Query 005969
Match_columns 667
No_of_seqs 568 out of 2710
Neff 11.8
Searched_HMMs 46136
Date Thu Mar 28 16:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.2E-92 1.1E-96 762.4 70.6 630 2-666 47-682 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.7E-81 3.6E-86 680.5 64.9 572 1-611 147-728 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.1E-68 2.4E-73 566.6 58.2 536 3-642 367-916 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 7.4E-66 1.6E-70 544.9 55.2 472 104-609 85-563 (697)
5 PLN03081 pentatricopeptide (PP 100.0 3.9E-66 8.4E-71 547.1 50.5 580 4-657 85-696 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2E-64 4.3E-69 534.4 54.9 494 137-665 366-904 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-34 3.8E-39 323.0 67.5 647 3-666 190-896 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-33 3.4E-38 315.3 67.5 647 3-666 156-862 (899)
9 PRK11447 cellulose synthase su 100.0 8.6E-24 1.9E-28 235.7 55.5 595 3-635 59-737 (1157)
10 PRK11447 cellulose synthase su 100.0 2E-23 4.2E-28 232.8 57.8 607 13-666 35-736 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 4.1E-20 8.9E-25 196.5 57.0 601 4-642 76-745 (987)
12 PRK09782 bacteriophage N4 rece 99.9 4.4E-20 9.5E-25 196.3 56.0 611 18-664 56-734 (987)
13 KOG2002 TPR-containing nuclear 99.9 3.2E-17 6.8E-22 163.1 45.0 622 6-635 41-742 (1018)
14 KOG4626 O-linked N-acetylgluco 99.8 4.1E-17 8.8E-22 154.0 35.4 436 109-620 51-501 (966)
15 KOG4422 Uncharacterized conser 99.8 2.7E-16 5.9E-21 141.9 37.8 335 106-504 116-466 (625)
16 PRK11788 tetratricopeptide rep 99.8 2.6E-18 5.7E-23 171.3 28.2 289 50-343 46-354 (389)
17 KOG4422 Uncharacterized conser 99.8 2.6E-16 5.6E-21 142.1 36.6 309 6-359 116-450 (625)
18 KOG4626 O-linked N-acetylgluco 99.8 1.6E-17 3.5E-22 156.7 28.4 432 145-652 52-501 (966)
19 PRK11788 tetratricopeptide rep 99.8 2.2E-17 4.7E-22 164.7 29.7 228 378-610 112-354 (389)
20 KOG4318 Bicoid mRNA stability 99.8 2.6E-15 5.7E-20 147.8 36.0 253 24-292 8-286 (1088)
21 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-15 8.1E-20 156.4 40.3 414 108-600 129-569 (615)
22 TIGR00990 3a0801s09 mitochondr 99.8 8E-15 1.7E-19 154.0 41.2 243 385-635 306-568 (615)
23 KOG2002 TPR-containing nuclear 99.8 6.1E-14 1.3E-18 140.1 42.9 223 378-602 501-745 (1018)
24 PRK10049 pgaA outer membrane p 99.8 4.8E-14 1E-18 150.8 45.9 125 178-305 51-178 (765)
25 PRK15174 Vi polysaccharide exp 99.8 2.6E-14 5.7E-19 149.3 41.2 322 209-602 44-381 (656)
26 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.3E-18 142.3 46.6 199 443-644 299-520 (822)
27 PRK15174 Vi polysaccharide exp 99.7 5.4E-15 1.2E-19 154.5 32.7 323 9-338 45-383 (656)
28 PRK10049 pgaA outer membrane p 99.7 1.5E-13 3.2E-18 147.1 42.4 385 54-464 30-455 (765)
29 PRK14574 hmsH outer membrane p 99.7 5.3E-13 1.1E-17 139.8 43.3 436 84-575 43-519 (822)
30 KOG2003 TPR repeat-containing 99.7 1.1E-13 2.4E-18 126.2 29.3 450 144-634 204-718 (840)
31 KOG2076 RNA polymerase III tra 99.7 1.1E-11 2.3E-16 123.6 44.8 609 51-666 151-891 (895)
32 KOG0495 HAT repeat protein [RN 99.7 2.6E-10 5.7E-15 109.5 50.6 590 21-667 218-877 (913)
33 KOG4318 Bicoid mRNA stability 99.7 8.6E-13 1.9E-17 130.5 34.7 608 3-655 22-753 (1088)
34 KOG2003 TPR repeat-containing 99.7 3.1E-13 6.6E-18 123.4 29.4 168 417-588 536-709 (840)
35 KOG2076 RNA polymerase III tra 99.6 5.9E-11 1.3E-15 118.4 43.4 529 85-650 149-782 (895)
36 KOG0495 HAT repeat protein [RN 99.6 3.7E-10 8.1E-15 108.5 46.7 438 120-599 420-877 (913)
37 KOG1915 Cell cycle control pro 99.5 2.1E-09 4.7E-14 99.4 40.1 493 73-636 71-623 (677)
38 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3E-18 129.5 10.8 211 446-665 54-272 (280)
39 PRK10747 putative protoheme IX 99.5 1.1E-10 2.3E-15 115.1 29.7 274 386-666 97-386 (398)
40 KOG1155 Anaphase-promoting com 99.5 7.3E-10 1.6E-14 102.3 31.3 293 359-656 248-555 (559)
41 PRK10747 putative protoheme IX 99.5 8.4E-11 1.8E-15 115.8 27.7 249 380-635 125-387 (398)
42 PF13429 TPR_15: Tetratricopep 99.4 8.5E-13 1.9E-17 124.2 12.2 252 378-635 13-274 (280)
43 KOG2047 mRNA splicing factor [ 99.4 3.9E-08 8.4E-13 94.9 43.0 504 148-658 109-711 (835)
44 TIGR00540 hemY_coli hemY prote 99.4 1.7E-10 3.8E-15 114.4 29.0 276 384-666 95-395 (409)
45 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.6E-15 113.1 26.7 255 378-635 123-396 (409)
46 KOG1915 Cell cycle control pro 99.4 2E-08 4.3E-13 93.2 36.2 420 190-647 87-546 (677)
47 KOG0547 Translocase of outer m 99.4 4.9E-09 1.1E-13 97.6 30.9 395 210-635 118-563 (606)
48 KOG1126 DNA-binding cell divis 99.4 6.2E-11 1.3E-15 114.5 19.2 263 389-662 335-612 (638)
49 KOG0985 Vesicle coat protein c 99.4 9.2E-08 2E-12 96.9 41.4 541 78-662 609-1270(1666)
50 COG2956 Predicted N-acetylgluc 99.4 4.8E-10 1E-14 98.6 22.6 251 378-635 74-344 (389)
51 KOG0547 Translocase of outer m 99.3 9E-09 1.9E-13 95.9 31.1 409 109-599 118-563 (606)
52 KOG1155 Anaphase-promoting com 99.3 1.8E-08 4E-13 93.3 32.2 354 172-599 160-533 (559)
53 COG3071 HemY Uncharacterized e 99.3 3.6E-09 7.7E-14 96.3 27.3 274 385-666 96-386 (400)
54 PF13041 PPR_2: PPR repeat fam 99.3 5.9E-12 1.3E-16 81.9 6.7 50 536-585 1-50 (50)
55 COG3071 HemY Uncharacterized e 99.3 7.5E-09 1.6E-13 94.2 28.6 290 219-571 96-394 (400)
56 KOG1126 DNA-binding cell divis 99.3 4.6E-10 1E-14 108.6 22.1 188 404-599 420-617 (638)
57 COG2956 Predicted N-acetylgluc 99.3 1.7E-09 3.6E-14 95.3 23.5 267 385-655 47-329 (389)
58 KOG3616 Selective LIM binding 99.3 1.4E-07 3E-12 92.5 38.7 368 80-534 562-935 (1636)
59 PF13041 PPR_2: PPR repeat fam 99.3 6.1E-12 1.3E-16 81.9 6.4 50 434-483 1-50 (50)
60 KOG1173 Anaphase-promoting com 99.3 9.2E-09 2E-13 97.7 29.0 480 54-620 31-533 (611)
61 KOG1173 Anaphase-promoting com 99.3 2.6E-08 5.7E-13 94.7 31.3 281 368-654 239-535 (611)
62 KOG2047 mRNA splicing factor [ 99.2 4.4E-06 9.5E-11 81.2 44.0 529 56-626 81-711 (835)
63 KOG3616 Selective LIM binding 99.2 2E-06 4.4E-11 84.6 39.6 519 84-654 741-1373(1636)
64 KOG1156 N-terminal acetyltrans 99.2 5.4E-06 1.2E-10 80.8 42.1 539 85-636 51-686 (700)
65 KOG0985 Vesicle coat protein c 99.2 9.3E-06 2E-10 83.0 46.8 604 11-663 486-1216(1666)
66 TIGR02521 type_IV_pilW type IV 99.2 1.2E-08 2.6E-13 93.9 22.6 194 436-635 31-229 (234)
67 KOG3785 Uncharacterized conser 99.2 4.4E-08 9.6E-13 87.5 24.4 145 84-236 31-180 (557)
68 TIGR02521 type_IV_pilW type IV 99.1 1.3E-08 2.7E-13 93.8 21.1 190 409-600 35-230 (234)
69 KOG2376 Signal recognition par 99.1 3.3E-06 7.3E-11 81.3 36.7 171 422-599 324-517 (652)
70 KOG2376 Signal recognition par 99.1 2.8E-06 6.1E-11 81.7 35.5 450 113-636 19-518 (652)
71 KOG3785 Uncharacterized conser 99.1 6.1E-07 1.3E-11 80.4 29.1 201 452-664 270-484 (557)
72 KOG3617 WD40 and TPR repeat-co 99.1 4.3E-06 9.4E-11 83.4 36.5 208 5-233 756-993 (1416)
73 PRK12370 invasion protein regu 99.0 3.1E-08 6.7E-13 102.4 22.1 241 54-305 276-534 (553)
74 KOG1840 Kinesin light chain [C 99.0 1.3E-07 2.8E-12 93.0 24.9 98 377-499 287-395 (508)
75 PF12569 NARP1: NMDA receptor- 99.0 1.1E-05 2.3E-10 80.7 37.6 95 210-307 197-292 (517)
76 KOG1156 N-terminal acetyltrans 99.0 5.4E-06 1.2E-10 80.8 33.2 89 543-635 376-465 (700)
77 KOG1174 Anaphase-promoting com 99.0 4.8E-06 1E-10 76.5 31.0 261 372-640 231-503 (564)
78 PRK12370 invasion protein regu 99.0 5.2E-08 1.1E-12 100.7 21.2 143 421-566 320-469 (553)
79 PF12569 NARP1: NMDA receptor- 99.0 2.5E-06 5.3E-11 85.2 31.2 123 440-566 198-333 (517)
80 COG3063 PilF Tfp pilus assembl 99.0 2.3E-07 5.1E-12 78.2 19.9 202 439-647 38-246 (250)
81 KOG1129 TPR repeat-containing 99.0 2.7E-08 5.8E-13 87.9 14.9 219 411-635 229-455 (478)
82 KOG1129 TPR repeat-containing 99.0 3.6E-08 7.7E-13 87.1 15.4 219 377-599 227-455 (478)
