BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005967
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|B Chain B, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|C Chain C, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|D Chain D, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
Length = 227
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 8/135 (5%)
Query: 15 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLL 74
EVED+ +L +K V + +GA+AS YQ+ R+E+V LGL W++D +
Sbjct: 78 EVEDLKNVLEGLK-----VDGIVAGALASRYQKERIENVARELGLKVYTPAWEKDPYQYM 132
Query: 75 QEMITNGINAITVKVAAMGLEPGKHLGKEIAFLD-PYLHKLKESYGINVCGEGGEYETLT 133
E+I G + V V+A GL LG+E+ + + L KL E YGI++ GEGGE+ET
Sbjct: 133 LEIIKLGFKVVFVAVSAYGLNE-SWLGRELNYKNLEELKKLSEKYGIHIAGEGGEFETFV 191
Query: 134 LDCPLFVNARIVLDE 148
LD P F A+IV+D+
Sbjct: 192 LDMPFF-KAKIVIDD 205
>pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase From Pyrococcus Furiosus, The Northeast
Structural Genomics Target Pfr23
pdb|3RK0|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Amp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|A Chain A, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|B Chain B, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
Length = 237
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 15 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLL 74
EVED+ +L+ +K Q + +GA+AS YQR R+E V LGL W +D
Sbjct: 78 EVEDLKRVLSGLKIQ-----GIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYX 132
Query: 75 QEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPY----LHKLKESYGINVCGEGGEYE 130
+E++ G V V+A GL+ LG+ LD L L E Y ++V GEGGE+E
Sbjct: 133 RELLNLGFKIXVVGVSAYGLDE-SWLGR---ILDESALEELITLNEKYKVHVAGEGGEFE 188
Query: 131 TLTLDCPLFVNARIVLDEFQVV 152
T LD PLF +IV+D+ + V
Sbjct: 189 TFVLDXPLF-KYKIVVDKAKKV 209
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP IGPYSQA L + ++GQ+G+DP + L +GG E +QAL+N + K C
Sbjct: 15 APGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDF 74
Query: 417 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL 476
+ VV + +A ++ KQ +F R+ +V + L
Sbjct: 75 TN-----VVKTTVLLADINDFN---TVNEIYKQYFKSNFPARAAYQV----------AAL 116
Query: 477 PKSALVEIKPI 487
PK + +EI+ +
Sbjct: 117 PKGSRIEIEAV 127
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 251 QKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEK 310
Q S G+ ++ + LK + L G D+ +V+ + ++D+N+F NE Y ++
Sbjct: 46 QLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSN- 104
Query: 311 CPCGVPSRSTIELPLLEVG 329
P+R+ ++ L G
Sbjct: 105 ----FPARAAYQVAALPKG 119
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|B Chain B, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|C Chain C, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|D Chain D, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|E Chain E, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|F Chain F, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
Length = 136
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP+ IGPYSQA L + ++GQLG+DP + L GG E +QAL N + K C
Sbjct: 13 APAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDF 72
Query: 417 S 417
+
Sbjct: 73 T 73
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
pdb|1X25|B Chain B, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
Length = 128
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 36/140 (25%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP +GPYSQA L ++GQ+ +DP T + G V+ Q L N + + K S+
Sbjct: 12 APKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSL 71
Query: 417 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVW---------HFEERSMSKVLDPI 467
S A+ FV FLK M ++ +F+++ ++V
Sbjct: 72 SDVAMAFV---------------------FLKDMNMFNDFNSVYAEYFKDKPPARVT--- 107
Query: 468 FLFVLASNLPKSALVEIKPI 487
V S LPK AL+EI I
Sbjct: 108 ---VEVSRLPKDALIEIAVI 124
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 262 RVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTI 321
R VL I+ + GF V +++ DMN F N Y ++ + P+R T+
