Query 005967
Match_columns 667
No_of_seqs 437 out of 2560
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjz_A N-type ATP pyrophosphat 100.0 3.5E-45 1.2E-49 372.3 15.9 155 13-177 76-231 (237)
2 2b33_A Protein synthesis inhib 99.9 3.2E-26 1.1E-30 215.6 17.0 123 352-492 17-139 (140)
3 3r0p_A L-PSP putative endoribo 99.9 4.5E-26 1.5E-30 211.0 16.0 119 354-490 9-127 (127)
4 1x25_A Hypothetical UPF0076 pr 99.9 4.3E-26 1.5E-30 211.4 14.9 119 354-490 9-127 (128)
5 2cvl_A TTHA0137, protein trans 99.9 7.6E-26 2.6E-30 208.6 15.7 119 354-491 6-124 (124)
6 3l7q_A Putative translation in 99.9 5E-26 1.7E-30 210.2 14.3 119 354-490 6-124 (125)
7 2dyy_A UPF0076 protein PH0854; 99.9 6.9E-26 2.4E-30 209.5 15.3 119 354-490 7-125 (126)
8 1qd9_A Purine regulatory prote 99.9 1.3E-25 4.3E-30 207.2 15.3 118 354-490 6-123 (124)
9 1qah_A Perchloric acid soluble 99.9 1.1E-25 3.9E-30 210.8 15.0 121 354-492 10-130 (136)
10 3k0t_A Endoribonuclease L-PSP, 99.9 9.5E-26 3.2E-30 213.2 13.9 118 354-490 25-142 (143)
11 3m1x_A Putative endoribonuclea 99.9 1.9E-25 6.4E-30 212.3 15.5 119 354-490 30-148 (148)
12 1qu9_A YJGF protein; structura 99.9 3E-25 1E-29 205.7 15.6 122 354-491 7-128 (128)
13 1xrg_A Putative translation in 99.9 2.8E-25 9.7E-30 212.8 14.2 119 354-490 38-156 (156)
14 1jd1_A Hypothetical 13.9 kDa p 99.9 5E-25 1.7E-29 204.6 15.4 120 354-492 10-129 (129)
15 3v4d_A Aminoacrylate peracid r 99.9 5.8E-25 2E-29 205.5 15.9 120 354-491 14-133 (134)
16 3lyb_A Putative endoribonuclea 99.9 3.3E-25 1.1E-29 214.2 12.9 126 353-496 3-155 (165)
17 2cwj_A Putative endonuclease; 99.9 2.3E-25 7.9E-30 205.1 9.9 119 356-492 3-121 (123)
18 3vcz_A Endoribonuclease L-PSP; 99.9 1.3E-24 4.3E-29 207.7 15.2 130 346-490 23-152 (153)
19 3quw_A Protein MMF1; chorismat 99.9 1.7E-24 5.9E-29 206.7 15.8 119 354-491 34-152 (153)
20 3lme_A Possible translation in 99.9 6.2E-24 2.1E-28 199.5 14.8 120 356-493 11-131 (138)
21 2ig8_A Hypothetical protein PA 99.9 6.6E-24 2.3E-28 200.6 12.7 119 358-493 14-137 (144)
22 1pf5_A Hypothetical protein YJ 99.9 1.7E-23 5.9E-28 194.6 15.0 117 356-492 13-130 (131)
23 3kjj_A NMB1025 protein; YJGF p 99.9 3E-22 1E-26 185.8 13.7 109 360-492 16-124 (128)
24 3i7t_A RV2704, putative unchar 99.9 2.1E-22 7.3E-27 191.4 11.7 114 354-493 9-123 (149)
25 3d01_A Uncharacterized protein 99.9 2.1E-22 7.3E-27 194.5 10.1 122 355-490 26-163 (165)
26 3i3f_A Hypothetical protein; s 99.9 1.1E-21 3.8E-26 184.8 14.1 113 360-491 25-140 (141)
27 2ewc_A Conserved hypothetical 99.9 8.4E-22 2.9E-26 182.3 12.4 113 355-492 5-122 (126)
28 2otm_A Hypothetical protein; s 99.9 6.1E-22 2.1E-26 189.3 11.6 123 354-490 17-154 (154)
29 3k12_A Uncharacterized protein 99.9 5.8E-22 2E-26 182.4 10.9 110 361-493 8-117 (122)
30 3gtz_A Putative translation in 99.9 2.9E-21 9.9E-26 178.2 12.8 107 362-493 12-119 (124)
31 3k12_A Uncharacterized protein 99.6 3.1E-15 1.1E-19 137.4 12.9 84 254-342 32-115 (122)
32 3kjj_A NMB1025 protein; YJGF p 99.6 3.1E-15 1.1E-19 138.6 12.9 83 254-341 40-122 (128)
33 3gtz_A Putative translation in 99.6 3.9E-15 1.3E-19 137.2 12.1 84 254-342 34-117 (124)
34 2ewc_A Conserved hypothetical 99.6 7.8E-15 2.7E-19 135.5 13.7 82 254-341 35-120 (126)
35 3v4d_A Aminoacrylate peracid r 99.6 1.3E-14 4.6E-19 135.2 13.8 82 254-341 51-132 (134)
36 1jd1_A Hypothetical 13.9 kDa p 99.6 1.5E-14 5.3E-19 133.9 13.9 82 254-341 46-127 (129)
37 3quw_A Protein MMF1; chorismat 99.6 1.2E-14 4.2E-19 138.6 13.3 82 254-341 70-151 (153)
38 3i7t_A RV2704, putative unchar 99.6 8.8E-15 3E-19 139.0 11.5 82 255-341 39-120 (149)
39 2dyy_A UPF0076 protein PH0854; 99.6 1.5E-14 5.3E-19 133.3 12.8 81 254-340 44-124 (126)
40 1qah_A Perchloric acid soluble 99.6 2E-14 6.7E-19 134.5 13.6 83 254-342 47-129 (136)
41 2cwj_A Putative endonuclease; 99.6 5.7E-15 2E-19 135.6 9.2 83 254-342 38-120 (123)
42 1qu9_A YJGF protein; structura 99.6 1.6E-14 5.3E-19 133.6 12.0 84 254-340 43-126 (128)
43 3l7q_A Putative translation in 99.6 1.1E-14 3.6E-19 134.3 10.8 81 254-340 43-123 (125)
44 1qd9_A Purine regulatory prote 99.6 1.4E-14 4.7E-19 133.4 11.5 81 254-340 42-122 (124)
45 2b33_A Protein synthesis inhib 99.6 2.9E-14 9.9E-19 134.1 13.7 82 254-341 56-137 (140)
46 2cvl_A TTHA0137, protein trans 99.6 1.6E-14 5.6E-19 132.8 11.7 81 254-340 42-122 (124)
47 1x25_A Hypothetical UPF0076 pr 99.6 1.5E-14 5E-19 133.9 11.4 81 254-340 46-126 (128)
48 3r0p_A L-PSP putative endoribo 99.6 3.7E-14 1.3E-18 131.0 13.7 81 254-340 46-126 (127)
49 3k0t_A Endoribonuclease L-PSP, 99.5 3E-14 1E-18 134.4 12.9 80 255-340 62-141 (143)
50 1pf5_A Hypothetical protein YJ 99.5 2.4E-14 8.1E-19 132.9 11.7 82 254-341 46-128 (131)
51 2ig8_A Hypothetical protein PA 99.5 2.7E-14 9.3E-19 134.7 12.1 83 256-342 52-135 (144)
52 3vcz_A Endoribonuclease L-PSP; 99.5 2.6E-14 9E-19 136.3 11.9 85 254-340 67-151 (153)
53 3m1x_A Putative endoribonuclea 99.5 3E-14 1E-18 135.2 11.3 81 254-340 67-147 (148)
54 1xrg_A Putative translation in 99.5 3.1E-14 1.1E-18 136.2 11.2 81 254-340 75-155 (156)
55 3lme_A Possible translation in 99.5 1.3E-13 4.5E-18 129.2 13.1 83 255-342 46-129 (138)
56 3lyb_A Putative endoribonuclea 99.5 6.2E-14 2.1E-18 135.3 10.2 81 256-342 68-150 (165)
57 3i3f_A Hypothetical protein; s 99.4 3.8E-13 1.3E-17 126.5 11.1 81 255-341 55-139 (141)
58 2otm_A Hypothetical protein; s 99.3 1.3E-12 4.6E-17 124.6 6.0 81 255-340 63-153 (154)
59 3d01_A Uncharacterized protein 99.3 1.6E-12 5.4E-17 125.5 6.4 81 255-340 71-162 (165)
60 1k92_A Argininosuccinate synth 92.8 0.045 1.5E-06 60.4 2.7 123 19-146 109-259 (455)
61 2bdq_A Copper homeostasis prot 84.9 2.8 9.7E-05 41.9 8.7 96 13-118 72-175 (224)
62 1twd_A Copper homeostasis prot 81.7 5.3 0.00018 40.7 9.3 92 13-116 69-166 (256)
63 3iwp_A Copper homeostasis prot 80.6 4.1 0.00014 42.2 8.2 94 13-119 107-207 (287)
64 1kor_A Argininosuccinate synth 80.2 1.3 4.5E-05 47.9 4.6 92 19-115 95-192 (400)
65 2nz2_A Argininosuccinate synth 67.3 2.3 7.8E-05 46.3 2.4 91 20-115 100-200 (413)
66 1msz_A DNA-binding protein smu 67.2 7.2 0.00025 33.2 5.0 54 14-69 16-69 (86)
67 2der_A TRNA-specific 2-thiouri 65.0 0.84 2.9E-05 49.1 -1.6 85 24-115 125-226 (380)
68 2c5s_A THII, probable thiamine 60.8 6.8 0.00023 42.3 4.6 63 19-82 278-343 (413)
69 2hma_A Probable tRNA (5-methyl 60.6 0.66 2.3E-05 49.8 -3.4 88 21-115 113-218 (376)
70 3bl5_A Queuosine biosynthesis 56.8 9.9 0.00034 36.3 4.6 83 19-102 100-197 (219)
71 1thf_D HISF protein; thermophI 54.1 25 0.00084 34.5 7.1 87 32-127 96-203 (253)
72 1h5y_A HISF; histidine biosynt 49.9 41 0.0014 32.4 7.9 56 32-88 99-174 (253)
73 2w6r_A Imidazole glycerol phos 48.3 56 0.0019 32.2 8.7 89 32-128 96-209 (266)
74 2pg3_A Queuosine biosynthesis 44.6 39 0.0013 32.8 6.8 58 24-82 109-178 (232)
75 3f4w_A Putative hexulose 6 pho 43.9 70 0.0024 30.2 8.4 85 23-117 70-156 (211)
76 1geq_A Tryptophan synthase alp 40.3 99 0.0034 30.0 9.0 57 21-80 99-155 (248)
77 3ffs_A Inosine-5-monophosphate 39.7 78 0.0027 34.0 8.7 61 23-87 149-211 (400)
78 3q58_A N-acetylmannosamine-6-p 34.6 1.2E+02 0.004 29.8 8.5 87 32-128 101-190 (229)
79 1vzw_A Phosphoribosyl isomeras 34.6 49 0.0017 32.2 5.7 87 32-127 97-198 (244)
80 3igs_A N-acetylmannosamine-6-p 33.6 1.3E+02 0.0046 29.4 8.7 86 32-127 101-189 (232)
81 2dpl_A GMP synthetase, GMP syn 33.2 59 0.002 33.4 6.2 82 19-102 108-200 (308)
82 3tsm_A IGPS, indole-3-glycerol 31.6 1.2E+02 0.004 30.9 8.1 65 24-95 136-201 (272)
83 3tha_A Tryptophan synthase alp 31.5 94 0.0032 31.3 7.2 89 21-116 107-196 (252)
84 1ka9_F Imidazole glycerol phos 31.0 1E+02 0.0034 30.0 7.3 51 69-127 153-204 (252)
85 2y88_A Phosphoribosyl isomeras 30.4 97 0.0033 29.9 7.0 87 32-127 96-201 (244)
86 3qja_A IGPS, indole-3-glycerol 29.6 1.9E+02 0.0064 29.2 9.2 54 32-88 135-189 (272)
87 2q5c_A NTRC family transcripti 28.0 1.2E+02 0.004 29.0 7.0 68 16-88 80-149 (196)
88 3k32_A Uncharacterized protein 27.9 60 0.002 31.0 4.9 51 32-83 101-155 (203)
89 1hw6_A 2,5-diketo-D-gluconic a 26.9 1.5E+02 0.005 29.7 7.8 93 14-121 115-213 (278)
90 1l1s_A Hypothetical protein MT 26.6 1.1E+02 0.0037 26.2 5.9 94 4-116 4-105 (113)
91 3nav_A Tryptophan synthase alp 26.5 1.8E+02 0.0061 29.4 8.4 59 23-84 118-176 (271)
92 1jcn_A Inosine monophosphate d 26.1 2.1E+02 0.0072 31.3 9.5 102 22-127 259-366 (514)
93 2jwk_A Protein TOLR; periplasm 23.7 1.2E+02 0.0042 23.5 5.3 45 15-59 28-73 (74)
94 3erp_A Putative oxidoreductase 23.5 96 0.0033 32.2 5.9 79 13-93 164-248 (353)
95 3tqi_A GMP synthase [glutamine 23.0 24 0.00083 39.2 1.2 84 19-105 318-419 (527)
96 1tr0_A Stable protein 1; plant 21.9 68 0.0023 27.4 3.6 33 11-43 21-53 (108)
97 4avf_A Inosine-5'-monophosphat 21.8 2.4E+02 0.0082 30.9 8.9 55 32-88 241-298 (490)
98 3vnd_A TSA, tryptophan synthas 21.5 2.7E+02 0.0091 28.1 8.5 57 22-81 115-171 (267)
99 1wy5_A TILS, hypothetical UPF0 21.3 1.3E+02 0.0046 30.6 6.4 66 19-85 113-189 (317)
100 2qyc_A Ferredoxin-like protein 21.1 76 0.0026 26.8 3.7 32 12-43 18-49 (103)
101 2pju_A Propionate catabolism o 20.7 1.4E+02 0.0048 29.4 6.0 75 16-95 92-174 (225)
102 3ln3_A Dihydrodiol dehydrogena 20.7 2.2E+02 0.0075 28.9 7.8 100 15-122 144-253 (324)
103 3khj_A Inosine-5-monophosphate 20.1 2.9E+02 0.0099 29.0 8.8 54 32-87 117-172 (361)
No 1
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=100.00 E-value=3.5e-45 Score=372.30 Aligned_cols=155 Identities=36% Similarity=0.559 Sum_probs=138.7
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCC
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAM 92 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~ 92 (667)
++|+|+|+++|+++ ||++|++|||+|+|||.|+|++|.|+||++++|||++||++||+||+++||+|+||||++.
T Consensus 76 ~~e~e~l~~~l~~~-----~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~ 150 (237)
T 3rjz_A 76 EKEVEDLKRVLSGL-----KIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAY 150 (237)
T ss_dssp --CHHHHHHHHTTS-----CCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEEST
T ss_pred hHHHHHHHHHHHhc-----CCcEEEECCcchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecC
Confidence 56899999988765 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeeeE
Q 005967 93 GLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFH 171 (667)
Q Consensus 93 gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~~ 171 (667)
|||+ +||||+|++ +.+.|.+|+++||+|||||||||||||+|||+|+ +||+|++.++++++++ .+||+.|++++
T Consensus 151 gL~~-~~lG~~l~~~~~~~L~~l~~~~gvd~cGEgGEfhT~V~d~PlF~-~~i~i~~~e~v~~~~~---~~~~~~i~~a~ 225 (237)
T 3rjz_A 151 GLDE-SWLGRILDESALEELITLNEKYKVHVAGEGGEFETFVLDMPLFK-YKIVVDKAKKVWEPCT---SSGKLIIEEAH 225 (237)
T ss_dssp TCCG-GGTTCBCCHHHHHHHHHHHHHHCCCTTCTTTTEEEEEEECTTCS-EEEEEEEEEEC--CCS---SEEEEEEEEEE
T ss_pred CCCh-HHCCCccCHHHHHHHHHHHhhcCccccCCCceeEEEEEecCccc-eeeEEEEEEEEEecCC---cEEEEEEEEEE
Confidence 9998 699999996 7888999999999999999999999999999999 5999999999998531 47999999999
Q ss_pred EEeccC
Q 005967 172 LEYKAG 177 (667)
Q Consensus 172 l~~k~~ 177 (667)
|++|-+
T Consensus 226 l~~~~~ 231 (237)
T 3rjz_A 226 LESKLE 231 (237)
T ss_dssp EEECCC
T ss_pred Eeehhh
Confidence 999943
No 2
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=99.94 E-value=3.2e-26 Score=215.63 Aligned_cols=123 Identities=25% Similarity=0.373 Sum_probs=115.2
Q ss_pred ccCCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCc
Q 005967 352 SISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYV 431 (667)
Q Consensus 352 s~S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~ 431 (667)
..++|+|+++||||||+++|+++|+|||+|++|.++.+..+|+++|++++|+|+.++|+++|++++++ +++++|++|
T Consensus 17 ~~~~~~p~~~g~ys~av~~g~~lfvSGq~~~d~~tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~V-vk~tvyl~d-- 93 (140)
T 2b33_A 17 VETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDV-VKVTVFTTS-- 93 (140)
T ss_dssp ECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC--
T ss_pred ecCCCCCCCCCCcCCEEEECCEEEEEeeCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC--
Confidence 34689999999999999999999999999999988888878999999999999999999999999998 999999999
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 432 ASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 432 ~~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
+.++..++++|.+||. +.+|+|++|+|+.||++++||||++|++++
T Consensus 94 -~~df~~~n~v~~~~f~--------------~~~PArt~V~V~~L~~~~lVEIe~iA~~~~ 139 (140)
T 2b33_A 94 -MDYFQRVNEVYSRYFG--------------DHRPARSFVAVAQLPRNVEIEIEAIAVKEG 139 (140)
T ss_dssp -GGGHHHHHHHHHHHHT--------------TTCCEEEEEECSCCGGGCSEEEEEEEECCC
T ss_pred -chhHHHHHHHHHHHCC--------------CCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 7899999999999993 458999999999999999999999999864
No 3
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=99.94 E-value=4.5e-26 Score=210.98 Aligned_cols=119 Identities=27% Similarity=0.401 Sum_probs=112.4
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++|.++.++.+|+++|++++|+|+.++|+++|++++++ +++++|+++ .