83 KOG4162 Predicted calmodulin-b 99.0 3.3E-05 7.2E-10 77.1 37.2 123 540-667 652-780 (799)
84 KOG1840 Kinesin light chain [C 98.9 1.6E-07 3.4E-12 92.3 19.6 189 477-665 247-474 (508)
85 KOG1174 Anaphase-promoting com 98.9 8.9E-06 1.9E-10 74.8 28.9 259 400-665 227-495 (564)
86 KOG4162 Predicted calmodulin-b 98.9 1.9E-05 4E-10 78.8 32.7 117 414-534 659-781 (799)
87 KOG3617 WD40 and TPR repeat-co 98.9 0.00018 3.8E-09 72.5 39.7 239 74-334 725-994 (1416)
88 COG3063 PilF Tfp pilus assembl 98.8 1.2E-06 2.6E-11 74.1 19.6 185 473-661 37-227 (250)
89 PF04733 Coatomer_E: Coatomer 98.7 4.4E-07 9.5E-12 84.1 14.7 250 381-640 9-268 (290)
90 KOG4340 Uncharacterized conser 98.7 3.2E-05 6.9E-10 68.0 24.8 191 78-274 13-210 (459)
91 PRK11189 lipoprotein NlpI; Pro 98.7 1.7E-06 3.7E-11 81.6 18.7 214 15-236 35-265 (296)
92 PRK11189 lipoprotein NlpI; Pro 98.7 5.6E-06 1.2E-10 78.2 21.5 203 437-647 65-276 (296)
93 PF12854 PPR_1: PPR repeat 98.7 3.8E-08 8.3E-13 57.0 3.9 32 568-599 2-33 (34)
94 PF04733 Coatomer_E: Coatomer 98.6 1.1E-06 2.4E-11 81.5 15.3 145 419-572 116-268 (290)
95 KOG4340 Uncharacterized conser 98.6 0.00014 3E-09 64.2 25.9 343 144-532 13-371 (459)
96 cd05804 StaR_like StaR_like; a 98.6 0.00011 2.5E-09 72.3 29.0 215 419-635 94-333 (355)
97 KOG1127 TPR repeat-containing 98.6 0.0013 2.9E-08 68.0 35.9 248 384-635 827-1101(1238)
98 cd05804 StaR_like StaR_like; a 98.6 0.0001 2.3E-09 72.5 28.2 196 5-203 5-213 (355)
99 PF12854 PPR_1: PPR repeat 98.6 8.5E-08 1.8E-12 55.6 3.6 33 604-636 2-34 (34)
100 KOG1127 TPR repeat-containing 98.5 0.00048 1E-08 71.1 30.3 159 108-270 494-658 (1238)
101 KOG1914 mRNA cleavage and poly 98.5 0.0017 3.6E-08 62.7 37.7 175 452-627 347-528 (656)
102 PRK04841 transcriptional regul 98.5 0.0027 5.8E-08 71.4 39.0 161 442-602 579-760 (903)
103 KOG1125 TPR repeat-containing 98.4 9.3E-06 2E-10 78.2 15.7 249 381-633 293-566 (579)
104 PRK14720 transcript cleavage f 98.4 0.0045 9.7E-08 65.8 41.4 40 573-612 582-621 (906)
105 KOG1128 Uncharacterized conser 98.3 3E-05 6.5E-10 76.9 16.2 216 401-635 394-613 (777)
106 KOG3081 Vesicle coat complex C 98.3 0.00023 5E-09 62.0 19.4 245 381-635 16-268 (299)
107 KOG0624 dsRNA-activated protei 98.3 0.00067 1.4E-08 61.3 22.9 304 277-635 38-367 (504)
108 KOG1128 Uncharacterized conser 98.3 4.9E-05 1.1E-09 75.5 17.1 236 369-620 394-634 (777)
109 KOG1070 rRNA processing protei 98.3 0.00019 4.1E-09 76.6 22.0 217 373-590 1458-1688(1710)
110 PF07079 DUF1347: Protein of u 98.3 0.0042 9.1E-08 58.7 34.8 205 436-649 298-533 (549)
111 TIGR03302 OM_YfiO outer membra 98.3 5.6E-05 1.2E-09 69.3 16.5 183 434-636 31-230 (235)
112 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.7E-11 50.9 4.6 35 7-41 1-35 (35)
113 PRK04841 transcriptional regul 98.2 0.0018 4E-08 72.8 31.3 221 115-335 383-640 (903)
114 TIGR03302 OM_YfiO outer membra 98.2 0.00012 2.6E-09 67.1 17.9 182 403-602 31-232 (235)
115 KOG3081 Vesicle coat complex C 98.2 0.00052 1.1E-08 59.9 19.2 136 380-521 115-255 (299)
116 COG5010 TadD Flp pilus assembl 98.2 0.00032 7E-09 61.2 18.1 156 475-636 70-229 (257)
117 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.1E-05 1.1E-09 72.9 14.7 129 508-639 170-298 (395)
118 KOG2053 Mitochondrial inherita 98.2 0.013 2.8E-07 60.5 39.4 161 473-639 438-609 (932)
119 COG5010 TadD Flp pilus assembl 98.2 0.00022 4.7E-09 62.2 16.8 156 506-665 66-226 (257)
120 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.3E-11 49.5 4.2 34 6-39 1-34 (34)
121 PRK10370 formate-dependent nit 98.2 0.00026 5.5E-09 62.0 17.6 152 443-612 23-181 (198)
122 KOG1125 TPR repeat-containing 98.2 0.00027 5.8E-09 68.6 18.8 243 412-663 292-564 (579)
123 PRK15359 type III secretion sy 98.2 4.5E-05 9.8E-10 62.9 12.1 91 541-635 27-118 (144)
124 KOG0548 Molecular co-chaperone 98.1 0.0052 1.1E-07 59.4 26.9 99 50-151 13-114 (539)
125 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 9.9E-11 49.4 4.5 34 437-470 1-34 (35)
126 KOG1070 rRNA processing protei 98.1 0.00025 5.5E-09 75.7 19.6 197 72-305 1455-1662(1710)
127 KOG0624 dsRNA-activated protei 98.1 0.0064 1.4E-07 55.3 28.4 90 181-272 43-136 (504)
128 PF13812 PPR_3: Pentatricopept 98.1 6.2E-06 1.3E-10 48.4 4.4 34 436-469 1-34 (34)
129 KOG0548 Molecular co-chaperone 98.1 0.006 1.3E-07 59.0 26.3 228 411-653 230-471 (539)
130 PRK14720 transcript cleavage f 98.1 0.0012 2.7E-08 69.9 23.3 235 373-638 31-287 (906)
131 KOG2041 WD40 repeat protein [G 98.0 0.017 3.6E-07 57.8 28.3 62 538-599 1021-1083(1189)
132 PRK10370 formate-dependent nit 98.0 0.0005 1.1E-08 60.2 16.5 124 449-576 52-181 (198)
133 PRK15359 type III secretion sy 98.0 0.00036 7.7E-09 57.6 13.8 88 510-599 27-118 (144)
134 COG4783 Putative Zn-dependent 97.9 0.0016 3.5E-08 62.2 19.1 81 443-527 347-428 (484)
135 KOG3060 Uncharacterized conser 97.9 0.0051 1.1E-07 53.5 20.3 185 449-639 25-222 (289)
136 KOG1914 mRNA cleavage and poly 97.9 0.025 5.5E-07 55.0 33.8 144 487-635 347-498 (656)
137 COG4783 Putative Zn-dependent 97.9 0.0028 6E-08 60.7 20.3 152 481-654 316-475 (484)
138 PLN02789 farnesyltranstransfer 97.9 0.011 2.4E-07 55.9 23.9 44 489-534 126-169 (320)
139 PRK15179 Vi polysaccharide bio 97.9 0.0011 2.5E-08 69.3 18.9 142 71-214 82-229 (694)
140 PF01535 PPR: PPR repeat; Int 97.9 2.2E-05 4.7E-10 44.8 3.6 31 7-37 1-31 (31)
141 PRK15179 Vi polysaccharide bio 97.9 0.0015 3.2E-08 68.6 19.4 129 402-534 83-215 (694)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00054 1.2E-08 66.0 14.3 118 414-534 178-295 (395)
143 PLN02789 farnesyltranstransfer 97.8 0.0084 1.8E-07 56.8 21.8 205 377-585 41-267 (320)
144 TIGR02552 LcrH_SycD type III s 97.8 0.00078 1.7E-08 55.3 13.0 89 476-566 22-113 (135)
145 PF01535 PPR: PPR repeat; Int 97.8 3.7E-05 8E-10 43.9 3.5 31 437-467 1-31 (31)
146 PF09976 TPR_21: Tetratricopep 97.8 0.00082 1.8E-08 55.8 12.8 88 544-634 54-143 (145)
147 TIGR02552 LcrH_SycD type III s 97.7 0.00051 1.1E-08 56.4 11.4 91 508-599 18-111 (135)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0015 3.3E-08 54.2 13.3 124 540-667 14-144 (145)
149 PF10037 MRP-S27: Mitochondria 97.6 0.0006 1.3E-08 66.0 11.7 116 506-622 65-186 (429)
150 PF08579 RPM2: Mitochondrial r 97.6 0.00078 1.7E-08 50.4 8.8 80 210-289 28-116 (120)
151 PF08579 RPM2: Mitochondrial r 97.5 0.0011 2.5E-08 49.5 9.2 80 109-188 28-116 (120)
152 PF10037 MRP-S27: Mitochondria 97.5 0.0011 2.3E-08 64.3 11.2 83 208-290 104-186 (429)
153 KOG1538 Uncharacterized conser 97.4 0.029 6.4E-07 55.6 19.7 56 513-568 779-847 (1081)
154 PF04840 Vps16_C: Vps16, C-ter 97.4 0.12 2.6E-06 48.9 27.5 106 407-529 179-284 (319)
155 PF12895 Apc3: Anaphase-promot 97.4 0.00032 7E-09 51.6 5.1 80 551-634 2-83 (84)
156 PF14938 SNAP: Soluble NSF att 97.4 0.0071 1.5E-07 56.8 15.1 163 486-649 89-276 (282)
157 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0046 1E-07 49.3 12.2 93 541-635 5-102 (119)
158 KOG2280 Vacuolar assembly/sort 97.3 0.24 5.1E-06 50.6 26.8 334 133-529 424-792 (829)
159 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0053 1.1E-07 48.9 11.8 92 509-602 4-105 (119)
160 cd00189 TPR Tetratricopeptide 97.3 0.0027 5.9E-08 48.1 9.5 91 542-635 4-94 (100)
161 PF04840 Vps16_C: Vps16, C-ter 97.3 0.18 3.9E-06 47.7 28.1 126 509-654 179-304 (319)
162 KOG1538 Uncharacterized conser 97.3 0.025 5.4E-07 56.1 17.2 91 532-636 741-831 (1081)
163 KOG3060 Uncharacterized conser 97.2 0.018 4E-07 50.2 14.3 185 19-207 25-222 (289)
164 PF06239 ECSIT: Evolutionarily 97.2 0.0032 6.9E-08 53.7 9.5 89 535-624 44-153 (228)
165 KOG2796 Uncharacterized conser 97.2 0.043 9.4E-07 48.1 16.2 235 6-249 69-326 (366)
166 PF05843 Suf: Suppressor of fo 97.2 0.0017 3.6E-08 60.7 8.5 142 472-619 2-150 (280)
