Query 005967
Match_columns 667
No_of_seqs 437 out of 2560
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2316 Predicted ATPase (PP-l 100.0 4.2E-59 9.2E-64 456.2 14.6 174 2-177 77-250 (277)
2 TIGR00290 MJ0570_dom MJ0570-re 100.0 7.8E-44 1.7E-48 360.0 17.8 153 11-175 69-222 (223)
3 COG2102 Predicted ATPases of P 100.0 8E-44 1.7E-48 353.9 17.4 150 14-175 73-223 (223)
4 TIGR00289 conserved hypothetic 100.0 5.4E-43 1.2E-47 353.9 19.1 151 13-176 71-222 (222)
5 PF01902 ATP_bind_4: ATP-bindi 100.0 4.3E-42 9.3E-47 346.9 15.5 148 12-171 70-218 (218)
6 TIGR03679 arCOG00187 arCOG0018 100.0 3.6E-38 7.9E-43 319.2 18.2 149 13-170 69-218 (218)
7 cd01994 Alpha_ANH_like_IV This 100.0 8.8E-38 1.9E-42 311.1 13.9 124 11-139 69-194 (194)
8 KOG2317 Putative translation i 99.9 8.3E-26 1.8E-30 210.8 11.0 126 347-490 5-130 (138)
9 COG0251 TdcF Putative translat 99.9 5.3E-24 1.2E-28 199.5 14.9 121 354-492 9-130 (130)
10 TIGR00004 endoribonuclease L-P 99.9 9E-24 2E-28 195.7 15.4 119 354-490 6-124 (124)
11 PRK11401 putative endoribonucl 99.9 2.3E-23 4.9E-28 194.8 15.1 122 354-491 7-128 (129)
12 PF01042 Ribonuc_L-PSP: Endori 99.9 2.5E-23 5.4E-28 192.0 14.1 118 356-490 3-121 (121)
13 TIGR03610 RutC pyrimidine util 99.9 4.4E-23 9.6E-28 192.5 15.3 119 354-490 8-126 (127)
14 cd06154 YjgF_YER057c_UK114_lik 99.9 4.2E-22 9.2E-27 183.6 14.0 116 354-488 3-119 (119)
15 cd06152 YjgF_YER057c_UK114_lik 99.9 5.1E-22 1.1E-26 182.1 13.5 111 363-489 2-114 (114)
16 cd06156 eu_AANH_C_2 A group of 99.9 1.8E-21 4E-26 179.4 13.9 118 364-488 1-118 (118)
17 cd02199 YjgF_YER057c_UK114_lik 99.9 4.2E-21 9.2E-26 182.5 13.2 118 354-488 6-141 (142)
18 cd02198 YjgH_like YjgH belongs 99.8 1.6E-20 3.5E-25 171.0 12.5 109 363-490 2-111 (111)
19 cd06150 YjgF_YER057c_UK114_lik 99.8 1.9E-20 4.1E-25 168.9 12.7 104 363-489 2-105 (105)
20 cd00448 YjgF_YER057c_UK114_fam 99.8 4.7E-19 1E-23 158.3 13.5 107 364-488 1-107 (107)
21 cd06153 YjgF_YER057c_UK114_lik 99.8 1E-18 2.2E-23 160.2 13.3 105 364-488 1-114 (114)
22 cd06151 YjgF_YER057c_UK114_lik 99.8 1.1E-17 2.4E-22 155.8 13.4 114 364-488 1-126 (126)
23 cd06155 eu_AANH_C_1 A group of 99.7 1.4E-17 3E-22 149.4 12.0 98 368-489 4-101 (101)
24 cd06155 eu_AANH_C_1 A group of 99.6 8.8E-16 1.9E-20 137.7 10.7 80 254-339 21-100 (101)
25 cd06150 YjgF_YER057c_UK114_lik 99.6 2.6E-15 5.7E-20 135.4 10.9 82 254-340 24-105 (105)
26 cd06152 YjgF_YER057c_UK114_lik 99.6 1.4E-14 3E-19 133.0 10.0 81 254-339 29-113 (114)
27 COG0251 TdcF Putative translat 99.6 1.5E-14 3.3E-19 135.7 10.4 83 254-341 46-128 (130)
28 TIGR03610 RutC pyrimidine util 99.5 1.7E-14 3.6E-19 134.8 9.6 81 254-340 45-125 (127)
29 PRK11401 putative endoribonucl 99.5 8.4E-14 1.8E-18 130.3 10.0 84 254-340 43-126 (129)
30 cd06154 YjgF_YER057c_UK114_lik 99.5 8.5E-14 1.8E-18 128.4 9.6 81 254-339 39-119 (119)
31 PF01042 Ribonuc_L-PSP: Endori 99.5 1.4E-13 3E-18 127.1 10.9 83 254-340 38-120 (121)
32 cd02198 YjgH_like YjgH belongs 99.5 1.2E-13 2.6E-18 125.9 8.5 82 254-340 28-110 (111)
33 TIGR00004 endoribonuclease L-P 99.5 4.6E-13 1E-17 124.1 11.8 80 255-340 44-123 (124)
34 cd00448 YjgF_YER057c_UK114_fam 99.4 4.5E-13 9.8E-18 119.6 10.3 81 254-339 27-107 (107)
35 cd06151 YjgF_YER057c_UK114_lik 99.4 9.9E-13 2.2E-17 122.6 9.8 85 254-339 36-126 (126)
36 cd02199 YjgF_YER057c_UK114_lik 99.4 9.1E-13 2E-17 125.5 9.0 80 255-339 52-141 (142)
37 cd06156 eu_AANH_C_2 A group of 99.4 3.1E-12 6.8E-17 118.1 12.0 82 254-338 28-117 (118)
38 cd06153 YjgF_YER057c_UK114_lik 99.4 2.2E-12 4.7E-17 118.5 9.6 79 254-339 31-114 (114)
39 PF14588 YjgF_endoribonc: YjgF 99.4 3.9E-12 8.5E-17 121.0 11.4 126 355-489 12-147 (148)
40 KOG2317 Putative translation i 98.9 2.6E-09 5.6E-14 100.5 7.8 81 254-340 49-129 (138)
41 TIGR00032 argG argininosuccina 98.1 6.7E-06 1.4E-10 90.8 7.8 93 18-114 93-189 (394)
42 cd01995 ExsB ExsB is a transcr 95.2 0.043 9.4E-07 53.2 6.6 81 19-102 64-156 (169)
43 PF14588 YjgF_endoribonc: YjgF 89.8 1.9 4.1E-05 41.8 8.8 78 257-339 59-146 (148)
44 PF03932 CutC: CutC family; I 85.9 1.3 2.9E-05 44.9 5.5 72 12-88 67-147 (201)
45 PRK11572 copper homeostasis pr 82.1 2.4 5.2E-05 44.5 5.4 94 13-118 69-168 (248)
46 TIGR03471 HpnJ hopanoid biosyn 77.2 6.2 0.00013 44.9 7.4 115 15-140 228-351 (472)
47 TIGR00007 phosphoribosylformim 67.6 34 0.00073 34.8 9.4 88 32-128 94-198 (230)
48 KOG4013 Predicted Cu2+ homeost 67.4 7.2 0.00016 39.5 4.2 80 12-97 76-162 (255)
49 PRK00748 1-(5-phosphoribosyl)- 58.2 61 0.0013 32.9 9.3 87 32-127 96-198 (233)
50 PRK13820 argininosuccinate syn 56.5 26 0.00056 39.3 6.6 85 18-105 96-183 (394)
51 PF09079 Cdc6_C: CDC6, C termi 54.7 10 0.00022 32.7 2.5 54 20-83 2-55 (85)
52 COG3142 CutC Uncharacterized p 54.3 27 0.00059 36.3 5.8 74 13-88 69-148 (241)
53 cd08768 Cdc6_C Winged-helix do 53.0 9.6 0.00021 32.6 2.1 55 19-83 8-62 (87)
54 cd04732 HisA HisA. Phosphorib 51.5 1.3E+02 0.0028 30.4 10.5 87 32-127 95-198 (234)
55 COG2179 Predicted hydrolase of 50.3 71 0.0015 31.9 7.7 96 14-119 46-167 (175)
56 PRK06843 inosine 5-monophospha 45.2 61 0.0013 36.5 7.3 88 32-127 165-264 (404)
57 COG5019 CDC3 Septin family pro 42.6 49 0.0011 36.7 5.9 60 576-651 112-174 (373)
58 cd01999 Argininosuccinate_Synt 40.8 65 0.0014 36.1 6.6 84 19-105 94-183 (385)
59 TIGR02026 BchE magnesium-proto 39.8 42 0.00091 38.6 5.2 114 15-139 223-350 (497)
60 PRK09061 D-glutamate deacylase 39.0 1.7E+02 0.0038 33.8 10.0 111 10-130 162-286 (509)
61 cd01992 PP-ATPase N-terminal d 38.9 1.7E+02 0.0036 28.3 8.6 66 19-85 84-164 (185)
62 cd03770 SR_TndX_transposase Se 37.8 82 0.0018 29.7 6.0 49 67-122 53-102 (140)
63 PRK04527 argininosuccinate syn 36.1 53 0.0011 37.0 5.0 83 19-105 97-187 (400)
64 PRK14561 hypothetical protein; 34.5 74 0.0016 31.9 5.4 54 22-78 87-144 (194)
65 cd02641 R3H_Smubp-2_like R3H d 34.4 80 0.0017 25.9 4.6 47 17-64 2-48 (60)
66 KOG2655 Septin family protein 30.7 72 0.0016 35.5 4.9 61 575-651 108-170 (366)
67 PRK13125 trpA tryptophan synth 30.5 3.5E+02 0.0076 28.0 9.8 73 16-90 87-161 (244)
68 PRK08349 hypothetical protein; 30.3 2.1E+02 0.0045 28.5 7.8 64 19-83 93-159 (198)
69 PRK05567 inosine 5'-monophosph 29.3 1.5E+02 0.0033 34.0 7.5 100 20-127 230-339 (486)
70 PF00735 Septin: Septin; Inte 29.2 1.2E+02 0.0025 32.5 6.1 64 572-651 84-154 (281)
71 PF00764 Arginosuc_synth: Argi 29.0 32 0.0007 38.5 1.9 83 20-105 94-181 (388)
72 COG0137 ArgG Argininosuccinate 28.9 61 0.0013 36.2 3.9 81 22-105 103-188 (403)
73 cd01712 ThiI ThiI is required 28.8 2.1E+02 0.0045 27.8 7.4 71 19-90 91-164 (177)
74 PF07876 Dabb: Stress responsi 28.8 68 0.0015 27.6 3.6 34 11-44 13-46 (97)
75 PRK05370 argininosuccinate syn 28.5 1.3E+02 0.0028 34.4 6.5 84 19-105 110-203 (447)
76 PRK01033 imidazole glycerol ph 27.7 3.6E+02 0.0078 28.2 9.4 60 60-127 140-204 (258)
77 PF02568 ThiI: Thiamine biosyn 27.5 1.8E+02 0.004 29.5 6.8 62 19-81 96-160 (197)
78 PRK15108 biotin synthase; Prov 27.4 4.4E+02 0.0095 28.9 10.3 103 16-123 78-188 (345)
79 TIGR03551 F420_cofH 7,8-dideme 27.3 1.8E+02 0.0039 31.7 7.3 70 15-86 71-156 (343)
80 TIGR02432 lysidine_TilS_N tRNA 27.0 3E+02 0.0066 26.7 8.3 67 19-86 87-169 (189)
81 PRK13111 trpA tryptophan synth 26.7 5.1E+02 0.011 27.4 10.2 69 22-94 109-177 (258)
82 cd04724 Tryptophan_synthase_al 26.5 4.8E+02 0.01 27.0 9.9 61 22-85 96-156 (242)
83 PRK08384 thiamine biosynthesis 26.0 2.2E+02 0.0048 31.9 7.7 66 19-85 272-341 (381)
84 PRK13585 1-(5-phosphoribosyl)- 25.7 3.8E+02 0.0082 27.3 9.0 19 69-87 150-168 (241)
85 cd04731 HisF The cyclase subun 23.8 4.6E+02 0.0099 26.8 9.2 24 20-44 60-83 (243)
86 PRK05096 guanosine 5'-monophos 23.8 2.5E+02 0.0054 31.1 7.4 71 12-90 106-181 (346)
87 cd01986 Alpha_ANH_like Adenine 23.5 1.3E+02 0.0028 26.5 4.4 47 19-66 49-103 (103)
88 PTZ00314 inosine-5'-monophosph 22.9 2.3E+02 0.0049 32.9 7.3 92 32-127 253-352 (495)
89 cd00331 IGPS Indole-3-glycerol 22.4 3.9E+02 0.0084 26.8 8.2 54 32-88 94-148 (217)
90 cd00408 DHDPS-like Dihydrodipi 21.2 3E+02 0.0065 28.7 7.4 114 15-146 16-141 (281)
91 cd02640 R3H_NRF R3H domain of 20.7 2.5E+02 0.0054 23.1 5.1 50 18-68 3-52 (60)
92 PRK02083 imidazole glycerol ph 20.5 5.3E+02 0.012 26.6 8.9 27 19-46 62-88 (253)
93 cd02646 R3H_G-patch R3H domain 20.2 2E+02 0.0043 23.2 4.5 45 17-64 2-46 (58)
94 PF04055 Radical_SAM: Radical 20.1 6.5E+02 0.014 22.7 8.7 116 14-138 28-153 (166)
No 1
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=100.00 E-value=4.2e-59 Score=456.15 Aligned_cols=174 Identities=65% Similarity=1.048 Sum_probs=170.4
Q ss_pred cccceeEecCCcchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCC
Q 005967 2 RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNG 81 (667)
Q Consensus 2 ~~q~~~y~~~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g 81 (667)
+||++.|..|++||+||||.+|+++|+++|.++||++|||+|+|||+|||+||+||||++|+|||+|||++||+||+.+|
T Consensus 77 ~nq~l~Y~~t~~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g 156 (277)
T KOG2316|consen 77 INQKLQYTKTEGDEVEDLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSG 156 (277)
T ss_pred cccccccccCCCchHHHHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeCCCCCCccccCcccccchHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccc
Q 005967 82 INAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAP 161 (667)
Q Consensus 82 ~~a~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~ 161 (667)
++|||||||+.||+. +||||+|++|.+.|.+|+++||+|+|||||||||||+|||+|+ |||++++.+++.|++|.++|
T Consensus 157 ~~AiiiKVAAigL~~-khLgksL~em~p~L~~l~~ky~vh~CGEGGEyET~vlDcPlF~-krivld~~evv~hs~~~~~~ 234 (277)
T KOG2316|consen 157 LDAIIIKVAAIGLGR-KHLGKSLDEMQPYLLKLNDKYGVHVCGEGGEYETFVLDCPLFK-KRIVLDEYEVVIHSADEVCP 234 (277)
T ss_pred CCeEEEEEeecccCh-hhhCcCHHHHHHHHHHhhhhhCceecCCCcceeEEEecccchh-heeeeeeeEEeecCccCccc
Confidence 999999999999995 7999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred eeeEEeeeeEEEeccC
Q 005967 162 VGVLHPLAFHLEYKAG 177 (667)
Q Consensus 162 ~~~l~~~~~~l~~k~~ 177 (667)
++|+++.+.+|+.|..
