Query 005968
Match_columns 667
No_of_seqs 256 out of 958
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 16:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928 Alpha-1,4-N-acetylgluc 100.0 3.7E-66 8E-71 544.5 22.1 395 185-666 3-404 (409)
2 PF04572 Gb3_synth: Alpha 1,4- 99.9 2.4E-27 5.2E-32 221.9 7.9 124 535-666 1-130 (135)
3 PF05704 Caps_synth: Capsular 99.8 9E-19 1.9E-23 181.8 12.9 137 391-554 44-189 (276)
4 PF04488 Gly_transf_sug: Glyco 99.7 8E-18 1.7E-22 149.7 7.6 95 407-516 1-97 (103)
5 COG3774 OCH1 Mannosyltransfera 99.7 1.9E-17 4.1E-22 176.2 8.0 157 388-576 79-244 (347)
6 PF12919 TcdA_TcdB: TcdA/TcdB 98.5 3.3E-07 7.2E-12 103.1 8.9 39 393-433 2-40 (514)
7 cd02537 GT8_Glycogenin Glycoge 93.6 0.26 5.5E-06 50.5 8.1 56 499-554 93-152 (240)
8 cd04194 GT8_A4GalT_like A4GalT 90.0 1.3 2.8E-05 44.9 8.3 98 406-517 11-117 (248)
9 PRK15383 type III secretion sy 88.1 1.8 3.9E-05 45.8 7.7 98 456-558 165-286 (335)
10 PRK15382 non-LEE encoded effec 88.0 1 2.3E-05 47.4 6.0 73 486-558 182-278 (326)
11 PLN02829 Probable galacturonos 86.4 9.9 0.00021 44.9 13.2 114 389-517 355-478 (639)
12 PRK15384 type III secretion sy 86.0 1.5 3.3E-05 46.3 5.9 73 486-558 187-283 (336)
13 cd00505 Glyco_transf_8 Members 85.7 3.3 7.2E-05 42.2 8.2 123 405-542 11-165 (246)
14 cd06914 GT8_GNT1 GNT1 is a fun 83.5 4.8 0.0001 43.1 8.4 149 499-661 95-255 (278)
15 PRK15171 lipopolysaccharide 1, 81.9 6.2 0.00013 42.9 8.7 109 393-517 24-142 (334)
16 cd06429 GT8_like_1 GT8_like_1 78.5 10 0.00022 40.0 8.7 63 485-551 99-175 (257)
17 cd06431 GT8_LARGE_C LARGE cata 78.4 5.7 0.00012 42.2 6.9 99 404-517 10-119 (280)
18 PF01501 Glyco_transf_8: Glyco 73.9 3.3 7.2E-05 40.7 3.5 64 486-549 85-177 (250)
19 PLN00176 galactinol synthase 68.9 6.8 0.00015 43.0 4.8 64 489-552 105-206 (333)
20 PF03407 Nucleotid_trans: Nucl 50.8 55 0.0012 32.4 7.3 106 485-598 55-174 (212)
21 PF10587 EF-1_beta_acid: Eukar 43.9 15 0.00032 26.9 1.4 15 143-157 1-15 (28)
22 PLN02718 Probable galacturonos 43.7 44 0.00095 39.6 6.0 119 391-517 310-439 (603)
23 COG1442 RfaJ Lipopolysaccharid 43.4 55 0.0012 36.0 6.4 93 410-517 17-119 (325)
24 PLN02742 Probable galacturonos 41.8 68 0.0015 37.6 7.1 116 388-517 250-374 (534)
25 PLN02910 polygalacturonate 4-a 38.5 76 0.0016 38.0 6.8 34 484-517 459-496 (657)
26 cd06430 GT8_like_2 GT8_like_2 34.4 19 0.0004 39.3 1.1 30 488-517 85-118 (304)
27 PF01484 Col_cuticle_N: Nemato 27.4 61 0.0013 25.4 2.7 30 13-42 4-33 (53)
28 cd06432 GT8_HUGT1_C_like The C 25.7 34 0.00073 35.7 1.2 107 394-517 2-117 (248)
29 PF15240 Pro-rich: Proline-ric 22.3 47 0.001 33.8 1.5 11 24-34 2-12 (179)
No 1
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-66 Score=544.50 Aligned_cols=395 Identities=33% Similarity=0.503 Sum_probs=325.9
Q ss_pred hhhcccchhhhhccccccccccccCCCCCCCCCCCCCCCcccccchhHHHHHHHHhhhcccccccCCCCccccCCCCccc
Q 005968 185 GEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNF 264 (667)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (667)
++|+||+++++|++||+||+.+ |++.++|||||||+++ |.|+++++++ +..+.||+.++++++....
T Consensus 3 ~~~~~~~~~~~~~~rl~~s~~~-l~~~~~~~~~~~~~~~-~~l~~~~~v~------~~~~~~~~~~~i~~~~~~~----- 69 (409)
T KOG1928|consen 3 HDITDKVLLVLDLRRLNRSGSS-LFTAFAPMLLDLDSVT-TLLVSNLSVV------RDFSPPFVLIEILSVVPSL----- 69 (409)
T ss_pred CchhhhhhhhHhHHHHhhcccc-cchhhhhhhhhhceee-EEEEccceee------eccCCcceEEEeccccccc-----
Confidence 7899999999999999999999 9999999999999999 9999999998 6678899999999987642
Q ss_pred CCCCccccchhhhhhhhhhhccccccccccccccccccccccccCCCCcccccchhcccchhhhhhccCCCCCchhhhhh
Q 005968 265 RGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTDEAVR 344 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (667)
+.....+.+-.++-.. .++....+ +.|- .+ +
T Consensus 70 ~~~~e~~~~~~~~~~~----~~~q~~~~-------------~~e~-----~~-------------------------l-- 100 (409)
T KOG1928|consen 70 PVSNEFELLFSVGRSL----SLKQKTTV-------------NGEK-----IE-------------------------L-- 100 (409)
T ss_pred cccchhhhhcchhhhh----hheeeeee-------------cccc-----ch-------------------------h--
Confidence 1222222222222000 00000000 0000 00 0
Q ss_pred hhhhhhcccccccccccCCCcceecCCCCCccccccchhhhhccCcccceEEEEecCCCCCCCHHHHHHHHHHHHHCCCC
Q 005968 345 DSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDA 424 (667)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~s~~Fs~~~~~Ff~~~~c~~rIff~WtSg~~~f~~Rq~caIESwar~nPD~ 424 (667)
.+=..+++-..+.+|+.++..||+.+ |+.+|+|+|+|+++.|+.|++|+|||++++||++
T Consensus 101 -------------------~e~~~~~s~~~~~sf~~~~~~~~~~~-c~~~~fm~w~S~~~~f~~r~~~sIESa~k~hP~~ 160 (409)
T KOG1928|consen 101 -------------------QELENLSSELKSPSFQSRVNSFFRKE-CSVRFFMTWISPAESFGVREMCSIESAFKTHPEG 160 (409)
T ss_pred -------------------hheeeccccccCcccCCCcchhhccC-CceeEEEEecccccCCChhhhhhhHHHHhhCCCc