167 PF14938 SNAP: Soluble NSF att 97.2 0.079 1.7E-06 49.8 19.6 107 438-544 157-274 (282)
168 COG3898 Uncharacterized membra 97.2 0.17 3.7E-06 47.4 20.4 246 18-276 132-397 (531)
169 PF06239 ECSIT: Evolutionarily 97.1 0.0043 9.2E-08 53.0 9.5 96 96-191 35-153 (228)
170 PLN03088 SGT1, suppressor of 97.1 0.0073 1.6E-07 58.7 12.5 84 515-600 10-97 (356)
171 PRK15363 pathogenicity island 97.1 0.015 3.2E-07 47.5 11.9 98 506-604 34-134 (157)
172 PF12688 TPR_5: Tetratrico pep 97.1 0.013 2.9E-07 45.9 11.2 107 544-651 7-116 (120)
173 PF14559 TPR_19: Tetratricopep 97.1 0.002 4.4E-08 45.1 6.2 58 586-645 4-62 (68)
174 PF12895 Apc3: Anaphase-promot 97.1 0.0013 2.9E-08 48.3 5.3 80 449-531 2-82 (84)
175 PRK02603 photosystem I assembl 97.0 0.016 3.5E-07 49.8 12.6 129 436-587 35-165 (172)
176 cd00189 TPR Tetratricopeptide 97.0 0.0088 1.9E-07 45.1 9.8 90 440-532 4-93 (100)
177 PRK15363 pathogenicity island 97.0 0.018 3.9E-07 47.0 11.2 104 528-635 24-129 (157)
178 COG4700 Uncharacterized protei 96.9 0.18 3.8E-06 42.0 16.7 130 467-599 85-219 (251)
179 PF05843 Suf: Suppressor of fo 96.9 0.0088 1.9E-07 55.9 10.9 141 508-649 2-148 (280)
180 PRK02603 photosystem I assembl 96.9 0.018 3.9E-07 49.4 12.0 81 506-588 34-121 (172)
181 KOG2053 Mitochondrial inherita 96.9 0.71 1.5E-05 48.4 41.8 81 18-102 21-104 (932)
182 PF12688 TPR_5: Tetratrico pep 96.9 0.037 8E-07 43.4 12.3 107 442-548 7-116 (120)
183 PRK10153 DNA-binding transcrip 96.9 0.032 6.9E-07 56.8 14.9 36 434-471 335-375 (517)
184 PF07079 DUF1347: Protein of u 96.8 0.49 1.1E-05 45.5 33.8 58 548-613 472-529 (549)
185 PLN03088 SGT1, suppressor of 96.8 0.024 5.2E-07 55.1 13.0 89 443-534 9-97 (356)
186 PRK10153 DNA-binding transcrip 96.8 0.077 1.7E-06 54.1 16.6 130 466-599 332-479 (517)
187 KOG0553 TPR repeat-containing 96.7 0.014 3E-07 52.5 9.6 92 517-613 91-186 (304)
188 CHL00033 ycf3 photosystem I as 96.7 0.026 5.7E-07 48.2 11.3 59 541-599 38-98 (168)
189 PRK10866 outer membrane biogen 96.7 0.26 5.7E-06 44.8 18.1 179 442-635 38-238 (243)
190 CHL00033 ycf3 photosystem I as 96.6 0.05 1.1E-06 46.5 12.5 80 437-518 36-117 (168)
191 PF14559 TPR_19: Tetratricopep 96.6 0.006 1.3E-07 42.6 5.5 52 549-602 2-54 (68)
192 PF03704 BTAD: Bacterial trans 96.5 0.037 8E-07 46.0 10.6 73 540-613 64-140 (146)
193 PF08631 SPO22: Meiosis protei 96.5 0.63 1.4E-05 43.6 19.7 181 451-633 51-270 (278)
194 KOG1130 Predicted G-alpha GTPa 96.5 0.051 1.1E-06 51.0 11.8 127 473-599 197-341 (639)
195 COG4700 Uncharacterized protei 96.5 0.33 7.2E-06 40.5 15.0 123 505-632 87-216 (251)
196 PF12921 ATP13: Mitochondrial 96.4 0.037 8E-07 43.9 9.2 100 507-622 2-101 (126)
197 KOG2796 Uncharacterized conser 96.4 0.22 4.8E-06 43.9 14.3 135 439-576 180-322 (366)
198 KOG0553 TPR repeat-containing 96.3 0.04 8.7E-07 49.6 10.0 91 483-577 93-186 (304)
199 PF12921 ATP13: Mitochondrial 96.3 0.031 6.7E-07 44.3 8.5 57 602-658 45-105 (126)
200 KOG2041 WD40 repeat protein [G 96.3 1.5 3.3E-05 44.6 25.7 119 38-166 689-821 (1189)
201 PF13414 TPR_11: TPR repeat; P 96.3 0.02 4.3E-07 40.1 6.7 62 537-600 2-65 (69)
202 PF13432 TPR_16: Tetratricopep 96.3 0.018 3.9E-07 39.7 6.2 57 544-602 3-60 (65)
203 PRK10803 tol-pal system protei 96.3 0.051 1.1E-06 49.8 10.7 85 549-635 154-243 (263)
204 COG4235 Cytochrome c biogenesi 96.2 0.16 3.5E-06 46.1 13.4 97 504-602 153-256 (287)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.3 2.8E-05 42.6 34.2 145 436-585 397-547 (660)
206 PRK10866 outer membrane biogen 96.1 1.1 2.3E-05 40.9 20.6 60 111-172 37-100 (243)
207 PF09205 DUF1955: Domain of un 96.1 0.51 1.1E-05 36.9 13.6 64 540-605 88-151 (161)
208 PF13281 DUF4071: Domain of un 96.0 0.98 2.1E-05 43.4 18.2 161 474-636 144-332 (374)
209 PF13414 TPR_11: TPR repeat; P 95.8 0.027 5.9E-07 39.4 5.5 62 572-635 2-64 (69)
210 PF13525 YfiO: Outer membrane 95.8 0.3 6.5E-06 43.2 13.3 175 445-629 14-198 (203)
211 PF13432 TPR_16: Tetratricopep 95.8 0.025 5.5E-07 39.0 5.2 55 513-567 3-60 (65)
212 PRK10803 tol-pal system protei 95.8 0.14 2.9E-06 47.1 11.2 92 509-602 145-246 (263)
213 COG1729 Uncharacterized protei 95.7 0.087 1.9E-06 47.2 9.1 93 540-635 144-241 (262)
214 PF13525 YfiO: Outer membrane 95.6 1.4 3.1E-05 38.9 17.9 54 481-534 15-69 (203)
215 COG4235 Cytochrome c biogenesi 95.6 0.093 2E-06 47.6 9.2 96 3-102 153-254 (287)
216 KOG1130 Predicted G-alpha GTPa 95.6 0.12 2.5E-06 48.7 9.9 131 436-566 195-343 (639)
217 PF13424 TPR_12: Tetratricopep 95.5 0.035 7.5E-07 40.0 5.2 60 575-634 7-71 (78)
218 PF13371 TPR_9: Tetratricopept 95.5 0.051 1.1E-06 38.5 6.0 54 546-601 3-57 (73)
219 PF13281 DUF4071: Domain of un 95.4 2.8 6.1E-05 40.4 19.3 159 441-600 146-332 (374)
220 PF03704 BTAD: Bacterial trans 95.3 0.076 1.6E-06 44.1 7.4 71 507-577 62-140 (146)
221 PF13424 TPR_12: Tetratricopep 95.3 0.035 7.6E-07 40.0 4.6 61 540-600 7-73 (78)
222 PF13371 TPR_9: Tetratricopept 95.2 0.087 1.9E-06 37.3 6.4 57 444-501 3-59 (73)
223 PF10300 DUF3808: Protein of u 94.9 0.45 9.8E-06 48.2 12.8 159 475-636 192-374 (468)
224 KOG3941 Intermediate in Toll s 94.9 0.27 5.8E-06 43.9 9.5 97 95-191 54-173 (406)
225 KOG2280 Vacuolar assembly/sort 94.8 5.8 0.00013 41.2 33.0 111 509-635 686-796 (829)
226 PF09205 DUF1955: Domain of un 94.8 1.3 2.9E-05 34.7 11.7 137 117-274 13-152 (161)
227 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.73 1.6E-05 45.0 12.4 64 504-567 72-141 (453)
228 KOG3941 Intermediate in Toll s 94.6 0.32 6.9E-06 43.5 9.1 109 196-304 54-186 (406)
229 PRK15331 chaperone protein Sic 94.3 0.37 8E-06 39.7 8.4 83 517-600 47-132 (165)
230 PF04053 Coatomer_WDAD: Coatom 94.2 1.3 2.9E-05 44.2 13.7 159 114-303 269-428 (443)
231 PF04097 Nic96: Nup93/Nic96; 94.1 4.6 9.9E-05 42.8 18.3 47 209-256 113-159 (613)
232 smart00299 CLH Clathrin heavy 94.1 2 4.3E-05 35.2 12.8 125 509-653 9-137 (140)
233 KOG1585 Protein required for f 94.1 4 8.7E-05 36.1 15.1 84 8-100 33-116 (308)
234 KOG0543 FKBP-type peptidyl-pro 93.8 0.6 1.3E-05 44.4 9.8 94 538-635 257-352 (397)
235 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.81 1.8E-05 44.7 10.9 66 469-536 73-141 (453)
236 KOG1585 Protein required for f 93.7 1.4 3.1E-05 38.7 11.2 56 576-632 193-250 (308)
237 PF08631 SPO22: Meiosis protei 93.7 6.1 0.00013 37.0 21.7 95 377-471 88-192 (278)
238 PRK15331 chaperone protein Sic 93.6 2 4.3E-05 35.6 11.3 98 545-645 44-141 (165)
239 KOG0550 Molecular chaperone (D 93.5 7.4 0.00016 37.4 16.8 152 446-602 179-350 (486)
240 PF04053 Coatomer_WDAD: Coatom 93.5 2.2 4.7E-05 42.8 13.8 132 376-534 298-429 (443)
241 KOG2066 Vacuolar assembly/sort 93.4 12 0.00026 39.3 20.9 73 380-452 363-439 (846)
242 COG4105 ComL DNA uptake lipopr 93.4 4.3 9.4E-05 36.4 13.8 23 442-464 77-99 (254)
243 KOG1920 IkappaB kinase complex 93.3 16 0.00034 40.5 20.3 66 380-464 959-1027(1265)
244 PF10300 DUF3808: Protein of u 93.3 5.1 0.00011 40.8 16.4 158 438-599 190-373 (468)
245 PF10602 RPN7: 26S proteasome 93.2 1.6 3.4E-05 37.4 10.9 60 540-599 38-99 (177)
246 COG4785 NlpI Lipoprotein NlpI, 92.9 3.7 8E-05 35.5 12.1 162 2-170 95-266 (297)
247 PF07035 Mic1: Colon cancer-as 92.9 4.9 0.00011 33.7 15.0 52 281-332 93-145 (167)
248 KOG2114 Vacuolar assembly/sort 92.7 16 0.00034 38.8 27.7 117 80-203 339-458 (933)
249 PF13170 DUF4003: Protein of u 92.6 9.3 0.0002 36.0 16.3 51 452-502 78-134 (297)
250 smart00299 CLH Clathrin heavy 92.6 5 0.00011 32.9 15.8 87 439-534 10-96 (140)
251 KOG0543 FKBP-type peptidyl-pro 92.6 2.2 4.7E-05 40.8 11.5 62 438-500 259-320 (397)
252 PF07035 Mic1: Colon cancer-as 92.6 5.6 0.00012 33.4 14.6 136 328-501 15-150 (167)
253 PF00637 Clathrin: Region in C 92.5 0.22 4.9E-06 41.1 4.7 19 639-657 123-141 (143)