T Consensus 235 ~~v~~~~k~~l~~k~~ 250 (277)
T KOG2316|consen 235 VGVLRFLKLHLEKKHV 250 (277)
T ss_pred eeEEeeeecccccccc
Confidence 9999999999999854
No 2
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=100.00 E-value=7.8e-44 Score=360.00 Aligned_cols=153 Identities=41% Similarity=0.624 Sum_probs=143.5
Q ss_pred CCcchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEe
Q 005967 11 TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVA 90 (667)
Q Consensus 11 ~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~ 90 (667)
+.++|+|+|+++|+++ ||++||||||+|+|||+|+|++|+++||++++|||++||++||+||+++||+|+||+|+
T Consensus 69 ~~e~~~e~l~~~l~~~-----gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~ 143 (223)
T TIGR00290 69 TEEDEVEELKGILHTL-----DVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFVEEKFEARIIAVA 143 (223)
T ss_pred CccHHHHHHHHHHHHc-----CCCEEEECCcccHHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 4568889999999886 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeee
Q 005967 91 AMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLA 169 (667)
Q Consensus 91 ~~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~ 169 (667)
+.|||+ +||||+|++ +.+.|.+++++||+|||||||||||||+|||+|++ ||++...+++|+.. .||+.|++
T Consensus 144 a~gL~~-~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~PlF~~-~i~~~~~e~~~~~~-----~~~~~i~~ 216 (223)
T TIGR00290 144 AEGLDE-SWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPIFKK-RLEVKEIEKYWDGR-----NGHLGIKR 216 (223)
T ss_pred cCCCCh-HHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCccccc-ceeeeeeEEEEeCC-----eEEEEEEE
Confidence 999997 699999995 67788888899999999999999999999999995 99999999999953 48999999
Q ss_pred eEEEec
Q 005967 170 FHLEYK 175 (667)
Q Consensus 170 ~~l~~k 175 (667)
++|++|
T Consensus 217 ~~l~~k 222 (223)
T TIGR00290 217 AALVSK 222 (223)
T ss_pred EEEeeC
Confidence 999987
No 3
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=100.00 E-value=8e-44 Score=353.86 Aligned_cols=150 Identities=43% Similarity=0.641 Sum_probs=142.9
Q ss_pred chHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCC
Q 005967 14 DEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMG 93 (667)
Q Consensus 14 dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~g 93 (667)
+|+|+|.++|++++ +++|++|||+|+|||+|+|++|.++||++++|||++||++||++|+.+||+|+||+|+++|
T Consensus 73 ~eve~L~~~l~~l~-----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~g 147 (223)
T COG2102 73 REVEELKEALRRLK-----VDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEG 147 (223)
T ss_pred hhHHHHHHHHHhCc-----ccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccC
Confidence 79999999999984 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeeeEE
Q 005967 94 LEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFHL 172 (667)
Q Consensus 94 L~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~~l 172 (667)
||. +||||+|++ +.+.|.+|+++||+|||||||||||||+|+|+|+ +||++.+.+..|++ .+||+.|++++|
T Consensus 148 L~~-~~lGr~i~~~~~e~l~~l~~~ygi~~~GEgGEfeT~VldaP~F~-~ri~~~~~~~~w~~-----~~g~~~i~~~~l 220 (223)
T COG2102 148 LDE-SWLGRRIDREFLEELKSLNRRYGIHPAGEGGEFETLVLDAPLFK-KRIELVEYEKEWDG-----EWGYFEIKRAEL 220 (223)
T ss_pred CCh-HHhCCccCHHHHHHHHHHHHhcCCCccCCCcceEEEEecccccc-ceeEEeeeeeEEEC-----cEeEEEEeeeEe
Confidence 997 699999995 8999999999999999999999999999999999 49999999999995 478999999998
Q ss_pred Eec
Q 005967 173 EYK 175 (667)
Q Consensus 173 ~~k 175 (667)
.+|
T Consensus 221 ~~~ 223 (223)
T COG2102 221 VPK 223 (223)
T ss_pred ccC
Confidence 765
No 4
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=100.00 E-value=5.4e-43 Score=353.92 Aligned_cols=151 Identities=40% Similarity=0.584 Sum_probs=138.3
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCC
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAM 92 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~ 92 (667)
++|+|+|+++|+++ ||++|+||||+|+|||+|+|++|+++||++++|||++||++|+ +|++.||+|+||+|++.
T Consensus 71 e~~~~~l~~~l~~~-----gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l~-e~i~~Gf~aiIv~v~~~ 144 (222)
T TIGR00289 71 EKEVEDLAGQLGEL-----DVEALCIGAIESNYQKSRIDKVCRELGLKSIAPLWHADPEKLM-YEVAEKFEVIIVSVSAM 144 (222)
T ss_pred hHHHHHHHHHHHHc-----CCCEEEECccccHHHHHHHHHHHHHcCCEEeccccCCCHHHHH-HHHHcCCeEEEEEEccC
Confidence 45777777766443 8999999999999999999999999999999999999999987 89999999999999999
Q ss_pred CCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeeeE
Q 005967 93 GLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFH 171 (667)
Q Consensus 93 gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~~ 171 (667)
||++ +||||.|++ +.+.|.+|+++||+|||||||||||||+|||+|++ ||++.+.+++|++++ ||++|+++.
T Consensus 145 gL~~-~~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~-~i~i~~~e~~~~~~~-----g~~~i~~~~ 217 (222)
T TIGR00289 145 GLDE-SWLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKK-RIEVDEIEKFWDGVR-----GYCLIKRAS 217 (222)
T ss_pred CCCh-HHcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCc-ceeeEEeEEEEeCCc-----eEEEEeEEE
Confidence 9997 699999995 77888888999999999999999999999999995 999999999999643 799999999
Q ss_pred EEecc
Q 005967 172 LEYKA 176 (667)
Q Consensus 172 l~~k~ 176 (667)
|++|+
T Consensus 218 l~~k~ 222 (222)
T TIGR00289 218 LVDKT 222 (222)
T ss_pred EeeCC
Confidence 99884
No 5
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=100.00 E-value=4.3e-42 Score=346.86 Aligned_cols=148 Identities=43% Similarity=0.667 Sum_probs=116.3
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeC
Q 005967 12 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAA 91 (667)
Q Consensus 12 ~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~ 91 (667)
.++|+++|.++|+++ +|++|+||||+|+|||.|+|++|+++||++++|||++||++||+||++.||+++||+|++
T Consensus 70 ~~~~~~~l~~~l~~~-----~v~~vv~GdI~~~~~r~~~e~vc~~lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiIv~V~~ 144 (218)
T PF01902_consen 70 EEDYVEDLKEALKEL-----KVEAVVFGDIDSEYQRNWVERVCERLGLEAVFPLWGRDREELLREFIESGFEAIIVKVDA 144 (218)
T ss_dssp CCCHHHHHHHHHCTC-------SEEE--TTS-HHHHHHHHHHHHHCT-EEE-TTTT--HHHHHHHHHHTT-EEEEEEEES
T ss_pred cchhhHHHHHHHHHc-----CCCEEEECcCCcHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHCCCeEEEEEEec
Confidence 457888898888765 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeee
Q 005967 92 MGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAF 170 (667)
Q Consensus 92 ~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~ 170 (667)
.|||+ +||||+|++ ..+.|.+++++||+|||||||||||||+|||+|++ ||+|+..++++++ ..||+.|+++
T Consensus 145 ~~L~~-~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEfhT~V~dgPlF~~-~i~i~~~~~~~~~-----~~~~l~i~~~ 217 (218)
T PF01902_consen 145 DGLDE-SFLGRELDRELIEELPELNKKYGVDPCGEGGEFHTFVVDGPLFKK-RIEIEEGEIVWDG-----DYGYLDIELA 217 (218)
T ss_dssp TT--G-GGTT-B--HHHHHHHHHHHHHH---TT-TTTTEEEEEEE-TT-SC-EEEEEEEEEEEET-----TEEEEEEEEE
T ss_pred cCCCh-HHCCCCccHHHHHHHHHHHhhcCccccCCCeeEEEEEEEcccccc-eEEEEeeEEEEEC-----CEEEEEEEEC
Confidence 99997 699999994 67888888889999999999999999999999995 9999999999974 3689999876
Q ss_pred E
Q 005967 171 H 171 (667)
Q Consensus 171 ~ 171 (667)
+
T Consensus 218 ~ 218 (218)
T PF01902_consen 218 R 218 (218)
T ss_dssp E
T ss_pred C
Confidence 4
No 6
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=100.00 E-value=3.6e-38 Score=319.21 Aligned_cols=149 Identities=44% Similarity=0.646 Sum_probs=139.5
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCC
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAM 92 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~ 92 (667)
+++.++|+.+|++++++ |+++|++|||+|+|||.|+|++|.++||++++|||++|+++|+++|++.||+++|++|++.
T Consensus 69 ~~~~~~l~~~l~~~~~~--g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~~v~~~ 146 (218)
T TIGR03679 69 EKEVEDLKGALKELKRE--GVEGIVTGAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYLRELVERGFRFIIVSVSAY 146 (218)
T ss_pred hHHHHHHHHHHHHHHHc--CCCEEEECCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHHHHHHHCCCEEEEEEEecC
Confidence 57888999999999988 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeee
Q 005967 93 GLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAF 170 (667)
Q Consensus 93 gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~ 170 (667)
||++ +||||++++ +.+.|.+++++||+|||||||||||||+|||+|++ ||++...+++++. ..||++|+++
T Consensus 147 ~l~~-~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~hT~V~d~P~F~~-~i~~~~~~~~~~~-----~~~~~~i~~~ 218 (218)
T TIGR03679 147 GLDE-SWLGREIDEKYIEKLKALNKRYGINPAGEGGEYETLVLDAPLFKK-RIEIVEAEKKWSG-----GGGYLIIERA 218 (218)
T ss_pred CCCh-HHCCCccCHHHHHHHHHHHhhcCccccCCCceeeEEEEeccCCCC-ceEEEeeEEEEEC-----CeEEEEEEeC
Confidence 9998 699999995 67788888899999999999999999999999995 9999999999994 2489988764
No 7
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=100.00 E-value=8.8e-38 Score=311.08 Aligned_cols=124 Identities=56% Similarity=0.887 Sum_probs=116.4
Q ss_pred CCcchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEe
Q 005967 11 TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVA 90 (667)
Q Consensus 11 ~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~ 90 (667)
+.+++.++|+.+|++++++ |+++|++|||+|+|||+|+|++|+++||++++|||++||++||+||++.||+++||||+
T Consensus 69 ~~e~~~~~l~~~l~~~~~~--g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~ 146 (194)
T cd01994 69 EEEDEVEDLKELLRKLKEE--GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAIIIKVA 146 (194)
T ss_pred CchHHHHHHHHHHHHHHHc--CCCEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEEEEec
Confidence 3457888999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCcccccchHHH--HHhhhhcCCccccCCceeEEEeecCCCC
Q 005967 91 AMGLEPGKHLGKEIAFLDPYL--HKLKESYGINVCGEGGEYETLTLDCPLF 139 (667)
Q Consensus 91 ~~gL~~~~~lG~~l~~~~~~l--~~l~~~~g~~~cGEgGEyeT~vlD~PlF 139 (667)
+.||++ +||||+|++ +++ .++.++||+|||||||||||||+|||+|
T Consensus 147 ~~~L~~-~~lG~~~~~--~~~~~~~~~~~~g~~~~GE~GEyhT~V~d~P~f 194 (194)
T cd01994 147 AEGLDE-SWLGREIDE--MFIELLELNEKYGVDPCGEGGEYETLVLDGPLF 194 (194)
T ss_pred cCCCCH-HHCCCCccH--hhHHHHHhhhhcCcCccCCCceeeEEEEcCCCC
Confidence 999997 699999995 333 5788899999999999999999999998
No 8
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.3e-26 Score=210.77 Aligned_cols=126 Identities=36% Similarity=0.545 Sum_probs=119.8
Q ss_pred eeeecccCCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEE
Q 005967 347 VLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVY 426 (667)
Q Consensus 347 ~lhVqs~S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY 426 (667)
.+|+|++|+|||+++||||||+++++++|+|||+|++|.+|.+.++++.+|++++|+|+.++++++|++...+ |+.++|
T Consensus 5 ~l~v~v~S~~Ap~~igPYsQa~~~~~~~~~SGqigl~P~s~~~~~gg~~~q~~q~l~n~~~il~~a~a~~~~~-V~~~i~ 83 (138)
T KOG2317|consen 5 VLHVQVISYWAPANIGPYSQATKANDVVFISGQIGLDPPSMKLVEGGIVDQTEQALLNLEEILKAAGASLDLV-VKVTIF 83 (138)
T ss_pred eeEEEEeeccCCCCcCChhHheeeCCEEEEeccccccCCCCCEeccchHHHHHHHHHHHHHHHHHhccCcccc-EEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999986 999999
Q ss_pred EecCccchhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 427 CSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 427 ~sd~~~~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
+.| +.++..+++.|..|| ..+.|++.++.|.+||++..+||++++..
T Consensus 84 l~d---~~~f~~vn~v~~k~~--------------~~~~pars~~~v~alp~~~~ie~~~i~~~ 130 (138)
T KOG2317|consen 84 LAD---IIDFAAVNKVYAKYF--------------PKPNPARSCVQVAALPLNGKIEIECIAAE 130 (138)
T ss_pred Eec---chhHHHHHHHHHHHc--------------CCCCcchhhHHHhhcCCCCceEEeeehhh
Confidence 999 788999999999998 45679999999999999999999998864
No 9
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.3e-24 Score=199.46 Aligned_cols=121 Identities=30% Similarity=0.370 Sum_probs=110.0
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccC-CCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCcc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCN-GGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA 432 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~-gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~ 432 (667)
+..+|.+++||||++++++++|+|||+|++| ++.+.. +|+++|++++|+|+.++|+++|++++++ |++++|++|
T Consensus 9 ~~~~~~~~~~yS~av~~~~~vfvSGQi~~~~-~g~~v~~~d~~~Q~~~~l~ni~a~L~~aG~~~~~V-vk~~v~l~d--- 83 (130)
T COG0251 9 TPNAPAPIGPYSQAVVAGGLVFVSGQIPLDP-TGELVGGEDIEAQTRQALANIKAVLEAAGSTLDDV-VKVTVFLTD--- 83 (130)
T ss_pred CCCCCCCCCCccceEEECCEEEEeCcCCcCC-CCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEecC---
Confidence 3568889999999999999999999999999 555554 4999999999999999999999999999 999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 433 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 433 ~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
..+++.+|++|..||. ..++|+|++|+|..||++++|||+++|++++
T Consensus 84 ~~~f~~~n~v~~~~f~-------------~~~~PArs~V~v~~l~~~~~VEIeaiA~~~~ 130 (130)
T COG0251 84 MNDFAAMNEVYDEFFE-------------VGGYPARSAVGVALLPPDALVEIEAIAALPE 130 (130)
T ss_pred chHHHHHHHHHHHHhc-------------cCCCCceeEEEhhhCCCCCeEEEEEEEEecC
Confidence 7788999999999994 2358999999999999999999999998753
No 10
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=99.91 E-value=9e-24 Score=195.67 Aligned_cols=119 Identities=30% Similarity=0.396 Sum_probs=111.0
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
+.++|++.|+||||+++|+++|+|||+|++|.++.++++|+.+|++++|+|+.++|+++|++++++ +++++|+++ +
T Consensus 6 ~~~~~~~~~~ys~av~~g~~v~vSGq~~~~~~~g~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dv-v~~~vyv~~---~ 81 (124)
T TIGR00004 6 TDKAPAAIGPYSQAVKVGNTLFVSGQIPLDPSTGELVGGDIAEQAEQVLENLKAILEAAGLSLDDV-VKTTVFLTD---L 81 (124)
T ss_pred CCCCCCCCCCCcceEEECCEEEEeeeCCCcCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEeC---h
Confidence 578899999999999999999999999999988888778999999999999999999999999998 999999998 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.+++.++++|.+|| +.++|++++++|+.||++++|||+++|++
T Consensus 82 ~~~~~~~~~~~~~f--------------~~~~Pa~t~v~v~~L~~~~~vEIe~vA~~ 124 (124)
T TIGR00004 82 NDFAEVNEVYGQYF--------------DEPYPARSAVQVAALPKGVLVEIEAIAVK 124 (124)
T ss_pred HHHHHHHHHHHHHc--------------CCCCCceEEEECccCCCCCEEEEEEEEEC
Confidence 88999999999998 34689999999999999999999999973
No 11
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=99.90 E-value=2.3e-23 Score=194.80 Aligned_cols=122 Identities=23% Similarity=0.304 Sum_probs=110.5
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
+.++|++.||||||+++|+++|+|||+|++|.++.+. +|+.+|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 7 ~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~~~~~~-~d~~~Q~~~~~~ni~~~L~aaG~~~~~V-vk~~vyl~d---~ 81 (129)
T PRK11401 7 TQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIP-ADVQDQARLSLENVKAIVVAAGLSVGDI-IKMTVFITD---L 81 (129)
T ss_pred CCCCCCCCCCccceEEECCEEEEcCcCCccCCCCccC-cCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcc---H
Confidence 4678899999999999999999999999999888874 7999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEec
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 491 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~ 491 (667)
.++..++++|.+||... ..++|+|++++|+.||++++||||++|+++
T Consensus 82 ~~~~~~~~v~~~~f~~~-----------~~~~Part~v~v~~L~~~~~VEIe~~A~~~ 128 (129)
T PRK11401 82 NDFATINEVYKQFFDEH-----------QATYPTRSCVQVARLPKDVKLEIEAIAVRS 128 (129)
T ss_pred HHHHHHHHHHHHHhCCC-----------CCCCCceEEEEcccCCCCCeEEEEEEEEec
Confidence 89999999999998410 024799999999999999999999999864
No 12
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=99.90 E-value=2.5e-23 Score=192.04 Aligned_cols=118 Identities=33% Similarity=0.428 Sum_probs=106.3
Q ss_pred CCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchh
Q 005967 356 WAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSE 435 (667)
Q Consensus 356 wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d 435 (667)
.+|+|++|||||++.|+++|+|||+|.+|.++.+.++++++|++++|+|++++|+++|++++|+ +++++|+++ +.+
T Consensus 3 ~a~~p~~~Ys~av~~g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni~~~L~~~G~~~~dv-v~~~~yl~d---~~~ 78 (121)
T PF01042_consen 3 SAPEPIGPYSQAVRAGDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNIERILAAAGASLDDV-VKVTVYLTD---MSD 78 (121)
T ss_dssp TSCCCSSSSBSEEEETTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHHHHHHHHTTS-GGGE-EEEEEEESS---GGG
T ss_pred cCCCCCCCCCCEEEECCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhhhhhhhcCCCcceeE-eeeeehhhh---hhh
Confidence 4899999999999999999999999999988988789999999999999999999999999998 999999999 788
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCC-CCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 436 RLKIQEKLDAFLKQMRVWHFEERSMSKV-LDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 436 ~~~v~~~~~~~f~~~~~~~~~~~~~~~~-~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
++.+++.|.+||+ .. .+|++++++|+.|+++++|||+++|++
T Consensus 79 ~~~~~~v~~~~f~-------------~~~~~Pa~t~v~v~~L~~~~~vEIe~~A~v 121 (121)
T PF01042_consen 79 FPAVNEVWKEFFP-------------DHPHRPARTTVGVSALPPGALVEIEAIAVV 121 (121)
T ss_dssp HHHHHHHHHHHST-------------SSTS--EEEEEEESBSGGG-SEEEEEEEE-
T ss_pred hHHHHHHHHHHhc-------------ccCCCCcEEEEEeCcCCCCCcEEEEEEEEC
Confidence 9999999999984 22 579999999999999999999999975
No 13
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=99.90 E-value=4.4e-23 Score=192.49 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=109.0
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
+...|.+.+|||||+++|+++|+|||+|.+|++..+.++|+++|++++|+|++++|+++|++++|+ +++++|++| +
T Consensus 8 ~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~g~~~~~~d~~~Q~~~~l~ni~~iL~~aG~~~~dv-v~~~iyl~d---~ 83 (127)
T TIGR03610 8 PAGTSKPLAPFVPGTLADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLETIKSVIETAGGTMDDV-TFNHIFIRD---W 83 (127)
T ss_pred CCCCCCCCCCCCCeEEECCEEEEeccCCcCCCCCeeCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---H
Confidence 356788889999999999999999999999976666678999999999999999999999999999 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
++++.++++|.+|| +.++|++++++|..|+++++||||++|++
T Consensus 84 ~~~~~~~~~~~~~f--------------~~~~Pa~t~v~v~l~~p~~lVEIe~vA~~ 126 (127)
T TIGR03610 84 ADYAAINEVYAEYF--------------PGEKPARYCIQCGLVKPDALVEIASVAHI 126 (127)
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEeccCCCCCEEEEEEEEEe
Confidence 89999999999998 35679999999977788999999999985
No 14
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.88 E-value=4.2e-22 Score=183.60 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=106.7
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
+.|.|++.++|||++++|+++|+|||+|+++.++ +.++++++|++++|+|+.++|+++|++++++ +++++|+++ .
