Query 005966
Match_columns 667
No_of_seqs 697 out of 3879
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 12:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.8E-42 9.7E-47 369.6 42.1 503 52-631 61-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-41 5.4E-46 363.8 39.3 484 156-650 63-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.3E-27 2.8E-31 235.0 39.0 371 222-634 9-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8E-26 2.7E-30 227.7 38.1 354 287-649 8-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 8.1E-28 2.8E-32 245.4 23.2 183 382-565 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.6E-28 8.8E-33 249.1 16.7 212 93-327 8-224 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.6E-24 1.2E-28 224.6 32.1 434 177-650 6-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.5E-24 1.2E-28 224.7 30.4 449 146-626 6-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.7E-22 5.8E-27 213.1 38.1 448 75-623 25-500 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 8.8E-27 206.6 31.6 346 245-652 24-414 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.7E-21 5.7E-26 200.5 27.0 298 347-649 25-359 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.4E-19 8.3E-24 188.9 33.6 430 13-512 25-492 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 3.1E-17 1E-21 177.0 48.4 468 114-644 842-1341(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 2.1E-19 7.3E-24 178.6 27.3 311 314-629 4-350 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 1.1E-18 3.8E-23 173.4 31.5 299 348-650 3-337 (359)
16 3hym_B Cell division cycle pro 99.8 1.1E-18 3.7E-23 171.2 28.4 288 345-635 19-321 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 4.1E-15 1.4E-19 160.7 56.1 557 13-640 985-1584(1630)
18 3hym_B Cell division cycle pro 99.8 2.4E-18 8.1E-23 168.8 28.5 269 376-649 19-300 (330)
19 2xm6_A Protein corresponding t 99.8 3.1E-17 1.1E-21 170.0 36.9 380 246-645 38-468 (490)
20 1fch_A Peroxisomal targeting s 99.8 1.5E-18 5E-23 173.2 24.3 285 358-646 35-357 (368)
21 2ooe_A Cleavage stimulation fa 99.8 2.6E-16 8.7E-21 164.9 39.6 414 211-649 12-493 (530)
22 4eqf_A PEX5-related protein; a 99.8 4.9E-18 1.7E-22 169.2 20.9 264 378-645 64-353 (365)
23 2xm6_A Protein corresponding t 99.8 1.2E-15 4.1E-20 158.1 39.3 353 276-650 37-434 (490)
24 3mkr_A Coatomer subunit epsilo 99.8 5.5E-17 1.9E-21 154.6 26.7 271 356-642 7-288 (291)
25 2ooe_A Cleavage stimulation fa 99.8 3.8E-16 1.3E-20 163.6 35.6 408 176-617 12-495 (530)
26 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.8E-22 163.8 21.9 262 381-647 23-314 (327)
27 1b89_A Protein (clathrin heavy 99.8 8.5E-17 2.9E-21 155.9 27.0 349 52-476 11-370 (449)
28 1b89_A Protein (clathrin heavy 99.8 4.1E-16 1.4E-20 151.1 31.3 281 158-503 15-303 (449)
29 4g1t_A Interferon-induced prot 99.8 5.2E-17 1.8E-21 167.9 26.5 372 246-659 50-470 (472)
30 3mkr_A Coatomer subunit epsilo 99.8 2.2E-17 7.6E-22 157.3 20.3 250 386-650 6-266 (291)
31 1fch_A Peroxisomal targeting s 99.8 1.5E-17 5.3E-22 165.8 18.0 259 389-649 35-315 (368)
32 4eqf_A PEX5-related protein; a 99.7 3.2E-17 1.1E-21 163.2 18.8 234 413-649 64-311 (365)
33 2pl2_A Hypothetical conserved 99.7 3.2E-16 1.1E-20 142.6 18.4 198 446-646 2-212 (217)
34 3uq3_A Heat shock protein STI1 99.7 8.3E-16 2.8E-20 144.6 19.2 219 418-649 9-237 (258)
35 4g1t_A Interferon-induced prot 99.7 1.1E-14 3.9E-19 150.3 29.5 390 176-626 50-471 (472)
36 3cv0_A Peroxisome targeting si 99.7 8.1E-15 2.8E-19 143.3 26.0 258 12-273 20-312 (327)
37 3uq3_A Heat shock protein STI1 99.7 2.4E-15 8.3E-20 141.4 19.2 235 382-628 8-256 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 1.4E-16 4.6E-21 166.8 8.5 150 143-292 124-286 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-14 3.6E-19 138.5 19.2 243 391-642 17-269 (275)
40 3spa_A Mtrpol, DNA-directed RN 99.6 1.1E-16 3.9E-21 167.4 3.9 146 416-567 129-286 (1134)
41 3u4t_A TPR repeat-containing p 99.6 1.5E-14 5E-19 137.3 18.1 246 351-633 6-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 8.6E-14 2.9E-18 141.7 24.4 367 223-647 14-420 (452)
43 1ouv_A Conserved hypothetical 99.6 2.1E-13 7.2E-18 129.3 25.0 221 417-650 9-253 (273)
44 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-14 4.6E-19 134.9 16.4 199 448-649 22-223 (243)
45 3u4t_A TPR repeat-containing p 99.6 6.1E-14 2.1E-18 133.0 21.1 229 418-650 7-252 (272)
46 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-14 1.4E-18 132.4 19.4 199 449-649 37-239 (252)
47 2vq2_A PILW, putative fimbrial 99.6 6.5E-14 2.2E-18 128.4 19.6 200 448-649 7-212 (225)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-14 4.9E-19 134.7 15.0 213 417-633 26-241 (243)
49 2h6f_A Protein farnesyltransfe 99.6 3.6E-14 1.2E-18 139.7 16.8 228 417-649 100-349 (382)
50 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-13 5.3E-18 121.4 19.1 167 480-649 3-171 (184)
51 2h6f_A Protein farnesyltransfe 99.6 1.4E-13 4.9E-18 135.4 20.3 246 382-632 100-366 (382)
52 3e4b_A ALGK; tetratricopeptide 99.6 3.4E-13 1.2E-17 137.3 23.7 346 284-651 9-390 (452)
53 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 7.9E-18 127.3 20.4 201 421-624 44-248 (252)
54 4abn_A Tetratricopeptide repea 99.5 2.2E-14 7.6E-19 147.0 12.9 210 431-645 85-318 (474)
55 2vq2_A PILW, putative fimbrial 99.5 4.8E-13 1.6E-17 122.6 20.5 207 416-625 10-222 (225)
56 1ouv_A Conserved hypothetical 99.5 1.2E-12 4.3E-17 123.9 23.5 226 379-618 6-255 (273)
57 4a1s_A PINS, partner of inscut 99.5 3.4E-14 1.2E-18 143.8 13.3 265 383-648 52-372 (411)
58 2pl2_A Hypothetical conserved 99.5 3.2E-13 1.1E-17 122.7 18.4 201 382-610 8-210 (217)
59 3sf4_A G-protein-signaling mod 99.5 1.9E-13 6.4E-18 138.0 16.7 297 347-643 8-371 (406)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-13 5.5E-18 130.3 15.2 222 424-650 15-246 (275)
61 3ro2_A PINS homolog, G-protein 99.5 2.4E-13 8.1E-18 133.3 16.7 265 384-649 10-333 (338)
62 3vtx_A MAMA; tetratricopeptide 99.5 2.8E-13 9.5E-18 119.8 12.7 169 448-619 4-175 (184)
63 3sf4_A G-protein-signaling mod 99.5 1.7E-13 6E-18 138.3 11.2 266 314-579 10-333 (406)
64 4e6h_A MRNA 3'-END-processing 99.4 3E-10 1E-14 119.3 35.0 419 175-620 64-576 (679)
65 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-12 4.5E-17 139.0 17.3 163 482-647 9-173 (723)
66 2ond_A Cleavage stimulation fa 99.4 2.9E-11 9.8E-16 116.5 24.0 223 396-622 33-278 (308)
67 2ond_A Cleavage stimulation fa 99.4 1.5E-11 5.1E-16 118.6 21.4 216 431-651 33-273 (308)
68 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.6E-14 113.8 38.3 86 74-161 65-154 (679)
69 3as5_A MAMA; tetratricopeptide 99.4 1.7E-12 6E-17 114.7 13.6 130 518-649 43-174 (186)
70 3ulq_A Response regulator aspa 99.4 3.9E-11 1.3E-15 119.9 24.3 234 385-647 109-367 (383)
71 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-13 8.5E-18 131.5 7.5 239 382-648 30-307 (311)
72 4i17_A Hypothetical protein; T 99.4 8.2E-12 2.8E-16 114.6 17.0 167 482-650 7-211 (228)
73 3ulq_A Response regulator aspa 99.4 1.3E-12 4.3E-17 130.7 12.2 191 455-645 109-332 (383)
74 4i17_A Hypothetical protein; T 99.4 1E-11 3.4E-16 114.0 16.9 209 412-630 5-225 (228)
75 4a1s_A PINS, partner of inscut 99.4 2.1E-12 7.1E-17 130.6 12.1 263 355-617 55-375 (411)
76 3as5_A MAMA; tetratricopeptide 99.4 4.1E-11 1.4E-15 105.7 18.6 171 449-622 8-181 (186)
77 1hz4_A MALT regulatory protein 99.4 2.6E-10 8.8E-15 113.4 26.1 57 589-645 257-319 (373)
78 3ro2_A PINS homolog, G-protein 99.3 6.4E-12 2.2E-16 123.0 12.9 236 382-617 46-335 (338)
79 4abn_A Tetratricopeptide repea 99.3 2.3E-11 7.8E-16 124.6 17.2 211 395-610 84-317 (474)
80 3nf1_A KLC 1, kinesin light ch 99.3 5.3E-12 1.8E-16 122.1 11.2 243 347-617 26-310 (311)
81 3q15_A PSP28, response regulat 99.3 2.4E-11 8.2E-16 121.1 13.9 224 423-647 110-364 (378)
82 3mv2_B Coatomer subunit epsilo 99.3 5.4E-10 1.8E-14 103.8 20.0 176 468-648 85-282 (310)
83 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.7E-10 1.9E-14 101.8 18.1 188 450-654 5-219 (225)
84 1qqe_A Vesicular transport pro 99.2 1.3E-10 4.5E-15 110.8 14.4 190 458-647 46-268 (292)
85 3q15_A PSP28, response regulat 99.2 9.4E-10 3.2E-14 109.5 20.8 231 384-615 106-366 (378)
86 3edt_B KLC 2, kinesin light ch 99.2 9.9E-11 3.4E-15 111.2 12.6 224 425-648 12-281 (283)
87 1hz4_A MALT regulatory protein 99.2 8.3E-10 2.8E-14 109.8 19.3 262 356-617 22-325 (373)
88 3qky_A Outer membrane assembly 99.2 2.7E-10 9.1E-15 106.9 14.8 193 447-639 13-252 (261)
89 4ga2_A E3 SUMO-protein ligase 99.2 1.6E-11 5.4E-16 103.8 5.6 140 491-634 6-149 (150)
90 1qqe_A Vesicular transport pro 99.2 3.6E-10 1.2E-14 107.7 14.5 225 363-626 32-281 (292)
91 3mv2_B Coatomer subunit epsilo 99.2 4E-09 1.4E-13 98.0 20.6 244 358-623 23-291 (310)
92 4gyw_A UDP-N-acetylglucosamine 99.2 3E-10 1E-14 120.9 15.0 161 9-172 5-171 (723)
93 2pzi_A Probable serine/threoni 99.1 2E-10 6.9E-15 123.1 13.3 148 482-633 433-582 (681)
94 2fo7_A Synthetic consensus TPR 99.1 7.6E-10 2.6E-14 91.5 13.9 128 520-649 4-133 (136)
95 3qky_A Outer membrane assembly 99.1 8.6E-10 2.9E-14 103.4 15.1 169 480-649 13-225 (261)
96 4ga2_A E3 SUMO-protein ligase 99.1 8.8E-11 3E-15 99.2 6.1 125 523-649 3-130 (150)
97 3edt_B KLC 2, kinesin light ch 99.1 1.7E-09 5.8E-14 102.6 15.2 202 414-615 43-282 (283)
98 2r5s_A Uncharacterized protein 99.1 8.9E-10 3E-14 96.1 12.0 160 484-647 8-172 (176)
99 3rjv_A Putative SEL1 repeat pr 99.1 6.8E-09 2.3E-13 93.5 17.8 173 468-650 5-199 (212)
100 2fo7_A Synthetic consensus TPR 99.1 5.5E-09 1.9E-13 86.2 15.8 131 484-617 3-135 (136)
101 3qou_A Protein YBBN; thioredox 99.1 2.8E-09 9.7E-14 101.1 15.6 176 466-647 103-283 (287)
102 3urz_A Uncharacterized protein 99.0 2.1E-09 7.2E-14 96.6 13.5 127 487-617 59-189 (208)
103 2vsy_A XCC0866; transferase, g 99.0 1.9E-09 6.5E-14 113.6 14.7 162 462-626 2-169 (568)
104 3gyz_A Chaperone protein IPGC; 99.0 6.5E-10 2.2E-14 93.2 8.8 98 552-649 35-134 (151)
105 3urz_A Uncharacterized protein 99.0 1.9E-09 6.5E-14 96.9 11.8 159 487-650 9-188 (208)
106 3dra_A Protein farnesyltransfe 99.0 4E-08 1.4E-12 92.5 20.3 181 464-647 84-286 (306)
107 4gco_A Protein STI-1; structur 99.0 4.3E-09 1.5E-13 85.5 11.4 108 519-628 15-124 (126)
108 2ifu_A Gamma-SNAP; membrane fu 99.0 7.7E-09 2.6E-13 99.3 14.2 220 392-640 4-253 (307)
109 4gco_A Protein STI-1; structur 98.9 3.5E-09 1.2E-13 86.1 9.9 101 550-650 9-112 (126)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-08 4.8E-13 92.5 15.0 187 414-621 4-220 (225)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1E-08 3.5E-13 92.5 14.1 128 484-617 8-153 (213)
112 2pzi_A Probable serine/threoni 98.9 1.8E-08 6E-13 108.1 17.9 171 425-600 402-583 (681)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 5.3E-09 1.8E-13 100.4 12.5 196 426-646 3-222 (307)
114 2vsy_A XCC0866; transferase, g 98.9 1.3E-08 4.3E-13 107.4 16.3 149 427-579 2-154 (568)
115 2vgx_A Chaperone SYCD; alterna 98.9 2.3E-09 7.7E-14 90.1 8.2 94 554-647 22-117 (148)
116 3u3w_A Transcriptional activat 98.9 9.3E-08 3.2E-12 91.1 19.4 160 487-646 80-264 (293)
117 3qou_A Protein YBBN; thioredox 98.9 6.3E-08 2.1E-12 91.8 17.7 164 413-578 116-280 (287)
118 2uy1_A Cleavage stimulation fa 98.9 1.3E-06 4.5E-11 89.1 28.4 370 189-613 6-412 (493)
119 2c2l_A CHIP, carboxy terminus 98.8 3.2E-09 1.1E-13 100.3 7.2 191 449-648 4-199 (281)
120 1a17_A Serine/threonine protei 98.8 3.1E-08 1.1E-12 85.1 12.9 126 519-646 15-144 (166)
121 2r5s_A Uncharacterized protein 98.8 4.7E-08 1.6E-12 85.0 13.7 157 453-613 10-172 (176)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.7E-08 3.3E-12 86.1 16.0 152 451-616 8-174 (213)
123 2lni_A Stress-induced-phosphop 98.8 4E-08 1.4E-12 80.7 12.2 115 518-634 17-133 (133)
124 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-07 3.9E-12 90.5 16.8 162 485-646 78-264 (293)
125 2vyi_A SGTA protein; chaperone 98.8 4.4E-08 1.5E-12 80.2 12.1 118 517-636 12-131 (131)
126 3dra_A Protein farnesyltransfe 98.8 1.4E-06 4.9E-11 81.9 23.5 231 393-629 47-303 (306)
127 2e2e_A Formate-dependent nitri 98.8 1.1E-08 3.8E-13 89.2 8.6 128 492-622 20-152 (177)
128 1na0_A Designed protein CTPR3; 98.8 5.3E-08 1.8E-12 78.8 12.2 115 517-633 9-125 (125)
129 2xcb_A PCRH, regulatory protei 98.8 1.6E-08 5.5E-13 84.4 9.1 93 555-647 20-114 (142)
130 3upv_A Heat shock protein STI1 98.8 3.5E-08 1.2E-12 80.3 10.0 94 555-648 6-101 (126)
131 1p5q_A FKBP52, FK506-binding p 98.8 3.9E-08 1.3E-12 95.5 11.7 128 519-646 149-292 (336)
132 2vgx_A Chaperone SYCD; alterna 98.8 1.1E-08 3.8E-13 85.9 6.7 115 505-623 10-127 (148)
133 2kck_A TPR repeat; tetratricop 98.7 6.2E-08 2.1E-12 76.7 10.0 99 552-650 5-108 (112)
134 4f3v_A ESX-1 secretion system 98.7 6.2E-08 2.1E-12 88.8 11.1 195 426-626 18-248 (282)
135 3gyz_A Chaperone protein IPGC; 98.7 4.7E-08 1.6E-12 81.8 9.5 99 518-618 37-137 (151)
136 2uy1_A Cleavage stimulation fa 98.7 3.7E-05 1.3E-09 78.4 32.8 100 87-205 6-117 (493)
137 1hxi_A PEX5, peroxisome target 98.7 3.8E-08 1.3E-12 79.2 8.3 95 555-649 19-115 (121)
138 4gcn_A Protein STI-1; structur 98.7 4.9E-08 1.7E-12 79.4 8.3 93 555-647 10-111 (127)
139 2qfc_A PLCR protein; TPR, HTH, 98.7 5.2E-07 1.8E-11 85.9 16.7 164 451-614 77-266 (293)
140 4f3v_A ESX-1 secretion system 98.7 1.9E-07 6.6E-12 85.6 12.9 122 524-648 109-237 (282)
141 3u3w_A Transcriptional activat 98.7 2E-06 6.9E-11 81.7 20.6 160 455-614 81-266 (293)
142 3sz7_A HSC70 cochaperone (SGT) 98.7 8.7E-08 3E-12 82.2 9.7 110 516-627 10-121 (164)
143 3q49_B STIP1 homology and U bo 98.7 1.6E-07 5.4E-12 77.6 10.9 93 554-646 10-104 (137)
144 2e2e_A Formate-dependent nitri 98.7 1.9E-07 6.6E-12 81.2 11.9 123 527-651 20-147 (177)
145 3rjv_A Putative SEL1 repeat pr 98.7 1.5E-06 5.3E-11 77.9 18.1 159 378-545 17-196 (212)
146 2fbn_A 70 kDa peptidylprolyl i 98.7 1.6E-07 5.3E-12 83.5 11.4 96 554-649 89-187 (198)
147 1elw_A TPR1-domain of HOP; HOP 98.6 3.8E-07 1.3E-11 72.8 12.3 108 519-628 6-115 (118)
148 2xcb_A PCRH, regulatory protei 98.6 1.1E-07 3.6E-12 79.3 9.2 109 518-628 19-129 (142)
149 3upv_A Heat shock protein STI1 98.6 1.7E-07 5.9E-12 76.1 10.1 111 518-630 5-123 (126)
150 3gw4_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 80.8 13.5 59 588-646 110-174 (203)
151 1elw_A TPR1-domain of HOP; HOP 98.6 2.8E-07 9.5E-12 73.6 10.9 99 552-650 3-103 (118)
152 2lni_A Stress-induced-phosphop 98.6 2.5E-07 8.6E-12 75.8 10.8 100 550-649 13-114 (133)
153 3q7a_A Farnesyltransferase alp 98.6 1.8E-06 6.3E-11 82.0 17.7 181 465-648 105-331 (349)
154 2dba_A Smooth muscle cell asso 98.6 3.6E-07 1.2E-11 76.6 11.5 112 516-630 27-144 (148)
155 2hr2_A Hypothetical protein; a 98.6 1.2E-07 4.3E-12 78.1 8.0 61 587-647 59-130 (159)
156 3sz7_A HSC70 cochaperone (SGT) 98.6 5.8E-07 2E-11 77.0 12.2 94 483-579 12-105 (164)
157 1na0_A Designed protein CTPR3; 98.6 4.3E-07 1.5E-11 73.4 10.5 97 553-649 9-107 (125)
158 2vyi_A SGTA protein; chaperone 98.5 3.7E-07 1.3E-11 74.5 9.3 99 551-649 10-110 (131)
159 2dba_A Smooth muscle cell asso 98.5 1.5E-06 5E-11 72.8 13.1 99 551-649 26-129 (148)
160 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.1E-06 3.7E-11 89.3 13.9 95 553-647 317-414 (457)
161 1a17_A Serine/threonine protei 98.5 2.6E-06 8.7E-11 72.9 14.3 128 483-613 14-145 (166)
162 3q49_B STIP1 homology and U bo 98.5 7.5E-07 2.6E-11 73.5 10.3 113 515-629 7-126 (137)
163 3q7a_A Farnesyltransferase alp 98.5 6.4E-05 2.2E-09 71.4 24.6 235 388-628 63-346 (349)
164 1wao_1 Serine/threonine protei 98.5 2.8E-07 9.6E-12 94.0 9.1 119 524-644 13-135 (477)
165 2xev_A YBGF; tetratricopeptide 98.5 4E-07 1.4E-11 74.2 8.4 102 522-623 7-114 (129)
166 3dss_A Geranylgeranyl transfer 98.5 5.7E-06 1.9E-10 78.3 17.1 182 465-649 90-305 (331)
167 4gcn_A Protein STI-1; structur 98.5 5.2E-07 1.8E-11 73.2 8.5 100 520-622 11-119 (127)
168 1dce_A Protein (RAB geranylger 98.4 4.7E-06 1.6E-10 86.4 17.5 171 464-637 44-244 (567)
169 1hxi_A PEX5, peroxisome target 98.4 7.2E-07 2.5E-11 71.6 8.9 98 520-619 20-119 (121)
170 3gw4_A Uncharacterized protein 98.4 3.4E-06 1.2E-10 75.0 14.4 134 482-615 26-177 (203)
171 4b4t_Q 26S proteasome regulato 98.4 2.1E-06 7.1E-11 87.0 14.4 191 457-647 12-244 (434)
172 3rkv_A Putative peptidylprolyl 98.4 4.4E-07 1.5E-11 77.5 7.9 112 518-629 12-142 (162)
173 2if4_A ATFKBP42; FKBP-like, al 98.4 7.5E-07 2.6E-11 86.4 9.9 148 484-651 181-331 (338)
174 2fbn_A 70 kDa peptidylprolyl i 98.4 1.5E-07 5.1E-12 83.7 4.5 120 528-649 15-152 (198)
175 3k9i_A BH0479 protein; putativ 98.4 1.6E-07 5.6E-12 75.1 4.1 93 530-622 3-98 (117)
176 1elr_A TPR2A-domain of HOP; HO 98.4 7.4E-07 2.5E-11 72.7 8.1 110 519-631 6-124 (131)
177 2kck_A TPR repeat; tetratricop 98.4 2.7E-06 9.2E-11 67.0 11.2 100 518-619 7-111 (112)
178 1elr_A TPR2A-domain of HOP; HO 98.4 7E-07 2.4E-11 72.8 7.7 97 553-649 4-109 (131)
179 3rkv_A Putative peptidylprolyl 98.4 5.9E-07 2E-11 76.7 7.4 94 556-649 14-127 (162)
180 2c2l_A CHIP, carboxy terminus 98.4 1.8E-06 6.3E-11 81.3 11.2 114 516-631 3-118 (281)
181 2xev_A YBGF; tetratricopeptide 98.4 3.2E-06 1.1E-10 68.7 11.3 92 558-649 7-106 (129)
182 1ihg_A Cyclophilin 40; ppiase 98.4 1.5E-06 5.1E-11 85.2 10.7 90 552-641 272-363 (370)
183 3dss_A Geranylgeranyl transfer 98.4 1.1E-05 3.9E-10 76.2 16.1 186 461-649 41-268 (331)
184 3ro3_A PINS homolog, G-protein 98.3 2.2E-06 7.4E-11 72.9 10.0 129 520-648 12-158 (164)
185 1p5q_A FKBP52, FK506-binding p 98.3 5.4E-06 1.8E-10 80.3 13.7 130 482-613 147-293 (336)
186 2hr2_A Hypothetical protein; a 98.3 2.6E-06 8.8E-11 70.3 9.4 107 523-629 17-146 (159)
187 2l6j_A TPR repeat-containing p 98.3 3.1E-07 1E-11 72.6 3.8 95 551-645 2-104 (111)
188 3k9i_A BH0479 protein; putativ 98.3 6.7E-07 2.3E-11 71.4 5.2 85 565-649 2-91 (117)
189 3ma5_A Tetratricopeptide repea 98.2 4.4E-06 1.5E-10 64.2 8.2 65 584-648 6-70 (100)
190 3n71_A Histone lysine methyltr 98.2 3.7E-06 1.3E-10 85.0 9.4 123 527-649 319-465 (490)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 5.3E-06 1.8E-10 80.4 9.8 153 449-620 179-334 (338)
192 1wao_1 Serine/threonine protei 98.2 4.7E-06 1.6E-10 84.9 9.7 125 491-618 15-154 (477)
193 2kat_A Uncharacterized protein 98.2 3.8E-06 1.3E-10 66.7 7.0 62 585-646 19-80 (115)
194 4b4t_Q 26S proteasome regulato 98.1 2.7E-05 9.2E-10 78.7 14.9 159 489-647 11-203 (434)
195 1zu2_A Mitochondrial import re 98.1 8.1E-07 2.8E-11 73.1 2.6 49 601-649 62-121 (158)
196 3ro3_A PINS homolog, G-protein 98.1 9E-06 3.1E-10 69.0 9.5 134 484-617 11-161 (164)
197 3bee_A Putative YFRE protein; 98.1 1.3E-05 4.3E-10 60.2 8.1 73 582-655 3-78 (93)
198 1na3_A Designed protein CTPR2; 98.1 1.1E-05 3.8E-10 60.6 8.0 81 553-633 9-91 (91)
199 1ihg_A Cyclophilin 40; ppiase 98.1 7.5E-06 2.6E-10 80.2 8.5 113 518-649 224-337 (370)
200 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 6.8E-06 2.3E-10 83.4 8.3 66 585-650 317-382 (457)
201 1dce_A Protein (RAB geranylger 98.0 4.8E-05 1.7E-09 78.9 14.0 151 496-650 43-223 (567)
202 1klx_A Cysteine rich protein B 98.0 4.7E-05 1.6E-09 62.5 10.6 111 532-650 10-128 (138)
203 1zu2_A Mitochondrial import re 97.9 5E-06 1.7E-10 68.4 3.7 89 531-621 16-127 (158)
204 2l6j_A TPR repeat-containing p 97.9 2.5E-05 8.4E-10 61.3 7.3 68 583-650 2-69 (111)
205 1na3_A Designed protein CTPR2; 97.8 5.9E-05 2E-09 56.4 6.9 66 584-649 8-73 (91)
206 1klx_A Cysteine rich protein B 97.7 0.00046 1.6E-08 56.5 11.3 112 496-616 9-128 (138)
207 2kat_A Uncharacterized protein 97.6 0.00014 4.9E-09 57.3 7.9 81 535-617 3-85 (115)
208 3n71_A Histone lysine methyltr 97.6 0.0003 1E-08 71.0 11.8 123 491-613 318-463 (490)
209 3lvg_A Clathrin heavy chain 1; 97.5 0.00014 4.8E-09 70.1 7.3 423 52-539 62-534 (624)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00016 5.6E-09 55.1 6.3 81 559-647 6-89 (99)
211 2kc7_A BFR218_protein; tetratr 97.5 9.3E-05 3.2E-09 56.5 4.8 84 525-618 8-94 (99)
212 3qww_A SET and MYND domain-con 97.5 0.00021 7.1E-09 70.9 8.1 60 587-646 342-409 (433)
213 3ly7_A Transcriptional activat 97.4 0.0043 1.5E-07 58.8 15.5 135 481-617 193-342 (372)
214 3qww_A SET and MYND domain-con 97.4 0.00053 1.8E-08 68.0 9.3 95 529-623 310-425 (433)
215 3ly7_A Transcriptional activat 97.4 0.0013 4.3E-08 62.5 11.2 134 513-650 190-341 (372)
216 3qwp_A SET and MYND domain-con 97.3 0.00059 2E-08 67.8 8.7 60 587-646 331-398 (429)
217 3ma5_A Tetratricopeptide repea 97.3 0.00096 3.3E-08 50.8 8.0 64 481-545 6-69 (100)
218 3qwp_A SET and MYND domain-con 97.2 0.0012 4.1E-08 65.6 10.0 99 526-624 296-415 (429)
219 1pc2_A Mitochondria fission pr 97.1 0.00071 2.4E-08 54.9 6.1 91 531-623 12-109 (152)
220 3u64_A Protein TP_0956; tetrat 97.1 0.0013 4.5E-08 59.5 8.4 88 569-656 179-277 (301)
221 3lvg_A Clathrin heavy chain 1; 97.1 5.4E-05 1.9E-09 72.9 -0.8 240 246-503 53-325 (624)
222 1pc2_A Mitochondria fission pr 96.9 0.0033 1.1E-07 51.0 8.0 68 582-649 29-101 (152)
223 3bee_A Putative YFRE protein; 96.8 0.0087 3E-07 44.5 8.9 71 550-620 3-78 (93)
224 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0074 2.5E-07 46.2 8.6 71 556-626 8-87 (104)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0068 2.3E-07 46.4 6.8 66 584-649 4-76 (104)
226 3mkq_A Coatomer beta'-subunit; 96.4 0.092 3.2E-06 57.6 17.8 154 388-579 608-762 (814)
227 1qsa_A Protein (soluble lytic 96.3 1.2 4E-05 46.2 24.2 114 496-613 228-347 (618)
228 1wy6_A Hypothetical protein ST 96.3 0.27 9.3E-06 38.3 15.7 141 492-651 17-157 (172)
229 3mkq_A Coatomer beta'-subunit; 96.2 0.2 6.9E-06 54.8 19.2 102 358-476 662-763 (814)
230 3mkq_B Coatomer subunit alpha; 95.8 0.71 2.4E-05 38.4 16.7 127 459-611 15-141 (177)
231 1nzn_A CGI-135 protein, fissio 95.7 0.075 2.6E-06 41.4 9.1 90 533-624 17-113 (126)
232 1nzn_A CGI-135 protein, fissio 95.7 0.019 6.5E-07 44.7 5.7 82 569-650 17-105 (126)
233 3mkq_B Coatomer subunit alpha; 95.7 0.66 2.3E-05 38.6 15.3 129 490-645 13-141 (177)
234 3u64_A Protein TP_0956; tetrat 95.4 0.024 8.1E-07 51.5 6.0 63 555-617 201-272 (301)
235 4gns_B Protein CSD3, chitin bi 94.9 0.082 2.8E-06 55.7 9.4 58 589-646 341-398 (754)
236 4ady_A RPN2, 26S proteasome re 94.9 5.2 0.00018 43.3 33.9 251 256-510 383-657 (963)
237 1y8m_A FIS1; mitochondria, unk 94.8 0.23 7.9E-06 39.3 9.4 74 550-623 36-115 (144)
238 4h7y_A Dual specificity protei 94.6 0.14 4.6E-06 41.0 7.6 105 515-622 11-131 (161)
239 3o48_A Mitochondria fission 1 94.3 0.087 3E-06 41.1 5.8 73 551-623 38-116 (134)
240 4h7y_A Dual specificity protei 93.6 0.36 1.2E-05 38.5 8.2 97 480-579 11-120 (161)
241 1wy6_A Hypothetical protein ST 92.8 2.8 9.6E-05 32.8 15.4 138 391-549 19-156 (172)
242 3ffl_A Anaphase-promoting comp 92.7 0.42 1.4E-05 39.1 7.5 25 621-645 124-148 (167)
243 2wpv_A GET4, UPF0363 protein Y 92.3 7.1 0.00024 36.1 18.3 168 248-441 34-215 (312)
244 1y8m_A FIS1; mitochondria, unk 91.6 3.2 0.00011 32.9 11.2 71 580-650 34-108 (144)
245 3ffl_A Anaphase-promoting comp 91.6 1.3 4.3E-05 36.3 9.2 59 487-545 25-91 (167)
246 4b4t_P 26S proteasome regulato 91.4 12 0.00041 37.0 21.1 95 485-579 140-244 (445)
247 4b4t_P 26S proteasome regulato 91.2 4.3 0.00015 40.2 14.8 184 463-647 30-246 (445)
248 3lpz_A GET4 (YOR164C homolog); 91.2 9.7 0.00033 35.5 20.3 167 249-441 37-214 (336)
249 3o48_A Mitochondria fission 1 90.6 1.8 6E-05 33.9 8.7 70 580-649 35-108 (134)
250 4gns_B Protein CSD3, chitin bi 90.4 1 3.5E-05 47.5 9.8 52 527-580 347-398 (754)
251 3lpz_A GET4 (YOR164C homolog); 90.4 12 0.00039 35.0 22.4 155 15-192 14-182 (336)
252 2ff4_A Probable regulatory pro 90.2 0.55 1.9E-05 45.8 7.1 67 588-654 174-245 (388)
253 2uwj_G Type III export protein 88.7 5.5 0.00019 29.0 9.5 87 124-215 19-105 (115)
254 4ady_A RPN2, 26S proteasome re 88.4 31 0.0011 37.4 36.3 216 357-579 383-620 (963)
255 2p58_C Putative type III secre 88.3 5.9 0.0002 28.9 9.9 87 124-215 20-106 (116)
256 1v54_E Cytochrome C oxidase po 88.2 2.7 9.1E-05 30.8 7.4 55 572-626 32-86 (109)
257 3txn_A 26S proteasome regulato 87.6 17 0.00058 35.0 15.2 26 415-440 20-45 (394)
258 1zbp_A Hypothetical protein VP 87.3 6.9 0.00023 35.0 11.3 121 491-622 6-137 (273)
259 1zbp_A Hypothetical protein VP 86.6 0.97 3.3E-05 40.4 5.5 56 562-617 6-63 (273)
260 1v54_E Cytochrome C oxidase po 86.6 3.3 0.00011 30.4 7.1 62 498-561 26-87 (109)
261 2ff4_A Probable regulatory pro 85.8 3.6 0.00012 40.0 9.8 69 80-150 176-249 (388)
262 4fhn_B Nucleoporin NUP120; pro 85.3 11 0.00037 42.8 14.7 55 350-405 814-868 (1139)
263 2wpv_A GET4, UPF0363 protein Y 83.9 27 0.00092 32.3 19.9 151 17-190 17-178 (312)
264 2uwj_G Type III export protein 83.0 11 0.00039 27.4 9.2 78 227-308 21-98 (115)
265 2p58_C Putative type III secre 82.6 12 0.00041 27.3 9.1 78 227-308 22-99 (116)
266 4fhn_B Nucleoporin NUP120; pro 81.3 6.1 0.00021 44.8 10.6 64 587-650 901-969 (1139)
267 4b4t_R RPN7, 26S proteasome re 80.9 7 0.00024 38.5 9.7 60 520-579 134-194 (429)
268 2y69_E Cytochrome C oxidase su 80.8 7.7 0.00026 30.2 7.4 57 570-626 73-129 (152)
269 2y69_E Cytochrome C oxidase su 80.2 7.2 0.00025 30.4 7.1 60 500-561 71-130 (152)
270 2qx5_A Nucleoporin NIC96; mRNA 78.7 62 0.0021 33.6 16.0 79 385-475 300-382 (661)
271 3txn_A 26S proteasome regulato 76.8 55 0.0019 31.5 19.0 26 350-375 21-46 (394)
272 3esl_A Checkpoint serine/threo 73.3 23 0.00079 30.0 9.2 28 587-614 117-144 (202)
273 4b4t_R RPN7, 26S proteasome re 68.4 43 0.0015 32.8 11.7 59 451-509 133-195 (429)
274 3eiq_C Programmed cell death p 65.8 91 0.0031 29.4 12.7 66 352-417 221-291 (358)
275 3bqo_A Telomeric repeat-bindin 63.0 42 0.0014 28.2 8.3 71 569-639 94-171 (211)
276 4a1g_A Mitotic checkpoint seri 62.9 48 0.0016 26.7 8.6 46 604-649 84-131 (152)
277 3ltm_A Alpha-REP4; protein eng 62.7 71 0.0024 27.1 19.3 61 245-306 124-184 (211)
278 3mv2_A Coatomer subunit alpha; 61.2 89 0.003 28.8 11.1 59 576-648 196-256 (325)
279 1qsa_A Protein (soluble lytic 59.5 1.7E+02 0.0057 30.3 39.7 372 52-450 80-486 (618)
280 4b4t_S RPN3, 26S proteasome re 57.2 36 0.0012 34.0 8.4 61 519-579 233-296 (523)
281 1wdy_A 2-5A-dependent ribonucl 56.0 1.1E+02 0.0038 27.2 11.7 46 327-372 193-240 (285)
282 2wvi_A Mitotic checkpoint seri 55.5 59 0.002 26.5 8.1 29 587-615 98-126 (164)
283 2qx5_A Nucleoporin NIC96; mRNA 54.5 2.1E+02 0.007 29.8 19.4 38 152-189 158-198 (661)
284 3esl_A Checkpoint serine/threo 53.2 1E+02 0.0036 26.1 9.9 58 495-553 92-150 (202)
285 3ltj_A Alpharep-4; protein eng 51.7 1.1E+02 0.0036 25.7 16.5 152 448-612 27-178 (201)
286 2zu6_B Programmed cell death p 50.7 1.5E+02 0.0052 27.2 11.5 69 382-451 169-239 (307)
287 2nsz_A Programmed cell death p 50.1 67 0.0023 25.0 7.5 63 149-211 10-77 (129)
288 3ltj_A Alpharep-4; protein eng 49.2 1.2E+02 0.004 25.4 19.5 153 144-305 26-178 (201)
289 3eiq_C Programmed cell death p 49.1 1.8E+02 0.006 27.5 13.4 67 382-449 220-288 (358)
290 2d2s_A Exocyst complex compone 48.7 72 0.0025 28.0 8.3 23 183-205 24-46 (235)
291 4b4t_S RPN3, 26S proteasome re 48.6 32 0.0011 34.3 6.6 69 553-621 231-306 (523)
292 3ltm_A Alpha-REP4; protein eng 47.2 1.3E+02 0.0044 25.4 18.5 145 69-226 27-171 (211)
293 2r9g_A AAA ATPase, central reg 47.0 1.3E+02 0.0045 25.4 9.4 64 382-446 14-85 (204)
294 1ya0_A SMG-7 transcript varian 45.9 50 0.0017 33.0 7.6 53 592-644 159-211 (497)
295 2ion_A PDCD4, programmed cell 43.9 52 0.0018 26.5 6.1 63 149-211 12-79 (152)
296 2d2s_A Exocyst complex compone 41.5 88 0.003 27.4 7.7 87 81-170 24-115 (235)
297 1wdy_A 2-5A-dependent ribonucl 41.4 1.9E+02 0.0064 25.6 12.7 15 459-473 226-240 (285)
298 3i5p_A Nucleoporin NUP170; hel 41.0 2.4E+02 0.0082 28.3 11.6 69 581-649 174-247 (525)
299 3ctd_A Putative ATPase, AAA fa 39.9 1.7E+02 0.0057 25.0 8.6 64 382-445 35-106 (213)
300 1wgl_A TOLL-interacting protei 39.8 31 0.0011 22.4 3.3 48 606-654 11-58 (59)
301 1k1a_A B-cell lymphoma 3-encod 39.5 1.6E+02 0.0056 25.2 9.7 25 187-211 16-40 (241)
302 3hra_A Ankyrin repeat family p 39.4 1.4E+02 0.0047 24.8 8.8 51 156-211 12-66 (201)
303 3bge_A Predicted ATPase; struc 38.9 1.3E+02 0.0044 25.4 7.6 45 384-428 9-56 (201)
304 2nsz_A Programmed cell death p 36.3 1.3E+02 0.0044 23.3 7.1 63 250-312 10-77 (129)
305 2zu6_B Programmed cell death p 35.2 2.6E+02 0.0088 25.7 10.1 64 149-213 6-73 (307)
306 4aez_C MAD3, mitotic spindle c 34.1 1.6E+02 0.0054 25.5 7.8 31 585-615 150-180 (223)
307 4a1g_A Mitotic checkpoint seri 33.6 1.9E+02 0.0063 23.3 9.6 16 296-311 83-98 (152)
308 4gq2_M Nucleoporin NUP120; bet 33.4 1.7E+02 0.0058 32.3 10.1 33 587-619 899-932 (950)
309 3ygs_P Procaspase 9; apoptosis 32.9 42 0.0014 24.5 3.6 37 58-94 51-87 (97)
310 3mv2_A Coatomer subunit alpha; 32.4 3E+02 0.01 25.4 13.4 126 85-241 124-256 (325)
311 1n11_A Ankyrin; clathrin, BAND 31.8 3.5E+02 0.012 26.0 14.5 15 258-272 121-135 (437)
312 3b7b_A Euchromatic histone-lys 31.1 1.6E+02 0.0056 25.2 8.2 201 197-408 24-236 (237)
313 1oai_A Nuclear RNA export fact 30.7 33 0.0011 22.3 2.4 25 88-112 33-57 (59)
314 2ion_A PDCD4, programmed cell 29.9 1.1E+02 0.0036 24.7 5.8 63 250-312 12-79 (152)
315 3bu8_A Telomeric repeat-bindin 29.7 2E+02 0.0067 24.7 7.3 23 456-478 121-143 (235)
316 2fu4_A Ferric uptake regulatio 29.0 1.4E+02 0.0048 20.5 6.9 61 201-262 6-67 (83)
317 4ets_A Ferric uptake regulatio 28.2 1.3E+02 0.0045 24.4 6.3 72 91-163 13-86 (162)
318 1k1a_A B-cell lymphoma 3-encod 27.8 2.8E+02 0.0097 23.6 11.9 26 287-312 15-40 (241)
319 2f6m_A Suppressor protein STP2 26.4 1.4E+02 0.0047 19.8 4.7 45 114-159 5-49 (65)
320 4aez_C MAD3, mitotic spindle c 26.2 2.5E+02 0.0086 24.2 7.7 18 295-312 131-148 (223)
321 3bu8_A Telomeric repeat-bindin 25.6 62 0.0021 27.6 3.7 20 560-579 121-140 (235)
322 2wvi_A Mitotic checkpoint seri 25.1 2.8E+02 0.0095 22.6 9.1 52 501-553 79-131 (164)
323 2fu4_A Ferric uptake regulatio 24.0 1.8E+02 0.0061 20.0 6.4 60 404-464 7-67 (83)
324 1n11_A Ankyrin; clathrin, BAND 23.3 5E+02 0.017 24.9 14.5 19 154-172 118-136 (437)
325 2w57_A Ferric uptake regulatio 23.1 2.8E+02 0.0097 22.0 7.3 62 201-263 6-68 (150)
326 3ygs_P Procaspase 9; apoptosis 22.5 1.2E+02 0.0041 22.0 4.5 38 362-399 51-88 (97)
327 2b7e_A PRE-mRNA processing pro 22.5 1E+02 0.0034 20.0 3.4 30 91-121 2-31 (59)
328 2gtq_A Aminopeptidase N; alani 22.1 7E+02 0.024 27.0 12.2 148 485-641 679-839 (867)
329 3eu9_A Huntingtin-interacting 22.0 3.6E+02 0.012 22.8 8.7 14 493-506 218-231 (240)
330 2cfu_A SDSA1; SDS-hydrolase, l 21.8 1.4E+02 0.0048 31.2 6.5 65 569-636 436-500 (658)
331 3jxi_A Vanilloid receptor-rela 21.7 2.3E+02 0.0079 24.7 7.4 89 287-375 11-117 (260)
332 3ljn_A Hypothetical protein; a 21.6 3.8E+02 0.013 24.9 9.3 18 458-475 179-196 (364)
333 1mzb_A Ferric uptake regulatio 21.4 2.7E+02 0.0093 21.6 6.8 61 202-263 8-69 (136)
334 2fe3_A Peroxide operon regulat 20.9 2.1E+02 0.0073 22.5 6.1 60 203-263 13-72 (145)
335 2bn5_A PSI; nuclear protein, s 20.5 1.2E+02 0.0041 16.7 3.4 27 621-647 4-30 (33)
336 3ljn_A Hypothetical protein; a 20.0 2.5E+02 0.0085 26.2 7.6 15 258-272 181-195 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-42 Score=369.62 Aligned_cols=503 Identities=8% Similarity=-0.054 Sum_probs=391.7
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHH
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 131 (667)
..+...|....+...|+.++.+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHH
Confidence 44566788888899999998889999999999999999999999999999965 678899999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCC-------------------ChhhHHHHHHHHHHcCC
Q 005966 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-------------------SVVSWNTLISGYFKNAY 192 (667)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~ 192 (667)
.+|+.+... +++..+++.++.+|.+.|++++|+++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999988654 688999999999999999999999999965433 47899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-hHHHHHHHHHcccCcchHHH--HHH-HHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 005966 193 AKEALVVFDWMLKSGVEPD-CASVVSVLPACGYLKEIEMG--RMI-HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268 (667)
Q Consensus 193 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 268 (667)
+++|+++|++|.+. .|+ ...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999999885 354 34455555544444333322 222 5555555555566677888889999999999999
Q ss_pred HHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCC
Q 005966 269 VFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346 (667)
Q Consensus 269 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 346 (667)
+|+++.+ ++..+|+.++..|.+.|++++|+++|+++.+.+ |+
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---------------------------------- 337 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PY---------------------------------- 337 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cc----------------------------------
Confidence 9999987 788899999999999999999999999987643 21
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC
Q 005966 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426 (667)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 426 (667)
+..+|+.++.++.+.|++++|.++++++.+. .+.+..++..+...|.+
T Consensus 338 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 338 -------------------------------NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp -------------------------------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHH
T ss_pred -------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence 1223445555556666666777777766643 23456667777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHH
Q 005966 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLF 505 (667)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (667)
.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777776654 44567788888888888888888888888766554 6788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCc--hhHHHHHHHHHhhcCChHHHHHHHHhC-
Q 005966 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH---QTCSR--ADHYTCIVDLLGRAGRLDEAYDLIRTM- 579 (667)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~- 579 (667)
+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999875 4477889999999999999999999999998732 55676 778999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 580 PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 580 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
...| +..+|..++.+|...|++++|...++++++++|+++.++..++.+|..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 3344 788999999999999999999999999999999999999999988864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-41 Score=363.80 Aligned_cols=484 Identities=9% Similarity=-0.076 Sum_probs=403.3
Q ss_pred HHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHH
Q 005966 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235 (667)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 235 (667)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777788888888888899999999999999999999999999985 5688899999999999999999999999
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------------------ChhHHHHHHHHHHhCCChHH
Q 005966 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-------------------DVVTWTSMINGYALNGDVRN 296 (667)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 296 (667)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 578889999999999999999999999965443 37899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCh-hhHHHHHHHhhcccchHHH--HHH-HHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHh
Q 005966 297 ALGLFQLMQFEGVRPNS-LTIGSLLSACSSLYYLKRG--RSL-HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372 (667)
Q Consensus 297 a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 372 (667)
|+++|++|.+.+ |+. ..+..+...+...+..+.. ..+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998854 443 3344444433333322221 111 3444444445556677778899999999999999999
Q ss_pred ccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCch
Q 005966 373 RTSK--KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450 (667)
Q Consensus 373 ~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 450 (667)
++.. ++..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9986 777889999999999999999999999999765 3367789999999999999999999999998765 66788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005966 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529 (667)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (667)
++..++.+|.+.|++++|.++|+++....| +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 999999999999999999999999876555 57799999999999999999999999999875 4577899999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 005966 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-------PLKPT--HAVWGALLGACVIHGN 600 (667)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 600 (667)
.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999983 4457888999999999999999999999988 34777 7899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 601 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
+++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+...