Sbjct: 54 RQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKP-----PARVTV 108
Query: 322 ELPLLEVGLGKAYIEVLV 339
E+ L A IE+ V
Sbjct: 109 EVSRLP---KDALIEIAV 123
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP+ IG YSQA L + ++GQ+G+DP + L GG E +QAL+N + K C
Sbjct: 13 APAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDF 72
Query: 417 S 417
+
Sbjct: 73 T 73
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 251 QKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEK 310
Q G+ ++ + LK + L G D+ +V+ + ++D+N+F NE Y +
Sbjct: 44 QLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGN- 102
Query: 311 CPCGVPSRSTIELPLLEVG 329
+P+R+ ++ L G
Sbjct: 103 ----LPARAAYQVAALPKG 117
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 22/135 (16%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP IGPYSQA L +AGQ+ +DP T + G + Q L+N +A+ + S+
Sbjct: 10 APKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSL 69
Query: 417 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVW--HFEERSMSKVLDPIFLFVLAS 474
+ V+ + Y+ + ++ F K V+ +F E ++V V S
Sbjct: 70 ND-----VIKVTVYL---------KDMNDFAKMNEVYAEYFGESKPARVA------VEVS 109
Query: 475 NLPKSALVEIKPILY 489
LPK L+EI+ I Y
Sbjct: 110 RLPKDVLIEIEAIAY 124
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 259 DDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSR 318
D R VL+ I++ L G+ V+ + +Y+ DMN+FA NE Y ++ K P+R
Sbjct: 49 DQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESK-----PAR 103
Query: 319 STIELPLL 326
+E+ L
Sbjct: 104 VAVEVSRL 111
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|B Chain B, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|C Chain C, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
Length = 156
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 36/159 (22%)
Query: 331 GKAYIEVLVANDQSKRVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLC 390
G YIEV+ N AP IGPYSQA + + +GQ+ ++P T +
Sbjct: 29 GLXYIEVVKTNK--------------APEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVV 74
Query: 391 NGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFLKQM 450
+GG + +Q L+N + V + S++ VV + ++ + D+F K
Sbjct: 75 DGGIEEQAKQVLENLKNVLEAAGSSLNK-----VVKTTVFI---------KDXDSFAKVN 120
Query: 451 RVW--HFEERSMSKVLDPIFLFVLASNLPKSALVEIKPI 487
V+ +F E P V S LPK L+EI+ +
Sbjct: 121 EVYAKYFSEPY------PARSCVEVSKLPKGVLIEIEAV 153
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 248 QETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFIT 307
Q + G+ + + VL+ +++ L G V+ ++I D + FA NE Y K+ +
Sbjct: 69 QTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDXDSFAKVNEVYAKYFS 128
Query: 308 HEKCPCGVPSRSTIELPLLEVGL 330
P+RS +E+ L G+
Sbjct: 129 EP-----YPARSCVEVSKLPKGV 146
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
pdb|2B33|B Chain B, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
Length = 140
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP IGPYSQA + ++ ++GQ+ +DP T L G + E+ L+N +A+ + S+
Sbjct: 22 APKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSL 81
Query: 417 STSAIYFVVYCSTYVASSERL-KIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASN 475
VV + + S + ++ E + R P FV +
Sbjct: 82 KD-----VVKVTVFTTSMDYFQRVNEVYSRYFGDHR--------------PARSFVAVAQ 122
Query: 476 LPKSALVEIKPI 487
LP++ +EI+ I
Sbjct: 123 LPRNVEIEIEAI 134
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|B Chain B, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|C Chain C, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|D Chain D, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|E Chain E, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|F Chain F, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
Length = 127
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 344 SKRVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 403
+K ++H + AP+ IG YSQA + ++GQ+ LDP TM L G V+ Q +
Sbjct: 3 NKAIIHSDN----APAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFK 58
Query: 404 NSEAVAK 410
N AV +