T Consensus 3 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~-~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dV-vk~~vyl~d---~ 77 (119)
T cd06154 3 SGSPWEEQAGYSRAVRVGNWVFVSGTTGYDYDGM-VMPGDAYEQTRQCLEIIEAALAEAGASLEDV-VRTRMYVTD---I 77 (119)
T ss_pred CCCCcccccCcccEEEECCEEEEeCcCcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---H
Confidence 3677888899999999999999999999999766 4568999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCC-CCCCeEEEEEEE
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL-PKSALVEIKPIL 488 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~L-P~~AlVEIe~iA 488 (667)
+++..+++.|.+|| ++++|+|++++|+.| +++++||||++|
T Consensus 78 ~~~~~~~~~~~~~f--------------~~~~Part~v~v~~L~~~~~lVEIe~~A 119 (119)
T cd06154 78 ADFEAVGRAHGEVF--------------GDIRPAATMVVVSLLVDPEMLVEIEVTA 119 (119)
T ss_pred HHHHHHHHHHHHHc--------------CCCCCceEEEEecccCCCCcEEEEEEEC
Confidence 89999999999998 347899999999999 899999999986
No 15
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.88 E-value=5.1e-22 Score=182.06 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=101.1
Q ss_pred CcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcC-CCCcceeEEEEEEEecCccchhHHHHHH
Q 005967 363 PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFN-CSISTSAIYFVVYCSTYVASSERLKIQE 441 (667)
Q Consensus 363 pYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG-~sl~dv~V~~tvY~sd~~~~~d~~~v~~ 441 (667)
|||||+++|+++|+|||+|.+|+++.+ ++|+++|++++|+|++++|+++| ++++++ +++++|++|..+..+++.+++
T Consensus 2 ~ys~av~~g~~v~~SGq~g~d~~g~~~-~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dV-vk~tvyltd~~~~~~~~~~~~ 79 (114)
T cd06152 2 HYSQAVRIGDRIEISGQGGWDPDTGKI-PEDLEEEIDQAFDNVELALKAAGGKGWEQV-YKVNSYHVDIKNEEAFGLMVE 79 (114)
T ss_pred CCCCeEEECCEEEEeccCCcCCCCCcc-CcCHHHHHHHHHHHHHHHHHHhCCCCHHHE-EEEEEEEecCCcHHHHHHHHH
Confidence 799999999999999999999998786 68999999999999999999999 999999 999999999432368899999
Q ss_pred HHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC-CCCeEEEEEEEE
Q 005967 442 KLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP-KSALVEIKPILY 489 (667)
Q Consensus 442 ~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP-~~AlVEIe~iA~ 489 (667)
+|++|| ++++|++++++|++|+ ++++||||++|+
T Consensus 80 ~~~~~f--------------~~~~Pa~t~v~V~~L~~p~~lVEIe~~A~ 114 (114)
T cd06152 80 NFKKWM--------------PNHQPIWTCVGVTALGLPGMRVEIEVDAI 114 (114)
T ss_pred HHHHHc--------------CCCCCCeEEEEeccCCCCCcEEEEEEEEC
Confidence 999988 3568999999999996 579999999985
No 16
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.87 E-value=1.8e-21 Score=179.43 Aligned_cols=118 Identities=32% Similarity=0.433 Sum_probs=99.7
Q ss_pred cccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHHHHH
Q 005967 364 YSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKL 443 (667)
Q Consensus 364 YSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~~~ 443 (667)
||||+.+++++|+|||+|++|.++.++++++++|++++|+|++++|+++|+ +++ +++++|++| +.+++.++++|
T Consensus 1 yS~av~~~~~i~vSGQ~g~d~~~~~~~~~~~~~Q~~qal~Ni~~vL~~aG~--~dV-vk~~iyl~d---~~~~~~~~~v~ 74 (118)
T cd06156 1 YSQAIVVPKVAYISGQIGLIPATMTLLEGGITLQAVLSLQHLERVAKAMNV--QWV-LAAVCYVTD---ESSVPIARSAW 74 (118)
T ss_pred CCceEEECCEEEEEeeCCccCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC--CCE-EEEEEEEcC---hHHHHHHHHHH
Confidence 899999999999999999999988888889999999999999999999999 888 999999999 78999999999
Q ss_pred HHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 005967 444 DAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 488 (667)
Q Consensus 444 ~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA 488 (667)
.+||..-...... +.-...++|++++++|+.||++++|||++++
T Consensus 75 ~~~f~~~~~~~~~-~~~~~~~~P~~t~v~V~~L~~~~~VEie~i~ 118 (118)
T cd06156 75 SKYCSELDLEDES-RNESDDVNPPLVIVVVPELPRGALVEWQGIA 118 (118)
T ss_pred HHHhcCccccccc-cccccCCCCcEEEEEcccCCCCCeEEEEEeC
Confidence 9999410000000 0000125899999999999999999999874
No 17
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.85 E-value=4.2e-21 Score=182.50 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=100.5
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCC----Cccc----CCCHHHHHHHHHHHHHHHHHHcCCCCc---ceeEE
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPT----MTLC----NGGPTVELEQALQNSEAVAKCFNCSIS---TSAIY 422 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~s----m~l~----~gdi~~Q~~~aL~nl~aVL~aaG~sl~---dv~V~ 422 (667)
+..+|.+.++||||+++|+++|+|||+|++|.+ +.+. ++++.+|++++|+|+.++|+++|++++ ++ ++
T Consensus 6 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~~~~g~i~~~~~~~d~~~Qt~~~~~Ni~~vL~~aG~~~~~~~dV-vk 84 (142)
T cd02199 6 LPPAPAPVGNYVPAVRTGNLLYVSGQLPRVDGKLVYTGKVGADLSVEEGQEAARLCALNALAALKAALGDLDRVKRV-VR 84 (142)
T ss_pred CCCCCCCCCccceEEEECCEEEEeCcCCCCCCCccccCccccccChHHHHHHHHHHHHHHHHHHHHhcCChhhcCCE-EE
Confidence 467889999999999999999999999999863 2332 346889999999999999999999987 88 99
Q ss_pred EEEEEecCccchhHHHH-------HHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 005967 423 FVVYCSTYVASSERLKI-------QEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 488 (667)
Q Consensus 423 ~tvY~sd~~~~~d~~~v-------~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA 488 (667)
+++|++| +.+++.+ +++|.+||. +.++|+|++++|+.||++++|||+++|
T Consensus 85 ~~vyl~d---~~~~~~~~~~~~~~~~v~~~~f~-------------~~~~Part~v~V~~L~~~~~VEIe~~A 141 (142)
T cd02199 85 LTGFVNS---APDFTEQPKVANGASDLLVEVFG-------------EAGRHARSAVGVASLPLNAAVEVEAIV 141 (142)
T ss_pred EEEEEec---hHHhhhchhhhHHHHHHHHHHcC-------------CCCCCceEEEEhhhCCCCCEEEEEEEE
Confidence 9999999 5555553 667777772 346899999999999999999999997
No 18
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.84 E-value=1.6e-20 Score=171.00 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=98.7
Q ss_pred CcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHHHH
Q 005967 363 PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEK 442 (667)
Q Consensus 363 pYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~~ 442 (667)
+||||+++|+++|+|||+|.++.+. + ++|+.+|++++|+|++++|+++|++++++ +++++|+++ ..++++.+++.
T Consensus 2 ~ys~av~~g~~l~vSGq~~~d~~g~-~-~~d~~~Q~~~~~~ni~~~L~~aG~~~~dv-vk~~vyl~~--~~~~~~~~~~~ 76 (111)
T cd02198 2 GYSPAVRVGDTLFVSGQVGSDADGS-V-AEDFEAQFRLAFQNLGAVLEAAGCSFDDV-VELTTFHVD--MAAHLPAFAAV 76 (111)
T ss_pred CCcceEEECCEEEEecccCcCCCCC-c-CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEec--cHHHHHHHHHH
Confidence 7999999999999999999998644 4 68999999999999999999999999998 999999997 24789999999
Q ss_pred HHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC-CCCeEEEEEEEEe
Q 005967 443 LDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP-KSALVEIKPILYV 490 (667)
Q Consensus 443 ~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP-~~AlVEIe~iA~v 490 (667)
|.+|| ++++|++++++|.+|+ ++++||||++|++
T Consensus 77 ~~~~f--------------~~~~Pa~t~v~V~~L~~~~~~vEIe~~A~~ 111 (111)
T cd02198 77 KDEYF--------------KEPYPAWTAVGVAWLARPGLLVEIKVVAVR 111 (111)
T ss_pred HHHHc--------------CCCCCceehhhhhhcCCCCcEEEEEEEEEC
Confidence 99998 3568999999999998 5899999999963
No 19
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.84 E-value=1.9e-20 Score=168.89 Aligned_cols=104 Identities=21% Similarity=0.162 Sum_probs=95.7
Q ss_pred CcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHHHH
Q 005967 363 PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEK 442 (667)
Q Consensus 363 pYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~~ 442 (667)
+||||+++|+++|+|||+|.++ ++|+.+|++++|+|++++|+++|++++|+ +++++|++| +++++.+++.
T Consensus 2 ~~s~av~~g~~v~iSGq~~~~~------~~~~~~Q~~~~~~nl~~~L~~~G~~~~dv-vk~~vyl~d---~~~~~~~~~~ 71 (105)
T cd06150 2 RMSQAVVHNGTVYLAGQVADDT------SADITGQTRQVLAKIDALLAEAGSDKSRI-LSATIWLAD---MADFAAMNAV 71 (105)
T ss_pred CcCCEEEECCEEEEeCcCCcCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcc---HHHHHHHHHH
Confidence 7999999999999999999987 47899999999999999999999999999 999999999 7899999999
Q ss_pred HHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 005967 443 LDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 489 (667)
Q Consensus 443 ~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~ 489 (667)
|.+||. +.++|+++++++..++++++|||+++|.
T Consensus 72 ~~~~f~-------------~~~~Pa~t~v~~~l~~~~~lvEIe~~Aa 105 (105)
T cd06150 72 WDAWVP-------------PGHAPARACVEAKLADPGYLVEIVVTAA 105 (105)
T ss_pred HHHHcC-------------CCCCCCeEEEEecccCCCCEEEEEEEEC
Confidence 999983 3468999999987667899999999984
No 20
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.80 E-value=4.7e-19 Score=158.30 Aligned_cols=107 Identities=32% Similarity=0.389 Sum_probs=98.9
Q ss_pred cccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHHHHH
Q 005967 364 YSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKL 443 (667)
Q Consensus 364 YSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~~~ 443 (667)
|||++.+++++|+|||+|.+|.+. ..++++.+|++++|+|+.++|+++|+++.++ +++++|+++ +++++.+++.|
T Consensus 1 ys~~~~~~~~~~~sGq~~~~~~~~-~~~~~~~~Q~~~~~~ni~~~L~~~g~~~~~i-v~~~~yv~~---~~~~~~~~~~~ 75 (107)
T cd00448 1 YSQAVRVGNLVFVSGQIPLDPDGE-LVPGDIEAQTRQALENLEAVLEAAGGSLDDV-VKVTVYLTD---MADFAAVNEVY 75 (107)
T ss_pred CCCeEEECCEEEEeccCCcCCCCc-ccCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEec---HHHHHHHHHHH
Confidence 899999999999999999999873 4468999999999999999999999999998 999999999 88999999999
Q ss_pred HHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 005967 444 DAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 488 (667)
Q Consensus 444 ~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA 488 (667)
.+||+ ..++|++++++|+.||++++|||+++|
T Consensus 76 ~~~~~-------------~~~~Pa~t~v~v~~l~~~~~VEie~~a 107 (107)
T cd00448 76 DEFFG-------------EGPPPARTAVGVAALPPGALVEIEAIA 107 (107)
T ss_pred HHHhC-------------CCCCCceEEEEeccCCCCCEEEEEEEC
Confidence 99984 236899999999999999999999985
No 21
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.79 E-value=1e-18 Score=160.24 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=92.1
Q ss_pred ccccccc----CCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC-----CcceeEEEEEEEecCccch
Q 005967 364 YSQATLH----KEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCS-----ISTSAIYFVVYCSTYVASS 434 (667)
Q Consensus 364 YSQAv~~----g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~s-----l~dv~V~~tvY~sd~~~~~ 434 (667)
||||+.+ |+++|+|||+|++|.+ .+.++|+++|++++|+||+++|+++|++ ++++ +++++|++| +.
T Consensus 1 ~s~a~~~~~~~g~~v~vSGq~~~d~~g-~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dV-vk~~vyl~d---~~ 75 (114)
T cd06153 1 FSRATLLAAGGRTHLFISGTASIVGHG-TVHPGDVEAQTRETLENIEALLEAAGRGGGAQFLADL-LRLKVYLRD---RE 75 (114)
T ss_pred CCCceeeccCCCcEEEEEeECcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCccchhhe-eEEEEEEcc---HH
Confidence 8999888 8899999999999965 4467899999999999999999999999 9999 999999999 78
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 005967 435 ERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 488 (667)
Q Consensus 435 d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA 488 (667)
+++.++++|.+||. +++| ++++++.-++++++||||++|
T Consensus 76 ~~~~~~~v~~~~f~--------------~~~P-~t~~~~~l~~p~~lvEIe~~A 114 (114)
T cd06153 76 DLPAVRAILAARLG--------------PAVP-AVFLQADVCRPDLLVEIEAVA 114 (114)
T ss_pred HHHHHHHHHHHHcC--------------CCCC-EEEEEeeecCCCcEEEEEEEC
Confidence 99999999999983 3456 466666545789999999986
No 22
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.75 E-value=1.1e-17 Score=155.75 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=93.1
Q ss_pred cccccccC---CEEEEeecccCCCCCC----cc-cCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCcc---
Q 005967 364 YSQATLHK---EVLQMAGQLGLDPPTM----TL-CNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA--- 432 (667)
Q Consensus 364 YSQAv~~g---~~vfISGQIpl~P~sm----~l-~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~--- 432 (667)
|||++.+. +++|+|||+|.++... .+ ..+|+++|++++|+|++++|+++|++++++ +++++|+++...