254 COG4649 Uncharacterized protei 92.3 1.3 2.8E-05 36.6 8.4 24 281-304 171-194 (221)
255 KOG0550 Molecular chaperone (D 92.2 12 0.00025 36.2 20.9 85 381-465 257-350 (486)
256 KOG4555 TPR repeat-containing 92.1 1 2.2E-05 35.2 7.2 65 72-136 74-145 (175)
257 KOG1920 IkappaB kinase complex 92.0 6.4 0.00014 43.3 15.3 23 376-398 793-817 (1265)
258 KOG4555 TPR repeat-containing 91.6 2.3 5E-05 33.3 8.6 87 547-634 52-140 (175)
259 PF04184 ST7: ST7 protein; In 91.6 5.3 0.00012 39.5 13.0 80 577-656 263-346 (539)
260 COG3118 Thioredoxin domain-con 91.5 11 0.00024 34.6 17.6 139 480-623 143-286 (304)
261 PF13428 TPR_14: Tetratricopep 91.3 0.48 1E-05 29.3 4.2 26 541-566 4-29 (44)
262 COG4649 Uncharacterized protei 91.1 8 0.00017 32.2 12.7 22 578-599 172-193 (221)
263 COG3629 DnrI DNA-binding trans 91.1 2 4.3E-05 39.4 9.3 76 507-582 153-236 (280)
264 KOG2610 Uncharacterized conser 91.0 5.6 0.00012 37.0 11.9 187 448-635 115-312 (491)
265 PF13428 TPR_14: Tetratricopep 90.8 0.71 1.5E-05 28.5 4.6 34 7-42 2-35 (44)
266 COG3629 DnrI DNA-binding trans 90.7 2.2 4.7E-05 39.2 9.2 80 538-618 153-236 (280)
267 COG1729 Uncharacterized protei 90.5 2.6 5.6E-05 38.1 9.4 93 509-602 144-244 (262)
268 PF13176 TPR_7: Tetratricopept 90.4 0.57 1.2E-05 27.4 3.7 27 8-34 1-27 (36)
269 PRK11619 lytic murein transgly 89.8 31 0.00067 36.9 35.4 133 17-155 44-177 (644)
270 PF13431 TPR_17: Tetratricopep 89.7 0.49 1.1E-05 27.2 2.9 32 62-95 2-33 (34)
271 TIGR02508 type_III_yscG type I 89.6 5.3 0.00012 29.6 8.5 87 54-145 20-106 (115)
272 PF13176 TPR_7: Tetratricopept 89.6 0.89 1.9E-05 26.5 4.0 23 541-563 2-24 (36)
273 PRK11906 transcriptional regul 89.4 8.8 0.00019 37.9 12.6 131 2-134 244-400 (458)
274 COG3898 Uncharacterized membra 89.3 21 0.00046 34.2 26.6 210 384-602 165-392 (531)
275 KOG2610 Uncharacterized conser 89.0 20 0.00044 33.5 14.6 147 416-565 114-274 (491)
276 PF04184 ST7: ST7 protein; In 88.9 27 0.00058 34.9 17.1 155 12-183 174-338 (539)
277 KOG1941 Acetylcholine receptor 88.7 5.5 0.00012 37.5 10.1 125 475-599 126-272 (518)
278 PF10345 Cohesin_load: Cohesin 88.0 41 0.00088 36.0 30.3 49 447-495 372-428 (608)
279 COG0457 NrfG FOG: TPR repeat [ 87.8 20 0.00044 32.2 20.2 51 548-599 177-228 (291)
280 PF13929 mRNA_stabil: mRNA sta 87.7 7 0.00015 35.9 10.0 66 570-635 199-264 (292)
281 PF10602 RPN7: 26S proteasome 87.4 7.6 0.00016 33.3 9.9 64 437-500 37-102 (177)
282 KOG1258 mRNA processing protei 87.3 37 0.0008 34.7 28.6 176 407-587 299-489 (577)
283 KOG2114 Vacuolar assembly/sort 87.3 45 0.00098 35.7 27.0 84 214-304 375-458 (933)
284 KOG4570 Uncharacterized conser 87.3 6 0.00013 36.4 9.3 96 506-602 63-164 (418)
285 KOG2062 26S proteasome regulat 87.3 42 0.00091 35.3 29.3 122 516-639 510-636 (929)
286 COG1747 Uncharacterized N-term 87.1 35 0.00075 34.2 18.4 159 469-635 64-231 (711)
287 PF04190 DUF410: Protein of un 87.1 25 0.00054 32.5 17.0 94 445-538 19-121 (260)
288 PRK09687 putative lyase; Provi 87.0 27 0.00058 32.8 23.9 61 274-336 203-263 (280)
289 PF00637 Clathrin: Region in C 86.9 0.73 1.6E-05 38.0 3.5 85 146-233 12-96 (143)
290 KOG1941 Acetylcholine receptor 86.8 4.8 0.0001 37.8 8.6 221 415-635 16-272 (518)
291 PRK09687 putative lyase; Provi 86.7 28 0.0006 32.6 24.1 203 433-652 65-278 (280)
292 PF13170 DUF4003: Protein of u 86.6 19 0.00041 34.0 12.8 126 55-183 78-224 (297)
293 TIGR02508 type_III_yscG type I 86.5 11 0.00025 28.0 9.1 81 378-475 26-106 (115)
294 PRK11906 transcriptional regul 86.4 34 0.00074 34.0 14.5 113 452-566 274-400 (458)
295 PF00515 TPR_1: Tetratricopept 86.2 1.8 3.9E-05 24.7 3.9 27 540-566 3-29 (34)
296 PF13512 TPR_18: Tetratricopep 85.9 6.6 0.00014 31.8 8.0 85 3-119 7-95 (142)
297 PF10345 Cohesin_load: Cohesin 85.8 53 0.0012 35.1 28.8 48 254-301 373-428 (608)
298 COG5107 RNA14 Pre-mRNA 3'-end 85.5 39 0.00085 33.2 35.5 62 139-201 40-101 (660)
299 KOG4570 Uncharacterized conser 85.2 15 0.00032 34.1 10.6 101 400-502 59-166 (418)
300 COG2976 Uncharacterized protei 85.1 14 0.0003 31.7 9.8 124 8-136 56-189 (207)
301 PF13431 TPR_17: Tetratricopep 85.1 1.3 2.9E-05 25.4 2.9 24 504-527 10-33 (34)
302 PF09613 HrpB1_HrpK: Bacterial 84.9 16 0.00035 30.3 9.9 48 87-134 22-72 (160)
303 COG0457 NrfG FOG: TPR repeat [ 84.8 29 0.00062 31.1 21.5 211 450-664 37-259 (291)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 84.7 5.2 0.00011 29.5 6.2 60 556-617 25-84 (103)
305 KOG2063 Vacuolar assembly/sort 84.5 23 0.00051 38.6 13.6 127 8-152 506-637 (877)
306 COG3118 Thioredoxin domain-con 84.5 34 0.00073 31.7 16.9 52 381-432 142-195 (304)
307 PF02284 COX5A: Cytochrome c o 84.3 5.9 0.00013 29.6 6.4 61 556-618 28-88 (108)
308 PF13512 TPR_18: Tetratricopep 84.2 11 0.00024 30.5 8.6 70 84-153 19-94 (142)
309 TIGR02561 HrpB1_HrpK type III 83.4 23 0.0005 28.9 11.5 65 384-448 21-88 (153)
310 KOG1464 COP9 signalosome, subu 83.0 36 0.00078 30.8 15.4 162 441-603 70-261 (440)
311 KOG1258 mRNA processing protei 82.6 62 0.0013 33.2 26.9 123 8-134 47-179 (577)
312 COG5159 RPN6 26S proteasome re 82.0 41 0.00089 30.8 12.2 134 442-575 9-166 (421)
313 PF07719 TPR_2: Tetratricopept 81.9 3.5 7.5E-05 23.3 3.9 25 542-566 5-29 (34)
314 PF13374 TPR_10: Tetratricopep 81.8 2.7 5.9E-05 25.2 3.7 28 7-34 3-30 (42)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 81.7 11 0.00024 27.9 6.9 50 121-170 22-71 (103)
316 COG4105 ComL DNA uptake lipopr 80.9 43 0.00094 30.3 18.9 178 444-636 42-231 (254)
317 PF00515 TPR_1: Tetratricopept 80.8 3 6.4E-05 23.7 3.3 29 7-35 2-30 (34)
318 PF04190 DUF410: Protein of un 80.7 48 0.001 30.7 14.5 158 87-271 2-170 (260)
319 KOG0276 Vesicle coat complex C 80.5 41 0.00089 34.4 12.5 149 417-598 598-746 (794)
320 PF13374 TPR_10: Tetratricopep 80.5 4.2 9E-05 24.4 4.2 25 540-564 4-28 (42)
321 COG4455 ImpE Protein of avirul 80.4 9.2 0.0002 33.3 7.1 76 540-618 3-81 (273)
322 TIGR02561 HrpB1_HrpK type III 79.6 33 0.00071 28.1 10.2 89 255-345 23-115 (153)
323 KOG2297 Predicted translation 79.0 55 0.0012 30.4 12.6 67 156-227 270-341 (412)
324 PF09477 Type_III_YscG: Bacter 78.9 22 0.00047 27.0 7.7 79 54-136 21-99 (116)
325 PHA02875 ankyrin repeat protei 78.7 46 0.001 33.5 13.3 77 117-201 10-90 (413)
326 PF02284 COX5A: Cytochrome c o 78.7 15 0.00031 27.6 6.8 48 124-171 28-75 (108)
327 PF07721 TPR_4: Tetratricopept 78.5 3.2 6.8E-05 22.0 2.7 21 79-99 5-25 (26)
328 KOG0276 Vesicle coat complex C 78.4 43 0.00094 34.3 12.0 76 377-463 618-693 (794)
329 PF07719 TPR_2: Tetratricopept 76.6 4.7 0.0001 22.7 3.3 29 7-35 2-30 (34)
330 TIGR03504 FimV_Cterm FimV C-te 76.2 6 0.00013 24.4 3.7 25 112-136 5-29 (44)
331 PF11207 DUF2989: Protein of u 76.0 20 0.00043 31.1 8.0 73 555-628 123-197 (203)
332 PF10579 Rapsyn_N: Rapsyn N-te 75.6 8.9 0.00019 27.1 4.8 46 550-595 18-65 (80)
333 PF09613 HrpB1_HrpK: Bacterial 75.5 46 0.001 27.7 12.7 50 483-534 22-71 (160)
334 PF13181 TPR_8: Tetratricopept 75.3 5 0.00011 22.7 3.2 26 541-566 4-29 (34)
335 PF13174 TPR_6: Tetratricopept 74.7 4 8.7E-05 22.8 2.7 27 9-35 3-29 (33)
336 PF13762 MNE1: Mitochondrial s 74.5 46 0.001 27.2 9.4 49 206-254 78-127 (145)
337 KOG1586 Protein required for f 74.0 65 0.0014 28.7 14.2 52 548-599 164-221 (288)
338 COG4455 ImpE Protein of avirul 73.4 64 0.0014 28.4 10.2 73 510-582 4-81 (273)
339 cd08819 CARD_MDA5_2 Caspase ac 73.4 18 0.0004 26.2 6.0 67 58-127 21-87 (88)
340 PF02259 FAT: FAT domain; Int 72.5 99 0.0021 30.1 17.7 65 537-601 145-212 (352)
341 TIGR03504 FimV_Cterm FimV C-te 71.4 5.9 0.00013 24.4 2.8 26 11-36 4-29 (44)
342 PF11207 DUF2989: Protein of u 71.3 50 0.0011 28.8 9.2 74 121-195 121-197 (203)
343 COG5159 RPN6 26S proteasome re 70.7 88 0.0019 28.8 15.7 33 213-245 9-41 (421)