T Consensus 9 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~v-vk~~vyl~d---~ 84 (127)
T 3r0p_A 9 SDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDI-VKLNVYLTD---L 84 (127)
T ss_dssp CTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCeEEECCEEEEeccCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHE-EEEEEEEcC---H
Confidence 589999999999999999999999999999998998888999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.+++.+++.|.+|| ++++|+|++++|+.||++++||||++|++
T Consensus 85 ~~~~~~~~v~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~ 127 (127)
T 3r0p_A 85 ANFPIVNEVMGQYF--------------QAPYPARAAIGINQLPRASLIEADGIMVI 127 (127)
T ss_dssp GGHHHHHHHHHHHC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 78999999999998 35789999999999999999999999963
No 4
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=99.93 E-value=4.3e-26 Score=211.43 Aligned_cols=119 Identities=29% Similarity=0.361 Sum_probs=112.7
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++|.++.+.++++++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 9 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~l~~v-vk~~vyl~d---~ 84 (128)
T 1x25_A 9 TEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDV-AMAFVFLKD---M 84 (128)
T ss_dssp CTTSCCCCSSCCSEEEETTEEEEEEECSEETTTTEECSSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHhCCCHHHE-EEEEEEECC---H
Confidence 589999999999999999999999999999988888889999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.++..+++.|.+|| ++++|+|++++|+.||++++||||++|++
T Consensus 85 ~~~~~~n~~~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~ 127 (128)
T 1x25_A 85 NMFNDFNSVYAEYF--------------KDKPPARVTVEVSRLPKDALIEIAVICSK 127 (128)
T ss_dssp GGHHHHHHHHHHHC--------------CSSCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCCEEEEEcccCCCCCEEEEEEEEEe
Confidence 88999999999998 35789999999999999999999999986
No 5
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=99.93 E-value=7.6e-26 Score=208.62 Aligned_cols=119 Identities=23% Similarity=0.328 Sum_probs=111.3
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++| ++.+..+|+++|++++|+|+.++|+++|++++++ +++++|++| .
T Consensus 6 ~~~~p~~~g~ys~av~~g~~~~vSGq~~~~~-~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~~~~v-vk~~vyl~d---~ 80 (124)
T 2cvl_A 6 TDRAPAAIGPYAQAVKAGGFVFVSGQIPLAP-DGSLVEGDIRVQTERVMENLKAVLEAAGSGLSRV-VQTTCFLAD---M 80 (124)
T ss_dssp CTTSCCCCSSCBSEEEETTEEEEEEECSBCT-TSCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---h
Confidence 5899999999999999999999999999998 6788778999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEec
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 491 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~ 491 (667)
.+++.+++.|.+|| ++++|+|++++|+.||++++||||++|+++
T Consensus 81 ~~~~~~~~~~~~~f--------------~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 2cvl_A 81 EDFPGFNEVYARYF--------------TPPYPARATVAVKALPRGVRVEVACVALAE 124 (124)
T ss_dssp GGHHHHHHHHHHHC--------------CSSCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCceEEEEcccCCCCCEEEEEEEEEeC
Confidence 88999999999998 345899999999999999999999999863
No 6
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=99.93 E-value=5e-26 Score=210.21 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=112.1
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+|+||||||+++|+++|+|||+|++|.++.+.++|+.+|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 6 ~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~v-vk~~vyl~d---~ 81 (125)
T 3l7q_A 6 TDKAPAAIGPYVQGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHV-VKTTCFLSD---I 81 (125)
T ss_dssp CTTSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEeccCCcCCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---H
Confidence 589999999999999999999999999999988888788999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.+++.+++.|.+|| ++++|+|++++|+.||++++||||++|++
T Consensus 82 ~~~~~~n~v~~~~f--------------~~~~Part~v~v~~L~~~~~VEIe~iA~v 124 (125)
T 3l7q_A 82 DDFVPFNEVYATAF--------------KSDFPARSAVEVARLPKDVKIEIEVIAEL 124 (125)
T ss_dssp GGHHHHHHHHHTTC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEcccCCCCCEEEEEEEEEe
Confidence 78999999998887 34789999999999999999999999974
No 7
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=99.93 E-value=6.9e-26 Score=209.45 Aligned_cols=119 Identities=32% Similarity=0.434 Sum_probs=111.5
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++|+++.+.++|+.+|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 7 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~v-vk~~vyl~d---~ 82 (126)
T 2dyy_A 7 TENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDV-IKVTVYLKD---M 82 (126)
T ss_dssp CTTSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEECC----
T ss_pred CCCCCCCCCCcccEEEECCEEEEeeeCCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---H
Confidence 578999999999999999999999999999988998888999999999999999999999999998 999999999 6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.+++.+++.|.+||. +++|+|++++|+.||++++||||++|++
T Consensus 83 ~~~~~~n~~~~~~f~--------------~~~Part~v~v~~L~~~~~VEIe~iA~~ 125 (126)
T 2dyy_A 83 NDFAKMNEVYAEYFG--------------ESKPARVAVEVSRLPKDVLIEIEAIAYK 125 (126)
T ss_dssp CCTTHHHHHHHHHHT--------------TTCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcC--------------CCCCcEEEEEcccCCCCCEEEEEEEEEe
Confidence 788899999999983 4689999999999999999999999986
No 8
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=99.93 E-value=1.3e-25 Score=207.20 Aligned_cols=118 Identities=29% Similarity=0.413 Sum_probs=110.7
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++| ++.++.+|+.+|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 6 ~~~~p~~~g~ys~av~~g~~v~vSGq~~~~~-~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~v-vk~~vyl~d---~ 80 (124)
T 1qd9_A 6 TKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETV-VKATVFIAD---M 80 (124)
T ss_dssp CTTSCCCCSSCBSEEEETTEEEECCBCSBCT-TSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEeeeCCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---h
Confidence 5789999999999999999999999999998 7788778999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.++..+++.|.+|| ++++|+|++++|+.||++++||||++|++
T Consensus 81 ~~~~~~n~~~~~~f--------------~~~~Part~v~v~~L~~~~~VEIe~iA~~ 123 (124)
T 1qd9_A 81 EQFAEVNEVYGQYF--------------DTHKPARSCVEVARLPKDALVEIEVIALV 123 (124)
T ss_dssp GGHHHHHHHHHHHS--------------SSCCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCCeEEEEcccCCCCCEEEEEEEEEe
Confidence 88999999999998 34589999999999999999999999975
No 9
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=99.93 E-value=1.1e-25 Score=210.81 Aligned_cols=121 Identities=27% Similarity=0.399 Sum_probs=113.8
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++|+++.+.++|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 10 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~v-vk~~vyl~d---~ 85 (136)
T 1qah_A 10 TSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNV-VKTTVLLAD---I 85 (136)
T ss_dssp CTTSCCCSSSCCSEEEETTEEEEEEECCBCTTTCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEeeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcc---C
Confidence 588999999999999999999999999999998888889999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
.++..+++.|.+|| ++++|+|++++|+.||++++||||++|++++
T Consensus 86 ~d~~~~n~~~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 130 (136)
T 1qah_A 86 NDFGTVNEIYKTYF--------------QGNLPARAAYQVAALPKGSRIEIEAIAVQGP 130 (136)
T ss_dssp GGHHHHHHHHHTTC--------------CSSCCEEEEEECSCCGGGCSEEEEEEEECSC
T ss_pred ccHHHHHHHHHHHc--------------CCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 88999999998887 3578999999999999999999999999865
No 10
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=99.93 E-value=9.5e-26 Score=213.17 Aligned_cols=118 Identities=30% Similarity=0.445 Sum_probs=110.8
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++++|+++||||||+++|+++|+|||+|++|.++.++. |+.+|++++|+|+.++|+++|++++++ +++++|++| .
T Consensus 25 ~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~~~~-d~~~Qt~~~l~ni~aiL~~aG~~l~~V-vk~tvyl~d---~ 99 (143)
T 3k0t_A 25 SDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVE-GIEAQITQVFENLKSVAQAAGGSFKDI-VKLNIFLTD---L 99 (143)
T ss_dssp CTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCSBCS-SHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCcEEEECCEEEEeeeCCcCCCCCcCCc-CHHHHHHHHHHHHHHHHHHhCCChHHE-EEEEEEEcC---h
Confidence 48899999999999999999999999999999888865 999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.+++.++++|.+|| ++++|+|++++|+.||+|++|||+++|++
T Consensus 100 ~df~~~n~v~~~~f--------------~~~~PArt~v~V~~Lp~~~lVEIe~iA~~ 142 (143)
T 3k0t_A 100 GHFAKVNEIMGSYF--------------SQPYPARAAIGVAALPRGAQVEMDAILVI 142 (143)
T ss_dssp GGHHHHHHHHTTTC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEcccCCCCCEEEEEEEEEE
Confidence 78999999988887 35789999999999999999999999986
No 11
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=99.93 E-value=1.9e-25 Score=212.31 Aligned_cols=119 Identities=24% Similarity=0.244 Sum_probs=112.6
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+|+||||||+++|+++|+|||+|++|.++.++++|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 30 ~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~G~~~~~d~~~Q~~~~l~nl~aiL~~aG~~l~~V-vk~tvyl~d---~ 105 (148)
T 3m1x_A 30 SPLAPEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKV-VKTTCLLAD---I 105 (148)
T ss_dssp CSSSCCCCSSCCSEEEETTEEEEEEEESEETTTTEESCSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCcEEEECCEEEEEeeCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---H
Confidence 589999999999999999999999999999988998888999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.++..++++|.+|| ++.+|+|++|+|+.||++++||||++|++
T Consensus 106 ~df~~~n~v~~~~f--------------g~~~PArt~V~V~~L~~~~lVEIe~iA~l 148 (148)
T 3m1x_A 106 KDFGVFNGIYAEAF--------------GNHKPARACFAAAALPKGALVEVECIATL 148 (148)
T ss_dssp GGHHHHHHHHHHHH--------------TTCCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHh--------------CCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 78999999999998 35689999999999999999999999963
No 12
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=99.93 E-value=3e-25 Score=205.68 Aligned_cols=122 Identities=21% Similarity=0.323 Sum_probs=111.9
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++|.++.+ ++|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 7 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~-~~d~~~Q~~~~l~ni~~~L~~ag~~~~~v-vk~~vyl~d---~ 81 (128)
T 1qu9_A 7 TENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEV-PADVAAQARQSLDNVKAIVEAAGLKVGDI-VKTTVFVKD---L 81 (128)
T ss_dssp CTTSCCCCSSCBSEEECSSEEEECCBCSCCTTTCCC-CSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCccceEEECCEEEEeccCCccCCCCCC-CcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---H
Confidence 589999999999999999999999999999988887 58999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEec
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 491 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~ 491 (667)
.++..+++.|.+||... ..++|+|++++|+.||++++||||++|+++
T Consensus 82 ~~~~~~n~~~~~~f~~~-----------~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 128 (128)
T 1qu9_A 82 NDFATVNATYEAFFTEH-----------NATFPARSCVEVARLPKDVKIEIEAIAVRR 128 (128)
T ss_dssp GGHHHHHHHHHHHHHHT-----------TCCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCC-----------CCCCCCEEEEEhhhCCCCCEEEEEEEEEeC
Confidence 89999999999999621 113799999999999999999999999863
No 13
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=99.92 E-value=2.8e-25 Score=212.80 Aligned_cols=119 Identities=27% Similarity=0.394 Sum_probs=112.0
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++|+|+++||||||+++|+++|+|||+|++|+++.+..+|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 38 ~~~~p~~~g~YS~av~~g~~lfvSGq~~~d~~tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~V-vk~tvyl~d---~ 113 (156)
T 1xrg_A 38 TNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKV-VKTTVFIKD---M 113 (156)
T ss_dssp CTTSCCCCSSCCSEEEETTEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEEeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHhCCCHHHE-EEEEEEECC---h
Confidence 689999999999999999999999999999988998888999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
.+++.++++|.+|| ++++|+|++|+|+.||++++||||++|++
T Consensus 114 ~df~~~n~v~~~~f--------------~~~~PArt~V~V~~Lp~~~lVEIe~iA~~ 156 (156)
T 1xrg_A 114 DSFAKVNEVYAKYF--------------SEPYPARSCVEVSKLPKGVLIEIEAVAIK 156 (156)
T ss_dssp GGHHHHHHHHHTTC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCceEEEEcCCCCCCCeEEEEEEEEC
Confidence 88999999998887 35689999999999999999999999973
No 14
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=99.92 E-value=5e-25 Score=204.55 Aligned_cols=120 Identities=20% Similarity=0.283 Sum_probs=111.1
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++++|.+.||||||+++|+++|+|||+|++|. +.+..+++++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 10 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-g~~~~g~~~~Q~~~~l~ni~~~L~~aG~~~~~v-vk~~vyl~d---~ 84 (129)
T 1jd1_A 10 CESAPAAAASYSHAMKVNNLIFLSGQIPVTPD-NKLVEGSIADKAEQVIQNIKNVLEASNSSLDRV-VKVNIFLAD---I 84 (129)
T ss_dssp CTTSCCCSSSCCSEEEETTEEEEEEECSBCTT-SCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-CCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHe-EEEEEEEcC---h
Confidence 47789999999999999999999999999987 666678999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
.++..+++.|.+|| ++++|+|++++|+.||++++||||++|++++
T Consensus 85 ~d~~~~n~~~~~~f--------------~~~~Part~v~v~~L~~~~~VEIe~iA~~~~ 129 (129)
T 1jd1_A 85 NHFAEFNSVYAKYF--------------NTHKPARSCVAVAALPLGVDMEMEAIAAERD 129 (129)
T ss_dssp GGHHHHHHHHHHHS--------------SSSCCEEEEEECSBCGGGCSEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEeccCCCCCEEEEEEEEEeCC
Confidence 89999999999998 3478999999999999999999999999763
No 15
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=99.92 E-value=5.8e-25 Score=205.47 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=107.3
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++++|+++||||||+++|+++|+|||+|++|+++.+.++|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 14 ~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~~~~~~~d~~~Q~~~~l~nl~~~L~~aG~~l~~v-vk~~vyl~d---~ 89 (134)
T 3v4d_A 14 PAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADV-TFNSIFITD---W 89 (134)
T ss_dssp CCC------CCCSEEEETTEEEEEEECCBCTTSCBSSTTCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeccCccCCCCCEECCccHHHHHHHHHHHHHHHHHHcCCCHHHe-EEEEEEECC---H
Confidence 478999999999999999999999999999998888789999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEec
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 491 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~ 491 (667)
.++..+++.|.+|| ++++|+|++|+|..||++++||||++|++|
T Consensus 90 ~~f~~~n~v~~~~f--------------~~~~Part~v~v~~l~~~~~VEIe~iA~~~ 133 (134)
T 3v4d_A 90 KNYAAINEIYAEFF--------------PGDKPARFCIQCGLVKPDALVEIATIAHIA 133 (134)
T ss_dssp GGHHHHHHHHHHHC--------------CSSCCEEEEEECBCSSTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEccccCCCCEEEEEEEEEeC
Confidence 78999999999998 357899999999988999999999999976
No 16
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=99.92 E-value=3.3e-25 Score=214.22 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=102.6
Q ss_pred cCCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCC-------------------------CHHHHHHHHHHHHHH
Q 005967 353 ISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNG-------------------------GPTVELEQALQNSEA 407 (667)
Q Consensus 353 ~S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~g-------------------------di~~Q~~~aL~nl~a 407 (667)
.+.++|+|+|+||||+++|+++|+|||+|++|.++.+..+ ++.+|++++|+|+.+
T Consensus 3 ~~~~ap~p~g~Ys~av~~G~~lfvSGq~~~~~~~g~l~~g~~~~~~~~~~~~g~~G~~g~~~~~~d~~~Qt~~~l~Ni~a 82 (165)
T 3lyb_A 3 LEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESIRR 82 (165)
T ss_dssp ------------CCEEEETTEEEECCBCCEETTTTEECCSGGGSCHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCCCCeEccCcccccccccccccccccccccccccCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999988888765 889999999999999
Q ss_pred HHHHcCCCCcceeEEEEEEEecCccchhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCC-C-CCCeEEEE
Q 005967 408 VAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL-P-KSALVEIK 485 (667)
Q Consensus 408 VL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~L-P-~~AlVEIe 485 (667)
+|+++|++++++ +++++|+++ +.++..++++|.+|| ++.+|+|++|+|+.| | ++++|||+
T Consensus 83 iL~~aG~~l~~V-vkvtvyl~d---~~df~~~n~v~~~~f--------------~~~~PArt~V~V~~L~p~~~~lVEIe 144 (165)
T 3lyb_A 83 TVASAGGQMSDV-IKLVQYFRN---LDHFPYYSRVRKLFY--------------PDQPPVSTVVQVSEMLPDATVLIEVE 144 (165)
T ss_dssp HHHTTTCCGGGE-EEEEEEESC---GGGHHHHHHHHHHHC--------------SSCCCEEEEEECSCCSSCTTCCEEEE
T ss_pred HHHHhcCChhHh-EEEEEEECC---HHHhHHHHHHHHHHc--------------CCCCCceEEEEccccCCCCCCEEEEE
Confidence 999999999998 999999999 778999999999998 356899999999999 9 99999999
Q ss_pred EEEEecCCCch
Q 005967 486 PILYVTDDSET 496 (667)
Q Consensus 486 ~iA~v~d~~~~ 496 (667)
++|+++...+.
T Consensus 145 ~iA~~~~~~~~ 155 (165)
T 3lyb_A 145 ATVWLPPSFNS 155 (165)
T ss_dssp EEEECC-----
T ss_pred EEEEeCCCCCc
Confidence 99998766443
No 17
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=99.92 E-value=2.3e-25 Score=205.12 Aligned_cols=119 Identities=27% Similarity=0.369 Sum_probs=109.1
Q ss_pred CCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchh
Q 005967 356 WAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSE 435 (667)
Q Consensus 356 wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d 435 (667)
.+|+++||||||+++|+++|+|||+|++|.++.+.++|+.+|++++|+|+.++|+++|++++++ +++++|++| +++
T Consensus 3 ~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~v-vk~~vyl~d---~~d 78 (123)
T 2cwj_A 3 TAPKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDI-VKVTVYITD---ISR 78 (123)
T ss_dssp -CCCCCSSCCSCEEETTEEEEEEECCEEGGGTEECSSSSHHHHHHHHHHHHHHHHHTSCCGGGC-CEEEEEESS---SSH
T ss_pred CCCCCCCCcccEEEECCEEEEeccCCCCCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCHHHe-EEEEEEEcC---HHH
Confidence 4789999999999999999999999999987888789999999999999999999999999998 999999999 678
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 436 RLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 436 ~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
+..+++.|.+|| ++++|+|++++|+.||++++||||++|+++.
