Query 005968
Match_columns 667
No_of_seqs 256 out of 958
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vk9_A Alpha-toxin; glycosyltr 99.1 2.3E-10 8E-15 126.3 11.5 42 391-434 96-137 (551)
2 2bvl_A Toxin B; glycosyltransf 99.0 5.6E-10 1.9E-14 123.1 8.6 42 391-434 94-135 (543)
3 4dmv_A Toxin A, TCDA; transfer 98.7 1.6E-08 5.5E-13 111.1 8.7 42 390-433 107-148 (556)
4 3tzt_A Glycosyl transferase fa 91.4 0.42 1.4E-05 48.5 7.9 144 393-552 4-183 (276)
5 3u2u_A Glycogenin-1, GN-1, GN1 89.3 0.39 1.3E-05 48.9 5.5 55 499-553 99-156 (263)
6 1ll2_A Glycogenin-1; protein-s 89.1 0.4 1.4E-05 50.1 5.6 54 500-553 99-155 (333)
7 3jsz_A LGT1, putative uncharac 82.6 1.2 4.1E-05 48.0 5.1 111 394-509 134-252 (525)
8 1g9r_A Glycosyl transferase; a 65.4 5.1 0.00017 40.9 4.4 134 406-553 11-179 (311)
9 1of5_B MTR2, YKL186C, mRNA tra 16.3 20 0.00067 35.2 -1.3 46 175-220 132-178 (184)
10 4gwp_D Mediator of RNA polymer 8.4 56 0.0019 30.0 -0.9 23 157-184 61-83 (121)
No 1
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22
Probab=99.10 E-value=2.3e-10 Score=126.26 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=38.3
Q ss_pred ccceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeCCCc
Q 005968 391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE 434 (667)
Q Consensus 391 c~~rIff~WtSg~~~f~~Rq~caIESwar~nPD~eViLwsdt~~ 434 (667)
.++.|||||.|+. +|..++.||+||++++|||+|++|++...
T Consensus 96 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~na 137 (551)
T 2vk9_A 96 ASKNLSFIWIGGP--ISDQSLEYYNMWKMFNKDYNIRLFYDKNS 137 (551)
T ss_dssp CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTTC
T ss_pred CCcceEEEEcCCC--CCHHHHHHHHHHHHHCcCCEEEEEeccch
Confidence 5689999999996 79999999999999999999999998743
No 2
>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A*
Probab=98.99 E-value=5.6e-10 Score=123.08 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=38.3
Q ss_pred ccceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeCCCc
Q 005968 391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE 434 (667)
Q Consensus 391 c~~rIff~WtSg~~~f~~Rq~caIESwar~nPD~eViLwsdt~~ 434 (667)
.++.||+||.++. +|..++.||+||++++|||+|++|.+...
T Consensus 94 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~na 135 (543)
T 2bvl_A 94 VEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDSNA 135 (543)
T ss_dssp CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTTC
T ss_pred CCCceEEEEeCCC--CCHHHHHHHHHHHHHCcCCEEEEEecchh
Confidence 5779999999986 79999999999999999999999998643
No 3
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A
Probab=98.73 E-value=1.6e-08 Score=111.09 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=38.0
Q ss_pred cccceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeCCC
Q 005968 390 KCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETI 433 (667)
Q Consensus 390 ~c~~rIff~WtSg~~~f~~Rq~caIESwar~nPD~eViLwsdt~ 433 (667)
..++.|||||.|+. +|..++.||+||++++|||+|++|++..
T Consensus 107 ~IPKiIHy~W~Gg~--~P~~~~kcI~sWkk~~PDYeI~lW~Dsn 148 (556)
T 4dmv_A 107 PVEKNLHFVWIGGE--VSDIALEYIKQWADINAEYNIKLWYDSE 148 (556)
T ss_dssp ECCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTT
T ss_pred ccCCceEEEecCCC--CCHHHHHHHHHHHHHCCCCeEEEEeCch
Confidence 34679999999985 7999999999999999999999999864
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=91.43 E-value=0.42 Score=48.49 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=74.5
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEeCCCcccccch--hhhh-cccceeeecCChhhhhcCCchhh
Q 005968 393 MRVFMVWNSPPWMYSVRHQRGLESVLFHHRD--ACVVVFSETIELDFFKD--SFVK-DGFKVAVAMPNLDELLKDTPAHE 467 (667)
Q Consensus 393 ~rIff~WtSg~~~f~~Rq~caIESwar~nPD--~eViLwsdt~~ld~~s~--~fvk-egynV~Vv~pDl~elf~gTPLe~ 467 (667)
+.|+.+-.++. .+-.--..+|.|+.+++++ ..+.+++++..-+.... .++. .+.+|.++.++- +.+.+.|..