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.3e-27 Score=234.96 Aligned_cols=371 Identities=11% Similarity=0.092 Sum_probs=270.5
Q ss_pred cccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 005966 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNAL 298 (667)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 298 (667)
+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++|+
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 445566666666665555543 22344455555555566666666665555433 34445555666666666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC---
Q 005966 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS--- 375 (667)
Q Consensus 299 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 375 (667)
+.|+++.+. .|+ +...+..+...+.+.|++++|...|+++.
T Consensus 88 ~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 88 EHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666665542 222 23344455555555555555555555443
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHH
Q 005966 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455 (667)
Q Consensus 376 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (667)
+.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 2223336666777777788888888888877642 3345677788888888888888888888888765 4566778888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 534 (667)
...+...|++++|...|++.....| +..++..+...+...|++++|+..|+++.+.+ +.+..++..+..++.+.|+++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8889999999999998887766555 46788889999999999999999999999864 234668888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 535 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
+|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ...| +..++..++..+.+.|++++|+..+++++
T Consensus 289 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999988 34567788999999999999999999999987 4445 57788999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHhhcCC
Q 005966 613 ELEPENPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 613 ~~~p~~~~~~~~l~~~~~~~g~ 634 (667)
++.|+++.++..++.++...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8e-26 Score=227.73 Aligned_cols=354 Identities=16% Similarity=0.093 Sum_probs=287.5
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHH
Q 005966 287 GYALNGDVRNALGLFQLMQFEGVRPNSL-TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365 (667)
Q Consensus 287 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (667)
.+.+.|++++|.+.+.++.+. .|+.. .+..+...+...|+.+.+...+....+.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 344455555555555555443 23322 22333333444555555555555554433 445667888888889999999
Q ss_pred HHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 005966 366 LSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN-DATLNSLLPAYAILADLQQAMNIHCYLI 441 (667)
Q Consensus 366 ~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 441 (667)
+|...|+++. +.+...|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...++.+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999988765 334456999999999999999999999999875 344 4566677888889999999999999998
Q ss_pred HhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 005966 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520 (667)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (667)
+.. +.+...+..+...+.+.|++++|...|+++....|+ ...|..+...+...|++++|+..+++..+.. +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 556788999999999999999999999998876664 5788899999999999999999999999864 2356788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 005966 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIH 598 (667)
Q Consensus 521 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 598 (667)
..+..++...|++++|...++++.+ ..+.+...|..++.++.+.|++++|.+.++++ . .+++..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999998 33445678999999999999999999999998 3 445788999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.1e-28 Score=245.40 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=162.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHhCCCCCchHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD---------LQQAMNIHCYLIRYGFLSVVEVS 452 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 452 (667)
++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 677788888888899999999999999999999999999999876543 68889999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005966 453 TGLIDIYSKCGSLESAHKIFSEIPIKD--KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530 (667)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (667)
++|+.+|++.|++++|.++|++|...+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999988776 899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (667)
|++++|.+++++|.+ .+..|+..||+.++..++.
T Consensus 189 g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 999999999999988 7888999999998888775
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.6e-28 Score=249.08 Aligned_cols=212 Identities=10% Similarity=0.029 Sum_probs=177.2
Q ss_pred HHHHHHHHhHHcCCCCCC-cccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcc
Q 005966 93 DSLKMFLGMLRLGEYNPD-NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171 (667)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 171 (667)
.+..+.+.+.+. +..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 344555666665 44444 3468888999999999999999999999999999999999999999887764432
Q ss_pred cCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHH
Q 005966 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251 (667)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (667)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1344568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhccc
Q 005966 252 ALVDMYVKCGSVNEARLVFDRMSE----RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327 (667)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 327 (667)
.+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|++.|+.|+..||+.++..++..+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999974 8999999999999999999999999999999999999999999999887643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-24 Score=224.58 Aligned_cols=434 Identities=10% Similarity=-0.040 Sum_probs=282.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 005966 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256 (667)
Q Consensus 177 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (667)
...|..+...+.+.|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456667777888888888888888887743 565555555555555555555555555555543 2234445555555
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHH
Q 005966 257 YVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333 (667)
Q Consensus 257 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 333 (667)
+...|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER----------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-----------
Confidence 5555555555555544432 12222222222222222222222222222222222221111110000
Q ss_pred HHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC----------CCCcccHHHHHHHHHh---CCChHHHHH
Q 005966 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS----------KKKTVPWNAILAGCVH---NGLARKAVE 400 (667)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~---~~~~~~A~~ 400 (667)
.......|+ .......+.... ..+...+......+.. .|++++|+.
T Consensus 152 -----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 210 (514)
T 2gw1_A 152 -----KDKQENLPS----------------VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210 (514)
T ss_dssp ----------CCCC----------------HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred -----HhhccCCch----------------hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 000000111 111111111111 1112224444444444 789999999
Q ss_pred HHHHHHH-----CCCCC--------CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHH
Q 005966 401 LFRQMLV-----EVVEP--------NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467 (667)
Q Consensus 401 ~~~~m~~-----~g~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (667)
.|+++.+ ....| +..++..+...+...|++++|...++.+.+.... ...+..+..++...|++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTT
T ss_pred HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHH
Confidence 9998887 32122 2356777788888899999999999998887643 7888888999999999999
Q ss_pred HHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005966 468 AHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546 (667)
Q Consensus 468 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 546 (667)
|...++++....| +...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 289 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999998877664 56788888999999999999999999998864 335678888888999999999999999999873
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhccC
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P---LKPT----HAVWGALLGACVI---HGNVELGEVAAKWLFELE 615 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 615 (667)
.+.+...+..++..+.+.|++++|...++++ . ..|+ ...+..++..+.. .|++++|...++++++..
T Consensus 368 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 368 --FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp --STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred --cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 3345667888999999999999999999887 2 2222 3378888888998 999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 616 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
|+++.++..++.+|.+.|++++|.+.++++.+...
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999887653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-24 Score=224.70 Aligned_cols=449 Identities=10% Similarity=-0.015 Sum_probs=321.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhcccC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcc
Q 005966 146 TFVGNCLIAMYMNFGEVKAARKVFDAMW--EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223 (667)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 223 (667)
...+..+...+.+.|++++|+..|+++. .|+...|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567778889999999999999999884 3688899999999999999999999999998853 234568889999999
Q ss_pred cCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHH
Q 005966 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE----RDVVTWTSMINGYALNGDVRNALG 299 (667)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~ 299 (667)
..|++++|...++.+.+.+. ++......++..+........+.+.+..+.. ++...++.-........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 156 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE------- 156 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-------
Confidence 99999999999999998874 3444444555555444444443333333222 11111111111111111
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHh---cCCHHHHHHHHhccCC
Q 005966 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK---CNLVKLSFQVFARTSK 376 (667)
Q Consensus 300 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 376 (667)
..|+.......+..+........ ...+.+...+......+.. .|++++|...|+++..
T Consensus 157 ---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 157 ---------NLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred ---------CCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 12222222211111111100000 0001112222222222332 5666666666655432
Q ss_pred -----C------------CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHH
Q 005966 377 -----K------------KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439 (667)
Q Consensus 377 -----~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 439 (667)
. +...|..+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 1233777888899999999999999998876533 77888888999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 005966 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518 (667)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (667)
+.+.. +.+...+..+...+...|++++|...++++....| +...+..+...+...|++++|+..++++.+.. +.+..
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 88765 55677889999999999999999999998876654 56788899999999999999999999999864 33567
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhh---cCChHHHHHHHHhC-CCCC-CHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGR---AGRLDEAYDLIRTM-PLKP-THAVWG 589 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~ 589 (667)
.+..+...+...|++++|...++++.+.....++ ...+..++.++.. .|++++|.+.++++ ...| +..++.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 8888999999999999999999999874433333 3478899999999 99999999999987 3334 677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
.+...+...|++++|...+++++++.|+++..+..+.
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999999888777664
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.7e-22 Score=213.11 Aligned_cols=448 Identities=9% Similarity=-0.009 Sum_probs=312.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005966 75 SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIA 154 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 154 (667)
...|..+...+.+.|++++|+..|+++++. .+.+..++..+..++...|++++|...++++++.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456788889999999999999999999987 45677888999999999999999999999999887 567788888888
Q ss_pred HHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHH
Q 005966 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234 (667)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 234 (667)
+|...|++++|+..|+.+ ..+....+..+..+...+....|+..++.+.... |+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~---------------------- 156 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR---------------------- 156 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc----------------------
Confidence 999999999999888644 2233333333445555566677788877775421 110
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHhC--------CChHHHHHHHHH
Q 005966 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV---TWTSMINGYALN--------GDVRNALGLFQL 303 (667)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~ 303 (667)
.....|+ ...+..+....+.+.+...+....+.+.. ....+...+... |++++|..++++
T Consensus 157 -----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 157 -----GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp -------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0001122 22333455566667776666666553332 233333332222 356677777776
Q ss_pred HHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHH
Q 005966 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383 (667)
Q Consensus 304 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 383 (667)
+.+. .|+... ++..+.. .+.
T Consensus 228 ~l~~--~p~~~~----------------------------------~~~~~~~------------------------~~~ 247 (537)
T 3fp2_A 228 LLSA--NTVDDP----------------------------------LRENAAL------------------------ALC 247 (537)
T ss_dssp HHC----CCCHH----------------------------------HHHHHHH------------------------HHH
T ss_pred HHHH--CCCcch----------------------------------hhHHHHH------------------------HHH
Confidence 6653 222111 1111111 133
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcC
Q 005966 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463 (667)
Q Consensus 384 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (667)
.+...+...|++++|...|++..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 4555677788889999999888875 4557788888888999999999999999988776 456778888899999999
Q ss_pred CHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005966 464 SLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 542 (667)
++++|...|+++....| +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999988776655 46788888999999999999999999998874 33566788888889999999999999998
Q ss_pred hHHhcCCCC----chhHHHHHHHHHhhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005966 543 MLENHQTCS----RADHYTCIVDLLGRA----------GRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 543 ~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 606 (667)
+.+.....+ ....+..+..++.+. |++++|...++++ ...| +...+..+...+...|++++|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 876332112 122244455677777 8999999998887 3334 66788888888999999999999
Q ss_pred HHHHhhccCCCCCchHH
Q 005966 607 AAKWLFELEPENPGNYV 623 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~~~ 623 (667)
.+++++++.|+++....
T Consensus 484 ~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999988665544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.6e-22 Score=206.58 Aligned_cols=346 Identities=10% Similarity=0.037 Sum_probs=220.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005966 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321 (667)
Q Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 321 (667)
.+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|+..|+++.+.+ |+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------- 92 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD--------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---------
Confidence 3556667777777777777777777776653 355666777777777777777777777776542 21
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCc------ccHHHHHHHHHhCCCh
Q 005966 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT------VPWNAILAGCVHNGLA 395 (667)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~ 395 (667)
+..++..+...|.+.|++++|...|+++...++ ..|..++..+..
T Consensus 93 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 143 (450)
T 2y4t_A 93 -------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---- 143 (450)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----
T ss_pred -------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----
Confidence 122223333333333333333333333322111 112222111000
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhC
Q 005966 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475 (667)
Q Consensus 396 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (667)
..+..+...+...|++++|...++.+.+.. +.+...+..++.+|.+.|++++|.+.|+++
T Consensus 144 -------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 144 -------------------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp -------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 001112223445566666666666655543 345566666777777777777777777766
Q ss_pred CCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHH
Q 005966 476 PIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSA------------LHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 476 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l------------l~~~~~~g~~~~A~~~~~ 541 (667)
....| +..+|..+...+...|++++|+..|+++.+. .|+. ..+..+ ...|.+.|++++|...|+
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55433 4567777788888888888888888888765 3333 333333 677888899999999999
Q ss_pred HhHHhcCCCCc--hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 542 FMLENHQTCSR--ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 542 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
++.+.....|. ...+..++.++.+.|++++|+..++++ ...| +..+|..++.+|...|++++|...+++++++.|+
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 98873322222 346788888999999999999999887 3444 6788899999999999999999999999999999
Q ss_pred CCchHHHHH------------HHHhhcC-----CchHHHHHHHH-hhhCCCcc
Q 005966 618 NPGNYVLLS------------KLYSAVR-----RWKDAENVRDV-MDEKGLRK 652 (667)
Q Consensus 618 ~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~~ 652 (667)
++.++..++ ..|...| +.+++.+.+++ ..+..+.+
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999988888 4566666 56677777776 44444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.7e-21 Score=200.50 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=229.9
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005966 347 EVIVETALIDMYAKCNLVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423 (667)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 423 (667)
+...+..+...|.+.|++++|...|+++. +.+...|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 34455556666666666666666666543 2344446666666677777777777777666543 2235566666666
Q ss_pred HhCcCCHHHHHHHHHHHHHhCCCCCc---hHHHHH------------HHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHH
Q 005966 424 YAILADLQQAMNIHCYLIRYGFLSVV---EVSTGL------------IDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSV 487 (667)
Q Consensus 424 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 487 (667)
+...|++++|...++.+.+.. +.+. ..+..+ ...+.+.|++++|...|+++....| +...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 777777777777777666543 2222 333333 5558899999999999999876655 5678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHH--------
Q 005966 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI-------- 559 (667)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------- 559 (667)
+..+|.+.|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+++.+. .+.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 446788999999999999999999999999873 33344445444
Q ss_pred ----HHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 560 ----VDLLGRAGRLDEAYDLIRTM-PLKPT-----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 560 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
+..+.+.|++++|++.++++ ...|+ ...+..++..+.+.|++++|+..++++++..|+++.++..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999998 44554 347888889999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHhhhCC
Q 005966 630 SAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~ 649 (667)
...|++++|...++++.+..
T Consensus 340 ~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTS
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.4e-19 Score=188.91 Aligned_cols=430 Identities=10% Similarity=-0.011 Sum_probs=224.2
Q ss_pred hhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccC---CCCcchHHHHHHHHH
Q 005966 13 THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMS---ERSSFLYNTVMKMYA 86 (667)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 86 (667)
...+..++..+...|+++.|...+.++++..|.+ ....+ .+|...|++++|+..|+++. ..+..+|..+..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3556777777777888888888888888877776 22222 77777778888877777753 235567777777777
Q ss_pred hCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCCHHH
Q 005966 87 QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMNFGEVKA 164 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 164 (667)
..|++++|+..|+.+ .. .|+... ..+..+...+....|...++.+..... .+........+..+....+.+.
T Consensus 105 ~~g~~~~A~~~~~~~-~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HcCCHHHHHHHHHHH-hc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 777888887777533 22 222111 112233344455667777766654310 0011111223344555666666
Q ss_pred HHHHhcccCCCChh---hHHHHHHHHHH--------cCChhHHHHHHHHHHHCCCCCChH-HHHHHHHHcccCcchHHHH
Q 005966 165 ARKVFDAMWEHSVV---SWNTLISGYFK--------NAYAKEALVVFDWMLKSGVEPDCA-SVVSVLPACGYLKEIEMGR 232 (667)
Q Consensus 165 A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 232 (667)
+...+......+.. ....+...+.. .|++++|+.+|+++.+. .|+.. .+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~-------------- 242 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENA-------------- 242 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH--------------
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHH--------------
Confidence 66666665444332 22222222221 13556666666666542 23311 00000
Q ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 005966 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310 (667)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 310 (667)
..++..+...+...|++++|...|++..+ |+...|..+...+...|++++|.+.++++.+...
T Consensus 243 --------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 307 (537)
T 3fp2_A 243 --------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP- 307 (537)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-
T ss_pred --------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-
Confidence 22344555566666666666666666553 4455666666666666777777777766655321
Q ss_pred CChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHH
Q 005966 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390 (667)
Q Consensus 311 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 390 (667)
.+..++..+...+...|+++.|...+..+.+.. +.+..+ |..+...+.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~-------------------------------~~~la~~~~ 355 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYP-------------------------------YIQLACLLY 355 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHH-------------------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH-------------------------------HHHHHHHHH
Confidence 123333333333444444444444443333322 112223 444444444
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC-----CCCCchHHHHHHHHHHhc---
Q 005966 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-----FLSVVEVSTGLIDIYSKC--- 462 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~--- 462 (667)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .......+..+...+.+.
T Consensus 356 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 4555555555555544431 2223344444555555555555555555543321 011122233444555555
Q ss_pred -------CCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005966 463 -------GSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512 (667)
Q Consensus 463 -------g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 512 (667)
|++++|...|+++....| +..+|..+...+.+.|++++|.+.|++..+..
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 677777777766655444 34567777777777777777777777777753
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.1e-17 Score=176.96 Aligned_cols=468 Identities=11% Similarity=0.045 Sum_probs=335.2
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhccc------------CCCChh---
Q 005966 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM------------WEHSVV--- 178 (667)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~--- 178 (667)
-..++..+-+.+++..-..+++.-+..| ..++.++|+|...|...++-.+. ++.+- .++|+.
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~ 918 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLAC 918 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHH
Confidence 5566666777778887888888888888 78999999999999976543332 22111 111211
Q ss_pred -------hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCC--cchhH
Q 005966 179 -------SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG--KNIAA 249 (667)
Q Consensus 179 -------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 249 (667)
.-..||....+++-++.--+.+ .+ +-|...|..++.-- -+.=+++.+......++ .++.-
T Consensus 919 iay~~g~~d~eli~vt~~n~l~k~~aryl---v~---r~d~~lW~~vl~~~-----n~~RR~Lidqv~a~aL~e~~~Pee 987 (1630)
T 1xi4_A 919 VAYERGQCDLELINVCNENSLFKSLSRYL---VR---RKDPELWGSVLLES-----NPYRRPLIDQVVQTALSETQDPEE 987 (1630)
T ss_pred HHhcccCCcHHHHHHHhcchhHHHHHHHH---HH---hcCHHHHHHHhcCC-----cHHHHHHHHHHHHhhcccccCHHH
Confidence 1223444444444443322221 11 13555666655321 12222344433332222 23444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 005966 250 WNALVDMYVKCGSVNEARLVFDRMSE-R-----DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323 (667)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 323 (667)
....+..|...|.+.+|+++++++.- + +...-+.++.+..+. +..+..+...+.... ....+-..+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHH
Confidence 56778888899999999999999873 2 224456677766666 556666666665421 133356677
Q ss_pred hcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 005966 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403 (667)
Q Consensus 324 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 403 (667)
...|.+++|..+++... ......+.+ +-..+++++|.++.++.. ++.+|..+..++...|++++|++.|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88999999999998852 111111222 337889999999999773 36679999999999999999999996
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcc
Q 005966 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483 (667)
Q Consensus 404 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 483 (667)
+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.+ +++..
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-----~~n~a 1196 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-----GPNNA 1196 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-----CCCHH
Confidence 63 467788889999999999999999999887765 444445569999999999997555542 26777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
.|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHH
Confidence 7888999999999999999999995 378999999999999999999999873 447799999999
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc--CCchHHHHH
Q 005966 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV--RRWKDAENV 641 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~ 641 (667)
...|++..|...... +..++..+..++..|.+.|.+++|+..+++++.++|.+...+..|+.+|.+- ++..++.++
T Consensus 1261 ve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998765 3445666778999999999999999999999999999999998888887764 456666666
Q ss_pred HHH
Q 005966 642 RDV 644 (667)
Q Consensus 642 ~~~ 644 (667)
|..
T Consensus 1339 f~~ 1341 (1630)
T 1xi4_A 1339 FWS 1341 (1630)
T ss_pred HHH
Confidence 553
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.1e-19 Score=178.57 Aligned_cols=311 Identities=12% Similarity=0.031 Sum_probs=164.4
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHH
Q 005966 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS---KKKTVPWNAILAGCV 390 (667)
Q Consensus 314 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 390 (667)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...+...|++++|...|++.. +.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555666677777777777777776654 3445666667777777777777777776654 233344666677777
Q ss_pred hCCChHHHHHHHHHHHHCCCCC---C-HHHHHHH------------HHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHH
Q 005966 391 HNGLARKAVELFRQMLVEVVEP---N-DATLNSL------------LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (667)
..|++++|...|++..+. .| + ...+..+ ...+...|++++|...++.+.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 777777777777776653 33 2 2222222 244455555555555555555543 334455555
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-----------
Q 005966 455 LIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS----------- 522 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------- 522 (667)
+...+...|++++|...++++....| +...|..+...+...|++++|...+++..+.. +.+...+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544432 34455555555555555555555555555532 111222211
Q ss_pred -HHHHHhccCCHHHHHHHHHHhHHhcCCCCch--hHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005966 523 -ALHACSHGGLLDEGLDLFNFMLENHQTCSRA--DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVI 597 (667)
Q Consensus 523 -ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 597 (667)
+...+.+.|++++|...++++.+.....+.. ..+..++.++...|++++|++.+++. ...| +..++..++..+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 1333445555555555555554422111110 12333444555555555555555544 2222 44455555555555
Q ss_pred cCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
.|++++|...+++++++.|+++.++..+..++
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 55555555555555555555555544444443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.1e-18 Score=173.35 Aligned_cols=299 Identities=12% Similarity=0.020 Sum_probs=238.6
Q ss_pred chHHhHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005966 348 VIVETALIDMYAKCNLVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424 (667)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 424 (667)
+..+..+...+...|++++|...|+++. +.++..|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 3456677888899999999999998775 3445568888899999999999999999988753 33557788888899
Q ss_pred hCcCCHHHHHHHHHHHHHhCCC--CCchHHHHH------------HHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHH
Q 005966 425 AILADLQQAMNIHCYLIRYGFL--SVVEVSTGL------------IDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVII 489 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~ 489 (667)
...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++....| +...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999988876420 344444444 5788899999999999998776654 567788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHH------------
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT------------ 557 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------ 557 (667)
..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+... .+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 34667888888899999999999999999987332 3333332
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTM-PLKPT-HA----VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
.++..+.+.|++++|.+.++++ ...|+ .. .+..+...+...|++++|...++++++..|+++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 2366788999999999999887 33443 32 345577788899999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHhhhCCC
Q 005966 632 VRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~ 650 (667)
.|++++|.+.++++.+..+
T Consensus 319 ~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHHHHhcCC
Confidence 9999999999999887653
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-18 Score=171.20 Aligned_cols=288 Identities=11% Similarity=0.023 Sum_probs=209.5
Q ss_pred CCCchHHhHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005966 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421 (667)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 421 (667)
+.+..++..+...+...|++++|..+|+++. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4455566667777777777777777777664 3334446667777777888888888888877642 33456666777
Q ss_pred HHHhCcC-CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChH
Q 005966 422 PAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGE 499 (667)
Q Consensus 422 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 499 (667)
..+...| ++++|...++...+.. +.+...+..+...+...|++++|...++++....|+ ...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888888777654 445667777888888888888888888877665543 566777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCchhHHHHHHHHHhhcCChHHH
Q 005966 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ-------TCSRADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 572 (667)
+|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887754 33556777788888888888888888888776321 133456777888888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH-hhcCCc
Q 005966 573 YDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY-SAVRRW 635 (667)
Q Consensus 573 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 635 (667)
++.++++ ...| +...+..+...+...|++++|...+++++++.|+++.++..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888876 2333 5667788888888888888888888888888888888888888877 455553
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=4.1e-15 Score=160.72 Aligned_cols=557 Identities=11% Similarity=0.059 Sum_probs=327.3
Q ss_pred hhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc---hhhhh-----hHhhhcCChhhHHHhhcccCCCCcchHHHHHHH
Q 005966 13 THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF---THLRS-----SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKM 84 (667)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~-----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 84 (667)
|.-.....+++...|.+.++..++++++..+..+ ..+.+ .+....++..+....++... ...+...
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d------~~eIA~I 1058 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD------APDIANI 1058 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc------HHHHHHH
Confidence 4455667777888888888888888888332211 22222 44444455555544444221 3446777
Q ss_pred HHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 005966 85 YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 164 (667)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .++.+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 7888888888888887621 1111222222 557788888877654 346677788888888888888
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCC
Q 005966 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244 (667)
Q Consensus 165 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (667)
|+..|... .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888553 577778888888888888888888888776643 33333334777777877777544332 1 3
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhh
Q 005966 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324 (667)
Q Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 324 (667)
++...+..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. -+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 35566667888888888888888888875 47888888888888888888888876 44577777777787
Q ss_pred cccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCccc---HHHHHHHHHhC--CChHHHH
Q 005966 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP---WNAILAGCVHN--GLARKAV 399 (667)
Q Consensus 325 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~--~~~~~A~ 399 (667)
..|++..|...... +..++..+..++..|.+.|.+++|+.+++.....+... |.-+...+++. ++..+++
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777665432 33455566678888888888888888887765444332 65566666654 3344444
Q ss_pred HHHHHHHHCCCCC------CHHHHHHHHHHHhCcCCHHHHHHHHHHHH----------H-hCCCCCchHHHHHHHHHHhc
Q 005966 400 ELFRQMLVEVVEP------NDATLNSLLPAYAILADLQQAMNIHCYLI----------R-YGFLSVVEVSTGLIDIYSKC 462 (667)
Q Consensus 400 ~~~~~m~~~g~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~-~~~~~~~~~~~~l~~~~~~~ 462 (667)
+.|..-. +++| +...|..+...|.+.|+++.|....-.-. + ..-..++..|...+..|...
T Consensus 1337 k~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1337 ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 4444322 2222 34557777777777888877763211110 0 01133556666666666532
Q ss_pred CCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH----
Q 005966 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD---- 538 (667)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~---- 538 (667)
+ ..+..-+..... | ..-+...+..+.+.++..-+..+++.....+. ...-..+...+....+++.-..
T Consensus 1415 ~--P~~lndLl~~l~--~-rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~---~~Vneal~el~ieeed~~~Lr~si~~ 1486 (1630)
T 1xi4_A 1415 K--PLLLNDLLMVLS--P-RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN---KSVNESLNNLFITEEDYQALRTSIDA 1486 (1630)
T ss_pred C--hHHHHHHHHHhh--h-cCChHHHHHHHHHcCChHHhHHHHHHHHHhcc---hhhhHHHHHHhcCccchHHHHHHHhh
Confidence 2 111111111111 0 11123334444455555555555544443221 1111222233333333321111
Q ss_pred --------HHHHhHHhcCCCCchhHHHHHH-HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005966 539 --------LFNFMLENHQTCSRADHYTCIV-DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609 (667)
Q Consensus 539 --------~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 609 (667)
+-.++.+ + +..-+..+. ..|.+.|+|..|.+++++.+. |...+.+..++|+.+.+++++.