Sbjct: 59 NLRAVCE 65
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYN|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYN|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYP|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYK|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Serine
Length = 129
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 249 ETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITH 308
+T + A + D R+ L+ +++ +V G G ++ + ++I+D+N+FA NE Y +F
Sbjct: 38 QTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDE 97
Query: 309 EKCPCGVPSRSTIELPLL 326
+ P+RS +++ L
Sbjct: 98 HQAT--YPTRSCVQVARL 113
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 249 ETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITH 308
+T + A + D R+ L+ + + +V G G ++ + ++I+D+N+FA NE Y +F
Sbjct: 38 QTGEIPADVQDQARLSLENVXAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDE 97
Query: 309 EKCPCGVPSRSTIELPLL 326
+ P+RS +++ L
Sbjct: 98 HQAT--YPTRSCVQVARL 113
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP+ IGPYSQ + + +GQ+ L P+ + NG + Q N +AV + S
Sbjct: 9 APAAIGPYSQGIIVNNMFYSSGQIPLT-PSGEMVNGDIKEQTHQVFSNLKAVLEEAGASF 67
Query: 417 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL 476
T VV + ++A E+ +++ Q H RS +V + L
Sbjct: 68 ET-----VVKATVFIADMEQFA---EVNEVYGQYFDTHKPARSCVEV----------ARL 109
Query: 477 PKSALVEIKPILYV 490
PK ALVEI+ I V
Sbjct: 110 PKDALVEIEVIALV 123
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 264 VLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIEL 323
V +++ L G + V+ ++I+DM +FA NE Y ++ K P+RS +E+
Sbjct: 52 VFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHK-----PARSCVEV 106
Query: 324 PLL 326
L
Sbjct: 107 ARL 109
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|B Chain B, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|C Chain C, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 143
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAK 410
AP+ IGPYSQA + +GQ+ LDP T L G ++ Q +N ++VA+
Sbjct: 28 APAAIGPYSQAIKAGNTVYXSGQIPLDPSTXELVE-GIEAQITQVFENLKSVAQ 80
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAK 410
AP +GPYSQA + ++GQ+ ++P T L GG ++AL N +A+ +
Sbjct: 4 APKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVE 57
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 346 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNS 405
+VLH S AP+ IGPY Q ++ +GQ+ ++P T + + Q+L N
Sbjct: 27 KVLHTDS----APAAIGPYIQGVDLGNMVLTSGQIPVNPATGEV-PADIAAQARQSLDNV 81
Query: 406 EAVAKCFNCSISTSAIYFVVYCSTYVASSERL-KIQEKLDAFLKQMRVWHFEERSMSKVL 464
+AV + ++ +V + +V + E F + V H+ RS +V
Sbjct: 82 KAVVEASGLTVGD-----IVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEV- 135
Query: 465 DPIFLFVLASNLPKSALVEIKPI 487
+ LPK +EI+ I
Sbjct: 136 ---------ARLPKDVGIEIEAI 149
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 250 TQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHE 309
T + A + R L +++ + G G ++ + +++ D+N+F NE Y F E
Sbjct: 63 TGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFD-E 121
Query: 310 KCPCGVPSRSTIELPLLEVGLG 331
P+RS +E+ L +G
Sbjct: 122 HNVAHYPARSCVEVARLPKDVG 143
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|B Chain B, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|C Chain C, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
Length = 130
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 250 TQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHE 309
T + A ++ R L+ +++ + + G ++ +++ D+N+FA N Y +F
Sbjct: 40 TGEVPADIVAQARQSLENVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKEN 99
Query: 310 KCPCGVPSRSTIELPLL--EVGL 330
P P+RS +E+ L +VGL
Sbjct: 100 NHP-NFPARSCVEVARLPKDVGL 121
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 346 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNS 405
+++H + AP+ IGPY QA ++ +GQ+ ++P T + P + QA Q+
Sbjct: 4 QIIHTEK----APAAIGPYVQAVDLGNLVLTSGQIPVNPATGEV----PADIVAQARQSL 55
Query: 406 EAVAKCFNCSISTSAIYFVVYCSTYVAS-SERLKIQEKLDAFLKQMRVWHFEERSMSKVL 464