Confidence 12234455555688999999999877 9999999999999999999999999999999999
Q ss_pred EEEEEeCCCccc---ccchhhhhcccceeeecCChhhhhcCCchhhhhhhHHhhh---hcCCcccchhhHHHHHHHHHhC
Q 005968 425 CVVVFSETIELD---FFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWR---KTKFYNTHYSELVRLAALYKYG 498 (667)
Q Consensus 425 eViLwsdt~~ld---~~s~~fvkegynV~Vv~pDl~elf~gTPLe~~~~iW~kw~---kg~~~~aH~SDllRy~iLYkyG 498 (667)
||.+++++.+.. ....+|+..+|++..+.||+..++++||.+.|...|++|+ ...+..++.||+.|+++|||||
T Consensus 161 cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYG 240 (409)
T KOG1928|consen 161 CVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYG 240 (409)
T ss_pred eEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhC
Confidence 999999874432 2233688899999999999999999999998888888776 2334456799999999999999
Q ss_pred ceEEeCCeeEeccchhhcccccc-cccCCCCcccceEEEEccCChhHHHHHHHHHHhcCCCcccccchHHHHHHHHHHhc
Q 005968 499 GIYMDSDIIVLKSLSSLNNSVGM-EDKFPGSSLNGAVMAFRKHSPFILECLKEFYLTYDETRLRWNGADLLQRVARRFWS 577 (667)
Q Consensus 499 GIYLDtDV~~LRPLd~LlnfvG~-E~~~~~~~InnaVmaa~pgHPfLkelLe~~~~~Yd~~~w~~tGP~llTrvlkk~~~ 577 (667)
||||||||++||++..+.|.+|. +.......++||||++.++|||+.+||++|+.+|++++|+.+||.++||+++++|+
T Consensus 241 GvYLDTDvIvLksl~~l~N~ig~~~~~~~~~~lnnavl~F~k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c~ 320 (409)
T KOG1928|consen 241 GVYLDTDVIVLKSLSNLRNVIGVDPATQAWTRLNNAVLIFDKNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWCN 320 (409)
T ss_pred CEEeeccEEEecccccccccccccchhhHHHhhcCceeecCCCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHhC
Confidence 99999999999999999999993 33234578999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccceEEcCCcCcccCCCcccccccccccchhHHHHHHHHHHhHhCceEEEEeecCCcCCcCCCcccHHHHHHh
Q 005968 578 VDNSYSKKFELNVQPSFFFFPISPQNISRYFVTSATESEKAQQDALFKRILGGSLTFHFWNSMTSALIPEPESLVARLID 657 (667)
Q Consensus 578 ~~~~~~q~~~ItILP~e~FYPi~w~ei~~yF~p~~~~t~k~~~~~ll~~it~nSYaIHLWNs~srsw~p~~gSly~rLar 657 (667)
..+ ..++|.|+..|||++|.++..||..|.++.+..++...+..+.++||++|+||++++++.++.||+|++|+.
T Consensus 321 ~~~-----~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k~Sy~vHlWNk~S~k~~ie~gS~~~~L~s 395 (409)
T KOG1928|consen 321 TKN-----YNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLKNSYAVHLWNKFSRKLKIEEGSAVAKLVS 395 (409)
T ss_pred CCC-----ccceecCccccCceeeeccccccccchhHhhhhhhHHHHHHHhccCeEEEeeeccccccccccchHHHHHHH
Confidence 643 337888888999999888888888887777766667778899999999999999999999999999999999
Q ss_pred ccCCccccC
Q 005968 658 KSCIHCFDV 666 (667)
Q Consensus 658 r~CP~~~~v 666 (667)
+|||+|+.+
T Consensus 396 ~~Cp~~~~~ 404 (409)
T KOG1928|consen 396 KHCPRCYSA 404 (409)
T ss_pred hcCCcccch
Confidence 999999964
No 2
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=99.94 E-value=2.4e-27 Score=221.94 Aligned_cols=124 Identities=37% Similarity=0.644 Sum_probs=111.7
Q ss_pred EEEccCChhHHHHHHHHHHhcCCCcccccchHHHHHHHHHHhccCCCC----CcccceEEcCCcCcccCCCccccccccc
Q 005968 535 MAFRKHSPFILECLKEFYLTYDETRLRWNGADLLQRVARRFWSVDNSY----SKKFELNVQPSFFFFPISPQNISRYFVT 610 (667)
Q Consensus 535 maa~pgHPfLkelLe~~~~~Yd~~~w~~tGP~llTrvlkk~~~~~~~~----~q~~~ItILP~e~FYPi~w~ei~~yF~p 610 (667)
|+++++|||++++|+++..+|+++.|+.+||.++|++++++|...+.. .+|.+++|+|+++||||+|++|+.||.+
T Consensus 1 m~F~~~H~~~~~~l~df~~~Y~~~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~ 80 (135)
T PF04572_consen 1 MAFDKGHPFLWECLEDFVKNYDGNKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEP 80 (135)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcC
Confidence 678999999999999999999999999999999999999999865432 3688999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHhHhCceEEEEeecCCcCCcCCCccc--HHHHHHhccCCccccC
Q 005968 611 SATESEKAQQDALFKRILGGSLTFHFWNSMTSALIPEPES--LVARLIDKSCIHCFDV 666 (667)
Q Consensus 611 ~~~~t~k~~~~~ll~~it~nSYaIHLWNs~srsw~p~~gS--ly~rLarr~CP~~~~v 666 (667)
+..... ...+++||+||+||+++++++++++| +|++|+++|||+|+++
T Consensus 81 ~~~~~~--------~~~~~~Sy~vHlWN~~s~~~~i~~~S~~~y~~La~~~CP~~~~~ 130 (135)
T PF04572_consen 81 PSTEEV--------MEWLKNSYAVHLWNKMSSGLPIEPGSNTLYAKLARQHCPRTYAA 130 (135)
T ss_pred CcchHH--------HHHhhCceEEEecccccCCccccCCcHHHHHHHHHHhChHHHHH
Confidence 776553 24466999999999999999988888 9999999999999875
No 3
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=99.78 E-value=9e-19 Score=181.82 Aligned_cols=137 Identities=23% Similarity=0.337 Sum_probs=107.0
Q ss_pred ccceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccchhhhhcccceeeecCChhhhhcCCchhhhhh
Q 005968 391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFAS 470 (667)
Q Consensus 391 c~~rIff~WtSg~~~f~~Rq~caIESwar~nPD~eViLwsdt~~ld~~s~~fvkegynV~Vv~pDl~elf~gTPLe~~~~ 470 (667)
.++.||+||.+|.+++|+.++.|++||.+++|+|+|+++++. +.. .|+ +-|-.