T Consensus 1 ~s~~~~v~~~~~~i~vSGq~~~~~d~~~~~g~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~dV-vk~~vyl~~~~~~~~ 79 (126)
T cd06151 1 IAQAVEVPAGAATIYLSGTVPAVVNASAPKGSPARYGDTETQTISVLKRIETILQSQGLTMGDV-VKMRVFLVADPALDG 79 (126)
T ss_pred CCceEEeCCCceEEEEeccCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEecCccccc
Confidence 79998885 7999999999865431 12 347999999999999999999999999999 999999985322
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCC-CCeEEEEEEE
Q 005967 433 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPK-SALVEIKPIL 488 (667)
Q Consensus 433 ~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~-~AlVEIe~iA 488 (667)
..+++.+++.|.+||... ..+++|++++++|++|+. +++|||+++|
T Consensus 80 ~~~~~~~~~~~~~~f~~~----------~~~~~Pa~t~v~V~~L~~p~~~VEIe~iA 126 (126)
T cd06151 80 KMDFAGFMKAYRQFFGTA----------EQPNKPARSTLQVAGLVNPGWLVEIEVVA 126 (126)
T ss_pred hhhHHHHHHHHHHHhccc----------cCCCCCceEEEEeeecCCCCcEEEEEEEC
Confidence 237889999999998410 011589999999999975 7999999986
No 23
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.74 E-value=1.4e-17 Score=149.38 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=88.9
Q ss_pred cccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHHHHHHHHH
Q 005967 368 TLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFL 447 (667)
Q Consensus 368 v~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~~~~~~f 447 (667)
.+.|+++|+|||+|.+| ++|+++|++++|+|+.++|+++|++++|+ +++++|++| +++++.+++.|.+||
T Consensus 4 ~~~g~~v~vSG~~~~~~------~~d~~~Q~~~v~~ni~~~L~~aG~~~~dV-v~~~iyl~d---~~~~~~~n~~~~~~f 73 (101)
T cd06155 4 NRTGGLLWISNVTASES------DETVEEQMESIFSKLREILQSNGLSLSDI-LYVTLYLRD---MSDFAEVNSVYGTFF 73 (101)
T ss_pred EEECCEEEEecCCCCCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---HHHHHHHHHHHHHHc
Confidence 35699999999999997 57899999999999999999999999999 999999999 789999999999998
Q ss_pred HHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 005967 448 KQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 489 (667)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~ 489 (667)
. +.++|+|+++++ .|+++++|||+++|+
T Consensus 74 ~-------------~~~~Par~~v~~-~l~~~~lvEIe~vA~ 101 (101)
T cd06155 74 D-------------KPNPPSRVCVEC-GLPEGCDVQLSCVAA 101 (101)
T ss_pred C-------------CCCCCceEEEEe-ccCCCCEEEEEEEEC
Confidence 3 346899999997 677999999999984
No 24
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.64 E-value=8.8e-16 Score=137.71 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
++|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+++ +||+|+++++.++ ++ ..+
T Consensus 21 ~~d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~~~----~~Par~~v~~~l~-~~-~lv 94 (101)
T cd06155 21 DETVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFDKP----NPPSRVCVECGLP-EG-CDV 94 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCC----CCCceEEEEeccC-CC-CEE
Confidence 46999999999999999999999999999999999999999999999999999864 3799999998654 33 468
Q ss_pred EEEeee
Q 005967 334 YIEVLV 339 (667)
Q Consensus 334 ~iev~a 339 (667)
+|++++
T Consensus 95 EIe~vA 100 (101)
T cd06155 95 QLSCVA 100 (101)
T ss_pred EEEEEE
Confidence 888775
No 25
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.62 E-value=2.6e-15 Score=135.44 Aligned_cols=82 Identities=28% Similarity=0.416 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|++++||+++++|++||++|+.+|++|.+||+.. +||+|+||+++++.++ .++
T Consensus 24 ~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~~----~~Pa~t~v~~~l~~~~-~lv 98 (105)
T cd06150 24 SADITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPPG----HAPARACVEAKLADPG-YLV 98 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCCC----CCCCeEEEEecccCCC-CEE
Confidence 46999999999999999999999999999999999999999999999999999863 2699999998766544 468
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||++++
T Consensus 99 EIe~~Aa 105 (105)
T cd06150 99 EIVVTAA 105 (105)
T ss_pred EEEEEEC
Confidence 8888753
No 26
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.56 E-value=1.4e-14 Score=133.03 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcC-CCcCcEEEEEEEecCc---ccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccc
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYG-FDWGHVLYIHLYISDM---NEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVG 329 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG-~sl~dVv~vtvyL~Dm---~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~ 329 (667)
.+|+++|++++|+||+.+|+++| ++++||+++++|++|| ++|+.+|++|.+||+.+ +|+|+|++++.|..+
T Consensus 29 ~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~~-----~Pa~t~v~V~~L~~p 103 (114)
T cd06152 29 PEDLEEEIDQAFDNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPNH-----QPIWTCVGVTALGLP 103 (114)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCCC-----CCCeEEEEeccCCCC
Confidence 46899999999999999999999 9999999999999999 79999999999999876 499999999988766
Q ss_pred cceeEEEeee
Q 005967 330 LGKAYIEVLV 339 (667)
Q Consensus 330 ~~~v~iev~a 339 (667)
..+++||+++
T Consensus 104 ~~lVEIe~~A 113 (114)
T cd06152 104 GMRVEIEVDA 113 (114)
T ss_pred CcEEEEEEEE
Confidence 5678888764
No 27
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.5e-14 Score=135.70 Aligned_cols=83 Identities=29% Similarity=0.446 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|.||+.+|+++|.+++||+++++||+||++|+.+|++|.+||... ++|+|+||++..|+++. .+
T Consensus 46 ~~d~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~l~d~~~f~~~n~v~~~~f~~~----~~PArs~V~v~~l~~~~-~V 120 (130)
T COG0251 46 GEDIEAQTRQALANIKAVLEAAGSTLDDVVKVTVFLTDMNDFAAMNEVYDEFFEVG----GYPARSAVGVALLPPDA-LV 120 (130)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCchHHHHHHHHHHHHhccC----CCCceeEEEhhhCCCCC-eE
Confidence 45999999999999999999999999999999999999999999999999999874 37999999999988554 58
Q ss_pred EEEeeecc
Q 005967 334 YIEVLVAN 341 (667)
Q Consensus 334 ~iev~aa~ 341 (667)
+||+++..
T Consensus 121 EIeaiA~~ 128 (130)
T COG0251 121 EIEAIAAL 128 (130)
T ss_pred EEEEEEEe
Confidence 99988754
No 28
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=99.55 E-value=1.7e-14 Score=134.84 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++.++.++ .++
T Consensus 45 ~~d~~~Q~~~~l~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~~~f~~~-----~Pa~t~v~v~l~~p~-~lV 118 (127)
T TIGR03610 45 VGDAAAQTRHVLETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYAEYFPGE-----KPARYCIQCGLVKPD-ALV 118 (127)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCC-----CCcEEEEEeccCCCC-CEE
Confidence 46899999999999999999999999999999999999999999999999999865 599999999776654 468
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 119 EIe~vA~ 125 (127)
T TIGR03610 119 EIASVAH 125 (127)
T ss_pred EEEEEEE
Confidence 9988764
No 29
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=99.50 E-value=8.4e-14 Score=130.34 Aligned_cols=84 Identities=27% Similarity=0.523 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.++ +.+|+|+||+++.|+.+ ..+
T Consensus 43 ~~d~~~Q~~~~~~ni~~~L~aaG~~~~~Vvk~~vyl~d~~~~~~~~~v~~~~f~~~~--~~~Part~v~v~~L~~~-~~V 119 (129)
T PRK11401 43 PADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQ--ATYPTRSCVQVARLPKD-VKL 119 (129)
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHhCCCC--CCCCceEEEEcccCCCC-CeE
Confidence 468999999999999999999999999999999999999999999999999998642 13699999999988754 468
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 120 EIe~~A~ 126 (129)
T PRK11401 120 EIEAIAV 126 (129)
T ss_pred EEEEEEE
Confidence 8888765
No 30
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.49 E-value=8.5e-14 Score=128.41 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|++++||+++++|++|+++|+.+|++|.+||+.+ +|+|++++++.|..+..++
T Consensus 39 ~~d~~~Q~~~~~~ni~~~L~~aG~~~~dVvk~~vyl~d~~~~~~~~~~~~~~f~~~-----~Part~v~v~~L~~~~~lV 113 (119)
T cd06154 39 PGDAYEQTRQCLEIIEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGDI-----RPAATMVVVSLLVDPEMLV 113 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCC-----CCceEEEEecccCCCCcEE
Confidence 46999999999999999999999999999999999999999999999999999875 5999999999883334467
Q ss_pred EEEeee
Q 005967 334 YIEVLV 339 (667)
Q Consensus 334 ~iev~a 339 (667)
+||+++
T Consensus 114 EIe~~A 119 (119)
T cd06154 114 EIEVTA 119 (119)
T ss_pred EEEEEC
Confidence 888753
No 31
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=99.49 E-value=1.4e-13 Score=127.13 Aligned_cols=83 Identities=24% Similarity=0.417 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+... .+|+|+||+++.|+ +..++
T Consensus 38 ~~~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~~---~~Pa~t~v~v~~L~-~~~~v 113 (121)
T PF01042_consen 38 PGDIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDHP---HRPARTTVGVSALP-PGALV 113 (121)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSST---S--EEEEEEESBSG-GG-SE
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhcccC---CCCcEEEEEeCcCC-CCCcE
Confidence 689999999999999999999999999999999999999999999999999999872 47999999999998 55568
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+|++++.
T Consensus 114 EIe~~A~ 120 (121)
T PF01042_consen 114 EIEAIAV 120 (121)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8887753
No 32
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.47 E-value=1.2e-13 Score=125.89 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecC-cccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccce
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISD-MNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGK 332 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~D-m~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~ 332 (667)
.+|+++|++++|+||+.+|+++|++++||+++++|++| +++|+.+|++|.+||+.+ +|+|+++++..|+.+...
T Consensus 28 ~~d~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~~-----~Pa~t~v~V~~L~~~~~~ 102 (111)
T cd02198 28 AEDFEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKEP-----YPAWTAVGVAWLARPGLL 102 (111)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCCC-----CCceehhhhhhcCCCCcE
Confidence 46899999999999999999999999999999999996 589999999999999865 599999999888765567
Q ss_pred eEEEeeec
Q 005967 333 AYIEVLVA 340 (667)
Q Consensus 333 v~iev~aa 340 (667)
++||+++.
T Consensus 103 vEIe~~A~ 110 (111)
T cd02198 103 VEIKVVAV 110 (111)
T ss_pred EEEEEEEE
Confidence 88988764
No 33
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=99.46 E-value=4.6e-13 Score=124.10 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccceeE
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAY 334 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v~ 334 (667)
+|+++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||+.+ +|+|++|++..|+.+ ..++
T Consensus 44 ~d~~~Q~~~~~~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~~~~~~~~~~f~~~-----~Pa~t~v~v~~L~~~-~~vE 117 (124)
T TIGR00004 44 GDIAEQAEQVLENLKAILEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYGQYFDEP-----YPARSAVQVAALPKG-VLVE 117 (124)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeChHHHHHHHHHHHHHcCCC-----CCceEEEECccCCCC-CEEE
Confidence 6899999999999999999999999999999999999999999999999999864 599999999988754 4688
Q ss_pred EEeeec
Q 005967 335 IEVLVA 340 (667)
Q Consensus 335 iev~aa 340 (667)
||+++.
T Consensus 118 Ie~vA~ 123 (124)
T TIGR00004 118 IEAIAV 123 (124)
T ss_pred EEEEEE
Confidence 888754
No 34
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.44 E-value=4.5e-13 Score=119.61 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+++++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||+.. ++|+|++|+++.|+.+ ..+
T Consensus 27 ~~~~~~Q~~~~~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~~~~~~~~----~~Pa~t~v~v~~l~~~-~~V 101 (107)
T cd00448 27 PGDIEAQTRQALENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVYDEFFGEG----PPPARTAVGVAALPPG-ALV 101 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHHHHHhCCC----CCCceEEEEeccCCCC-CEE
Confidence 47999999999999999999999999999999999999999999999999999873 3799999999998544 457
Q ss_pred EEEeee
Q 005967 334 YIEVLV 339 (667)
Q Consensus 334 ~iev~a 339 (667)
++|+++
T Consensus 102 Eie~~a 107 (107)
T cd00448 102 EIEAIA 107 (107)
T ss_pred EEEEEC
Confidence 887753
No 35
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.40 E-value=9.9e-13 Score=122.56 Aligned_cols=85 Identities=26% Similarity=0.303 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEec-Ccc-----cHHHHHHHHHHhcCCCCCCCCCCcceEEeccccc
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYIS-DMN-----EFAVANETYVKFITHEKCPCGVPSRSTIELPLLE 327 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~-Dm~-----dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~ 327 (667)
.+|+++|++++|+||+.+|+++|++++||+++++|++ |++ +|+.+|++|.+||+... +|++|+|++|+++.|+
T Consensus 36 ~~d~~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~Pa~t~v~V~~L~ 114 (126)
T cd06151 36 YGDTETQTISVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGTAE-QPNKPARSTLQVAGLV 114 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhcccc-CCCCCceEEEEeeecC
Confidence 3699999999999999999999999999999999997 666 89999999999998741 2246999999998887
Q ss_pred cccceeEEEeee
Q 005967 328 VGLGKAYIEVLV 339 (667)
Q Consensus 328 ~~~~~v~iev~a 339 (667)
.+..+++||+++
T Consensus 115 ~p~~~VEIe~iA 126 (126)
T cd06151 115 NPGWLVEIEVVA 126 (126)
T ss_pred CCCcEEEEEEEC
Confidence 655678888763
No 36
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.39 E-value=9.1e-13 Score=125.49 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcC---cEEEEEEEecCcccHHHH-------HHHHHHhcCCCCCCCCCCcceEEecc
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWG---HVLYIHLYISDMNEFAVA-------NETYVKFITHEKCPCGVPSRSTIELP 324 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~---dVv~vtvyL~Dm~dF~~v-------N~vY~~~F~~~~~~~~pPARt~V~v~ 324 (667)
+++++|++++|+||+.+|+++|++++ ||+++++|++||++|+.+ |++|.+||+.. .+|+|+||++.
T Consensus 52 ~d~~~Qt~~~~~Ni~~vL~~aG~~~~~~~dVvk~~vyl~d~~~~~~~~~~~~~~~~v~~~~f~~~----~~Part~v~V~ 127 (142)
T cd02199 52 EEGQEAARLCALNALAALKAALGDLDRVKRVVRLTGFVNSAPDFTEQPKVANGASDLLVEVFGEA----GRHARSAVGVA 127 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCEEEEEEEEechHHhhhchhhhHHHHHHHHHHcCCC----CCCceEEEEhh
Confidence 47899999999999999999999988 999999999999999875 88999999853 26999999999
Q ss_pred ccccccceeEEEeee
Q 005967 325 LLEVGLGKAYIEVLV 339 (667)
Q Consensus 325 ~L~~~~~~v~iev~a 339 (667)
.|+.+ ..++||+++
T Consensus 128 ~L~~~-~~VEIe~~A 141 (142)
T cd02199 128 SLPLN-AAVEVEAIV 141 (142)
T ss_pred hCCCC-CEEEEEEEE
Confidence 88765 568888765
No 37
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.39 E-value=3.1e-12 Score=118.13 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCC--------CCCCCCcceEEeccc
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEK--------CPCGVPSRSTIELPL 325 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~--------~~~~pPARt~V~v~~ 325 (667)
.+++++|++++|+||+.+|+++|+ +||+++++|++|+++|+.+|++|.+||+.+. ....+|+|++|+++.