T Consensus 1487 ~~nfd~~~La~~lek-h----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~ 1555 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEK-H----ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQ 1555 (1630)
T ss_pred ccCcCHHHHHHHhhh-h----hHHHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111 1 111122233 345566899999999888753 3446667778888888877777
Q ss_pred HhhccCCCCCchHHHHHHHHhhcCCchHHHH
Q 005966 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640 (667)
Q Consensus 610 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 640 (667)
-..+. .+..+|......|+..-+.+-+++
T Consensus 1556 ~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1556 WFLQE--EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHhc--CChhHHHHHHHHHhccCCchHHHH
Confidence 66665 334455555555555444444444
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.4e-18 Score=168.78 Aligned_cols=269 Identities=10% Similarity=-0.015 Sum_probs=233.7
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHH
Q 005966 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455 (667)
Q Consensus 376 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (667)
..++..+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455668888899999999999999999998763 3344556667788889999999999999998876 5677889999
Q ss_pred HHHHHhcC-CHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 005966 456 IDIYSKCG-SLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533 (667)
Q Consensus 456 ~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 533 (667)
...+...| ++++|...|+++....| +...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999999887765 46789999999999999999999999999874 33456777789999999999
Q ss_pred HHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCCHH
Q 005966 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-L----------KPTHAVWGALLGACVIHGNVE 602 (667)
Q Consensus 534 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~ 602 (667)
++|...++++.+ ..+.+...+..++..+...|++++|...++++- . +....++..++..+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999988 445567889999999999999999999998871 1 334578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 603 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999987754
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=3.1e-17 Score=170.00 Aligned_cols=380 Identities=10% Similarity=-0.016 Sum_probs=263.5
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCChhhH
Q 005966 246 NIAAWNALVDMYVK----CGSVNEARLVFDRMSE-RDVVTWTSMINGYAL----NGDVRNALGLFQLMQFEGVRPNSLTI 316 (667)
Q Consensus 246 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~ 316 (667)
+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444444445544 4555555555554433 344445555555555 555555555555555443 23333
Q ss_pred HHHHHHhhc----ccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHh----cCCHHHHHHHHhccC-CCCcccHHHHHH
Q 005966 317 GSLLSACSS----LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK----CNLVKLSFQVFARTS-KKKTVPWNAILA 387 (667)
Q Consensus 317 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~li~ 387 (667)
..+-..+.. .++.+.|...++...+.+ +...+..+...|.. .++.++|...|++.. ..++..+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333433 455555655555555543 34445556666665 667778887777654 334455777777
Q ss_pred HHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 005966 388 GCVH----NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI----LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459 (667)
Q Consensus 388 ~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (667)
.|.. .++.++|+++|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7777 788999999999888765 45566666666664 788999999998887754 345666777778
Q ss_pred Hh----cCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005966 460 SK----CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH-----GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530 (667)
Q Consensus 460 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (667)
.. .++.++|.+.|++..+. .+...+..+...|... +++++|+..|++..+.| +...+..+...|...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 77 89999999999988765 4566777788888887 89999999999999875 455677777777765
Q ss_pred C---CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005966 531 G---LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR----AGRLDEAYDLIRTMPLKPTHAVWGALLGACVI----HG 599 (667)
Q Consensus 531 g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 599 (667)
| ++++|.++|++..+. .+...+..+..+|.. .+++++|++.+++.....++..+..+...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 789999999999882 356678889999988 89999999999987444567888889998888 89
Q ss_pred CHHHHHHHHHHhhccCC---CCCchHHHHHHHHhhcCCchH--HHHHHHHh
Q 005966 600 NVELGEVAAKWLFELEP---ENPGNYVLLSKLYSAVRRWKD--AENVRDVM 645 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 645 (667)
|.++|...++++.+.+| +++.+...++.++....+..+ |.+++++.
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999984 478888888887765332222 44555543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.5e-18 Score=173.21 Aligned_cols=285 Identities=11% Similarity=-0.041 Sum_probs=229.6
Q ss_pred HHhcCCHHHHHH-HHhccC---CC----CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC
Q 005966 358 YAKCNLVKLSFQ-VFARTS---KK----KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429 (667)
Q Consensus 358 ~~~~g~~~~a~~-~~~~~~---~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 429 (667)
+...|++++|.. .+++.. +. +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 777554 22 23448889999999999999999999999763 4466788889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc-chHHH---------------HHHHHH
Q 005966 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI-VVWSV---------------IIAGYG 493 (667)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~---------------l~~~~~ 493 (667)
+++|...++.+.+.. +.+...+..+..+|...|++++|.+.++++....|+. ..+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998876 5678889999999999999999999999887765532 22211 233344
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHH
Q 005966 494 MHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (667)
..|++++|+..++++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..++.++.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999864321 4778999999999999999999999999883 345677899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-----------CchHHHHHHHHhhcCCchHHH
Q 005966 573 YDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-----------PGNYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 573 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 639 (667)
+..++++ ...| +...+..++..+...|++++|...+++++++.|++ +.++..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999997 3444 67789999999999999999999999999999887 788999999999999999999
Q ss_pred HHHHHhh
Q 005966 640 NVRDVMD 646 (667)
Q Consensus 640 ~~~~~~~ 646 (667)
.++++..
T Consensus 351 ~~~~~~l 357 (368)
T 1fch_A 351 AADARDL 357 (368)
T ss_dssp HHHTTCH
T ss_pred HhHHHHH
Confidence 9987543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.6e-16 Score=164.87 Aligned_cols=414 Identities=9% Similarity=0.012 Sum_probs=269.6
Q ss_pred ChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHH-
Q 005966 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMING- 287 (667)
Q Consensus 211 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~- 287 (667)
+...|..++.. .+.|+++.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|++... |+...|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567777764 56778888888888877753 44666777888888888888888888887765 666666655532
Q ss_pred HHhCCChHHHHH----HHHHHHhc-CCCCC-hhhHHHHHHHhhc---------ccchHHHHHHHHHHHHhcCCCCchHHh
Q 005966 288 YALNGDVRNALG----LFQLMQFE-GVRPN-SLTIGSLLSACSS---------LYYLKRGRSLHAWTIKQNLECEVIVET 352 (667)
Q Consensus 288 ~~~~~~~~~a~~----~~~~m~~~-~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 352 (667)
....|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.+..+++..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566665554 55555432 44443 2333333333222 455666666666655521000011222
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH------HCC---CCCCH--------H
Q 005966 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML------VEV---VEPND--------A 415 (667)
Q Consensus 353 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~------~~g---~~p~~--------~ 415 (667)
.........|. ..+..++. ...+++..|..+++++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00111110 02345566666666532 111 23431 2
Q ss_pred HHHHHHHHHhC----cCCH----HHHHHHHHHHHHhCCCCCchHHHHHHHHHHh-------cCCHH-------HHHHHHh
Q 005966 416 TLNSLLPAYAI----LADL----QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK-------CGSLE-------SAHKIFS 473 (667)
Q Consensus 416 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 473 (667)
.|...+..... .++. ..+..+|+...... +.++..+..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 34433332221 1232 46777888887764 5677888888888875 68887 8999999
Q ss_pred hCCC-CCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 005966 474 EIPI-KDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE--VTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549 (667)
Q Consensus 474 ~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (667)
+... ..| +...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|..+|+++.+..
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-- 386 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-- 386 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--
Confidence 9886 445 4678999999999999999999999999985 4543 478888888888999999999999998732
Q ss_pred CCchhHHHHHHHH-HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc----hH
Q 005966 550 CSRADHYTCIVDL-LGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG----NY 622 (667)
Q Consensus 550 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~ 622 (667)
+.+...|...+.. +...|++++|..+|++. ...| ++..|..++..+.+.|+.++|..++++++...|.+|. .|
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2233333333322 33689999999999987 4445 6788999999999999999999999999998887766 77
Q ss_pred HHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 623 VLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
...+......|+.+.+..+.+++.+.-
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 777888888999999999999987654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.9e-18 Score=169.15 Aligned_cols=264 Identities=11% Similarity=-0.029 Sum_probs=218.6
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 005966 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457 (667)
Q Consensus 378 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (667)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34448888999999999999999999998763 4467788899999999999999999999998876 556888999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCC-----------cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 005966 458 IYSKCGSLESAHKIFSEIPIKDKD-----------IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PNEVTFTSALH 525 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~ 525 (667)
+|.+.|++++|...|+++....|+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999988765532 123344578899999999999999999997432 15788999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 603 (667)
.+...|++++|...++++.+. .+.+..+|..++.+|...|++++|++.++++ ...| +..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999983 4456788999999999999999999999987 4445 57889999999999999999
Q ss_pred HHHHHHHhhccCCC------------CCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 604 GEVAAKWLFELEPE------------NPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 604 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
|...+++++++.|+ +..++..++.++...|+.+.|.+..++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999998887 3678999999999999999999887663
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.2e-15 Score=158.08 Aligned_cols=353 Identities=13% Similarity=0.011 Sum_probs=294.0
Q ss_pred CChhHHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhc----ccchHHHHHHHHHHHHhcCCCC
Q 005966 276 RDVVTWTSMINGYAL----NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS----LYYLKRGRSLHAWTIKQNLECE 347 (667)
Q Consensus 276 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 347 (667)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 567777778888887 899999999999998764 45566666666776 889999999999998865 5
Q ss_pred chHHhHHHHHHHh----cCCHHHHHHHHhccCCC-CcccHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005966 348 VIVETALIDMYAK----CNLVKLSFQVFARTSKK-KTVPWNAILAGCVH----NGLARKAVELFRQMLVEVVEPNDATLN 418 (667)
Q Consensus 348 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~ 418 (667)
...+..|...|.. .+++++|...|++.... ++..+..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677778888888 88999999999987643 45557888888887 789999999999998875 567777
Q ss_pred HHHHHHhC----cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCCcchHHHHHH
Q 005966 419 SLLPAYAI----LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK----CGSLESAHKIFSEIPIKDKDIVVWSVIIA 490 (667)
Q Consensus 419 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 490 (667)
.+...|.. .++.++|...++...+.+ ++..+..+...|.. .+++++|..+|++..+. .+...+..+..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~ 263 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 77777776 899999999999998865 45677788888886 88999999999988775 45667777888
Q ss_pred HHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 491 GYGM----HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG-----GLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 491 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
.+.. .++.++|+..|++..+.| +...+..+...|... +++++|...+++..+ .+ +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHH
Confidence 8887 899999999999998865 455677777777776 899999999999988 32 3456777888
Q ss_pred HHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh---
Q 005966 562 LLGRAG---RLDEAYDLIRTMPLKPTHAVWGALLGACVI----HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA--- 631 (667)
Q Consensus 562 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 631 (667)
+|...| ++++|++.+++.....++..+..+...|.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888766 889999999988444678899999999988 899999999999998864 57899999999998
Q ss_pred -cCCchHHHHHHHHhhhCCC
Q 005966 632 -VRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 632 -~g~~~~A~~~~~~~~~~~~ 650 (667)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=5.5e-17 Score=154.62 Aligned_cols=271 Identities=8% Similarity=-0.043 Sum_probs=216.8
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHH
Q 005966 356 DMYAKCNLVKLSFQVFARTSKKKTVP----WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431 (667)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 431 (667)
+-....|+++.|+..++.....++.. ...+..+|...|++++|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456789999999988776555433 35567899999999999986654 24567778888899999999999
Q ss_pred HHHHHHHHHHHhCC-CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005966 432 QAMNIHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510 (667)
Q Consensus 432 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 510 (667)
+|.+.++.+...+. +.+...+..+..++.+.|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999988774 44566777788999999999999999998 26778899999999999999999999999998
Q ss_pred cCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CH
Q 005966 511 SGVQPNEVTF---TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-TH 585 (667)
Q Consensus 511 ~~~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 585 (667)
.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 74 554321 22334445668999999999999984 5567888999999999999999999999997 4455 77
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHH
Q 005966 586 AVWGALLGACVIHGNVEL-GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
.++..++..+...|+.++ +.+.++++++++|+++.+.. ...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 789999999999999865 67899999999999877654 455566666665544
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.8e-16 Score=163.58 Aligned_cols=408 Identities=12% Similarity=0.090 Sum_probs=262.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-ChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHH
Q 005966 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254 (667)
Q Consensus 176 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 254 (667)
+...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|+++.|..+|+.++... |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 4445555554 24455555555555555542 23 23345555555555555555555555555543 4566777777
Q ss_pred HHH-HhcCCHHHHHH----HHhhcCC------CChhHHHHHHHHHHh---------CCChHHHHHHHHHHHhcCCCCCh-
Q 005966 255 DMY-VKCGSVNEARL----VFDRMSE------RDVVTWTSMINGYAL---------NGDVRNALGLFQLMQFEGVRPNS- 313 (667)
Q Consensus 255 ~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~- 313 (667)
... ...|+.++|.+ +|+.... .+...|...+....+ .|+++.|..+|++..+. |..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 533 35677777665 6665421 356678777776554 68899999999999872 432
Q ss_pred --hhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhc-------cC------CCC
Q 005966 314 --LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR-------TS------KKK 378 (667)
Q Consensus 314 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~------~~~ 378 (667)
..|..........+. ..+.. ++. .+.+++..|..++.. +. .++
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 222221111000000 00111 110 012334444433332 11 111
Q ss_pred --------cccHHHHHHHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC-------cCCHH----
Q 005966 379 --------TVPWNAILAGCVHN----GLA----RKAVELFRQMLVEVVEPNDATLNSLLPAYAI-------LADLQ---- 431 (667)
Q Consensus 379 --------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~---- 431 (667)
...|...+...... ++. .++..+|++.... .+-+...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 12244444333222 222 4778888888765 23355666666666654 68876
Q ss_pred ---HHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc--chHHHHHHHHHHcCChHHHHHHHH
Q 005966 432 ---QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI--VVWSVIIAGYGMHGHGETAVSLFK 506 (667)
Q Consensus 432 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 506 (667)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++....|+. ..|..++..+.+.|+.++|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999988863335578889999999999999999999999988776653 479999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C---C
Q 005966 507 EMVQSGVQPNEVTFTSALHA-CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P---L 581 (667)
Q Consensus 507 ~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~ 581 (667)
+..+.. +.+...|...... +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. . .
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 999863 2233333332222 346899999999999998843 345788999999999999999999999987 2 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 582 KPT--HAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 582 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 332 347888888888899999999999999999985
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.1e-17 Score=163.75 Aligned_cols=262 Identities=11% Similarity=-0.040 Sum_probs=213.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 005966 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460 (667)
Q Consensus 381 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (667)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 36677777888888888888888887653 3355677777788888888888888888887765 456777888888888
Q ss_pred hcCCHHHHHHHHhhCCCCCCCc-chHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005966 461 KCGSLESAHKIFSEIPIKDKDI-VVWSVI--------------IA-GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524 (667)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 524 (667)
..|++++|.+.++++....|+. ..+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 8888888888888776655432 333332 22 3777889999999999999875 34678899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005966 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVE 602 (667)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 602 (667)
..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++ ...| +...+..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999883 3456778999999999999999999999987 3344 6788999999999999999
Q ss_pred HHHHHHHHhhccCCC------------CCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 603 LGEVAAKWLFELEPE------------NPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 603 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
+|...++++++..|+ ++.++..++.+|...|++++|...+++..+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999 788999999999999999999999887554
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.5e-17 Score=155.91 Aligned_cols=349 Identities=11% Similarity=0.116 Sum_probs=143.0
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHH
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 131 (667)
.+....|+.++|...++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 11 ~ll~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4566789999999999999665 49999999999999999999999643 46779999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005966 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 211 (667)
..++..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 988887774 45688899999999999999999988864 67789999999999999999999999976
Q ss_pred hHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC
Q 005966 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291 (667)
Q Consensus 212 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 291 (667)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 36778888888888888888888776 257788888888888888888877666654 3333344577778888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHh--cCCHHHHHH
Q 005966 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK--CNLVKLSFQ 369 (667)
Q Consensus 292 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~ 369 (667)
|++++|+.+++...... +.-. ..|+.+.-.|++ .+++.+.++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~-----------------------------------~~ftel~il~~ky~p~k~~ehl~ 264 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHM-----------------------------------GMFTELAILYSKFKPQKMREHLE 264 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCH-----------------------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCc-HHHH-----------------------------------HHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888888887765432 1111 222223333332 234444444
Q ss_pred HHhccC---C-----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q 005966 370 VFARTS---K-----KKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440 (667)
Q Consensus 370 ~~~~~~---~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 440 (667)
.|..-. + .+...|..+...|...++++.|... |.+. ...-+...|.-++.--.+..-+-+|..++
T Consensus 265 ~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fy--- 338 (449)
T 1b89_A 265 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY--- 338 (449)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH---
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHH---
Confidence 444322 1 2345588899999999999988774 3332 22233444444443322222222232222
Q ss_pred HHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005966 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476 (667)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (667)
.+. .+...+.|+.++...=+...+..+|+..-
T Consensus 339 l~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 339 LEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred Hhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 211 12335556666655556666666665543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.1e-16 Score=151.15 Aligned_cols=281 Identities=14% Similarity=0.132 Sum_probs=89.4
Q ss_pred hcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHH
Q 005966 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237 (667)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (667)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567788888888888554 37888888888888888888888542 5666788888888888888888887776
Q ss_pred HHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHH
Q 005966 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317 (667)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 317 (667)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 34467778888888888888887777653 66667888888888888888888888765 2344
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHH
Q 005966 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397 (667)
Q Consensus 318 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 397 (667)
. ++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.
T Consensus 153 ~-----------------------------------LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 153 R-----------------------------------LASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp H-----------------------------------HHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHH
T ss_pred H-----------------------------------HHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHH
Confidence 4 444444444444444444444 244445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh--cCCHHHHHHHHhhC
Q 005966 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK--CGSLESAHKIFSEI 475 (667)
Q Consensus 398 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 475 (667)
|......+. +.|+. ...++..|.+.|.+++|..+++...... +--..+|+-|.-+|++ -+++.+..++|..-
T Consensus 196 A~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 196 AQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 533322211 22222 2344555555555555555555544333 3334444544444444 33444555555433
Q ss_pred CCCCC------CcchHHHHHHHHHHcCChHHHHH
Q 005966 476 PIKDK------DIVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 476 ~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
....| +...|..+...|...++++.|..
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33211 45667777777777888877765
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.2e-17 Score=167.95 Aligned_cols=372 Identities=12% Similarity=-0.028 Sum_probs=202.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcC-----
Q 005966 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSE------------RDVVTWTSMINGYALNGDVRNALGLFQLMQFEG----- 308 (667)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----- 308 (667)
....|+.|...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888888888888876432 234578888888888888888888888765420
Q ss_pred -CCCC-hhhHHHHHHHhhc--ccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHH
Q 005966 309 -VRPN-SLTIGSLLSACSS--LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384 (667)
Q Consensus 309 -~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (667)
..++ ..++.....++.. .+++++|...|+.+.+.. +.++..+..+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASY------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-------------------------
Confidence 0111 1223222222222 234555555555554443 112222222222211
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 005966 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA----ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460 (667)
Q Consensus 385 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (667)
.+...++.++|++.+++..+.. +.+...+..+...+. ..+++++|.+.++...... +.....+..+...|.
T Consensus 184 ---~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 184 ---RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYR 258 (472)
T ss_dssp ---HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred ---HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence 1223344455555555544321 112222222222221 2344555555555555443 334445555555566
Q ss_pred hcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCCHHHH
Q 005966 461 KCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGM-------------------HGHGETAVSLFKEMVQSGVQPNEVTF 520 (667)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (667)
+.|++++|...+++..+..|+ ..++..+..+|.. .+..++|...+++..+.. +.+..++
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 666666666665555444443 2333333333321 234677888888888764 3345678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch--hHHHHHHHH-HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005966 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRA--DHYTCIVDL-LGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACV 596 (667)
Q Consensus 521 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 596 (667)
..+...+...|++++|...|+++++. ...+.. ..+..+... +...|++++|+..+++. .+.|+.....
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~------- 409 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE------- 409 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-------
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-------
Confidence 88889999999999999999999872 222211 123333333 34689999999999886 5666643322
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCCCeeEE
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 659 (667)
+..+.+..+++++++.+|+++.++..||.+|...|++++|++.+++..+.+.....+.+|+
T Consensus 410 --~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 --KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2334567788899999999999999999999999999999999999999887666666664
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.2e-17 Score=157.32 Aligned_cols=250 Identities=11% Similarity=0.079 Sum_probs=205.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcC
Q 005966 386 LAGCVHNGLARKAVELFRQMLVEVVEPND--ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463 (667)
Q Consensus 386 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (667)
++-....|++.+|+..+++... ..|+. .....+..+|...|+++.|...++. .-+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999987653 34443 3456678899999999999986654 23667788889999999999
Q ss_pred CHHHHHHHHhhCCCC--CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005966 464 SLESAHKIFSEIPIK--DK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 540 (667)
+.++|.+.++++... .| +...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999987543 25 456677778999999999999999988 457778999999999999999999999
Q ss_pred HHhHHhcCCCCchh---HHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 541 NFMLENHQTCSRAD---HYTCIVDLLGRAGRLDEAYDLIRTM--PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 541 ~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
+++.+.. |+.. ....++..+...|++++|..+|+++ ..+++...++.++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998842 4432 1223445556679999999999998 245578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCchH-HHHHHHHhhhCCC
Q 005966 616 PENPGNYVLLSKLYSAVRRWKD-AENVRDVMDEKGL 650 (667)
Q Consensus 616 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 650 (667)
|+++.++..++.++...|++++ +.++++++.+..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999976 5689999887653
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1.5e-17 Score=165.80 Aligned_cols=259 Identities=12% Similarity=0.008 Sum_probs=207.3
Q ss_pred HHhCCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCC
Q 005966 389 CVHNGLARKAVE-LFRQMLVEVV-EP--NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464 (667)
Q Consensus 389 ~~~~~~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (667)
+...|++++|++ .|++...... .| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344588899998 8876554321 11 34567788889999999999999999999875 5677889999999999999
Q ss_pred HHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHh
Q 005966 465 LESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS---------------ALHACS 528 (667)
Q Consensus 465 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------ll~~~~ 528 (667)
+++|.+.|+++....| +..++..+...+...|++++|+..++++.+.... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999998877665 5678999999999999999999999999986422 2222211 233444
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005966 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 606 (667)
..|++++|...++++.+.....++..++..++.++.+.|++++|+..++++ ...| +...+..++..+...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999999999985433336788999999999999999999999987 3444 67899999999999999999999
Q ss_pred HHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.++++++..|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999988654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=3.2e-17 Score=163.20 Aligned_cols=234 Identities=12% Similarity=0.018 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHH
Q 005966 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAG 491 (667)
Q Consensus 413 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 491 (667)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++....| +..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 56788999999999999999999999999877665 47889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHH
Q 005966 492 YGMHGHGETAVSLFKEMVQSGVQPNE-----------VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560 (667)
Q Consensus 492 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 560 (667)
|...|++++|+..++++.+.. |+. ..+..+...+...|++++|...++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999999853 332 2233457788999999999999999998543333688899999
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHH
Q 005966 561 DLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 638 (667)
..|...|++++|++.++++ ...| +..+|..++.++...|++++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999997 3344 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCC
Q 005966 639 ENVRDVMDEKG 649 (667)
Q Consensus 639 ~~~~~~~~~~~ 649 (667)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988654
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=3.2e-16 Score=142.63 Aligned_cols=198 Identities=13% Similarity=0.015 Sum_probs=161.4
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005966 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524 (667)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 524 (667)
+++...+..+...+.+.|++++|...|++.....| +...|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56777888899999999999999999999887765 46788899999999999999999999999874 23566888888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005966 525 HACSHG-----------GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALL 592 (667)
Q Consensus 525 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 592 (667)
.++... |++++|+..++++.+. .|.+...+..+..++...|++++|+..|+++ ....++..+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 899999 9999999999999983 3445778899999999999999999999987 2227888999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.++...|++++|+..++++++..|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998753
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.3e-16 Score=144.59 Aligned_cols=219 Identities=9% Similarity=0.003 Sum_probs=149.3
Q ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC--------cchHHHHH
Q 005966 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD--------IVVWSVII 489 (667)
Q Consensus 418 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~l~ 489 (667)
..+...+...|++++|...++...+.. .+...+..+..++...|++++|.+.+++.....|+ ..+|..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333444444444444444444444444 44444555555555555555555555544332221 35667777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCCh
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (667)
..+...|++++|+..|++..+. .|+. ..+...|++++|...++.+.+ ..+.+...+..++..+...|++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 7777888888888888887774 3443 234556778888888888776 3334456677788888888888
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 570 DEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 570 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
++|+..++++ . .+.+..++..++..+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888876 3 3336777888888888888888888888888888888888888888888888888888888888766
Q ss_pred CC
Q 005966 648 KG 649 (667)
Q Consensus 648 ~~ 649 (667)
..
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 43
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.1e-14 Score=150.34 Aligned_cols=390 Identities=10% Similarity=-0.017 Sum_probs=201.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhc-CCCcchhHHHHHH
Q 005966 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG-RLGKNIAAWNALV 254 (667)
Q Consensus 176 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 254 (667)
....||.|...+...|++++|++.|++..+. +...... ..+....+|+.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla 101 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYA 101 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHH
Confidence 3557888888889999999999998876541 0000000 0011234555556
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHh--CCChHHHHHHHHHHHhcCCCCChh-hHHHHH
Q 005966 255 DMYVKCGSVNEARLVFDRMSE-----------RDVVTWTSMINGYAL--NGDVRNALGLFQLMQFEGVRPNSL-TIGSLL 320 (667)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll 320 (667)
.+|...|++++|...+++..+ ....++..+..++.. .+++++|++.|++..+. .|+.. .+..+.
T Consensus 102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~ 179 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLA 179 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 666666666666555554421 112334443333333 34566677776666553 34332 222222
Q ss_pred HH---hhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHH----hcCCHHHHHHHHhccC---CCCcccHHHHHHHHH
Q 005966 321 SA---CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA----KCNLVKLSFQVFARTS---KKKTVPWNAILAGCV 390 (667)
Q Consensus 321 ~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 390 (667)
.+ +...++.+.+...+....+.. +.+..++..+...+. ..+++++|.+.+++.. +.+...+..+...|.
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 22 233344455555555555443 223333333333333 3455666777766543 334444777778888
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHH
Q 005966 391 HNGLARKAVELFRQMLVEVVEPN-DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 469 (667)
..|++++|+..+++..+. .|+ ..++..+...|...+....+ .. . ..........+..+.|.
T Consensus 259 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHH
Confidence 888888888888887764 333 34444444333211110000 00 0 00001111123456777
Q ss_pred HHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHH
Q 005966 470 KIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV--TFTSALH-ACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 470 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~ 545 (667)
..++......| +..++..+...+...|++++|+..|++.++....|... .+..+.. .....|++++|+..|++..+
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777665544 56788999999999999999999999999865433321 2233332 24578999999999999987
Q ss_pred hcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL-KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
+.|+....... ...+.+++++. .. +.+..+|..++..+...|++++|++.++++++++|.+|.+..
T Consensus 401 ---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 401 ---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp ---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred ---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 23443222221 22333444433 22 336778999999999999999999999999999999998877
Q ss_pred HHH
Q 005966 624 LLS 626 (667)
Q Consensus 624 ~l~ 626 (667)
.+|
T Consensus 469 ~~G 471 (472)
T 4g1t_A 469 WNG 471 (472)
T ss_dssp ---
T ss_pred cCC
Confidence 665
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=8.1e-15 Score=143.25 Aligned_cols=258 Identities=9% Similarity=-0.000 Sum_probs=195.6
Q ss_pred ChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccC---CCCcchHHHHHHHH
Q 005966 12 TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMS---ERSSFLYNTVMKMY 85 (667)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 85 (667)
+...+..++..+...|++++|...++++++..|.. ..... ..+...|++++|...|+++. ..+..+|..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999988 22222 88899999999999999864 34677899999999
Q ss_pred HhCCCchHHHHHHHHhHHcCCCCCCcccHHHH--------------HH-HhccccchHHHHHHHHHHHHhCCCCchHHHH
Q 005966 86 AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV--------------IK-ACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (667)
...|++++|++.|+++.+. .+.+...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 9999999999999999986 33344444444 33 4778899999999999999887 55788889
Q ss_pred HHHHHHHhcCCHHHHHHHhcccC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcc
Q 005966 151 CLIAMYMNFGEVKAARKVFDAMW---EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227 (667)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 227 (667)
.+...|...|++++|.+.++... ..+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998763 3466788889999999999999999999887742 2234556666666666677
Q ss_pred hHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005966 228 IEMGRMIHELVAGGRLGK-----------NIAAWNALVDMYVKCGSVNEARLVFDRM 273 (667)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 273 (667)
+++|...++.+.+..... +..++..+..++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777777666666543221 3555666666666666666666666544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.4e-15 Score=141.38 Aligned_cols=235 Identities=10% Similarity=-0.034 Sum_probs=194.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCC--CC----chHHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL--SV----VEVSTGL 455 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 455 (667)
|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++...+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 6667778888899999999999888776 77788888888899999999999999888764321 12 5788889
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (667)
...|.+.|++++|...|+++....|+. ..+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999887765652 45667788999999999998853 2244678888889999999999
Q ss_pred HHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 536 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
|...++++.+. .+.+...+..++.++.+.|++++|+..++++ ...| +...+..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999883 3456778999999999999999999999987 3344 578899999999999999999999999999
Q ss_pred cC------CCCCchHHHHHHH
Q 005966 614 LE------PENPGNYVLLSKL 628 (667)
Q Consensus 614 ~~------p~~~~~~~~l~~~ 628 (667)
+. |++..++..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 99 8777777666654
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=166.83 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=123.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHhccc-------CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHH
Q 005966 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAM-------WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215 (667)
Q Consensus 143 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 215 (667)
..-..+||+||++|++.|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 344568999999999999999999999775 3689999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCcch-HHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHH
Q 005966 216 VSVLPACGYLKEI-EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-----RDVVTWTSMINGYA 289 (667)
Q Consensus 216 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 289 (667)
+++|.++++.|+. +.|.++|+.|.+.|+.||..+|+.++....+.+-++...+++..+.. +.+.+...|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999975 78999999999999999999999999877765444444444333322 12344455666666
Q ss_pred hCC
Q 005966 290 LNG 292 (667)
Q Consensus 290 ~~~ 292 (667)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1e-14 Score=138.54 Aligned_cols=243 Identities=11% Similarity=-0.045 Sum_probs=191.8
Q ss_pred hCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHH
Q 005966 391 HNGLARKAVELFRQMLVEVVE---PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (667)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 347788888888888875321 134567778888888999999999999888875 4567888889999999999999
Q ss_pred HHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005966 468 AHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546 (667)
Q Consensus 468 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 546 (667)
|...|+++....| +..+|..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998877665 5778999999999999999999999999986 455555555555667779999999999888873
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
.+++...+. ++..+...++.++|++.+++. ...|+ ...+..++..+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 334444444 777788888999999999886 33332 467888999999999999999999999999998644
Q ss_pred hHHHHHHHHhhcCCchHHHHHH
Q 005966 621 NYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4467788899999998876
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=167.41 Aligned_cols=146 Identities=10% Similarity=0.132 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CCcchHHHHHH
Q 005966 416 TLNSLLPAYAILADLQQAMNIHCYLI---RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD--KDIVVWSVIIA 490 (667)
Q Consensus 416 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 490 (667)
||+++|.+||+.|++++|.++|+.|. +.|+.||..+|++||++|++.|++++|.++|++|.+.| ||.++||++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 44444444444444444444443332 23444444444444555555555555555555554444 67777777777
Q ss_pred HHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc------hhHHHHHHHHH
Q 005966 491 GYGMHGHG-ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR------ADHYTCIVDLL 563 (667)
Q Consensus 491 ~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~ 563 (667)
++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. ..++..+++.. ++.|+ ..+...|.+.|
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHHHHH
Confidence 78887774 67888999999999999999999888766553 34444444433 33332 33444566777
Q ss_pred hhcC
Q 005966 564 GRAG 567 (667)
Q Consensus 564 ~~~g 567 (667)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7655
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.5e-14 Score=137.26 Aligned_cols=246 Identities=11% Similarity=-0.035 Sum_probs=124.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 005966 351 ETALIDMYAKCNLVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN--DATLNSLLPAYA 425 (667)
Q Consensus 351 ~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~ 425 (667)
.......+...|++++|...|++.. +.+...|..+...+...|++++|++.+++..+.+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344555555666666666655543 22333455555556666666666666665554221111 122444455555
Q ss_pred CcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 005966 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505 (667)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (667)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++.....|+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------------------------ 140 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------------------------ 140 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------------------------
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------------------------
Confidence 5555555555555554443 223344444444555555555555555444443322
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCC---hHHHHHHHHhC---
Q 005966 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR---LDEAYDLIRTM--- 579 (667)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~--- 579 (667)
+...+..+...+...+++++|...++++.+. .+.+...+..+..++...|+ +++|...++++
T Consensus 141 ----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 141 ----------DPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2223333331222223555555555554441 12223334444444444444 44444444443
Q ss_pred -CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 580 -PLKPT------HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 580 -~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
...|+ ...+..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2356677888888999999999999999999999888888877766554
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=8.6e-14 Score=141.68 Aligned_cols=367 Identities=8% Similarity=-0.038 Sum_probs=181.1
Q ss_pred ccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCH---HHHHHHHhhcCCCChhHHHHHHHHHHhCC-----Ch
Q 005966 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV---NEARLVFDRMSERDVVTWTSMINGYALNG-----DV 294 (667)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~ 294 (667)
.+.|++++|..++....+.| +...+..|...|...|+. ++|...|++..+.+...+..+...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 33455555555555554443 223334445555556666 78888887776666666666666444444 67
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHH---HHHHHHHHHHhcCCCCchHHhHHHHHHHhcCC----HHHH
Q 005966 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR---GRSLHAWTIKQNLECEVIVETALIDMYAKCNL----VKLS 367 (667)
Q Consensus 295 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a 367 (667)
++|+..|++..+.|... .+..+-..+...+..+. +...+......| +......+...|...+. .+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 78888888877755322 34444444444333222 222222222222 23344444555554442 2333
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Q 005966 368 FQVFARTSKKKTVPWNAILAGCVHNG---LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444 (667)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 444 (667)
..++......++..+..+...|...| +.++|++.|++..+ .+
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-----------------------------------~g 209 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS-----------------------------------RG 209 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH-----------------------------------CC
Confidence 33344444444444444444454444 44455555554444 44
Q ss_pred CCCCchHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCCCcchHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCH
Q 005966 445 FLSVVEVSTGLIDIYSKC----GSLESAHKIFSEIPIKDKDIVVWSVIIAG-Y--GMHGHGETAVSLFKEMVQSGVQPNE 517 (667)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (667)
+++...+..|..+|... +++++|...|++.. ..++..+..+... + ...+++++|+..|++..+.| +.
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 22333223344444333 45666666666554 2344455555554 3 34667777777777777665 45
Q ss_pred HHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHH
Q 005966 518 VTFTSALHACSHGG-----LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR----AGRLDEAYDLIRTMPLKPTHAVW 588 (667)
Q Consensus 518 ~~~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~ 588 (667)
..+..|...|. .| ++++|...|++.. +-+...+..|..+|.. ..++++|...|++.-...++...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 55555555555 34 7777777777765 2345556666666665 33777788877776333344555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhhccCCCCCchHHHHHHHH--hhcCCchHHHHHHHHhhh
Q 005966 589 GALLGACVI----HGNVELGEVAAKWLFELEPENPGNYVLLSKLY--SAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 589 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 647 (667)
..+...|.. ..|.++|...++++.+.++.+ +...+..+. ...++..+|....++..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 566666553 347788888888887766543 333344333 334466667777666543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.1e-13 Score=129.27 Aligned_cols=221 Identities=13% Similarity=-0.038 Sum_probs=143.4
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCCcchHHHHHHHH
Q 005966 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK----CGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492 (667)
Q Consensus 417 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 492 (667)
+..+...+...|++++|...++...+ +.+...+..+...|.. .+++++|...|++..+. .+...+..+...|
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~ 84 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 33333444444444444444444444 1223344445555555 66666666666655443 2455666666666
Q ss_pred HH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHh
Q 005966 493 GM----HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH----GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564 (667)
Q Consensus 493 ~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (667)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+ .+ +...+..+...|.
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHH
Confidence 66 777777777777777654 55666667777776 7777777777777776 22 3445666777777
Q ss_pred h----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh----c
Q 005966 565 R----AGRLDEAYDLIRTMPLKPTHAVWGALLGACVI----HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA----V 632 (667)
Q Consensus 565 ~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 632 (667)
. .+++++|+..+++.-...++..+..+...+.. .+++++|+..++++.+.+| +.++..++.+|.. .
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcc
Confidence 6 77778887777776322355667777777777 7888888888888877765 5677778888887 7
Q ss_pred CCchHHHHHHHHhhhCCC
Q 005966 633 RRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 633 g~~~~A~~~~~~~~~~~~ 650 (667)
|++++|.+.+++..+.+.