T Consensus 44 ~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~-Ni~----~Yv------------------~~P~~---- 96 (276)
T PF05704_consen 44 NEKIIWVCWWQGEENAPEIVKKCINSWRKNAPDYEVILLTED-NIK----DYV------------------DIPDF---- 96 (276)
T ss_pred CCCcEEEEECCCccccCHHHHHHHHHHHHHCCCCeEEEEChH-HHH----HHc------------------CCchh----
Confidence 455699999999999999999999999999999999999875 332 232 11222
Q ss_pred hHHhhhhcCCcccchhhHHHHHHHHHhCceEEeCCeeEeccchhhcc---cccccccC---CC---CcccceEEEEccCC
Q 005968 471 VWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNN---SVGMEDKF---PG---SSLNGAVMAFRKHS 541 (667)
Q Consensus 471 iW~kw~kg~~~~aH~SDllRy~iLYkyGGIYLDtDV~~LRPLd~Lln---fvG~E~~~---~~---~~InnaVmaa~pgH 541 (667)
++.++..|....+|+||++|+.+|++|||||+|+++.|.+||+..+. ++.+.... .. ....|.+|++.|||
T Consensus 97 i~~k~~~g~i~~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~~~~~ff~~~~~~~~~~~~~~~~w~~~fi~a~~~n 176 (276)
T PF05704_consen 97 ILEKYEKGKISPAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEIFDSDFFSFSRPDKDYNPISISSWTNFFIAAKKGN 176 (276)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHHhcCCeeEEeccCcCcccchHHHhHhhheeECCCC
Confidence 24567778888999999999999999999999999999999997642 44442111 11 22345599999999
Q ss_pred hhHHHHHHHHHHh
Q 005968 542 PFILECLKEFYLT 554 (667)
Q Consensus 542 PfLkelLe~~~~~ 554 (667)
|+++.+.+.+.+-
T Consensus 177 ~~~~~~~~~~~~y 189 (276)
T PF05704_consen 177 PFIKFWRDLLLEY 189 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 4
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.72 E-value=8e-18 Score=149.74 Aligned_cols=95 Identities=31% Similarity=0.507 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccchhhhhcccceeeecCChhhhhcCCchhhhhhhHHhhhh-cCCcccch
Q 005968 407 SVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRK-TKFYNTHY 485 (667)
Q Consensus 407 ~~Rq~caIESwar~nPD~eViLwsdt~~ld~~s~~fvkegynV~Vv~pDl~elf~gTPLe~~~~iW~kw~k-g~~~~aH~ 485 (667)
|.+++|+|+||+++||+|++++|+++.. ++.+..+++..++.++|.. .....+|.. .....+|+
T Consensus 1 P~~~~~~i~s~~~~nP~~~~~~~~d~~~-------------~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 65 (103)
T PF04488_consen 1 PERFQCSIESWARHNPDYEYILWTDESD-------------NVRVKRIDIEFLFEKTPWF--LELYNKWEPGRYPNYAHK 65 (103)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCc-------------chhhhHHHHHHHHhCChHH--HHHHhhhhcccccchHHH
Confidence 5789999999999999999999998732 3344556777788887721 111111221 22346789
Q ss_pred hhHHHHHHHHHhCceEEeCCeeEeccc-hhhc
Q 005968 486 SELVRLAALYKYGGIYMDSDIIVLKSL-SSLN 516 (667)
Q Consensus 486 SDllRy~iLYkyGGIYLDtDV~~LRPL-d~Ll 516 (667)
||++||++||+|||||+|+|++|+||+ +.++
T Consensus 66 sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 66 SDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL 97 (103)
T ss_pred HHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence 999999999999999999999999999 7765
No 5
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.9e-17 Score=176.25 Aligned_cols=157 Identities=15% Similarity=0.280 Sum_probs=120.2
Q ss_pred cCcccceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccchhhhhcccceeeecCChhhhhcCCchhh
Q 005968 388 KGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHE 467 (667)
Q Consensus 388 ~~~c~~rIff~WtSg~~~f~~Rq~caIESwar~nPD~eViLwsdt~~ld~~s~~fvkegynV~Vv~pDl~elf~gTPLe~ 467 (667)
+...++.|||+|.++. +|+....+..+|..+||||+.++|++. ..+ +++...|.- +-
T Consensus 79 ~~~IPk~IwQTw~~~~--~P~~~~~~~~~~~~~~PdY~yi~~tD~-~~~----~~v~h~~~~------~~---------- 135 (347)
T COG3774 79 HAAIPKIIWQTWSNEK--FPEYVNKLFNRWRSLHPDYRYILWTDE-MRE----PLVEHDYPW------FL---------- 135 (347)
T ss_pred hhhHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCeEEEecchh-hhh----HHHhhccHH------HH----------
Confidence 4566779999999885 899999999999999999999999876 332 344333320 00
Q ss_pred hhhhHHhhhhcCCcccchhhHHHHHHHHHhCceEEeCCeeEeccchhhc-c---cccccccCCCCcccceEEEEccCChh
Q 005968 468 FASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLN-N---SVGMEDKFPGSSLNGAVMAFRKHSPF 543 (667)
Q Consensus 468 ~~~iW~kw~kg~~~~aH~SDllRy~iLYkyGGIYLDtDV~~LRPLd~Ll-n---fvG~E~~~~~~~InnaVmaa~pgHPf 543 (667)
..++..++ .+-++|++||.+||+|||||+|+|..|++++++++ + ++..... ..++|.+|++.|+||+
T Consensus 136 -----~ay~~yp~-~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~~---~~v~n~~m~s~p~hp~ 206 (347)
T COG3774 136 -----DAYRRYPY-GALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTIP---LGVGNGVMGSAPGHPF 206 (347)
T ss_pred -----HHHHccCc-chhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcCC---CcccchhhccCCCCch
Confidence 12222222 23479999999999999999999999999999988 3 3444332 5688999999999999
Q ss_pred HHHHHHHHHHh--cC---CCcccccchHHHHHHHHHHh
Q 005968 544 ILECLKEFYLT--YD---ETRLRWNGADLLQRVARRFW 576 (667)
Q Consensus 544 LkelLe~~~~~--Yd---~~~w~~tGP~llTrvlkk~~ 576 (667)
++.+++.+..+ +. -+++..|||.+++.+++++.
T Consensus 207 ~~~~i~~~~~~~~~~~p~~ti~~stGp~iL~~i~~~~~ 244 (347)
T COG3774 207 LKKMIERLPYNIIWKFPYWTIQASTGPLILSEIHSAYT 244 (347)
T ss_pred HHHHHHHhhhccccCCCceeeecCCCChhHHHHHHHhh
Confidence 99999987721 11 23567899999999999884
No 6
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=98.48 E-value=3.3e-07 Score=103.06 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=30.8
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeCCC
Q 005968 393 MRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETI 433 (667)
Q Consensus 393 ~rIff~WtSg~~~f~~Rq~caIESwar~nPD~eViLwsdt~ 433 (667)
++|||+|.+|. +|..+..+|..|..+||||++.+|.+..
T Consensus 2 K~iH~iWigG~--~~~~~~~Yik~w~~~n~dy~~~lW~D~~ 40 (514)
T PF12919_consen 2 KNIHFIWIGGA--PPDIQRDYIKTWKDTNPDYTINLWYDSN 40 (514)
T ss_dssp SEEEEE--SS-----HHHHHHHHHHHHHTTTSEEEEEE-TT
T ss_pred CeEEEEEeCCC--CchhHHHHHHHHHHHCCCCEEEEEECch
Confidence 57999999984 7999999999999999999999998764
No 7
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=93.61 E-value=0.26 Score=50.48 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=41.9
Q ss_pred ceEEeCCeeEeccchhhccc---cccccc-CCCCcccceEEEEccCChhHHHHHHHHHHh
Q 005968 499 GIYMDSDIIVLKSLSSLNNS---VGMEDK-FPGSSLNGAVMAFRKHSPFILECLKEFYLT 554 (667)
Q Consensus 499 GIYLDtDV~~LRPLd~Llnf---vG~E~~-~~~~~InnaVmaa~pgHPfLkelLe~~~~~ 554 (667)
=+|+|+|+++++++++|.+. ++.... .....+|.|||.+.+......++++.+.+.