T Consensus 79 f~~~n~~~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 121 (123)
T 2cwj_A 79 FSEFNEVYREYF--------------NRPYPARAVVGVAALPLGAPLEVEAVLYTCR 121 (123)
T ss_dssp HHHHHHHHHTTC--------------CSSCCEEEEEECSCCGGGCSEEEEEECBC--
T ss_pred HHHHHHHHHHHc--------------CCCCCcEEEEEhhcCCCCCEEEEEEEEEeCC
Confidence 999999998887 3458999999999999999999999998754
No 18
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=99.92 E-value=1.3e-24 Score=207.67 Aligned_cols=130 Identities=21% Similarity=0.278 Sum_probs=113.7
Q ss_pred eeeeecccCCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEE
Q 005967 346 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVV 425 (667)
Q Consensus 346 ~~lhVqs~S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tv 425 (667)
..|...-.++++|+++||||||+++|+++|+|||+|++|.++.+ ++|+++|++++|+|+.++|+++|++++++ +++++
T Consensus 23 ~~M~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~v-~~d~~~Qt~~~l~nl~a~L~~aG~~l~~V-vk~tv 100 (153)
T 3vcz_A 23 NAMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEV-PADIAAQARQSLDNVKAVVEASGLTVGDI-VKMTV 100 (153)
T ss_dssp ---CEEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTTTCCC-CSSHHHHHHHHHHHHHHHHHTTTCCGGGE-EEEEE
T ss_pred cccceEEcCCCCCCCCCCcCCEEEECCEEEEeeecccCCCCCee-CcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEE
Confidence 33433334689999999999999999999999999999988887 47999999999999999999999999998 99999
Q ss_pred EEecCccchhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 426 YCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 426 Y~sd~~~~~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
|++| +.++..++++|.+||... ....+|+|++|+|..||++++||||++|++
T Consensus 101 yl~d---~~df~~~n~v~~~~f~~~----------~~~~~PArt~V~V~~L~~~~lVEIeaiA~~ 152 (153)
T 3vcz_A 101 FVKD---LNDFGTVNEVYGNFFDEH----------NVAHYPARSCVEVARLPKDVGIEIEAIAVR 152 (153)
T ss_dssp EESC---GGGHHHHHHHHHHHHHHT----------TCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred EEcC---chHHHHHHHHHHHHhCCC----------CCCCCCCEEEEEeccCCCCCEEEEEEEEEe
Confidence 9999 778999999999999621 012389999999999999999999999985
No 19
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.7e-24 Score=206.65 Aligned_cols=119 Identities=19% Similarity=0.236 Sum_probs=110.9
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++.+|+++|+||||+++|+++|+|||+|++|.+ .+.++|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 34 ~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~g-~~~~gdi~~Qt~~~l~Ni~a~L~~aG~~l~dV-Vkvtvyl~d---~ 108 (153)
T 3quw_A 34 TKLAPPAAASYSQAMKANNFVYVSGQIPYTPDN-KPVQGSISEKAEQVFQNVKNILAESNSSLDNI-VKVNVFLAD---M 108 (153)
T ss_dssp CTTSCCCCTTCCSEEEETTEEEEEEECSBCTTS-CBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCCCC-CCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---H
Confidence 477999999999999999999999999999964 56688999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEec
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 491 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~ 491 (667)
.++..++++|.+|| ++.+|+|++|+|+.||++++||||++|++|
T Consensus 109 ~df~~~n~v~~~~f--------------~~~~PArt~V~V~~L~~~~lVEIeaiA~~p 152 (153)
T 3quw_A 109 KNFAEFNSVYAKHF--------------HTHKPARSCVGVASLPLNVDLEMEVIAVEK 152 (153)
T ss_dssp GGHHHHHHHHHHHS--------------SSCCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEcccCCCCCEEEEEEEEEeC
Confidence 78999999999998 357899999999999999999999999976
No 20
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=99.91 E-value=6.2e-24 Score=199.55 Aligned_cols=120 Identities=13% Similarity=0.193 Sum_probs=108.9
Q ss_pred CCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchh
Q 005967 356 WAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSE 435 (667)
Q Consensus 356 wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d 435 (667)
.+|+++||||||+++|+++|+|||+|++|.++.+..++ .+|++++|+|+.++|+++|++++++ +++++|++| +.+
T Consensus 11 ~~p~p~g~ys~av~~g~~lfvSGq~~~d~~~g~~~~~~-~~Q~~~~l~ni~~~L~~aG~~l~~V-vk~~vyl~d---~~d 85 (138)
T 3lme_A 11 KTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGD-EARIRRMFDNMLAAAEAAGATKADA-VRLTVFVTD---VAK 85 (138)
T ss_dssp TSCCCCSSCBSEEEETTEEEEEEEESBCTTTCCBCSSH-HHHHHHHHHHHHHHHHTTTCCGGGE-EEEEEEESC---HHH
T ss_pred CCCCCCCCCCCEEEECCEEEEeccCCcCCCCCcCCcCH-HHHHHHHHHHHHHHHHHcCCCHHHe-EEEEEEECC---HHH
Confidence 38999999999999999999999999999888887654 7999999999999999999999998 999999999 778
Q ss_pred HH-HHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecCC
Q 005967 436 RL-KIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTDD 493 (667)
Q Consensus 436 ~~-~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d~ 493 (667)
+. .++++|.+||. +..+|+|++|+|+.||++++||||++|.++-+
T Consensus 86 ~~~~~n~v~~~~f~-------------~~~~PArt~v~V~~L~~~~lVEIe~iA~~~~~ 131 (138)
T 3lme_A 86 YRPVVNKVQKDIWG-------------DGPYPPRTVLQVPALDQGDIAEIDGTFYAPAE 131 (138)
T ss_dssp HHHHHHHHHHHHHT-------------TCCCCBEEEEECSCCGGGCSEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHcC-------------CCCCCCEEEEEcCcCCCCCEEEEEEEEEEccc
Confidence 85 78999999983 34789999999999999999999999997644
No 21
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=99.90 E-value=6.6e-24 Score=200.56 Aligned_cols=119 Identities=19% Similarity=0.139 Sum_probs=107.4
Q ss_pred CCCCCCcccccccCCEEEEeecccCCCCCCcccCC---CHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccch
Q 005967 358 PSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNG---GPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASS 434 (667)
Q Consensus 358 P~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~g---di~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~ 434 (667)
|+++|+||||+++|+++|+|||+|++|.+..+.++ ++.+|++++|+|+.++|+++|++++++ +++++|++| +.
T Consensus 14 ~~~~~~ys~av~~g~~l~vSGq~~~~~~g~~~~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~v-vk~~vyl~d---~~ 89 (144)
T 2ig8_A 14 DLPDASWSNALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGNL-YKLNVYVTR---IA 89 (144)
T ss_dssp CCTTCSSCSEEEETTEEEECCBCCTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---GG
T ss_pred CCCCCCcCCEEEECCEEEEeeeCCcCCCCcEecCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---hH
Confidence 78899999999999999999999999863333356 899999999999999999999999998 999999999 78
Q ss_pred hHHHHHHHHHHHH-HHhhhhhhhhhcccCCCCCeEEEEEcCCCCC-CCeEEEEEEEEecCC
Q 005967 435 ERLKIQEKLDAFL-KQMRVWHFEERSMSKVLDPIFLFVLASNLPK-SALVEIKPILYVTDD 493 (667)
Q Consensus 435 d~~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~-~AlVEIe~iA~v~d~ 493 (667)
++..+++.|.+|| . +.++|+|++|+|+.||+ +++|||+++|+++++
T Consensus 90 df~~~~~v~~~~f~~-------------~~~~PArt~v~V~~L~~p~~~VEIe~iA~~~~~ 137 (144)
T 2ig8_A 90 DKDAIGRARQEFFAG-------------QGTFPASTLVEVSGLVFPELLVEIDAWARLDID 137 (144)
T ss_dssp GHHHHHHHHHHHTTT-------------CSSCCEEEEEECSBCSSTTCCEEEEEEEETTCC
T ss_pred HHHHHHHHHHHHhcC-------------CCCCCCEEEEEecccCCCCCEEEEEEEEEeCCC
Confidence 8999999999998 3 45789999999999986 999999999998755
No 22
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=99.90 E-value=1.7e-23 Score=194.60 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=107.2
Q ss_pred CCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc-h
Q 005967 356 WAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS-S 434 (667)
Q Consensus 356 wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~-~ 434 (667)
++|.+.||||||+++|+++|+|||+|++|. +.+ .+|+++|++++|+|+.++|+++|++++++ +++++|++| + .
T Consensus 13 ~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-g~~-~~d~~~Q~~~~l~ni~~~L~~aG~~~~~v-vk~~vyl~d---~~~ 86 (131)
T 1pf5_A 13 HSLYAEHRYSAAIRSGDLLFVSGQVGSRED-GTP-EPDFQQQVRLAFDNLHATLAAAGCTFDDI-IDVTSFHTD---PEN 86 (131)
T ss_dssp CTTTTTTTCCSEEEETTEEEEEEECCBCTT-SCB-CSSHHHHHHHHHHHHHHHHHTTTCCGGGE-EEEEEEESS---GGG
T ss_pred cCCCCCCCcCCEEEECCEEEEcccCCcCCC-Ccc-CcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---cHH
Confidence 567789999999999999999999999986 666 47999999999999999999999999998 999999999 6 8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 435 ERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 435 d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
++..+++.|.+||. +.++|+|++|+|+.|| +++|||+++|++++
T Consensus 87 ~~~~~~~~~~~~f~-------------~~~~Part~v~V~~L~-~~~VEIe~iA~~~~ 130 (131)
T 1pf5_A 87 QFEDIMTVKNEIFS-------------APPYPNWTAVGVTWLA-GFDFEIKVIARIPE 130 (131)
T ss_dssp THHHHHHHHHHHSC-------------SSSCCCCEEEECSCST-TCSEEEEEEEECCC
T ss_pred hHHHHHHHHHHHcC-------------CCCCCCeEEEeecccC-CccEEEEEEEEeCC
Confidence 89999999999983 3578999999999999 99999999999864
No 23
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=99.88 E-value=3e-22 Score=185.81 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=100.7
Q ss_pred CCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHH
Q 005967 360 CIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKI 439 (667)
Q Consensus 360 ~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v 439 (667)
+.|+||||+++|+++|+|||+|++ ++|+++|++++|+|+.++|+++|++++++ +++++|+++ +.+++.+
T Consensus 16 ~~~~ys~av~~g~~lfvSGq~~~d-------~~d~~~Q~~~~l~nl~~~L~~aG~~l~~V-vk~tvyl~d---~~df~~~ 84 (128)
T 3kjj_A 16 TTPRYSEAVGANGLIFLSGMVPEN-------GETAAEQTADVLAQIDRWLAECGSDKAHV-LDAVIYLRD---MGDYAEM 84 (128)
T ss_dssp ECSSCEEEEEETTEEEECCBCCSS-------CSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---GGGHHHH
T ss_pred CCCCcCcEEEECCEEEEeecCCCC-------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---HHHHHHH
Confidence 467899999999999999999998 37899999999999999999999999998 999999999 7789999
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecC
Q 005967 440 QEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 492 (667)
Q Consensus 440 ~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d 492 (667)
+++|.+||+ +.++|+|++++|..||++++|||+++|.++|
T Consensus 85 n~v~~~~f~-------------~~~~PArt~v~v~ll~~~~lVEIe~iA~~~d 124 (128)
T 3kjj_A 85 NGVWDAWVA-------------AGRTPARACVEARLARPEWRVEIKITAVKRD 124 (128)
T ss_dssp HHHHHHHSC-------------TTCCCEEEEEECBCSSTTCCEEEEEEEECCC
T ss_pred HHHHHHHhC-------------CCCCCCEEEEEccccCCCCEEEEEEEEEecc
Confidence 999999983 3468999999998889999999999999875
No 24
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=99.87 E-value=2.1e-22 Score=191.41 Aligned_cols=114 Identities=19% Similarity=0.176 Sum_probs=104.1
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
++++|.+.|+||||+++|+++|+|||+|++ +|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 9 ~~~~~~~~~~YS~av~~G~~lfvSGq~~~~--------~d~~~Qt~~~l~ni~aiL~~aG~~l~dV-vk~tvyl~d---~ 76 (149)
T 3i7t_A 9 SGSEFESAVGYSRAVRIGPLVVVAGTTGSG--------DDIAAQTRDALRRIEIALGQAGATLADV-VRTRIYVTD---I 76 (149)
T ss_dssp CCCHHHHHHTCCSEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHHHccCCHhHE-EEEEEEECC---H
Confidence 477888899999999999999999999987 6899999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC-CCCeEEEEEEEEecCC
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP-KSALVEIKPILYVTDD 493 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP-~~AlVEIe~iA~v~d~ 493 (667)
.++..++++|.+||. +.+|+|++|+|+.|| ++++|||+++|++++.
T Consensus 77 ~df~~~n~v~~~~f~--------------~~~PArt~V~V~~L~~~~~lVEIe~iA~~~~~ 123 (149)
T 3i7t_A 77 SRWREVGEVHAQAFG--------------KIRPVTSMVEVTALIAPGLLVEIEADAYVGSA 123 (149)
T ss_dssp GGHHHHHHHHHHHHT--------------TTCCBCCEEECSCCSSTTCCEEEEEEEEC---
T ss_pred HHHHHHHHHHHHHcC--------------CCCCceEEEEeccCCCCCCEEEEEEEEEeCCc
Confidence 789999999999983 468999999999998 8999999999998754
No 25
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.1e-22 Score=194.54 Aligned_cols=122 Identities=20% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCCCCCCCCcccccccCCEEEEeecccCCCC----CCcccC----CCHHHHHHHHHHHHHHHHHHcC-CCCc---ceeEE
Q 005967 355 CWAPSCIGPYSQATLHKEVLQMAGQLGLDPP----TMTLCN----GGPTVELEQALQNSEAVAKCFN-CSIS---TSAIY 422 (667)
Q Consensus 355 ~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~----sm~l~~----gdi~~Q~~~aL~nl~aVL~aaG-~sl~---dv~V~ 422 (667)
+.+|+++||||||+++|+++|+|||+|++|+ ++.+.. +|+.+|++++|+|+.++|+++| ++++ ++ ++
T Consensus 26 ~~~p~p~g~Ys~av~~g~~lfvSGq~~~~~~~~~~~G~~~~~~~~~d~~~Qa~~~l~ni~~~L~~ag~~~l~~v~~V-vk 104 (165)
T 3d01_A 26 PVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQVKAALNGDLSKIRRV-IK 104 (165)
T ss_dssp CCC-----CBCSEEEETTEEEEEEECCEETTEECSBSCBTTTBCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGCCEE-EE
T ss_pred CCCCCCCCCccCEEEECCEEEEeeECCCCCCCccccccccCccCcccHHHHHHHHHHHHHHHHHHhCCCChhhhCCE-EE
Confidence 6689999999999999999999999999997 577754 5899999999999999999999 9999 77 99
Q ss_pred EEEEEecCccchhHHH-HH---HHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 423 FVVYCSTYVASSERLK-IQ---EKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 423 ~tvY~sd~~~~~d~~~-v~---~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
+++|+++..+....+. +| +.|.+||. +.++|+|++|+|+.||++++|||+++|.+
T Consensus 105 ~tvyv~d~~df~~~~~v~ngas~~~~~~f~-------------~~~~PArt~V~V~~Lp~~~~VEIe~iA~~ 163 (165)
T 3d01_A 105 LNGFVASVPEFVEQHLVINGASNLIATVLG-------------EPGRHARAAVGMASLPFNASVEIDAIVEI 163 (165)
T ss_dssp EEEEEEBCTTCCCHHHHHHHHHHHHHHHHC-------------GGGCBEEEEEEESBCGGGBSEEEEEEEEC
T ss_pred EEEEECCHHHhhHHHHHhhhHHHHHHHHhC-------------CCCCCceEEEEcccCCCCCEEEEEEEEEE
Confidence 9999999655554322 35 88988883 23589999999999999999999999986
No 26
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=99.87 E-value=1.1e-21 Score=184.78 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=101.5
Q ss_pred CCCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccch---hH
Q 005967 360 CIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASS---ER 436 (667)
Q Consensus 360 ~iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~---d~ 436 (667)
+.|+||||+++|+++|+|||+|++| ++.++. ++.+|++++|+|+.++|+++|++++++ +++++|++| +. ++
T Consensus 25 ~~~~ys~av~~g~~vfvSGq~~~d~-~g~~~~-~~~~Q~~~~l~nl~~~L~~aG~~~~~V-vk~~vyl~d---~~~~~df 98 (141)
T 3i3f_A 25 KFENVGQIAVVNGMVYLGGSVGIDK-SGTLHK-GLEEQTRQTFDNIRKCLEYANSGLDYI-VSLNIFLST---SLSDSEE 98 (141)
T ss_dssp CCTTCBCEEEETTEEEECCBCSBCT-TSCBCS-HHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEEET---TCCHHHH
T ss_pred CCCCcCcEEEECCEEEEeeeCCcCC-CCCCCc-CHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---CccccCH
Confidence 3499999999999999999999999 677764 599999999999999999999999998 999999999 55 89
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEec
Q 005967 437 LKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 491 (667)
Q Consensus 437 ~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~ 491 (667)
+.++++|.+||.. ++++|+|++++ ..||++++||||++|++.