T Consensus 4 m~i~I~~~~d~-~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~~~~~~- 80 (276)
T 3tzt_A 4 MADALLLTLDE-NYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFSFAKVT- 80 (276)
T ss_dssp -CEEEEEECCG-GGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred eeEEEEEEeCH-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHhcCccc-
Confidence 34555544443 4555677899999999994 55666666532211110 1111 233454444442 223332211
Q ss_pred hhhhHHhhhhcCCcccchhhHHHHHHHHHhC-----ceEEeCCeeEeccchhhcc------cccc-cccC----------
Q 005968 468 FASVWFEWRKTKFYNTHYSELVRLAALYKYG-----GIYMDSDIIVLKSLSSLNN------SVGM-EDKF---------- 525 (667)
Q Consensus 468 ~~~iW~kw~kg~~~~aH~SDllRy~iLYkyG-----GIYLDtDV~~LRPLd~Lln------fvG~-E~~~---------- 525 (667)
..+ ..+-+.|+.+-.-.. =||||+|++|++++++|.+ .+|. +...
T Consensus 81 ----------~~~---s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~ 147 (276)
T 3tzt_A 81 ----------DRY---PKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNR 147 (276)
T ss_dssp ----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC------------
T ss_pred ----------ccc---CHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHH
Confidence 001 135678887765432 4999999999999998754 2332 1110
Q ss_pred -----CCCcccceEEEEccC----ChhHHHHHHHHH
Q 005968 526 -----PGSSLNGAVMAFRKH----SPFILECLKEFY 552 (667)
Q Consensus 526 -----~~~~InnaVmaa~pg----HPfLkelLe~~~ 552 (667)
....+|.|||...+. +.+..++++.+.
T Consensus 148 ~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~ 183 (276)
T 3tzt_A 148 IRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVE 183 (276)
T ss_dssp --------CEEEEEEEEEHHHHHHHCCHHHHHHHHH
T ss_pred hcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHH
Confidence 014688888888754 345555555443
No 5
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=89.33 E-value=0.39 Score=48.91 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=42.2
Q ss_pred ceEEeCCeeEeccchhhcc---cccccccCCCCcccceEEEEccCChhHHHHHHHHHH
Q 005968 499 GIYMDSDIIVLKSLSSLNN---SVGMEDKFPGSSLNGAVMAFRKHSPFILECLKEFYL 553 (667)
Q Consensus 499 GIYLDtDV~~LRPLd~Lln---fvG~E~~~~~~~InnaVmaa~pgHPfLkelLe~~~~ 553 (667)
=+|||+|++|+++++.|.. +.+....+....+|.|||...|......++++.+.+
T Consensus 99 vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~ 156 (263)
T 3u2u_A 99 CVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASE 156 (263)
T ss_dssp EEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHh
Confidence 5999999999999999865 222222111357899999999998888888888754
No 6
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=89.12 E-value=0.4 Score=50.13 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=40.8
Q ss_pred eEEeCCeeEeccchhhcc--ccc-ccccCCCCcccceEEEEccCChhHHHHHHHHHH
Q 005968 500 IYMDSDIIVLKSLSSLNN--SVG-MEDKFPGSSLNGAVMAFRKHSPFILECLKEFYL 553 (667)
Q Consensus 500 IYLDtDV~~LRPLd~Lln--fvG-~E~~~~~~~InnaVmaa~pgHPfLkelLe~~~~ 553 (667)
||||+|++|++++++|.+ .++ .........+|.|||.+.|......++++.+.+
T Consensus 99 lYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~ 155 (333)
T 1ll2_A 99 VFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASE 155 (333)
T ss_dssp EEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHh
Confidence 999999999999999875 222 222111357999999999988888888876654
No 7
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=82.61 E-value=1.2 Score=48.04 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=68.9
Q ss_pred eEEEEecCCCC--CCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccch----hhhhcccceeeecCChhhhhcCCchhh
Q 005968 394 RVFMVWNSPPW--MYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKD----SFVKDGFKVAVAMPNLDELLKDTPAHE 467 (667)
Q Consensus 394 rIff~WtSg~~--~f~~Rq~caIESwar~nPD~eViLwsdt~~ld~~s~----~fvkegynV~Vv~pDl~elf~gTPLe~ 467 (667)
..+-+|+|... -++-.++..++-++.++|+.++.+...+.-++.-.. .|.++ -+ +..+|++.+-.+.++..