T Consensus 93 vlylD~D~~v~~~i~~Lf~~~~~~~a~~d~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~ 152 (240)
T cd02537 93 VVFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFNSGVFVLKPSEETFNDLLDALQDT 152 (240)
T ss_pred EEEEeCCeeEccCHHHHhCCCCceeeecccCccccccceEEEEcCCHHHHHHHHHHHhcc
Confidence 38999999999999998653 222211 112469999999999988888888877553
No 8
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=90.01 E-value=1.3 Score=44.94 Aligned_cols=98 Identities=24% Similarity=0.304 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHCC--CCEEEEEeCCCcccccc--hhhhh-cccceeeecCChhhhhcCCchhhhhhhHHhhhhcCC
Q 005968 406 YSVRHQRGLESVLFHHR--DACVVVFSETIELDFFK--DSFVK-DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (667)
Q Consensus 406 f~~Rq~caIESwar~nP--D~eViLwsdt~~ld~~s--~~fvk-egynV~Vv~pDl~elf~gTPLe~~~~iW~kw~kg~~ 480 (667)
+-.--..++.|+.++++ .+.|.+++++....... ..+.. .+..|.+..++.... ...|.. ...+
T Consensus 11 y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~-~~~~~~----------~~~~ 79 (248)
T cd04194 11 YAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDF-KFFPAT----------TDHI 79 (248)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHH-hcCCcc----------cccc
Confidence 34446678999999999 67777777642211100 01211 144565655553322 211100 0011
Q ss_pred cccchhhHHHHHHHHHhC----ceEEeCCeeEeccchhhcc
Q 005968 481 YNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 481 ~~aH~SDllRy~iLYkyG----GIYLDtDV~~LRPLd~Lln 517 (667)
...=+.|+.+-.... =||||+|++|++++++|.+
T Consensus 80 ---~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~ 117 (248)
T cd04194 80 ---SYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFD 117 (248)
T ss_pred ---cHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhc
Confidence 135678888877665 5899999999999998764
No 9
>PRK15383 type III secretion system protein; Provisional
Probab=88.09 E-value=1.8 Score=45.76 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=61.4
Q ss_pred hhhhhcCCchhhhhhhHHhhhhcCCcccchhhHHHHHHHHHhC-------------------ceEEeCCeeEeccchhhc
Q 005968 456 LDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYG-------------------GIYMDSDIIVLKSLSSLN 516 (667)
Q Consensus 456 l~elf~gTPLe~~~~iW~kw~kg~~~~aH~SDllRy~iLYkyG-------------------GIYLDtDV~~LRPLd~Ll 516 (667)
+.+...+.|...+.+...+ +++ ...=|++|-++|.|-| -||||+|+++..-|..+.
T Consensus 165 L~~i~~~np~dsLI~sy~~-~r~----H~wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly 239 (335)
T PRK15383 165 LEDVLKNNPEETLISSHNK-DKG----HLWFDFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTLY 239 (335)
T ss_pred HHHHhccCcchhHHHHHHH-hcC----ceehHHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccEE
Confidence 5566667776543322111 111 1136999999888754 389999999998887664
Q ss_pred c--ccccc--ccCCCCcccceEEEE-ccCChhHHHHHHHHHHhcCCC
Q 005968 517 N--SVGME--DKFPGSSLNGAVMAF-RKHSPFILECLKEFYLTYDET 558 (667)
Q Consensus 517 n--fvG~E--~~~~~~~InnaVmaa-~pgHPfLkelLe~~~~~Yd~~ 558 (667)
. -++.. .......+.||+++. ..+||.+.+-|+.+....+..
T Consensus 240 ~PDGIavhV~r~~~~~slENg~I~VnRsnHPALl~GL~iMhsK~da~ 286 (335)
T PRK15383 240 LPDGIAIHVSRKDNHVSLENGIIAVNRSEHPALIKGLEIMHSKPYGD 286 (335)
T ss_pred cCCceEEEEEecCCceecccceEEEccCCCHHHHhhhHHhhcCCCCC
Confidence 2 22221 111234577777766 568999999999988765544
No 10
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=87.98 E-value=1 Score=47.44 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhC-------------------ceEEeCCeeEeccchhhcc--cccc--cccCCCCcccceEEEE-ccCC
Q 005968 486 SELVRLAALYKYG-------------------GIYMDSDIIVLKSLSSLNN--SVGM--EDKFPGSSLNGAVMAF-RKHS 541 (667)
Q Consensus 486 SDllRy~iLYkyG-------------------GIYLDtDV~~LRPLd~Lln--fvG~--E~~~~~~~InnaVmaa-~pgH 541 (667)
=|++|-++|.|-| -||||+|+++..-|..+.. -++. +.......+.||+++. ..+|
T Consensus 182 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsnH 261 (326)
T PRK15382 182 FDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPDGIAVHVDCNDDSKSLENGAIVVNRSNH 261 (326)
T ss_pred hHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEecCCccccccceEEEccCCC
Confidence 6999999888754 3899999999988876642 2222 1112234577777766 5689
Q ss_pred hhHHHHHHHHHHhcCCC
Q 005968 542 PFILECLKEFYLTYDET 558 (667)
Q Consensus 542 PfLkelLe~~~~~Yd~~ 558 (667)
|.+.+-|+.+....+..