T Consensus 99 ~~~n~v~~~~f~~------------~~~~Part~v~-~~L~~~~lVEIe~iA~~~ 140 (141)
T 3i3f_A 99 ARFNELYREVFCV------------PATRPCRCCVR-AQLQEGLLVEVVNVVAAQ 140 (141)
T ss_dssp HHHHHHHHHHSCC------------GGGCCEEEEEE-EBCSTTCSEEEEEEEEEC
T ss_pred HHHHHHHHHHhCC------------CCCCCcEEEEh-hhCCCCCEEEEEEEEEEc
Confidence 9999999999820 24689999999 999999999999999863
No 27
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=99.86 E-value=8.4e-22 Score=182.29 Aligned_cols=113 Identities=5% Similarity=-0.039 Sum_probs=103.7
Q ss_pred CCCCCCCC-CcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccc
Q 005967 355 CWAPSCIG-PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 433 (667)
Q Consensus 355 ~wAP~~iG-pYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~ 433 (667)
.|+|.+.| +||||+++|+++|+|||+|.. ++|+++|++++|+|++++|+++|++++++ +++++|++| +
T Consensus 5 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~~-------~~d~~~Q~~~~l~ni~~~L~~aG~~l~~V-vk~~vyl~d---~ 73 (126)
T 2ewc_A 5 RRYDVNEDRGHTGLVEAGDFYYLNYCVGNV-------GQDIESQINGAFDEMERRLALVGLTLDAV-VQMDCLFRD---V 73 (126)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEECCST-------TSCHHHHHHHHHHHHHHHHHTTTCCGGGE-EEEEEEESS---G
T ss_pred ccCCCCCCCCcccEEEECCEEEEeCcCCCC-------CcCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---h
Confidence 45788888 999999999999999999852 57899999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC----CCCeEEEEEEEEecC
Q 005967 434 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP----KSALVEIKPILYVTD 492 (667)
Q Consensus 434 ~d~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP----~~AlVEIe~iA~v~d 492 (667)
.+++.+++.|.+|| ++++|+|++++|+.|| ++++||||++|++++
T Consensus 74 ~df~~~n~v~~~~f--------------~~~~Part~v~v~~l~~~~~~~~lVEIe~iA~~~~ 122 (126)
T 2ewc_A 74 WNIPVMEKMIKERF--------------NGRYPARKSIQTEFAHHGGPQGLLFQVDGVAYSKH 122 (126)
T ss_dssp GGHHHHHHHHHHHS--------------TTCCCEEEEEECCCSSCCSTTCCCEEEEEEEECCC
T ss_pred hHHHHHHHHHHHHc--------------CCCCCcEEEEEccCccCCCCCCcEEEEEEEEEecc
Confidence 89999999999998 3478999999999899 999999999999865
No 28
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=99.86 E-value=6.1e-22 Score=189.32 Aligned_cols=123 Identities=13% Similarity=-0.004 Sum_probs=103.2
Q ss_pred CCCCCCCCCCcccccccCCEEEEeecccCCCC----CCcccC----CCHHHHHHHHHHHHHHHHHHcCCCCcc---eeEE
Q 005967 354 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPP----TMTLCN----GGPTVELEQALQNSEAVAKCFNCSIST---SAIY 422 (667)
Q Consensus 354 S~wAP~~iGpYSQAv~~g~~vfISGQIpl~P~----sm~l~~----gdi~~Q~~~aL~nl~aVL~aaG~sl~d---v~V~ 422 (667)
++.+|++.||||||+++|+++|+|||+|++|. ++.+.. +++.+|++++|.|+.++|+++|+++++ + |+
T Consensus 17 ~~~~~~~~g~Ys~av~~g~~v~vSGQ~~~~~~~~~~~G~~~~~~~~~~~~~Qa~~~~~Ni~a~L~~ag~~l~~~~~V-Vk 95 (154)
T 2otm_A 17 LPEVAAALGNYEPYSIVGSQLMTSGQFPYLQGKLLYQGQLGADYTVSEGYAACRLATLNAIAQLKQACGELSRIKQI-YR 95 (154)
T ss_dssp CCCCCCCSSSSCSEEEETTEEEECCBCCEETTEECCBSCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHSSGGGCCEE-EE
T ss_pred CCCCCCCCCCCcCEEEECCEEEEeccCCCCCCcccccccccCccCchhHHHHHHHHHHHHHHHHHHcCCCccccCcE-EE
Confidence 36688899999999999999999999999986 455532 347899999999999999999998876 7 99
Q ss_pred EEEEEecCccchhHHH----HHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 005967 423 FVVYCSTYVASSERLK----IQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 490 (667)
Q Consensus 423 ~tvY~sd~~~~~d~~~----v~~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v 490 (667)
+++|++|..++.+++. +++.|.+||. ..++|+|++|+|+.||++++||||++|.+
T Consensus 96 ~tvyv~d~~df~~~~~v~~~~~~~~~~~fg-------------~~~~PArt~v~V~~Lp~~~~VEIEaiA~~ 154 (154)
T 2otm_A 96 LEGVLNVHQSCIEHPKALDGASDLLLEIFG-------------EAGRHSRMIWTNPVMPLNSLCLVYLFAEL 154 (154)
T ss_dssp EEEEECBCTTCCCHHHHHHHHHHHHHHHHG-------------GGGCCEEEEEECSSCGGGBSEEEEEEEEC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHHHHHhC-------------CCCCCceEEEEccccCCCCEEEEEEEEEC
Confidence 9999999665555432 3577788873 23589999999999999999999999964
No 29
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=99.86 E-value=5.8e-22 Score=182.39 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=99.4
Q ss_pred CCCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHH
Q 005967 361 IGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQ 440 (667)
Q Consensus 361 iGpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~ 440 (667)
.++||||+++|+++|+|||+|++| ++|+++|++++|+|+.++|+++|++++++ +++++|++| +.+++.++
T Consensus 8 ~~~ys~av~~g~~vfvSGq~~~d~------~~d~~~Q~~~~l~ni~~~L~~aG~~~~~V-vk~tvyl~d---~~df~~~n 77 (122)
T 3k12_A 8 VKRRAEMALHGNTVYIGGQVADDP------SGDIQDQTRQILENIDRLLQSVGSDRGQV-LSVRILLAH---REDYAGLN 77 (122)
T ss_dssp EEEEEEEEEETTEEEEEEECCSST------TSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---GGGHHHHH
T ss_pred CCCcCCEEEECCEEEEeeccCCCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---chHHHHHH
Confidence 468999999999999999999997 47899999999999999999999999998 999999999 77899999
Q ss_pred HHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEecCC
Q 005967 441 EKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTDD 493 (667)
Q Consensus 441 ~~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~~AlVEIe~iA~v~d~ 493 (667)
++|.+||+ +..+|+|++|++..||++++|||+++|.++..
T Consensus 78 ~v~~~~f~-------------~~~~Part~v~~~ll~~~~lVEIe~iA~~~~~ 117 (122)
T 3k12_A 78 QVWDQWFP-------------EGRAPTRACSLAELIDPRWRVEMIVVAAREGH 117 (122)
T ss_dssp HHHTTTSC-------------TTCCCEEEEEECBCSSTTCSEEEEEEEECC--
T ss_pred HHHHHHhC-------------CCCCCCEEEEEcccCCCCCEEEEEEEEEeccc
Confidence 99988873 34789999999888899999999999987543
No 30
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=99.85 E-value=2.9e-21 Score=178.22 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCcccccccCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecCccchhHHHHHH
Q 005967 362 GPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQE 441 (667)
Q Consensus 362 GpYSQAv~~g~~vfISGQIpl~P~sm~l~~gdi~~Q~~~aL~nl~aVL~aaG~sl~dv~V~~tvY~sd~~~~~d~~~v~~ 441 (667)
||||||+++|+++|+|||+|++ ++|+++|++++|+|+.++|+++|++++++ +++++|++| +.+++.+++
T Consensus 12 ~~ys~av~~g~~lfvSGq~~~d-------~~d~~~Q~~~~l~nl~~~L~~aG~~~~~V-vk~tvyl~d---~~df~~~n~ 80 (124)
T 3gtz_A 12 DRWSDVVIYNNTLWYTGVPENL-------DADAFEQTANTLAQIDAVLEKQGSSKSRI-LDATIFLSD---KADFAAMNK 80 (124)
T ss_dssp SSCEEEEEETTEEEEEECCSCT-------TSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---GGGHHHHHH
T ss_pred CCcCCEEEECCEEEEeccCCCC-------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---HHHHHHHHH
Confidence 6899999999999999999998 47899999999999999999999999998 999999999 778999999
Q ss_pred HHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCC-CCeEEEEEEEEecCC
Q 005967 442 KLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPK-SALVEIKPILYVTDD 493 (667)
Q Consensus 442 ~~~~~f~~~~~~~~~~~~~~~~~~Part~V~Vs~LP~-~AlVEIe~iA~v~d~ 493 (667)
+|.+||+ +..+|+|++|+ ..||+ +++||||++|.++..
T Consensus 81 v~~~~f~-------------~~~~Part~v~-~~L~~p~~lVEIe~iA~~~~~ 119 (124)
T 3gtz_A 81 AWDAWVV-------------AGHAPVRCTVQ-AGLMNPKYKVEIKIVAAVEGH 119 (124)
T ss_dssp HHHHHSC-------------TTCCCEEEEEE-CEESSTTCSEEEEEEEEC---
T ss_pred HHHHHhC-------------CCCCCcEEEEe-cccCCCCCEEEEEEEEEeccc
Confidence 9999983 35789999999 77875 999999999987543
No 31
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=99.62 E-value=3.1e-15 Score=137.42 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.. ++|+|+||++.+++++. .+
T Consensus 32 ~~d~~~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~----~~Part~v~~~ll~~~~-lV 106 (122)
T 3k12_A 32 SGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEG----RAPTRACSLAELIDPRW-RV 106 (122)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTSCTT----CCCEEEEEECBCSSTTC-SE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCCC----CCCCEEEEEcccCCCCC-EE
Confidence 57999999999999999999999999999999999999999999999999999863 37999999988777665 58
Q ss_pred EEEeeeccc
Q 005967 334 YIEVLVAND 342 (667)
Q Consensus 334 ~iev~aa~~ 342 (667)
+||+++...
T Consensus 107 EIe~iA~~~ 115 (122)
T 3k12_A 107 EMIVVAARE 115 (122)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEec
Confidence 999887654
No 32
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=99.61 E-value=3.1e-15 Score=138.65 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+.. ++|+|+||++.+++++. .+
T Consensus 40 ~~d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~----~~PArt~v~v~ll~~~~-lV 114 (128)
T 3kjj_A 40 GETAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAG----RTPARACVEARLARPEW-RV 114 (128)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCTT----CCCEEEEEECBCSSTTC-CE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCCC----CCCCEEEEEccccCCCC-EE
Confidence 57999999999999999999999999999999999999999999999999999864 37999999998777664 58
Q ss_pred EEEeeecc
Q 005967 334 YIEVLVAN 341 (667)
Q Consensus 334 ~iev~aa~ 341 (667)
+||+++..
T Consensus 115 EIe~iA~~ 122 (128)
T 3kjj_A 115 EIKITAVK 122 (128)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99988764
No 33
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=99.60 E-value=3.9e-15 Score=137.22 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+.. ++|+|+||+ ..|+.+...+
T Consensus 34 ~~d~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~----~~Part~v~-~~L~~p~~lV 108 (124)
T 3gtz_A 34 DADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVAG----HAPVRCTVQ-AGLMNPKYKV 108 (124)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCTT----CCCEEEEEE-CEESSTTCSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCCC----CCCcEEEEe-cccCCCCCEE
Confidence 67999999999999999999999999999999999999999999999999999853 379999999 5565544568
Q ss_pred EEEeeeccc
Q 005967 334 YIEVLVAND 342 (667)
Q Consensus 334 ~iev~aa~~ 342 (667)
+||+++...
T Consensus 109 EIe~iA~~~ 117 (124)
T 3gtz_A 109 EIKIVAAVE 117 (124)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEEec
Confidence 999887644
No 34
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=99.60 E-value=7.8e-15 Score=135.53 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccc----cc
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLE----VG 329 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~----~~ 329 (667)
++|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.++ .+
T Consensus 35 ~~d~~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~df~~~n~v~~~~f~~~-----~Part~v~v~~l~~~~~~~ 109 (126)
T 2ewc_A 35 GQDIESQINGAFDEMERRLALVGLTLDAVVQMDCLFRDVWNIPVMEKMIKERFNGR-----YPARKSIQTEFAHHGGPQG 109 (126)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGHHHHHHHHHHHSTTC-----CCEEEEEECCCSSCCSTTC
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECChhHHHHHHHHHHHHcCCC-----CCcEEEEEccCccCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999864 6999999998887 44
Q ss_pred cceeEEEeeecc
Q 005967 330 LGKAYIEVLVAN 341 (667)
Q Consensus 330 ~~~v~iev~aa~ 341 (667)
..++||+++..
T Consensus 110 -~lVEIe~iA~~ 120 (126)
T 2ewc_A 110 -LLFQVDGVAYS 120 (126)
T ss_dssp -CCEEEEEEEEC
T ss_pred -cEEEEEEEEEe
Confidence 45899988764
No 35
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=99.58 E-value=1.3e-14 Score=135.24 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.++.+. .+
T Consensus 51 ~~d~~~Q~~~~l~nl~~~L~~aG~~l~~vvk~~vyl~d~~~f~~~n~v~~~~f~~~-----~Part~v~v~~l~~~~-~V 124 (134)
T 3v4d_A 51 ADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGD-----KPARFCIQCGLVKPDA-LV 124 (134)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSS-----CCEEEEEECBCSSTTC-CE
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHHHHHHHHHHHHcCCC-----CCcEEEEEccccCCCC-EE
Confidence 47899999999999999999999999999999999999999999999999999854 6999999998777654 58
Q ss_pred EEEeeecc
Q 005967 334 YIEVLVAN 341 (667)
Q Consensus 334 ~iev~aa~ 341 (667)
+||+++..
T Consensus 125 EIe~iA~~ 132 (134)
T 3v4d_A 125 EIATIAHI 132 (134)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 89888653
No 36
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=99.58 E-value=1.5e-14 Score=133.90 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+++++|++++|+||.++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++..|+.+ ..+
T Consensus 46 ~g~~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~d~~~~n~~~~~~f~~~-----~Part~v~v~~L~~~-~~V 119 (129)
T 1jd1_A 46 EGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTH-----KPARSCVAVAALPLG-VDM 119 (129)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSSS-----CCEEEEEECSBCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcChHHHHHHHHHHHHHcCCC-----CCcEEEEEeccCCCC-CEE
Confidence 46899999999999999999999999999999999999999999999999999874 699999999988754 458
Q ss_pred EEEeeecc
Q 005967 334 YIEVLVAN 341 (667)
Q Consensus 334 ~iev~aa~ 341 (667)
+||+++..
T Consensus 120 EIe~iA~~ 127 (129)
T 1jd1_A 120 EMEAIAAE 127 (129)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99987653
No 37
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-14 Score=138.59 Aligned_cols=82 Identities=18% Similarity=0.377 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|.+++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++..|+.+ ..+
T Consensus 70 ~gdi~~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtvyl~d~~df~~~n~v~~~~f~~~-----~PArt~V~V~~L~~~-~lV 143 (153)
T 3quw_A 70 QGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTH-----KPARSCVGVASLPLN-VDL 143 (153)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSSC-----CCEEEEEECSCCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCC-----CCcEEEEEcccCCCC-CEE
Confidence 57899999999999999999999999999999999999999999999999999854 699999999988854 458
Q ss_pred EEEeeecc
Q 005967 334 YIEVLVAN 341 (667)
Q Consensus 334 ~iev~aa~ 341 (667)
+||+++..
T Consensus 144 EIeaiA~~ 151 (153)
T 3quw_A 144 EMEVIAVE 151 (153)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99988753
No 38
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=99.57 E-value=8.8e-15 Score=139.00 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccceeE
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAY 334 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v~ 334 (667)
+|+++|++++|+||+.+|+++|++++||+++++||+||++|+.+|++|.+||+.. +|+|+||++..|+.....++
T Consensus 39 ~d~~~Qt~~~l~ni~aiL~~aG~~l~dVvk~tvyl~d~~df~~~n~v~~~~f~~~-----~PArt~V~V~~L~~~~~lVE 113 (149)
T 3i7t_A 39 DDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKI-----RPVTSMVEVTALIAPGLLVE 113 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHTTT-----CCBCCEEECSCCSSTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHccCCHhHEEEEEEEECCHHHHHHHHHHHHHHcCCC-----CCceEEEEeccCCCCCCEEE
Confidence 7999999999999999999999999999999999999999999999999999864 69999999988874445689
Q ss_pred EEeeecc
Q 005967 335 IEVLVAN 341 (667)
Q Consensus 335 iev~aa~ 341 (667)
||+++..
T Consensus 114 Ie~iA~~ 120 (149)
T 3i7t_A 114 IEADAYV 120 (149)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9988753
No 39
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=99.57 E-value=1.5e-14 Score=133.32 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||..+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++..|+.+ ..+
T Consensus 44 ~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~-----~Part~v~v~~L~~~-~~V 117 (126)
T 2dyy_A 44 KGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGES-----KPARVAVEVSRLPKD-VLI 117 (126)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECC-CCTTHHHHHHHHHHTTT-----CCEEEEEECSCCGGG-CSE
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCC-----CCcEEEEEcccCCCC-CEE
Confidence 37899999999999999999999999999999999999999999999999999875 599999999988754 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 118 EIe~iA~ 124 (126)
T 2dyy_A 118 EIEAIAY 124 (126)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8988764
No 40
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=99.57 E-value=2e-14 Score=134.48 Aligned_cols=83 Identities=23% Similarity=0.488 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||..+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 47 ~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~d~~~~n~~~~~~f~~~-----~Part~v~V~~L~~~-~~V 120 (136)
T 1qah_A 47 PGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGN-----LPARAAYQVAALPKG-SRI 120 (136)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCSS-----CCEEEEEECSCCGGG-CSE
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccCccHHHHHHHHHHHcCCC-----CCcEEEEEcccCCCC-CEE
Confidence 47899999999999999999999999999999999999999999999999999875 599999999988874 458
Q ss_pred EEEeeeccc
Q 005967 334 YIEVLVAND 342 (667)
Q Consensus 334 ~iev~aa~~ 342 (667)
+||+++...
T Consensus 121 EIe~iA~~~ 129 (136)
T 1qah_A 121 EIEAIAVQG 129 (136)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEEeC
Confidence 999887643
No 41
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=99.56 E-value=5.7e-15 Score=135.65 Aligned_cols=83 Identities=18% Similarity=0.446 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||..+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++..|+.+ ..+
T Consensus 38 ~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~df~~~n~~~~~~f~~~-----~Part~v~V~~L~~~-~~V 111 (123)
T 2cwj_A 38 EGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRP-----YPARAVVGVAALPLG-APL 111 (123)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHTSCCGGGCCEEEEEESSSSHHHHHHHHHHTTCCSS-----CCEEEEEECSCCGGG-CSE
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcCHHHHHHHHHHHHHHcCCC-----CCcEEEEEhhcCCCC-CEE
Confidence 47899999999999999999999999999999999999999999999999999875 599999999988754 458
Q ss_pred EEEeeeccc
Q 005967 334 YIEVLVAND 342 (667)
Q Consensus 334 ~iev~aa~~ 342 (667)
+||+++...
T Consensus 112 EIe~iA~~~ 120 (123)
T 2cwj_A 112 EVEAVLYTC 120 (123)
T ss_dssp EEEEECBC-
T ss_pred EEEEEEEeC
Confidence 999887643
No 42
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=99.56 E-value=1.6e-14 Score=133.63 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.+. ..+|+|+||+++.|+.+ ..+
T Consensus 43 ~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~~--~~~Part~v~v~~L~~~-~~V 119 (128)
T 1qu9_A 43 PADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHN--ATFPARSCVEVARLPKD-VKI 119 (128)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHHHTT--CCCCEEEEEECSBCGGG-CSE
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCCC--CCCCCEEEEEhhhCCCC-CEE
Confidence 479999999999999999999999999999999999999999999999999998751 12599999999988854 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 120 EIe~iA~ 126 (128)
T 1qu9_A 120 EIEAIAV 126 (128)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8988764
No 43
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=99.56 E-value=1.1e-14 Score=134.29 Aligned_cols=81 Identities=30% Similarity=0.476 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 43 ~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~v~~~~f~~~-----~Part~v~v~~L~~~-~~V 116 (125)
T 3l7q_A 43 GTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSD-----FPARSAVEVARLPKD-VKI 116 (125)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCSS-----CCEEEEEECSBCGGG-CSE
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCC-----CCcEEEEEcccCCCC-CEE
Confidence 57899999999999999999999999999999999999999999999999999874 699999999988855 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 117 EIe~iA~ 123 (125)
T 3l7q_A 117 EIEVIAE 123 (125)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888764
No 44
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=99.56 E-value=1.4e-14 Score=133.37 Aligned_cols=81 Identities=25% Similarity=0.429 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||..+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 42 ~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~-----~Part~v~v~~L~~~-~~V 115 (124)
T 1qd9_A 42 NGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTH-----KPARSCVEVARLPKD-ALV 115 (124)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSSC-----CCEEEEEECSBCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCCC-----CCCeEEEEcccCCCC-CEE
Confidence 37899999999999999999999999999999999999999999999999999875 599999999988754 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 116 EIe~iA~ 122 (124)
T 1qd9_A 116 EIEVIAL 122 (124)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888764
No 45
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=99.56 E-value=2.9e-14 Score=134.08 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||.++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 56 ~~d~~~Qt~~~l~ni~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~-----~PArt~V~V~~L~~~-~lV 129 (140)
T 2b33_A 56 QGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVFTTSMDYFQRVNEVYSRYFGDH-----RPARSFVAVAQLPRN-VEI 129 (140)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHTTT-----CCEEEEEECSCCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCchhHHHHHHHHHHHCCCC-----CCcEEEEEcccCCCC-CEE
Confidence 37899999999999999999999999999999999999999999999999999875 599999999988855 458
Q ss_pred EEEeeecc
Q 005967 334 YIEVLVAN 341 (667)
Q Consensus 334 ~iev~aa~ 341 (667)
+||+++..