T Consensus 28 ~~~~~~Q~~qal~Ni~~vL~~aG~--~dVvk~~iyl~d~~~~~~~~~v~~~~f~~~~~~~~~~~~~~~~~P~~t~v~V~~ 105 (118)
T cd06156 28 EGGITLQAVLSLQHLERVAKAMNV--QWVLAAVCYVTDESSVPIARSAWSKYCSELDLEDESRNESDDVNPPLVIVVVPE 105 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEEEEcChHHHHHHHHHHHHHhcCccccccccccccCCCCcEEEEEccc
Confidence 469999999999999999999999 9999999999999999999999999998630 000269999999999
Q ss_pred cccccceeEEEee
Q 005967 326 LEVGLGKAYIEVL 338 (667)
Q Consensus 326 L~~~~~~v~iev~ 338 (667)
|+.+ ..++|+++
T Consensus 106 L~~~-~~VEie~i 117 (118)
T cd06156 106 LPRG-ALVEWQGI 117 (118)
T ss_pred CCCC-CeEEEEEe
Confidence 9865 35777764
No 38
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.37 E-value=2.2e-12 Score=118.51 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC-----cCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccc
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFD-----WGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEV 328 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~s-----l~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~ 328 (667)
.+|+++|++++|+||+.+|+++|++ ++||+++++|++||++|+.+|++|.+||+.+ ||+ +++.+.++.+
T Consensus 31 ~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~~~~~~~~v~~~~f~~~-----~P~-t~~~~~l~~p 104 (114)
T cd06153 31 PGDVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKVYLRDREDLPAVRAILAARLGPA-----VPA-VFLQADVCRP 104 (114)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEEEccHHHHHHHHHHHHHHcCCC-----CCE-EEEEeeecCC
Confidence 4699999999999999999999999 9999999999999999999999999999864 464 7776655443
Q ss_pred ccceeEEEeee
Q 005967 329 GLGKAYIEVLV 339 (667)
Q Consensus 329 ~~~~v~iev~a 339 (667)
+ .+++||+++
T Consensus 105 ~-~lvEIe~~A 114 (114)
T cd06153 105 D-LLVEIEAVA 114 (114)
T ss_pred C-cEEEEEEEC
Confidence 3 467888753
No 39
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=99.37 E-value=3.9e-12 Score=121.03 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCCCCCCCCcccccccCCEEEEeecccCCCCCCcc---cCCC-----HHHHHHHHHHHHHHHHHHcCCCCcce--eEEEE
Q 005967 355 CWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTL---CNGG-----PTVELEQALQNSEAVAKCFNCSISTS--AIYFV 424 (667)
Q Consensus 355 ~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l---~~gd-----i~~Q~~~aL~nl~aVL~aaG~sl~dv--~V~~t 424 (667)
+-+|++.|.|-.++++|+++|+|||+|.+...... ...+ -.+.+++|.-|+-+.++.+-.+++.+ +++++
T Consensus 12 P~~~~p~g~Y~p~~~~G~ll~vSGq~p~~~g~~~~~G~vG~~~s~e~g~~AAr~~~Ln~La~lk~~~G~LdrV~~ivkl~ 91 (148)
T PF14588_consen 12 PEPPAPVGNYVPAVRVGNLLYVSGQLPRDDGKLLYTGKVGEDLSVEEGYEAARLCALNALAALKAALGDLDRVKRIVKLT 91 (148)
T ss_dssp ------SSSC-SEEEETTEEEEEEE--EETTEE-SBS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHCTSGGGECEEEEEE
T ss_pred CCCCCCCceeeeEEEECCEEEEeccCcccCCEEeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHhHEeEEEEEE
Confidence 45688899999999999999999999998642211 1222 23456778888888888876788877 79999
Q ss_pred EEEecCccchhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 005967 425 VYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 489 (667)
Q Consensus 425 vY~sd~~~~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~ 489 (667)
.|+...+++.+.+.+.....+++-++ |++..+++|+.++|..||.|+.|||++++-
T Consensus 92 g~V~s~~~F~~~p~V~ngaSdll~~v---------fGe~G~HaRsAvGv~sLP~~a~VEie~i~e 147 (148)
T PF14588_consen 92 GFVNSTPDFTEHPAVANGASDLLVEV---------FGEAGRHARSAVGVASLPLNAPVEIELIAE 147 (148)
T ss_dssp EEEEB-TT---HHHHHHHHHHHHHHH---------HGGGG-BEEEEEEESC-GGGBSEEEEEEEE
T ss_pred EEEecCCCcccCchhhhhHHHHHHHH---------hCcCCCCcccccccccCCCCCeEEEEEEEE
Confidence 99999999999999988888888643 345678999999999999999999999984
No 40
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.6e-09 Score=100.55 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+++.+|+++++.|++.+|+++|.+...++++++||.|+.+|..+|++|.+||..++ |+|+|+++..++.+. .+
T Consensus 49 ~gg~~~q~~q~l~n~~~il~~a~a~~~~~V~~~i~l~d~~~f~~vn~v~~k~~~~~~-----pars~~~v~alp~~~-~i 122 (138)
T KOG2317|consen 49 EGGIVDQTEQALLNLEEILKAAGASLDLVVKVTIFLADIIDFAAVNKVYAKYFPKPN-----PARSCVQVAALPLNG-KI 122 (138)
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCccccEEEEEEEecchhHHHHHHHHHHHcCCCC-----cchhhHHHhhcCCCC-ce
Confidence 568999999999999999999999999999999999999999999999999999886 999999988887773 45
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+++++++
T Consensus 123 e~~~i~~ 129 (138)
T KOG2317|consen 123 EIECIAA 129 (138)
T ss_pred EEeeehh
Confidence 6666654
No 41
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.09 E-value=6.7e-06 Score=90.82 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhh--hcCCEEeecC--ccCCHHHHHHHHHHCCCeEEEEEEeCCC
Q 005967 18 DMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCS--RLGLVSLAYL--WKQDQSLLLQEMITNGINAITVKVAAMG 93 (667)
Q Consensus 18 ~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~--~lgl~~l~pL--W~~~~~~ll~em~~~g~~a~ii~V~~~g 93 (667)
.+++.|.++.++. |+++|++|++.+.+++.|.++.+. ..+|..++|| |+.+++++++.+.+.|+.+.+++++..+
T Consensus 93 li~~~l~~~A~~~-G~~~Ia~G~t~~gnDqvrf~r~~~~~~~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~~pys 171 (394)
T TIGR00032 93 LIAKKLVEAAKKE-GANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSKEKPYS 171 (394)
T ss_pred HHHHHHHHHHHHc-CCCEEEECccCCcchHHHHHHHHHHhCCCCeEECchhhcCCCHHHHHHHHHHcCCCeeEecCCCCc
Confidence 4566677777776 999999999999776666677666 6689999999 9999999999999999999999999999
Q ss_pred CCCccccCcccccchHHHHHh
Q 005967 94 LEPGKHLGKEIAFLDPYLHKL 114 (667)
Q Consensus 94 L~~~~~lG~~l~~~~~~l~~l 114 (667)
+|+ .|||++++ -..|.++
T Consensus 172 ~d~-nl~G~s~e--~~~Led~ 189 (394)
T TIGR00032 172 IDE-NLWGRSIE--AGILEDP 189 (394)
T ss_pred CCH-HHcCcEec--cchhhCc
Confidence 997 69999999 4445444
No 42
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=95.25 E-value=0.043 Score=53.18 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHH------HHHHH------HhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEE
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQ------RLRVE------SVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yq------r~rve------~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~i 86 (667)
++.++.++..++ |+++|++|+..++.. ..+++ +++.+.|+..+.|||+.+..++++.+.+.|+....
T Consensus 64 ~~~~l~~~a~~~-g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~ 142 (169)
T cd01995 64 FLSIAAAYAEAL-GAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDLSKAEIVRLGGELGVPLEL 142 (169)
T ss_pred HHHHHHHHHHHC-CCCEEEEeeccCccCCCCCCCHHHHHHHHHHHHhhcCCCeEEEeCcccCCHHHHHHHHhHcCCChhh
Confidence 446777777776 999999999998731 12222 26778899999999999999999999999986666
Q ss_pred EEEeCCCCCCccccCc
Q 005967 87 VKVAAMGLEPGKHLGK 102 (667)
Q Consensus 87 i~V~~~gL~~~~~lG~ 102 (667)
.--...+ . .++.|.
T Consensus 143 s~sC~~~-~-~~~CG~ 156 (169)
T cd01995 143 TWSCYNG-G-EKHCGE 156 (169)
T ss_pred eeeccCC-C-CCCCCC
Confidence 5433344 1 246764
No 43
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=89.82 E-value=1.9 Score=41.77 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc---CcEEEEEEEecCcccHHHH-------HHHHHHhcCCCCCCCCCCcceEEecccc
Q 005967 257 LLDDLRVVLKQIESKLVRYGFDW---GHVLYIHLYISDMNEFAVA-------NETYVKFITHEKCPCGVPSRSTIELPLL 326 (667)
Q Consensus 257 i~eQt~~vl~nL~~~L~~aG~sl---~dVv~vtvyL~Dm~dF~~v-------N~vY~~~F~~~~~~~~pPARt~V~v~~L 326 (667)
-++.++.+.-|+-+.|+.+=.++ ..|++++.|+..-.+|.+- -+...+.|++. +.++|+.|++..|
T Consensus 59 g~~AAr~~~Ln~La~lk~~~G~LdrV~~ivkl~g~V~s~~~F~~~p~V~ngaSdll~~vfGe~----G~HaRsAvGv~sL 134 (148)
T PF14588_consen 59 GYEAARLCALNALAALKAALGDLDRVKRIVKLTGFVNSTPDFTEHPAVANGASDLLVEVFGEA----GRHARSAVGVASL 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSGGGECEEEEEEEEEEB-TT---HHHHHHHHHHHHHHHHGGG----G-BEEEEEEESC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHEeEEEEEEEEEecCCCcccCchhhhhHHHHHHHHhCcC----CCCcccccccccC
Confidence 34556777777777777653355 4679999999988887543 34466678865 4799999999999
Q ss_pred ccccceeEEEeee
Q 005967 327 EVGLGKAYIEVLV 339 (667)
Q Consensus 327 ~~~~~~v~iev~a 339 (667)
|.+.. ++||.++
T Consensus 135 P~~a~-VEie~i~ 146 (148)
T PF14588_consen 135 PLNAP-VEIELIA 146 (148)
T ss_dssp GGGBS-EEEEEEE
T ss_pred CCCCe-EEEEEEE
Confidence 98764 6777654
No 44
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=85.94 E-value=1.3 Score=44.92 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=49.7
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcccccHH--HHHHHHHhhhhc-CCEEeecCccC------CHHHHHHHHHHCCC
Q 005967 12 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY--QRLRVESVCSRL-GLVSLAYLWKQ------DQSLLLQEMITNGI 82 (667)
Q Consensus 12 ~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~y--qr~rve~vc~~l-gl~~l~pLW~~------~~~~ll~em~~~g~ 82 (667)
+.+|++.|..-++.+++. |++|+|||++-.+. -+.+.+++.+.. |+...+ +| |+.+-++.+++.||
T Consensus 67 s~~E~~~M~~dI~~~~~~--GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tF---HRAfD~~~d~~~al~~L~~lG~ 141 (201)
T PF03932_consen 67 SDEEIEIMKEDIRMLREL--GADGFVFGALTEDGEIDEEALEELIEAAGGMPVTF---HRAFDEVPDPEEALEQLIELGF 141 (201)
T ss_dssp -HHHHHHHHHHHHHHHHT--T-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE----GGGGGSSTHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHc--CCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEE---eCcHHHhCCHHHHHHHHHhcCC
Confidence 347899999999999887 99999999997543 344555555554 444332 43 79999999999999
Q ss_pred eEEEEE
Q 005967 83 NAITVK 88 (667)
Q Consensus 83 ~a~ii~ 88 (667)
+.++++
T Consensus 142 ~rVLTS 147 (201)
T PF03932_consen 142 DRVLTS 147 (201)
T ss_dssp SEEEES
T ss_pred CEEECC
Confidence 988875
No 45
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=82.06 E-value=2.4 Score=44.49 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccH--HHHHHHHHhhhhcC-CEEee---cCccCCHHHHHHHHHHCCCeEEE
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASD--YQRLRVESVCSRLG-LVSLA---YLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~--yqr~rve~vc~~lg-l~~l~---pLW~~~~~~ll~em~~~g~~a~i 86 (667)
.+|++-|.+-++.+|+. |++|||||++-.+ --+.+.+++.+..+ +..-+ .=.=.|+.+-|+.+++.||+-|+
T Consensus 69 ~~E~~~M~~di~~~~~~--GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL 146 (248)
T PRK11572 69 DGEFAAMLEDIATVREL--GFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence 47899999999999887 9999999999864 23344444444433 22111 00113889999999999999998
Q ss_pred EEEeCCCCCCccccCcccccchHHHHHhhhhc
Q 005967 87 VKVAAMGLEPGKHLGKEIAFLDPYLHKLKESY 118 (667)
Q Consensus 87 i~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~ 118 (667)
++ |-.+. ..+-.+.|.+|.+.+
T Consensus 147 TS----Gg~~~------a~~g~~~L~~lv~~a 168 (248)
T PRK11572 147 TS----GQQQD------AEQGLSLIMELIAAS 168 (248)
T ss_pred CC----CCCCC------HHHHHHHHHHHHHhc
Confidence 76 32221 222256777777643
No 46
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=77.25 E-value=6.2 Score=44.85 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhc---CCEEeecC-ccCCHHHHHHHHHHCCCeEEEEEEe
Q 005967 15 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL---GLVSLAYL-WKQDQSLLLQEMITNGINAITVKVA 90 (667)
Q Consensus 15 E~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~l---gl~~l~pL-W~~~~~~ll~em~~~g~~a~ii~V~ 90 (667)
..|.+.+-++.+++++++++.+.++|-.-...+.|++.+|+.+ |+.-.... ... ..++|+.|.++|+..+.+.+-
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~-~~e~l~~l~~aG~~~v~iGiE 306 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANV-DYETLKVMKENGLRLLLVGYE 306 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCC-CHHHHHHHHHcCCCEEEEcCC
Confidence 4566767777777777788888887754444566777887654 65422221 122 478999999999998888776
Q ss_pred CCC---CCCccccCcccc--cchHHHHHhhhhcCCccccCCceeEEEeecCCCCC
Q 005967 91 AMG---LEPGKHLGKEIA--FLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFV 140 (667)
Q Consensus 91 ~~g---L~~~~~lG~~l~--~~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~ 140 (667)
+.- |+ .++|..+ +..+.+..++ ++|+.+.+ +|.+.-|.-.
T Consensus 307 S~s~~~L~---~~~K~~~~~~~~~~i~~~~-~~Gi~v~~------~~IiGlPget 351 (472)
T TIGR03471 307 SGDQQILK---NIKKGLTVEIARRFTRDCH-KLGIKVHG------TFILGLPGET 351 (472)
T ss_pred CCCHHHHH---HhcCCCCHHHHHHHHHHHH-HCCCeEEE------EEEEeCCCCC
Confidence 543 21 3456554 2334444444 46776543 4555555433
No 47
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=67.63 E-value=34 Score=34.77 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=57.6
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCCEEeec------------Ccc----CCHHHHHHHHHHCCCeEEEE-EEeCCCC
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY------------LWK----QDQSLLLQEMITNGINAITV-KVAAMGL 94 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~p------------LW~----~~~~~ll~em~~~g~~a~ii-~V~~~gL 94 (667)
|+++|+.|....+. ..++++++.++|.+.+.+ =|+ .+..++++++.+.|++.+|+ .++..|.
T Consensus 94 Ga~~vvlgs~~l~d-~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~ 172 (230)
T TIGR00007 94 GVDRVIIGTAAVEN-PDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGT 172 (230)
T ss_pred CCCEEEEChHHhhC-HHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCC
Confidence 89999999766543 356788899998654322 243 35678999999999997765 4655553
Q ss_pred CCccccCcccccchHHHHHhhhhcCCccccCCce
Q 005967 95 EPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGE 128 (667)
Q Consensus 95 ~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGE 128 (667)
. -|. + .+.+.++.++.++-+...||-
T Consensus 173 ~----~g~--~--~~~i~~i~~~~~ipvia~GGi 198 (230)
T TIGR00007 173 L----SGP--N--FELTKELVKAVNVPVIASGGV 198 (230)
T ss_pred c----CCC--C--HHHHHHHHHhCCCCEEEeCCC
Confidence 2 242 3 456666666555556666653
No 48
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=67.41 E-value=7.2 Score=39.46 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=50.4
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcccccHH--HHHH---HHHhhhhcCCEEeecC-ccCCHHHHHHHHH-HCCCeE
Q 005967 12 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY--QRLR---VESVCSRLGLVSLAYL-WKQDQSLLLQEMI-TNGINA 84 (667)
Q Consensus 12 ~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~y--qr~r---ve~vc~~lgl~~l~pL-W~~~~~~ll~em~-~~g~~a 84 (667)
++||++.+..-++-+|+. |.+|.|||++-++= .|+- +-..|..|-.+-+--. --.|+...+++|+ +.||+.
T Consensus 76 sd~Em~a~~~Dv~llk~~--GAdGfVFGaLt~dgsid~~~C~si~~~~rplPVTFHRAfD~~~D~k~~lE~~l~~lGF~r 153 (255)
T KOG4013|consen 76 SDDEMAANMEDVELLKKA--GADGFVFGALTSDGSIDRTSCQSIIETARPLPVTFHRAFDVAYDWKTCLEDALLDLGFKR 153 (255)
T ss_pred chHHHHHHHHHHHHHHHc--CCCceEEeecCCCCCcCHHHHHHHHHhcCCCceeeeeehhhhcCHHHHHHHHHHHhhHHH
Confidence 346888777766666665 99999999998752 2222 2233444433322111 1237888888777 999998
Q ss_pred EEEEEeCCCCCCc
Q 005967 85 ITVKVAAMGLEPG 97 (667)
Q Consensus 85 ~ii~V~~~gL~~~ 97 (667)
+++ .|.+|+
T Consensus 154 vLt----SG~~ps 162 (255)
T KOG4013|consen 154 VLT----SGQEPS 162 (255)
T ss_pred Hhh----cCCCcc
Confidence 765 566664
No 49
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=58.17 E-value=61 Score=32.86 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=46.4
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCCEEeec-----------Cc----cCCHHHHHHHHHHCCCeEEEEE-EeCCCCC
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY-----------LW----KQDQSLLLQEMITNGINAITVK-VAAMGLE 95 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~p-----------LW----~~~~~~ll~em~~~g~~a~ii~-V~~~gL~ 95 (667)
|+++|+.|.-+.+- ...+++++++.+=....+ =| ..+..++.+++.+.|.+.+++- ++..|-
T Consensus 96 Ga~~vilg~~~l~~-~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~- 173 (233)
T PRK00748 96 GVSRVIIGTAAVKN-PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGT- 173 (233)
T ss_pred CCCEEEECchHHhC-HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCC-
Confidence 67777777766432 234455555432111111 23 3356788888888888865553 665552
Q ss_pred CccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 96 PGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 96 ~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
.-| .+ .+.+.++.+...+-+..+||
T Consensus 174 ---~~G--~d--~~~i~~l~~~~~ipvia~GG 198 (233)
T PRK00748 174 ---LSG--PN--VEATRELAAAVPIPVIASGG 198 (233)
T ss_pred ---cCC--CC--HHHHHHHHHhCCCCEEEeCC
Confidence 234 33 44555555544455555555
No 50
>PRK13820 argininosuccinate synthase; Provisional
Probab=56.48 E-value=26 Score=39.31 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhCCCceEEEEccccc-HHHHHHHHHhhhhcCCEEeecC--ccCCHHHHHHHHHHCCCeEEEEEEeCCCC
Q 005967 18 DMYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRLGLVSLAYL--WKQDQSLLLQEMITNGINAITVKVAAMGL 94 (667)
Q Consensus 18 ~l~~~L~~~k~~~p~v~~v~~GaI~s-~yqr~rve~vc~~lgl~~l~pL--W~~~~~~ll~em~~~g~~a~ii~V~~~gL 94 (667)
-+++.|.++.+++ |+++|+.|.-.. +.| .|.|..+..++|..++|+ |+..++++++-.-+.|+.....+=..+-.