T Consensus 236 ~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCSTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 888888888888776653
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.3e-14 Score=134.92 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=127.1
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
....+..+...+...|++++|...|+++....| +...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666777777777777776655544 45666677777777777777777777777653 2355666777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL-KPTHAVWGALLGACVIHGNVELG 604 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 604 (667)
+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++++ .. +.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777762 2345556777777777777777777777776 22 33566777777777777777888
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888877777777777777777777777788888887777776654
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=6.1e-14 Score=132.96 Aligned_cols=229 Identities=10% Similarity=-0.035 Sum_probs=181.3
Q ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcc----hHHHHHHHHH
Q 005966 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV----VWSVIIAGYG 493 (667)
Q Consensus 418 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~ 493 (667)
......+...|++++|...++...+.. +.+...+..+..+|...|++++|.+.++++....++.. +|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344455666777777777777776654 34555777788888889999999998888766433332 3888999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHH
Q 005966 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (667)
..|++++|+..|++..+.. +.+...+..+...|...|++++|...++++.+ ..+.+...+..++..+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 33567899999999999999999999999987 34456677888883444456999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccC---CCC-----CchHHHHHHHHhhcCCchHHHH
Q 005966 574 DLIRTM-PLKP-THAVWGALLGACVIHGN---VELGEVAAKWLFELE---PEN-----PGNYVLLSKLYSAVRRWKDAEN 640 (667)
Q Consensus 574 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~ 640 (667)
+.++++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|...|++++|.+
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987 4445 56788888888888888 888999999998876 442 2578889999999999999999
Q ss_pred HHHHhhhCCC
Q 005966 641 VRDVMDEKGL 650 (667)
Q Consensus 641 ~~~~~~~~~~ 650 (667)
.++++.+..+
T Consensus 243 ~~~~al~~~p 252 (272)
T 3u4t_A 243 AWKNILALDP 252 (272)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCc
Confidence 9999987654
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.2e-14 Score=132.41 Aligned_cols=199 Identities=9% Similarity=-0.041 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (667)
...+..+...+...|++++|.+.|+++....| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555666667777777777777776655443 45677777778888888888888888887764 23566777777888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELG 604 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 604 (667)
...|++++|..+++++.+ .+..| +...+..++.++...|++++|.+.++++ ...| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776 32333 4566777888888888888888888876 3333 567778888888888888888
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
...++++++..|+++..+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888887754
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=6.5e-14 Score=128.43 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=153.2
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
+...+..+...+...|++++|.+.|+++....| +...|..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345566667777777777777777776655444 35677778888888888888888888888764 3356677778888
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005966 527 CSHG-GLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVE 602 (667)
Q Consensus 527 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 602 (667)
+... |++++|...++++.+ .+..| +...+..++.++...|++++|++.++++ ...| +...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888877 33323 3567778888888888888888888876 3334 5777888888888888999
Q ss_pred HHHHHHHHhhccCC-CCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 603 LGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 603 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999988888888 888888888888888888888888888877544
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.4e-14 Score=134.72 Aligned_cols=213 Identities=12% Similarity=0.010 Sum_probs=149.4
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHc
Q 005966 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMH 495 (667)
Q Consensus 417 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 495 (667)
+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++....| +...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3333444444445555555444444432 33455555666666666777777776666554443 456778888888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 005966 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575 (667)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (667)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988864 346677888888899999999999999999873 335677788899999999999999999
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 576 IRTM-PL-KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 576 ~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
++++ .. +.+..++..+...+...|++++|...++++++..|+++.++..++.+....|
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9887 33 3467789999999999999999999999999999999988888776655444
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=3.6e-14 Score=139.66 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=169.0
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCC-CcchHHHHHHHHHH
Q 005966 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS-LESAHKIFSEIPIKDK-DIVVWSVIIAGYGM 494 (667)
Q Consensus 417 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 494 (667)
+..+...+...|++++|+..++.+++.. +.+...+..+..++.+.|+ +++|+..|+++....| +...|+.+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3334444444555555555555555544 3445566666777777775 7777777777766555 45788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh-cCChHHH-
Q 005966 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR-AGRLDEA- 572 (667)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 572 (667)
.|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++ ..+.+...|+.+..++.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 899999999999988864 23567888888888889999999999999888 334567778888888888 6665777
Q ss_pred ----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC--------C-c
Q 005966 573 ----YDLIRTM-PLKP-THAVWGALLGACVIHG--NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR--------R-W 635 (667)
Q Consensus 573 ----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~ 635 (667)
++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.| + +
T Consensus 256 ~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4667665 4555 5678888888888877 688999999888 888998889999999998874 2 5
Q ss_pred hHHHHHHHHh-hhCC
Q 005966 636 KDAENVRDVM-DEKG 649 (667)
Q Consensus 636 ~~A~~~~~~~-~~~~ 649 (667)
++|+++++++ .+..
T Consensus 335 ~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 335 NKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 8899999988 5543
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.5e-13 Score=121.44 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=145.3
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHH
Q 005966 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559 (667)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 559 (667)
.+..+|..+...+...|++++|++.|++.++.. +-+..++..+..+|.+.|++++|...+..+... .+.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 356788889999999999999999999999874 235678888999999999999999999999873 33456677888
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchH
Q 005966 560 VDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 637 (667)
...+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 3344 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCC
Q 005966 638 AENVRDVMDEKG 649 (667)
Q Consensus 638 A~~~~~~~~~~~ 649 (667)
|++.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999988765
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.4e-13 Score=135.38 Aligned_cols=246 Identities=10% Similarity=0.057 Sum_probs=206.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (667)
|..+...+...|++++|+..+++..... +-+...|..+..++...|+ +++|+..++.+++.. +.+...+..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 7778888888999999999999988752 2345677888888888996 999999999999877 567888999999999
Q ss_pred hcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHH--
Q 005966 461 KCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH-GGLLDEG-- 536 (667)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A-- 536 (667)
+.|++++|+..|+++....| +...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHH
Confidence 99999999999999888765 568899999999999999999999999999753 366789999999888 6665777
Q ss_pred ---HHHHHHhHHhcCCCCchhHHHHHHHHHhhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------C-H
Q 005966 537 ---LDLFNFMLENHQTCSRADHYTCIVDLLGRAG--RLDEAYDLIRTMPLKP-THAVWGALLGACVIHG--------N-V 601 (667)
Q Consensus 537 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g--------~-~ 601 (667)
+..++++++ ..+-+...|..+..++...| ++++|++.+.++...| +...+..++..+.+.| + .
T Consensus 257 ~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 588888887 33446778999999999988 6999999998885555 5667888888888764 3 5
Q ss_pred HHHHHHHHHh-hccCCCCCchHHHHHHHHhhc
Q 005966 602 ELGEVAAKWL-FELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 602 ~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 632 (667)
++|+.+++++ .+++|.....|..++..+...
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999999 999999999999888877654
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=3.4e-13 Score=137.25 Aligned_cols=346 Identities=10% Similarity=-0.049 Sum_probs=233.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch---HHHHHHHHHHHHhcCCCCchHHhHHHHHHHh
Q 005966 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL---KRGRSLHAWTIKQNLECEVIVETALIDMYAK 360 (667)
Q Consensus 284 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (667)
+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...+....+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56677889999999999999988763 23333344444556766 8888888887755 44555666664544
Q ss_pred cC-----CHHHHHHHHhccCCC-CcccHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHH
Q 005966 361 CN-----LVKLSFQVFARTSKK-KTVPWNAILAGCVHNGLAR---KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431 (667)
Q Consensus 361 ~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 431 (667)
.+ ++++|...|++...+ ++..+..+...|...+... ++.+.+......|. ......+...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 44 778999999877643 4456888888888766543 45566666655553 334445555666666555
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHc----CChHHHHH
Q 005966 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG---SLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMH----GHGETAVS 503 (667)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~ 503 (667)
++......+.+.-...++..+..|..+|.+.| +.++|.+.|++....++ +...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 54444443433333444558888999999999 99999999998877764 444446677777554 68999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC-----ChHHHHHH
Q 005966 504 LFKEMVQSGVQPNEVTFTSALHA-C--SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG-----RLDEAYDL 575 (667)
Q Consensus 504 ~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~ 575 (667)
+|++.. .| +...+..+... + ...+++++|...|++..+ .+ +...+..|..+|. .| ++++|++.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 43 44556666665 3 568999999999999987 33 5566777888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh----cCCchHHHHHHHHhhh
Q 005966 576 IRTMPLKPTHAVWGALLGACVI----HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA----VRRWKDAENVRDVMDE 647 (667)
Q Consensus 576 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 647 (667)
|++.- ..++.....+...|.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99988 6688888888877776 34999999999998874 567899999999985 4589999999999988
Q ss_pred CCCc
Q 005966 648 KGLR 651 (667)
Q Consensus 648 ~~~~ 651 (667)
.|..
T Consensus 387 ~g~~ 390 (452)
T 3e4b_A 387 QDTP 390 (452)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 8753
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.3e-13 Score=127.28 Aligned_cols=201 Identities=11% Similarity=-0.027 Sum_probs=134.4
Q ss_pred HHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChH
Q 005966 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGE 499 (667)
Q Consensus 421 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 499 (667)
...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++....| +...+..+...+...|+++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence 333334444444444444443332 23344455555555566666666666655544333 4456666777777777777
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh
Q 005966 500 TAVSLFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
+|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...+++
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777776323443 456677777788888888888888888773 234566777888888888888888888887
Q ss_pred C-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHH
Q 005966 579 M-PLK-PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624 (667)
Q Consensus 579 ~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 624 (667)
+ ... .+...+..+...+...|+.++|...++++++..|+++.....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6 333 366677888888889999999999999999999987765543
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.2e-14 Score=146.99 Aligned_cols=210 Identities=7% Similarity=-0.014 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCH-HHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHH
Q 005966 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL-ESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEM 508 (667)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 508 (667)
+++...++...... +.+...+..+...|...|++ ++|++.|++..+..|+ ...|..+..+|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444333222 34566667777777777777 7777777776655554 678888889999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc--------CChHH
Q 005966 509 VQSGVQPNEVTFTSALHACSHG---------GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA--------GRLDE 571 (667)
Q Consensus 509 ~~~~~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 571 (667)
.+. .|+...+..+...+... |++++|...++++.+. .+.+...|..++.+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 885 46778888888889998 9999999999999883 345677888999999888 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 572 AYDLIRTM-PLKP----THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 572 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|++.++++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999987 4455 78899999999999999999999999999999999999999999999999999999765443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=4.8e-13 Score=122.60 Aligned_cols=207 Identities=11% Similarity=-0.047 Sum_probs=147.2
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHH
Q 005966 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGM 494 (667)
Q Consensus 416 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 494 (667)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++....| +..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444455555555555555555555443 33455566666666677777777777666554443 45667777788888
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHH
Q 005966 495 H-GHGETAVSLFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 495 ~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (667)
. |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++.++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888887323343 456777888888889999999888888773 334567788888888899999999
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 573 YDLIRTM-PL-K-PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 573 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
.+.++++ .. + .+...+..+...+...|+.+.|...++.+.+..|+++.+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9888886 22 3 4566777777778889999999999999999999987766554
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.2e-12 Score=123.90 Aligned_cols=226 Identities=11% Similarity=-0.064 Sum_probs=182.8
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCCCCCchHHHH
Q 005966 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI----LADLQQAMNIHCYLIRYGFLSVVEVSTG 454 (667)
Q Consensus 379 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (667)
+..+..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344566677777788888888888887762 244566667777777 888888888888887765 5677778
Q ss_pred HHHHHHh----cCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 455 LIDIYSK----CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM----HGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 455 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
+...|.. .+++++|...|++.... .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 8888888 89999999999887765 367788888888988 999999999999999875 56677777778
Q ss_pred Hhc----cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 005966 527 CSH----GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR----AGRLDEAYDLIRTMPLKPTHAVWGALLGACVI- 597 (667)
Q Consensus 527 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 597 (667)
|.. .+++++|...+++..+. .+...+..+..+|.. .+++++|++.+++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 877 89999999999999873 245667888999999 99999999999987322347788888889988
Q ss_pred ---cCCHHHHHHHHHHhhccCCCC
Q 005966 598 ---HGNVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 598 ---~g~~~~A~~~~~~~~~~~p~~ 618 (667)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999874
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.4e-14 Score=143.83 Aligned_cols=265 Identities=13% Similarity=0.031 Sum_probs=184.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhCcCCHHHHHHHHHHHHHh----C-CCCCchHHH
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPND----ATLNSLLPAYAILADLQQAMNIHCYLIRY----G-FLSVVEVST 453 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 453 (667)
..+...+...|++++|+..|++..+.... +. ..+..+...+...|++++|...++...+. + .+.....+.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34555666677777777777777664211 22 35666666777777777777777766542 1 122345666
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC------C-CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 005966 454 GLIDIYSKCGSLESAHKIFSEIPIKD------K-DIVVWSVIIAGYGMHGH-----------------GETAVSLFKEMV 509 (667)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 509 (667)
.+...|...|++++|...+++..... + ...++..+...+...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 77777888888888887777654431 1 23467777788888888 888888887765
Q ss_pred Hc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHhCC
Q 005966 510 QS----GVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRTMP 580 (667)
Q Consensus 510 ~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (667)
+. +-.|. ..++..+...+...|++++|...+++..+.....++ ...+..++.+|...|++++|.+.+++.-
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11111 246777888888999999999999888763221112 2267788888999999999999888761
Q ss_pred ----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------CchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 581 ----LKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPEN------PGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 581 ----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
...+ ..++..+...+...|++++|...++++++..++. ..++..++.+|...|++++|.+++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 4567788888999999999999999998875543 3378889999999999999999999876
Q ss_pred hC
Q 005966 647 EK 648 (667)
Q Consensus 647 ~~ 648 (667)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=3.2e-13 Score=122.66 Aligned_cols=201 Identities=17% Similarity=0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 4444455555555555555555554321 1223344444444444555555555554444443 2233344444444444
Q ss_pred cCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
.+. . . .. .....|++++|+..+++..+.. +-+...+..+..++...|++++|+..|+
T Consensus 86 ~~~---------~--~--~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 86 LYR---------Q--A--ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHH---------T--C--SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhh---------h--h--hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 400 0 0 00 0000155555555555555432 1123344444555555555555555555
Q ss_pred HhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005966 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKW 610 (667)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 610 (667)
++.+.. .+...+..+..+|...|++++|+..+++. ...| +...+..+...+...|++++|+..+++
T Consensus 143 ~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 143 QALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555422 34444555555555555555555555554 2222 344445555555555555555555544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=1.9e-13 Score=138.03 Aligned_cols=297 Identities=12% Similarity=-0.001 Sum_probs=182.5
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhccC---CCCc----ccHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-H
Q 005966 347 EVIVETALIDMYAKCNLVKLSFQVFARTS---KKKT----VPWNAILAGCVHNGLARKAVELFRQMLVE----VVEPN-D 414 (667)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~ 414 (667)
....+......+...|++++|...|++.. +.+. ..|..+...+...|++++|...+++.... +..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34455666777788888888888887654 2221 23667777778888888888888776432 21222 3
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhC----CC-CCchHHHHHHHHHHhcCC--------------------HHHHH
Q 005966 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYG----FL-SVVEVSTGLIDIYSKCGS--------------------LESAH 469 (667)
Q Consensus 415 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~ 469 (667)
.++..+...+...|++++|...++...+.. .+ .....+..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 456666677777788888888777665421 11 113466667777777777 77777
Q ss_pred HHHhhCCCCC---C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHH
Q 005966 470 KIFSEIPIKD---K----DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV-QPN----EVTFTSALHACSHGGLLDEGL 537 (667)
Q Consensus 470 ~~~~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~ 537 (667)
+.+++..... + ...++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 7666543221 1 124566667777777777777777777665311 112 125666667777777777777
Q ss_pred HHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHH
Q 005966 538 DLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRTMP----LKPT----HAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 538 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~ 605 (667)
..+++..+.....++ ..++..++..|...|++++|.+.+++.- ..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777776542211111 3456667777777777777777776651 1112 345666667777777777777
Q ss_pred HHHHHhhccCCCCC------chHHHHHHHHhhcCCchHHHHHHH
Q 005966 606 VAAKWLFELEPENP------GNYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 606 ~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
..+++++++.+... .++..++.+|...|+...+...+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 77777777777753 245566666766666665544443
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=1.6e-13 Score=130.26 Aligned_cols=222 Identities=9% Similarity=-0.025 Sum_probs=182.9
Q ss_pred HhCcCCHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChH
Q 005966 424 YAILADLQQAMNIHCYLIRYGF---LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGE 499 (667)
Q Consensus 424 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 499 (667)
....|++++|...++.+.+... +.+...+..+...+...|++++|...|+++....| +..+|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456899999999999987632 22567888899999999999999999999877665 4788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. |+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999974 3357789999999999999999999999998832 44334444555667789999999999776
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----CCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 580 -P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE----NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 580 -~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
. .+++...+ .++..+...++.++|...++++++..|. ++.++..++.+|...|++++|...++++.+...
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 2 33343344 4777788889999999999999988774 367899999999999999999999999988653
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=2.4e-13 Score=133.27 Aligned_cols=265 Identities=15% Similarity=0.073 Sum_probs=190.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhCcCCHHHHHHHHHHHHHh----CCC-CCchHHHH
Q 005966 384 AILAGCVHNGLARKAVELFRQMLVEVVEPN----DATLNSLLPAYAILADLQQAMNIHCYLIRY----GFL-SVVEVSTG 454 (667)
Q Consensus 384 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 454 (667)
.....+...|++++|+..|++..+.... + ...+..+...+...|++++|...++...+. +.. .....+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3455666677777777777777665211 2 245666667777777777777777765432 211 22456677
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---CC----cchHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 005966 455 LIDIYSKCGSLESAHKIFSEIPIKD---KD----IVVWSVIIAGYGMHGH--------------------GETAVSLFKE 507 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 507 (667)
+...|...|++++|...+++..... ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7788888888888888877654432 12 2367778888888888 8888888887
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHh
Q 005966 508 MVQS----GVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 508 m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
..+. +..|. ..++..+...+...|++++|...++++.+.....++ ...+..++..+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 21111 246777888899999999999999988763211122 23677888999999999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------CchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 579 MP----LKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPEN------PGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 579 ~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
.. ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 61 1122 4467788888999999999999999998876553 33788999999999999999999999
Q ss_pred hhhCC
Q 005966 645 MDEKG 649 (667)
Q Consensus 645 ~~~~~ 649 (667)
..+..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 87754
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=2.8e-13 Score=119.79 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=143.8
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
+..+|..+...|.+.|++++|++.|++..+..| +..+|..+..++.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456778888888888999999988888777665 46788889999999999999999999998864 3355677777888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELG 604 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 604 (667)
+...++++.|...+.+..+ ..+.+...+..++.+|.+.|++++|++.|++. ...| +..+|..++.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8999999999999999987 34456778889999999999999999999987 4445 677899999999999999999
Q ss_pred HHHHHHhhccCCCCC
Q 005966 605 EVAAKWLFELEPENP 619 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~ 619 (667)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999864
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=138.28 Aligned_cols=266 Identities=13% Similarity=0.007 Sum_probs=155.0
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCC---chHHhHHHHHHHhcCCHHHHHHHHhccCC-----CC----ccc
Q 005966 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE---VIVETALIDMYAKCNLVKLSFQVFARTSK-----KK----TVP 381 (667)
Q Consensus 314 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~ 381 (667)
..+...-..+...|+++.|...++.+.+...... ..++..+...|...|++++|...+++... .+ ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344445556667777777777777766532211 24566666777777777777776665421 11 122
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhCcCC--------------------HHHHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVV-EPN----DATLNSLLPAYAILAD--------------------LQQAMNI 436 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~ 436 (667)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56666677777777777777776554210 011 2355566666667777 7777777
Q ss_pred HHHHHHh----CC-CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CC----cchHHHHHHHHHHcCChHHHHHH
Q 005966 437 HCYLIRY----GF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KD----IVVWSVIIAGYGMHGHGETAVSL 504 (667)
Q Consensus 437 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~ 504 (667)
++...+. +. +.....+..+...|...|++++|...+++..... ++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6665432 11 1123456666677777777777777776654332 11 12566666677777777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHH
Q 005966 505 FKEMVQSGVQ-PN----EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDL 575 (667)
Q Consensus 505 ~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 575 (667)
+++..+.... ++ ..++..+...|...|++++|...++++.+.....++ ...+..+..+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7766542110 11 235566666677777777777777766552211111 34556666777777777777776
Q ss_pred HHhC
Q 005966 576 IRTM 579 (667)
Q Consensus 576 ~~~~ 579 (667)
+++.
T Consensus 330 ~~~a 333 (406)
T 3sf4_A 330 AEKH 333 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=3e-10 Score=119.33 Aligned_cols=419 Identities=9% Similarity=-0.009 Sum_probs=269.9
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcc---hHHHHHHHHHHHhcCC-CcchhHH
Q 005966 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE---IEMGRMIHELVAGGRL-GKNIAAW 250 (667)
Q Consensus 175 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 250 (667)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+.... +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 48889999999999999999999999999875 34455667777777777777 9999999999888752 4677788
Q ss_pred HHHHHHHHhcCCH--------HHHHHHHhhcC------CC-ChhHHHHHHHHHHh---------CCChHHHHHHHHHHHh
Q 005966 251 NALVDMYVKCGSV--------NEARLVFDRMS------ER-DVVTWTSMINGYAL---------NGDVRNALGLFQLMQF 306 (667)
Q Consensus 251 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 306 (667)
...+....+.++. +...++|+... .+ +...|...+.-... .++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665543 33446666532 22 34567776654432 2346677788888764
Q ss_pred cCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhc-------cCC---
Q 005966 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR-------TSK--- 376 (667)
Q Consensus 307 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~--- 376 (667)
.....-..+|..... +.+.-+...+..++.+. ..+++.|...+.. +..
T Consensus 223 iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211111122211111 11100001111111110 0112222222211 110
Q ss_pred C-------------C------cccHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCH
Q 005966 377 K-------------K------TVPWNAILAGCVHNG-------LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430 (667)
Q Consensus 377 ~-------------~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 430 (667)
. + ...|...+.---..+ ..+.+..+|++.... ++-+...|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 011444444333222 123456677777664 334556666666667777888
Q ss_pred HHHH-HHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----------CC------------cchHH
Q 005966 431 QQAM-NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-----------KD------------IVVWS 486 (667)
Q Consensus 431 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~------------~~~~~ 486 (667)
+.|. .+++...... +.+...+...+....+.|++++|.++|+.+.... |+ ..+|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 9999988654 5667777788888999999999999999876531 31 23688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH-GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (667)
..+....+.|+.+.|..+|.+.++....+....|...+..-.+ .++.+.|..+|+..++. ++.+...|...++....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHh
Confidence 8888888899999999999999886112223344333332223 35689999999999984 44456678888898889
Q ss_pred cCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 566 AGRLDEAYDLIRTM-PLKP----THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 566 ~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
.|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 99999999999997 3333 2357888888888999999999999999999999653
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=1.3e-12 Score=138.97 Aligned_cols=163 Identities=16% Similarity=0.181 Sum_probs=144.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
..+|+.+...+.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..|+++++. .+.+...|..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 5678889999999999999999999999864 224578899999999999999999999999883 3345778999999
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHH
Q 005966 562 LLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 639 (667)
+|.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++++|+++.++..|+.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999987 5556 67789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 005966 640 NVRDVMDE 647 (667)
Q Consensus 640 ~~~~~~~~ 647 (667)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2.9e-11 Score=116.53 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------CcCCH-------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYA-------ILADL-------QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 396 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 334445555555443 34664 7888888888773224456678888888888
Q ss_pred cCCHHHHHHHHhhCCCCCCC-cc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKDKD-IV-VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLD 538 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~ 538 (667)
.|++++|.++|+++....|+ .. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888776664 33 78888888888889999999999888764 23444454333332 23688999999
Q ss_pred HHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP----LKP--THAVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
+|+++.+.. +.+...|..++..+.+.|++++|..+|++.- ..| ....|..++....+.|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998888733 3456778888888888899999998888872 244 35678888888888899999999999999
Q ss_pred ccCCCCCchH
Q 005966 613 ELEPENPGNY 622 (667)
Q Consensus 613 ~~~p~~~~~~ 622 (667)
+..|+++...
T Consensus 269 ~~~p~~~~~~ 278 (308)
T 2ond_A 269 TAFREEYEGK 278 (308)
T ss_dssp HHTTTTTSSC
T ss_pred HHcccccccc
Confidence 8888865443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.5e-11 Score=118.55 Aligned_cols=216 Identities=9% Similarity=-0.013 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC-CCCC-cchHHHHHHHHHH
Q 005966 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYS-------KCGSL-------ESAHKIFSEIPI-KDKD-IVVWSVIIAGYGM 494 (667)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~-~~~~~~l~~~~~~ 494 (667)
++|..+|+..++.. +.++..+..++..+. +.|++ ++|..+|++... ..|+ ...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888887764 567778888887775 35886 899999999888 4665 4689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHh-hcCChHH
Q 005966 495 HGHGETAVSLFKEMVQSGVQPN-EV-TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG-RAGRLDE 571 (667)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 571 (667)
.|++++|..+|++.++. .|+ .. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 454 33 7888999999999999999999999882 3345555654444432 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCC-CCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 572 AYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFEL---EPE-NPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 572 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
|..+|++. ...| +...|..++..+.+.|+.++|+.+|+++++. .|+ ....+..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3334 6788999999999999999999999999996 453 5668889999999999999999999999
Q ss_pred hhCCCc
Q 005966 646 DEKGLR 651 (667)
Q Consensus 646 ~~~~~~ 651 (667)
.+....
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 876643
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.6e-09 Score=113.80 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=59.3
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccc---hHHHHHHHHHHHHhCC-CCchHHH
Q 005966 74 SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW---RKLGIALHGRVLITGF-DMDTFVG 149 (667)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 149 (667)
|..+|..++..+.+.+.++.+..+|+++... .|.....|..-+..-.+.++ ++.+..+|++.+...+ +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 6667888888777777888888888888776 56666667777776667777 7778888877776541 3666677
Q ss_pred HHHHHHHHhcCC
Q 005966 150 NCLIAMYMNFGE 161 (667)
Q Consensus 150 ~~li~~~~~~g~ 161 (667)
...+....+.++
T Consensus 143 ~~Yl~f~~~~~~ 154 (679)
T 4e6h_A 143 LSYITYVRKKND 154 (679)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 766665555444
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=1.7e-12 Score=114.67 Aligned_cols=130 Identities=16% Similarity=0.026 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGAC 595 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 595 (667)
..+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 33444444444444444454444444441 1223344444555555555555555555544 1 223455666666677
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
...|++++|...++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777777777777777777777777777777777777777777777777766544
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=3.9e-11 Score=119.87 Aligned_cols=234 Identities=10% Similarity=0.026 Sum_probs=125.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 005966 385 ILAGCVHNGLARKAVELFRQMLVEVV-EPN----DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459 (667)
Q Consensus 385 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (667)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...++...+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------- 173 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY--------------- 173 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------
Confidence 44556677888888888887765310 122 2355556666666666666666665544321
Q ss_pred HhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCCH
Q 005966 460 SKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV-QPNE----VTFTSALHACSHGGLL 533 (667)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~g~~ 533 (667)
....... ....+++.+...|...|++++|+..+++..+... .++. .++..+..+|...|++
T Consensus 174 -------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 174 -------------KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp -------------HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -------------HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 1100000 0112344455555555555555555555443210 0111 2455566666666666
Q ss_pred HHHHHHHHHhHHh---cCC-CCchhHHHHHHHHHhhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC--
Q 005966 534 DEGLDLFNFMLEN---HQT-CSRADHYTCIVDLLGRAGRLDEAYDLIRTMP----L--KPT-HAVWGALLGACVIHGN-- 600 (667)
Q Consensus 534 ~~A~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~l~~~~~~~g~-- 600 (667)
++|...+++..+. .+. +....++..++.+|.+.|++++|.+.+++.- . .|. ...+..+...+...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 6666666665541 122 2234455566666666666666666666541 1 111 1123445555666666
Q ss_pred -HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 601 -VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 601 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.++|+..+++. ...|....++..++.+|...|++++|.+++++..+
T Consensus 321 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 321 AIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666655 22333345666777777777777777777777653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=131.55 Aligned_cols=239 Identities=15% Similarity=0.097 Sum_probs=127.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVE-------VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (667)
+..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...++...+..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------- 99 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR---------- 99 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 666777777778888888777776652 112223345555555556666666666655554320
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-CCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHH
Q 005966 455 LIDIYSKCGSLESAHKIFSEIP-IKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS------GVQPN-EVTFTSALH 525 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~ 525 (667)
.... ... ....++..+...+...|++++|...++++.+. +-.|+ ...+..+..
T Consensus 100 ------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 100 ------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp ------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 0000 000 11234455555555556666666555555542 11122 234556666
Q ss_pred HHhccCCHHHHHHHHHHhHHhc-----C-CCCchhHHHHHHHHHhhcCChHHHHHHHHhCC----------CCCCH----
Q 005966 526 ACSHGGLLDEGLDLFNFMLENH-----Q-TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP----------LKPTH---- 585 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~~---- 585 (667)
.+...|++++|..+++++.+.. + .+.....+..++.+|...|++++|.+.++++. ..|..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 6667777777777776665521 1 11223456666667777777777776666541 11111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 586 ---AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 586 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
..+......+...+.+.++...++++....|.++.++..++.+|.+.|++++|.+++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112222333344556666777777777778888888888899999999999999988887653
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=8.2e-12 Score=114.59 Aligned_cols=167 Identities=12% Similarity=-0.017 Sum_probs=96.6
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
+..|......+...|++++|+..|++..+....++...+..+..++...|++++|+..+++..+ ..+.+...+..++.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3445555555555566666666666555544324455554455555566666666666665555 22233445555555
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CCchHHHHHHHHh
Q 005966 562 LLGRAGRLDEAYDLIRTM-PLKP-TH-------AVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYS 630 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 630 (667)
+|...|++++|++.+++. ...| +. ..+..+...+...|++++|+..++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 666666666666655554 2223 23 23455555555666666666666666666666 5566666666666
Q ss_pred hcCCc---------------------------hHHHHHHHHhhhCCC
Q 005966 631 AVRRW---------------------------KDAENVRDVMDEKGL 650 (667)
Q Consensus 631 ~~g~~---------------------------~~A~~~~~~~~~~~~ 650 (667)
..|+. ++|+..+++..+..+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55555 999999999887653
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=1.3e-12 Score=130.72 Aligned_cols=191 Identities=8% Similarity=-0.037 Sum_probs=148.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-----HHHHH
Q 005966 455 LIDIYSKCGSLESAHKIFSEIPIKD---KD----IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV-QPN-----EVTFT 521 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-----~~~~~ 521 (667)
....+...|++++|...|++..... ++ ..++..+...+...|++++|+..+++..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5666778888888888888765531 22 35788888999999999999999998876311 112 24688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHhC-C-----CC-C-CHHHHH
Q 005966 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRTM-P-----LK-P-THAVWG 589 (667)
Q Consensus 522 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~-p-~~~~~~ 589 (667)
.+...|...|++++|...++++.+.....++ ..++..++.+|...|++++|++.+++. . .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998763221122 247888999999999999999999886 1 22 4 345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC-----CCCchHHHHHHHHhhcCC---chHHHHHHHHh
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEP-----ENPGNYVLLSKLYSAVRR---WKDAENVRDVM 645 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 645 (667)
.++..+...|++++|...+++++++.+ .....+..++.+|...|+ +++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 899999999999999999999998743 333346679999999999 88888888775
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1e-11 Score=114.01 Aligned_cols=209 Identities=8% Similarity=0.017 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHH
Q 005966 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIA 490 (667)
Q Consensus 412 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 490 (667)
.|...+......+...|++++|...|+...+...+++...+..+..++.+.|++++|.+.|++.....|+ ...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3556777788888889999999999999888774467777777888899999999999999888776654 567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--chhHHHHHHH
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNE-------VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS--RADHYTCIVD 561 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 561 (667)
.+...|++++|+..+++..+... .+. ..|..+...+...|++++|+..|+++.+ ..+. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 88999999999999999888642 233 3467777778888999999999998876 2223 3566777777
Q ss_pred HHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 562 LLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
+|...|+. .++++. ...+...+... .....+.+++|+..+++++++.|+++.+...++.+..
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 77665543 223321 11233333322 2344567899999999999999999988888877654
No 75
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=2.1e-12 Score=130.62 Aligned_cols=263 Identities=11% Similarity=0.032 Sum_probs=171.3
Q ss_pred HHHHHhcCCHHHHHHHHhccC---CCCc----ccHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 005966 355 IDMYAKCNLVKLSFQVFARTS---KKKT----VPWNAILAGCVHNGLARKAVELFRQMLVE----VVEP-NDATLNSLLP 422 (667)
Q Consensus 355 ~~~~~~~g~~~~a~~~~~~~~---~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~ 422 (667)
...+...|++++|...|++.. ..+. ..|..+...+...|++++|+..+++..+. +..| ....+..+..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 334444555555555554433 1111 12455555566666666666666655432 1111 2234555666
Q ss_pred HHhCcCCHHHHHHHHHHHHHh----C-CCCCchHHHHHHHHHHhcCC-----------------HHHHHHHHhhCCCCC-
Q 005966 423 AYAILADLQQAMNIHCYLIRY----G-FLSVVEVSTGLIDIYSKCGS-----------------LESAHKIFSEIPIKD- 479 (667)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~~- 479 (667)
.+...|++++|...++...+. + .+.....+..+...|...|+ +++|.+.+++.....
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666677777777766665432 1 12234466667777777777 777777766543321
Q ss_pred ------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 005966 480 ------KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PN----EVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548 (667)
Q Consensus 480 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 548 (667)
....++..+...+...|++++|+..+++..+.... ++ ..++..+...|...|++++|...++++.+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 12346778888899999999999999888763211 12 13678888899999999999999998876322
Q ss_pred CCC----chhHHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 005966 549 TCS----RADHYTCIVDLLGRAGRLDEAYDLIRTMP----LKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 549 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 616 (667)
... ....+..++.+|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 111 14567788999999999999999998861 1112 34677888889999999999999999998876
Q ss_pred C
Q 005966 617 E 617 (667)
Q Consensus 617 ~ 617 (667)
.
T Consensus 375 ~ 375 (411)
T 4a1s_A 375 X 375 (411)
T ss_dssp H
T ss_pred h
Confidence 6
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=4.1e-11 Score=105.68 Aligned_cols=171 Identities=16% Similarity=0.018 Sum_probs=147.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (667)
...+..+...+...|++++|...++++....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999988765 56788889999999999999999999999874 34667888899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 605 (667)
...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999883 4456778889999999999999999999987 3 3346788999999999999999999
Q ss_pred HHHHHhhccCCCCCchH
Q 005966 606 VAAKWLFELEPENPGNY 622 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~ 622 (667)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999876544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=2.6e-10 Score=113.43 Aligned_cols=57 Identities=26% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCC------CchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 589 GALLGACVIHGNVELGEVAAKWLFELEPEN------PGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 589 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|...+++.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444555555555555444332211 113344444555555555555554443
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=6.4e-12 Score=122.95 Aligned_cols=236 Identities=12% Similarity=0.018 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCC-C----CchH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVE----VVEP-NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL-S----VVEV 451 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~ 451 (667)
+..+...+...|++++|.+.+++.... +..| ...++..+...+...|++++|...++...+.... + ...+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 444555555566666666665554322 1111 1234555556666667777776666665432110 1 1235
Q ss_pred HHHHHHHHHhcCC--------------------HHHHHHHHhhCCCCC---C----CcchHHHHHHHHHHcCChHHHHHH
Q 005966 452 STGLIDIYSKCGS--------------------LESAHKIFSEIPIKD---K----DIVVWSVIIAGYGMHGHGETAVSL 504 (667)
Q Consensus 452 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~ 504 (667)
+..+...|...|+ +++|.+.+++..... + ...++..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666677777777 777777666543221 1 234677788888899999999999
Q ss_pred HHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHH
Q 005966 505 FKEMVQSGV-QPN----EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDL 575 (667)
Q Consensus 505 ~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 575 (667)
+++..+... .++ ..++..+...+...|++++|...+++..+.....++ ...+..++..+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 988775311 111 236777888899999999999999988763221112 45677888999999999999999
Q ss_pred HHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 576 IRTMP----LKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 576 ~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
++++- ..++ ..++..+...+...|++++|...+++++++.++
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88761 1112 346778888899999999999999999988765
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=2.3e-11 Score=124.62 Aligned_cols=211 Identities=16% Similarity=0.032 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHh
Q 005966 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL-QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473 (667)
Q Consensus 395 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (667)
.++++..+++.... .+.+...+..+...+...|++ ++|...++...+.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666777665543 234667777888888888888 99999888888775 4567788889999999999999999999
Q ss_pred hCCCCCCCcchHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCHHHH
Q 005966 474 EIPIKDKDIVVWSVIIAGYGMH---------GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG--------GLLDEG 536 (667)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~~~A 536 (667)
+.....|+...+..+...+... |++++|+..|++..+.. +.+...|..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 8888778878888888888888 99999999999998864 33567788888888888 889999
Q ss_pred HHHHHHhHHhcCCC---CchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005966 537 LDLFNFMLENHQTC---SRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKW 610 (667)
Q Consensus 537 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 610 (667)
...|+++.+. .+ .+...|..+..+|...|++++|++.|++. ...| +...+..+...+...|++++|+..+++
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999873 22 36778888999999999999999999887 4445 566788888888888888888876544
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=5.3e-12 Score=122.12 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=151.5
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhccCC--------CCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHC------C
Q 005966 347 EVIVETALIDMYAKCNLVKLSFQVFARTSK--------KKT---VPWNAILAGCVHNGLARKAVELFRQMLVE------V 409 (667)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 409 (667)
...++..+...|...|++++|...|++... .++ ..+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999987753 222 23788899999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CCcchHH
Q 005966 410 VEP-NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP-IKD-KDIVVWS 486 (667)
Q Consensus 410 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ 486 (667)
-.| ...++..+...+...|++++|...++...+.. .... ... .....+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHH
Confidence 222 23456666667777777777777776655421 0000 000 1223455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCC-c
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQS------GVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENH------QTCS-R 552 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~-~ 552 (667)
.+...+...|++++|+.+++++.+. +..|+ ..++..+...+...|++++|...++++.+.. ...+ .