T Consensus 130 EIe~iA~~ 137 (140)
T 2b33_A 130 EIEAIAVK 137 (140)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99988754
No 46
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=99.56 E-value=1.6e-14 Score=132.80 Aligned_cols=81 Identities=20% Similarity=0.366 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||.++|+++|.+++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 42 ~~~~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~~~~~~~~f~~~-----~Part~v~v~~L~~~-~~V 115 (124)
T 2cvl_A 42 EGDIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFLADMEDFPGFNEVYARYFTPP-----YPARATVAVKALPRG-VRV 115 (124)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSS-----CCEEEEEECSCCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCCC-----CCceEEEEcccCCCC-CEE
Confidence 47899999999999999999999999999999999999999999999999999875 599999999988754 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 116 EIe~iA~ 122 (124)
T 2cvl_A 116 EVACVAL 122 (124)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8988764
No 47
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=99.56 E-value=1.5e-14 Score=133.88 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+++++|++++|+||..+|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++..|+.+ ..+
T Consensus 46 ~~~~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~-----~Part~v~V~~L~~~-~~V 119 (128)
T 1x25_A 46 KGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDK-----PPARVTVEVSRLPKD-ALI 119 (128)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSS-----CCEEEEEECSCCGGG-CSE
T ss_pred CccHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCC-----CCCEEEEEcccCCCC-CEE
Confidence 47899999999999999999999999999999999999999999999999999875 599999999988854 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 120 EIe~iA~ 126 (128)
T 1x25_A 120 EIAVICS 126 (128)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8988764
No 48
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=99.55 E-value=3.7e-14 Score=130.96 Aligned_cols=81 Identities=15% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|.+++||+++++||+||++|+.+|++|.+||+.+ +|+|+||++..|+.+ ..+
T Consensus 46 ~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~~~v~~~~f~~~-----~Part~v~V~~L~~~-~~V 119 (127)
T 3r0p_A 46 EGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQAP-----YPARAAIGINQLPRA-SLI 119 (127)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSS-----CCEEEEEECSBCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCC-----CCcEEEEEcccCCCC-CEE
Confidence 36899999999999999999999999999999999999999999999999999865 599999999999865 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 120 EIe~iA~ 126 (127)
T 3r0p_A 120 EADGIMV 126 (127)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888753
No 49
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=99.55 E-value=3e-14 Score=134.44 Aligned_cols=80 Identities=18% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccceeE
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAY 334 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v~ 334 (667)
+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..++
T Consensus 62 ~d~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~-----~PArt~v~V~~Lp~~-~lVE 135 (143)
T 3k0t_A 62 EGIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFSQP-----YPARAAIGVAALPRG-AQVE 135 (143)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTCCSS-----CCEEEEEECSBCGGG-CSEE
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHHHHHHHcCCC-----CCcEEEEEcccCCCC-CEEE
Confidence 4899999999999999999999999999999999999999999999999999864 699999999999865 4589
Q ss_pred EEeeec
Q 005967 335 IEVLVA 340 (667)
Q Consensus 335 iev~aa 340 (667)
||+++.
T Consensus 136 Ie~iA~ 141 (143)
T 3k0t_A 136 MDAILV 141 (143)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988765
No 50
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=99.54 E-value=2.4e-14 Score=132.92 Aligned_cols=82 Identities=13% Similarity=0.295 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCc-ccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccce
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDM-NEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGK 332 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm-~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~ 332 (667)
.+|+++|++++|+||+.+|+++|++++||+++++||+|| ++|+.+|++|.+||+.. ++|+|+||++..|+ +. .
T Consensus 46 ~~d~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~~~~~~~~~~~~~~f~~~----~~Part~v~V~~L~-~~-~ 119 (131)
T 1pf5_A 46 EPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSAP----PYPNWTAVGVTWLA-GF-D 119 (131)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGTHHHHHHHHHHHSCSS----SCCCCEEEECSCST-TC-S
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCcHHhHHHHHHHHHHHcCCC----CCCCeEEEeecccC-Cc-c
Confidence 368999999999999999999999999999999999999 99999999999999753 26999999999988 44 5
Q ss_pred eEEEeeecc
Q 005967 333 AYIEVLVAN 341 (667)
Q Consensus 333 v~iev~aa~ 341 (667)
++||+++..
T Consensus 120 VEIe~iA~~ 128 (131)
T 1pf5_A 120 FEIKVIARI 128 (131)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEe
Confidence 899988754
No 51
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=2.7e-14 Score=134.65 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhc-CCCCCCCCCCcceEEeccccccccceeE
Q 005967 256 GLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFI-THEKCPCGVPSRSTIELPLLEVGLGKAY 334 (667)
Q Consensus 256 di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F-~~~~~~~~pPARt~V~v~~L~~~~~~v~ 334 (667)
++++|++++|+||.++|+++|.+++||+++++||+||++|+.+|++|.+|| +.. ++|+|+||+++.|+.+...++
T Consensus 52 d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~df~~~~~v~~~~f~~~~----~~PArt~v~V~~L~~p~~~VE 127 (144)
T 2ig8_A 52 DAHAQALVVLGKVKALLEAAGGHVGNLYKLNVYVTRIADKDAIGRARQEFFAGQG----TFPASTLVEVSGLVFPELLVE 127 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHTTTCS----SCCEEEEEECSBCSSTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECChHHHHHHHHHHHHHhcCCC----CCCCEEEEEecccCCCCCEEE
Confidence 899999999999999999999999999999999999999999999999999 332 369999999998876445689
Q ss_pred EEeeeccc
Q 005967 335 IEVLVAND 342 (667)
Q Consensus 335 iev~aa~~ 342 (667)
||+++...
T Consensus 128 Ie~iA~~~ 135 (144)
T 2ig8_A 128 IDAWARLD 135 (144)
T ss_dssp EEEEEETT
T ss_pred EEEEEEeC
Confidence 99887654
No 52
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=99.54 E-value=2.6e-14 Score=136.32 Aligned_cols=85 Identities=22% Similarity=0.421 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+... .+.+|+|+||++..|+.+ ..+
T Consensus 67 ~~d~~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~-~~~~PArt~V~V~~L~~~-~lV 144 (153)
T 3vcz_A 67 PADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHN-VAHYPARSCVEVARLPKD-VGI 144 (153)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHHHTT-CSSCCEEEEEECSBCGGG-CSE
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCCCC-CCCCCCEEEEEeccCCCC-CEE
Confidence 469999999999999999999999999999999999999999999999999998751 112699999999988874 468
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 145 EIeaiA~ 151 (153)
T 3vcz_A 145 EIEAIAV 151 (153)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998764
No 53
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=99.53 E-value=3e-14 Score=135.16 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+.+|+++|.+++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 67 ~~d~~~Q~~~~l~nl~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~fg~~-----~PArt~V~V~~L~~~-~lV 140 (148)
T 3m1x_A 67 GKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNH-----KPARACFAAAALPKG-ALV 140 (148)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHTTC-----CCEEEEEECSCCGGG-CSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCCC-----CCcEEEEEcccCCCC-CEE
Confidence 46899999999999999999999999999999999999999999999999999854 699999999988855 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 141 EIe~iA~ 147 (148)
T 3m1x_A 141 EVECIAT 147 (148)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888753
No 54
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=99.53 E-value=3.1e-14 Score=136.23 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 254 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 254 ~~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.|+.+ ..+
T Consensus 75 ~~d~~~Qt~~~l~ni~~iL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~-----~PArt~V~V~~Lp~~-~lV 148 (156)
T 1xrg_A 75 DGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAKVNEVYAKYFSEP-----YPARSCVEVSKLPKG-VLI 148 (156)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCSS-----CCEEEEEECSBCGGG-CSE
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECChHHHHHHHHHHHHHcCCC-----CCceEEEEcCCCCCC-CeE
Confidence 36899999999999999999999999999999999999999999999999999865 599999999988855 458
Q ss_pred EEEeeec
Q 005967 334 YIEVLVA 340 (667)
Q Consensus 334 ~iev~aa 340 (667)
+||+++.
T Consensus 149 EIe~iA~ 155 (156)
T 1xrg_A 149 EIEAVAI 155 (156)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8988764
No 55
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=99.50 E-value=1.3e-13 Score=129.19 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHH-HHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFA-VANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 333 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~-~vN~vY~~~F~~~~~~~~pPARt~V~v~~L~~~~~~v 333 (667)
.+..+|++++|+||+.+|+++|++++||+++++||+||++|. .+|++|.+||+.. .+|+|+||+++.|+.+. .+
T Consensus 46 ~~~~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~d~~~~~n~v~~~~f~~~----~~PArt~v~V~~L~~~~-lV 120 (138)
T 3lme_A 46 DGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDG----PYPPRTVLQVPALDQGD-IA 120 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCHHHHHHHHHHHHHHHHTTC----CCCBEEEEECSCCGGGC-SE
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHHHHHHHHHHHHHcCCC----CCCCEEEEEcCcCCCCC-EE
Confidence 355899999999999999999999999999999999999996 7999999999863 26999999999888654 68
Q ss_pred EEEeeeccc
Q 005967 334 YIEVLVAND 342 (667)
Q Consensus 334 ~iev~aa~~ 342 (667)
+||+++...
T Consensus 121 EIe~iA~~~ 129 (138)
T 3lme_A 121 EIDGTFYAP 129 (138)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEc
Confidence 999887643
No 56
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=99.49 E-value=6.2e-14 Score=135.32 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccc-c-ccccee
Q 005967 256 GLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLL-E-VGLGKA 333 (667)
Q Consensus 256 di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~dF~~vN~vY~~~F~~~~~~~~pPARt~V~v~~L-~-~~~~~v 333 (667)
++++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+.+ +|+|+||+++.| + .+ ..+
T Consensus 68 d~~~Qt~~~l~Ni~aiL~~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~~-----~PArt~V~V~~L~p~~~-~lV 141 (165)
T 3lyb_A 68 PILAQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQ-----PPVSTVVQVSEMLPDAT-VLI 141 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSSC-----CCEEEEEECSCCSSCTT-CCE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCCC-----CCceEEEEccccCCCCC-CEE
Confidence 899999999999999999999999999999999999999999999999999875 699999999988 6 44 458
Q ss_pred EEEeeeccc
Q 005967 334 YIEVLVAND 342 (667)
Q Consensus 334 ~iev~aa~~ 342 (667)
+||+++...
T Consensus 142 EIe~iA~~~ 150 (165)
T 3lyb_A 142 EVEATVWLP 150 (165)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEeC
Confidence 999887643
No 57
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=99.44 E-value=3.8e-13 Score=126.46 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEecCcc---cHHHHHHHHHHhcC-CCCCCCCCCcceEEecccccccc
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMN---EFAVANETYVKFIT-HEKCPCGVPSRSTIELPLLEVGL 330 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~dVv~vtvyL~Dm~---dF~~vN~vY~~~F~-~~~~~~~pPARt~V~v~~L~~~~ 330 (667)
+++++|++++|+||+.+|+++|++++||+++++||+||+ +|+.+|++|.+||+ .. ++|+|+||+ ..|+.+
T Consensus 55 ~~~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~~vyl~d~~~~~df~~~n~v~~~~f~~~~----~~Part~v~-~~L~~~- 128 (141)
T 3i3f_A 55 KGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPA----TRPCRCCVR-AQLQEG- 128 (141)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEETTCCHHHHHHHHHHHHHHSCCGG----GCCEEEEEE-EBCSTT-
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCCccccCHHHHHHHHHHHhCCCC----CCCcEEEEh-hhCCCC-
Confidence 359999999999999999999999999999999999999 99999999999995 32 369999999 888744
Q ss_pred ceeEEEeeecc
Q 005967 331 GKAYIEVLVAN 341 (667)
Q Consensus 331 ~~v~iev~aa~ 341 (667)
..++||+++..
T Consensus 129 ~lVEIe~iA~~ 139 (141)
T 3i3f_A 129 LLVEVVNVVAA 139 (141)
T ss_dssp CSEEEEEEEEE
T ss_pred CEEEEEEEEEE
Confidence 46899988653
No 58
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=99.31 E-value=1.3e-12 Score=124.61 Aligned_cols=81 Identities=7% Similarity=0.070 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCc---EEEEEEEecCcccHHHH-------HHHHHHhcCCCCCCCCCCcceEEecc
Q 005967 255 AGLLDDLRVVLKQIESKLVRYGFDWGH---VLYIHLYISDMNEFAVA-------NETYVKFITHEKCPCGVPSRSTIELP 324 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG~sl~d---Vv~vtvyL~Dm~dF~~v-------N~vY~~~F~~~~~~~~pPARt~V~v~ 324 (667)
+++++|++++|.||..+|+++|.++++ |+++++||+||++|..+ |++|.+||+.. ++|||+||++.
T Consensus 63 ~~~~~Qa~~~~~Ni~a~L~~ag~~l~~~~~VVk~tvyv~d~~df~~~~~v~~~~~~~~~~~fg~~----~~PArt~v~V~ 138 (154)
T 2otm_A 63 SEGYAACRLATLNAIAQLKQACGELSRIKQIYRLEGVLNVHQSCIEHPKALDGASDLLLEIFGEA----GRHSRMIWTNP 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSGGGCCEEEEEEEEECBCTTCCCHHHHHHHHHHHHHHHHGGG----GCCEEEEEECS
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCccccCcEEEEEEEECCcHHHHHHHHHHHHHHHHHHHHhCCC----CCCceEEEEcc
Confidence 458999999999999999999999875 99999999999998775 58999999864 25999999999
Q ss_pred ccccccceeEEEeeec
Q 005967 325 LLEVGLGKAYIEVLVA 340 (667)
Q Consensus 325 ~L~~~~~~v~iev~aa 340 (667)
.|+.+ ..++||+++.
T Consensus 139 ~Lp~~-~~VEIEaiA~ 153 (154)
T 2otm_A 139 VMPLN-SLCLVYLFAE 153 (154)
T ss_dssp SCGGG-BSEEEEEEEE
T ss_pred ccCCC-CEEEEEEEEE
Confidence 99865 4689988763
No 59
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=99.30 E-value=1.6e-12 Score=125.45 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC-CCcC---cEEEEEEEecCcccHHH----HH---HHHHHhcCCCCCCCCCCcceEEec
Q 005967 255 AGLLDDLRVVLKQIESKLVRYG-FDWG---HVLYIHLYISDMNEFAV----AN---ETYVKFITHEKCPCGVPSRSTIEL 323 (667)
Q Consensus 255 ~di~eQt~~vl~nL~~~L~~aG-~sl~---dVv~vtvyL~Dm~dF~~----vN---~vY~~~F~~~~~~~~pPARt~V~v 323 (667)
+++++|++++|+||.++|+++| .+++ ||+++++||+||++|+. +| ++|.+||+.. ++|+|+||++
T Consensus 71 ~d~~~Qa~~~l~ni~~~L~~ag~~~l~~v~~Vvk~tvyv~d~~df~~~~~v~ngas~~~~~~f~~~----~~PArt~V~V 146 (165)
T 3d01_A 71 ASAQRAAELCAVNILAQVKAALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEP----GRHARAAVGM 146 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCGGGCCEEEEEEEEEEBCTTCCCHHHHHHHHHHHHHHHHCGG----GCBEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCChhhhCCEEEEEEEECCHHHhhHHHHHhhhHHHHHHHHhCCC----CCCceEEEEc
Confidence 4899999999999999999999 9999 99999999999999988 68 9999999874 2699999999
Q ss_pred cccccccceeEEEeeec
Q 005967 324 PLLEVGLGKAYIEVLVA 340 (667)
Q Consensus 324 ~~L~~~~~~v~iev~aa 340 (667)
+.|+.+ ..++||+++.