344 KOG2066 Vacuolar assembly/sort 69.8 1.6E+02 0.0035 31.5 24.9 20 510-529 650-669 (846)
345 PF07163 Pex26: Pex26 protein; 68.0 61 0.0013 29.8 9.4 88 442-530 89-181 (309)
346 KOG1464 COP9 signalosome, subu 66.8 1E+02 0.0022 28.1 16.2 196 372-575 104-339 (440)
347 PF13181 TPR_8: Tetratricopept 66.2 14 0.0003 20.7 3.7 29 7-35 2-30 (34)
348 PF04034 DUF367: Domain of unk 66.2 28 0.0006 27.5 6.1 60 604-663 61-121 (127)
349 COG2976 Uncharacterized protei 65.6 91 0.002 27.0 14.0 89 378-466 94-189 (207)
350 PF10579 Rapsyn_N: Rapsyn N-te 65.1 13 0.00028 26.3 3.8 48 585-632 18-66 (80)
351 KOG1550 Extracellular protein 64.5 1.9E+02 0.0042 30.5 14.4 156 441-606 253-429 (552)
352 PF11846 DUF3366: Domain of un 64.1 21 0.00046 31.2 6.2 30 570-599 141-170 (193)
353 KOG4234 TPR repeat-containing 63.4 56 0.0012 28.3 7.8 89 444-535 103-196 (271)
354 cd00280 TRFH Telomeric Repeat 62.9 26 0.00056 29.8 5.8 67 554-624 85-158 (200)
355 KOG0403 Neoplastic transformat 62.1 1.7E+02 0.0037 29.0 19.6 71 378-448 514-586 (645)
356 PF14689 SPOB_a: Sensor_kinase 61.6 21 0.00046 24.1 4.3 46 554-601 6-51 (62)
357 KOG4077 Cytochrome c oxidase, 61.1 46 0.00099 26.2 6.3 58 557-616 68-125 (149)
358 PF11848 DUF3368: Domain of un 61.0 34 0.00074 21.6 4.9 33 117-149 13-45 (48)
359 COG3947 Response regulator con 60.6 1.5E+02 0.0031 27.7 12.5 43 487-532 149-191 (361)
360 PF11848 DUF3368: Domain of un 60.6 40 0.00086 21.3 5.2 34 447-480 13-46 (48)
361 PF07163 Pex26: Pex26 protein; 59.5 78 0.0017 29.1 8.5 87 113-199 90-181 (309)
362 KOG0890 Protein kinase of the 59.4 4.4E+02 0.0095 32.9 24.7 159 147-314 1389-1552(2382)
363 KOG4648 Uncharacterized conser 59.4 30 0.00064 32.6 6.1 78 514-599 104-184 (536)
364 PF10366 Vps39_1: Vacuolar sor 59.3 50 0.0011 25.5 6.6 28 107-134 40-67 (108)
365 KOG4648 Uncharacterized conser 59.2 33 0.0007 32.3 6.3 92 478-573 104-198 (536)
366 PF08311 Mad3_BUB1_I: Mad3/BUB 59.1 91 0.002 24.9 8.9 44 555-598 80-124 (126)
367 PF13762 MNE1: Mitochondrial s 58.6 1E+02 0.0022 25.3 10.8 76 511-586 43-128 (145)
368 PF13934 ELYS: Nuclear pore co 57.8 1.5E+02 0.0032 26.8 11.2 126 508-643 77-206 (226)
369 COG2909 MalT ATP-dependent tra 57.6 2.9E+02 0.0064 30.3 26.4 22 578-599 623-644 (894)
370 PF11768 DUF3312: Protein of u 57.3 1.6E+02 0.0036 30.2 11.2 128 510-661 411-543 (545)
371 PF09477 Type_III_YscG: Bacter 56.7 88 0.0019 23.9 8.2 79 156-237 21-99 (116)
372 cd08819 CARD_MDA5_2 Caspase ac 56.4 64 0.0014 23.6 6.1 37 188-225 48-84 (88)
373 COG3947 Response regulator con 56.1 69 0.0015 29.6 7.6 58 541-599 282-339 (361)
374 PF13934 ELYS: Nuclear pore co 55.4 1.6E+02 0.0035 26.6 12.1 70 512-585 113-184 (226)
375 smart00028 TPR Tetratricopepti 55.3 24 0.00053 18.6 3.6 23 543-565 6-28 (34)
376 KOG4234 TPR repeat-containing 54.1 1.5E+02 0.0032 25.9 8.8 85 515-601 103-196 (271)
377 KOG0403 Neoplastic transformat 53.6 2.4E+02 0.0052 28.1 19.6 70 511-584 513-585 (645)
378 PF10366 Vps39_1: Vacuolar sor 53.2 82 0.0018 24.3 6.9 26 541-566 42-67 (108)
379 PF06552 TOM20_plant: Plant sp 53.0 99 0.0021 26.4 7.6 38 554-599 96-133 (186)
380 KOG2908 26S proteasome regulat 52.8 1.3E+02 0.0028 28.7 8.9 76 514-589 82-173 (380)
381 PF11817 Foie-gras_1: Foie gra 52.4 36 0.00077 31.2 5.7 55 577-631 182-240 (247)
382 PHA03100 ankyrin repeat protei 51.6 2.9E+02 0.0062 28.5 13.0 237 126-373 48-311 (480)
383 KOG2908 26S proteasome regulat 51.3 1.9E+02 0.0041 27.6 9.7 87 542-628 79-176 (380)
384 PRK12798 chemotaxis protein; R 51.1 2.6E+02 0.0056 27.7 18.1 143 521-665 126-281 (421)
385 KOG3807 Predicted membrane pro 50.8 1.2E+02 0.0027 28.5 8.5 61 543-606 280-343 (556)
386 PRK10564 maltose regulon perip 50.7 32 0.0007 32.0 5.0 38 540-577 259-296 (303)
387 PRK10564 maltose regulon perip 49.5 31 0.00067 32.1 4.6 39 209-247 259-297 (303)
388 PF11846 DUF3366: Domain of un 49.3 68 0.0015 28.0 6.8 21 506-526 143-163 (193)
389 KOG0687 26S proteasome regulat 48.5 2.5E+02 0.0054 26.7 12.8 132 467-602 66-210 (393)
390 PHA02537 M terminase endonucle 48.4 2.1E+02 0.0045 25.8 9.5 110 9-135 86-207 (230)
391 KOG4077 Cytochrome c oxidase, 47.7 1E+02 0.0022 24.4 6.4 47 124-170 67-113 (149)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 47.7 1.4E+02 0.0031 23.8 8.1 44 489-532 81-124 (126)
393 COG0735 Fur Fe2+/Zn2+ uptake r 47.3 88 0.0019 25.8 6.6 64 127-191 7-70 (145)
394 PRK13342 recombination factor 46.7 3.2E+02 0.0069 27.5 17.4 116 122-252 153-275 (413)
395 KOG0991 Replication factor C, 46.5 2.2E+02 0.0048 25.6 11.9 138 283-472 136-274 (333)
396 COG4003 Uncharacterized protei 46.1 38 0.00083 23.9 3.5 26 11-36 36-61 (98)
397 KOG4642 Chaperone-dependent E3 46.0 2.3E+02 0.005 25.6 9.4 57 541-599 47-104 (284)
398 PHA02875 ankyrin repeat protei 45.9 3.3E+02 0.0071 27.4 17.5 81 215-303 7-91 (413)
399 PF04097 Nic96: Nup93/Nic96; 45.9 4.1E+02 0.0089 28.5 23.1 66 105-171 110-182 (613)
400 KOG0890 Protein kinase of the 45.7 7.2E+02 0.016 31.3 33.2 131 76-213 1421-1552(2382)
401 KOG2297 Predicted translation 45.3 2.7E+02 0.0058 26.2 13.5 20 538-557 321-340 (412)
402 PF06552 TOM20_plant: Plant sp 45.3 68 0.0015 27.4 5.6 74 554-634 51-136 (186)
403 PRK02287 hypothetical protein; 45.2 84 0.0018 26.5 6.1 53 609-661 107-160 (171)
404 PF11663 Toxin_YhaV: Toxin wit 45.0 28 0.0006 27.8 3.1 31 219-251 107-137 (140)
405 KOG1114 Tripeptidyl peptidase 42.9 5.2E+02 0.011 28.9 13.1 80 555-635 1213-1292(1304)
406 PF14853 Fis1_TPR_C: Fis1 C-te 42.4 94 0.002 20.2 4.8 35 442-478 7-41 (53)
407 COG1747 Uncharacterized N-term 42.3 4E+02 0.0086 27.3 20.3 163 400-567 61-234 (711)
408 KOG0991 Replication factor C, 41.9 2.6E+02 0.0057 25.2 11.4 47 527-574 228-274 (333)
409 KOG2659 LisH motif-containing 41.8 2.4E+02 0.0053 25.2 8.6 95 539-636 27-130 (228)
410 KOG4567 GTPase-activating prot 40.6 3.2E+02 0.007 25.8 10.1 73 558-636 263-345 (370)
411 COG2909 MalT ATP-dependent tra 40.5 5.5E+02 0.012 28.4 28.2 56 543-598 623-684 (894)
412 KOG4279 Serine/threonine prote 40.2 1.8E+02 0.0039 31.1 8.6 66 438-506 203-279 (1226)
413 KOG4567 GTPase-activating prot 40.1 3.3E+02 0.0071 25.7 9.7 77 456-538 263-349 (370)
414 PF12796 Ank_2: Ankyrin repeat 40.0 72 0.0016 23.2 4.8 13 188-200 6-18 (89)
415 KOG0508 Ankyrin repeat protein 39.8 4.1E+02 0.0089 26.8 14.8 110 214-330 88-202 (615)
416 PF14689 SPOB_a: Sensor_kinase 39.7 49 0.0011 22.3 3.4 26 541-566 26-51 (62)
417 PF05944 Phage_term_smal: Phag 39.0 2E+02 0.0043 23.3 7.1 31 8-38 50-80 (132)
418 PRK10941 hypothetical protein; 38.7 3.2E+02 0.0068 25.5 9.5 76 541-618 184-260 (269)
419 PF14853 Fis1_TPR_C: Fis1 C-te 38.5 1.1E+02 0.0024 19.9 4.8 29 544-574 7-35 (53)
420 PF12862 Apc5: Anaphase-promot 38.3 1.7E+02 0.0036 21.8 7.1 54 549-602 9-70 (94)
421 COG5108 RPO41 Mitochondrial DN 38.2 1.4E+02 0.0029 31.4 7.4 45 146-190 33-79 (1117)
422 PRK13342 recombination factor 37.2 4.5E+02 0.0097 26.5 17.0 122 468-609 173-305 (413)
423 COG5108 RPO41 Mitochondrial DN 37.0 4E+02 0.0086 28.2 10.3 73 282-354 33-115 (1117)
424 PF09454 Vps23_core: Vps23 cor 36.7 56 0.0012 22.3 3.3 50 103-153 5-54 (65)
425 PF12926 MOZART2: Mitotic-spin 36.6 1.7E+02 0.0037 21.4 6.2 43 559-601 29-71 (88)
426 PF04762 IKI3: IKI3 family; I 36.5 6.9E+02 0.015 28.6 13.3 111 507-635 812-927 (928)
427 PF02259 FAT: FAT domain; Int 36.2 4.1E+02 0.0089 25.7 21.2 61 506-566 145-212 (352)
428 KOG0686 COP9 signalosome, subu 35.2 4.6E+02 0.0099 26.0 11.8 57 376-432 153-214 (466)
429 cd08326 CARD_CASP9 Caspase act 35.1 1.1E+02 0.0024 22.3 4.8 38 87-124 42-79 (84)
430 KOG4642 Chaperone-dependent E3 35.0 2.9E+02 0.0062 25.1 7.9 113 548-665 20-141 (284)
431 PRK09462 fur ferric uptake reg 35.0 1.9E+02 0.0042 23.8 7.0 61 131-192 7-68 (148)