T Consensus 262 PALl~GL~iMhsK~da~ 278 (326)
T PRK15382 262 PALLAGLDIMKSKVDAH 278 (326)
T ss_pred HHHHhhhHHhhcCCCCC
Confidence 99999999988765544
No 11
>PLN02829 Probable galacturonosyltransferase
Probab=86.38 E-value=9.9 Score=44.91 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=58.7
Q ss_pred CcccceEEEEecCCCCCCCHHHHHHHHHHHHHCC--CCEEEEEeCCCcccccchhhhhcccc-e--eeecCC-hhhhhcC
Q 005968 389 GKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHR--DACVVVFSETIELDFFKDSFVKDGFK-V--AVAMPN-LDELLKD 462 (667)
Q Consensus 389 ~~c~~rIff~WtSg~~~f~~Rq~caIESwar~nP--D~eViLwsdt~~ld~~s~~fvkegyn-V--~Vv~pD-l~elf~g 462 (667)
.+.+.++.|+=.++..++ .|+..|+..|| .+.|.|..=. ++. |+...|. | ++.... .+.+|.+
T Consensus 355 a~~p~k~VFHivTD~~ny-----~aM~~WF~~n~~~~A~v~V~nie-~f~-----wln~~~~pvl~ql~~~~~~~~yf~~ 423 (639)
T PLN02829 355 AKHPSKHVFHIVTDRLNY-----AAMRMWFLVNPPGKATIQVQNIE-EFT-----WLNSSYSPVLKQLGSQSMIDYYFRA 423 (639)
T ss_pred ccCccceEEEEecCccch-----HHHHHHHhhCCCccceEEEEehh-hcc-----cccccccHHHHHhhhhhhhhhhhhc
Confidence 444556666666665443 68889999998 6677665432 221 2222221 1 000011 1222222
Q ss_pred CchhhhhhhHHhhhhcCCcccchhhHHHHHH--HHH-hC-ceEEeCCeeEeccchhhcc
Q 005968 463 TPAHEFASVWFEWRKTKFYNTHYSELVRLAA--LYK-YG-GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 463 TPLe~~~~iW~kw~kg~~~~aH~SDllRy~i--LYk-yG-GIYLDtDV~~LRPLd~Lln 517 (667)
..... ....++++ .......-++|+.+ +.. .. =||||+|++|.++|.+|.+
T Consensus 424 ~~~~~--~~~~k~r~--p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 424 HRANS--DSNLKYRN--PKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred cccCc--ccccccCC--cchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 11000 00011211 11123578899987 333 22 4899999999999999864
No 12
>PRK15384 type III secretion system protein; Provisional
Probab=86.00 E-value=1.5 Score=46.29 Aligned_cols=73 Identities=23% Similarity=0.418 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhCc-------------------eEEeCCeeEeccchhhcc--ccccc--ccCCCCcccceEEEE-ccCC
Q 005968 486 SELVRLAALYKYGG-------------------IYMDSDIIVLKSLSSLNN--SVGME--DKFPGSSLNGAVMAF-RKHS 541 (667)
Q Consensus 486 SDllRy~iLYkyGG-------------------IYLDtDV~~LRPLd~Lln--fvG~E--~~~~~~~InnaVmaa-~pgH 541 (667)
=|++|-++|.|-|+ ||||+|+++..-|..+.. -++.. .......+.||+++. ..+|
T Consensus 187 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsnH 266 (336)
T PRK15384 187 FDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVERIDGRASMENGIIAVDRNNH 266 (336)
T ss_pred hHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCCceEEEEEecCCceecccceEEEccCCC
Confidence 69999998887543 899999999988876642 22221 111234577777766 5689
Q ss_pred hhHHHHHHHHHHhcCCC
Q 005968 542 PFILECLKEFYLTYDET 558 (667)
Q Consensus 542 PfLkelLe~~~~~Yd~~ 558 (667)
|.+.+-|+.+....+..
T Consensus 267 PALl~GL~iMhsK~da~ 283 (336)
T PRK15384 267 PALLAGLEIMHTKFDAD 283 (336)
T ss_pred HHHHhhHHHhhcCCCCC
Confidence 99999999988765544
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=85.72 E-value=3.3 Score=42.24 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHCC-CCEEEEEeCCCcccccchhh--hh--cccceeeecCChhhhhcCCchhhhhhhHHhhhhcC
Q 005968 405 MYSVRHQRGLESVLFHHR-DACVVVFSETIELDFFKDSF--VK--DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTK 479 (667)
Q Consensus 405 ~f~~Rq~caIESwar~nP-D~eViLwsdt~~ld~~s~~f--vk--egynV~Vv~pDl~elf~gTPLe~~~~iW~kw~kg~ 479 (667)
++-.-...++.|+.++++ ...+.++++...-. ....+ +. .++++.+..++...... -+ +....
T Consensus 11 ~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~----------~~~~~ 78 (246)
T cd00505 11 EYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVDILDSVD-SE----------HLKRP 78 (246)
T ss_pred chhHHHHHHHHHHHHhCCCCeEEEEEEccccHH-HHHHHHHHHhccCceEEEEeccccCcch-hh----------hhcCc
Confidence 344446788999999987 56677777542211 11111 11 13345454444221110 00 00000
Q ss_pred CcccchhhHHHHHHHHH---hC-ceEEeCCeeEeccchhhcc------ccccc-cc----------------CCCCcccc
Q 005968 480 FYNTHYSELVRLAALYK---YG-GIYMDSDIIVLKSLSSLNN------SVGME-DK----------------FPGSSLNG 532 (667)
Q Consensus 480 ~~~aH~SDllRy~iLYk---yG-GIYLDtDV~~LRPLd~Lln------fvG~E-~~----------------~~~~~Inn 532 (667)
...+=+.|+.+-.- +. =||||+|+++++++++|.+ .+|.- .. .....+|.
T Consensus 79 ---~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNs 155 (246)
T cd00505 79 ---IKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNS 155 (246)
T ss_pred ---cccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceee
Confidence 11234677766332 33 4899999999999999864 22211 10 01246899
Q ss_pred eEEEEccCCh
Q 005968 533 AVMAFRKHSP 542 (667)
Q Consensus 533 aVmaa~pgHP 542 (667)
|||...+.--
T Consensus 156 GVmlinl~~~ 165 (246)
T cd00505 156 GVFVVNLSKE 165 (246)
T ss_pred eeEEEechHH
Confidence 9999887654
No 14
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=83.48 E-value=4.8 Score=43.07 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=78.1
Q ss_pred ceEEeCCeeEeccchhhccc-----ccccccCCCCcccceEEEEccCChhHHHHHHHHHHhcCCCcccccch--HHHHHH
Q 005968 499 GIYMDSDIIVLKSLSSLNNS-----VGMEDKFPGSSLNGAVMAFRKHSPFILECLKEFYLTYDETRLRWNGA--DLLQRV 571 (667)
Q Consensus 499 GIYLDtDV~~LRPLd~Llnf-----vG~E~~~~~~~InnaVmaa~pgHPfLkelLe~~~~~Yd~~~w~~tGP--~llTrv 571 (667)
=+|||+|++|+++++.|... ++... ....+|.|||...|..-...++++.+......+ ..++ +++..+
T Consensus 95 vlyLDaD~l~~~~ideLf~~~~~~~~Aap~--~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~---~~~~DQdiLN~~ 169 (278)
T cd06914 95 IIYFDSDSIIRHPMDELFFLPNYIKFAAPR--AYWKFASHLMVIKPSKEAFKELMTEILPAYLNK---KNEYDMDLINEE 169 (278)
T ss_pred EEEecCChhhhcChHHHhcCCcccceeeec--CcceecceeEEEeCCHHHHHHHHHHHHHhcccC---CCCCChHHHHHH
Confidence 58999999999999998642 22211 123699999999999988888888765432111 1122 344444
Q ss_pred HHHHhccCCCCCcccceEEcCCcCcccCCC----cccccccccccchhHHHHHHHHHHhHhCceEEEEeecC-CcCCcCC
Q 005968 572 ARRFWSVDNSYSKKFELNVQPSFFFFPISP----QNISRYFVTSATESEKAQQDALFKRILGGSLTFHFWNS-MTSALIP 646 (667)
Q Consensus 572 lkk~~~~~~~~~q~~~ItILP~e~FYPi~w----~ei~~yF~p~~~~t~k~~~~~ll~~it~nSYaIHLWNs-~srsw~p 646 (667)
+...... -...+.++|...+-=.+. .....|..... ...+.|. ......++--||.--. +-+.|..