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 5666666777777777777766653 11222 2456777777888888888888888776521 1111 1
Q ss_pred hh------HHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 553 AD------HYTCIVDLLGRAGRLDEAYDLIRTMP-LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 553 ~~------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.. .+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 12223333445556666666666663 334 4557888999999999999999999999998775
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=2.4e-11 Score=121.06 Aligned_cols=224 Identities=9% Similarity=-0.035 Sum_probs=147.4
Q ss_pred HHhCcCCHHHHHHHHHHHHHhCC--C---CCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CC-----cchHHHHH
Q 005966 423 AYAILADLQQAMNIHCYLIRYGF--L---SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KD-----IVVWSVII 489 (667)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----~~~~~~l~ 489 (667)
.+...|++++|...++...+... + ....++..+...|...|+++.|...+++..... ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34556677777776666654211 1 123456666777777777777776666543321 11 34667777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCchhHHHHHHH
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGV-QPN----EVTFTSALHACSHGGLLDEGLDLFNFMLENH---QTCSRADHYTCIVD 561 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~ 561 (667)
..|...|++++|++.+++..+... .++ ..++..+..+|...|++++|...+++..+.. +.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888888888888888887765210 111 2357777888888889998888888876511 22233566777888
Q ss_pred HHhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 562 LLGRAGRLDEAYDLIRTM----PL--KPT-HAVWGALLGACVIHGN---VELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
++.+.|++++|...+++. .. .|. ...+..+...+...|+ .++|+..+++. ...|+....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888899999998888876 11 222 2344555555667777 77777777762 2233345567788999999
Q ss_pred cCCchHHHHHHHHhhh
Q 005966 632 VRRWKDAENVRDVMDE 647 (667)
Q Consensus 632 ~g~~~~A~~~~~~~~~ 647 (667)
.|++++|.+++++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888764
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=5.4e-10 Score=103.84 Aligned_cols=176 Identities=8% Similarity=0.018 Sum_probs=80.4
Q ss_pred HHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 468 AHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 468 A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
|+..|++....+ ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444332 333333444555555555555555555554433211 223444455555555555555555555544
Q ss_pred hcCCCC-----chhHHHHHHHH--Hh--hcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-
Q 005966 546 NHQTCS-----RADHYTCIVDL--LG--RAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL- 614 (667)
Q Consensus 546 ~~~~~~-----~~~~~~~l~~~--~~--~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 614 (667)
. .| +..+...++.+ .. ..+++.+|..+|+++ ...|+...-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 23 12222223222 11 122555555555555 23333222222223455555555555555554443
Q ss_pred ---------CCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 615 ---------EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 615 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+|+|+.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 25555555555555555554 555555555544
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=5.7e-10 Score=101.82 Aligned_cols=188 Identities=9% Similarity=-0.030 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 005966 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI----VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE--VTFTSA 523 (667)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l 523 (667)
..+..+...+.+.|++++|...|+++....|+. ..+..+..++.+.|++++|+..|+++.+..+.... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344555666677777777777777666544432 35566666777777777777777777664322111 133333
Q ss_pred HHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCH
Q 005966 524 LHACSH------------------GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585 (667)
Q Consensus 524 l~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 585 (667)
..++.. .|++++|...|+++++.. |-+...+....... .....+ .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----HHHHHH-----------H
Confidence 344332 345555555555555422 11111111111000 000000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---chHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCC
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENP---GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 654 (667)
.....+...+.+.|+++.|+..++++++..|+++ .++..++.+|.+.|++++|++.++++...+.....
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0113456678899999999999999999999976 57999999999999999999999999887765443
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=1.3e-10 Score=110.85 Aligned_cols=190 Identities=11% Similarity=-0.023 Sum_probs=123.7
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC-----C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 005966 458 IYSKCGSLESAHKIFSEIPIKD-----K--DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV---QPN--EVTFTSALH 525 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~ 525 (667)
.|...|++++|.+.|.+..... + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666555555443221 1 134667777777778888888887777765311 111 246777888
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 005966 526 ACSHG-GLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT---H-----AVWGAL 591 (667)
Q Consensus 526 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l 591 (667)
.|... |++++|+..|++..+......+ ..++..++..+.+.|++++|+..+++. ...|+ . ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999888763211111 346778888999999999999998886 22332 1 156777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCCch-----HHHHHHHHh--hcCCchHHHHHHHHhhh
Q 005966 592 LGACVIHGNVELGEVAAKWLFELEPENPGN-----YVLLSKLYS--AVRRWKDAENVRDVMDE 647 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 647 (667)
+.++...|++++|+..+++++++.|+.+.. +..++..|. ..+++++|+..++++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 778888999999999999999999886553 344555554 45678888888876654
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=9.4e-10 Score=109.48 Aligned_cols=231 Identities=8% Similarity=0.012 Sum_probs=173.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC--C---C-CCchHH
Q 005966 384 AILAGCVHNGLARKAVELFRQMLVEVV-EPN----DATLNSLLPAYAILADLQQAMNIHCYLIRYG--F---L-SVVEVS 452 (667)
Q Consensus 384 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 452 (667)
.....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...++...+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556778889999998888765411 122 3466777788888999999998888776421 1 1 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC---CC----cchHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 005966 453 TGLIDIYSKCGSLESAHKIFSEIPIKD---KD----IVVWSVIIAGYGMHGHGETAVSLFKEMVQ-----SGVQPNEVTF 520 (667)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 520 (667)
..+..+|...|++++|.+.|++..... ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 788889999999999999887765421 12 34678888999999999999999999887 32 2235678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCC---CCchhHHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 005966 521 TSALHACSHGGLLDEGLDLFNFMLENHQT---CSRADHYTCIVDLLGRAGR---LDEAYDLIRTMPLKPTH-AVWGALLG 593 (667)
Q Consensus 521 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 593 (667)
..+...+.+.|++++|...+++..+.... +.....+..+...+...|+ +++|+..+++....|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88999999999999999999999874332 2223456667777888888 99999999997654433 35677888
Q ss_pred HHHhcCCHHHHHHHHHHhhccC
Q 005966 594 ACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
.|...|++++|...++++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999987643
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=9.9e-11 Score=111.24 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=155.4
Q ss_pred hCcCCHHHHHHHHHHHHHh-------CCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CC-CcchHHHH
Q 005966 425 AILADLQQAMNIHCYLIRY-------GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK--------DK-DIVVWSVI 488 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~l 488 (667)
...|++++|...+++..+. ..+....++..+...|...|++++|...++++... .| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766541 22335677888999999999999999998876543 12 34578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----C-CCCchhH
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQS------GVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENH-----Q-TCSRADH 555 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~ 555 (667)
...+...|++++|+..+++..+. .-.|+ ..++..+...+...|++++|...++++.+.. . .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998764 11232 3567888888999999999999999988731 1 2223567
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHhhccCCCC
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTMP----------LKP-THAVWGALLGACVIHG------NVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 618 (667)
+..++.+|...|++++|.+.++++- ..+ ....+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999888761 122 2223443433333322 2344444444444455666
Q ss_pred CchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+.++..++.+|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999998763
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=8.3e-10 Score=109.76 Aligned_cols=262 Identities=8% Similarity=-0.099 Sum_probs=170.7
Q ss_pred HHHHhcCCHHHHHHHHhccC----CCCcc----cHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHH
Q 005966 356 DMYAKCNLVKLSFQVFARTS----KKKTV----PWNAILAGCVHNGLARKAVELFRQMLVEVV-EPND----ATLNSLLP 422 (667)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~ 422 (667)
..+...|++++|...+++.. ..+.. .++.+...+...|++++|...+++...... .++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666666666655432 11111 244555667777888888888777654211 1111 23455666
Q ss_pred HHhCcCCHHHHHHHHHHHHHh----CCC--C-CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC------CcchHHHHH
Q 005966 423 AYAILADLQQAMNIHCYLIRY----GFL--S-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK------DIVVWSVII 489 (667)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~l~ 489 (667)
.+...|++++|...++...+. +.+ | ....+..+...+...|++++|...+++.....+ ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 777888888888888876542 222 2 234556677888889999999988876543221 124567778
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCc--hhHHHHHHH
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFT-----SALHACSHGGLLDEGLDLFNFMLENHQTCSR--ADHYTCIVD 561 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~ 561 (667)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...++.........+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8889999999999999988764222221 1121 2334477899999999999988762211111 224667888
Q ss_pred HHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 562 LLGRAGRLDEAYDLIRTMP-------LKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+...|++++|...+++.. ..++. ..+..+..++...|+.++|...+++++.+.+.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 8999999999999888761 11122 25566677788999999999999999876654
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=2.7e-10 Score=106.88 Aligned_cols=193 Identities=10% Similarity=0.048 Sum_probs=133.4
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 005966 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD----IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV-QPN-EVTF 520 (667)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~ 520 (667)
.+...+..+...+.+.|++++|...|+++....|+ ...+..+..++.+.|++++|+..|++..+..+ .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666677777888888888888877766554 35667777788888888888888888887532 122 2456
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCchh-H--------------HHHHHHHHhhcCChHHHHHHHH
Q 005966 521 TSALHACSH--------GGLLDEGLDLFNFMLENHQTCSRAD-H--------------YTCIVDLLGRAGRLDEAYDLIR 577 (667)
Q Consensus 521 ~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-~--------------~~~l~~~~~~~g~~~~A~~~~~ 577 (667)
..+..++.. .|++++|...|+++++.....+... . +..++..|.+.|++++|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666667777 8888888888888877433222221 1 1456788888999999998888
Q ss_pred hC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHhhccCCCCCc---hHHHHHHHHhhcCCchHHH
Q 005966 578 TM-PLKPT----HAVWGALLGACVIH----------GNVELGEVAAKWLFELEPENPG---NYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 578 ~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 639 (667)
++ ...|+ ...+..++.++... |++++|+..++++++..|+++. +...+..++...|+++++.
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 86 33333 34677777777755 8889999999999999998764 4445566666655554443
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=1.6e-11 Score=103.81 Aligned_cols=140 Identities=11% Similarity=-0.009 Sum_probs=102.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCCh
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (667)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++++ ..|.+...|..++.+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 344556677777777766543 232 23455677777888888888888888777 2334566778888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHhhccCCCCCchHHHHHHHHhhcCC
Q 005966 570 DEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEV-AAKWLFELEPENPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 570 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 634 (667)
++|+..|++. ...| ++..+..+...+.+.|++++|.. .++++++++|+++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4555 56788888888888888766554 4688999999999999888888888875
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=3.6e-10 Score=107.73 Aligned_cols=225 Identities=9% Similarity=-0.050 Sum_probs=136.7
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhCcCCHHHHHHHH
Q 005966 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE----VVEPN-DATLNSLLPAYAILADLQQAMNIH 437 (667)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 437 (667)
++++|...|.+ ....|...|++++|++.|.+..+. |-.++ ..+|..+...|...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36666665443 355566667777776666655432 11111 234444444444455555554444
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCC-
Q 005966 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH-GHGETAVSLFKEMVQSGVQP- 515 (667)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p- 515 (667)
+...+. +...|+...+ ..+++.+...|... |++++|+..|++..+.....
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 443321 1111111111 23567777888885 99999999998887642111
Q ss_pred C----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch-----hHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 005966 516 N----EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA-----DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTH 585 (667)
Q Consensus 516 ~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 585 (667)
+ ..++..+...+...|++++|+..|+++.+.....+.. ..|..++.++...|++++|+..+++. ...|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 2467788888999999999999999998743222222 15677888899999999999999987 455543
Q ss_pred H------HHHHHHHHHH--hcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 586 A------VWGALLGACV--IHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 586 ~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
. .+..++.++. ..+++++|+..++++..++|.+...+..+-
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 2 2444555554 356799999999998888887544444433
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4e-09 Score=98.01 Aligned_cols=244 Identities=9% Similarity=-0.016 Sum_probs=167.5
Q ss_pred HHhcCCHHHHHHHHhccCCCCccc-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHH
Q 005966 358 YAKCNLVKLSFQVFARTSKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436 (667)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 436 (667)
..-.|.+..++.-...+.+.+... -.-+.+++...|++... ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 344677777777555554433333 22234667777766531 12234443444443333 322 5666
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005966 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK---DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513 (667)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 513 (667)
+++..+.+ +++......+..++...|++++|++++.+....+| +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666555 45556666888999999999999999998866554 4567788899999999999999999999885
Q ss_pred CC-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC--
Q 005966 514 QP-----NEVTFTSALHAC--SH--GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL-- 581 (667)
Q Consensus 514 ~p-----~~~~~~~ll~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 581 (667)
.| +..+...+..++ .. .+++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 355666666553 33 34999999999998762 254223334445899999999999999865 21
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 582 --------KP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 582 --------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
.| ++.++..++......|+ .|.+.++++.+..|++|.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 24 56677667666666787 889999999999999876655
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=3e-10 Score=120.92 Aligned_cols=161 Identities=10% Similarity=0.007 Sum_probs=128.0
Q ss_pred CCCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccC---CCCcchHHHHH
Q 005966 9 LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMS---ERSSFLYNTVM 82 (667)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 82 (667)
-|.+..++.++...+...|++++|...|+++++..|.+ ....+ .+|.+.|++++|+..|++.. ..+..+|..+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 37888999999999999999999999999999999988 33333 78888888888888888753 23566888888
Q ss_pred HHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 005966 83 KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 162 (667)
.++.+.|++++|++.|++.++. .+-+..+|..+..++...|++++|+..|+++++.. +-+...+..+..+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888888876 34456778888888888888888888888888876 45667777788888888888
Q ss_pred HHHHHHhccc
Q 005966 163 KAARKVFDAM 172 (667)
Q Consensus 163 ~~A~~~~~~~ 172 (667)
++|.+.+++.
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766543
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=2e-10 Score=123.08 Aligned_cols=148 Identities=11% Similarity=-0.072 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
...|..+..++...|++++|+..|++..+.. +-+...|..+..++...|++++|...|+++.+. .+.+...+..+..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAA 509 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 3445555555555555555555555555532 113344555555555555555555555555542 2223444555555
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 562 LLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
+|.+.|++++ ++.|+++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555 5555554 2233 34455555555555555555555555555555555555555555554433
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=7.6e-10 Score=91.53 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=80.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVI 597 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 597 (667)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++ . .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555441 1223444555555555555555555555554 1 22245566666777777
Q ss_pred cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.|++++|...++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7788888888888877777777777788888888888888888887776543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=8.6e-10 Score=103.37 Aligned_cols=169 Identities=12% Similarity=0.014 Sum_probs=138.9
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhH
Q 005966 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN---EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADH 555 (667)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 555 (667)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|...|++++|...|+++.+.....|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34567777888899999999999999999986422 2 467888889999999999999999999985443333 456
Q ss_pred HHHHHHHHhh--------cCChHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 005966 556 YTCIVDLLGR--------AGRLDEAYDLIRTM-PLKPT-HAVW-----------------GALLGACVIHGNVELGEVAA 608 (667)
Q Consensus 556 ~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 608 (667)
+..++.++.. .|++++|+..|+++ ...|+ .... ..++..+...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888988 99999999999987 33343 2233 56678899999999999999
Q ss_pred HHhhccCCCCC---chHHHHHHHHhhc----------CCchHHHHHHHHhhhCC
Q 005966 609 KWLFELEPENP---GNYVLLSKLYSAV----------RRWKDAENVRDVMDEKG 649 (667)
Q Consensus 609 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 649 (667)
+++++..|+++ .++..++.+|... |++++|+..++++.+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999854 4888999999977 89999999999998765
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=8.8e-11 Score=99.19 Aligned_cols=125 Identities=10% Similarity=-0.063 Sum_probs=104.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGN 600 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 600 (667)
|...+...|++++|+..++.... ..+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44556778899999999998865 22223445667899999999999999999997 4555 77899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHH-HHHhhhCC
Q 005966 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV-RDVMDEKG 649 (667)
Q Consensus 601 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 649 (667)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887765 58887754
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.7e-09 Score=102.60 Aligned_cols=202 Identities=12% Similarity=0.066 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHh------CC-CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------
Q 005966 414 DATLNSLLPAYAILADLQQAMNIHCYLIRY------GF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK-------- 478 (667)
Q Consensus 414 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 478 (667)
..++..+...+...|++++|...++...+. +- +.....+..+...|...|++++|.+.+++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555666666666666666666665543 11 223456666777777777777777777665443
Q ss_pred CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---
Q 005966 479 DK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQS------GVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENH--- 547 (667)
Q Consensus 479 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 547 (667)
.| ...++..+...+...|++++|...+++..+. +-.|+ ..++..+...|...|++++|...++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 2456777888888888888888888888764 11232 3567888888999999999999999887631
Q ss_pred ---C-CCCchhHHHHHHHHHhhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 548 ---Q-TCSRADHYTCIVDLLGRAG------RLDEAYDLIRTMP-LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 548 ---~-~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
. .+.....+..+...+...+ .+.++...++... ..| ...++..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 1122334444444444333 3444555555553 223 34478888999999999999999999998753
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=8.9e-10 Score=96.09 Aligned_cols=160 Identities=9% Similarity=-0.037 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHH-
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL- 562 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~- 562 (667)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+... +...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHH
Confidence 44555666777777777777777766643 22455677777777778888888888877765322 33323222212
Q ss_pred HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC--CchHHHHHHHHhhcCCchHH
Q 005966 563 LGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRRWKDA 638 (667)
Q Consensus 563 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 638 (667)
+...+...+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.+|...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222333467777765 4455 57888999999999999999999999999999875 55899999999999999999
Q ss_pred HHHHHHhhh
Q 005966 639 ENVRDVMDE 647 (667)
Q Consensus 639 ~~~~~~~~~ 647 (667)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=6.8e-09 Score=93.45 Aligned_cols=173 Identities=9% Similarity=-0.049 Sum_probs=140.0
Q ss_pred HHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHh
Q 005966 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG----LLDEGLDLFNFM 543 (667)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~ 543 (667)
|.+.|++..+. .++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|..+|++.
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 34444444433 466777788888888899999999999998865 56677777777877 6 899999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 005966 544 LENHQTCSRADHYTCIVDLLGR----AGRLDEAYDLIRTMP-LKPT---HAVWGALLGACVI----HGNVELGEVAAKWL 611 (667)
Q Consensus 544 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 611 (667)
.+ . -+...+..|..+|.. .+++++|++.|++.- ..|. +..+..|...|.. .++.++|+..++++
T Consensus 80 ~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 77 2 245567788888887 889999999999874 4443 7888899999888 78999999999999
Q ss_pred hccCCCCCchHHHHHHHHhhc-C-----CchHHHHHHHHhhhCCC
Q 005966 612 FELEPENPGNYVLLSKLYSAV-R-----RWKDAENVRDVMDEKGL 650 (667)
Q Consensus 612 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 650 (667)
.+. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 67788999999999764 3 89999999999988774
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=5.5e-09 Score=86.21 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888888899999999999988764 335667788888888899999999999998873 334566788888899
Q ss_pred hhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 564 GRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 3 3336778888888999999999999999999988886
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=2.8e-09 Score=101.09 Aligned_cols=176 Identities=7% Similarity=-0.096 Sum_probs=140.6
Q ss_pred HHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
+.....+..... .+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++++..
T Consensus 103 ~~l~~~l~~~lp--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 103 EAIRALLDXVLP--REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHSC--CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHcC--CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344444544432 345567778888899999999999999999864 23566888899999999999999999999876
Q ss_pred hcCCCCchhHHH-HHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC--Cc
Q 005966 546 NHQTCSRADHYT-CIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PG 620 (667)
Q Consensus 546 ~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~ 620 (667)
.. |+..... .....+...++.++|+..+++. ...| +...+..+...+...|++++|+..++++++.+|++ +.
T Consensus 180 ~~---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 QD---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp GG---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred hh---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 32 4443322 2333466788888899888886 4445 67889999999999999999999999999999998 88
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
++..++.+|...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999988653
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=2.1e-09 Score=96.55 Aligned_cols=127 Identities=10% Similarity=0.051 Sum_probs=98.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (667)
.+..++.+.|++++|+..|++.++.. +-+...+..+..++...|++++|...|+++++. .|.+...+..++.+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 38888999999999999999999874 235678888999999999999999999999883 345677788888888665
Q ss_pred CC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 567 GR--LDEAYDLIRTMPLKPTH--AVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 567 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
|. .+.+...+++.. .|++ ..+.....++...|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 54 445566666653 3443 34555666777889999999999999999997
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=1.9e-09 Score=113.62 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 540 (667)
.|++++|.+.|++..+..|+ ...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999998887654 6788999999999999999999999999864 235678888999999999999999999
Q ss_pred HHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccC
Q 005966 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIH---GNVELGEVAAKWLFELE 615 (667)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 615 (667)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 3455778899999999999999999999987 4444 677888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 005966 616 PENPGNYVLLS 626 (667)
Q Consensus 616 p~~~~~~~~l~ 626 (667)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888777
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=6.5e-10 Score=93.17 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
+...+..+...+.+.|++++|+..|+++ ...| ++..|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3556777888888899999999998887 4455 6778889999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHhhhCC
Q 005966 630 SAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~ 649 (667)
...|++++|++.|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988765
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=1.9e-09 Score=96.86 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=120.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHhccCCHHHHHHHHHHhHHhcCC
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPN-EVTFTS----------------ALHACSHGGLLDEGLDLFNFMLENHQT 549 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (667)
.....+...|++++|+..|++..+. .|+ ...|.. +..++.+.|++++|+..|+++++. .
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 3445566778888888888877775 343 334555 888899999999999999999983 4
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHhhccCCCCCchHHHH
Q 005966 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGN--VELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
|.+...+..++.++...|++++|+..|+++ ...| +...+..+...+...|+ .+.+...++++....|. ...++.+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHH
Confidence 456788999999999999999999999997 4555 67788888888766554 55667777776654333 2356778
Q ss_pred HHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 626 SKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
+.++...|++++|+..|++..+..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999987654
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=4e-08 Score=92.48 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=112.0
Q ss_pred CHHHHHHHHhhCCCCCC-CcchHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH-
Q 005966 464 SLESAHKIFSEIPIKDK-DIVVWSVIIAGY----GMH---GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD- 534 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~- 534 (667)
++++++++++.+....| +..+|+.-...+ ... +++++++.+++++.+... -|..+|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccCh
Confidence 55555555555444333 334454433333 333 567777777777777542 25566666555566666666
Q ss_pred -HHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHH
Q 005966 535 -EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR------LDEAYDLIRTM-PLKP-THAVWGALLGACVIHGN-VELG 604 (667)
Q Consensus 535 -~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~A 604 (667)
++++.++++++ ..+.|...|+....++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+ .+..
T Consensus 163 ~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 77777777776 233455566666666666555 67777777665 3334 66677777777666665 4445
Q ss_pred HHHHHHhhccC---CCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 605 EVAAKWLFELE---PENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 605 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
..+.+++++++ |.++.++..++.+|.+.|+.++|++.++.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 56666666665 66677777777777777777777777777765
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=4.3e-09 Score=85.48 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=66.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACV 596 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 596 (667)
.+......|.+.|++++|+..|+++++ ..+.+...|..++.+|.+.|++++|++.+++. ...| +...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455555566666666666666666665 22334555666666666666666666666655 3333 4556666666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 628 (667)
..|++++|+..++++++++|+++.++..|+.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666667777777666666666666665554
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=7.7e-09 Score=99.31 Aligned_cols=220 Identities=12% Similarity=0.025 Sum_probs=145.4
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 005966 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI-LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (667)
.|++++|.+++++..+... .. +.. .++++.|...|... ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776554211 10 111 45666666665543 345666677777777
Q ss_pred HHhhCCCCC---CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCCHHHHHH
Q 005966 471 IFSEIPIKD---KD----IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV---QPN--EVTFTSALHACSHGGLLDEGLD 538 (667)
Q Consensus 471 ~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~g~~~~A~~ 538 (667)
.|.+..... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 666543321 11 34677788888888999999998888765311 122 2467778888888 99999999
Q ss_pred HHHHhHHhcCCCC----chhHHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 005966 539 LFNFMLENHQTCS----RADHYTCIVDLLGRAGRLDEAYDLIRTMP-L---KPT----HAVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 539 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 606 (667)
.|++..+...... ...++..+..+|.+.|++++|++.+++.- . .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998876321111 14567788999999999999999998861 1 122 2256666677778899999999
Q ss_pred HHHHhhccCCCCCch-----HHHHHHHHhhcCCchHHHH
Q 005966 607 AAKWLFELEPENPGN-----YVLLSKLYSAVRRWKDAEN 640 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 640 (667)
.+++++ +.|+.... ...++..+ ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 98876543 33455555 5677666655
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=3.5e-09 Score=86.05 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=91.1
Q ss_pred CCc-hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 550 CSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 550 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
.|+ ...+...+..|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 344 456788899999999999999999987 4455 7889999999999999999999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHhhhCCC
Q 005966 627 KLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
.+|...|++++|++.|++..+..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCc
Confidence 999999999999999999987653
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=1.4e-08 Score=92.47 Aligned_cols=187 Identities=14% Similarity=0.008 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcc----hHHH
Q 005966 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS--VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV----VWSV 487 (667)
Q Consensus 414 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 487 (667)
...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++....|+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777889999999999999998865322 235778889999999999999999999887666543 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 005966 488 IIAGYGM------------------HGHGETAVSLFKEMVQSGVQPNEV-TFTSALHACSHGGLLDEGLDLFNFMLENHQ 548 (667)
Q Consensus 488 l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 548 (667)
+..++.. .|++++|+..|+++++. .|+.. .+..... ...+.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999986 45542 2221111 001111111
Q ss_pred CCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCch
Q 005966 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621 (667)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 621 (667)
.....++..|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678889999999999999987 34443 2468888999999999999999999999999986554
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=1e-08 Score=92.54 Aligned_cols=128 Identities=10% Similarity=-0.091 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++.+. .+.+...+..++.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3445566677777788777777766 2456677777777777777788887777777762 234556677777777
Q ss_pred hhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 564 GRAGRLDEAYDLIRTM-PLKP-T----------------HAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
...|++++|++.++++ ...| + ...+..+..++...|++++|...++++++..|+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777765 2222 1 256667777777777777777777777777776
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.8e-08 Score=108.06 Aligned_cols=171 Identities=9% Similarity=-0.004 Sum_probs=99.6
Q ss_pred hCcCCHHHHHHHHHHHH--------HhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHc
Q 005966 425 AILADLQQAMNIHCYLI--------RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMH 495 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 495 (667)
...|++++|.+.++... +.. +.+...+..+...|.+.|++++|.+.|+++.+..| +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 221 33455566666666666666666666666555444 345666666666667
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 005966 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575 (667)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (667)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ ++.|+++.+ ..+.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766653 1234556666666666677776 666666665 2223455566666677777777777777
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 005966 576 IRTM-PLKPT-HAVWGALLGACVIHGN 600 (667)
Q Consensus 576 ~~~~-~~~p~-~~~~~~l~~~~~~~g~ 600 (667)
|+++ ...|+ ...+..+..++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7666 35554 3355555555544443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=5.3e-09 Score=100.43 Aligned_cols=196 Identities=10% Similarity=-0.017 Sum_probs=150.3
Q ss_pred CcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHH
Q 005966 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK-CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504 (667)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 504 (667)
..|++++|.+++++..+... .. +.+ .+++++|...|.. ....|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHH
Confidence 45778889998888765431 11 122 5788888887765 35678899999999999
Q ss_pred HHHHHHcCC---CCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-chhHHHHHHHHHhhcCChHHHHHH
Q 005966 505 FKEMVQSGV---QPN--EVTFTSALHACSHGGLLDEGLDLFNFMLENH---QTCS-RADHYTCIVDLLGRAGRLDEAYDL 575 (667)
Q Consensus 505 ~~~m~~~~~---~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 575 (667)
|.+..+... .+. ..+|..+...|...|++++|+..+++..+.. +.+. ...++..+..+|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 998876321 111 2478888899999999999999999887632 1111 24567888999988 999999999
Q ss_pred HHhC-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc------hHHHHHHHHhhcCCchHHHHH
Q 005966 576 IRTM-PLK---PT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG------NYVLLSKLYSAVRRWKDAENV 641 (667)
Q Consensus 576 ~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~ 641 (667)
+++. ... .+ ..++..+...+...|++++|+..+++++++.|++.. .+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9886 111 11 357888899999999999999999999998776543 667788889999999999999
Q ss_pred HHHhh
Q 005966 642 RDVMD 646 (667)
Q Consensus 642 ~~~~~ 646 (667)
+++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99987
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.3e-08 Score=107.37 Aligned_cols=149 Identities=10% Similarity=-0.070 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHH
Q 005966 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLF 505 (667)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (667)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+..| +...|..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777766543 34566777777777777888888877777766554 3566777777777778888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc---CChHHHHHHHHhC
Q 005966 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA---GRLDEAYDLIRTM 579 (667)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 579 (667)
++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7777753 224566777777777778888888777777762 233456677777777777 7777777777765
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=2.3e-09 Score=90.11 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 554 DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
..+..++..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33444455555555555555555544 2222 444555555555555555555555555555555555555555555555
Q ss_pred cCCchHHHHHHHHhhh
Q 005966 632 VRRWKDAENVRDVMDE 647 (667)
Q Consensus 632 ~g~~~~A~~~~~~~~~ 647 (667)
.|++++|++.|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=9.3e-08 Score=91.07 Aligned_cols=160 Identities=9% Similarity=-0.050 Sum_probs=121.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHH
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGV-QPNEV----TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYT 557 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 557 (667)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+.....++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887422 22221 2334666677788999999999998873222233 23688
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------CchH
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTMP-----LKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPEN------PGNY 622 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 622 (667)
.++.+|...|++++|+..++++- .+.+ ..++..++..|.+.|++++|+..+++++++.+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888762 1112 2367888999999999999999999999866443 4578
Q ss_pred HHHHHHHhhcCC-chHHHHHHHHhh
Q 005966 623 VLLSKLYSAVRR-WKDAENVRDVMD 646 (667)
Q Consensus 623 ~~l~~~~~~~g~-~~~A~~~~~~~~ 646 (667)
..+|.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 599999998875
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=6.3e-08 Score=91.76 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHH-HH
Q 005966 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII-AG 491 (667)
Q Consensus 413 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~-~~ 491 (667)
+...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...++++....|+........ ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455566667777888888888888877765 45667788888888888899999888888877666544333222 23
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH
Q 005966 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 492 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (667)
+...++.++|+..+++..+.. +.+...+..+...+...|++++|...+.++.+......+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 566677777888888888764 3355677778888888888888888888887743322335667777888888888777
Q ss_pred HHHHHHh
Q 005966 572 AYDLIRT 578 (667)
Q Consensus 572 A~~~~~~ 578 (667)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=1.3e-06 Score=89.09 Aligned_cols=370 Identities=11% Similarity=0.034 Sum_probs=216.3
Q ss_pred HcC-ChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCC-HHHH
Q 005966 189 KNA-YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS-VNEA 266 (667)
Q Consensus 189 ~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 266 (667)
+.| +++.|..+|+.+.. .-|. ++.+.+..+|+..+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~--~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR--LYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHH--HHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHH--HCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 37778888888766 2343 8899999999998885 3688888888887777663 3445
Q ss_pred HHHHhhcCC------CChhHHHHHHHHHH----hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhc---ccchHHHH
Q 005966 267 RLVFDRMSE------RDVVTWTSMINGYA----LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS---LYYLKRGR 333 (667)
Q Consensus 267 ~~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---~~~~~~a~ 333 (667)
..+|+.... .+...|...+.-+. .+++.+.+.++|++.... |.. .+..+-..|.. ......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHH
Confidence 556665432 35566777666543 235677888888888763 211 11222222211 11111222
Q ss_pred HHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC----CCCcccHHHHHHHHHhCC--C-----hHHHHHHH
Q 005966 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS----KKKTVPWNAILAGCVHNG--L-----ARKAVELF 402 (667)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~--~-----~~~A~~~~ 402 (667)
.+..... +.+..|..++.... ..+...|...+.--...+ - .+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 2221111 11222222222111 112223544444322221 0 34567788
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 005966 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK---- 478 (667)
Q Consensus 403 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 478 (667)
+++... .+-+...|...+.-+...|+.+.|..+++..... +.+...+...... .+.++. ...+.+.....
T Consensus 203 e~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 203 NYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC------
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccch
Confidence 887764 3444666666777777889999999999998887 4444333322211 111111 11222221100
Q ss_pred -----C-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhHHhcCCCC
Q 005966 479 -----D-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLDLFNFMLENHQTCS 551 (667)
Q Consensus 479 -----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 551 (667)
. .....|...+....+.++.+.|..+|++. +. ...+...|......- ...++.+.|..+|+...+..+ .