T Consensus 147 ~~Lp~~-~~VEIe~iA~ 162 (165)
T 3d01_A 147 ASLPFN-ASVEIDAIVE 162 (165)
T ss_dssp SBCGGG-BSEEEEEEEE
T ss_pred ccCCCC-CEEEEEEEEE
Confidence 998764 4588988765
No 60
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=92.75 E-value=0.045 Score=60.43 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhc--CCEEeecC----c-c--CCHHHHHHHHHHCCCeEEEEEE
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL--GLVSLAYL----W-K--QDQSLLLQEMITNGINAITVKV 89 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~l--gl~~l~pL----W-~--~~~~~ll~em~~~g~~a~ii~V 89 (667)
++..|.++.++. |+++|+.|.....+...|++..+..+ ++..++|| | . ..++++++-..+.|+.....+-
T Consensus 109 i~~~l~e~A~e~-Gad~IAtGht~kgnDq~rf~~~~~al~p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~ 187 (455)
T 1k92_A 109 TGTMLVAAMKED-GVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVE 187 (455)
T ss_dssp HHHHHHHHHHHT-TCCEEECCCCTTSSHHHHHHHHHHHHCTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHHc-CCCEEEECCcCCCCCHHHHHHHHHhcCCCCEEECeeccccccccCCCHHHHHHHHHHcCCCcccCCC
Confidence 456677777776 99999999986533334666666666 89999999 4 2 6899999999999999876555
Q ss_pred eCCCCCCccccCccccc-chHHHHHh------------------hhhcCCccccCCceeEEEeecCCCCCCceeEE
Q 005967 90 AAMGLEPGKHLGKEIAF-LDPYLHKL------------------KESYGINVCGEGGEYETLTLDCPLFVNARIVL 146 (667)
Q Consensus 90 ~~~gL~~~~~lG~~l~~-~~~~l~~l------------------~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i 146 (667)
..+..|. .+||+++.. ..+.+... .+.+.+.+.+|+|+.. ++||+.|+. ++.+
T Consensus 188 ~pyS~d~-nl~g~s~e~g~ledp~~~~~~~~~~~~~~~~p~~ap~~p~~v~i~Fe~G~pv--~~ng~~~~~-~~~l 259 (455)
T 1k92_A 188 KAYSTDS-NMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPV--ALNGKTFSD-DVEM 259 (455)
T ss_dssp CSSEEEE-ETTEEEEESGGGGSTTCCGGGCCCSSSCCTTCTTSCCCCEEEEEEEETTEEE--EETTBCCSS-HHHH
T ss_pred CCCccCC-ceEEEEeecccccCccccccccCCcchhhcChhhCCCCCeEEEEEEEccEEE--eecCcccCC-HHHH
Confidence 5566775 588888774 11111111 1245678888888887 678888853 4443
No 61
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=84.89 E-value=2.8 Score=41.87 Aligned_cols=96 Identities=20% Similarity=0.126 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccH-----HHHHHHHHhhhhcCCEEe-ecCc--cCCHHHHHHHHHHCCCeE
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASD-----YQRLRVESVCSRLGLVSL-AYLW--KQDQSLLLQEMITNGINA 84 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~-----yqr~rve~vc~~lgl~~l-~pLW--~~~~~~ll~em~~~g~~a 84 (667)
.+|++-|.+-++.+|+. |++|||+|++-.+ .+-.++-..|..+.++-. ++=. ..|+.+-++.+++.||+-
T Consensus 72 ~~E~~~M~~Di~~~~~~--GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~r 149 (224)
T 2bdq_A 72 DLELRIMEEDILRAVEL--ESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTR 149 (224)
T ss_dssp HHHHHHHHHHHHHHHHT--TCSEEEECCBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEeeECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCE
Confidence 46899999999999887 9999999998743 222233344554444422 1111 278999999999999999
Q ss_pred EEEEEeCCCCCCccccCcccccchHHHHHhhhhc
Q 005967 85 ITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESY 118 (667)
Q Consensus 85 ~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~ 118 (667)
|+++ |..+ +....+-.+.|.+|.+++
T Consensus 150 ILTS----G~~~----~~~a~~g~~~L~~Lv~~a 175 (224)
T 2bdq_A 150 ILLH----GSSN----GEPIIENIKHIKALVEYA 175 (224)
T ss_dssp EEEC----SCSS----CCCGGGGHHHHHHHHHHH
T ss_pred EECC----CCCC----CCcHHHHHHHHHHHHHhh
Confidence 9964 3221 122333356677776543
No 62
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=81.72 E-value=5.3 Score=40.69 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccH--HHHHHHHH---hhhhcCCEEe-ecCccCCHHHHHHHHHHCCCeEEE
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASD--YQRLRVES---VCSRLGLVSL-AYLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~--yqr~rve~---vc~~lgl~~l-~pLW~~~~~~ll~em~~~g~~a~i 86 (667)
.+|++-|.+-++.+|+. |++|||+|++-.+ --+.+.++ .|..+.++-+ +.=.-.|+.+-|+.+++.||+-|+
T Consensus 69 ~~E~~~M~~Di~~~~~~--GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rIL 146 (256)
T 1twd_A 69 DGEFAAILEDVRTVREL--GFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVL 146 (256)
T ss_dssp HHHHHHHHHHHHHHHHT--TCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEeeECCCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEE
Confidence 46899999999999887 9999999999753 12223333 3443332221 111125899999999999999999
Q ss_pred EEEeCCCCCCccccCcccccchHHHHHhhh
Q 005967 87 VKVAAMGLEPGKHLGKEIAFLDPYLHKLKE 116 (667)
Q Consensus 87 i~V~~~gL~~~~~lG~~l~~~~~~l~~l~~ 116 (667)
++ |..+. ..+-.+.|.+|.+
T Consensus 147 TS----G~~~~------a~~g~~~L~~Lv~ 166 (256)
T 1twd_A 147 TS----GQKSD------ALQGLSKIMELIA 166 (256)
T ss_dssp EC----TTSSS------TTTTHHHHHHHHT
T ss_pred CC----CCCCC------HHHHHHHHHHHHH
Confidence 53 32221 2222567777765
No 63
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=80.62 E-value=4.1 Score=42.20 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccH--HHHHHHHH---hhhhcCCEEeecCcc--CCHHHHHHHHHHCCCeEE
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASD--YQRLRVES---VCSRLGLVSLAYLWK--QDQSLLLQEMITNGINAI 85 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~--yqr~rve~---vc~~lgl~~l~pLW~--~~~~~ll~em~~~g~~a~ 85 (667)
.+|++-|..-++.+++. |+++||+|.+-.+ -...+.++ .+..++++-. +-.. .|+.+-++.+++.||+-|
T Consensus 107 ~~E~~~M~~dI~~~~~~--GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTFH-RAFD~~~d~~~Ale~Li~lGvdrI 183 (287)
T 3iwp_A 107 DREIEVMKADIRLAKLY--GADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFH-RAFDMVHDPMAALETLLTLGFERV 183 (287)
T ss_dssp HHHHHHHHHHHHHHHHT--TCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCEEEC-GGGGGCSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEEE-CchhccCCHHHHHHHHHHcCCCEE
Confidence 47899999999999887 9999999976543 22233333 3444555532 2223 379999999999999999
Q ss_pred EEEEeCCCCCCccccCcccccchHHHHHhhhhcC
Q 005967 86 TVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYG 119 (667)
Q Consensus 86 ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g 119 (667)
++ +.+ .+. - ++ -.+.|.+|.++++
T Consensus 184 LT---SG~-~~~-a----~~-Gl~~Lk~Lv~~a~ 207 (287)
T 3iwp_A 184 LT---SGC-DSS-A----LE-GLPLIKRLIEQAK 207 (287)
T ss_dssp EE---CTT-SSS-T----TT-THHHHHHHHHHHT
T ss_pred EC---CCC-CCC-h----HH-hHHHHHHHHHHhC
Confidence 99 233 222 1 11 1466777776544
No 64
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=80.25 E-value=1.3 Score=47.93 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhCCCceEEEEccccc-HHHHHHHHHhhhhc--CCEEeecCccC---CHHHHHHHHHHCCCeEEEEEEeCC
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRL--GLVSLAYLWKQ---DQSLLLQEMITNGINAITVKVAAM 92 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s-~yqr~rve~vc~~l--gl~~l~pLW~~---~~~~ll~em~~~g~~a~ii~V~~~ 92 (667)
++..|.++.+++ |+++|++|+... +.|... +.-+..+ ++..++||+.. +.+++++-+...|+.....+....
T Consensus 95 ~~~~L~~~A~~~-G~~~IatG~~~d~nDq~~f-~~g~~~l~p~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~py 172 (400)
T 1kor_A 95 IAKHLVRIAEEE-GAEAIAHGATGKGNDQVRF-ELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPY 172 (400)
T ss_dssp HHHHHHHHHHHH-TCSEEECCCCTTSSHHHHH-HHHHHHHCTTCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----CC
T ss_pred HHHHHHHHHHHc-CCCEEEECCCCCcccHHHH-HHHHHhcCCCCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCCC
Confidence 345666666666 999999999986 566443 2223344 78999999776 999999999999999987766667
Q ss_pred CCCCccccCcccccchHHHHHhh
Q 005967 93 GLEPGKHLGKEIAFLDPYLHKLK 115 (667)
Q Consensus 93 gL~~~~~lG~~l~~~~~~l~~l~ 115 (667)
..|. .+||++.. ...|.++.
T Consensus 173 s~d~-nllg~s~e--~~~Led~~ 192 (400)
T 1kor_A 173 SMDA-NLLHISYE--GGVLEDPW 192 (400)
T ss_dssp EEEE-CSSCEEEE--SGGGGCTT
T ss_pred cCcc-hhcccchh--hhHHHhHH
Confidence 7776 58999886 34444433
No 65
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=67.32 E-value=2.3 Score=46.26 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=63.0
Q ss_pred HHHHHHHHhhCCCceEEEEccccc-HHHHHHHHHhhhhc--CCEEeecCc------cC-CHHHHHHHHHHCCCeEEEEEE
Q 005967 20 YILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRL--GLVSLAYLW------KQ-DQSLLLQEMITNGINAITVKV 89 (667)
Q Consensus 20 ~~~L~~~k~~~p~v~~v~~GaI~s-~yqr~rve~vc~~l--gl~~l~pLW------~~-~~~~ll~em~~~g~~a~ii~V 89 (667)
+..|.++.+++ |+++|++|.... +.|.. .+--+..+ ++..+.||| .. .++++++-..+.|+.....+.
T Consensus 100 ~~~l~~~A~~~-Ga~~IatGh~~~~nDq~r-f~lg~~~l~p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~ 177 (413)
T 2nz2_A 100 ARKQVEIAQRE-GAKYVSHGATGKGNDQVR-FELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPK 177 (413)
T ss_dssp HHHHHHHHHHH-TCSEEECCCCTTSSHHHH-HHHHHHHHCTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCC
T ss_pred HHHHHHHHHHc-CCCEEEECCcCcccchHH-HHHHHHhcCCCCceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCC
Confidence 45565665555 999999999975 55643 23222223 799999999 66 888999999999999876555
Q ss_pred eCCCCCCccccCcccccchHHHHHhh
Q 005967 90 AAMGLEPGKHLGKEIAFLDPYLHKLK 115 (667)
Q Consensus 90 ~~~gL~~~~~lG~~l~~~~~~l~~l~ 115 (667)
...-.|. .+||+++. ...|.++.
T Consensus 178 ~~~S~d~-n~~g~s~e--~~~Led~~ 200 (413)
T 2nz2_A 178 NPWSMDE-NLMHISYE--AGILENPK 200 (413)
T ss_dssp CSSCEEE-CSSCEEEC--SGGGGSTT
T ss_pred CCCCCCh-hhhhcchh--hhhhhchh
Confidence 5566665 58898887 34454443
No 66
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=67.22 E-value=7.2 Score=33.25 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCC
Q 005967 14 DEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQD 69 (667)
Q Consensus 14 dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~ 69 (667)
++..+++..|..++.. .=+-+.|=.-++.+||..|-.+|.++||..-+.=.+.+
T Consensus 16 ~~~~~i~~~l~~F~~~--~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G~G~~ 69 (86)
T 1msz_A 16 DGVDHFRAMIVEFMAS--KKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKR 69 (86)
T ss_dssp -CCHHHHHHHHHHHHH--TCSEEEECTTCCSHHHHHHHHHHHHTTEEEEEECSSSC
T ss_pred hhHHHHHHHHHHHhcC--CCcEEEcCCCCCHHHHHHHHHHHHHcCCCcceeeCCCC
Confidence 5677888999998865 55889999999999999999999999999877654443
No 67
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=65.01 E-value=0.84 Score=49.07 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=44.9
Q ss_pred HHHHhhCCCceEEEEcccccHHHHHHHHHhhhhc-----------------CCEEeecCccCCHHHHHHHHHHCCCeEEE
Q 005967 24 NEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL-----------------GLVSLAYLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 24 ~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~l-----------------gl~~l~pLW~~~~~~ll~em~~~g~~a~i 86 (667)
+.+++++ |++.|++|..+.+...+...+.+... ....++|||.....++.+...+.|+.. .
T Consensus 125 ~~A~~~~-Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~-~ 202 (380)
T 2der_A 125 EFAAEDL-GADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVT-A 202 (380)
T ss_dssp HHHHHTT-CCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC---
T ss_pred HHHHhhc-CCCEEEEccccccccccchHHHhcccccccccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCC-c
Confidence 3334425 89999999876532111001111111 147899999999999999999999983 3
Q ss_pred EEEeCCCCCCccccCcccccchHHHHHhh
Q 005967 87 VKVAAMGLEPGKHLGKEIAFLDPYLHKLK 115 (667)
Q Consensus 87 i~V~~~gL~~~~~lG~~l~~~~~~l~~l~ 115 (667)
.|-.+.++ -++|+. ...++|.++.
T Consensus 203 ~kp~s~~~---cf~~~~--~~~~fL~~~~ 226 (380)
T 2der_A 203 KKKDSTGI---CFIGER--KFREFLGRYL 226 (380)
T ss_dssp -------------------CHHHHHHTTS
T ss_pred cCCCCCCc---cccCch--HHHHHHHHhh
Confidence 33334443 367775 2366776643
No 68
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=60.85 E-value=6.8 Score=42.30 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhh---hhcCCEEeecCccCCHHHHHHHHHHCCC
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVC---SRLGLVSLAYLWKQDQSLLLQEMITNGI 82 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc---~~lgl~~l~pLW~~~~~~ll~em~~~g~ 82 (667)
++..+.++.+++ |++++++|..+.+..-+.+.+++ ...|+..+.|||+.+..++.+-..+.|+
T Consensus 278 ~~~~~~~~A~~~-g~~~I~tG~~~dD~ae~~l~~l~~~~~~~~~~virPL~~l~K~eI~~~a~~~Gl 343 (413)
T 2c5s_A 278 MMRITERIAEER-NALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGT 343 (413)
T ss_dssp HHHHHHHHHHHT-TCCEEECCCCSSSTTSCCHHHHHHHGGGCCSCEECTTTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc-CCCEEEEcccchhhHHHHHHHHhcccccCCCEEEeccCCCCHHHHHHHHHHcCC
Confidence 455666777777 89999999876543222344544 3468899999999999999999999986
No 69
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=60.59 E-value=0.66 Score=49.78 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCceEEEEcccccHHH-HHHHHHhhhhc-----------------CCEEeecCccCCHHHHHHHHHHCCC
Q 005967 21 ILLNEVKRQIPSVTAVSSGAIASDYQ-RLRVESVCSRL-----------------GLVSLAYLWKQDQSLLLQEMITNGI 82 (667)
Q Consensus 21 ~~L~~~k~~~p~v~~v~~GaI~s~yq-r~rve~vc~~l-----------------gl~~l~pLW~~~~~~ll~em~~~g~ 82 (667)
.+|.+...++ |++.|++|..+.+.. +....+++..+ ....++|||.....++.+-..+.|+
T Consensus 113 ~~l~~~A~~~-G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl 191 (376)
T 2hma_A 113 KAFLDYAITL-GADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGL 191 (376)
T ss_dssp THHHHHHHTT-TCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-CCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCC
Confidence 3455555555 999999999776532 11111122222 1578999999999999766668999
Q ss_pred eEEEEEEeCCCCCCccccCcccccchHHHHHhh
Q 005967 83 NAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLK 115 (667)
Q Consensus 83 ~a~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~ 115 (667)
.. +.|-.+.++ -|+|+.- ..++|.++.
T Consensus 192 ~~-~~k~~s~~~---cf~~~~~--~~~fL~~~~ 218 (376)
T 2hma_A 192 ST-AKKKDSTGI---CFIGEKN--FKNFLSNYL 218 (376)
T ss_dssp TT-TTCCCCCSC---TTTTTSC--HHHHHHTTS
T ss_pred Cc-ccCCCCCCc---cccCchh--HHHHHHHHh
Confidence 73 223334443 3777643 356776543
No 70
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=56.83 E-value=9.9 Score=36.34 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=52.2
Q ss_pred HH-HHHHHHHhhCCCceEEEEcccccHHH---H------HHHHHh---hhhcCCEEeecCccCCHHHHHHHHHHCCC-eE
Q 005967 19 MY-ILLNEVKRQIPSVTAVSSGAIASDYQ---R------LRVESV---CSRLGLVSLAYLWKQDQSLLLQEMITNGI-NA 84 (667)
Q Consensus 19 l~-~~L~~~k~~~p~v~~v~~GaI~s~yq---r------~rve~v---c~~lgl~~l~pLW~~~~~~ll~em~~~g~-~a 84 (667)
++ .++.++.+++ |++.|++|....+.. . ...... ...-++..+.|||..+..++.+-..+.|+ +.
T Consensus 100 ~~~~~~~~~a~~~-g~~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~PL~~~~K~ei~~~a~~~glp~~ 178 (219)
T 3bl5_A 100 VFLSFASILAYQI-GARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKLADELGALDF 178 (219)
T ss_dssp HHHHHHHHHHHHH-TCSEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHc-CCCEEEEeccccccCCCCCCCHHHHHHHHHHHHhccCCCeEEEeccccCCHHHHHHHHHHcCCCcc
Confidence 44 4656666666 899999999875521 1 122222 12358899999999999999999999998 44
Q ss_pred EEEEEeCCCCCCc-cccCc
Q 005967 85 ITVKVAAMGLEPG-KHLGK 102 (667)
Q Consensus 85 ~ii~V~~~gL~~~-~~lG~ 102 (667)
++-..-+-.++.. .+.|+
T Consensus 179 ~~~~t~sc~~~~~~~~CG~ 197 (219)
T 3bl5_A 179 VKNNTLTCYNGIIADGCGE 197 (219)
T ss_dssp HHHHCCCSTTSCCSSCCSC
T ss_pred chhheeeccCCCCCCCCCC
Confidence 4444333333322 36663
No 71
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=54.10 E-value=25 Score=34.50 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=47.5
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCC----EEeecC------------ccC----CHHHHHHHHHHCCCeEEEEE-Ee
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGL----VSLAYL------------WKQ----DQSLLLQEMITNGINAITVK-VA 90 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl----~~l~pL------------W~~----~~~~ll~em~~~g~~a~ii~-V~ 90 (667)
|+++|+.|.-+... ..+++++++.+|. ..+.+. |.. +..++++++.+.|++.+++. +.