T Consensus 96 ~i~~~l~e~A~e~-G~~~IA~G~t~~gnDq-~rfe~~~~a~~l~viaP~re~~ltK~ei~~ya~~~gip~~~~~~~~yS~ 173 (394)
T PRK13820 96 LIAEKIVEVAEKE-GASAIAHGCTGKGNDQ-LRFEAVFRASDLEVIAPIRELNLTREWEIEYAKEKGIPVPVGKEKPWSI 173 (394)
T ss_pred HHHHHHHHHHHHc-CCCEEEECCCCCcchH-HHHHHhhHhhcCeeeCchhccCCCHHHHHHHHHHcCCCCCcCCCCCccc
Confidence 3566777777777 999999999765 456 456777777799999996 66788888888888888775443333445
Q ss_pred CCccccCcccc
Q 005967 95 EPGKHLGKEIA 105 (667)
Q Consensus 95 ~~~~~lG~~l~ 105 (667)
|+ ..||+++.
T Consensus 174 d~-nlw~~s~e 183 (394)
T PRK13820 174 DE-NLWSRSIE 183 (394)
T ss_pred cc-cccccccc
Confidence 54 35555553
No 51
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=54.73 E-value=10 Score=32.68 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCe
Q 005967 20 YILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 83 (667)
Q Consensus 20 ~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~ 83 (667)
+.++...+.. +.+.+.+|+|+..|+ .+|+..|+.++.+ +-=.+++.++-..|+=
T Consensus 2 ~Al~~~~~~~--~~~~~~~~~vy~~Y~-----~lc~~~~~~pls~---~r~~~~l~eL~~~gli 55 (85)
T PF09079_consen 2 LALAALLKEG--GKEEVTTGEVYEVYE-----ELCESLGVDPLSY---RRFSDYLSELEMLGLI 55 (85)
T ss_dssp HHHHHHHHHC--TSSSEEHHHHHHHHH-----HHHHHTTS----H---HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhC--CCCceeHHHHHHHHH-----HHHHHcCCCCCCH---HHHHHHHHHHHhCCCe
Confidence 3444444443 467789999999998 8899999998876 5566889999998874
No 52
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=54.33 E-value=27 Score=36.32 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccH--HHHHHHHHh---hhhcCCEEeecC-ccCCHHHHHHHHHHCCCeEEE
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASD--YQRLRVESV---CSRLGLVSLAYL-WKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~--yqr~rve~v---c~~lgl~~l~pL-W~~~~~~ll~em~~~g~~a~i 86 (667)
.+|++-|.+=+..+|+. |+.|||+|++-.+ --..+.|.+ +..||++-+--+ --.|+.+-|+.+++.|++=++
T Consensus 69 ~~E~~iM~~DI~~~~~l--G~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RIL 146 (241)
T COG3142 69 DDELEIMLEDIRLAREL--GVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERIL 146 (241)
T ss_pred hHHHHHHHHHHHHHHHc--CCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEe
Confidence 36888888888888777 9999999999853 112334443 444555533221 114899999999999999888
Q ss_pred EE
Q 005967 87 VK 88 (667)
Q Consensus 87 i~ 88 (667)
++
T Consensus 147 Ts 148 (241)
T COG3142 147 TS 148 (241)
T ss_pred cC
Confidence 74
No 53
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=52.96 E-value=9.6 Score=32.59 Aligned_cols=55 Identities=25% Similarity=0.394 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCe
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 83 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~ 83 (667)
|..++...++. |-+.+.+|+|+..|+ ++|++.|+.++.+ +-=.+++.++-..|+=
T Consensus 8 L~Al~~~~~~~--~~~~~~~~~vy~~Y~-----~~c~~~~~~~l~~---~~~~~~l~~L~~~gli 62 (87)
T cd08768 8 LLALLLLFKRG--GEEEATTGEVYEVYE-----ELCEEIGVDPLTQ---RRISDLLSELEMLGLL 62 (87)
T ss_pred HHHHHHHHhcC--CCCCccHHHHHHHHH-----HHHHHcCCCCCcH---HHHHHHHHHHHHcCCe
Confidence 33444444332 456689999999998 8899998776554 5556788888888764
No 54
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=51.52 E-value=1.3e+02 Score=30.40 Aligned_cols=87 Identities=22% Similarity=0.241 Sum_probs=46.9
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCCE------------EeecCc----cCCHHHHHHHHHHCCCeEEEEE-EeCCCC
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGLV------------SLAYLW----KQDQSLLLQEMITNGINAITVK-VAAMGL 94 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl~------------~l~pLW----~~~~~~ll~em~~~g~~a~ii~-V~~~gL 94 (667)
|++.|+.|..... ...+++++.++.|-+ ....-| ..+..++++.+.+.|.+.+++- +...|-
T Consensus 95 Gad~vvigs~~l~-dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~ 173 (234)
T cd04732 95 GVSRVIIGTAAVK-NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGT 173 (234)
T ss_pred CCCEEEECchHHh-ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCc
Confidence 6777777766643 244566666666641 111223 3356677777777777777663 444442
Q ss_pred CCccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 95 EPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 95 ~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
.-| .+ .+.+.++.+...+-+...||
T Consensus 174 ----~~g--~~--~~~i~~i~~~~~ipvi~~GG 198 (234)
T cd04732 174 ----LSG--PN--FELYKELAAATGIPVIASGG 198 (234)
T ss_pred ----cCC--CC--HHHHHHHHHhcCCCEEEecC
Confidence 223 22 34555555544444455444
No 55
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=50.35 E-value=71 Score=31.86 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCC---------------------HHH
Q 005967 14 DEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQD---------------------QSL 72 (667)
Q Consensus 14 dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~---------------------~~~ 72 (667)
|-.+.+.+-+.++|++ |+.-++ .|+--+.||..++.+||+--+.+-=.-- -.+
T Consensus 46 ~~tpe~~~W~~e~k~~--gi~v~v----vSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDq 119 (175)
T COG2179 46 DATPELRAWLAELKEA--GIKVVV----VSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQ 119 (175)
T ss_pred CCCHHHHHHHHHHHhc--CCEEEE----EeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcch
Confidence 4456788888888888 787775 4777788999999999987554432211 134
Q ss_pred HHHHHH---HCCCeEEEEE--EeCCCCCCccccCcccccchHHHHHhhhhcC
Q 005967 73 LLQEMI---TNGINAITVK--VAAMGLEPGKHLGKEIAFLDPYLHKLKESYG 119 (667)
Q Consensus 73 ll~em~---~~g~~a~ii~--V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g 119 (667)
|+.+.. .+|+..|+|+ ++..|+. .+++|.+. ...+.+|.++||
T Consensus 120 L~TDVlggnr~G~~tIlV~Pl~~~d~~~--t~~nR~~E--r~v~~~l~~k~g 167 (175)
T COG2179 120 LFTDVLGGNRAGMRTILVEPLVAPDGWI--TKINRWRE--RRVLKKLGKKYG 167 (175)
T ss_pred hhhhhhcccccCcEEEEEEEeccccchh--hhhhHHHH--HHHHHHHHHhcC
Confidence 556655 5799999996 5666654 47778777 678888888876
No 56
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.22 E-value=61 Score=36.54 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=48.8
Q ss_pred CceEEE--EcccccHHHHHHHHHhhhhc-CCEEeecCc--cCCHHHHHHHHHHCCCeEEEEEEeCCCCCCccccCccccc
Q 005967 32 SVTAVS--SGAIASDYQRLRVESVCSRL-GLVSLAYLW--KQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAF 106 (667)
Q Consensus 32 ~v~~v~--~GaI~s~yqr~rve~vc~~l-gl~~l~pLW--~~~~~~ll~em~~~g~~a~ii~V~~~gL~~~~~lG~~l~~ 106 (667)
|++.|+ +.+=.+.++...++.+=... ++ +|+ .....+-...++++|++++.+.+-.. +.+-+|.++.
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~----~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G----s~c~tr~~~g 236 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNL----DLIAGNIVTKEAALDLISVGADCLKVGIGPG----SICTTRIVAG 236 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCC----cEEEEecCCHHHHHHHHHcCCCEEEECCCCC----cCCcceeecC
Confidence 788888 44434666666666654443 22 233 24677788899999999988532221 1133444332
Q ss_pred -------chHHHHHhhhhcCCccccCCc
Q 005967 107 -------LDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 107 -------~~~~l~~l~~~~g~~~cGEgG 127 (667)
....+.++.+++++.+.-|||
T Consensus 237 ~g~p~ltai~~v~~~~~~~~vpVIAdGG 264 (404)
T PRK06843 237 VGVPQITAICDVYEVCKNTNICIIADGG 264 (404)
T ss_pred CCCChHHHHHHHHHHHhhcCCeEEEeCC
Confidence 122234444445666666666
No 57
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=42.58 E-value=49 Score=36.71 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhhcC-CCcccceEEEEEe--ecCCCccHhHHHHHHHHHHHHHHhhCCCccccCcceeEEEeecCcCcc
Q 005967 576 RFCIYLLNKIIVENN-FSWEDVTNLRLYF--PTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVPVLGAGRS 651 (667)
Q Consensus 576 ~~~~~~l~k~~~~~~-~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (667)
.|=.||..-.-.... .--|.=+|+=+|| |+++++..-+|. +|++|++. +|||||+|=--+
T Consensus 112 q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-----~Mk~ls~~-----------vNlIPVI~KaD~ 174 (373)
T COG5019 112 QFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-----AMKRLSKR-----------VNLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-----HHHHHhcc-----------cCeeeeeecccc
Confidence 344455543333332 2346668999999 779998887775 45667654 799999975433
No 58
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=40.80 E-value=65 Score=36.10 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhCCCceEEEEccccc-HHHHHHHHHhhhhc--CCEEeecCccC---CHHHHHHHHHHCCCeEEEEEEeCC
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRL--GLVSLAYLWKQ---DQSLLLQEMITNGINAITVKVAAM 92 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s-~yqr~rve~vc~~l--gl~~l~pLW~~---~~~~ll~em~~~g~~a~ii~V~~~ 92 (667)
++..|.++.+++ |+++|+.|.-.. +.|+ |.+..+..+ .+...+||-.. .+++++.-..+.|+..-..+-..+
T Consensus 94 i~~~l~~~A~~~-Ga~~VA~G~t~~gnDq~-rf~~~~~al~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~py 171 (385)
T cd01999 94 IAKALVEVAKEE-GADAVAHGCTGKGNDQV-RFELAFYALNPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPY 171 (385)
T ss_pred HHHHHHHHHHHc-CCCEEEeCCCCCCCcHH-HHHHHHHhhCCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCC
Confidence 455566666666 999999999874 4554 556666555 58899998766 899999988899987654443445
Q ss_pred CCCCccccCcccc
Q 005967 93 GLEPGKHLGKEIA 105 (667)
Q Consensus 93 gL~~~~~lG~~l~ 105 (667)
-.|. ..||+++.
T Consensus 172 S~d~-nl~~~s~e 183 (385)
T cd01999 172 SIDE-NLWGRSIE 183 (385)
T ss_pred ccCC-Ccceeecc
Confidence 5565 36666553
No 59
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.84 E-value=42 Score=38.62 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhc---C-CEEeecCccC--------CHHHHHHHHHHCCC
Q 005967 15 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL---G-LVSLAYLWKQ--------DQSLLLQEMITNGI 82 (667)
Q Consensus 15 E~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~l---g-l~~l~pLW~~--------~~~~ll~em~~~g~ 82 (667)
..|.+.+-++.+.++| |+..+.+.|-.-...+.|+..+|+.+ | +. --|.- ..+++|+.|.++|+
T Consensus 223 s~e~Vv~Ei~~l~~~~-gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~---i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTH-GVGFFILADEEPTINRKKFQEFCEEIIARNPIS---VTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecccccCHHHHHHHHHHHHhcCCCC---eEEEEecccccccCCHHHHHHHHHhCC
Confidence 4556666666666677 89988887754445667888888865 2 22 11321 14689999999999
Q ss_pred eEEEEEEeCCCCCCccccCccccc--chHHHHHhhhhcCCccccCCceeEEEeecCCCC
Q 005967 83 NAITVKVAAMGLEPGKHLGKEIAF--LDPYLHKLKESYGINVCGEGGEYETLTLDCPLF 139 (667)
Q Consensus 83 ~a~ii~V~~~gL~~~~~lG~~l~~--~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF 139 (667)
..+.+.+-+.-=.--+.++|..+. ..+.+..+. ++|+.+.+ .|.+.-|.-
T Consensus 299 ~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~-~~Gi~~~~------~~I~G~P~e 350 (497)
T TIGR02026 299 VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLR-QHNILSEA------QFITGFENE 350 (497)
T ss_pred cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHH-HCCCcEEE------EEEEECCCC
Confidence 998888776430000245666552 344444444 46776532 455655643
No 60
>PRK09061 D-glutamate deacylase; Validated
Probab=39.01 E-value=1.7e+02 Score=33.78 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=77.3
Q ss_pred cCCcchHHHHHHHHHHHHhhCCCceEEEEcccc----cHHHHHHHHHhhhhcCCEEeecCccCC------H----HHHHH
Q 005967 10 MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA----SDYQRLRVESVCSRLGLVSLAYLWKQD------Q----SLLLQ 75 (667)
Q Consensus 10 ~~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~----s~yqr~rve~vc~~lgl~~l~pLW~~~------~----~~ll~ 75 (667)
..+++|++.|..++++..++ |+.++.+|..+ +.++-.++-+.+.+.|.....=+...+ . .++++
T Consensus 162 ~~t~~el~~m~~ll~~al~~--Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~ 239 (509)
T PRK09061 162 AATPAELAEILELLEQGLDE--GALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIA 239 (509)
T ss_pred CCCHHHHHHHHHHHHHHHHC--CCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHH
Confidence 34467899999999988888 99999887432 677888888999999988766555432 1 23344
Q ss_pred HHHHCCCeEEEEEEeCCCCCCccccCcccccchHHHHHhhhhcCCccccCCceeE
Q 005967 76 EMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYE 130 (667)
Q Consensus 76 em~~~g~~a~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEye 130 (667)
-....|.+..|+-+.+.|-.. ..+..+.+.+..+ .|+++..|--=|+
T Consensus 240 lA~~~G~rv~IsHlss~g~~~-------~~~~le~I~~Ar~-~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 240 AAAETGAHMHICHVNSTSLRD-------IDRCLALVEKAQA-QGLDVTTEAYPYG 286 (509)
T ss_pred HHHHhCCCEEEEeeccCCccc-------HHHHHHHHHHHHH-cCCcEEEEecCcc
Confidence 444689999998888777421 2223445555554 5889888877676
No 61
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=38.91 E-value=1.7e+02 Score=28.27 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhc---------------CCEEeecCccCCHHHHHHHHHHCCCe
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL---------------GLVSLAYLWKQDQSLLLQEMITNGIN 83 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~l---------------gl~~l~pLW~~~~~~ll~em~~~g~~ 83 (667)
.+.+|.++..++ |.+.|++|.-..+...+...+++..- +...+.||......|+..-.-..|+.
T Consensus 84 r~~~l~~~a~~~-~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~~k~eI~~~~~~~~l~ 162 (185)
T cd01992 84 RYDFFAEIAKEH-GADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGITRAEIEAYLRENGLP 162 (185)
T ss_pred HHHHHHHHHHHc-CCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCCCHHHHHHHHHHcCCC
Confidence 345666666676 89999999998887776666655433 34455666666666655555555554
Q ss_pred EE
Q 005967 84 AI 85 (667)
Q Consensus 84 a~ 85 (667)
..
T Consensus 163 ~~ 164 (185)
T cd01992 163 WW 164 (185)
T ss_pred eE
Confidence 33
No 62
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=37.81 E-value=82 Score=29.65 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHC-CCeEEEEEEeCCCCCCccccCcccccchHHHHHhhhhcCCcc
Q 005967 67 KQDQSLLLQEMITN-GINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINV 122 (667)
Q Consensus 67 ~~~~~~ll~em~~~-g~~a~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~ 122 (667)
.|++-.-|-+.+.. .++++|+. .|| -|||...+...++..|.+++|+.+
T Consensus 53 ~Rp~l~~ll~~~~~g~vd~vvv~----~ld---Rl~R~~~d~~~~~~~l~~~~gv~l 102 (140)
T cd03770 53 DRPGFNRMIEDIEAGKIDIVIVK----DMS---RLGRNYLKVGLYMEILFPKKGVRF 102 (140)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEe----ccc---hhccCHHHHHHHHHHHHhhcCcEE
Confidence 34544333344444 47766663 244 388887665667777777677744
No 63
>PRK04527 argininosuccinate synthase; Provisional
Probab=36.08 E-value=53 Score=37.02 Aligned_cols=83 Identities=10% Similarity=0.126 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCceEEEEccc--ccHHHHHHHHHhhhhcCCEEeecC--ccC----CHHHHHHHHHHCCCeEEEEEEe
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAI--ASDYQRLRVESVCSRLGLVSLAYL--WKQ----DQSLLLQEMITNGINAITVKVA 90 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI--~s~yqr~rve~vc~~lgl~~l~pL--W~~----~~~~ll~em~~~g~~a~ii~V~ 90 (667)
++..|.++.+++ |+++|+.|.- ..+..|-|.--.+.. .+..++|| |+. .+++++.-..+.|+..-..+-
T Consensus 97 ~~~~l~e~A~~~-G~~~IA~G~tgkgnDq~rfrpg~~Al~-el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~~~- 173 (400)
T PRK04527 97 IVDAALKRAEEL-GTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQK- 173 (400)
T ss_pred HHHHHHHHHHHC-CCCEEEecCcCCCCchhhccHHHHHhh-cCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCCCC-
Confidence 455666666666 9999999998 455555444433333 66677775 665 678888888899987744322
Q ss_pred CCCCCCccccCcccc
Q 005967 91 AMGLEPGKHLGKEIA 105 (667)
Q Consensus 91 ~~gL~~~~~lG~~l~ 105 (667)
.+-.|+ ..||+++.