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~ 352 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--D 352 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--T
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--C
Confidence 0 11246777777777888999999999999 32 123444444322221 223469999999999998543 3
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34557778888889999999999999983 2567888888888889999999999998874
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=3.2e-09 Score=100.28 Aligned_cols=191 Identities=9% Similarity=-0.012 Sum_probs=123.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (667)
...+..+...+.+.|++++|...|++.....| +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34555566667777777777777776655444 45667777777788888888888888877653 22455677777778
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC---chhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCS---RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 604 (667)
...|++++|...|+++.+.....+ ....+..+ ...+...+.. .......++......+.. + ..|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888888888888887766321111 11111111 1112222221 222233344444443322 2 36899999
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHhhc-CCchHHHHHHHHhhhC
Q 005966 605 EVAAKWLFELEPENPGNYVLLSKLYSAV-RRWKDAENVRDVMDEK 648 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 648 (667)
.+.++++++++|++......+..++.+. +.+++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887888888777776 7789999999988764
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=3.1e-08 Score=85.14 Aligned_cols=126 Identities=8% Similarity=-0.014 Sum_probs=98.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACV 596 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 596 (667)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|++.+++. ...| +...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666777778888888888877762 3345667777888888888888888888776 3333 6678888888899
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHH--HHhhcCCchHHHHHHHHhh
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSK--LYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 646 (667)
..|++++|...++++++..|+++..+..++. .+...|++++|++.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999998888755444 4888899999999988764
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=4.7e-08 Score=85.02 Aligned_cols=157 Identities=10% Similarity=-0.039 Sum_probs=88.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhcc
Q 005966 453 TGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA-CSHG 530 (667)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~ 530 (667)
..+...+.+.|++++|...|++.....| +...+..+...+...|++++|+..+++..+.. |+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3444555666666666666666655443 34556666666666666666666666655532 233222211111 1111
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT---HAVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~ 606 (667)
+...+|...+++..+ ..|.+...+..+..++...|++++|...++++ ...|+ ...+..+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222345666666665 22234556666777777777777777777665 44443 3466666667777777777777
Q ss_pred HHHHhhc
Q 005966 607 AAKWLFE 613 (667)
Q Consensus 607 ~~~~~~~ 613 (667)
.+++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=9.7e-08 Score=86.07 Aligned_cols=152 Identities=11% Similarity=-0.005 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005966 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530 (667)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (667)
.+..+...+...|++++|...|++... |+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 355677888899999999999999875 788899999999999999999999999998864 34567888889999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCC--------------chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005966 531 GLLDEGLDLFNFMLENHQTCS--------------RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGAC 595 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 595 (667)
|++++|...|+++.+.....+ ....+..++.+|.+.|++++|.+.++++ ...|+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP---------- 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG----------
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc----------
Confidence 999999999999988322111 2267888999999999999999999987 566764
Q ss_pred HhcCCHHHHHHHHHHhhccCC
Q 005966 596 VIHGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p 616 (667)
..+..+.|...+++.....|
T Consensus 155 -~~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 155 -RHSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp -GGGHHHHHHHHHHTTCCCCC
T ss_pred -ccchHHHHHHHHHhcccccc
Confidence 33556666666665544443
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=4e-08 Score=80.74 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGAC 595 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 595 (667)
..+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|++.++++ ...| +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566666666677777777777777665 23335566666777777777777777777665 2233 566788888888
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCC
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 634 (667)
...|++++|+..++++++..|+++.++..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 889999999999999999999888888888888887664
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.1e-07 Score=90.49 Aligned_cols=162 Identities=9% Similarity=-0.075 Sum_probs=112.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC--Cc--hhH
Q 005966 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-----VTFTSALHACSHGGLLDEGLDLFNFMLENHQTC--SR--ADH 555 (667)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~~ 555 (667)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...++++.+..... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344556667777888888887777664322111 123335555677788888888888876522111 11 346
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC------CCc
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTMP----LKPT-----HAVWGALLGACVIHGNVELGEVAAKWLFELEPE------NPG 620 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 620 (667)
++.++..|...|++++|+..++++- ..|+ ..++..++..|...|++++|+..+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7788888888888888888887751 2222 147788888899999999999999998876532 145
Q ss_pred hHHHHHHHHhhcCCchHH-HHHHHHhh
Q 005966 621 NYVLLSKLYSAVRRWKDA-ENVRDVMD 646 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A-~~~~~~~~ 646 (667)
++..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 678899999999999999 77777754
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=4.4e-08 Score=80.16 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005966 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGA 594 (667)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 594 (667)
...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++. ...| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777788888888888887762 3345666777888888888888888888776 3333 56788888889
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCch
Q 005966 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636 (667)
Q Consensus 595 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 636 (667)
+...|++++|...++++++..|+++.++..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888763
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=1.4e-06 Score=81.92 Aligned_cols=231 Identities=9% Similarity=0.021 Sum_probs=174.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhCcC--CHHHHHHHHHHHHHhCCCCCchHHHHHHHHH----Hhc---
Q 005966 393 GLARKAVELFRQMLVEVVEPNDA-TLNSLLPAYAILA--DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY----SKC--- 462 (667)
Q Consensus 393 ~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 462 (667)
...++|++++.++... .|+.. .++.--..+...+ ++++++..++.+...+ +-+..+++.-..++ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 4446788888888764 45443 3455445555666 8888888888887765 34444554444444 444
Q ss_pred CCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------H
Q 005966 463 GSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGE--TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL------L 533 (667)
Q Consensus 463 g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~ 533 (667)
++++++.++++.+....| +..+|+--...+.+.|.++ ++++.++++.+.++. |...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 788999999998887664 6678888888888888888 999999999998643 77788777666777776 8
Q ss_pred HHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005966 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE-AYDLIRTMP-L----KPTHAVWGALLGACVIHGNVELGEVA 607 (667)
Q Consensus 534 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 607 (667)
+++++.++.++. ..+-|...|+-+...+.+.|+..+ +.++..+.- . ..++..+..++..+.+.|+.++|+++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999988 345678889999999988888555 455677652 2 34778899999999999999999999
Q ss_pred HHHhhc-cCCCCCchHHHHHHHH
Q 005966 608 AKWLFE-LEPENPGNYVLLSKLY 629 (667)
Q Consensus 608 ~~~~~~-~~p~~~~~~~~l~~~~ 629 (667)
++.+.+ .+|.....|...+..+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHhccChHHHHHHHHHHhhc
Confidence 999996 8999888887666543
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=1.1e-08 Score=89.16 Aligned_cols=128 Identities=9% Similarity=0.103 Sum_probs=87.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHH-HhhcCCh-
Q 005966 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL-LGRAGRL- 569 (667)
Q Consensus 492 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 569 (667)
+...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 445677777888888877754 3355677777777888888888888888877632 2345566667777 6677777
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 570 -DEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 570 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
++|...++++ ...| +...+..+...+...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888777776 3334 456677777777778888888888888888887765544
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=5.3e-08 Score=78.84 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 005966 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGA 594 (667)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 594 (667)
...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666777777778888888888777762 2345566777777888888888888887776 2 23366778888888
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 595 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
+...|++++|...++++++..|+++.++..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999888888888887654
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=1.6e-08 Score=84.36 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344444555555555555555554 2222 4445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHhhh
Q 005966 633 RRWKDAENVRDVMDE 647 (667)
Q Consensus 633 g~~~~A~~~~~~~~~ 647 (667)
|++++|.+.+++..+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.5e-08 Score=80.28 Aligned_cols=94 Identities=13% Similarity=0.007 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
.+..++..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4455555566666666666666554 2223 4555666666666666666666666666666666666666666666666
Q ss_pred CCchHHHHHHHHhhhC
Q 005966 633 RRWKDAENVRDVMDEK 648 (667)
Q Consensus 633 g~~~~A~~~~~~~~~~ 648 (667)
|++++|++.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 6666666666665543
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=3.9e-08 Score=95.46 Aligned_cols=128 Identities=13% Similarity=0.032 Sum_probs=96.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCS-------------RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP- 583 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 583 (667)
.+..+...+.+.|++++|...|+++++.....+ ....|..+..+|.+.|++++|+..++++ ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444445555555555555555544211110 1467888888999999999999998887 3444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHH-HHHHHHhh
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA-ENVRDVMD 646 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 646 (667)
+...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++| ...+++|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999 44566553
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=1.1e-08 Score=85.86 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=91.3
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 005966 505 FKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLK 582 (667)
Q Consensus 505 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 582 (667)
|+++.+. .|+ ...+..+...+...|++++|...|+.+.+ ..+.+...|..+..+|...|++++|+..|+++ ...
T Consensus 10 ~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444442 343 34566777788889999999999998887 33456777888899999999999999999887 344
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 583 P-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 583 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
| ++..+..+..++...|++++|+..+++++++.|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 4 6678888999999999999999999999999999877644
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=6.2e-08 Score=76.71 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CCchHHHHHH
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PL-KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSK 627 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 627 (667)
+...+..++..+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445666777788888888888888776 23 336677888888899999999999999999999999 9999999999
Q ss_pred HHhhc-CCchHHHHHHHHhhhCCC
Q 005966 628 LYSAV-RRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 628 ~~~~~-g~~~~A~~~~~~~~~~~~ 650 (667)
+|... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887764
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=6.2e-08 Score=88.83 Aligned_cols=195 Identities=11% Similarity=-0.001 Sum_probs=94.5
Q ss_pred CcCCHHHHHHHHHHHHHhCCCCCchHHHHH-------HHHHHhcCCHHHHHHHHhhCCCCCCCc----------------
Q 005966 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGL-------IDIYSKCGSLESAHKIFSEIPIKDKDI---------------- 482 (667)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------- 482 (667)
..++...|.+.|..+.+.. +-....+..+ ...+.+.++..++...+..-....|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666666666666654 2333444444 344444444444444444444422110
Q ss_pred ------chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc--hh
Q 005966 483 ------VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR--AD 554 (667)
Q Consensus 483 ------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 554 (667)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+ .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 012234445555566666666665555432 3333333344445555666666666554433 11 111 12
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTMP---LKPT--HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
.+..+..++.+.|++++|+..|++.. ..|. ...+.....++.+.|+.++|...|++++..+|+ +.+...|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 34445555556666666666655541 1122 224445555555556666666666666666555 44444443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=4.7e-08 Score=81.81 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGAC 595 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 595 (667)
..+..+...+.+.|++++|...|+++.+ ..|.+...|..++.+|...|++++|++.|+++ ...| ++..|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3566666677777888888888877776 23345667777788888888888888888776 3444 566778888888
Q ss_pred HhcCCHHHHHHHHHHhhccCCCC
Q 005966 596 VIHGNVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~ 618 (667)
...|++++|+..+++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888888888888888874
No 136
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=3.7e-05 Score=78.42 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=56.9
Q ss_pred hCC-CchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-HHH
Q 005966 87 QNG-ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE-VKA 164 (667)
Q Consensus 87 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 164 (667)
+.| +.+.|..+|+.+... -|. ++++.+..+|++.+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377777888877765 232 7788888888888774 4677788777777666553 233
Q ss_pred HHHHhcccC------CCChhhHHHHHHHHH----HcCChhHHHHHHHHHHH
Q 005966 165 ARKVFDAMW------EHSVVSWNTLISGYF----KNAYAKEALVVFDWMLK 205 (667)
Q Consensus 165 A~~~~~~~~------~~~~~~~~~li~~~~----~~~~~~~A~~~~~~m~~ 205 (667)
...+|+... ..+...|...+..+. .+++.+.+..+|++...
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 444444321 124455555555432 23455666666666665
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.71 E-value=3.8e-08 Score=79.20 Aligned_cols=95 Identities=13% Similarity=-0.027 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
.+..++..+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888999999999999887 4445 7778889999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhhCC
Q 005966 633 RRWKDAENVRDVMDEKG 649 (667)
Q Consensus 633 g~~~~A~~~~~~~~~~~ 649 (667)
|++++|+..+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987754
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=4.9e-08 Score=79.39 Aligned_cols=93 Identities=6% Similarity=-0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc-------hHHHH
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG-------NYVLL 625 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 625 (667)
.+..++..+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..+++++++.|+++. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3555666666666666666666665 3333 4556666666777777777777777777776666543 45556
Q ss_pred HHHHhhcCCchHHHHHHHHhhh
Q 005966 626 SKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
+.+|...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666777777777777776654
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=5.2e-07 Score=85.88 Aligned_cols=164 Identities=12% Similarity=-0.026 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 005966 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI-------VVWSVIIAGYGMHGHGETAVSLFKEMVQSGV---QPN--EV 518 (667)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 518 (667)
.+...+..+...|++++|.+.+.+.....+.. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34445667788888888888887554432221 2234455566778899999999998876321 111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCC--chhHHHHHHHHHhhcCChHHHHHHHHhC-CC------CC-CH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLEN---HQTCS--RADHYTCIVDLLGRAGRLDEAYDLIRTM-PL------KP-TH 585 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 585 (667)
+++.+...|...|++++|...++++.+. .+..+ ...++..++..|.+.|++++|++.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999999988732 22212 1247888889999999999999988876 11 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHhhcc
Q 005966 586 AVWGALLGACVIHGNVELG-EVAAKWLFEL 614 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 614 (667)
.++..++..+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778887753
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.9e-07 Score=85.58 Aligned_cols=122 Identities=11% Similarity=-0.071 Sum_probs=55.9
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 005966 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH----AVWGALLGACVIHG 599 (667)
Q Consensus 524 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~g 599 (667)
...+...|++++|.++|..+.. .- |+......+...+.+.|++++|+..|+.....|++ ..+..+..++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~--~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV--AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC--TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3334445555555555554433 11 22213333444455555555555555544322222 13444444455555
Q ss_pred CHHHHHHHHHHhhccC--CC-CCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 600 NVELGEVAAKWLFELE--PE-NPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
++++|+..++++.... |. .+.+.+.++.++.+.|+.++|...|+++...
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555554322 22 2234445555555555555555555555443
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=2e-06 Score=81.72 Aligned_cols=160 Identities=11% Similarity=-0.036 Sum_probs=121.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCC---Cc----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 005966 455 LIDIYSKCGSLESAHKIFSEIPIKDK---DI----VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PN----EVTFTS 522 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 522 (667)
.+..+...|++++|..++++.....+ +. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999998766432 21 12334666677778999999999999984322 23 236888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhc----CCCCc-hhHHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENH----QTCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM-------PLKPT-HAVWG 589 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 589 (667)
+...|...|++++|...++++.+.. ...+. ..++..++..|.+.|++++|++.+++. ...+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988421 22222 346788999999999999999998876 12222 56788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHhhcc
Q 005966 590 ALLGACVIHGN-VELGEVAAKWLFEL 614 (667)
Q Consensus 590 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 614 (667)
.++.++...|+ +++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999998764
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=8.7e-08 Score=82.17 Aligned_cols=110 Identities=13% Similarity=0.039 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLG 593 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 593 (667)
+...+..+...+...|++++|+..|++.++. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457888888899999999999999999883 3446778899999999999999999999987 4445 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHH
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 627 (667)
++...|++++|+..+++++++.|+++..+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887665553
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=1.6e-07 Score=77.64 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 554 DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
..+..++..+...|++++|+..+++. ...| +...+..+..++...|++++|+..+++++++.|+++.++..++.+|..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 33444444444444444444444443 1122 333444444444444555555555555555555544445555555555
Q ss_pred cCCchHHHHHHHHhh
Q 005966 632 VRRWKDAENVRDVMD 646 (667)
Q Consensus 632 ~g~~~~A~~~~~~~~ 646 (667)
.|++++|+..++++.
T Consensus 90 ~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 90 MESYDEAIANLQRAY 104 (137)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555544444
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=1.9e-07 Score=81.19 Aligned_cols=123 Identities=7% Similarity=0.030 Sum_probs=99.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGA-CVIHGNV-- 601 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~-- 601 (667)
+...|++++|...++...+. .+.+...+..++.+|...|++++|+..++++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999999988873 3456678888999999999999999999887 3334 66778888888 7788998
Q ss_pred HHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
++|+..++++++..|+++.++..++.+|...|++++|...++++.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999998877643
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.66 E-value=1.5e-06 Score=77.88 Aligned_cols=159 Identities=13% Similarity=0.017 Sum_probs=111.2
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhCCCCCchHHH
Q 005966 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA----DLQQAMNIHCYLIRYGFLSVVEVST 453 (667)
Q Consensus 378 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 453 (667)
++..+..+...|...+++++|+++|++..+.| +...+..+-..|.. + ++++|...++...+.+ ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44446666666777778888888888877654 44555566666666 5 7888888888776654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCCCCCC---cchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005966 454 GLIDIYSK----CGSLESAHKIFSEIPIKDKD---IVVWSVIIAGYGM----HGHGETAVSLFKEMVQSGVQPNEVTFTS 522 (667)
Q Consensus 454 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 522 (667)
.|..+|.. .+++++|.+.|++..+.+++ +..+..|...|.. .+++++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 77777766 77888888888887776653 6777777777777 77788888888888775 234445566
Q ss_pred HHHHHhcc-C-----CHHHHHHHHHHhHH
Q 005966 523 ALHACSHG-G-----LLDEGLDLFNFMLE 545 (667)
Q Consensus 523 ll~~~~~~-g-----~~~~A~~~~~~~~~ 545 (667)
|...|... | ++++|..+|+...+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 66666532 2 78888888888776
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=1.6e-07 Score=83.53 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 554 DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..+++++++.|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888999999999888887 3344 677888999999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHhhhCC
Q 005966 632 VRRWKDAE-NVRDVMDEKG 649 (667)
Q Consensus 632 ~g~~~~A~-~~~~~~~~~~ 649 (667)
.|+.+++. ..+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 99888888 5566665544
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=3.8e-07 Score=72.84 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACV 596 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 596 (667)
.+..+...+...|++++|...++.+.+. .+.+...+..++.++...|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555556666666666655552 2233444555555555666666666655554 2222 4555666666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 628 (667)
..|++++|...++++++..|+++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666665555544
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=1.1e-07 Score=79.32 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGAC 595 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 595 (667)
..+..+...+.+.|++++|...|+.+.+ ..+.+...|..+..+|.+.|++++|+..+++. ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455566677788888888888888877 23345667778888888888888888888876 3344 566788888889
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 628 (667)
...|++++|+..+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999887766544433
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.7e-07 Score=76.10 Aligned_cols=111 Identities=9% Similarity=-0.081 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGAC 595 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 595 (667)
..+..+...+.+.|++++|...|++.++. .+.+...|..++.++.+.|++++|+..+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35666667777888888888888887772 3345677888888888888888888888876 3444 567888888889
Q ss_pred HhcCCHHHHHHHHHHhhccC------CCCCchHHHHHHHHh
Q 005966 596 VIHGNVELGEVAAKWLFELE------PENPGNYVLLSKLYS 630 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 630 (667)
...|++++|+..+++++++. |+++.+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777777776666544
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=4.6e-07 Score=80.76 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CC----chHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 588 WGALLGACVIHGNVELGEVAAKWLFELEPE--NP----GNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 588 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
+..+...+...|++++|...++++++..+. ++ .++..++.+|...|++++|.+.+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444445555555555555555555543211 11 123455555666666666655555543
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=2.8e-07 Score=73.61 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=89.1
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
....+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556788899999999999999999987 3344 7788999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHhhhCCC
Q 005966 630 SAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~ 650 (667)
...|++++|.+.+++..+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887653
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=2.5e-07 Score=75.83 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=90.8
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHH
Q 005966 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627 (667)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 627 (667)
+.+...+..++..+.+.|++++|++.+++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345667888999999999999999999987 4555 77889999999999999999999999999999999999999999
Q ss_pred HHhhcCCchHHHHHHHHhhhCC
Q 005966 628 LYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+|...|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=1.8e-06 Score=81.96 Aligned_cols=181 Identities=17% Similarity=0.108 Sum_probs=88.0
Q ss_pred HHHHHHHHhhCCCCCC-CcchHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH-------
Q 005966 465 LESAHKIFSEIPIKDK-DIVVWSVIIAGYGMH-G-HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD------- 534 (667)
Q Consensus 465 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~------- 534 (667)
+++++++++.+....| +..+|+.-...+.+. + ++++++++++++.+... -|..+|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhH
Confidence 4444444444443332 233444444444333 3 44555555555554331 13334433333333333333
Q ss_pred -HHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCC-------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH---
Q 005966 535 -EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR-------LDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNV--- 601 (667)
Q Consensus 535 -~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--- 601 (667)
++++.++++++ ..+.|...|+....++.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 55555555555 222344455555555555444 45555555554 2333 555555555554444432
Q ss_pred -----------------HHHHHHHHHhhccC------CCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 602 -----------------ELGEVAAKWLFELE------PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 602 -----------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.........+.... +..+.++..|+.+|...|+.++|.+.++.+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222222 445667888999999999999999999988643
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.6e-07 Score=76.58 Aligned_cols=112 Identities=12% Similarity=-0.057 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWG 589 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 589 (667)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455666666677777777777777777651 233 455666666677777777777766665 2333 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
.+..++...|++++|...++++++..|+++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 66666677777777777777777777776666665555543
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=1.2e-07 Score=78.09 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc-------CCCCCchH----HHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFEL-------EPENPGNY----VLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.|..+..++.+.|++++|+..+++++++ +|+++.+| +..+.++...|++++|++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666666666 77766666 7777777777777777777766654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=5.8e-07 Score=76.96 Aligned_cols=94 Identities=7% Similarity=-0.046 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHH
Q 005966 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562 (667)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (667)
..|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++++. .+.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 345555555566666666666666655543 123445555555566666666666666665552 22334455555666
Q ss_pred HhhcCChHHHHHHHHhC
Q 005966 563 LGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 563 ~~~~g~~~~A~~~~~~~ 579 (667)
|...|++++|++.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 66666666666655554
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=4.3e-07 Score=73.37 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 553 ADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
...+..++..+...|++++|.+.++++ . .+.+..++..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 3 33467788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhCC
Q 005966 631 AVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~ 649 (667)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988765
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=3.7e-07 Score=74.45 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=89.0
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 005966 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 628 (667)
.+...+..++..+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567788889999999999999999987 3334 778889999999999999999999999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHhhhCC
Q 005966 629 YSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~ 649 (667)
|...|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999988765
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.5e-06 Score=72.76 Aligned_cols=99 Identities=12% Similarity=-0.016 Sum_probs=74.5
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
.+...+..++..+...|++++|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 45566777777777888888888877776 55665 45677777777778888888888888888888777777788
Q ss_pred HHHHhhcCCchHHHHHHHHhhhCC
Q 005966 626 SKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+.+|...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888888888888887776654
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=1.1e-06 Score=89.29 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 553 ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
...|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456888888999999999999999887 3444 67789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHhhh
Q 005966 631 AVRRWKDAEN-VRDVMDE 647 (667)
Q Consensus 631 ~~g~~~~A~~-~~~~~~~ 647 (667)
+.|++++|.+ .+++|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988875 4555543
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=2.6e-06 Score=72.91 Aligned_cols=128 Identities=12% Similarity=0.011 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHH
Q 005966 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562 (667)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (667)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777888888889988888888764 335677888888888889999999999888873 34456778888888
Q ss_pred HhhcCChHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHhhc
Q 005966 563 LGRAGRLDEAYDLIRTM-PLKP-THAVWGAL--LGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 563 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
+...|++++|.+.++++ ...| +...+..+ +..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88999999999988887 3333 44555333 3336778899999988887654
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=7.5e-07 Score=73.49 Aligned_cols=113 Identities=12% Similarity=-0.045 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005966 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALL 592 (667)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 592 (667)
.+...+..+...+...|++++|...|+...+. .+.+...+..++.++...|++++|+..+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566777777788888888888888887772 3345667778888888888888888888776 3334 567888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCC-----CCchHHHHHHHH
Q 005966 593 GACVIHGNVELGEVAAKWLFELEPE-----NPGNYVLLSKLY 629 (667)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 629 (667)
.++...|++++|+..+++++++.|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988887 444444444443
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=6.4e-05 Score=71.41 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=169.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-C-
Q 005966 388 GCVHNGLARKAVELFRQMLVEVVEPND-ATLNSLLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC-G- 463 (667)
Q Consensus 388 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 463 (667)
...+.+..++|+++++++... .|+. ..++.--..+...+ .+++++.+++.+.... +-+..+++.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334456667899999998875 4544 34454444555566 5899999999988766 45666677666666666 6
Q ss_pred CHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--
Q 005966 464 SLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGE--------TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL-- 532 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-- 532 (667)
+++++.++++.+.+..| +..+|+--...+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 88999999999988764 5677776666666655555 89999999999863 377888888888888776
Q ss_pred -----HHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C-----
Q 005966 533 -----LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL--------------------DEAYDLIRTMP-L----- 581 (667)
Q Consensus 533 -----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~----- 581 (667)
++++++.+++++. ..+-|...|+-+-..+.+.|+. .+..+...++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 7899999999887 3456777888877777776654 34444444442 2
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-ccCCCCCchHHHHHHH
Q 005966 582 --KPTHAVWGALLGACVIHGNVELGEVAAKWLF-ELEPENPGNYVLLSKL 628 (667)
Q Consensus 582 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 628 (667)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 3577889999999999999999999999986 6788766666655443
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=2.8e-07 Score=93.97 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=96.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005966 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNV 601 (667)
Q Consensus 524 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 601 (667)
...+.+.|++++|.+.++++.+. .+.+...|..++.+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788899999999888873 3345777888889999999999999998887 4455 677889999999999999
Q ss_pred HHHHHHHHHhhccCCCCCchHHHHHHH--HhhcCCchHHHHHHHH
Q 005966 602 ELGEVAAKWLFELEPENPGNYVLLSKL--YSAVRRWKDAENVRDV 644 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 644 (667)
++|+..+++++++.|+++.++..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8889999999999883
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=4e-07 Score=74.24 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=57.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 005966 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALLGAC 595 (667)
Q Consensus 522 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 595 (667)
.+...+...|++++|...|+.+.+.....+. ...+..++.++.+.|++++|+..++++ ...|+ ...+..+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445566667777777777666653221111 134555666666666666666666655 22232 34555566666
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
...|++++|+..++++++..|+++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 6666666666666666666666544433
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=5.7e-06 Score=78.27 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=103.5
Q ss_pred HHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 005966 465 LESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHG--HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL-LDEGLDLF 540 (667)
Q Consensus 465 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 540 (667)
++++..+++.+....| +..+|+--...+.+.+ .+++++.+++++.+... -|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555555444333 4455655555555555 36677777777776542 255556555555555565 46677777
Q ss_pred HHhHHhcCCCCchhHHHHHHHHHhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 005966 541 NFMLENHQTCSRADHYTCIVDLLGRA--------------GRLDEAYDLIRTM-PLKP-THAVWGALLGACVIH------ 598 (667)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 598 (667)
+.+++ ..+.|...|+.....+.+. +.++++++.+.+. ...| |...|+.+-..+...
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 76666 2334555565555444443 3466677666665 3334 566666555544443
Q ss_pred -----CCHHHHHHHHHHhhccCCCCCchHHHHHHHH---hhcCCchHHHHHHHHhhhCC
Q 005966 599 -----GNVELGEVAAKWLFELEPENPGNYVLLSKLY---SAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 599 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 649 (667)
+.++++++.+++++++.|++..++..++.+. ...|..++....++++.+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3467777777777777777644443333222 23566677777777776543
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=5.2e-07 Score=73.22 Aligned_cols=100 Identities=8% Similarity=-0.016 Sum_probs=55.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL----KPT----HAVWGA 590 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 590 (667)
+..+...+.+.|++++|+..|+++++. .|.+...|..++.+|.+.|++++|++.+++. .+ .++ ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344444555555555555555555541 2233444555555555555555555555543 11 111 124566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 591 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
++.++...|++++|++.++++++..|+ +...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 667777788888888888888877775 4433
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=4.7e-06 Score=86.43 Aligned_cols=171 Identities=11% Similarity=0.018 Sum_probs=140.3
Q ss_pred CHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-
Q 005966 464 SLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGH----------GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG- 531 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g- 531 (667)
..++|.+.++.+....|+ ..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 446778888877776664 4677776666666666 89999999999997533 6678888778888888
Q ss_pred -CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 005966 532 -LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG-RLDEAYDLIRTM-PLKP-THAVWGALLGACVIH--------- 598 (667)
Q Consensus 532 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 598 (667)
+++++++.++++.+ ..+.+...|+....++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 77999999999998 34467788988888888889 899999999988 5556 778898888876663
Q ss_pred -----CCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchH
Q 005966 599 -----GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637 (667)
Q Consensus 599 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 637 (667)
+.++++++.+++++..+|+|..+|..+.+++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998766
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.44 E-value=7.2e-07 Score=71.62 Aligned_cols=98 Identities=13% Similarity=0.013 Sum_probs=64.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVI 597 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 597 (667)
+..+...+.+.|++++|...++++.+ ..+.+...|..+..++...|++++|+..+++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445556667777777777777766 23345566677777777777777777777766 3444 56677777778888
Q ss_pred cCCHHHHHHHHHHhhccCCCCC
Q 005966 598 HGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888754
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=3.4e-06 Score=74.99 Aligned_cols=134 Identities=10% Similarity=-0.048 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCC--
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQS----GVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLEN---HQTCS-- 551 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~-- 551 (667)
..++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+++..+. .+..|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 345555555666666666666666655541 1111 1234555666666667777777666665542 22111
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMP----LKPTH----AVWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
....+..+...+...|++++|...+++.- ..++. .++..+...+...|++++|...+++++++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 23445566666777777777766666541 11122 234566666777777777777777776644
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.1e-06 Score=87.01 Aligned_cols=191 Identities=10% Similarity=-0.056 Sum_probs=132.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCCc------------------chHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH
Q 005966 457 DIYSKCGSLESAHKIFSEIPIKDKDI------------------VVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNE 517 (667)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 517 (667)
..+.+.|++++|.+.|..+.+..|+. .++..+...|...|++++|.+.+.++.+.- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34455666666666666554332210 136678888999999999999988876521 11222
Q ss_pred H----HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC----C---CC
Q 005966 518 V----TFTSALHACSHGGLLDEGLDLFNFMLEN---HQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM----P---LK 582 (667)
Q Consensus 518 ~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~ 582 (667)
. ..+.+...+...|++++|..+++..... .+..+ -..++..++..|...|++++|..++++. . .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 2333444456678999999998887642 12222 3457778999999999999999998876 1 22
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------CchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 583 P-THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-------PGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 583 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
| ...++..++..|...|++++|...+++++...+.. ...+..++.++...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 23467888889999999999999999988754332 13566788889999999999998877653
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=4.4e-07 Score=77.51 Aligned_cols=112 Identities=12% Similarity=0.010 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhc------C----------CCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENH------Q----------TCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P 580 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 580 (667)
..+......+.+.|++++|+..|.+.++.. . .+.+...|..+..+|.+.|++++|+..+++. .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 456677777888888888888888877620 0 1112345556666666666666666666665 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC-chHHHHHHHH
Q 005966 581 LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENP-GNYVLLSKLY 629 (667)
Q Consensus 581 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 629 (667)
..| +...|..++.++...|++++|+..++++++++|+++ .+...+..+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333 455666666666666666666666666666666655 3344444433
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=7.5e-07 Score=86.41 Aligned_cols=148 Identities=9% Similarity=-0.056 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
.+..+...+.+.|++++|+..|++.++. .|+... +...|+++++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555556666677777777777776664 343321 223334444332221 12678899999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh-hcCCchHHHH
Q 005966 564 GRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS-AVRRWKDAEN 640 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 640 (667)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..+++++++.|+++.++..|+.+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 4445 67789999999999999999999999999999999999999998844 5677888899
Q ss_pred HHHHhhhCCCc
Q 005966 641 VRDVMDEKGLR 651 (667)
Q Consensus 641 ~~~~~~~~~~~ 651 (667)
.+++|.+....
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 99998776543
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=1.5e-07 Score=83.68 Aligned_cols=120 Identities=8% Similarity=-0.067 Sum_probs=85.9
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-C----------------HHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-T----------------HAVWG 589 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 589 (667)
...|+++++.+.|+...+. .......+..++..+.+.|++++|++.|++. ...| + ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555555433221 1112334556667777777777777777765 2222 2 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.+..++...|++++|+..++++++..|+++.++..++.+|...|++++|++.+++..+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 889999999999999999999999999999999999999999999999999999988764
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=1.6e-07 Score=75.06 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHhHHhcC-CCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005966 530 GGLLDEGLDLFNFMLENHQ-TCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 606 (667)
.|++++|+..|+++++... .+.+...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666677777777665110 1223445666666666666666666666665 2333 45566666666666666666666
Q ss_pred HHHHhhccCCCCCchH
Q 005966 607 AAKWLFELEPENPGNY 622 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~~ 622 (667)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 6666666666655443
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=7.4e-07 Score=72.66 Aligned_cols=110 Identities=6% Similarity=-0.047 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC----CCC----HHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL----KPT----HAVWG 589 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 589 (667)
.+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|...++++ .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555556666666666655552 2234445555566666666666666665554 11 122 45667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
.++..+...|++++|...++++++..| ++.....+..++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777777888888888888888888777 46666666655544
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=2.7e-06 Score=66.97 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP---THAVWGALLG 593 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 593 (667)
..+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555566666677777777777776662 2334556666777777777777777777765 2333 4667777777
Q ss_pred HHHhc-CCHHHHHHHHHHhhccCCCCC
Q 005966 594 ACVIH-GNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 594 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.+... |++++|++.+++++...|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888888887754
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=7e-07 Score=72.82 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------CchHH
Q 005966 553 ADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-------PGNYV 623 (667)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 623 (667)
...+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999987 3 33477788999999999999999999999999998876 77899
Q ss_pred HHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 624 LLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.++.+|...|++++|.+.++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999988764
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=5.9e-07 Score=76.72 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PL------------------KP-THAVWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
+...+..+.+.|++++|+..|++. .. .| +...|..+..++.+.|++++|+..++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555666667777776666654 11 12 12356666666666777777777777777777
Q ss_pred CCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 616 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
|+++.++..++.+|...|++++|+..+++..+..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777776665543
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=1.8e-06 Score=81.26 Aligned_cols=114 Identities=11% Similarity=-0.085 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLG 593 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 593 (667)
+...+..+...+...|++++|...|+++.+. .+.+...|..++.+|.+.|++++|+..++++ ...| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888899999999999999999883 3346778888999999999999999999886 5555 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
++...|++++|+..+++++++.|+++..+...++...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 118 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 99999999999999999999999887666655555443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=3.2e-06 Score=68.74 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---CchHHHHHHHH
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTM-PLKPT-H---AVWGALLGACVIHGNVELGEVAAKWLFELEPEN---PGNYVLLSKLY 629 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 629 (667)
.++..+...|++++|.+.++++ ...|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4556666777777777777765 22232 2 356666666777777777777777777777776 55577777777
Q ss_pred hhcCCchHHHHHHHHhhhCC
Q 005966 630 SAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~ 649 (667)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777766543
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=1.5e-06 Score=85.23 Aligned_cols=90 Identities=14% Similarity=0.013 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
+...|..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..+++++++.|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999987 5556 6778999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHH
Q 005966 630 SAVRRWKDAENV 641 (667)
Q Consensus 630 ~~~g~~~~A~~~ 641 (667)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=1.1e-05 Score=76.21 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=143.0
Q ss_pred hcCCH-HHHHHHHhhCCCCCCCc-chHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005966 461 KCGSL-ESAHKIFSEIPIKDKDI-VVWSVIIAGYGMHGH----------GETAVSLFKEMVQSGVQPNEVTFTSALHACS 528 (667)
Q Consensus 461 ~~g~~-~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 528 (667)
+.|.+ ++|.++++.+....|+. .+|+.--..+...+. +++++.+++.+....+ -+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 34444 47888888888776653 556654444433333 6789999999998753 36677777766677
Q ss_pred ccC--CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCC-hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----
Q 005966 529 HGG--LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR-LDEAYDLIRTM-PLKP-THAVWGALLGACVIH----- 598 (667)
Q Consensus 529 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 598 (667)
+.| .+++++.+++.+.+ ..+.+...|+.-..++...|. ++++++.+.++ ...| |...|+.........