T Consensus 96 Gad~V~lg~~~l~~-p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~ 174 (253)
T 1thf_D 96 GADKVSINTAAVEN-PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSID 174 (253)
T ss_dssp TCSEEEESHHHHHC-THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETT
T ss_pred CCCEEEEChHHHhC-hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEecc
Confidence 66777777655321 1244555555552 344443 554 57788888888998877763 33
Q ss_pred CCCCCCccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 91 AMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 91 ~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
..|- .-| ++ .+.+.++.+..++-+..+||
T Consensus 175 ~~g~----~~g--~~--~~~~~~l~~~~~ipvia~GG 203 (253)
T 1thf_D 175 RDGT----KSG--YD--TEMIRFVRPLTTLPIIASGG 203 (253)
T ss_dssp TTTS----CSC--CC--HHHHHHHGGGCCSCEEEESC
T ss_pred CCCC----CCC--CC--HHHHHHHHHhcCCCEEEECC
Confidence 2221 122 23 45666666544444444444
No 72
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=49.93 E-value=41 Score=32.37 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=32.3
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCC----------------EEeecCcc----CCHHHHHHHHHHCCCeEEEEE
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGL----------------VSLAYLWK----QDQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl----------------~~l~pLW~----~~~~~ll~em~~~g~~a~ii~ 88 (667)
|+++|..|.-+.. .-.++.+++.++|. ......|. .+..++++.+.+.|.+.+++-
T Consensus 99 Gad~V~i~~~~~~-~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~ 174 (253)
T 1h5y_A 99 GADKVSVNTAAVR-NPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLT 174 (253)
T ss_dssp TCSEEEESHHHHH-CTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CCCEEEEChHHhh-CcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEe
Confidence 5566665543321 12345566666552 33344554 456777888888888887663
No 73
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=48.32 E-value=56 Score=32.18 Aligned_cols=89 Identities=11% Similarity=0.093 Sum_probs=50.8
Q ss_pred CceEEEEcccccH--HHHHHHHHhhhhcC--C----EEeecC------------cc----CCHHHHHHHHHHCCCeEEEE
Q 005967 32 SVTAVSSGAIASD--YQRLRVESVCSRLG--L----VSLAYL------------WK----QDQSLLLQEMITNGINAITV 87 (667)
Q Consensus 32 ~v~~v~~GaI~s~--yqr~rve~vc~~lg--l----~~l~pL------------W~----~~~~~ll~em~~~g~~a~ii 87 (667)
|+++|+.|..+.+ +.-.++++++.+.| . ..+.+. |. .+..++++++.+.|...+++
T Consensus 96 Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~ 175 (266)
T 2w6r_A 96 GADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILL 175 (266)
T ss_dssp TCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEE
T ss_pred CCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEE
Confidence 7888888887652 24456677777776 3 233332 44 35778888888999998887
Q ss_pred E-EeCCCCCCccccCcccccchHHHHHhhhhcCCccccCCce
Q 005967 88 K-VAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGE 128 (667)
Q Consensus 88 ~-V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGE 128 (667)
. +...|- .-|- + .+.+.++.+..++-+..+||=
T Consensus 176 t~~~~~g~----~~g~--~--~~~i~~l~~~~~ipvia~GGI 209 (266)
T 2w6r_A 176 TSIDRDGT----KSGY--D--TEMIRFVRPLTTLPIIASGGA 209 (266)
T ss_dssp EETTTTTT----CSCC--C--HHHHHHHGGGCCSCEEEESCC
T ss_pred EeecCCCC----cCCC--C--HHHHHHHHHHcCCCEEEeCCC
Confidence 3 222331 2232 2 456666666556666666663
No 74
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=44.64 E-value=39 Score=32.77 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=42.5
Q ss_pred HHHHhhCCCceEEEEcccccHHH---H------HHHH---HhhhhcCCEEeecCccCCHHHHHHHHHHCCC
Q 005967 24 NEVKRQIPSVTAVSSGAIASDYQ---R------LRVE---SVCSRLGLVSLAYLWKQDQSLLLQEMITNGI 82 (667)
Q Consensus 24 ~~~k~~~p~v~~v~~GaI~s~yq---r------~rve---~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~ 82 (667)
.++.+++ |++.|++|....++. . ..++ +...+.++..+.|||..+..++++...+.|+
T Consensus 109 ~~~A~~~-g~~~I~~G~~~~D~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~PL~~~~K~ei~~~a~~~gl 178 (232)
T 2pg3_A 109 SIYAYQV-GAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQ 178 (232)
T ss_dssp HHHHHHH-TCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHc-CcCEEEEccCccccCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 4555555 899999999775421 1 1222 3333458999999999999999999999998
No 75
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=43.86 E-value=70 Score=30.23 Aligned_cols=85 Identities=8% Similarity=-0.011 Sum_probs=54.5
Q ss_pred HHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCcc-CCHHHHHHHHHHCCCeEEEEEEeCCCCCCccccC
Q 005967 23 LNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWK-QDQSLLLQEMITNGINAITVKVAAMGLEPGKHLG 101 (667)
Q Consensus 23 L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~-~~~~~ll~em~~~g~~a~ii~V~~~gL~~~~~lG 101 (667)
++++++. |+++|++++.....+-.++-+.|.+.|+....-+-. .+..+.++.+.+.|.+.+ +|. .|.+ |
T Consensus 70 ~~~~~~~--Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i--~v~-~g~~-----g 139 (211)
T 3f4w_A 70 SQLLFDA--GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADML--AVH-TGTD-----Q 139 (211)
T ss_dssp HHHHHHT--TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEE--EEE-CCHH-----H
T ss_pred HHHHHhc--CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEE--EEc-CCCc-----c
Confidence 4555555 999999998876555566677789999987643222 245678899999999974 443 3322 2
Q ss_pred ccccc-chHHHHHhhhh
Q 005967 102 KEIAF-LDPYLHKLKES 117 (667)
Q Consensus 102 ~~l~~-~~~~l~~l~~~ 117 (667)
..... ..+.+.++.+.
T Consensus 140 ~~~~~~~~~~i~~l~~~ 156 (211)
T 3f4w_A 140 QAAGRKPIDDLITMLKV 156 (211)
T ss_dssp HHTTCCSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHH
Confidence 22211 24566666654
No 76
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=40.33 E-value=99 Score=30.04 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHC
Q 005967 21 ILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITN 80 (667)
Q Consensus 21 ~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~ 80 (667)
+.++.+++. |+++|++|+...+. ..++.+.|.++|+....=+=-.+..+.++.+.+.
T Consensus 99 ~~~~~~~~~--Gad~v~~~~~~~~~-~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~ 155 (248)
T 1geq_A 99 NFLAEAKAS--GVDGILVVDLPVFH-AKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM 155 (248)
T ss_dssp HHHHHHHHH--TCCEEEETTCCGGG-HHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCEEEECCCChhh-HHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc
Confidence 344555555 89999999887643 4566777888998765422223567777777764
No 77
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=39.74 E-value=78 Score=34.05 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=45.9
Q ss_pred HHHHHhhCCCceEEEE--cccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEE
Q 005967 23 LNEVKRQIPSVTAVSS--GAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITV 87 (667)
Q Consensus 23 L~~~k~~~p~v~~v~~--GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii 87 (667)
++.+.+. |++.|++ +.-.+..+...++.+++.+|+..+.. .....+..+.++++|.+++++
T Consensus 149 ~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g--~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 149 AKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG--NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp HHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE--EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe--ecCCHHHHHHHHHcCCCEEEE
Confidence 3334444 8999986 55567778888999988888765542 346677889999999999998
No 78
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=34.64 E-value=1.2e+02 Score=29.82 Aligned_cols=87 Identities=15% Similarity=0.024 Sum_probs=54.5
Q ss_pred CceEEEEcccc--c-HHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCCCCccccCcccccch
Q 005967 32 SVTAVSSGAIA--S-DYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLD 108 (667)
Q Consensus 32 ~v~~v~~GaI~--s-~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL~~~~~lG~~l~~~~ 108 (667)
|++.|+.++-. + +.-+..+ +.+.++|+..+.= ....+.+..+.+.|++.+.+ ...|+....+. .....
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i-~~~~~~g~~v~~~---v~t~eea~~a~~~Gad~Ig~--~~~g~t~~~~~---~~~~~ 171 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLL-TRIRLHGLLAMAD---CSTVNEGISCHQKGIEFIGT--TLSGYTGPITP---VEPDL 171 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHH-HHHHHTTCEEEEE---CSSHHHHHHHHHTTCSEEEC--TTTTSSSSCCC---SSCCH
T ss_pred CCCEEEECccccCChHHHHHHH-HHHHHCCCEEEEe---cCCHHHHHHHHhCCCCEEEe--cCccCCCCCcC---CCCCH
Confidence 99999887653 2 2223333 3356779888763 35667778899999998865 34555432211 11124
Q ss_pred HHHHHhhhhcCCccccCCce
Q 005967 109 PYLHKLKESYGINVCGEGGE 128 (667)
Q Consensus 109 ~~l~~l~~~~g~~~cGEgGE 128 (667)
+.+.++.+. ++-+..|||=
T Consensus 172 ~li~~l~~~-~ipvIA~GGI 190 (229)
T 3q58_A 172 AMVTQLSHA-GCRVIAEGRY 190 (229)
T ss_dssp HHHHHHHTT-TCCEEEESSC
T ss_pred HHHHHHHHc-CCCEEEECCC
Confidence 667777665 7777888873
No 79
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=34.56 E-value=49 Score=32.19 Aligned_cols=87 Identities=24% Similarity=0.256 Sum_probs=44.1
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCC---EEeecC--------ccC---CHHHHHHHHHHCCCeEEEEE-EeCCCCCC
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGL---VSLAYL--------WKQ---DQSLLLQEMITNGINAITVK-VAAMGLEP 96 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl---~~l~pL--------W~~---~~~~ll~em~~~g~~a~ii~-V~~~gL~~ 96 (667)
|+++|+.|.-+... -.++.++..++|- .++.+. |.. +..++++++.+.|++.+++. +...|-
T Consensus 97 Gad~V~lg~~~l~~-p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~-- 173 (244)
T 1vzw_A 97 GCTRVNLGTAALET-PEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGT-- 173 (244)
T ss_dssp TCSEEEECHHHHHC-HHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------
T ss_pred CCCEEEECchHhhC-HHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccc--
Confidence 67777777644321 2344555554431 123332 444 56788888888888877653 332221
Q ss_pred ccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 97 GKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 97 ~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
.-| ++ .+.+.++.+..++-+..+||
T Consensus 174 --~~g--~~--~~~~~~i~~~~~ipvia~GG 198 (244)
T 1vzw_A 174 --LQG--PN--LELLKNVCAATDRPVVASGG 198 (244)
T ss_dssp ----C--CC--HHHHHHHHHTCSSCEEEESC
T ss_pred --cCC--CC--HHHHHHHHHhcCCCEEEECC
Confidence 112 33 45566666544444444444
No 80
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=33.59 E-value=1.3e+02 Score=29.43 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=54.1
Q ss_pred CceEEEEcccc--c-HHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCCCCccccCcccccch
Q 005967 32 SVTAVSSGAIA--S-DYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLD 108 (667)
Q Consensus 32 ~v~~v~~GaI~--s-~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL~~~~~lG~~l~~~~ 108 (667)
|++.|+.++-. + +.-+..++ .+.++|+..+.- ....+.+..+.+.|.+.+.+ ...|+...... .....
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~-~~~~~g~~v~~~---v~t~eea~~a~~~Gad~Ig~--~~~g~t~~~~~---~~~~~ 171 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLA-RIHHHHLLTMAD---CSSVDDGLACQRLGADIIGT--TMSGYTTPDTP---EEPDL 171 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHH-HHHHTTCEEEEE---CCSHHHHHHHHHTTCSEEEC--TTTTSSSSSCC---SSCCH
T ss_pred CCCEEEECccccCCHHHHHHHHH-HHHHCCCEEEEe---CCCHHHHHHHHhCCCCEEEE--cCccCCCCCCC---CCCCH
Confidence 99999887754 2 22333433 356779887763 45667788899999998865 34455432111 11125
Q ss_pred HHHHHhhhhcCCccccCCc
Q 005967 109 PYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 109 ~~l~~l~~~~g~~~cGEgG 127 (667)
+.+.++.+. ++-+..|||
T Consensus 172 ~~i~~l~~~-~ipvIA~GG 189 (232)
T 3igs_A 172 PLVKALHDA-GCRVIAEGR 189 (232)
T ss_dssp HHHHHHHHT-TCCEEEESC
T ss_pred HHHHHHHhc-CCcEEEECC
Confidence 667777665 777777877
No 81
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=33.19 E-value=59 Score=33.41 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHH--HHH------HhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEE-
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRL--RVE------SVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKV- 89 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~--rve------~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V- 89 (667)
++..|.++.+++ |++.++.|..+.+...+ .++ .+....++..+.|||..+..|+.+-..+.|+...++.-
T Consensus 108 ~~~~l~~~A~~~-g~~~la~Gh~~dD~~Et~~~iks~~~~~~l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~ 186 (308)
T 2dpl_A 108 FIEVFEEVAKKI-GAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRM 186 (308)
T ss_dssp HHHHHHHHHHHH-TCSEEECCCCCC---------------------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCC
T ss_pred HHHHHHHHHHHc-CcCEEEECCCCccchhhccchhhhhccccCCccCCCeEEEEcccCCHHHHHHHHHHhCCCceeeecC
Confidence 455676666666 89999999876543222 122 22344578999999999999999999999998765421
Q ss_pred --eCCCCCCccccCc
Q 005967 90 --AAMGLEPGKHLGK 102 (667)
Q Consensus 90 --~~~gL~~~~~lG~ 102 (667)
...||.- +++|.
T Consensus 187 P~~~~~La~-R~~g~ 200 (308)
T 2dpl_A 187 PFPGPGLAV-RVIGE 200 (308)
T ss_dssp CCCTTGGGG-GBSSS
T ss_pred CCCcccccc-cccCc
Confidence 2345543 56774
No 82
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=31.55 E-value=1.2e+02 Score=30.87 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHhhCCCceEEEEcc-cccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCCC
Q 005967 24 NEVKRQIPSVTAVSSGA-IASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLE 95 (667)
Q Consensus 24 ~~~k~~~p~v~~v~~Ga-I~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL~ 95 (667)
.+++.. |+++|..++ ++..-+-...-+.|.++|+.++.=. .+.+| ++..++.|.+ +|.|+...|.
T Consensus 136 ~ea~~~--GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvev--h~~eE-l~~A~~~ga~--iIGinnr~l~ 201 (272)
T 3tsm_A 136 YEARSW--GADCILIIMASVDDDLAKELEDTAFALGMDALIEV--HDEAE-MERALKLSSR--LLGVNNRNLR 201 (272)
T ss_dssp HHHHHT--TCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEE--CSHHH-HHHHTTSCCS--EEEEECBCTT
T ss_pred HHHHHc--CCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEe--CCHHH-HHHHHhcCCC--EEEECCCCCc
Confidence 344443 999999886 5555666777788999999877655 34455 4666677776 5577766654
No 83
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=31.53 E-value=94 Score=31.32 Aligned_cols=89 Identities=10% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCCCCcccc
Q 005967 21 ILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHL 100 (667)
Q Consensus 21 ~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL~~~~~l 100 (667)
+.++++++. ||+|++.-|+--+. ...+...|.+.||....-.=-..+.+-++++.+.+-.++-+ |+..|-.-.+
T Consensus 107 ~F~~~~~~a--GvdG~IipDLP~eE-~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~-Vs~~GvTG~~-- 180 (252)
T 3tha_A 107 KFVKKAKSL--GICALIVPELSFEE-SDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYL-LASIGITGTK-- 180 (252)
T ss_dssp HHHHHHHHT--TEEEEECTTCCGGG-CHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEE-ECCSCSSSCS--
T ss_pred HHHHHHHHc--CCCEEEeCCCCHHH-HHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEE-EecCCCCCcc--
Confidence 355666665 99999999987655 44556789999999755553445578888888765444433 6655543221
Q ss_pred Cccccc-chHHHHHhhh
Q 005967 101 GKEIAF-LDPYLHKLKE 116 (667)
Q Consensus 101 G~~l~~-~~~~l~~l~~ 116 (667)
..+.. +.+++.++++
T Consensus 181 -~~~~~~~~~~v~~vr~ 196 (252)
T 3tha_A 181 -SVEEAILQDKVKEIRS 196 (252)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred -cCCCHHHHHHHHHHHH
Confidence 12222 3456666664
No 84
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=31.04 E-value=1e+02 Score=29.97 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHCCCeEEEEEE-eCCCCCCccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 69 DQSLLLQEMITNGINAITVKV-AAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 69 ~~~~ll~em~~~g~~a~ii~V-~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
+..+.++++.+.|...+++.- ...|- .-| .+ .+.+.++.+..++-+..+||
T Consensus 153 ~~~e~~~~~~~~G~~~i~~~~~~~~g~----~~g--~~--~~~i~~l~~~~~ipvia~GG 204 (252)
T 1ka9_F 153 HAVEWAVKGVELGAGEILLTSMDRDGT----KEG--YD--LRLTRMVAEAVGVPVIASGG 204 (252)
T ss_dssp EHHHHHHHHHHHTCCEEEEEETTTTTT----CSC--CC--HHHHHHHHHHCSSCEEEESC
T ss_pred cHHHHHHHHHHcCCCEEEEecccCCCC----cCC--CC--HHHHHHHHHHcCCCEEEeCC
Confidence 456777777777887766642 22221 122 22 44555665544444444444
No 85
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=30.36 E-value=97 Score=29.92 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=48.7
Q ss_pred CceEEEEcccccHHHHHHHHHhhhhcCC---EEeec------------CccC---CHHHHHHHHHHCCCeEEEEE-EeCC
Q 005967 32 SVTAVSSGAIASDYQRLRVESVCSRLGL---VSLAY------------LWKQ---DQSLLLQEMITNGINAITVK-VAAM 92 (667)
Q Consensus 32 ~v~~v~~GaI~s~yqr~rve~vc~~lgl---~~l~p------------LW~~---~~~~ll~em~~~g~~a~ii~-V~~~ 92 (667)
|+++|+.|.-+... -.+++++...+|- .++.+ =|.. +..++++.+.+.|++.+++. +...
T Consensus 96 Gad~V~lg~~~l~~-p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~ 174 (244)
T 2y88_A 96 GCARVNVGTAALEN-PQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKD 174 (244)
T ss_dssp TCSEEEECHHHHHC-HHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTT
T ss_pred CCCEEEECchHhhC-hHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEecCCc
Confidence 78888888754321 2345555555441 12232 2443 56788899999999988753 3332
Q ss_pred CCCCccccCcccccchHHHHHhhhhcCCccccCCc
Q 005967 93 GLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 93 gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
|. +..++ .+.+.++.+..++-+..+||
T Consensus 175 ~~------~~g~~--~~~~~~l~~~~~ipvia~GG 201 (244)
T 2y88_A 175 GT------LGGPN--LDLLAGVADRTDAPVIASGG 201 (244)
T ss_dssp TT------TSCCC--HHHHHHHHTTCSSCEEEESC
T ss_pred cc------cCCCC--HHHHHHHHHhCCCCEEEECC
Confidence 21 11233 45666666544555555555
No 86
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=29.56 E-value=1.9e+02 Score=29.21 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=36.1
Q ss_pred CceEEEEcc-cccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEE
Q 005967 32 SVTAVSSGA-IASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 32 ~v~~v~~Ga-I~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~ 88 (667)
|+++|..|+ .++..+-..+-..|.++|+.++.=. .+.++ +....+.|.+.+.+.
T Consensus 135 GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev--~t~ee-~~~A~~~Gad~IGv~ 189 (272)
T 3qja_A 135 GADMLLLIVAALEQSVLVSMLDRTESLGMTALVEV--HTEQE-ADRALKAGAKVIGVN 189 (272)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEE--SSHHH-HHHHHHHTCSEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEc--CCHHH-HHHHHHCCCCEEEEC
Confidence 899999874 4555565666778899999875322 34455 455567787766554
No 87
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.04 E-value=1.2e+02 Score=29.02 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccC--CHHHHHHHHHHCCCeEEEEE
Q 005967 16 VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQ--DQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 16 ~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~--~~~~ll~em~~~g~~a~ii~ 88 (667)
.-|+.++|+++++....|--|.++.+.... +.+|.-||+..-.+-+.. +-++.++++.+.|++++|-.
T Consensus 80 ~~Dil~al~~a~~~~~kIavvg~~~~~~~~-----~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~ 149 (196)
T 2q5c_A 80 RFDTMRAVYNAKRFGNELALIAYKHSIVDK-----HEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSG 149 (196)
T ss_dssp HHHHHHHHHHHGGGCSEEEEEEESSCSSCH-----HHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEEC
T ss_pred HhHHHHHHHHHHhhCCcEEEEeCcchhhHH-----HHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECC
Confidence 358899999998876567778888887754 478888998877766663 45789999999999998864
No 88
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=27.90 E-value=60 Score=31.03 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=40.5
Q ss_pred CceEEEEccccc----HHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCe
Q 005967 32 SVTAVSSGAIAS----DYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 83 (667)
Q Consensus 32 ~v~~v~~GaI~s----~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~ 83 (667)
|+++|++|.-+. ++.|..+..+..+.|+..+.||++.+..++.+ ++...+.