432 PF11663 Toxin_YhaV: Toxin wit 34.5 33 0.00072 27.4 2.2 26 16-41 105-130 (140)
433 PF11838 ERAP1_C: ERAP1-like C 34.2 4.3E+02 0.0092 25.3 18.4 80 157-236 146-230 (324)
434 KOG3036 Protein involved in ce 34.2 3.2E+02 0.0069 24.9 8.1 120 11-148 147-272 (293)
435 PF03745 DUF309: Domain of unk 34.0 1.3E+02 0.0028 20.3 4.7 34 15-48 8-41 (62)
436 PF09986 DUF2225: Uncharacteri 33.7 3.5E+02 0.0076 24.2 9.1 20 616-635 172-191 (214)
437 PF11838 ERAP1_C: ERAP1-like C 33.4 4.4E+02 0.0095 25.2 20.5 148 487-636 146-306 (324)
438 KOG2063 Vacuolar assembly/sort 33.3 7.4E+02 0.016 27.8 19.2 124 90-218 493-637 (877)
439 TIGR01503 MthylAspMut_E methyl 33.1 1.8E+02 0.0039 29.2 7.2 81 257-340 69-167 (480)
440 PF04910 Tcf25: Transcriptiona 33.1 4.8E+02 0.011 25.6 17.6 57 544-600 109-166 (360)
441 PF03745 DUF309: Domain of unk 32.9 1E+02 0.0022 20.8 4.0 16 118-133 11-26 (62)
442 PLN03192 Voltage-dependent pot 32.8 7E+02 0.015 28.1 12.9 14 383-396 662-675 (823)
443 PF02847 MA3: MA3 domain; Int 32.8 1.4E+02 0.0029 23.1 5.5 21 112-132 8-28 (113)
444 PF09670 Cas_Cas02710: CRISPR- 32.6 5.1E+02 0.011 25.7 11.4 56 114-170 139-198 (379)
445 KOG0686 COP9 signalosome, subu 32.4 5.1E+02 0.011 25.7 11.3 174 473-650 152-353 (466)
446 COG0735 Fur Fe2+/Zn2+ uptake r 32.4 1.7E+02 0.0037 24.1 6.1 45 105-149 19-63 (145)
447 PF14669 Asp_Glu_race_2: Putat 32.1 3.4E+02 0.0074 23.6 12.5 22 378-399 137-158 (233)
448 PRK11639 zinc uptake transcrip 31.6 1.5E+02 0.0034 25.1 6.0 62 132-194 17-78 (169)
449 smart00386 HAT HAT (Half-A-TPR 31.5 90 0.002 16.7 3.6 13 554-566 3-15 (33)
450 PHA02878 ankyrin repeat protei 31.5 6E+02 0.013 26.2 14.1 70 229-302 149-223 (477)
451 PF14669 Asp_Glu_race_2: Putat 31.2 3.5E+02 0.0077 23.5 12.2 104 101-231 102-205 (233)
452 PF09670 Cas_Cas02710: CRISPR- 30.5 5.5E+02 0.012 25.5 11.5 55 445-500 140-198 (379)
453 PF12796 Ank_2: Ankyrin repeat 29.9 1.3E+02 0.0027 21.8 4.7 14 86-99 5-18 (89)
454 PF02847 MA3: MA3 domain; Int 29.9 1.1E+02 0.0024 23.7 4.5 22 182-203 8-29 (113)
455 KOG2659 LisH motif-containing 29.0 4.3E+02 0.0093 23.8 9.2 21 545-565 71-91 (228)
456 KOG0376 Serine-threonine phosp 29.0 1.2E+02 0.0027 30.3 5.4 102 548-654 14-118 (476)
457 PRK09462 fur ferric uptake reg 28.3 3.2E+02 0.0069 22.6 7.2 60 233-293 8-68 (148)
458 PRK10941 hypothetical protein; 28.2 5E+02 0.011 24.2 10.0 76 439-516 184-260 (269)
459 PRK11619 lytic murein transgly 28.1 8E+02 0.017 26.6 38.4 192 372-573 311-511 (644)
460 PF12862 Apc5: Anaphase-promot 28.1 2.5E+02 0.0055 20.8 6.9 54 447-500 9-70 (94)
461 PF07575 Nucleopor_Nup85: Nup8 27.6 79 0.0017 33.4 4.3 62 105-168 404-465 (566)
462 KOG2034 Vacuolar sorting prote 27.4 8.9E+02 0.019 26.9 28.3 181 377-572 508-701 (911)
463 COG2042 Uncharacterized conser 27.3 2.2E+02 0.0048 23.8 5.6 54 604-657 110-164 (179)
464 PF10475 DUF2450: Protein of u 27.3 2.1E+02 0.0046 27.0 6.7 51 183-235 105-155 (291)
465 KOG4507 Uncharacterized conser 27.0 4.9E+02 0.011 27.2 9.0 111 126-236 195-312 (886)
466 TIGR03581 EF_0839 conserved hy 26.9 1.5E+02 0.0032 26.1 4.8 63 472-534 164-235 (236)
467 cd07153 Fur_like Ferric uptake 26.7 1.4E+02 0.003 23.2 4.7 30 113-142 7-36 (116)
468 PF09868 DUF2095: Uncharacteri 26.7 2.3E+02 0.0049 22.0 5.2 25 12-36 67-91 (128)
469 smart00777 Mad3_BUB1_I Mad3/BU 26.6 3.3E+02 0.0073 21.7 8.6 43 555-597 80-123 (125)
470 PF13929 mRNA_stabil: mRNA sta 26.6 5.5E+02 0.012 24.2 17.8 63 599-661 192-258 (292)
471 PF00244 14-3-3: 14-3-3 protei 26.5 5E+02 0.011 23.7 10.1 59 111-169 6-65 (236)
472 PF10475 DUF2450: Protein of u 26.5 2E+02 0.0043 27.2 6.4 51 82-134 105-155 (291)
473 KOG0292 Vesicle coat complex C 26.4 5.2E+02 0.011 28.6 9.4 160 313-570 625-785 (1202)
474 PRK11639 zinc uptake transcrip 26.3 2.3E+02 0.0049 24.1 6.1 33 259-291 42-74 (169)
475 COG2178 Predicted RNA-binding 26.3 3.2E+02 0.007 23.8 6.6 104 56-169 20-149 (204)
476 KOG1586 Protein required for f 26.2 5E+02 0.011 23.6 17.6 19 448-466 166-184 (288)
477 KOG4521 Nuclear pore complex, 26.2 6.9E+02 0.015 28.8 10.5 164 11-195 925-1121(1480)
478 PF12926 MOZART2: Mitotic-spin 26.2 2.7E+02 0.0058 20.4 7.4 42 492-534 29-70 (88)
479 PF11768 DUF3312: Protein of u 26.0 2.9E+02 0.0064 28.5 7.5 57 79-135 412-473 (545)
480 PF04910 Tcf25: Transcriptiona 25.8 6.5E+02 0.014 24.8 15.2 57 443-499 110-167 (360)
481 PF09454 Vps23_core: Vps23 cor 25.8 1.7E+02 0.0038 20.0 4.2 47 536-583 6-52 (65)
482 KOG3364 Membrane protein invol 25.2 3.8E+02 0.0082 21.8 7.0 45 554-599 51-97 (149)
483 KOG3364 Membrane protein invol 25.1 3.8E+02 0.0082 21.8 8.8 73 570-644 29-107 (149)
484 KOG2582 COP9 signalosome, subu 25.0 6.5E+02 0.014 24.5 10.5 113 540-653 104-227 (422)
485 TIGR02270 conserved hypothetic 24.5 7.4E+02 0.016 25.0 23.9 25 473-497 254-278 (410)
486 PRK14962 DNA polymerase III su 24.3 8E+02 0.017 25.3 13.5 127 464-613 191-323 (472)
487 KOG3807 Predicted membrane pro 24.1 5E+02 0.011 24.7 8.0 52 476-527 280-331 (556)
488 smart00777 Mad3_BUB1_I Mad3/BU 24.1 3.8E+02 0.0082 21.4 8.7 43 489-531 81-123 (125)
489 COG4259 Uncharacterized protei 23.9 3.2E+02 0.007 20.6 6.1 40 558-597 57-96 (121)
490 cd07153 Fur_like Ferric uptake 23.8 2.3E+02 0.005 22.0 5.4 45 442-486 6-50 (116)
491 PF02607 B12-binding_2: B12 bi 23.7 1.6E+02 0.0034 20.9 4.1 37 447-483 12-48 (79)
492 cd08332 CARD_CASP2 Caspase act 22.3 2.3E+02 0.0049 21.0 4.6 35 87-121 46-80 (90)
493 PRK13800 putative oxidoreducta 22.2 1.2E+03 0.026 26.6 25.2 91 405-499 789-880 (897)
494 smart00544 MA3 Domain in DAP-5 22.1 3.7E+02 0.0081 20.7 8.2 21 112-132 8-28 (113)
495 KOG1463 26S proteasome regulat 22.0 7.3E+02 0.016 24.0 19.3 22 378-399 133-154 (411)
496 COG5187 RPN7 26S proteasome re 21.9 6.1E+02 0.013 23.8 7.9 163 28-190 60-241 (412)
497 PRK13800 putative oxidoreducta 21.7 1.2E+03 0.027 26.6 26.9 32 301-332 628-659 (897)
498 KOG4507 Uncharacterized conser 21.4 3.4E+02 0.0074 28.2 6.8 85 482-567 618-705 (886)
499 PHA02878 ankyrin repeat protei 21.2 9.1E+02 0.02 24.8 14.1 42 263-304 148-192 (477)
500 PF01475 FUR: Ferric uptake re 21.1 2.2E+02 0.0048 22.3 4.8 45 441-485 12-56 (120)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-92 Score=762.41 Aligned_cols=630 Identities=28% Similarity=0.517 Sum_probs=593.6
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHh
Q 005969 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGT 79 (667)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (667)
+.|+..++|.+|.+|++.|++++|..+|+.|.+.|+.|+..+|..++. |... ..+.+.+++..+.+.+ ..++...++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHH
Confidence 467888999999999999999999999999999999999999999999 7776 8999999999999998 789999999
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHH
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEF 159 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 159 (667)
+|+.+|++.|+++.|.++|++|++||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcC
Q 005969 160 GEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF 239 (667)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 239 (667)
+.+++..+.+.|+.||..++|.|+.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|...|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHh
Q 005969 240 PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYA 319 (667)
Q Consensus 240 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 319 (667)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..||+.+||.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHh
Q 005969 320 SKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTA 398 (667)
Q Consensus 320 ~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 398 (667)
+.|+.+ |+++|.+|.+.|+.||..||+.++. +|++.|++++|.++++.