T Consensus 170 ~~~~~~~-----~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~-~~~~~w~---~~~~~~~~k~vHFSd~Pl~KPW~~ 240 (278)
T cd06914 170 FYNSKQL-----FKPSVLVLPHRQYGLLTGEFREKLHKSFLSNAQ-HLYEKWD---PDDVFKESKVIHFSDSPLPKPWNY 240 (278)
T ss_pred HhCCccc-----cCcceEEcCccccccCChhhcccCHHHhhcccc-ccccccC---HHHHHhhCeEEEecCCCCCCCcCC
Confidence 4322111 112366777643322221 01111211100 0011111 1345678999997543 2355554
Q ss_pred CcccHHHHHHhccCC
Q 005968 647 EPESLVARLIDKSCI 661 (667)
Q Consensus 647 ~~gSly~rLarr~CP 661 (667)
.+...+......+|+
T Consensus 241 ~~~~~~~~~~~~~~~ 255 (278)
T cd06914 241 NNLEDIYCIEKIYCK 255 (278)
T ss_pred cCHHHHHHhCCcccc
Confidence 444455555556664
No 15
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=81.93 E-value=6.2 Score=42.90 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=64.7
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEeCCCcccccc--hhhhhc-ccceeeecCChhhhhcCCchhh
Q 005968 393 MRVFMVWNSPPWMYSVRHQRGLESVLFHHRD--ACVVVFSETIELDFFK--DSFVKD-GFKVAVAMPNLDELLKDTPAHE 467 (667)
Q Consensus 393 ~rIff~WtSg~~~f~~Rq~caIESwar~nPD--~eViLwsdt~~ld~~s--~~fvke-gynV~Vv~pDl~elf~gTPLe~ 467 (667)
..++.+...+. ++-.--..+|.|...+||+ +++.+++++..-+... ..+... +.+|.+..+|... +.+-|...
T Consensus 24 ~~i~Iv~~~D~-ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~-~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYGIDK-NFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCER-LKSLPSTK 101 (334)
T ss_pred CceeEEEECcH-hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHH-HhCCcccC
Confidence 35666666654 5666677889999999987 5677777543321111 011111 3356666666443 33333210
Q ss_pred hhhhHHhhhhcCCcccchhhHHHHHHHHH----hC-ceEEeCCeeEeccchhhcc
Q 005968 468 FASVWFEWRKTKFYNTHYSELVRLAALYK----YG-GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 468 ~~~iW~kw~kg~~~~aH~SDllRy~iLYk----yG-GIYLDtDV~~LRPLd~Lln 517 (667)
....+=++|+.+--- +. =+|||+|++|..+|++|.+
T Consensus 102 --------------~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 102 --------------NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred --------------cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 112466778855332 32 4899999999999999864
No 16
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=78.53 E-value=10 Score=39.98 Aligned_cols=63 Identities=25% Similarity=0.283 Sum_probs=41.1
Q ss_pred hhhHHHHHH---HHHhC-ceEEeCCeeEeccchhhcc------cccccccCCCCcccceEEEEcc----CChhHHHHHHH
Q 005968 485 YSELVRLAA---LYKYG-GIYMDSDIIVLKSLSSLNN------SVGMEDKFPGSSLNGAVMAFRK----HSPFILECLKE 550 (667)
Q Consensus 485 ~SDllRy~i---LYkyG-GIYLDtDV~~LRPLd~Lln------fvG~E~~~~~~~InnaVmaa~p----gHPfLkelLe~ 550 (667)
.+=++|+.+ |-..+ =||||+|++|.+++++|.+ .+|.-. ..+|.|||.... .+-+..++++.
T Consensus 99 ~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~----dyfNsGV~linl~~wr~~~i~~~~~~~ 174 (257)
T cd06429 99 LLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVE----TSWNPGVNVVNLTEWRRQNVTETYEKW 174 (257)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEh----hhcccceEEEeHHHHHhccHHHHHHHH
Confidence 467888877 32333 4999999999999999864 232221 157888888864 34444444444
Q ss_pred H
Q 005968 551 F 551 (667)
Q Consensus 551 ~ 551 (667)
+
T Consensus 175 ~ 175 (257)
T cd06429 175 M 175 (257)
T ss_pred H
Confidence 3
No 17
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=78.43 E-value=5.7 Score=42.21 Aligned_cols=99 Identities=23% Similarity=0.291 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHCC-CCEEEEEeCCCcccccchhhhh--cccceeeecCChhhhhcCCchhhhhhhHHhhhhcCC
Q 005968 404 WMYSVRHQRGLESVLFHHR-DACVVVFSETIELDFFKDSFVK--DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (667)
Q Consensus 404 ~~f~~Rq~caIESwar~nP-D~eViLwsdt~~ld~~s~~fvk--egynV~Vv~pDl~elf~gTPLe~~~~iW~kw~kg~~ 480 (667)
.+..+...-+|.|+..++. ..++.+++++...+... .+.+ ..+++++..+++.++... . .|.
T Consensus 10 ~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~-~l~~~~~~~~~~i~f~~i~~~~~~--~--------~~~---- 74 (280)
T cd06431 10 YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILA-TLFQTWMVPAVEVSFYNAEELKSR--V--------SWI---- 74 (280)
T ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHH-HHHHhccccCcEEEEEEhHHhhhh--h--------ccC----
Confidence 4556667889999999864 47888888753322211 1222 234445555554332210 0 011
Q ss_pred cccchhhH---HHHHHHHH----hC-ceEEeCCeeEeccchhhcc
Q 005968 481 YNTHYSEL---VRLAALYK----YG-GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 481 ~~aH~SDl---lRy~iLYk----yG-GIYLDtDV~~LRPLd~Lln 517 (667)
...|.|-+ +|+.+--- +. =+|||+|++|..++.+|.+
T Consensus 75 ~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~ 119 (280)
T cd06431 75 PNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK 119 (280)
T ss_pred cccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence 11234444 68876332 32 4899999999999998764
No 18
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=73.85 E-value=3.3 Score=40.65 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=37.3
Q ss_pred hhHHHHHHHHH---hC-ceEEeCCeeEeccchhhcc------ccc-ccc------------------cCCCCcccceEEE
Q 005968 486 SELVRLAALYK---YG-GIYMDSDIIVLKSLSSLNN------SVG-MED------------------KFPGSSLNGAVMA 536 (667)
Q Consensus 486 SDllRy~iLYk---yG-GIYLDtDV~~LRPLd~Lln------fvG-~E~------------------~~~~~~InnaVma 536 (667)
.=++|+.+... +. =+|||+|++++++++.+.+ +++ .+. ......+|.|||.