T Consensus 120 ~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 777 58999999999998 445677788888888888888 59999999887 4444 788898887776655
Q ss_pred ---------CCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc-----------CCchHHHHHHHHhhhCC
Q 005966 599 ---------GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV-----------RRWKDAENVRDVMDEKG 649 (667)
Q Consensus 599 ---------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 649 (667)
+.++++++.+++++..+|+|.++|..+..++... +.++++++.++++.+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4588999999999999999999999888787776 45789999999998764
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=2.2e-06 Score=72.94 Aligned_cols=129 Identities=11% Similarity=-0.010 Sum_probs=73.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hhHHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHH
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----ADHYTCIVDLLGRAGRLDEAYDLIRTMP----LKPT----HAV 587 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 587 (667)
+..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444331110011 1234445555555555555555555431 1111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC------CCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 588 WGALLGACVIHGNVELGEVAAKWLFELEPE------NPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 588 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+..+...+...|++++|...++++++..+. .+.++..++.+|...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566666777778888888888777765322 1346778888888899999999888887643
No 185
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=5.4e-06 Score=80.31 Aligned_cols=130 Identities=12% Similarity=-0.040 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN--------------EVTFTSALHACSHGGLLDEGLDLFNFMLENH 547 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 547 (667)
...|..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 45667777778888888888888888877532211 367888888888889999999999888873
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHhhc
Q 005966 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELG-EVAAKWLFE 613 (667)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 613 (667)
.+.+...|..+..+|...|++++|+..|+++ ...| +...+..+..++...|+.++| ...+++++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888899999999999888887 4445 566788888888888888888 446666553
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=2.6e-06 Score=70.25 Aligned_cols=107 Identities=16% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-----c-----hhHHHHHHHHHhhcCChHHHHHHHHhC-CC-------CCC
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCS-----R-----ADHYTCIVDLLGRAGRLDEAYDLIRTM-PL-------KPT 584 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~ 584 (667)
....+.+.|++++|+..|++.++.....| + ...|..+..++.+.|++++|+..+++. .. .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444455555555555555554221100 1 226677777777777777777776665 34 775
Q ss_pred H-HHH----HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 585 H-AVW----GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 585 ~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
. ..| .....++...|++++|+..|++++++.|+|..+...+..+-
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4 477 89999999999999999999999999999988877665443
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.1e-07 Score=72.56 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=80.4
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------CchH
Q 005966 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN------PGNY 622 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 622 (667)
++...+..++..+.+.|++++|++.+++. ...| +...+..+..++...|++++|+..+++++++.|++ +.++
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34566777888888899999999888886 3344 67788899999999999999999999999999998 7788
Q ss_pred HHHHHHHhhcCCchHHHHHHHHh
Q 005966 623 VLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
..++.++...|++++|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 89999999999998888777654
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=6.7e-07 Score=71.40 Aligned_cols=85 Identities=9% Similarity=-0.004 Sum_probs=62.9
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHH
Q 005966 565 RAGRLDEAYDLIRTM-PL---KP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 639 (667)
..|++++|+..|++. .. .| +...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357778888888776 34 24 34567777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhhCC
Q 005966 640 NVRDVMDEKG 649 (667)
Q Consensus 640 ~~~~~~~~~~ 649 (667)
+.+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888876653
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.21 E-value=4.4e-06 Score=64.23 Aligned_cols=65 Identities=26% Similarity=0.211 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888999999999999999999998889999999999999999999988887654
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=3.7e-06 Score=84.97 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=88.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--C---CCc-hhHHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQ--T---CSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM---------PLKPTH-AVWGA 590 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 590 (667)
+...|++++|+.++++.++... + .|+ ..+++.|+.+|...|++++|..++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654211 1 122 346777777788888888887777765 134433 36788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc-----cCCCCCchH---HHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 591 LLGACVIHGNVELGEVAAKWLFE-----LEPENPGNY---VLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 591 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
|+..|..+|++++|+.+++++++ ++|++|.+- ..|..++.+.|++++|...+.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998875 678877654 577888889999999999999988644
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.17 E-value=5.3e-06 Score=80.37 Aligned_cols=153 Identities=14% Similarity=0.037 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 528 (667)
...+..+...+.+.|++++|...|++.....|+... +...++..++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 356778888999999999999999987664444221 122333333332221 236788888999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 005966 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGA-CVIHGNVELGE 605 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~A~ 605 (667)
+.|++++|+..++++++. .+.+...|..+..+|...|++++|+..|+++ ...|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999883 3456778899999999999999999999998 56664 4455555555 33457788899
Q ss_pred HHHHHhhccCCCCCc
Q 005966 606 VAAKWLFELEPENPG 620 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~ 620 (667)
..++++++..|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998653
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=4.7e-06 Score=84.92 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=74.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChH
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (667)
.+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|+..++++.+ ..+.+...+..+..+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 3445667777777777766653 22355666666777777777777777777766 23344556666777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HhhccCCCC
Q 005966 571 EAYDLIRTM-PLKP-THAVWGALLGA--CVIHGNVELGEVAAK-----------WLFELEPEN 618 (667)
Q Consensus 571 ~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~ 618 (667)
+|++.++++ ...| +...+..+..+ +.+.|++++|+..++ ++++..|+.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 777777665 2233 23344444444 666677777777777 666666553
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=3.8e-06 Score=66.71 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 585 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444443
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.7e-05 Score=78.73 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=121.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNE----------------VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 552 (667)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+.+.....++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999999985422111 24777889999999999999999998774433333
Q ss_pred h----hHHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC-----
Q 005966 553 A----DHYTCIVDLLGRAGRLDEAYDLIRTM-------PLKPT-HAVWGALLGACVIHGNVELGEVAAKWLFELE----- 615 (667)
Q Consensus 553 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 615 (667)
. .+.+.+...+...|++++|.+++++. ...+. ..++..++..+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 3 23444555666789999999888775 23333 4577888999999999999999999887532
Q ss_pred -CCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 616 -PENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 616 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
|....++..++.+|...|++++|...+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999998764
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.14 E-value=8.1e-07 Score=73.05 Aligned_cols=49 Identities=6% Similarity=0.083 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC-----------CchHHHHHHHHhhhCC
Q 005966 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVR-----------RWKDAENVRDVMDEKG 649 (667)
Q Consensus 601 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~ 649 (667)
+++|+..|+++++++|+++.+|+.++.+|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 457777777777777777777777777777664 6777777777776654
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=9e-06 Score=68.99 Aligned_cols=134 Identities=12% Similarity=0.030 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc----hh
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PNE----VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR----AD 554 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 554 (667)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4566666777777777777777776653111 111 35667777788888888888888877653211111 34
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTMP----LKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+..+...+...|++++|.+.+++.- ..++ ...+..+...+...|++++|...+++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888877751 1112 335677788888999999999999998876443
No 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.09 E-value=1.3e-05 Score=60.15 Aligned_cols=73 Identities=12% Similarity=0.021 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCCC
Q 005966 582 KPTHAVWGALLGACVIHGN---VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655 (667)
Q Consensus 582 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 655 (667)
++++..+..+..++...++ .++|...++++++.+|+++.++..++..+.+.|++++|+.+|+++.+.... +|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3577788888888765444 799999999999999999999999999999999999999999999988765 443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=1.1e-05 Score=60.57 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 553 ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777777788888888777776 3333 56677888888888899999999999999999988888888888887
Q ss_pred hcC
Q 005966 631 AVR 633 (667)
Q Consensus 631 ~~g 633 (667)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=7.5e-06 Score=80.23 Aligned_cols=113 Identities=8% Similarity=0.026 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP-THAVWGALLGACV 596 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 596 (667)
..+..+...+.+.|++++|+..|+++++.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456667777777888888888887776611 000 0001111111 1223 4567888999999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+.|++++|+..++++++++|+++.++..++.+|...|++++|++.++++.+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988764
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=6.8e-06 Score=83.37 Aligned_cols=66 Identities=9% Similarity=-0.040 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 585 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
...|..+..++.+.|++++|+..++++++++|+++.+++.++.+|...|++++|+..|+++.+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467888999999999999999999999999999999999999999999999999999999988653
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=4.8e-05 Score=78.87 Aligned_cols=151 Identities=10% Similarity=0.029 Sum_probs=125.7
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCchhHHHHHHHHHh
Q 005966 496 GHGETAVSLFKEMVQSGVQPN-EVTFTSALHACSHGGL----------LDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564 (667)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (667)
...++|++.++++.+.+ |+ ...|+.--.++...|+ +++++..++.+.+ ..+.+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 34578899999999964 44 4557666666666666 9999999999998 44567778988888899
Q ss_pred hcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc-------
Q 005966 565 RAG--RLDEAYDLIRTM-PLKP-THAVWGALLGACVIHG-NVELGEVAAKWLFELEPENPGNYVLLSKLYSAV------- 632 (667)
Q Consensus 565 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 632 (667)
+.| +++++++.++++ ...| +...|+.-.....+.| .++++++.++++++.+|.|.++|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 4445 7889999999988989 899999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHhhhCCC
Q 005966 633 -------RRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 633 -------g~~~~A~~~~~~~~~~~~ 650 (667)
+.+++|++.++++.+..+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999998877553
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=4.7e-05 Score=62.48 Aligned_cols=111 Identities=9% Similarity=-0.061 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 005966 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI----HGNVELGEVA 607 (667)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 607 (667)
++++|.+.|++..+ .+. |... |...|...+..++|++.|++.-...++.....+...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 44555555555554 221 2221 445555555555555555555323455555666666655 5677777777
Q ss_pred HHHhhccCCCCCchHHHHHHHHhh----cCCchHHHHHHHHhhhCCC
Q 005966 608 AKWLFELEPENPGNYVLLSKLYSA----VRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 608 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 650 (667)
++++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777665 456677777777777 6777777777777766653
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.94 E-value=5e-06 Score=68.35 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCC----------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR----------LDEAYDLIRTM-PLKP-THAVWGALLGACVIH 598 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 598 (667)
+.+++|.+.++...+ ..+.+...|..+..++...++ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 345555555555554 222344445555555554443 34666666665 3444 445666666666655
Q ss_pred -----------CCHHHHHHHHHHhhccCCCCCch
Q 005966 599 -----------GNVELGEVAAKWLFELEPENPGN 621 (667)
Q Consensus 599 -----------g~~~~A~~~~~~~~~~~p~~~~~ 621 (667)
|++++|+..|+++++++|+++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 58999999999999999997533
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.5e-05 Score=61.27 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 583 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
++...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|++.+++..+...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34567888999999999999999999999999999999999999999999999999999999987654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=5.9e-05 Score=56.42 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345778888899999999999999999999999999999999999999999999999999988764
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.00046 Score=56.46 Aligned_cols=112 Identities=7% Similarity=-0.116 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh----cCChHH
Q 005966 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR----AGRLDE 571 (667)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 571 (667)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999987 44433 66777788889999999999987 3 355667788888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCC
Q 005966 572 AYDLIRTMPLKPTHAVWGALLGACVI----HGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 572 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 616 (667)
|++.|++.-...++.....|...|.. .+|.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998544678888889988888 8999999999999988753
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.65 E-value=0.00014 Score=57.32 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 535 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
+|+..++++.+ ..+.+...+..++..|...|++++|+..+++. ...| +...|..+..++...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555565555 23344556666777777777777777777665 2333 45677777777888888888888888888
Q ss_pred ccCCC
Q 005966 613 ELEPE 617 (667)
Q Consensus 613 ~~~p~ 617 (667)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77765
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.0003 Score=71.03 Aligned_cols=123 Identities=12% Similarity=-0.006 Sum_probs=84.0
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCC---CCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCCc-hhHHH
Q 005966 491 GYGMHGHGETAVSLFKEMVQS---GVQ---PNE-VTFTSALHACSHGGLLDEGLDLFNFMLENH-----QTCSR-ADHYT 557 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~---~~~---p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~-~~~~~ 557 (667)
.+...|++++|+.++++.++. -+- |+. .+++.|..+|...|++++|..+++++++.. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667778887777776652 112 222 467788888888888888888888776421 12233 45677
Q ss_pred HHHHHHhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTM---------PLKPTHA-VWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
.|+..|...|++++|..++++. +..|+.. +...+..++...+.+++|+..+.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889988888888776 1334333 345555667788889999999988865
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.54 E-value=0.00014 Score=70.08 Aligned_cols=423 Identities=11% Similarity=0.051 Sum_probs=255.7
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHH
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 131 (667)
..+...|++.+|+..|- ...|+..|..+|.+..+.|.+++-+..+...++. .-++..=+.++-+|++.+++.+-.
T Consensus 62 kAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 62 KAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELE 136 (624)
T ss_dssp HHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTT
T ss_pred HHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHH
Confidence 56666678888877663 3456677889999999999999999988877765 334455567888999988877655
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCC------------------------CChhhHHHHHHHH
Q 005966 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE------------------------HSVVSWNTLISGY 187 (667)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~ 187 (667)
+++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+|..+-.+|
T Consensus 137 efl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~AC 209 (624)
T 3lvg_A 137 EFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 209 (624)
T ss_dssp STTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHH
T ss_pred HHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 5431 46666667778888888888888888876621 3778999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHH
Q 005966 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267 (667)
Q Consensus 188 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 267 (667)
...+.+.-|.-+--.+.- .|| ....++..|-..|.+++-..+++..... -......++-|.-.|++- ++++..
T Consensus 210 vd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred hCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHH
Confidence 999999887766444432 222 3345677788999999999888887732 234677888888888876 555555
Q ss_pred HHHhhcCC----C-------ChhHHHHHHHHHHhCCChHHHHHHHHHHHhc--------------CCCCChhhHHHHHHH
Q 005966 268 LVFDRMSE----R-------DVVTWTSMINGYALNGDVRNALGLFQLMQFE--------------GVRPNSLTIGSLLSA 322 (667)
Q Consensus 268 ~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~p~~~t~~~ll~~ 322 (667)
+.++..-. | ....|.-++-.|.+-.+++.|... |.++ .-..+...|-..|.-
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~F 359 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 359 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHH
Confidence 55554332 2 344577777777777777765432 2111 012333344444443
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHH-HHHHHHHhCCChHHHHHH
Q 005966 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN-AILAGCVHNGLARKAVEL 401 (667)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~ 401 (667)
|....- .....++..+ ...+.+ +.+++.+.+.|++......+......|...-| ++-..|....+++.
T Consensus 360 YL~e~P-~lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~---- 428 (624)
T 3lvg_A 360 YLEFKP-LLLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA---- 428 (624)
T ss_dssp HTTSCC-TTSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH----
T ss_pred HHHhCh-HHHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH----
Confidence 332211 0001111110 001111 12344455556655555555555555544433 33344555555432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC
Q 005966 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481 (667)
Q Consensus 402 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 481 (667)
+..-+..|-+-....-|.++ .+ .+-...-..-...|.+.++++++.++.++=
T Consensus 429 ---------------LR~SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD------ 480 (624)
T 3lvg_A 429 ---------------LRTSIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCKKD------ 480 (624)
T ss_dssp ---------------HHHTTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT------
T ss_pred ---------------HHHHHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHHhc------
Confidence 22222222222233322222 11 122333444556788888898887765431
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 539 (667)
..|.-.|......|+.+-|.++++-.++.| +...|...+-.|...=++|-++++
T Consensus 481 -klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 481 -SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 122233444566788888888888888876 556788888888777777766654
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.52 E-value=0.00016 Score=55.09 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=64.0
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCc
Q 005966 559 IVDLLGRAGRLDEAYDLIRTM-PLKP-THA-VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 635 (667)
.+..+.+.|++++|++.++++ ...| +.. .+..+..++...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 566788899999999999887 3445 566 88888889999999999999999999999998877633 456
Q ss_pred hHHHHHHHHhhh
Q 005966 636 KDAENVRDVMDE 647 (667)
Q Consensus 636 ~~A~~~~~~~~~ 647 (667)
.++...+++..+
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 666666665443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=9.3e-05 Score=56.50 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCchh-HHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCH
Q 005966 525 HACSHGGLLDEGLDLFNFMLENHQTCSRAD-HYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTH-AVWGALLGACVIHGNV 601 (667)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~ 601 (667)
..+...|++++|...++++.+. .+.+.. .+..++.+|...|++++|++.|++. ...|+. ..+.. +.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3445556666666666655552 222334 4555555566666666666655554 233322 12111 344
Q ss_pred HHHHHHHHHhhccCCCC
Q 005966 602 ELGEVAAKWLFELEPEN 618 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~ 618 (667)
+++...++++....|++
T Consensus 78 ~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHhccCccc
Confidence 55555555555555543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.48 E-value=0.00021 Score=70.93 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc-----cCCCCCc---hHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFE-----LEPENPG---NYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
+++.++.+|..+|++++|+.+++++++ ++|++|. .+..|+.+|..+|++++|..++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344455555555555555555555443 3344333 34455555666666666666555543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0043 Score=58.85 Aligned_cols=135 Identities=18% Similarity=0.065 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHH--HcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc----cC-C---HHHHHHHHHHhHHh
Q 005966 481 DIVVWSVIIAGYG--MHG---HGETAVSLFKEMVQSGVQPNE-VTFTSALHACSH----GG-L---LDEGLDLFNFMLEN 546 (667)
Q Consensus 481 ~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~----~g-~---~~~A~~~~~~~~~~ 546 (667)
+...|...+.+.. ..+ +..+|+.+|++.++. .|+. ..+..+..+|.. .+ . .......+......
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5566666665532 223 347788888888885 4553 344444444330 00 0 00000111111110
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
...+.+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 111233334444444444445555555544444 22344444444444444445555555555555555544
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00053 Score=67.99 Aligned_cols=95 Identities=15% Similarity=-0.014 Sum_probs=66.6
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCC---Cc-hhHHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 005966 529 HGGLLDEGLDLFNFMLENH--QTC---SR-ADHYTCIVDLLGRAGRLDEAYDLIRTM---------PLKPTHA-VWGALL 592 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~ 592 (667)
..|++++|+.++++.++.. .+. |+ ..+++.|+.+|...|++++|+.+++++ +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777765521 111 22 356777888888888888888877765 1344433 688888
Q ss_pred HHHHhcCCHHHHHHHHHHhhc-----cCCCCCchHH
Q 005966 593 GACVIHGNVELGEVAAKWLFE-----LEPENPGNYV 623 (667)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 623 (667)
..|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999998876 5677765544
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.0013 Score=62.45 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhh---cC-C-------hHHHHHH
Q 005966 513 VQPNEVTFTSALHACS--HG---GLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGR---AG-R-------LDEAYDL 575 (667)
Q Consensus 513 ~~p~~~~~~~ll~~~~--~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 575 (667)
.+.+...|...+++.. .. ....+|..+|+++++. . |+ ...|..+..+|.- .+ . ...|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--D-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--S-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3556677777776643 22 3457899999999882 2 43 4445544433321 11 1 1123332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 576 IRTMP-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 576 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
...+. .+.++.++..+...+...|++++|+..++++++++|+ ...|..+++++.-.|++++|.+.+++....++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22333 3447778888887788889999999999999999976 66778999999999999999999999887654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.00059 Score=67.81 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc-----cCCCCCc---hHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFE-----LEPENPG---NYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
+++.++.+|...|++++|+.+++++++ +.|++|. .+..|+.+|..+|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444445555555555555554443 2333333 34445555555555555555555543
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.00096 Score=50.83 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=41.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
+...|..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666777777777777777766653 22345666666667777777777777766655
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.0012 Score=65.62 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=67.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhc--CCCC----chhHHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENH--QTCS----RADHYTCIVDLLGRAGRLDEAYDLIRTM---------PLKPTH-AVWG 589 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 589 (667)
.+.+.|++++|+.++++.++.. .+.| ...+++.++.+|...|++++|+.+++++ +..|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777766421 1122 2345667777777788888887777765 133433 3678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc-----cCCCCCchHHH
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFE-----LEPENPGNYVL 624 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 624 (667)
.|...|..+|++++|+..++++++ ++|++|.+...
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 888889999999999999998875 67887765543
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.14 E-value=0.00071 Score=54.91 Aligned_cols=91 Identities=13% Similarity=-0.065 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG---RLDEAYDLIRTM-PLK-P--THAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 603 (667)
+....+.+.|.+..+ .+ +++..+...+..++++.+ +.++++.++++. ... | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345666777776665 23 367777778888888887 666888888876 333 5 34567778888889999999
Q ss_pred HHHHHHHhhccCCCCCchHH
Q 005966 604 GEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~ 623 (667)
|.+.++++++.+|+|..+..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 99999999999998765554
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.14 E-value=0.0013 Score=59.53 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=66.9
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHhhccCCCC-CchHHHHHHHHhhc-CCchH
Q 005966 569 LDEAYDLIRTM-PLKPT---HAVWGALLGACVI-----HGNVELGEVAAKWLFELEPEN-PGNYVLLSKLYSAV-RRWKD 637 (667)
Q Consensus 569 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 637 (667)
..+|...+++. .+.|+ ...|..++..|.. -|+.++|++.|+++++++|+. ..+++.+++.|... |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555556554 46666 4466777766766 489999999999999999974 88999999988884 88999
Q ss_pred HHHHHHHhhhCCCccCCCe
Q 005966 638 AENVRDVMDEKGLRKAPAH 656 (667)
Q Consensus 638 A~~~~~~~~~~~~~~~~~~ 656 (667)
|.+++++.........|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999888777655653
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.12 E-value=5.4e-05 Score=72.89 Aligned_cols=240 Identities=14% Similarity=0.149 Sum_probs=163.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhc
Q 005966 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325 (667)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 325 (667)
.+.+|..|..+..+.+++.+|++.|-+. .|+..|..+|.+..+.|.+++-+..+...++..-.|. .=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 3556888888888888888877665433 4666788888888888999888888877766533343 33467888888
Q ss_pred ccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC------------------------CCCccc
Q 005966 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS------------------------KKKTVP 381 (667)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~ 381 (667)
.++..+.+.++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 777665443332 4566666677777778888887777776554 235667
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
|-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|-..|-+++-+.+++.-.... .....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999999999888876654443333 22221 2345566777888888888777665322 4467788888888887
Q ss_pred cCCHHHHHHHHhhCCCCC--C-------CcchHHHHHHHHHHcCChHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKD--K-------DIVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
- ++++..+.++....+- | ....|.-++-.|.+-.+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 4666666655443321 3 44578888888888888887653
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0033 Score=51.04 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhccC-C-CCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 582 KPTHAVWGALLGACVIHG---NVELGEVAAKWLFELE-P-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 582 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.++..+...+.+++++.+ +.++++.+++.+++.+ | ++..+++.|+-.|++.|++++|+++++++.+..
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 356677777777777766 5567777777777776 5 446677777777777777777777777776654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.77 E-value=0.0087 Score=44.48 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=53.7
Q ss_pred CCchhHHHHHHHHHhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 550 CSRADHYTCIVDLLGRAGR---LDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3566677777777754444 68888888887 4555 5667778888888999999999999999999888433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.73 E-value=0.0074 Score=46.18 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTMP---------LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
...++..+.+.|+++.|...++.+- ..+...++..+..++.+.|+++.|...+++++++.|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3345555555555555555554430 1234567888999999999999999999999999999877765554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.0068 Score=46.39 Aligned_cols=66 Identities=11% Similarity=-0.140 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC-------CCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELE-------PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+......++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556678889999999999999999998753 3345689999999999999999999999988754
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.092 Score=57.56 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=88.9
Q ss_pred HHHhCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHH
Q 005966 388 GCVHNGLARKAVE-LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466 (667)
Q Consensus 388 ~~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 466 (667)
.....+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+.- . .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ---------D---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------H---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc---------c---hheehhhhcCCHH
Confidence 3345677777766 4421 1 11222255666666777777777654211 1 1133456778999
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005966 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546 (667)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 546 (667)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 670 ~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~- 735 (814)
T 3mkq_A 670 LARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET- 735 (814)
T ss_dssp HHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-
Confidence 998887765 4567888999999999999999988887643 22333334445555554444444333
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
.+. ++.-..+|.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 121 223333455556666665555544
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.32 E-value=1.2 Score=46.21 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH
Q 005966 496 GHGETAVSLFKEMVQSGVQPNEVT----FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (667)
.+.+.|...+....+.. ..+... ...+.......+...++...+..... .. ++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RS-QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cC-CChHHHHHHHHHHHHCCCHHH
Confidence 37889999998887643 223322 22333334445535566666666544 12 333334444455567899999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 572 AYDLIRTMPLKP--THAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 572 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
|...|+.|...+ ...-..-+.++....|+.++|...++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996433 344445566677888999999999999875
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.30 E-value=0.27 Score=38.25 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=97.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH
Q 005966 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 492 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (667)
+.-.|..++..++..+..... +..-++-++--....-+-+-..++++.+-+. -| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHH
Confidence 455688888888888877642 3333444443333334444445555554331 12 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 572 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
....+-.+.. +...+...+.....+|..++-.+++..++...|-+|..+.-++.+|.+.|+..+|.+++.++=++|++
T Consensus 80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7777766642 34455667778889999999999999977777767999999999999999999999999999999976
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.2 Score=54.85 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHH
Q 005966 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437 (667)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 437 (667)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+....+-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445677777777766553 335588888888888888888888887653 333444444466666555554
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005966 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476 (667)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (667)
+.....|. ++.-..+|.+.|++++|.+++.++.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44444331 2333444566677777766665543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.71 Score=38.44 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005966 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538 (667)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 538 (667)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.+
T Consensus 15 AL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 34456666666655543 2345566666666666666666666665432 1222223334455544444
Q ss_pred HHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005966 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611 (667)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 611 (667)
+-+.... .+. ++.-...+.-.|+++++.+++.+.+.-|... ......|..+.|.++.+.+
T Consensus 82 la~iA~~-~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Ccc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4333333 121 3333444555666666666666665432211 1122356666666666554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.71 E-value=0.075 Score=41.36 Aligned_cols=90 Identities=16% Similarity=-0.033 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 005966 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE---AYDLIRTM-PLK-P--THAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 533 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 605 (667)
...+.+-|..... .+. ++..+-..+..++.+..+..+ ++.++++. ... | ....+..+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444544444 222 555555666777777666555 67777765 222 3 2335566777788899999999
Q ss_pred HHHHHhhccCCCCCchHHH
Q 005966 606 VAAKWLFELEPENPGNYVL 624 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~ 624 (667)
+.++.+++..|+|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999987766554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.68 E-value=0.019 Score=44.69 Aligned_cols=82 Identities=10% Similarity=-0.092 Sum_probs=64.5
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhccC-C-CCCchHHHHHHHHhhcCCchHHHHH
Q 005966 569 LDEAYDLIRTM--PLKPTHAVWGALLGACVIHGNVEL---GEVAAKWLFELE-P-ENPGNYVLLSKLYSAVRRWKDAENV 641 (667)
Q Consensus 569 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (667)
+..+.+-+.+. .-.|+..+-..+.+++.+..+... ++.+++.++..+ | .....++.|+-.+++.|+|++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433 134788888999999999886655 999999998877 5 4567899999999999999999999
Q ss_pred HHHhhhCCC
Q 005966 642 RDVMDEKGL 650 (667)
Q Consensus 642 ~~~~~~~~~ 650 (667)
++.+.+..+
T Consensus 97 ~~~lL~~eP 105 (126)
T 1nzn_A 97 VRGLLQTEP 105 (126)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 999987653
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.66 Score=38.64 Aligned_cols=129 Identities=10% Similarity=0.015 Sum_probs=91.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCCh
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (667)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 4456789999999988765 3677899999999999999999999998865 66677778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 570 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
+.-.++-+....+-+ ++.....+...|+++++.+++.+.-.. ..-.-....-|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHHHh
Confidence 776666554422222 344455567889999999998764332 11111222346677888887776
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.37 E-value=0.024 Score=51.48 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=33.4
Q ss_pred HHHHHHHHHhh-----cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCHHHHHHHHHHhhccCCC
Q 005966 555 HYTCIVDLLGR-----AGRLDEAYDLIRTM-PLKPT--HAVWGALLGACVI-HGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 555 ~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~ 617 (667)
.|..++..|.+ .|+.++|.+.|++. .+.|+ ..++......++. .|+.+.|.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44445555544 35555555555554 34442 3444444554444 36666666666666666555
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.082 Score=55.71 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 589 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
..-...|...|+++.|+.+.+++....|++-..|..|+.+|...|+|+.|+-.+..+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3334557788999999999999999999999999999999999999999999999884
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.92 E-value=5.2 Score=43.27 Aligned_cols=251 Identities=11% Similarity=0.025 Sum_probs=124.7
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CChh--HHHHHHHHHHhCCChHHHHHHHHHHHhcCC--CCC---h-hh-HHHHHHH
Q 005966 256 MYVKCGSVNEARLVFDRMSE----RDVV--TWTSMINGYALNGDVRNALGLFQLMQFEGV--RPN---S-LT-IGSLLSA 322 (667)
Q Consensus 256 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~---~-~t-~~~ll~~ 322 (667)
+....|+.++++.+++.... .+.. .=..+.-+.+..|...++.+++.......- .-+ . .. -..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567788888888877654 1222 122333445566666677777776654311 000 1 11 1111111
Q ss_pred --hhcccchHHHHHHHHHHHHhcCCCCc--hHHhHHHHHHHhcCCHHHHHHHHhccCCC-Cccc--HHHHHHHHHhCCCh
Q 005966 323 --CSSLYYLKRGRSLHAWTIKQNLECEV--IVETALIDMYAKCNLVKLSFQVFARTSKK-KTVP--WNAILAGCVHNGLA 395 (667)
Q Consensus 323 --~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--~~~li~~~~~~~~~ 395 (667)
+.-.++. ++...+..+....- ... ...-++...+.-.|+-+....++..+... +... .-.+.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222332 33333333332211 001 11123334455667766666666544321 1111 33344455567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHh
Q 005966 396 RKAVELFRQMLVEVVEPNDAT--LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473 (667)
Q Consensus 396 ~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (667)
+.+..+.+.+... ..|.... ...+.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887753 1222221 1234456778888877777888777542 2233333333334444666666667766
Q ss_pred hCCCCC-CCcchHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 005966 474 EIPIKD-KDIVVWSVIIAGYGMHGHG-ETAVSLFKEMVQ 510 (667)
Q Consensus 474 ~~~~~~-~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~ 510 (667)
.+...+ |.+..--++.-+....|+. .+++.++..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 554432 3333333333444444443 577888888865
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.82 E-value=0.23 Score=39.33 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=42.4
Q ss_pred CCchhHHHHHHHHHhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 550 CSRADHYTCIVDLLGRAGRLD---EAYDLIRTM-PLKP--THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
.|+..+-..+..++.+..+.+ +++.++++. ...| ....+..+.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 455555555666666655433 455555554 2223 2334455556667777777777777777777777544433
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.59 E-value=0.14 Score=40.96 Aligned_cols=105 Identities=13% Similarity=0.011 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhccCCH------HHHHHHHHHhHHhcCCCCchh-HHHHHHH------HHhhcCChHHHHHHHHhC--
Q 005966 515 PNEVTFTSALHACSHGGLL------DEGLDLFNFMLENHQTCSRAD-HYTCIVD------LLGRAGRLDEAYDLIRTM-- 579 (667)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~-- 579 (667)
-|..+|...+....+.|+. ++..++|+++.. .+||+.. .|...|. .+...++.++|.++|+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3567888888888878988 888899998887 5666532 2222222 123457888888888887
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 580 -PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 580 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
..+- ...|.....--.++|+...|.+++.+++.+.|.....+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 1222 55666666667789999999999999999988844333
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.25 E-value=0.087 Score=41.11 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=38.8
Q ss_pred CchhHHHHHHHHHhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 551 SRADHYTCIVDLLGRAGRL---DEAYDLIRTM-PLKP--THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
|+..+--.+..++.+..+. .+++.++++. ...| ....+..+.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4444444455555555443 3445555544 2223 2334555555666666666666666666666666554433
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.58 E-value=0.36 Score=38.55 Aligned_cols=97 Identities=10% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCcchHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHHHH---hccCCHHHHHHHHHHhHHh
Q 005966 480 KDIVVWSVIIAGYGMHGHG------ETAVSLFKEMVQSGVQPNEV----TFTSALHAC---SHGGLLDEGLDLFNFMLEN 546 (667)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~---~~~g~~~~A~~~~~~~~~~ 546 (667)
.|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|..+---| ...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677888888888888888 8888888888876 566542 233333222 2347888889999888774
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
...- ...|......-.++|++..|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 667777777778899999999988875
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.79 E-value=2.8 Score=32.78 Aligned_cols=138 Identities=10% Similarity=0.044 Sum_probs=86.8
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 005966 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (667)
-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+. -| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 356777777777776643 23344444444444444444444444433221 11 234566666666
Q ss_pred HHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 005966 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (667)
.+-.+- .+.......+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+ .|.
T Consensus 83 C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~ 156 (172)
T 1wy6_A 83 CGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 156 (172)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhh
Confidence 665543 35566677778888888888888888886543 477888888888888888888888888888876 454
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.66 E-value=0.42 Score=39.08 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
.-+.++.+|.+.|++++|+.+++.+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4444555555555555555555443
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.25 E-value=7.1 Score=36.14 Aligned_cols=168 Identities=10% Similarity=0.103 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHH----HHHHHhcCCCCChhhHHHHHHHh
Q 005966 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL----FQLMQFEGVRPNSLTIGSLLSAC 323 (667)
Q Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~ 323 (667)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566777778889999999988644 23456677887766665 44455678889988888888776
Q ss_pred hcccchH-HHHHHHHHH----HHhc--CCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhC---C
Q 005966 324 SSLYYLK-RGRSLHAWT----IKQN--LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN---G 393 (667)
Q Consensus 324 ~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~ 393 (667)
......+ .-.++...+ .+.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533211 123333333 3333 2346778888899999999999988877633322344444443333333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 005966 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441 (667)
Q Consensus 394 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 441 (667)
...++-- ..-..++ .|...++...|..+++...
T Consensus 183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 3333211 1112222 3445677777777777654
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.62 E-value=3.2 Score=32.89 Aligned_cols=71 Identities=10% Similarity=-0.054 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCC-CCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 580 PLKPTHAVWGALLGACVIHGN---VELGEVAAKWLFELEPE-NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 580 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
...|+..+-..+.+++.++.+ ..+++.+++.++...|+ ....++.|+-.+++.|+|++|+++.+.+.+..+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 335788888888888887764 56788888888888774 456788889999999999999999998887653
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.62 E-value=1.3 Score=36.29 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=34.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSG-VQPNE-------VTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|+++++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33455566666776666666544311 12221 2455566777777777777777777654
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.42 E-value=12 Score=37.04 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCc--hh
Q 005966 485 WSVIIAGYGMHGHGETAVSLFKEMVQS--GVQPNE---VTFTSALHACSHGGLLDEGLDLFNFMLEN---HQTCSR--AD 554 (667)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~--~~ 554 (667)
...|...+...|++.+|..++..+... |..+.. ..+...++.|...+++.+|..+++++... ...+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998753 222221 34666778899999999999999987531 122232 24
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
.+...+..+...++|.+|-+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5677888889999999998887765
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.24 E-value=4.3 Score=40.24 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=115.1
Q ss_pred CCHHHHHHHHhhCCCC---C----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccC
Q 005966 463 GSLESAHKIFSEIPIK---D----KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC----SHGG 531 (667)
Q Consensus 463 g~~~~A~~~~~~~~~~---~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g 531 (667)
|+++.|.+.+-.+.+. . ........++..|...|+++...+.+.-+....-... .....+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCC
Confidence 6788888876443321 1 2345677888999999999999888876665322221 2222333322 2223
Q ss_pred CHHH--HHHHHHHhHHh--cCCCC---chhHHHHHHHHHhhcCChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHH
Q 005966 532 LLDE--GLDLFNFMLEN--HQTCS---RADHYTCIVDLLGRAGRLDEAYDLIRTMP-----LKPT---HAVWGALLGACV 596 (667)
Q Consensus 532 ~~~~--A~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~~~ 596 (667)
..+. -..+.+..... ...-. .......|...+...|++.+|.+++..+. ..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2222 22222222110 11111 22234568899999999999999999872 2221 235667778899
Q ss_pred hcCCHHHHHHHHHHhhc---cCCCCC----chHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 597 IHGNVELGEVAAKWLFE---LEPENP----GNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
..+|+..|..+++++.. ..+.++ ..+...+.++...++|.+|-..|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999998742 222222 3667889999999999999988877643
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.17 E-value=9.7 Score=35.53 Aligned_cols=167 Identities=12% Similarity=0.088 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHH----HHHHhcCCCCChhhHHHHHHHhh
Q 005966 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF----QLMQFEGVRPNSLTIGSLLSACS 324 (667)
Q Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 324 (667)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...+-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 566677778899999999988644 234566777776665554 55556788999988888888776
Q ss_pred cccchH-HHHHH----HHHHHHhc--CCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHH
Q 005966 325 SLYYLK-RGRSL----HAWTIKQN--LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397 (667)
Q Consensus 325 ~~~~~~-~a~~~----~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 397 (667)
.....+ .-..+ ..+-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++++..+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 654321 11222 33333333 345677888888889999999998888753222222344444433333332221
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 005966 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441 (667)
Q Consensus 398 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 441 (667)
+ +.+.-..++ .|...++...|...++...
T Consensus 186 ~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 A--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1 222222222 3455667777777665544
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.56 E-value=1.8 Score=33.87 Aligned_cols=70 Identities=10% Similarity=-0.044 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCC-CCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 580 PLKPTHAVWGALLGACVIHGN---VELGEVAAKWLFELEPE-NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 580 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+-.|++.+-..+.+++.++.+ ..+++.+++.+++.+|. ....++.|+-.+.+.|++++|+++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 345677777777777777654 45677888888877774 35677788888888888888888888877654
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.45 E-value=1 Score=47.52 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=33.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (667)
|...|+++-|+.+-++... -.|.+-.+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455666666666666655 333445666666667777777777766666665
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.35 E-value=12 Score=35.02 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=94.8
Q ss_pred HHHHHHHHhhccCCh---hhHhHHHHHHHHhCCCchhhhhhHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCc
Q 005966 15 LVIKLVQQYAATKSI---AGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91 (667)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 91 (667)
-...-++.....|++ =+|.|.+..+. .=|.+++++++|+.++-. -...+.+.|+.
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~-----------~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~ 71 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVA-----------ARYSKQGNWAAAVDILAS-----------VSQTLLRSGQG 71 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHH-----------HHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCc
Confidence 344456777788888 66766665544 347778999999987642 34456666776
Q ss_pred hHHHHHH----HHhHHcCCCCCCcccHHHHHHHhccccc-----hHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcC
Q 005966 92 HDSLKMF----LGMLRLGEYNPDNYTYPIVIKACTDLAW-----RKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFG 160 (667)
Q Consensus 92 ~~a~~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 160 (667)
..|-++- +-+.+. ++++|......++..+..... ..-......+-.+.| ..-|+..+..+...|.+.+
T Consensus 72 ~sg~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~ 150 (336)
T 3lpz_A 72 GSGGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG 150 (336)
T ss_dssp HHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC
Confidence 6555544 333444 677887777777777654432 111222333333444 3456778888888999999
Q ss_pred CHHHHHHHhcccCCCChhhHHHHHHHHHHcCC
Q 005966 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192 (667)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 192 (667)
++.+|+.-|-.-..+++..+..++..+...+.
T Consensus 151 ~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 151 EFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 99999888743222233566555544444433
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.18 E-value=0.55 Score=45.76 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh-----hCCCccCC
Q 005966 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD-----EKGLRKAP 654 (667)
Q Consensus 588 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 654 (667)
...++.++...|+.+++...+..++..+|-+...+..|..+|.+.|+..+|++.|+++. +.|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556667778888888888888888888878888888888888888888888877764 34555443
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.70 E-value=5.5 Score=29.00 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=64.3
Q ss_pred ccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 005966 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203 (667)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 203 (667)
....++|..+-+.+...+- ...+--.-++.+.+.|++++|..+.+...-||..+|-.|-. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467888888888877763 44444444566889999999999999999999999987765 4678888888877777
Q ss_pred HHCCCCCChHHH
Q 005966 204 LKSGVEPDCASV 215 (667)
Q Consensus 204 ~~~g~~p~~~~~ 215 (667)
...| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7655 3443333
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.43 E-value=31 Score=37.40 Aligned_cols=216 Identities=13% Similarity=0.032 Sum_probs=92.7
Q ss_pred HHHhcCCHHHHHHHHhccCCCC--ccc----HHHHHHHHHhCCChHHHHHHHHHHHHCCC-------CCCHHHHHHH--H
Q 005966 357 MYAKCNLVKLSFQVFARTSKKK--TVP----WNAILAGCVHNGLARKAVELFRQMLVEVV-------EPNDATLNSL--L 421 (667)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~l--l 421 (667)
+....|+.++++.+++.....+ ... =..+.-+....|..+++..++.......- .+....-..+ -
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4555667777777776655421 111 12223344455555566666665443211 0111111222 2
Q ss_pred HHHhCcCCHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCCh
Q 005966 422 PAYAILADLQQAMNIHCYLIRYGFLSVV--EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHG 498 (667)
Q Consensus 422 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 498 (667)
.++...++- ++...+..+....- +.. ..-.+|...+.-.|+.+....++..+.+...+ ..-.-++.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 222333332 33333333333211 111 11122333344556666666665544332111 11122222334456666
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHH
Q 005966 499 ETAVSLFKEMVQSGVQPNEV-TFT---SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574 (667)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (667)
+.+..+.+.+... .++. -|. .+.-+|+-.|+.....+++..+.++ ...++.-...+.-++...|+.+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 6666666666653 2222 222 2333456666766666677666651 11222222222233334455554555
Q ss_pred HHHhC
Q 005966 575 LIRTM 579 (667)
Q Consensus 575 ~~~~~ 579 (667)
+++.+
T Consensus 616 lv~~L 620 (963)
T 4ady_A 616 IVQLL 620 (963)
T ss_dssp HTTTG
T ss_pred HHHHH
Confidence 55544
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.32 E-value=5.9 Score=28.89 Aligned_cols=87 Identities=11% Similarity=0.157 Sum_probs=63.3
Q ss_pred ccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 005966 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203 (667)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 203 (667)
....++|..+-+.+...+- ...+--.-++.+.+.|++++|..+.+...-||..+|-.|-. .+.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467888888888877763 44444444566889999999999999999999999988765 4667777777777777
Q ss_pred HHCCCCCChHHH
Q 005966 204 LKSGVEPDCASV 215 (667)
Q Consensus 204 ~~~g~~p~~~~~ 215 (667)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6654 3433333
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.21 E-value=2.7 Score=30.83 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=42.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 572 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
++.-+-.+-.-|++.++.+.+++|++.+|+..|.++++-+...-.+...+|..+.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3333444468899999999999999999999999999988766555455565544
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.57 E-value=17 Score=35.03 Aligned_cols=26 Identities=4% Similarity=-0.095 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHH
Q 005966 415 ATLNSLLPAYAILADLQQAMNIHCYL 440 (667)
Q Consensus 415 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 440 (667)
.....+...|...|+.++..+++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.34 E-value=6.9 Score=35.02 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchh----HHHHHHHHHhhc
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD----HYTCIVDLLGRA 566 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 566 (667)
...+.|+.+++++....-++.. +-|...-..++..+|-.|+|++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556778888888777777764 335566667777788888888888877777652 23332 23333322
Q ss_pred CChHHHHH-HHHhC--C--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 567 GRLDEAYD-LIRTM--P--LKPTHAVWGALLGA--CVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 567 g~~~~A~~-~~~~~--~--~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
+...+ +|..- + ......-...++.+ ....|+.+.|.+.-.++++.-|..+...