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-------------------------------a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLS-------------------------------ACACLGDLDVGVKLHEL 414 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-------------------------------HHhccchHHHHHHHHHH
Confidence 999999 9999999999999999999985555 44555555555555544
Q ss_pred c---CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 005969 399 L---NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFV 475 (667)
Q Consensus 399 ~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 475 (667)
+ +..++...++.++..|++.|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. +++||..||+
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 4 44445555555555555555555555599999999999999999999999999999999999986 5999999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChH
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQ 555 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 555 (667)
.++.+|++.|+++.+.+++..+.+.|..+ +..++++|+++|+++|++++|.++|+.+ +||..+||+||.+|++.|+.+
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999877 9999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.+|+.|+..+|++++++|++.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999768899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 636 PFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 636 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
+++||..+|++|+.+|+.+|+.+.++.++++
T Consensus 652 ~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 652 PITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999999999887754
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-81 Score=680.48 Aligned_cols=572 Identities=27% Similarity=0.470 Sum_probs=539.9
Q ss_pred CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHH
Q 005969 1 MPDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVG 78 (667)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (667)
||+||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++. |... +...+.+++..+.+.| +.||..++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 225 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVV 225 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchH
Confidence 6899999999999999999999999999999999999999999999999 7766 9999999999999999 99999999
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE 158 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 158 (667)
++|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 159 FGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 005969 239 FPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGY 318 (667)
Q Consensus 239 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 318 (667)
.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|+.+|+.+|.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh----HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHH
Q 005969 319 ASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDAL 393 (667)
Q Consensus 319 ~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 393 (667)
++.|+.+ |+.+|.+|.. +++||..||..++.+|+..+.+ +++..+.+.|+.++..++++++++|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 9999999 9999999986 6999999999777777776666 66666677777777777777777777777777776
Q ss_pred HHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 005969 394 AFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473 (667)
Q Consensus 394 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 473 (667)
+ +|+.+ .+|..+||++|.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 545 ~--------------------------------~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 545 N--------------------------------QFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred H--------------------------------HHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 6 88888 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHH-HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-CCChhhHHHHHHHHHhC
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIK-KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-DRNVITWTALISALGLN 551 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~ 551 (667)
|+.++.+|++.|++++|.++|+.|. +.|+.| +..+|+.++++|++.|++++|.+++++|. +||..+|++|+.+|...
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999 556555 99999999999999999999999999996 89999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcch
Q 005969 552 GFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDH 611 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (667)
|+.+.+....+++.+. .|+ ...|..|...|+..|++++|.++.+.| +..|+++++..
T Consensus 671 ~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M-~~~g~~k~~g~ 728 (857)
T PLN03077 671 RHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTM-RENGLTVDPGC 728 (857)
T ss_pred CChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHH-HHcCCCCCCCc
Confidence 9999999999998884 665 567788889999999999999999999 55599988754
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-68 Score=566.62 Aligned_cols=536 Identities=15% Similarity=0.180 Sum_probs=454.1
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALL 82 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 82 (667)
.++...|..++..|++.|++++|+++|+.|...|+ ++++..+++.++
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv---------------------------------v~~~~v~~~~li 413 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL---------------------------------LDMDKIYHAKFF 413 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC---------------------------------CCchHHHHHHHH
Confidence 45566677777777777777777777777776654 456667778899
Q ss_pred HHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHH
Q 005969 83 GLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQ 162 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 162 (667)
..|.+.|.+++|..+|+.|..|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.+
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC----CCCchhHHHHHHHHHccCChhHHHHHHHHhHh--C
Q 005969 163 IHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE----IRDVVSWNTIIGALAESENFGKALELYLRMSV--D 236 (667)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 236 (667)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998885 57888999999999999999999999999976 5
Q ss_pred CcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHH
Q 005969 237 IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN----KNIVSWN 312 (667)
Q Consensus 237 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 312 (667)
|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999988888888865 6778888
Q ss_pred HHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHH
Q 005969 313 ALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISD 391 (667)
Q Consensus 313 ~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (667)
.+|.+|++.|+.+ |.+++.+|.+.|+.||..+|+ +++.+|++.|++++
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn-------------------------------sLI~ay~k~G~~ee 702 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS-------------------------------SLMGACSNAKNWKK 702 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-------------------------------HHHHHHHhCCCHHH
Confidence 8888888888888 888888888888888877775 77778888888888
Q ss_pred HHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 005969 392 ALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 471 (667)
|.++|++| .+.-..||..+|++||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 703 A~~lf~eM----------------------------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 703 ALELYEDI----------------------------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHHH----------------------------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 88844431 11113699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhC
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLN 551 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 551 (667)
.||+.++.+|++.|+++.|.++++.|.+.|..| |..+|++++..|. +++++|.++.+.+...+. .......
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p-d~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------g~~~~~n 825 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKP-NLVMCRCITGLCL--RRFEKACALGEPVVSFDS------GRPQIEN 825 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------ccccccc
Confidence 999999999999999999999999999999877 9999999987654 245555555443331110 1111122
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHH
Q 005969 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI 631 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (667)
+..++|+.+|++|.+.|+.||..||+.++.++++.+....+..+++.|. ..+..|+..+|++|++++++. .++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 3456799999999999999999999999988889999999999999884 448889999999999998532 4689999
Q ss_pred HHhC---CCCCCHH
Q 005969 632 ITTM---PFPPNAL 642 (667)
Q Consensus 632 ~~~m---~~~p~~~ 642 (667)
+++| ++.|+..
T Consensus 903 ~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 903 LEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHcCCCCCcc
Confidence 9999 3666653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.4e-66 Score=544.91 Aligned_cols=472 Identities=23% Similarity=0.414 Sum_probs=440.2
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHH
Q 005969 104 KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSE-VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSL 182 (667)
Q Consensus 104 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (667)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHH
Q 005969 183 VNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGK 262 (667)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 262 (667)
+.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCC
Q 005969 263 SIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPN 341 (667)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~ 341 (667)
+++..+.+.|+.||..++++|+++|++.|++++|.++|++|.++|+.+||++|.+|++.|+.+ |+++|.+|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc---CCCCCcchhHHHHHHHhhc
Q 005969 342 EFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL---NIPRAVVPANIIAGIYNRT 418 (667)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~ 418 (667)
..||+ .++.+|++.|++++|.+++..+ +.+++..+++.+++.|++.
T Consensus 325 ~~t~~-------------------------------~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 325 QFTFS-------------------------------IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHH-------------------------------HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99997 6666677777777777777666 6667777777777777777
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 005969 419 GQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 77777777999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHH
Q 005969 499 KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVAL 576 (667)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~ 576 (667)
+.....|+..+|+.++++|++.|++++|.+++++|. +|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y 531 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNY 531 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcch
Confidence 753344499999999999999999999999999997 79999999999999999999999999999975 5664 6799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
..|+..|++.|++++|.++++.| ++.|++..+
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m-~~~g~~k~~ 563 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETL-KRKGLSMHP 563 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH-HHcCCccCC
Confidence 99999999999999999999999 555876543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-66 Score=547.06 Aligned_cols=580 Identities=22% Similarity=0.340 Sum_probs=460.4
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRG-FEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
++..+|+.+|.+|.+.|++.+|+++|+.|...+ +.||..+|+.++. |... +.+.+.+++..+.+.| +.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 355699999999999999999999999999864 7899999999999 7766 9999999999999999 9999999999
Q ss_pred HHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFG 160 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 160 (667)
|+.+|++.|++++|.++|++|++||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCC
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 240 (667)
.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhc
Q 005969 241 NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYAS 320 (667)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 320 (667)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|++.|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc
Q 005969 321 KSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL 399 (667)
Q Consensus 321 ~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 399 (667)
.|+.+ |+++|++|.+.|+.||..||+ .++.+|.+.|.+++|.++|+.|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------------------------------~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFL-------------------------------AVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHH
Confidence 99999 999999999999999999997 7778888889999999866655
Q ss_pred ----CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 005969 400 ----NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFV 475 (667)
Q Consensus 400 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 475 (667)
+.. |+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+
T Consensus 453 ~~~~g~~-------------------------------p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 453 SENHRIK-------------------------------PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred HHhcCCC-------------------------------CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 233 45555555555555555555555555443 3455555555
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC-----hhhHHHH------
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN-----VITWTAL------ 544 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l------ 544 (667)
.++.+|...|+++.|..+++++.+. .|.+..+|..|++.|++.|++++|.++++.|.+.. ..+|..+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 5555555555555555555554432 23234455555555555555555555555554211 1111100
Q ss_pred -HHHHHhC----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH---hHHhhCCCCCc-chhHHH
Q 005969 545 -ISALGLN----GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFER---MNRSYGVEPEM-DHYHCV 615 (667)
Q Consensus 545 -i~~~~~~----~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~-~~~~~l 615 (667)
+.+-..+ .-++...++..+|.+.|..||...... ...+-++-..+..+ +--.+|+--++ .+--.+
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~------~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i 650 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP------DVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQI 650 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc------cccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEE
Confidence 0000000 113456678889999999998543211 11111111111111 11112222111 111234
Q ss_pred HHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCh
Q 005969 616 VDLLVRYGHLKEAEKIITTMP----FPPNALIWRTFLEGCQRCRIA 657 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~~~~~ 657 (667)
++-+--+|+-..|.+++.+.. +..|..-|+++-.+-+.+||.