T Consensus 85 ~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~l 164 (250)
T PF01501_consen 85 ATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVML 164 (250)
T ss_dssp GGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEEE
T ss_pred HHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEEE
Confidence 33456555433 22 3999999999999998754 111 111 0124679999999
Q ss_pred EccCChhHHHHHH
Q 005968 537 FRKHSPFILECLK 549 (667)
Q Consensus 537 a~pgHPfLkelLe 549 (667)
+.+...--..+.+
T Consensus 165 ~~~~~~~~~~~~~ 177 (250)
T PF01501_consen 165 FNPSKWRKENILQ 177 (250)
T ss_dssp EEHHHHHHHHHHH
T ss_pred Eeechhhhhhhhh
Confidence 9877654333333
No 19
>PLN00176 galactinol synthase
Probab=68.87 E-value=6.8 Score=42.98 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=44.2
Q ss_pred HHHHHHHHhC-ceEEeCCeeEeccchhhccc----cc-ccc-----c---------------------------CCCCcc
Q 005968 489 VRLAALYKYG-GIYMDSDIIVLKSLSSLNNS----VG-MED-----K---------------------------FPGSSL 530 (667)
Q Consensus 489 lRy~iLYkyG-GIYLDtDV~~LRPLd~Llnf----vG-~E~-----~---------------------------~~~~~I 530 (667)
+|+.-|..|- =||||+|++|+++++.|.+. ++ ... . .....+
T Consensus 105 l~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~~~~~yF 184 (333)
T PLN00176 105 LRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLYF 184 (333)
T ss_pred hhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccCCCCCeE
Confidence 4555556665 69999999999999998652 11 000 0 002369
Q ss_pred cceEEEEccCChhHHHHHHHHH
Q 005968 531 NGAVMAFRKHSPFILECLKEFY 552 (667)
Q Consensus 531 nnaVmaa~pgHPfLkelLe~~~ 552 (667)
|.|||.+.|..-....+++.+.
T Consensus 185 NSGVlvinps~~~~~~ll~~l~ 206 (333)
T PLN00176 185 NAGMFVFEPSLSTYEDLLETLK 206 (333)
T ss_pred EeEEEEEEcCHHHHHHHHHHHH
Confidence 9999999999877778887654
No 20
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=50.80 E-value=55 Score=32.35 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHhCceEEeCCeeEeccchhhc-c----c-cccccc------CCCCcccceEEEEccCChhHHHHHHHHH
Q 005968 485 YSELVRLAALYKYGGIYMDSDIIVLKSLSSLN-N----S-VGMEDK------FPGSSLNGAVMAFRKHSPFILECLKEFY 552 (667)
Q Consensus 485 ~SDllRy~iLYkyGGIYLDtDV~~LRPLd~Ll-n----f-vG~E~~------~~~~~InnaVmaa~pgHPfLkelLe~~~ 552 (667)
+..+++-.+-.-|-=+|+|+|++.+++.-++. + + +..... .....+|.|++.+.+ .|-.+++++...
T Consensus 55 K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~-t~~~~~~~~~w~ 133 (212)
T PF03407_consen 55 KPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRP-TPRTIAFLEDWL 133 (212)
T ss_pred HHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEec-CHHHHHHHHHHH
Confidence 45555544433455699999999999766554 2 1 111110 012346888888776 444444444433
Q ss_pred HhcC--CCcccccchHHHHHHHHHHhccCCCCCcccceEEcCCcCccc
Q 005968 553 LTYD--ETRLRWNGADLLQRVARRFWSVDNSYSKKFELNVQPSFFFFP 598 (667)
Q Consensus 553 ~~Yd--~~~w~~tGP~llTrvlkk~~~~~~~~~q~~~ItILP~e~FYP 598 (667)
.... +..| --.++..++.+.... .....+.++|...|--
T Consensus 134 ~~~~~~~~~~---DQ~~~n~~l~~~~~~----~~~~~~~~L~~~~f~~ 174 (212)
T PF03407_consen 134 ERMAESPGCW---DQQAFNELLREQAAR----YGGLRVRFLPPSLFPN 174 (212)
T ss_pred HHHHhCCCcc---hHHHHHHHHHhcccC----CcCcEEEEeCHHHeec
Confidence 3221 1112 235666666554211 0234588999888844
No 21
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=43.92 E-value=15 Score=26.89 Aligned_cols=15 Identities=53% Similarity=0.753 Sum_probs=11.9
Q ss_pred ccCCCCccccHHHHH
Q 005968 143 AFGSDDFPVDDEVRR 157 (667)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (667)
.|||||+--|++..|
T Consensus 1 LFGSddEeed~ea~r 15 (28)
T PF10587_consen 1 LFGSDDEEEDEEAER 15 (28)
T ss_pred CCCCccccccHHHHH
Confidence 399999988877654
No 22
>PLN02718 Probable galacturonosyltransferase
Probab=43.66 E-value=44 Score=39.63 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=64.0
Q ss_pred ccceEEEEecCCCCCCCHHHHHHHHHHHHH--CCC-CEEEEEeCCCcccccchhhhh--c--ccceeeecCChhhhhcCC
Q 005968 391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFH--HRD-ACVVVFSETIELDFFKDSFVK--D--GFKVAVAMPNLDELLKDT 463 (667)
Q Consensus 391 c~~rIff~WtSg~~~f~~Rq~caIESwar~--nPD-~eViLwsdt~~ld~~s~~fvk--e--gynV~Vv~pDl~elf~gT 463 (667)
.+..+|++..++. + .--.-+|.|...+ +|+ +.+.|+++..+..... .|.. . +..|++..+|- |..-
T Consensus 310 d~~~~Hia~~sDN--v-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk-~wf~l~~~~~a~I~V~~Idd---f~~l 382 (603)
T PLN02718 310 DPDLYHYVVFSDN--V-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAIS-MWFLLNPPGKATIQILNIDD---MNVL 382 (603)
T ss_pred CCcceeEEEEcCC--c-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHH-HHHHhCCCCCcEEEEEecch---hccc
Confidence 4456888888885 3 1234568899888 564 6667777764432212 1211 2 22466655542 2211
Q ss_pred chhhhhhhHHhhhhcCCcccchhhHHHHHHHHHhC----ceEEeCCeeEeccchhhcc
Q 005968 464 PAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 464 PLe~~~~iW~kw~kg~~~~aH~SDllRy~iLYkyG----GIYLDtDV~~LRPLd~Lln 517 (667)
|.. +.....+...........+-++|+.+---+. =||||+|++|.++|.+|.+
T Consensus 383 p~~-~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 383 PAD-YNSLLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred ccc-chhhhhhccccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 111 0000001100000112257788988743332 4899999999999999865
No 23
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=43.44 E-value=55 Score=35.99 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCC--CCEEEEEeCCCcccccchhhhh--cccc--eeeecCChhhhhcCCchhhhhhhHHhhhhcCCccc
Q 005968 410 HQRGLESVLFHHR--DACVVVFSETIELDFFKDSFVK--DGFK--VAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNT 483 (667)
Q Consensus 410 q~caIESwar~nP--D~eViLwsdt~~ld~~s~~fvk--egyn--V~Vv~pDl~elf~gTPLe~~~~iW~kw~kg~~~~a 483 (667)
-.-||.|...+|+ .+++.++.++.+.+... .+-+ +.|. +.+..+|...+ ...|.. .. .| .