T Consensus 174 ~yS~D~-Nlw~~s~E 187 (400)
T PRK04527 174 AYTINE-NLLGVTMS 187 (400)
T ss_pred Cccccc-chhheecc
Confidence 255665 46666664
No 64
>PRK14561 hypothetical protein; Provisional
Probab=34.47 E-value=74 Score=31.89 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCceEEEEcccccH----HHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHH
Q 005967 22 LLNEVKRQIPSVTAVSSGAIASD----YQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMI 78 (667)
Q Consensus 22 ~L~~~k~~~p~v~~v~~GaI~s~----yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~ 78 (667)
+|..+. + |++.|+.|-...+ ..|..++..+++.|++...|||+.+..++.+---
T Consensus 87 ~l~~~a--~-g~~~Ia~G~n~DD~~et~~r~~~~a~~~~~gi~iirPL~~~~K~eI~~la~ 144 (194)
T PRK14561 87 ALEALA--E-EYDVIADGTRRDDRVPKLSRSEIQSLEDRKGVQYIRPLLGFGRKTIDRLVE 144 (194)
T ss_pred HHHHHH--c-CCCEEEEEecCCCcchhccHHHHhhhhcCCCcEEEeeCCCCCHHHHHHHHH
Confidence 455544 3 7888888877654 4677888888888999999999988877654433
No 65
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=34.41 E-value=80 Score=25.85 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeec
Q 005967 17 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY 64 (667)
Q Consensus 17 e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~p 64 (667)
+.+++.|..++..- .-+.+.|=.-++.+||..|-.+|+.+||.+-+.
T Consensus 2 ~~~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~ 48 (60)
T cd02641 2 KHLKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHEST 48 (60)
T ss_pred hhHHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceEee
Confidence 34666777777652 346677777789999999999999999998754
No 66
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.71 E-value=72 Score=35.51 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhhcCCCcccceEEEEEe--ecCCCccHhHHHHHHHHHHHHHHhhCCCccccCcceeEEEeecCcCcc
Q 005967 575 SRFCIYLLNKIIVENNFSWEDVTNLRLYF--PTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVPVLGAGRS 651 (667)
Q Consensus 575 ~~~~~~~l~k~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (667)
+.|=.||.+-.-....---|+=+|+=+|| |+++++..-++.. +++|+. .+|||||+|=-.+
T Consensus 108 ~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~-----Mk~l~~-----------~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 108 SQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF-----MKKLSK-----------KVNLIPVIAKADT 170 (366)
T ss_pred HHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHH-----HHHHhc-----------cccccceeecccc
Confidence 34444555432222222246678999999 6688777766654 455554 3899999985443
No 67
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.46 E-value=3.5e+02 Score=28.00 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccc--cHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEe
Q 005967 16 VEDMYILLNEVKRQIPSVTAVSSGAIA--SDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVA 90 (667)
Q Consensus 16 ~e~l~~~L~~~k~~~p~v~~v~~GaI~--s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~ 90 (667)
+.+..+.++++++. |++++++=|+- +..+..+.-+.|.++|+++..-+=-..+.+-++.+++..=..++..|.
T Consensus 87 ~~~~~~~i~~~~~~--Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 87 VDSLDNFLNMARDV--GADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred hhCHHHHHHHHHHc--CCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 33444555666555 88888887643 234455666778888888777665555567777777766566655554
No 68
>PRK08349 hypothetical protein; Validated
Probab=30.26 E-value=2.1e+02 Score=28.51 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhh---cCCEEeecCccCCHHHHHHHHHHCCCe
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR---LGLVSLAYLWKQDQSLLLQEMITNGIN 83 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~---lgl~~l~pLW~~~~~~ll~em~~~g~~ 83 (667)
++.++.++..++ |++.|++|+=..+.--.-+.++... -++..+.||++.+..++++--...|.-
T Consensus 93 ~~~~a~~~A~~~-g~~~I~tG~~~~d~a~~~l~nl~~~~~~~~i~i~rPL~~~~K~eI~~~a~~~g~~ 159 (198)
T PRK08349 93 MYRKAERIAHEI-GASAIITGDSLGQVASQTLDNLMVISTATDLPVLRPLIGLDKEEIVKIAKEIGTF 159 (198)
T ss_pred HHHHHHHHHHHc-CCCEEEEecCCchHHHHHHHHHhccccccCCeEEcCCCCCCHHHHHHHHHHcCCh
Confidence 456677777777 9999999975544332333343332 357889999999999999998888854
No 69
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=29.27 E-value=1.5e+02 Score=34.02 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=54.9
Q ss_pred HHHHHHHHhhCCCceEEEEcc--cccHHHHHHHHHhhhhc-CCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCCCC
Q 005967 20 YILLNEVKRQIPSVTAVSSGA--IASDYQRLRVESVCSRL-GLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEP 96 (667)
Q Consensus 20 ~~~L~~~k~~~p~v~~v~~Ga--I~s~yqr~rve~vc~~l-gl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL~~ 96 (667)
++.++.+.+. |++.++.=+ =-+.++...++.+..++ ++.... =.--..+-...++++|.+++.+.+- .|
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~~aGad~i~vg~g-~g--- 301 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALIEAGADAVKVGIG-PG--- 301 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHHHcCCCEEEECCC-CC---
Confidence 3344444444 788665311 11456777778887776 433222 1234566778888999999986442 11
Q ss_pred ccccCcccccc-h---HHHHHh---hhhcCCccccCCc
Q 005967 97 GKHLGKEIAFL-D---PYLHKL---KESYGINVCGEGG 127 (667)
Q Consensus 97 ~~~lG~~l~~~-~---~~l~~l---~~~~g~~~cGEgG 127 (667)
+.+.+|.++.. . ..|.++ ..++|+.+..+||
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGG 339 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGG 339 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 23555655431 2 233222 2245666666666
No 70
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=29.19 E-value=1.2e+02 Score=32.45 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHhhhc-----CCCcccceEEEEEe--ecCCCccHhHHHHHHHHHHHHHHhhCCCccccCcceeEEEe
Q 005967 572 GRLSRFCIYLLNKIIVEN-----NFSWEDVTNLRLYF--PTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVP 644 (667)
Q Consensus 572 ~~~~~~~~~~l~k~~~~~-----~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (667)
+.|..|+.-..++.+.+. .-.-|.-+|+=+|| |+++++...+|. ++++|++. .|+||
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-----~mk~Ls~~-----------vNvIP 147 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-----FMKRLSKR-----------VNVIP 147 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-----HHHHHTTT-----------SEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-----HHHHhccc-----------ccEEe
Confidence 344444444444443322 22457788999999 557778777774 55777654 69999
Q ss_pred ecCcCcc
Q 005967 645 VLGAGRS 651 (667)
Q Consensus 645 ~~~~~~~ 651 (667)
|++=+-+
T Consensus 148 vIaKaD~ 154 (281)
T PF00735_consen 148 VIAKADT 154 (281)
T ss_dssp EESTGGG
T ss_pred EEecccc
Confidence 9987654
No 71
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=29.04 E-value=32 Score=38.50 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCceEEEEccccc-HHHHHHHHHhhhhcC--CEEeecC--ccCCHHHHHHHHHHCCCeEEEEEEeCCCC
Q 005967 20 YILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRLG--LVSLAYL--WKQDQSLLLQEMITNGINAITVKVAAMGL 94 (667)
Q Consensus 20 ~~~L~~~k~~~p~v~~v~~GaI~s-~yqr~rve~vc~~lg--l~~l~pL--W~~~~~~ll~em~~~g~~a~ii~V~~~gL 94 (667)
.+.+-++.++. |+++|+-|+--. +.| .|+|..+..|+ |+.++|. |...+++.+.-+-+.|+.+-..+-..+-.
T Consensus 94 a~~~v~~A~~~-ga~~vaHG~TgkGNDq-vRFe~~~~al~P~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~~~~~yS~ 171 (388)
T PF00764_consen 94 AKKLVEVAREE-GADAVAHGCTGKGNDQ-VRFELSIRALAPELKVIAPWRDWEFSREEEIEYAKKHGIPVPVTKKKPYSI 171 (388)
T ss_dssp HHHHHHHHHHH-T-SEEE----TTSSHH-HHHHHHHHHHSTTSEEE-GGGHHHHHHHHHHHHHHHTT----SS---SSEE
T ss_pred HHHHHHHHHHc-CCeEEeccCCcCCCch-hHHHHHHHHhCcCCcEecccchhhhhHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence 33444455554 999999999774 566 67799999998 9999996 66678888998999999988776666677
Q ss_pred CCccccCcccc
Q 005967 95 EPGKHLGKEIA 105 (667)
Q Consensus 95 ~~~~~lG~~l~ 105 (667)
|+ ..+|+++.
T Consensus 172 D~-Nlwg~s~E 181 (388)
T PF00764_consen 172 DE-NLWGRSIE 181 (388)
T ss_dssp EE-ESSEEEEE
T ss_pred cc-cccccccc
Confidence 76 47887776
No 72
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=28.90 E-value=61 Score=36.24 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=64.1
Q ss_pred HHHHHHhhCCCceEEEEccccc-HHHHHHHHHhhh--hcCCEEeecC--ccCCHHHHHHHHHHCCCeEEEEEEeCCCCCC
Q 005967 22 LLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCS--RLGLVSLAYL--WKQDQSLLLQEMITNGINAITVKVAAMGLEP 96 (667)
Q Consensus 22 ~L~~~k~~~p~v~~v~~GaI~s-~yqr~rve~vc~--~lgl~~l~pL--W~~~~~~ll~em~~~g~~a~ii~V~~~gL~~ 96 (667)
.|-++.++. |+++|+.|.--- +.| .|+|.... .-.|+.++|. |...++++++=+.+.|+..-..+=..+-.|+
T Consensus 103 ~lVe~A~k~-ga~avaHGcTGKGNDQ-vRFe~~~~al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~~~kpySiD~ 180 (403)
T COG0137 103 KLVEAAKKE-GADAVAHGCTGKGNDQ-VRFELAILALNPDLKIIAPWREWNLTREEEIEYAEEHGIPVKATKEKPYSIDE 180 (403)
T ss_pred HHHHHHHHc-CCCEEEecCCCCCCce-eeeeeehhhhCCCcEEEeehhhhccChHHHHHHHHHcCCCccccCCCCcccch
Confidence 445556666 999999998874 566 66777766 4489999994 8888999999999999998888656777886
Q ss_pred ccccCcccc
Q 005967 97 GKHLGKEIA 105 (667)
Q Consensus 97 ~~~lG~~l~ 105 (667)
..||+++.
T Consensus 181 -Nlwg~S~E 188 (403)
T COG0137 181 -NLWGRSIE 188 (403)
T ss_pred -hhhccccc
Confidence 58888876
No 73
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=28.84 E-value=2.1e+02 Score=27.77 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhh---hhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEe
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVC---SRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVA 90 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc---~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~ 90 (667)
++..+.++.+++ |++.|++|.-..++.-....++. ..-++..+.||=+.+..++.+--...|+-.....+-
T Consensus 91 ~~~~~~~~A~~~-g~~~I~~G~~~~D~~~~~~~~l~~~~~~~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~~~~~ 164 (177)
T cd01712 91 MYRIAEKLAEEL-GADAIVTGESLGQVASQTLENLLVISSGTDLPILRPLIGFDKEEIIGIARRIGTYDISIRPR 164 (177)
T ss_pred HHHHHHHHHHHc-CCCEEEEccCcccchHHHHHhhhhcccCCCCeEECCCCCCCHHHHHHHHHHcCCcceeccCc
Confidence 444566666666 99999999988765444444444 445688888988888888888777777665555433
No 74
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=28.81 E-value=68 Score=27.64 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=29.7
Q ss_pred CCcchHHHHHHHHHHHHhhCCCceEEEEcccccH
Q 005967 11 TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASD 44 (667)
Q Consensus 11 ~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~ 44 (667)
++.++.+.+.+.|++++.+.|+|..+.+|-..+.
T Consensus 13 ~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~ 46 (97)
T PF07876_consen 13 ATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSP 46 (97)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTECEEEEEEESST
T ss_pred CCHHHHHHHHHHHHhcccCCCceEEEEEEcccCc
Confidence 4557888999999999999999999999987764
No 75
>PRK05370 argininosuccinate synthase; Validated
Probab=28.54 E-value=1.3e+02 Score=34.39 Aligned_cols=84 Identities=12% Similarity=0.015 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCCCceEEEEcccc-cHHHHHHHHHhhhhc--CCEEeecC--ccC-----CHHHHHHHHHHCCCeEEEEE
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIA-SDYQRLRVESVCSRL--GLVSLAYL--WKQ-----DQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~-s~yqr~rve~vc~~l--gl~~l~pL--W~~-----~~~~ll~em~~~g~~a~ii~ 88 (667)
+.+.|-++.++. |+++|+.|+-- =+.| .|+|..+..| .|+.++|. |.. .+++.+.-..+.|+.+-..+
T Consensus 110 ia~~lv~~A~~~-ga~aIAHG~TGKGNDQ-vRFE~~~~aL~P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~~ 187 (447)
T PRK05370 110 TGTMLVAAMKED-GVNIWGDGSTYKGNDI-ERFYRYGLLTNPELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMSV 187 (447)
T ss_pred HHHHHHHHHHHh-CCcEEEEcCCCCCCch-HHHHHHHHHhCCCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCccC
Confidence 344556666665 99999999985 4677 6779888888 78999994 655 78999999999999987665
Q ss_pred EeCCCCCCccccCcccc
Q 005967 89 VAAMGLEPGKHLGKEIA 105 (667)
Q Consensus 89 V~~~gL~~~~~lG~~l~ 105 (667)
-..+-.|+ ..||+++.
T Consensus 188 ~~~ySiD~-NLwg~S~E 203 (447)
T PRK05370 188 EKAYSTDS-NMLGATHE 203 (447)
T ss_pred CCCccCcc-Chheeeec
Confidence 55677776 48887775
No 76
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.71 E-value=3.6e+02 Score=28.19 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred EEeecCcc----CCHHHHHHHHHHCCCeEEEE-EEeCCCCCCccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 60 VSLAYLWK----QDQSLLLQEMITNGINAITV-KVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 60 ~~l~pLW~----~~~~~ll~em~~~g~~a~ii-~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
+.....|+ .+..++++++.+.|+..+|+ .++..|.. -|. + .+.+.++.+...+.+..-||
T Consensus 140 ~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~----~G~--d--~~~i~~~~~~~~ipvIasGG 204 (258)
T PRK01033 140 DVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTM----KGY--D--LELLKSFRNALKIPLIALGG 204 (258)
T ss_pred EEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCc----CCC--C--HHHHHHHHhhCCCCEEEeCC
Confidence 34445553 34567777777777765555 34444422 232 2 34555555444444444444
No 77
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=27.55 E-value=1.8e+02 Score=29.53 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccH--HHHHH-HHHhhhhcCCEEeecCccCCHHHHHHHHHHCC
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASD--YQRLR-VESVCSRLGLVSLAYLWKQDQSLLLQEMITNG 81 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~--yqr~r-ve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g 81 (667)
|++.-.++.+++ |++++++|+.+-+ =|... +.-+-...++-.|-||=+.|-+|+++-.-.-|
T Consensus 96 M~r~A~~ia~~~-ga~~IvTGEsLGQvaSQTl~nL~~i~~~~~~pIlRPLig~dK~EIi~~Ar~Ig 160 (197)
T PF02568_consen 96 MYRIAEEIAEEE-GADAIVTGESLGQVASQTLENLRVIESASDLPILRPLIGFDKEEIIEIARKIG 160 (197)
T ss_dssp HHHHHHHHHHHT-T--EEE----SSSTTS--HHHHHHHGGG--S-EE-TTTT--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCCEEEeCchhHHHHhhhHHHHhhhhcccCCceeCCcCCCCHHHHHHHHHHhC
Confidence 445556677777 9999999998832 13222 12222334889999999999999988877776
No 78
>PRK15108 biotin synthase; Provisional
Probab=27.35 E-value=4.4e+02 Score=28.91 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEc----cc-c--cHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEE
Q 005967 16 VEDMYILLNEVKRQIPSVTAVSSG----AI-A--SDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 16 ~e~l~~~L~~~k~~~p~v~~v~~G----aI-~--s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~ 88 (667)
.|++.+..+++++. |++.++.| +- . -+|-..-++.+ .+.|+....-+=..+ .+.+++|.++|++.+-+.