T Consensus 101 g~~~i~tGh~~dD~~et~~~~gl~~~~~~~~~~iirPLl~~~k~eI~~-~a~~~l~ 155 (203)
T 3k32_A 101 EYSILADGTRRDDRVPKLSYSEIQSLEMRKNIQYITPLMGFGYKTLRH-LASEFFI 155 (203)
T ss_dssp TCSEEECCCCTTCCSSCCCHHHHHHHHHHHTCEEECGGGGCCHHHHHH-HHHHHEE
T ss_pred CCCEEEECCCcccchhhcchhhccCcccccCCeEEeccCCCCHHHHHH-HHHHhCC
Confidence 799999998663 36677788888888999999999999998766 5554333
No 89
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=26.86 E-value=1.5e+02 Score=29.71 Aligned_cols=93 Identities=10% Similarity=0.079 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCC------EEeecCccCCHHHHHHHHHHCCCeEEEE
Q 005967 14 DEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGL------VSLAYLWKQDQSLLLQEMITNGINAITV 87 (667)
Q Consensus 14 dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl------~~l~pLW~~~~~~ll~em~~~g~~a~ii 87 (667)
..+++..+.|.+++++ .-|.++=+ |+|....++.++...++ ..+.|++++ .+++.-.-+.|+..+.-
T Consensus 115 ~~~~e~~~al~~l~~~-Gkir~iGv----Sn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~ 187 (278)
T 1hw6_A 115 DNYVHAWEKMIELRAA-GLTRSIGV----SNHLVPHLERIVAATGVVPAVNQIELHPAYQQ--REITDWAAAHDVKIESW 187 (278)
T ss_dssp SSHHHHHHHHHHHHHT-TSEEEEEE----ESCCHHHHHHHHHHHSCCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHc-CCccEEEe----cCCCHHHHHHHHHhcCCCceeEEEEeCcccCC--HHHHHHHHHcCCEEEEe
Confidence 3577888899999987 24555443 44544556666655555 345677654 67888888899866544
Q ss_pred EEeCCCCCCccccCcccccchHHHHHhhhhcCCc
Q 005967 88 KVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGIN 121 (667)
Q Consensus 88 ~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~ 121 (667)
+.-+.|+ |+.+. .+.|.++.++||+.
T Consensus 188 spl~~G~------~~~~~--~~~l~~ia~~~g~s 213 (278)
T 1hw6_A 188 GPLGQGK------YDLFG--AEPVTAAAAAHGKT 213 (278)
T ss_dssp STTGGGS------SCCTT--SHHHHHHHHHHTCC
T ss_pred ccccCCC------ccccc--cHHHHHHHHHhCCC
Confidence 4333332 23343 36777888788753
No 90
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=26.65 E-value=1.1e+02 Score=26.19 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=55.7
Q ss_pred cceeEecCCcc--hHHHHHHHHHHHHhhCCC--ceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHH
Q 005967 4 QKLSYRMTPGD--EVEDMYILLNEVKRQIPS--VTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMIT 79 (667)
Q Consensus 4 q~~~y~~~~~d--E~e~l~~~L~~~k~~~p~--v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~ 79 (667)
...-|..+++| .........+.+.+.+|+ |+-|+.|+-..-+.+ +.+-.+.+++|.+
T Consensus 4 ~kvv~~v~~~d~~~~~~~L~~a~n~~~~~~~~~i~vv~~G~av~~~~~-------------------~~~~~~~i~~L~~ 64 (113)
T 1l1s_A 4 YRVVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRR-------------------DSEYSGDVSELTG 64 (113)
T ss_dssp EEEEEEECCCCHHHHHHHHHHHHHHHHHCSSEEEEEEECGGGGGGGBT-------------------TCTTHHHHHHHHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEechHHHHHHc-------------------CChHHHHHHHHHH
Confidence 44556655554 333333334444555555 788888986654431 1356789999999
Q ss_pred CCCeEEEEEE--eCCCCCCcccc-Cccccc-chHHHHHhhh
Q 005967 80 NGINAITVKV--AAMGLEPGKHL-GKEIAF-LDPYLHKLKE 116 (667)
Q Consensus 80 ~g~~a~ii~V--~~~gL~~~~~l-G~~l~~-~~~~l~~l~~ 116 (667)
.|.++.++.. .+.|+++++++ |-++.. -...|.+|.+
T Consensus 65 ~gV~~~~C~~~l~~~~i~~~~L~~~v~ivp~gv~~l~~lq~ 105 (113)
T 1l1s_A 65 QGVRFCACSNTLRASGMDGDDLLEGVDVVSSGVGHIVRRQT 105 (113)
T ss_dssp TTCEEEEEHHHHHHTTCCGGGBCTTCEEESCHHHHHHHHHH
T ss_pred CCCEEEecHHHHHHcCCCHHHcCCCCEEechHHHHHHHHHH
Confidence 9999999954 57888874332 222221 1345555554
No 91
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=26.51 E-value=1.8e+02 Score=29.44 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=29.7
Q ss_pred HHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeE
Q 005967 23 LNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINA 84 (667)
Q Consensus 23 L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a 84 (667)
++++++. |+++++..|+--+. ...+...|.+.||....-.=-....+-+.++.+.+-.+
T Consensus 118 ~~~~~~a--GvdGvIipDlp~ee-~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gf 176 (271)
T 3nav_A 118 YQRCQKA--GVDSVLIADVPTNE-SQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGY 176 (271)
T ss_dssp HHHHHHH--TCCEEEETTSCGGG-CHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSC
T ss_pred HHHHHHC--CCCEEEECCCCHHH-HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCe
Confidence 3444444 66776666665443 23334556666766433332223445555555544433
No 92
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=26.08 E-value=2.1e+02 Score=31.28 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=57.6
Q ss_pred HHHHHHhhCCCceEEEE--cccccHHHHHHHHHhhhhc-CCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCCCCCCc-
Q 005967 22 LLNEVKRQIPSVTAVSS--GAIASDYQRLRVESVCSRL-GLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPG- 97 (667)
Q Consensus 22 ~L~~~k~~~p~v~~v~~--GaI~s~yqr~rve~vc~~l-gl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~gL~~~- 97 (667)
.++.+.+. |+++|.. +.-...+....++.+.+.+ ++..+.- .....+..+.+.++|.+++++..-..|....
T Consensus 259 ~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~--~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~ 334 (514)
T 1jcn_A 259 RLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGG--NVVTAAQAKNLIDAGVDGLRVGMGCGSICITQ 334 (514)
T ss_dssp HHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEE--EECSHHHHHHHHHHTCSEEEECSSCSCCBTTB
T ss_pred HHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEec--ccchHHHHHHHHHcCCCEEEECCCCCcccccc
Confidence 33444444 8999997 3223456667788888887 5443321 2466777899999999999983222221000
Q ss_pred cc--cCcccccchHHHHHhhhhcCCccccCCc
Q 005967 98 KH--LGKEIAFLDPYLHKLKESYGINVCGEGG 127 (667)
Q Consensus 98 ~~--lG~~l~~~~~~l~~l~~~~g~~~cGEgG 127 (667)
.. .|.........+.++.+.+++.+.+-||
T Consensus 335 ~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GG 366 (514)
T 1jcn_A 335 EVMACGRPQGTAVYKVAEYARRFGVPIIADGG 366 (514)
T ss_dssp CCCSCCCCHHHHHHHHHHHHGGGTCCEEEESC
T ss_pred cccCCCccchhHHHHHHHHHhhCCCCEEEECC
Confidence 01 3432222245556666555655555444
No 93
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=23.67 E-value=1.2e+02 Score=23.51 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccccHHHHH-HHHHhhhhcCC
Q 005967 15 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRL-RVESVCSRLGL 59 (667)
Q Consensus 15 E~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~-rve~vc~~lgl 59 (667)
..++|...|+++....|+...++.||=...||+- .|=..|.+.|+
T Consensus 28 ~~~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~ 73 (74)
T 2jwk_A 28 TEEMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLLHLAGI 73 (74)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 4577888888888888888999999999999865 66677777776
No 94
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=23.52 E-value=96 Score=32.22 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCE------EeecCccCCHHHHHHHHHHCCCeEEE
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV------SLAYLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~------~l~pLW~~~~~~ll~em~~~g~~a~i 86 (667)
...+++..++|.+++++ .-|.++=+-- ++..|-.+...+|...|.. .+.|+++..+.+++..+.+.|+..+.
T Consensus 164 ~~~~~e~~~aL~~l~~~-Gkir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q~~~~~~~~~~e~~ll~~~~~~gI~v~a 241 (353)
T 3erp_A 164 ETPLKETMKALDHLVRH-GKALYVGISN-YPADLARQAIDILEDLGTPCLIHQPKYSLFERWVEDGLLALLQEKGVGSIA 241 (353)
T ss_dssp TSCHHHHHHHHHHHHHT-TSEEEEEEES-CCHHHHHHHHHHHHHHTCCEEEEECBCBTTBCGGGGTHHHHHHHHTCEEEE
T ss_pred CCCHHHHHHHHHHHHHC-CCccEEEecC-CCHHHHHHHHHHHHHcCCCeEEeeccccccccchhhHHHHHHHHcCCeEEE
Confidence 34578888999999988 2466654433 3445656666677666643 35677766677899999999986665
Q ss_pred EEEeCCC
Q 005967 87 VKVAAMG 93 (667)
Q Consensus 87 i~V~~~g 93 (667)
-+.-+.|
T Consensus 242 ~spL~~G 248 (353)
T 3erp_A 242 FSPLAGG 248 (353)
T ss_dssp BSTTGGG
T ss_pred ecccccc
Confidence 5544444
No 95
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=23.05 E-value=24 Score=39.23 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHH---------------HHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCe
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLR---------------VESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 83 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~r---------------ve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~ 83 (667)
++..+.++.+++ |++.++.|..+.+.-.+. +-.+..+.++..+.||+.....|+.+-..+.|+.
T Consensus 318 ~~~~~~~~A~~~-g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp 396 (527)
T 3tqi_A 318 FIRVFEEQAKKL-NVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLP 396 (527)
T ss_dssp HHHHHHHTTTTT-TCCEEECCCCHHHHHCC--------------------------CEECTTTTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHc-CCCEEEccccCCccccccccCCChhheeeeecccccCcccccCccccchhcCCHHHHHHHHHHcCCC
Confidence 455677777777 899999999886543111 1123345567789999999999999988899998
Q ss_pred EEEEEE---eCCCCCCccccCcccc
Q 005967 84 AITVKV---AAMGLEPGKHLGKEIA 105 (667)
Q Consensus 84 a~ii~V---~~~gL~~~~~lG~~l~ 105 (667)
..++.- ...||.- +++| .++
T Consensus 397 ~~~v~~~P~p~~~l~~-R~~g-~vt 419 (527)
T 3tqi_A 397 ADLIYRHPFPGPGLAI-RILG-EVS 419 (527)
T ss_dssp HHHHTCCCCCTTGGGS-SBCS-CCC
T ss_pred hhhhccCCCCCCCcce-ecCC-ccC
Confidence 755432 3356764 6888 666
No 96
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=21.89 E-value=68 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=28.3
Q ss_pred CCcchHHHHHHHHHHHHhhCCCceEEEEccccc
Q 005967 11 TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS 43 (667)
Q Consensus 11 ~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s 43 (667)
.+.++++.+.+.|+.++.+.|+|..+.+|--.+
T Consensus 21 ~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 53 (108)
T 1tr0_A 21 ITREQIDNYINDYTNLLDLIPSMKSFNWGTDLG 53 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence 345678899999999999999999999997665
No 97
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=21.85 E-value=2.4e+02 Score=30.85 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=40.5
Q ss_pred CceEEEEc--ccccHHHHHHHHHhhhhc-CCEEeecCccCCHHHHHHHHHHCCCeEEEEE
Q 005967 32 SVTAVSSG--AIASDYQRLRVESVCSRL-GLVSLAYLWKQDQSLLLQEMITNGINAITVK 88 (667)
Q Consensus 32 ~v~~v~~G--aI~s~yqr~rve~vc~~l-gl~~l~pLW~~~~~~ll~em~~~g~~a~ii~ 88 (667)
|++.|+.+ .-.+......++.+.+.. ++..+. -.....+..+.++++|.+++++.
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~--g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG--GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE--EEECSHHHHHHHHHTTCSEEEEC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEE--eeeCcHHHHHHHHHcCCCEEEEC
Confidence 88888864 334677888899999887 544433 12456677899999999999973
No 98
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=21.50 E-value=2.7e+02 Score=28.06 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCC
Q 005967 22 LLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNG 81 (667)
Q Consensus 22 ~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g 81 (667)
.++++++. |+++++..|+--+. ..+..+.|.+.||....-+=-..+.+-+..+.+.+
T Consensus 115 f~~~~~~a--Gvdgvii~Dlp~ee-~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~ 171 (267)
T 3vnd_A 115 FYTKAQAA--GVDSVLIADVPVEE-SAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG 171 (267)
T ss_dssp HHHHHHHH--TCCEEEETTSCGGG-CHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC
T ss_pred HHHHHHHc--CCCEEEeCCCCHhh-HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 34444444 77777777766543 23344566777776543332233445566665543
No 99
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=21.29 E-value=1.3e+02 Score=30.59 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcC------C-----EEeecCccCCHHHHHHHHHHCCCeEE
Q 005967 19 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG------L-----VSLAYLWKQDQSLLLQEMITNGINAI 85 (667)
Q Consensus 19 l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lg------l-----~~l~pLW~~~~~~ll~em~~~g~~a~ 85 (667)
-+..|.++.+++ |++.|++|.-..+--.+-.-+.+...| + ..+.||+..+..++..-..+.|+..+
T Consensus 113 Ry~~l~~~a~~~-g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~~~~~~~~iirPLl~~~k~eI~~~~~~~gl~~~ 189 (317)
T 1wy5_A 113 RYKFLKEILESE-GFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWV 189 (317)
T ss_dssp HHHHHHHHHHHT-TCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSEETTEECTTTTCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHc-CCCEEEEeCchhHHHHHHHHHHHhCCCcccccCCCCCCCeEECCCccCCHHHHHHHHHHcCCCee
Confidence 344667776776 899999998755433333334444333 2 56788888888888877777777654
No 100
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=21.08 E-value=76 Score=26.84 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEccccc
Q 005967 12 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS 43 (667)
Q Consensus 12 ~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s 43 (667)
+.++++.+.+.|+.++.+.|+|..+.+|--.+
T Consensus 18 ~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 49 (103)
T 2qyc_A 18 DAGFFRTVDEYVARMKRECDGLLLYHFGENVA 49 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC
Confidence 45678899999999999999999999998766
No 101
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.74 E-value=1.4e+02 Score=29.38 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccC--CHHHHHHHHHHCCCeEEEEEE----
Q 005967 16 VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQ--DQSLLLQEMITNGINAITVKV---- 89 (667)
Q Consensus 16 ~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~--~~~~ll~em~~~g~~a~ii~V---- 89 (667)
.-|+.++|+++++....|--|.++.+.... +.+|.-||+..-.+-+.. +-++.++++.+.|++++|-..
T Consensus 92 ~~Dil~aL~~a~~~~~kIavVg~~~~~~~~-----~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~~~ 166 (225)
T 2pju_A 92 GYDVLQFLAKAGKLTSSIGVVTYQETIPAL-----VAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITD 166 (225)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEESSCCHHH-----HHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHH
T ss_pred HHHHHHHHHHHHhhCCcEEEEeCchhhhHH-----HHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHHHH
Confidence 358889999998876667788888887653 578888888777666664 446889999999999988642
Q ss_pred --eCCCCC
Q 005967 90 --AAMGLE 95 (667)
Q Consensus 90 --~~~gL~ 95 (667)
...||+
T Consensus 167 ~A~~~Gl~ 174 (225)
T 2pju_A 167 LAEEAGMT 174 (225)
T ss_dssp HHHHTTSE
T ss_pred HHHHcCCc
Confidence 237776
No 102
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=20.71 E-value=2.2e+02 Score=28.94 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCE--------EeecCccCCHHHHHHHHHHCCCeEEE
Q 005967 15 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV--------SLAYLWKQDQSLLLQEMITNGINAIT 86 (667)
Q Consensus 15 E~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~--------~l~pLW~~~~~~ll~em~~~g~~a~i 86 (667)
.+++..++|.+++++ .-|.++=+ |+|....++.++...++. .+.|+++ +.+++.-..+.|+..+.
T Consensus 144 ~~~e~~~al~~l~~~-Gkir~iGv----Sn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a 216 (324)
T 3ln3_A 144 DFCDTWERLEECXDA-GLVXSIGV----SNFNHRQLERILNXPGLXYXPVCNQVECHLYLN--QRXLLDYCESXDIVLVA 216 (324)
T ss_dssp CHHHHHHHHHHHHHT-TSEEEEEE----ESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBC--CHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHhc-CCeeEEEe----cCCcHHHHHHHHHhcCccCCceeeEeeeCcccc--hHHHHHHHHHcCCEEEE
Confidence 367888899999887 23555433 445455566666655543 2456665 57899988999988766
Q ss_pred EEEeCCCCCCccccCccccc--chHHHHHhhhhcCCcc
Q 005967 87 VKVAAMGLEPGKHLGKEIAF--LDPYLHKLKESYGINV 122 (667)
Q Consensus 87 i~V~~~gL~~~~~lG~~l~~--~~~~l~~l~~~~g~~~ 122 (667)
-+.-+.|+.. .|....... ..+.|.++.++||+.+
T Consensus 217 ~spL~~g~~~-~~~~~~~~~~~~~~~l~~ia~~~g~t~ 253 (324)
T 3ln3_A 217 YGALGTQRYX-EWVDQNSPVLLNDPVLCDVAXXNXRSP 253 (324)
T ss_dssp ESTTSCCCCT-TTSCTTSCCGGGCHHHHHHHHHHTSCH
T ss_pred ecCCCCCCcc-cccccCCcchhcCHHHHHHHHhhCCCH
Confidence 6666666543 354433221 1367888888888754
No 103
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=20.12 E-value=2.9e+02 Score=28.97 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.0
Q ss_pred CceEEEE--cccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEE
Q 005967 32 SVTAVSS--GAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITV 87 (667)
Q Consensus 32 ~v~~v~~--GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii 87 (667)
|++.|+. +.-.+......++.+++.+++..+.- .....+..+.++++|.+++++
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg--~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG--NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE--EECSHHHHHHHHHTTCSEEEE
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc--cCCCHHHHHHHHHcCcCEEEE
Confidence 7887774 33346667778888888887765531 235667789999999999987
Done!