T Consensus 17 ~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~-~l~~~~~~f~~~i~~~~id~~~~-~~~~~~--~~---~~-------s 82 (325)
T COG1442 17 AGVSIYSLLEHNRKIFYKFHILVDGLNEEDKK-KLNETAEPFKSFIVLEVIDIEPF-LDYPPF--TK---RF-------S 82 (325)
T ss_pred HHHHHHHHHHhCccccEEEEEEecCCCHHHHH-HHHHHHHhhccceeeEEEechhh-hccccc--cc---ch-------H
Confidence 4579999999999 89999998875543211 0111 2332 34444554433 333310 00 11 1
Q ss_pred chhhHHHHHHHHHhCc----eEEeCCeeEeccchhhcc
Q 005968 484 HYSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 484 H~SDllRy~iLYkyGG----IYLDtDV~~LRPLd~Lln 517 (667)
.+=++||.+=--+.- +|+|+|++|...|+.+..
T Consensus 83 -~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~ 119 (325)
T COG1442 83 -KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFF 119 (325)
T ss_pred -HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHh
Confidence 345677766544444 999999999999998753
No 24
>PLN02742 Probable galacturonosyltransferase
Probab=41.84 E-value=68 Score=37.59 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=60.7
Q ss_pred cCcccceEEEEecCCCCCCCHHHHHHHHHHHHHCC--CCEEEEEeCCCcccccchhhhhcccc-e--eeecCChhhhhcC
Q 005968 388 KGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHR--DACVVVFSETIELDFFKDSFVKDGFK-V--AVAMPNLDELLKD 462 (667)
Q Consensus 388 ~~~c~~rIff~WtSg~~~f~~Rq~caIESwar~nP--D~eViLwsdt~~ld~~s~~fvkegyn-V--~Vv~pDl~elf~g 462 (667)
..+++.++.|+=.++.. ..-++..|+..|| ..+|.+..-. ++. |+...|. | ++...++..++.+
T Consensus 250 nsk~P~~~VFHiVTD~~-----n~~aM~~WF~~n~~~~a~v~V~n~e-~f~-----wl~~~~~pvl~ql~~~~~~~~yf~ 318 (534)
T PLN02742 250 NAKHPDQLVFHLVTDEV-----NYGAMQAWFAMNDFKGVTVEVQKIE-EFS-----WLNASYVPVLKQLQDSDTQSYYFS 318 (534)
T ss_pred hhcCCCcEEEEEeechh-----hHHHHHHHHhhCCCCccEEEEEEec-ccc-----ccccccchHHHHhhhhhhhhhhcc
Confidence 45566677777777654 3468999999997 6666665432 221 2222221 1 0111122222211
Q ss_pred CchhhhhhhHHhhhhcCCcccchhhHHHHHHHHHhC----ceEEeCCeeEeccchhhcc
Q 005968 463 TPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 463 TPLe~~~~iW~kw~kg~~~~aH~SDllRy~iLYkyG----GIYLDtDV~~LRPLd~Lln 517 (667)
+-...- ....+.++ .......-++|+.+-.-+. =||||+|++|.+++.+|.+
T Consensus 319 ~~~~~~-~~~~k~r~--p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~ 374 (534)
T PLN02742 319 GSQDDG-KTEIKFRN--PKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFS 374 (534)
T ss_pred cccccc-cccccccC--cccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhc
Confidence 111000 00001111 1123357889988744332 4899999999999999864
No 25
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=38.48 E-value=76 Score=37.97 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHHhC----ceEEeCCeeEeccchhhcc
Q 005968 484 HYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 484 H~SDllRy~iLYkyG----GIYLDtDV~~LRPLd~Lln 517 (667)
...-++|+.+---+- =||||+|++|.++|.+|.+
T Consensus 459 S~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~ 496 (657)
T PLN02910 459 SMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 496 (657)
T ss_pred hHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHh
Confidence 357889987733332 5899999999999999864
No 26
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=34.38 E-value=19 Score=39.26 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=23.1
Q ss_pred HHHHHH---HHHh-CceEEeCCeeEeccchhhcc
Q 005968 488 LVRLAA---LYKY-GGIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 488 llRy~i---LYky-GGIYLDtDV~~LRPLd~Lln 517 (667)
+.|+.+ |-.. ==+|||+|++|+.|+++|.+
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence 778765 3332 35899999999999999765
No 27
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=27.45 E-value=61 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhccCCcc
Q 005968 13 YGAQVCALIAALLLLLSVSLLHTRLSQPNQ 42 (667)
Q Consensus 13 ~g~~~ca~~~a~lll~s~~~l~~r~s~~~~ 42 (667)
|||-+++.+|.+.+++++..+|+.++...+
T Consensus 4 ~~a~~~s~~ai~~~l~~~p~i~~~i~~~~~ 33 (53)
T PF01484_consen 4 YGAIVVSTVAILSCLITVPSIYNDIQNFQS 33 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999886654
No 28
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=25.71 E-value=34 Score=35.70 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=54.8
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHHCC-CCEEEEEeCCCcccccc--hhhhhc-ccceeeecCChhhhhcCCchhhhh
Q 005968 394 RVFMVWNSPPWMYSVRHQRGLESVLFHHR-DACVVVFSETIELDFFK--DSFVKD-GFKVAVAMPNLDELLKDTPAHEFA 469 (667)
Q Consensus 394 rIff~WtSg~~~f~~Rq~caIESwar~nP-D~eViLwsdt~~ld~~s--~~fvke-gynV~Vv~pDl~elf~gTPLe~~~ 469 (667)
+||.+ .+ ...+-.--..++-|...++. .+++.+++++..-+... ..+.+. +.++++..++....+...|...
T Consensus 2 ni~~~-~~-~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~-- 77 (248)
T cd06432 2 NIFSV-AS-GHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQ-- 77 (248)
T ss_pred eEEEE-cC-cHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccc--
Confidence 46666 22 23454556788999999864 57777777653321111 012211 3345555444222222111110
Q ss_pred hhHHhhhhcCCcccchhhHHHHHH---HHH-hC-ceEEeCCeeEeccchhhcc
Q 005968 470 SVWFEWRKTKFYNTHYSELVRLAA---LYK-YG-GIYMDSDIIVLKSLSSLNN 517 (667)
Q Consensus 470 ~iW~kw~kg~~~~aH~SDllRy~i---LYk-yG-GIYLDtDV~~LRPLd~Lln 517 (667)
. .+.+ +.|+.+ |-. .+ =+|||+|++|..++.+|.+
T Consensus 78 ----------~--~~~~-y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~ 117 (248)
T cd06432 78 ----------R--IIWG-YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMD 117 (248)
T ss_pred ----------h--hHHH-HHHHHHHHhhhhccCEEEEEcCCceecccHHHHHh
Confidence 0 0011 233322 211 22 4899999999999999864
No 29
>PF15240 Pro-rich: Proline-rich
Probab=22.31 E-value=47 Score=33.79 Aligned_cols=11 Identities=73% Similarity=0.960 Sum_probs=9.6
Q ss_pred HHHHHHHHHHh
Q 005968 24 LLLLLSVSLLH 34 (667)
Q Consensus 24 ~lll~s~~~l~ 34 (667)
||+|||||||-
T Consensus 2 LlVLLSvALLA 12 (179)
T PF15240_consen 2 LLVLLSVALLA 12 (179)
T ss_pred hhHHHHHHHHH
Confidence 78999999984
Done!