T Consensus 78 ~eEI~~~a~~~~~~--G~~~i~i~~~g~~p~~~~~e~i~~~i~~i-k~~~i~v~~s~G~ls-~e~l~~LkeAGld~~n~~ 153 (345)
T PRK15108 78 VEQVLESARKAKAA--GSTRFCMGAAWKNPHERDMPYLEQMVQGV-KAMGLETCMTLGTLS-ESQAQRLANAGLDYYNHN 153 (345)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEEecCCCCCcchHHHHHHHHHHH-HhCCCEEEEeCCcCC-HHHHHHHHHcCCCEEeec
Confidence 45555555555554 78777665 21 1 24544444443 356887655554455 889999999999999987
Q ss_pred EeCC-CCCCccccCcccccchHHHHHhhhhcCCccc
Q 005967 89 VAAM-GLEPGKHLGKEIAFLDPYLHKLKESYGINVC 123 (667)
Q Consensus 89 V~~~-gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~c 123 (667)
..+. ++-+.-+-+.++++-.+.+..+.+ .|+.+|
T Consensus 154 leT~p~~f~~I~~~~~~~~rl~~i~~a~~-~G~~v~ 188 (345)
T PRK15108 154 LDTSPEFYGNIITTRTYQERLDTLEKVRD-AGIKVC 188 (345)
T ss_pred cccChHhcCCCCCCCCHHHHHHHHHHHHH-cCCcee
Confidence 7762 121211113334333444555443 466554
No 79
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=27.30 E-value=1.8e+02 Score=31.66 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEE-cccccHHHHHHHHHhhhhc-----CCEEe--ec--------CccCCHHHHHHHHH
Q 005967 15 EVEDMYILLNEVKRQIPSVTAVSS-GAIASDYQRLRVESVCSRL-----GLVSL--AY--------LWKQDQSLLLQEMI 78 (667)
Q Consensus 15 E~e~l~~~L~~~k~~~p~v~~v~~-GaI~s~yqr~rve~vc~~l-----gl~~l--~p--------LW~~~~~~ll~em~ 78 (667)
..|.+.+.++++++. |+..+.+ |+-...+...++.++|+.+ ++... +| .++....+.|++|.
T Consensus 71 s~eeI~e~~~~~~~~--G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 71 SLEEIAERAAEAWKA--GATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CHHHHHHHHHHHHHC--CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345566666666664 7766655 4544444444544554443 34432 23 36777899999999
Q ss_pred HCCCeEEE
Q 005967 79 TNGINAIT 86 (667)
Q Consensus 79 ~~g~~a~i 86 (667)
++|++.+.
T Consensus 149 eAGl~~i~ 156 (343)
T TIGR03551 149 EAGLDSMP 156 (343)
T ss_pred HhCccccc
Confidence 99999886
No 80
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=26.97 E-value=3e+02 Score=26.69 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhc----------------CCEEeecCccCCHHHHHHHHHHCCC
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL----------------GLVSLAYLWKQDQSLLLQEMITNGI 82 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~l----------------gl~~l~pLW~~~~~~ll~em~~~g~ 82 (667)
.+..|.++..++ |++.|+.|--+++--.+...+++... ++..+.||+.-...++..-.-..|+
T Consensus 87 R~~~l~~~a~~~-g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~~~k~ei~~~~~~~~l 165 (189)
T TIGR02432 87 RYDFFEEIAKKH-GADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLGISKSEIEEYLKENGL 165 (189)
T ss_pred HHHHHHHHHHHc-CCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCCCCCHHHHHHHHHHcCC
Confidence 344666677776 89999999998876655555555422 4556778887777777766666777
Q ss_pred eEEE
Q 005967 83 NAIT 86 (667)
Q Consensus 83 ~a~i 86 (667)
....
T Consensus 166 p~~~ 169 (189)
T TIGR02432 166 PWFE 169 (189)
T ss_pred Ceee
Confidence 5543
No 81
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.66 E-value=5.1e+02 Score=27.36 Aligned_cols=69 Identities=9% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCC
Q 005967 22 LLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGL 94 (667)
Q Consensus 22 ~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL 94 (667)
.++++++. ||+|++.-|+--+. ....-+.|.++||....-.=-..+.+-++.+.+..-.++- .|+..|.
T Consensus 109 f~~~~~~a--GvdGviipDLp~ee-~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY-~vs~~Gv 177 (258)
T PRK13111 109 FAADAAEA--GVDGLIIPDLPPEE-AEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY-YVSRAGV 177 (258)
T ss_pred HHHHHHHc--CCcEEEECCCCHHH-HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE-EEeCCCC
Confidence 45555555 88888888877653 3444566888888887544444545666666655433332 2444443
No 82
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.51 E-value=4.8e+02 Score=27.03 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEE
Q 005967 22 LLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 85 (667)
Q Consensus 22 ~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ 85 (667)
.++++++. |++++++-|+--+ +..++-+.|.++|+....-+=--.+.+.++..++.....+
T Consensus 96 fi~~~~~a--G~~giiipDl~~e-e~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~v 156 (242)
T cd04724 96 FLRDAKEA--GVDGLIIPDLPPE-EAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred HHHHHHHC--CCcEEEECCCCHH-HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCE
Confidence 35555554 8888888887554 4556667788888877554434455667777776333333
No 83
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=25.98 E-value=2.2e+02 Score=31.88 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccH--HHHH-HHHHhhhhcCCEEeecCccCCHHHHHHHHHHCC-CeEE
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASD--YQRL-RVESVCSRLGLVSLAYLWKQDQSLLLQEMITNG-INAI 85 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~--yqr~-rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g-~~a~ 85 (667)
|+.++.++.+++ |.+++++|.=+.+ -|-. .+-.+....++..+.||.+.|-+|...---+.| |+.-
T Consensus 272 m~r~a~~iA~~~-g~~~IaTGhslgqvaSQtl~Nl~~i~~~~~lpilRPLi~~dK~EIi~~Ar~iGT~~~s 341 (381)
T PRK08384 272 MVKHADRIAKEF-GAKGIVMGDSLGQVASQTLENMYIVSQASDLPIYRPLIGMDKEEIVAIAKTIGTFELS 341 (381)
T ss_pred HHHHHHHHHHHc-CCCEEEEcccchhHHHHHHHHHHHHhccCCCcEEeeCCCCCHHHHHHHHHHcCCcccc
Confidence 677788888887 9999999987643 2211 112234445688999999999999999999999 7754
No 84
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.68 E-value=3.8e+02 Score=27.28 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHCCCeEEEE
Q 005967 69 DQSLLLQEMITNGINAITV 87 (667)
Q Consensus 69 ~~~~ll~em~~~g~~a~ii 87 (667)
+..++.+++.+.|++.+++
T Consensus 150 ~~~~~~~~~~~~G~~~i~~ 168 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILF 168 (241)
T ss_pred CHHHHHHHHHHcCCCEEEE
Confidence 5566677777777766654
No 85
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=23.77 E-value=4.6e+02 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCCCceEEEEcccccH
Q 005967 20 YILLNEVKRQIPSVTAVSSGAIASD 44 (667)
Q Consensus 20 ~~~L~~~k~~~p~v~~v~~GaI~s~ 44 (667)
..+++++++.. ++.-++.|.|-|.
T Consensus 60 ~~~i~~i~~~~-~~pv~~~GGI~s~ 83 (243)
T cd04731 60 LDVVERVAEEV-FIPLTVGGGIRSL 83 (243)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCCCH
Confidence 34555555554 4566666776654
No 86
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.76 E-value=2.5e+02 Score=31.12 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcccc---cHHHHHHHHHhhhhcCCEEeecCcc--CCHHHHHHHHHHCCCeEEE
Q 005967 12 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIA---SDYQRLRVESVCSRLGLVSLAYLWK--QDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 12 ~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~---s~yqr~rve~vc~~lgl~~l~pLW~--~~~~~ll~em~~~g~~a~i 86 (667)
..+++|.+..++ +..++++.++. |+. |++|-.-++.+=... |-.+++- .-..+-.++|+++|.+++.
T Consensus 106 ~~~d~er~~~L~----~~~~g~D~ivi-D~AhGhs~~~i~~ik~ik~~~---P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQIL----ALSPALNFICI-DVANGYSEHFVQFVAKAREAW---PDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHH----hcCCCCCEEEE-ECCCCcHHHHHHHHHHHHHhC---CCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 345555544444 33457888775 555 788888777776654 1223443 3467788999999999887
Q ss_pred EEEe
Q 005967 87 VKVA 90 (667)
Q Consensus 87 i~V~ 90 (667)
|.+-
T Consensus 178 VGIG 181 (346)
T PRK05096 178 VGIG 181 (346)
T ss_pred Eccc
Confidence 6543
No 87
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=23.47 E-value=1.3e+02 Score=26.55 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHh--------hhhcCCEEeecCc
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESV--------CSRLGLVSLAYLW 66 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~v--------c~~lgl~~l~pLW 66 (667)
.+..+.+..+++ |.+.|++|..+++.+.++..+. ..+.|+..+.||+
T Consensus 49 r~~~~~~~a~~~-g~~~i~~g~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~ 103 (103)
T cd01986 49 REEAAKRIAKEK-GAETIATGTRRDDVANRALGLTALLNLTVTLSGAGIQSLEPLI 103 (103)
T ss_pred HHHHHHHHHHHc-CCCEEEEcCCcchHHHHHHHHHHHhcCCCCcccCcceEeecCC
Confidence 344566666666 8999999999999988876443 3445555555553
No 88
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=22.91 E-value=2.3e+02 Score=32.87 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=54.7
Q ss_pred CceEEEEccc---ccHHHHHHHHHhhhhcCCEEeecCcc--CCHHHHHHHHHHCCCeEEEEEEeCCC--CCCc-cccCcc
Q 005967 32 SVTAVSSGAI---ASDYQRLRVESVCSRLGLVSLAYLWK--QDQSLLLQEMITNGINAITVKVAAMG--LEPG-KHLGKE 103 (667)
Q Consensus 32 ~v~~v~~GaI---~s~yqr~rve~vc~~lgl~~l~pLW~--~~~~~ll~em~~~g~~a~ii~V~~~g--L~~~-~~lG~~ 103 (667)
|++.|+. |. .+.++..-++.+.+... -.|++- .-..+-.+.++++|.+++.+.+...+ .... .-.|..
T Consensus 253 g~d~i~i-d~a~G~s~~~~~~i~~ik~~~~---~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 253 GVDVLVV-DSSQGNSIYQIDMIKKLKSNYP---HVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCEEEE-ecCCCCchHHHHHHHHHHhhCC---CceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCC
Confidence 8888875 33 57777777888777642 233433 45667788999999999988655432 1110 012322
Q ss_pred cccchHHHHHhhhhcCCccccCCc
Q 005967 104 IAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 104 l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
--.....+.++.+++|+.+.-+||
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGG 352 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGG 352 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCC
Confidence 111233455555667877777766
No 89
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.44 E-value=3.9e+02 Score=26.81 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=27.8
Q ss_pred CceEEEEcccccHH-HHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEE
Q 005967 32 SVTAVSSGAIASDY-QRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 32 ~v~~v~~GaI~s~y-qr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~ 88 (667)
|+++|..|.-+..+ .-...-+.+..+|+.+..-. ...+-+.+..+.|++.+.+.
T Consensus 94 Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v---~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 94 GADAVLLIVAALDDEQLKELYELARELGMEVLVEV---HDEEELERALALGAKIIGIN 148 (217)
T ss_pred CCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEE---CCHHHHHHHHHcCCCEEEEe
Confidence 77777766654332 22222233556777652222 22223666667777666554
No 90
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.23 E-value=3e+02 Score=28.73 Aligned_cols=114 Identities=9% Similarity=0.102 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccc------cH-HHHHHHHHhhhhcC-----CEEeecCccCCHHHHHHHHHHCCC
Q 005967 15 EVEDMYILLNEVKRQIPSVTAVSSGAIA------SD-YQRLRVESVCSRLG-----LVSLAYLWKQDQSLLLQEMITNGI 82 (667)
Q Consensus 15 E~e~l~~~L~~~k~~~p~v~~v~~GaI~------s~-yqr~rve~vc~~lg-----l~~l~pLW~~~~~~ll~em~~~g~ 82 (667)
+.+.+.++++.+.+. ||+|++.+.-. +. .++.-++.+++..+ +.......-++..++.+...+.|.
T Consensus 16 D~~~~~~~i~~l~~~--Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Ga 93 (281)
T cd00408 16 DLDALRRLVEFLIEA--GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGA 93 (281)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCC
Confidence 456677888888776 99999876653 33 34444566666553 223333444567788888999999
Q ss_pred eEEEEEEeCCCCCCccccCcccccchHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEE
Q 005967 83 NAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVL 146 (667)
Q Consensus 83 ~a~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i 146 (667)
+++++ ++| .+..-+=+++.++..++.+.-+ ---+.++.|.+....+..
T Consensus 94 d~v~v------~pP-~y~~~~~~~~~~~~~~ia~~~~---------~pi~iYn~P~~tg~~l~~ 141 (281)
T cd00408 94 DGVLV------VPP-YYNKPSQEGIVAHFKAVADASD---------LPVILYNIPGRTGVDLSP 141 (281)
T ss_pred CEEEE------CCC-cCCCCCHHHHHHHHHHHHhcCC---------CCEEEEECccccCCCCCH
Confidence 99998 344 2433222335666666665322 234677788765323333
No 91
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.70 E-value=2.5e+02 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccC
Q 005967 18 DMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQ 68 (667)
Q Consensus 18 ~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~ 68 (667)
|+.+.|..++..- .-+-+.|=--++.++|.-|-.+|..+||++-+.=.+.
T Consensus 3 ~~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~ 52 (60)
T cd02640 3 DYRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGN 52 (60)
T ss_pred hHHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCC
Confidence 5566777777652 2566778777899999999999999999988764443
No 92
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.47 E-value=5.3e+02 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHH
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQ 46 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yq 46 (667)
-.++++++++.. ++.-.+.|.|-+..+
T Consensus 62 ~~~~i~~i~~~~-~ipv~~~GGi~s~~~ 88 (253)
T PRK02083 62 MLDVVERVAEQV-FIPLTVGGGIRSVED 88 (253)
T ss_pred hHHHHHHHHHhC-CCCEEeeCCCCCHHH
Confidence 344555555554 455666666665443
No 93
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.15 E-value=2e+02 Score=23.16 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeec
Q 005967 17 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY 64 (667)
Q Consensus 17 e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~p 64 (667)
+++.+.|+.+... .-+.+.|-- ++.++|.-|-++|...||.+-+.
T Consensus 2 ~~i~~~i~~F~~~--~~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~S~ 46 (58)
T cd02646 2 EDIKDEIEAFLLD--SRDSLSFPP-MDKHGRKTIHKLANCYNLKSKSR 46 (58)
T ss_pred hHHHHHHHHHHhC--CCceEecCC-CCHHHHHHHHHHHHHcCCccccc
Confidence 3445556665554 356778888 68899999999999999998654
No 94
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.08 E-value=6.5e+02 Score=22.66 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHhhCCCceEEEEccc--c--cHHHHHHHHHhhhh-cCCEE--eecCccCCHHHHHHHHHHCCCeEEE
Q 005967 14 DEVEDMYILLNEVKRQIPSVTAVSSGAI--A--SDYQRLRVESVCSR-LGLVS--LAYLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 14 dE~e~l~~~L~~~k~~~p~v~~v~~GaI--~--s~yqr~rve~vc~~-lgl~~--l~pLW~~~~~~ll~em~~~g~~a~i 86 (667)
-..|.+.+.+++++.. +++..+.+|.= + .++.+....-.... .++.. .+.-+..+ .++++.|.+.|++.+.
T Consensus 28 ~~~e~i~~~~~~~~~~-~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~-~~~l~~l~~~~~~~i~ 105 (166)
T PF04055_consen 28 MSPEEILEEIKELKQD-KGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLD-EELLDELKKLGVDRIR 105 (166)
T ss_dssp CHHHHHHHHHHHHHHH-TTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHC-HHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHhHh-cCCcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccchh-HHHHHHHHhcCccEEe
Confidence 3556777777777522 25777776653 2 33433332222221 24333 33333333 9999999999999999
Q ss_pred EEEeCCCCC-Ccccc--CcccccchHHHHHhhhhcCCccccCCceeEEEeecCCC
Q 005967 87 VKVAAMGLE-PGKHL--GKEIAFLDPYLHKLKESYGINVCGEGGEYETLTLDCPL 138 (667)
Q Consensus 87 i~V~~~gL~-~~~~l--G~~l~~~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~Pl 138 (667)
+.+.+.-=. -.+.. +...++..+.|..+.+ +|+.. ..++.+-.|.
T Consensus 106 ~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~~------~~~~i~~~~~ 153 (166)
T PF04055_consen 106 ISLESLDEESVLRIINRGKSFERVLEALERLKE-AGIPR------VIIFIVGLPG 153 (166)
T ss_dssp EEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH-TTSET------EEEEEEEBTT
T ss_pred cccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH-cCCCc------EEEEEEEeCC
Confidence 988865411 01122 2344445566666664 56543 4444444443
Done!