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 11111 22211 1 11122233444444 3456888888888888888887755533
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.63 E-value=0.97 Score=40.39 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 562 LLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+.+.|++++|++.+..- +..| |...-..++..++-.|++++|..-++.+.+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345666777776655443 4444 5555666666666777777777777777777666
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.57 E-value=3.3 Score=30.38 Aligned_cols=62 Identities=11% Similarity=0.217 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
.-+..+-+..+....+.|++......+.+|.+.+++.-|.++++.++.+.+.. ..+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 33455666666667778888888888888888888888888888887744433 345655543
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.80 E-value=3.6 Score=39.97 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHH-----hCCCCchHHHH
Q 005966 80 TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI-----TGFDMDTFVGN 150 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 150 (667)
.++..+...|++++++..+..+... .+.+...+..++.++.+.|+..+|...|+...+ .|+.|+..+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455666777888887777777765 455667777777888788888888777777543 47777766544
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.34 E-value=11 Score=42.80 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 005966 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405 (667)
Q Consensus 350 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 405 (667)
....++..+.+.+..+.+.++..-.. .++..--.+..++...|++++|.+.|.+.
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33455666667777777776655443 33333345667777888888888888764
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.89 E-value=27 Score=32.30 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=91.2
Q ss_pred HHHHHHhhccCChhhHhHHHHHHHHhCCCchhhhhhHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHH
Q 005966 17 IKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLK 96 (667)
Q Consensus 17 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 96 (667)
..-++.....|++=+|.|.+..+. .=|.+++++++|+.++.. -...+.+.|++..|-+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~-----------~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~D 74 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA-----------NRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTD 74 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHH-----------HHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHH
Confidence 334555666677777777666544 346677889999887643 3445566677666555
Q ss_pred H----HHHhHHcCCCCCCcccHHHHHHHhcccc-----chHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCHHHH
Q 005966 97 M----FLGMLRLGEYNPDNYTYPIVIKACTDLA-----WRKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAA 165 (667)
Q Consensus 97 ~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 165 (667)
+ .+...+. +.+++......++..+.... +..-......+-.+.| ..-++..+..+...|.+.|++.+|
T Consensus 75 La~llvev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 75 LIFYLLEVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 4 3333344 67777777777776665422 1222333333444443 224778888899999999999999
Q ss_pred HHHhcccCCCChhhHHHHHHHHHHc
Q 005966 166 RKVFDAMWEHSVVSWNTLISGYFKN 190 (667)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~~~~ 190 (667)
+.-|-.-...+...+-.++..+...
T Consensus 154 ~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 154 ERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHh
Confidence 8877532222455555555544444
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.03 E-value=11 Score=27.38 Aligned_cols=78 Identities=13% Similarity=-0.077 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
..++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|-++-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555443 23333333456778999999999999999999999987765 478888888888878876
Q ss_pred cC
Q 005966 307 EG 308 (667)
Q Consensus 307 ~~ 308 (667)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.61 E-value=12 Score=27.32 Aligned_cols=78 Identities=12% Similarity=-0.020 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
..++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|-++-.. +.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 44555555555555443 222333334567788999999999999999999998877654 66777777777777766
Q ss_pred cC
Q 005966 307 EG 308 (667)
Q Consensus 307 ~~ 308 (667)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.25 E-value=6.1 Score=44.82 Aligned_cols=64 Identities=9% Similarity=-0.145 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc-----hHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPG-----NYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
-|..++..+.+.|.++.+.++.+.+++..+.+.. .|..+.+.+...|++++|...+-.+.+...
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 4555666666677777777777777664433222 355566666677777777777766655443
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.85 E-value=7 Score=38.53 Aligned_cols=60 Identities=12% Similarity=-0.043 Sum_probs=26.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENH-QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
...+..-|.+.|+++.|.+.+.++.... +..--...+..++..+...+++..+...++++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444555555555555555554421 11111233444444444455555554444443
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.77 E-value=7.7 Score=30.21 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 570 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
.+++.-+-.+.+-|++.++...+++|++.+|+..|.++++-+...-.+...+|..+.
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334444445568899999999999999999999999999988766554455566544
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.24 E-value=7.2 Score=30.38 Aligned_cols=60 Identities=12% Similarity=0.256 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
+..+-++.+...++.|++......+.+|.+.+++.-|.++|+-++.+.+. ...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 34555566666777888888888888888888888888888888774443 3445665543
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=78.66 E-value=62 Score=33.64 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=40.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHh--
Q 005966 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF-LSVVEVSTGLIDIYSK-- 461 (667)
Q Consensus 385 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 461 (667)
....+.-.|+++.|++.+-+. ...+.+.+...+..+.-.+- . +.+..... .| ..-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcc-cccHHHHHHHHHHHh
Confidence 445556678899998877654 34555666555554433332 1 11111100 11 2225556666654
Q ss_pred -cCCHHHHHHHHhhC
Q 005966 462 -CGSLESAHKIFSEI 475 (667)
Q Consensus 462 -~g~~~~A~~~~~~~ 475 (667)
..+..+|.+.|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 57778888877665
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.83 E-value=55 Score=31.49 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=19.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhccC
Q 005966 350 VETALIDMYAKCNLVKLSFQVFARTS 375 (667)
Q Consensus 350 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 375 (667)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667778888888888877777654
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.31 E-value=23 Score=30.03 Aligned_cols=28 Identities=7% Similarity=-0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFEL 614 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 614 (667)
.|......+...|++++|..+++..++.
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444444444555555555555555443
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.37 E-value=43 Score=32.81 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 005966 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKD----KDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509 (667)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 509 (667)
....+.+.|.+.|+++.|.+.|.++.... .-...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455566666666666666665543321 112344455555555666666666555544
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.83 E-value=91 Score=29.44 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHhccCCCCccc---HHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHH
Q 005966 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVP---WNAILAGCVHNGL--ARKAVELFRQMLVEVVEPNDATL 417 (667)
Q Consensus 352 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~ 417 (667)
..++.-|...|+.++|...++++..+.-.. ...+..++-+.++ .+...+++..+...|+-+.....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 456677777788888888888777553221 3333344443322 34566777777766655544433
No 275
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=62.99 E-value=42 Score=28.17 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=42.7
Q ss_pred hHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHH
Q 005966 569 LDEAYDLIRTMPLKPTHA--VW-----GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 569 ~~~A~~~~~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 639 (667)
++.|+.+++.++..-|.. .. -..+..|.+.|.+++|.+++++..+..|.+...-.-|..+-.+...+..-+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 667888888875332321 11 233456899999999999999998888776666666666555555444433
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.89 E-value=48 Score=26.68 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=27.9
Q ss_pred HHHHHHHhhccC--CCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 604 GEVAAKWLFELE--PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 604 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+..+|+.+...+ -.-+..|...+..+...|++++|.++++.-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 556666555433 3344556666666777777777777776655544
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.73 E-value=71 Score=27.12 Aligned_cols=61 Identities=8% Similarity=0.004 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
++..+....+.++.+.|..+....+.+.+.+++...-...+.++.+.+. .++...+..+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3455555555555555554333333333334555544455555555544 344444444443
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=61.18 E-value=89 Score=28.81 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=43.2
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 576 IRTMPLKPTHA--VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 576 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
|...++.|... ++..-+..+.+.+++..|-.+.++++++.|. + ...++|.+++....+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~-------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-G-------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-S-------------HHHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-H-------------HHHHHHHHHHHHHhcC
Confidence 33345666443 5677788899999999999999999999985 1 1345677777777654
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.52 E-value=1.7e+02 Score=30.30 Aligned_cols=372 Identities=8% Similarity=-0.057 Sum_probs=191.4
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHH--
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL-- 129 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-- 129 (667)
..+.+.+++......+.. +..+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+..
T Consensus 80 ~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 80 NELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCHHH
Confidence 556667888888887766 43455555557778888899888888888877663 3345567777777765553332
Q ss_pred HHHHHHHHHHhC-----------CCCchH-HHHHHHHHHHhcCCHHHHHHHhcccCCCChh---hHHHHHHHHHHcCChh
Q 005966 130 GIALHGRVLITG-----------FDMDTF-VGNCLIAMYMNFGEVKAARKVFDAMWEHSVV---SWNTLISGYFKNAYAK 194 (667)
Q Consensus 130 a~~~~~~~~~~~-----------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~ 194 (667)
..+=++.+...| ++++.. ....++..+. +...+....... .++.. .+...+.-+.+ .+.+
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHH
Confidence 122222222222 112211 1122222221 222333332222 11111 11112233333 3779
Q ss_pred HHHHHHHHHHHCCCCCChHH----HHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 005966 195 EALVVFDWMLKSGVEPDCAS----VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270 (667)
Q Consensus 195 ~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (667)
.|...+........ .+... ...+.......+....+...+....... .+.....-.+....+.|+++.|...|
T Consensus 232 ~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~ 308 (618)
T 1qsa_A 232 NARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (618)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999988865432 23222 2333434555553445555555544433 23333444555566789999999999
Q ss_pred hhcCCC--C-hhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCC
Q 005966 271 DRMSER--D-VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347 (667)
Q Consensus 271 ~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (667)
+.|... + ....--+..++...|+.++|..+|..+.. + .+|-.++.+ .+.|..-.. . ...+.+.
T Consensus 309 ~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa-~~Lg~~~~~-~------~~~~~~~ 374 (618)
T 1qsa_A 309 ARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAA-QRIGEEYEL-K------IDKAPQN 374 (618)
T ss_dssp HHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHH-HHTTCCCCC-C------CCCCCSC
T ss_pred HHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHH-HHcCCCCCC-C------CCCCChh
Confidence 999863 2 22233455677889999999999999864 2 234333322 111110000 0 0000000
Q ss_pred -ch-----HHhHHHHHHHhcCCHHHHHHHHhccCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCC----CCCHHH
Q 005966 348 -VI-----VETALIDMYAKCNLVKLSFQVFARTSKK-KTVPWNAILAGCVHNGLARKAVELFRQMLVEVV----EPNDAT 416 (667)
Q Consensus 348 -~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~ 416 (667)
.. ....-+..+...|....|...+..+... +......+.......|.++.++.........+. -| ..
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P--~~ 452 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP--LA 452 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC--CT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC--cc
Confidence 00 0112244566778888888777665432 222233444445567777777665543322210 01 12
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCch
Q 005966 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450 (667)
Q Consensus 417 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 450 (667)
|..++....+...++...-.--...+.++.|...
T Consensus 453 y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 453 YNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp THHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 4555555555555554443333345666666554
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.20 E-value=36 Score=33.96 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch---hHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA---DHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
.++.+++.|...+.++.|..+..+..--....++. ..+-.++..+.-.+++.+|.+.+..+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35556666666666666666666553100000111 11112344455566666666555543
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.03 E-value=1.1e+02 Score=27.20 Aligned_cols=46 Identities=4% Similarity=-0.033 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHhcCCCCchH--HhHHHHHHHhcCCHHHHHHHHh
Q 005966 327 YYLKRGRSLHAWTIKQNLECEVIV--ETALIDMYAKCNLVKLSFQVFA 372 (667)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 372 (667)
+.......+.+.+.+.|..++..- -.+.+...++.|..+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 333333445555555554443211 1122333344455555555554
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.50 E-value=59 Score=26.54 Aligned_cols=29 Identities=3% Similarity=-0.087 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
.|......+-..|++.+|..+++..++..
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444445555555555555555443
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.47 E-value=2.1e+02 Score=29.83 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHhcccCC---CChhhHHHHHHHHHH
Q 005966 152 LIAMYMNFGEVKAARKVFDAMWE---HSVVSWNTLISGYFK 189 (667)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 189 (667)
+|-.+.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 56678899999999888876632 111355555666653
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.20 E-value=1e+02 Score=26.08 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=40.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch
Q 005966 495 HGHGETAVSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553 (667)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 553 (667)
.++..++..+|..|...|+--.. .-|......+...|++++|.++|+.-++ .+..|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 34466788888888887765443 3466666667778888888888888777 4555543
No 285
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.67 E-value=1.1e+02 Score=25.70 Aligned_cols=152 Identities=15% Similarity=0.002 Sum_probs=75.0
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005966 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527 (667)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (667)
+...-...+..+.+.+..+....+.+.+.. ++...-...+.++...+..+ +...+.++.. .++...-...+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 333333344444444443333334444433 55555555556666666542 3333333333 35655555566666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 607 (667)
.+.+..+ +...+..+.. .++..+-...+.++.+.+.. ++...+..+-..++..+-...+.+....|+. .+...
T Consensus 101 ~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-~~~~~ 173 (201)
T 3ltj_A 101 GQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAA 173 (201)
T ss_dssp HHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHH
T ss_pred HHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHH
Confidence 6666543 2333333322 25555555566666666653 3444444433346666666666666666653 34555
Q ss_pred HHHhh
Q 005966 608 AKWLF 612 (667)
Q Consensus 608 ~~~~~ 612 (667)
+..++
T Consensus 174 L~~~l 178 (201)
T 3ltj_A 174 MEKLA 178 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.75 E-value=1.5e+02 Score=27.22 Aligned_cols=69 Identities=9% Similarity=0.175 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCCCCCchH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD--LQQAMNIHCYLIRYGFLSVVEV 451 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 451 (667)
...++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 567788888889999999988888521111 11233344444444332 4556667777776665444333
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.07 E-value=67 Score=24.98 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCC---hhhHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 005966 149 GNCLIAMYMNFGEVKAARKVFDAMWEHS---VVSWNTLISGYFKNAY--AKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 211 (667)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3456777778888888888888886552 2233444444444332 3556677777776665544
No 288
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.17 E-value=1.2e+02 Score=25.44 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcc
Q 005966 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223 (667)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 223 (667)
+|..+....+..+.+.++.+....+.+.+..++...-...+.++...+..+ +...+..+.. .|+...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444444444444555554444444444444445444444555555555432 3333333332 244444445555555
Q ss_pred cCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 005966 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303 (667)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 303 (667)
+.++.+....+...+ . .++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.|. .++...+..
T Consensus 102 ~~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 102 QIGDERAVEPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp HHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 444433322222222 1 33555555556666666554433333333444555555555555555544 334444444
Q ss_pred HH
Q 005966 304 MQ 305 (667)
Q Consensus 304 m~ 305 (667)
+.
T Consensus 177 ~l 178 (201)
T 3ltj_A 177 LA 178 (201)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.10 E-value=1.8e+02 Score=27.50 Aligned_cols=67 Identities=7% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCCCCCc
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA--DLQQAMNIHCYLIRYGFLSVV 449 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 449 (667)
.+.++.-|...++.++|.+.++++..-... .......+..+.-+.+ ..+....++..+.+.++-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 466777777778888888887777521111 1223333444444432 234455566666655544433
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.70 E-value=72 Score=28.02 Aligned_cols=23 Identities=9% Similarity=-0.179 Sum_probs=15.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005966 183 LISGYFKNAYAKEALVVFDWMLK 205 (667)
Q Consensus 183 li~~~~~~~~~~~A~~~~~~m~~ 205 (667)
-++.+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566677777777777766543
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.63 E-value=32 Score=34.31 Aligned_cols=69 Identities=17% Similarity=0.080 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhCCCCCC----HH--HH-HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCch
Q 005966 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT----HA--VW-GALLGACVIHGNVELGEVAAKWLFELEPENPGN 621 (667)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 621 (667)
...++.++..|...+.++.|..++.+...+.. .. .| ..++..+.-++++.+|.+.+..++..-|.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 45678888888888999999999888753321 11 22 233455667888888888888888888775433
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.19 E-value=1.3e+02 Score=25.40 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=61.5
Q ss_pred ccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHH
Q 005966 69 EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148 (667)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 148 (667)
.+..++...-...+..+.+.|.. .+...+..+.. .++...-...+.++...++.+.. ..+..+. -.++..+
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l---~~~~~~v 97 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAV-EPLIKAL---KDEDGWV 97 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHT---TCSSHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHH---cCCCHHH
Confidence 33444444444445555555442 33333333332 22333333444444444432222 2222221 1345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCc
Q 005966 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226 (667)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 226 (667)
-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++.+.+
T Consensus 98 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 98 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 555556666666544444444444445554545555555555443 23333333332 234334344444444443
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.00 E-value=1.3e+02 Score=25.39 Aligned_cols=64 Identities=6% Similarity=0.066 Sum_probs=43.0
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhCCC
Q 005966 382 WNAILAGCVH---NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-----LQQAMNIHCYLIRYGFL 446 (667)
Q Consensus 382 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 446 (667)
.--+|+++.+ ..+++.|+-++-+|.+.| .|....-..++.+.-.-|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3345566554 589999999999999999 7776666666666655553 33444555555566643
No 294
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=45.93 E-value=50 Score=33.01 Aligned_cols=53 Identities=15% Similarity=-0.029 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
+...+-....+.|...|.++..+.|++...|..||.+....|+.-+|.-++-+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 33334444455666666666666666666666666665555555555544443
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.88 E-value=52 Score=26.50 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCC---hhhHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 005966 149 GNCLIAMYMNFGEVKAARKVFDAMWEHS---VVSWNTLISGYFKNAY--AKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 211 (667)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3456777777788888888888876552 2233344444444322 3456677777776665544
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.45 E-value=88 Score=27.44 Aligned_cols=87 Identities=7% Similarity=0.039 Sum_probs=43.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHcC-CCCC----CcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005966 81 VMKMYAQNGASHDSLKMFLGMLRLG-EYNP----DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 155 (667)
-+..+....++++|+++.++..+.- +.++ +.......++.-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 4667778888898888888776530 1121 1112222222222222233333333333 22 3445555555666
Q ss_pred HHhcCCHHHHHHHhc
Q 005966 156 YMNFGEVKAARKVFD 170 (667)
Q Consensus 156 ~~~~g~~~~A~~~~~ 170 (667)
+.+.|+.++|..+|-
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 666666666666553
No 297
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.44 E-value=1.9e+02 Score=25.59 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHh
Q 005966 459 YSKCGSLESAHKIFS 473 (667)
Q Consensus 459 ~~~~g~~~~A~~~~~ 473 (667)
.++.|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344455555555554
No 298
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=41.00 E-value=2.4e+02 Score=28.30 Aligned_cols=69 Identities=10% Similarity=-0.087 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHH----HHHH-hhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 581 LKPTHAVWGALLGACVIHGNVELGEV----AAKW-LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 581 ~~p~~~~~~~l~~~~~~~g~~~~A~~----~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
..+|......+-..+..+|-.++-.+ .++. +.+..|++......|..-|.+.|++-+|.+++..+-..+
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45577666677777777776544332 1111 122456677788888888999999999999988887663
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.94 E-value=1.7e+02 Score=24.98 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhCC
Q 005966 382 WNAILAGCVH---NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-----LQQAMNIHCYLIRYGF 445 (667)
Q Consensus 382 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 445 (667)
+--+|+++.+ ..+++.|+-++-+|.+.|..|....-..++.+.-.-|. ...|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4445666655 58999999999999999988888777777777655543 3455555555556664
No 300
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.83 E-value=31 Score=22.41 Aligned_cols=48 Identities=19% Similarity=0.024 Sum_probs=28.0
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCC
Q 005966 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 654 (667)
+..+.+.++.|+ ......-..+-...|+.+.|+..+-.|...+.+++.
T Consensus 11 e~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344455556666 333333333334567788888888887776665554
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.54 E-value=1.6e+02 Score=25.22 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=12.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC
Q 005966 187 YFKNAYAKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 187 ~~~~~~~~~A~~~~~~m~~~g~~p~ 211 (667)
.++.|+.+-...+++.+.+.|..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3445555555555554444444433
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.38 E-value=1.4e+02 Score=24.81 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=24.4
Q ss_pred HHhcCCHHHHHHHhcccC-C---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005966 156 YMNFGEVKAARKVFDAMW-E---HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 211 (667)
.+..|+.+....++..-. . .+..-++.|.. .++.|+. ++++.+.+.|..|+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCC
Confidence 355667777776666543 1 12222333333 2344443 34455555565554
No 303
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.91 E-value=1.3e+02 Score=25.37 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=33.7
Q ss_pred HHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcC
Q 005966 384 AILAGCVH---NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428 (667)
Q Consensus 384 ~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 428 (667)
-+|+++.+ ..+++.|+-++-+|.+.|..|....-..++.+.-.-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555544 5899999999999999998887777676766665544
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.28 E-value=1.3e+02 Score=23.34 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHhcCCCCC
Q 005966 250 WNALVDMYVKCGSVNEARLVFDRMSERD---VVTWTSMINGYALNGD--VRNALGLFQLMQFEGVRPN 312 (667)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 312 (667)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888899999999999987652 2334445555555432 4567788888877665443
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.25 E-value=2.6e+02 Score=25.68 Aligned_cols=64 Identities=8% Similarity=-0.004 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCCh--hhHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCChH
Q 005966 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSV--VSWNTLISGYFKNAY--AKEALVVFDWMLKSGVEPDCA 213 (667)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 213 (667)
...++.-|...|+.++|...++++..|.. .....+|..-...++ -+.+-.++..+.. ++-+...
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~ 73 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTD 73 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45678889999999999999999876642 222333333333333 2345556677754 4443333
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.12 E-value=1.6e+02 Score=25.49 Aligned_cols=31 Identities=3% Similarity=-0.076 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 585 HAVWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 585 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
...|......+...|++++|..+|+..++..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3345555555666677777777777766644
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.63 E-value=1.9e+02 Score=23.26 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCCC
Q 005966 296 NALGLFQLMQFEGVRP 311 (667)
Q Consensus 296 ~a~~~~~~m~~~~~~p 311 (667)
++.++|..|..+||--
T Consensus 83 dp~~if~~L~~~~IG~ 98 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGT 98 (152)
T ss_dssp CHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHCCCcH
Confidence 3667777777666543
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.40 E-value=1.7e+02 Score=32.26 Aligned_cols=33 Identities=6% Similarity=-0.210 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFE-LEPENP 619 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 619 (667)
-|..++..+-+.+-++-+.++.+.+++ ..++|+
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 456666667777777777777777775 334443
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.87 E-value=42 Score=24.52 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=29.2
Q ss_pred CChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHH
Q 005966 58 GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDS 94 (667)
Q Consensus 58 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
.+.+.|.++++.++.+.+.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888776665444
No 310
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.35 E-value=3e+02 Score=25.35 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=68.3
Q ss_pred HHhCCCchHHHHHHHHhHHcCCCCCCc-------ccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005966 85 YAQNGASHDSLKMFLGMLRLGEYNPDN-------YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 157 (667)
+.+.|++++|++.|+.++.. ++... .....++..| ..+--|..+ ++.+..++.+...-+.=+.+|.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~--i~l~~v~~~~e~~e~~eli~ic---rEYilal~i--El~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR--ITLLMVDDAEDEKLAHKILETA---REYILGLSI--ELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHTCCBCSSHHHHHHHHHHHHH---HHHHHHHHH--HHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHhcCCHHHHHHHHHHHHHH--hheeeeccHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHhcCcccHHHHHHHHHHh
Confidence 46799999999999999865 22111 1122223222 122222222 2223333333223333333443
Q ss_pred hcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHH
Q 005966 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237 (667)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (667)
-.-++.... -.-+...-+....+.+++..|..+-+++++.+..| ...++|++++..
T Consensus 197 T~c~LQp~H---------~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~---------------~~a~qArkil~~ 252 (325)
T 3mv2_A 197 TKAKLSPIH---------RTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG---------------PRAEQARKIKNK 252 (325)
T ss_dssp GGSCCCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---------------HHHHHHHHHHHH
T ss_pred ccCCCcHHH---------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHH
Confidence 332222222 12355667778889999999999999999865433 234556666666
Q ss_pred HHhc
Q 005966 238 VAGG 241 (667)
Q Consensus 238 ~~~~ 241 (667)
..+.
T Consensus 253 ce~~ 256 (325)
T 3mv2_A 253 ADSM 256 (325)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 6554
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.82 E-value=3.5e+02 Score=25.96 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=7.8
Q ss_pred HhcCCHHHHHHHHhh
Q 005966 258 VKCGSVNEARLVFDR 272 (667)
Q Consensus 258 ~~~g~~~~A~~~~~~ 272 (667)
+..|+.+-+..+++.
T Consensus 121 ~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 121 AREGHVETVLALLEK 135 (437)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhC
Confidence 344555555555544
No 312
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.06 E-value=1.6e+02 Score=25.19 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCh--HHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005966 197 LVVFDWMLKSGVEPDC--ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274 (667)
Q Consensus 197 ~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 274 (667)
.++++.+.+.|..++. ..-.+.+...+..|+.+.++.+++. ...+......-.+.+...+..|+.+-+..+++.-.
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 101 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q ss_pred C----CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHH--HHHHhhcccchHHHHHHHHHHHHhcCCCCc
Q 005966 275 E----RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS--LLSACSSLYYLKRGRSLHAWTIKQNLECEV 348 (667)
Q Consensus 275 ~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 348 (667)
. ++...++.+..+..... .++++.+.+.|..++...... .+...+..|..+ +.+.+.+.|..++.
T Consensus 102 ~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 102 MDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHA 172 (237)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTC
T ss_pred CCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCC
Q ss_pred hH--HhHHHHHHHhcCCHHHHHHHHhccCCCCccc--HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005966 349 IV--ETALIDMYAKCNLVKLSFQVFARTSKKKTVP--WNAILAGCVHNGLARKAVELFRQMLVE 408 (667)
Q Consensus 349 ~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~ 408 (667)
.- -.+.+...++.|+.+-+.-+++.-...+... -.+.+......|+...++++.+.+.++
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 313
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.70 E-value=33 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=18.5
Q ss_pred CCCchHHHHHHHHhHHcCCCCCCcc
Q 005966 88 NGASHDSLKMFLGMLRLGEYNPDNY 112 (667)
Q Consensus 88 ~g~~~~a~~~~~~~~~~~~~~~~~~ 112 (667)
.-+++.|+..|..+...+.+||+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3478899999988887656777643
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.90 E-value=1.1e+02 Score=24.71 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHhcCCCCC
Q 005966 250 WNALVDMYVKCGSVNEARLVFDRMSERD---VVTWTSMINGYALNGD--VRNALGLFQLMQFEGVRPN 312 (667)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 312 (667)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888899999999999987652 2334445555555332 4567778888877665443
No 315
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.70 E-value=2e+02 Score=24.65 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIK 478 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~ 478 (667)
+-.|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 44566777777777777776664
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.04 E-value=1.4e+02 Score=20.50 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=38.5
Q ss_pred HHHHHCCCCCChHHHHHHHHHcccCc-chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCC
Q 005966 201 DWMLKSGVEPDCASVVSVLPACGYLK-EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262 (667)
Q Consensus 201 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (667)
+.|.+.|++++..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....++.+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777776544 34455555544 455677888888777665666666666677766664
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.19 E-value=1.3e+02 Score=24.40 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=47.6
Q ss_pred chHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCHH
Q 005966 91 SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT--GFDMDTFVGNCLIAMYMNFGEVK 163 (667)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 163 (667)
.+.+++-+....+..|.+++. .-..++..+...+..-.|.++++.+.+. +...+..|--.-+..+...|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 455666666555443666643 3455566676767777899999999887 76667666555677777776543
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.78 E-value=2.8e+02 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=13.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCC
Q 005966 287 GYALNGDVRNALGLFQLMQFEGVRPN 312 (667)
Q Consensus 287 ~~~~~~~~~~a~~~~~~m~~~~~~p~ 312 (667)
..+..|+.+-+..+++.+.+.|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 33455666665556555555554443
No 319
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.40 E-value=1.4e+02 Score=19.84 Aligned_cols=45 Identities=9% Similarity=-0.202 Sum_probs=29.4
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 005966 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF 159 (667)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 159 (667)
++.++...+...-.++++..++++.+.| ..+..+|-.-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4566666666666777777777777777 55666665555555543
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.19 E-value=2.5e+02 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 005966 295 RNALGLFQLMQFEGVRPN 312 (667)
Q Consensus 295 ~~a~~~~~~m~~~~~~p~ 312 (667)
+.+.++|..|...||--.
T Consensus 131 ~~p~~if~~L~~~~IG~~ 148 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQE 148 (223)
T ss_dssp SCHHHHHHHHHHTTCSTT
T ss_pred CCHHHHHHHHHHCCcchh
Confidence 456667777777666433
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.61 E-value=62 Score=27.58 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=13.5
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005966 560 VDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~ 579 (667)
+-.|.+.|.+++|.+++++.
T Consensus 121 V~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 34566777777777777765
No 322
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.10 E-value=2.8e+02 Score=22.58 Aligned_cols=52 Identities=6% Similarity=0.082 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch
Q 005966 501 AVSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553 (667)
Q Consensus 501 a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 553 (667)
+..+|..|...|+--.. .-|......+...|++.+|.++|..-++ .+..|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHH
Confidence 66677777777664443 3455566666777888888888887777 4555544
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.98 E-value=1.8e+02 Score=19.96 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=35.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCC
Q 005966 404 QMLVEVVEPNDATLNSLLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464 (667)
Q Consensus 404 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (667)
.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556677666544 34445555543 455667777777666655566666666666665553
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.31 E-value=5e+02 Score=24.86 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=11.0
Q ss_pred HHHHhcCCHHHHHHHhccc
Q 005966 154 AMYMNFGEVKAARKVFDAM 172 (667)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~ 172 (667)
...++.|+.+-+..+++.-
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhCC
Confidence 3445566666666666543
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.09 E-value=2.8e+02 Score=21.97 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=41.5
Q ss_pred HHHHHCCCCCChHHHHHHHHHcccCc-chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCH
Q 005966 201 DWMLKSGVEPDCASVVSVLPACGYLK-EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263 (667)
Q Consensus 201 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (667)
+.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4466778777655443 344444455 5677888999888877666777766667777777754
No 326
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.50 E-value=1.2e+02 Score=22.02 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=28.5
Q ss_pred CCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHH
Q 005966 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399 (667)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 399 (667)
...++|.++++.+..+++..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45778888888888888888888888887666655443
No 327
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.46 E-value=1e+02 Score=20.01 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred chHHHHHHHHhHHcCCCCCCcccHHHHHHHh
Q 005966 91 SHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121 (667)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 121 (667)
.++|...|.+|++. ..-+..-||...++.+
T Consensus 2 ~eEae~aF~~lL~~-~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKE-NQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHH-TTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-cCCCCCCcHHHHHHHh
Confidence 36778888888877 3444556777777776
No 328
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=22.11 E-value=7e+02 Score=27.00 Aligned_cols=148 Identities=15% Similarity=0.064 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhH-HHHHHH
Q 005966 485 WSVIIAGYGMHG--HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH-YTCIVD 561 (667)
Q Consensus 485 ~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~ 561 (667)
-+.++..++..| -.+.|.+.|++ . ..|......-+.++...+. ......++.+.+.....|.+.. |..+.
T Consensus 679 r~~~l~~l~~~~~~~~~~a~~~~~~---~--a~nmt~~~~al~~l~~~~~-~~~~~~~~~f~~~~~~~~~~~~k~~~~~- 751 (867)
T 2gtq_A 679 RNVCRAFVLRADPAHIETVAEKYGE---M--AQNMTHEWGILSAVNGNES-DTRNRLLAQFADKFSDDALVMDKYFALV- 751 (867)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHTHHH---H--CSSHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHH---h--CCCHhHHHHHHHHHHhcCc-ccHHHHHHHHHHHHcCCchHHHHHHHHH-
Confidence 455666666655 22334444442 1 2343333333446666543 3444566666664544455433 33333
Q ss_pred HHhhcCChHHHHHHHHhCC---CC-CCHHHHHHHHHHHHh------cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 562 LLGRAGRLDEAYDLIRTMP---LK-PTHAVWGALLGACVI------HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~---~~-p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
+ ...+.+-..++..-+. .. .++.....++.++.. ..+-..=.-+.+.++++++-||.+-..|+..+.+
T Consensus 752 a--~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~~~~~~n~~~fh~~~g~gy~~~~~~~~~l~~~np~~a~r~~~~~~~ 829 (867)
T 2gtq_A 752 G--SSRRSDTLQQVRTALQHPKFSLENPNKARSLIGSFSRNVPHFHAEDGSGYRFIADKVIEIDRFNPQVAARLVQAFNL 829 (867)
T ss_dssp H--HCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHTCHHHHTCTTSHHHHHHHHHHHHHHTTCHHHHHHHGGGGTT
T ss_pred h--cCCChHHHHHHHHHhhCcCCCcCCchHHHHHHHHHhhCccccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHHhh
Confidence 3 3333333333333332 11 255566667776643 2233333556667789999999999999999888
Q ss_pred cCCchHHHHH
Q 005966 632 VRRWKDAENV 641 (667)
Q Consensus 632 ~g~~~~A~~~ 641 (667)
-.++++..+.
T Consensus 830 ~~~~~~~~~~ 839 (867)
T 2gtq_A 830 CNKLEPHRKN 839 (867)
T ss_dssp GGGBCHHHHH
T ss_pred hhccCHHHHH
Confidence 8888776653
No 329
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.00 E-value=3.6e+02 Score=22.77 Aligned_cols=14 Identities=7% Similarity=-0.239 Sum_probs=5.9
Q ss_pred HHcCChHHHHHHHH
Q 005966 493 GMHGHGETAVSLFK 506 (667)
Q Consensus 493 ~~~~~~~~a~~~~~ 506 (667)
.+.|+.+-+.-+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44444444433333
No 330
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.76 E-value=1.4e+02 Score=31.18 Aligned_cols=65 Identities=15% Similarity=0.014 Sum_probs=50.5
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCch
Q 005966 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636 (667)
Q Consensus 569 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 636 (667)
.+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+...++.+|.+.|.-.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 345666666664 33344455666778999999999999999999999999999999998887443
No 331
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.73 E-value=2.3e+02 Score=24.71 Aligned_cols=89 Identities=10% Similarity=-0.054 Sum_probs=44.1
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhh-------HHHHHHHhh--cccchHHHHHHHHHHHHhc---------CCCCc
Q 005966 287 GYALNGDVRNALGLFQLMQFEGVRPNSLT-------IGSLLSACS--SLYYLKRGRSLHAWTIKQN---------LECEV 348 (667)
Q Consensus 287 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~ 348 (667)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+-+..+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34566777776667776666655554332 223333321 5566666666655443211 11000
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhccC
Q 005966 349 IVETALIDMYAKCNLVKLSFQVFARTS 375 (667)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 375 (667)
..-.+.+...+..|+.+-+..+++.-.
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 011223344455677777776666543
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.62 E-value=3.8e+02 Score=24.88 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=10.4
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 005966 458 IYSKCGSLESAHKIFSEI 475 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~ 475 (667)
..+..|+.+-+..+++.-
T Consensus 179 ~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHHHTTCHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHhcc
Confidence 334556666666666543
No 333
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.36 E-value=2.7e+02 Score=21.57 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=36.8
Q ss_pred HHHHCCCCCChHHHHHHHHHcccCc-chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCH
Q 005966 202 WMLKSGVEPDCASVVSVLPACGYLK-EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263 (667)
Q Consensus 202 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (667)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677776654433 333444444 5667888888888776666666666666666666643
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.86 E-value=2.1e+02 Score=22.53 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCH
Q 005966 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263 (667)
Q Consensus 203 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (667)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455555553332 22223333344455666666666665555555555556666666644
No 335
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.49 E-value=1.2e+02 Score=16.68 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.-...+.-|...|..++|..+-++|+.
T Consensus 4 YSaQW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 4 YSAQWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 334556667777888888777666653
No 336
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.02 E-value=2.5e+02 Score=26.24 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=7.3
Q ss_pred HhcCCHHHHHHHHhh
Q 005966 258 VKCGSVNEARLVFDR 272 (667)
Q Consensus 258 ~~~g~~~~A~~~~~~ 272 (667)
+..|+.+-+..+++.
T Consensus 181 ~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRNREALDLMMDT 195 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555555443
Done!