T Consensus 134 ~~~~IWFSn~P~~fMp~e~q~~Lle~re~nPG~~i~LVYsStlLn~~a~~ql~~fake-n~--IsllDids~k~e~~Lyn 210 (525)
T 3jsz_A 134 VQTSIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKK-QN--ISLIDIDSVKTDSPLYP 210 (525)
T ss_dssp EEEEECCCSSTTCSSCHHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHH-TT--EEEEEGGGCCCCCTHHH
T ss_pred ceEEEEEeCChhHhccHHHHHHHHHHHhhCCCCeEEEEeehhhcCHHHHHHHHHHHHh-cC--ceEeehhhhcchHHHHH
Confidence 45667888544 478889999999999999999988665534431100 13221 12 34556665556777764
Q ss_pred hhhh-HHhhhhcCCcccchhhHHHHHH-HHHhCceEEeCCeeEe
Q 005968 468 FASV-WFEWRKTKFYNTHYSELVRLAA-LYKYGGIYMDSDIIVL 509 (667)
Q Consensus 468 ~~~i-W~kw~kg~~~~aH~SDllRy~i-LYkyGGIYLDtDV~~L 509 (667)
++.. .....+|.. ++..||++|+.- +|.+ |.|.|.|+-+-
T Consensus 211 l~k~EL~nLg~GGN-pAaASDivRWlspv~~~-gtYtDfD~PvD 252 (525)
T 3jsz_A 211 LIKAELANLGMGGN-PAAASDLCRWIPELFNE-GFYVDIDLPVD 252 (525)
T ss_dssp HHHHHHHTTTTTCC-HHHHHHHHTTCTTTCSS-EEEECTTCCBC
T ss_pred HHHHHHHhccCCCC-HHHHHHHHHhhHHhccc-Cceeeeecccc
Confidence 4322 111223332 456799999864 4555 99999998554
No 8
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=65.40 E-value=5.1 Score=40.86 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHH-HHHC-CCCEEEEEeCCCcccccc--hhhhh-cccceeeecCChhhhhcCCchhhhhhhHHhhhhcCC
Q 005968 406 YSVRHQRGLESV-LFHH-RDACVVVFSETIELDFFK--DSFVK-DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (667)
Q Consensus 406 f~~Rq~caIESw-ar~n-PD~eViLwsdt~~ld~~s--~~fvk-egynV~Vv~pDl~elf~gTPLe~~~~iW~kw~kg~~ 480 (667)
+-.--..++.|+ .+++ .+..+.+++++..-+... ..++. .+..|.++.++.. .+.+.|.. .+.+
T Consensus 11 Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~~~~~~~~----------~~~~ 79 (311)
T 1g9r_A 11 YAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-DFAGFPLN----------IRHI 79 (311)
T ss_dssp GHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-GGTTSCCC----------CTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-HHhcCccc----------cccC
Confidence 344456788999 5544 356677777653211100 01111 1344555555432 22332321 0000
Q ss_pred cccchhhHHHHHHHHHhC----ceEEeCCeeEeccchhhcc------ccccccc----------------CCCCcccceE
Q 005968 481 YNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN------SVGMEDK----------------FPGSSLNGAV 534 (667)
Q Consensus 481 ~~aH~SDllRy~iLYkyG----GIYLDtDV~~LRPLd~Lln------fvG~E~~----------------~~~~~InnaV 534 (667)
..+=+.|+.+-.-.. =||||+|++|++++++|.+ .+|.-.. .....+|.||
T Consensus 80 ---s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv 156 (311)
T 1g9r_A 80 ---SITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGV 156 (311)
T ss_dssp ---CGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEE
T ss_pred ---CHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeee
Confidence 023345555433333 3999999999999999864 2332100 1124789999
Q ss_pred EEEccC----ChhHHHHHHHHHH
Q 005968 535 MAFRKH----SPFILECLKEFYL 553 (667)
Q Consensus 535 maa~pg----HPfLkelLe~~~~ 553 (667)
|.+.+. +.+..++++.+..
T Consensus 157 ~linl~~~r~~~~~~~~~~~~~~ 179 (311)
T 1g9r_A 157 LLINLKKWRRHDIFKMSSEWVEQ 179 (311)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHH
T ss_pred eeeeHHHHHhcchHHHHHHHHHh
Confidence 999764 3455666665443
No 9
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=16.30 E-value=20 Score=35.17 Aligned_cols=46 Identities=20% Similarity=0.529 Sum_probs=29.3
Q ss_pred CCCCcccchhhhhcccchhhhhccccccccc-cccCCCCCCCCCCCC
Q 005968 175 KGKSPLREKWGEWFDKKGEFLRRDKMFKSHL-EVLNPMNNPLLQDPD 220 (667)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 220 (667)
++..+-|.-||.||----.-.--+|.++..+ |+++++|=-|.--|+
T Consensus 132 ~~~~~~Rp~wg~~fGvsl~lv~de~i~~~d~~~~Iss~ny~~~y~P~ 178 (184)
T 1of5_B 132 NDMNKPRPLWGPYFGISLQLIIDDRIFRNDFNGVISGFNYNMVYKPE 178 (184)
T ss_dssp ---------CCCCEEEEEEEEEEGGGGGTCCTTCEEEEEEEEEECCC
T ss_pred ccCCCCCcccccccceEEEEEEechhhcCchhhhhhccceEEEEccc
Confidence 3456778889999977766667788888888 999988866655554
No 10
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=8.42 E-value=56 Score=29.97 Aligned_cols=23 Identities=39% Similarity=0.931 Sum_probs=19.5
Q ss_pred HhhcccchhhhhhhhccCCCCCcccchh
Q 005968 157 RKMTLVKDIEDALLLKTGKGKSPLREKW 184 (667)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (667)
+-+..|+||.|-|.|- -.+||||
T Consensus 61 qTmQLIKgvQDLLvlT-----RsIREKW 83 (121)
T 4gwp_D 61 QTMQLIKNVQDLLILT-----RSIKEKW 83 (121)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4466799999999998 7889997
Done!