E V + T+A +V + +V ++ + + + F K+ +F RS +V
Sbjct: 56 ENVKAIIEKAGLTAAD--IVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEV- 112
Query: 465 DPIFLFVLASNLPKSALVEIKPI 487
+ LPK +EI+ I
Sbjct: 113 ---------ARLPKDVGLEIEAI 126
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 249 ETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITH 308
+T + A + R L +++ + G G ++ +++ D+N+FA N TY F T
Sbjct: 38 KTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTE 97
Query: 309 EKCPCGVPSRSTIELPLL 326
P+RS +E+ L
Sbjct: 98 HNAT--FPARSXVEVARL 113
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|B Chain B, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|C Chain C, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|D Chain D, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|E Chain E, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|F Chain F, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|G Chain G, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|H Chain H, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|I Chain I, Crystal Structure Of Aldr From Streptococcus Mutans
Length = 125
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 264 VLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIEL 323
VLK I + L G D+ HV+ ++SD+++F NE Y + P+RS +E+
Sbjct: 53 VLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSD-----FPARSAVEV 107
Query: 324 PLLEVGLGKAYIEVL 338
L + K IEV+
Sbjct: 108 ARLPKDV-KIEIEVI 121
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVE--LEQALQNSEAV 408
AP+ IGPY Q + +L +GQ+ L P T + G T+E +Q L+N A+
Sbjct: 9 APAAIGPYVQGKIVGNLLFASGQVPLSPETGQVI--GTTIEEQTQQVLKNISAI 60
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CW4|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
Length = 124
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 416
AP+ IGPY+QA + ++GQ+ L P +L G V+ E+ +N +AV +
Sbjct: 9 APAAIGPYAQAVKAGGFVFVSGQIPL-APDGSLVEGDIRVQTERVXENLKAVLEA----- 62
Query: 417 STSAIYFVVYCSTYVASSE 435
+ S + VV + ++A E
Sbjct: 63 AGSGLSRVVQTTCFLADXE 81
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 256 GLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGV 315
+ D V++ I++ L V+ ++++++D+N FA N Y K+ K
Sbjct: 48 SIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHK----- 102
Query: 316 PSRSTIELPLLEVGL 330
P+RS + + L +G+
Sbjct: 103 PARSCVAVAALPLGV 117
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 357 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 403
AP +G YSQA + ++ +GQ+GLD T G T+E EQ+ Q
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGLDRKTGDF--AGKTIE-EQSKQ 76
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 403
S AP +G YSQA + ++ +GQ+GLD T G T+E EQ+ Q
Sbjct: 30 SPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFA--GKTIE-EQSKQ 76
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 403
S AP +G YSQA + + +GQ+GLD T G T+E EQ+ Q
Sbjct: 30 SPLAPEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFA--GKTIE-EQSKQ 76
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJK|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
Length = 128
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 264 VLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIEL 323
VL QI+ L G D HVL +Y+ D ++A N + ++ + P+R+ +E
Sbjct: 50 VLAQIDRWLAECGSDKAHVLDAVIYLRDXGDYAEXNGVWDAWVAAGR----TPARACVEA 105
Query: 324 PL 325
L
Sbjct: 106 RL 107
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 193 EKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEVTDNRLNISRRKKDNTFSICCWLQETQK 252
E GL F+VQ + + +V R ++ +T+ L++ +K
Sbjct: 237 ESIGLAFQVQDD-----------ILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 285
Query: 253 TSAGLLDDLRVVLKQI 268
+ L+DD R LKQ+
Sbjct: 286 KARDLIDDARQALKQL 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,265,193
Number of Sequences: 62578
Number of extensions: 714588
Number of successful extensions: 1555
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 47
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)