T Consensus 651 ~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~ 696 (697)
T PLN03081 651 TQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDY 696 (697)
T ss_pred ecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccccccc
Confidence 555567889999999998883 556777788887777777763
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-64 Score=534.35 Aligned_cols=494 Identities=17% Similarity=0.218 Sum_probs=445.3
Q ss_pred CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHH
Q 005969 137 VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGF-DYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIG 215 (667)
Q Consensus 137 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 215 (667)
..++...|..++..+++.|+++.|.++|+.|.+.|+ +++..+++.++..|.+.|..++|.++|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677888889999999999999999999999885 5677788889999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 005969 216 ALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEG 295 (667)
Q Consensus 216 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (667)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----CCcccHHHHHHHHhcCCChH-HHHHHHHHHH--cCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhc
Q 005969 296 AHLCFSEISN----KNIVSWNALILGYASKSSPT-SIFLLIELLQ--LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMG 368 (667)
Q Consensus 296 a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 368 (667)
|.++|+.|.+ ||..+|+.+|.+|++.|+.+ |.+++.+|.. .|+.||..+|+
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyn---------------------- 583 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG---------------------- 583 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHH----------------------
Confidence 9999999864 88899999999999999999 9999999976 57788888775
Q ss_pred CcchhhhHHHHHHHHHhhCCHHHHHHHHHhc---CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC----CCCcchHHH
Q 005969 369 YENYEYVLGSLMTSYAKSGLISDALAFVTAL---NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE----RPDIVSWNI 441 (667)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 441 (667)
+++.+|++.|++++|.++|+.| +.+|+..+|+.++.+|++.|++++|.++|++|. .||..+|++
T Consensus 584 ---------aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 584 ---------ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred ---------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7888888888888888888888 677888888888888888899999998999887 489999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..| +..+|+.|+.+|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999998766 9999999999999999
Q ss_pred ChHHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----c-------
Q 005969 522 SIGSSVKIFNEMT----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH----G------- 586 (667)
Q Consensus 522 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~------- 586 (667)
++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999997 599999999999999999999999999999999999999999999876542 1
Q ss_pred ------------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHH
Q 005969 587 ------------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP---FPPNALIWRTFLEGC 651 (667)
Q Consensus 587 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~l~~~~ 651 (667)
+..+.|..+|++|.+. |+.||..+|+.++.++++.+..+.+..+++.|. ..|+..+|++|+.+|
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 2246799999999655 999999999999999999999999999999995 667899999999998
Q ss_pred HhcCChhHHhhhhh
Q 005969 652 QRCRIAKYDTLNST 665 (667)
Q Consensus 652 ~~~~~~~~a~~~~~ 665 (667)
... .++|...++
T Consensus 893 ~~~--~~~A~~l~~ 904 (1060)
T PLN03218 893 GEY--DPRAFSLLE 904 (1060)
T ss_pred ccC--hHHHHHHHH
Confidence 432 245655443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-34 Score=322.96 Aligned_cols=647 Identities=12% Similarity=-0.004 Sum_probs=430.6
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHH--
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVG-- 78 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 78 (667)
+++...|..+...+...|++++|...|++..+... .+..++..+.. +..++++.|...++.+.+.. +.+....
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 266 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKA--PNSPLAHYL 266 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence 34445555556666666666666666666655321 12222222222 22335555555555554443 2222222
Q ss_pred --------------------------------hhHHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChH
Q 005969 79 --------------------------------TALLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVE 123 (667)
Q Consensus 79 --------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~ 123 (667)
..+...+...|++++|...|+...+ | +...+..+...+.+.|+++
T Consensus 267 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 2233334444555555555544332 1 2334444555555556666
Q ss_pred HHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 124 DCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 124 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
+|+..++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+...
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 6666665555432 2344455555555566666666666666655443 2234455555555666666666666655543
Q ss_pred C---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHH
Q 005969 204 I---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG 280 (667)
Q Consensus 204 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 280 (667)
. .+......++..+.+.|++++|..+++++... .+++..++..+...+...|+.++|.+.++++.+... .+...+
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 502 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAA 502 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHH
Confidence 2 12234445556666677777777777766553 344556677777777777777777777777766542 244556
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhh
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQ 356 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 356 (667)
..+...+...|++++|.+.|+++.. .+...+..+...+.+.|+.+ |...+.++...+. .+...+..+...+...+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCC
Confidence 6677777777888888777777654 34556667777777778877 8877777766432 23344444555555555
Q ss_pred hh----HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhc
Q 005969 357 LL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQ 430 (667)
Q Consensus 357 ~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (667)
.. ..+..+.+ ..+.++..+..+...+.+.|++++|...|+.+ ..|.+...+..+..++...|++++|...+++
T Consensus 582 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 33333332 23455677888888888888888888888887 4455666777888888888888888888887
Q ss_pred CCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005969 431 LER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 431 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
+.+ .+..++..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...++.+.+.+ | +.
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~-~~ 736 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--P-SS 736 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C-Cc
Confidence 663 345677888888888889999998888888765 4566777788888888899999999998888765 3 44
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
.++..+...+.+.|++++|.+.++.+.+ .+...+..+...|...|+.++|.+.|+++.+.. +++..+++.+...+.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6777788888999999999988888762 356688888888999999999999999998863 456778888999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHhh
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
..|+ ++|+.+++++... .+-++.++..+..++.+.|++++|.++++++- .+.+..++..+..++...|+.+.|..
T Consensus 816 ~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999 8899999988544 34455667788899999999999999999983 33478999999999999999999988
Q ss_pred hhhc
Q 005969 663 NSTK 666 (667)
Q Consensus 663 ~~~~ 666 (667)
..++
T Consensus 893 ~~~~ 896 (899)
T TIGR02917 893 ELDK 896 (899)
T ss_pred HHHH
Confidence 7764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-33 Score=315.34 Aligned_cols=647 Identities=11% Similarity=-0.015 Sum_probs=403.4
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
+.+...+..++..+...|++++|..+++.+.+.. +++...+..+.. ...++.+.|...+++.++.+ +.+...+..
T Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~ 232 (899)
T TIGR02917 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLA 232 (899)
T ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence 4566789999999999999999999999998863 233344444433 44559999999999999876 778888899
Q ss_pred HHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC-hhhHHHHHHHhcccCc
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALT-ESSFVGVIHGLSNEQD 156 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~ 156 (667)
++..+...|++++|...++.+.+ | +...+......+...|++++|...|+.+.+.+ |+ ...+..+...+...|+
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGN 310 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCC
Confidence 99999999999999999988753 2 22233333344456677777777777766543 22 2223333444555666
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHh
Q 005969 157 LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRM 233 (667)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 233 (667)
++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.++|+++
T Consensus 311 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 311 LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666655543 22344445555555555555555555554432 23344555555555555555555555555
Q ss_pred HhCCcCCChhhHHHHHH----------------------------------HhhccCChhHHHHHHHHHHHhcCCCCchH
Q 005969 234 SVDIVFPNQTTFVYVIN----------------------------------SCAGLQNSILGKSIHAKVIKNALECDVFV 279 (667)
Q Consensus 234 ~~~g~~p~~~t~~~ll~----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 279 (667)
.+.. +.+...+..+.. .+.+.|+.++|..+++.+.+.. +.+..+
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 467 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASL 467 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHH
Confidence 4331 112223333333 3444444555555444444332 224445
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhh
Q 005969 280 GSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAF 355 (667)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 355 (667)
+..+...+...|++++|.+.|+++.+ .+...+..+...+...|+.+ |...+.++.+.+. .+...+..+...+...
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHc
Confidence 55555556666666666666655433 22334444555555566666 6666665554321 1233333333333333
Q ss_pred hhh----HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHh
Q 005969 356 QLL----QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLS 429 (667)
Q Consensus 356 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (667)
+.. ..+..+...+ +.+...+..+...+...|++++|.++++.+ ..|.+...+..+..++...|++++|...|+
T Consensus 547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333 2222222221 223344556666777777777777777766 445556666777777777777777777777
Q ss_pred cCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc
Q 005969 430 QLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD 506 (667)
Q Consensus 430 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 506 (667)
.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|.++++.+.+.. |++
T Consensus 626 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 702 (899)
T TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKA 702 (899)
T ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCC
Confidence 6542 344556666777777777777777777776642 3345667777777777777777777777776664 335
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
...+..+...+...|++++|.+.|+.+. .|+..++..+..++...|+.++|.+.++++.+.. +.+...+..+...|.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6667777777777777777777777765 3555666677777777788888888877777752 345667777777777
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHhh
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPNALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
..|++++|.++|+++... .++++.++..+...+...|+ .+|.+.+++.- . +-+..++..+...+...|+++.|..
T Consensus 782 ~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 788888888888877544 35566777777888887777 77887777762 2 3345666777777888888888877
Q ss_pred hhhc
Q 005969 663 NSTK 666 (667)
Q Consensus 663 ~~~~ 666 (667)
.+++
T Consensus 859 ~~~~ 862 (899)
T TIGR02917 859 LLRK 862 (899)
T ss_pred HHHH
Confidence 6654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.6e-24 Score=235.69 Aligned_cols=595 Identities=11% Similarity=0.043 Sum_probs=347.8
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhH---------------hh-c---cCCccchhhHHHHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGG---------------LL-S---CDSLNPVEGAQLQA 63 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------ll-~---~~~~~~~~a~~~~~ 63 (667)
+.|+..+..++..+.+.|+.++|...+++..+. .|+...+.. +. . ...+++++|...++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 344555555566666666666666666666654 233322210 10 0 22235566666666
Q ss_pred HHHHhCCCCCChhHHhhHH-HHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCc-
Q 005969 64 SVLKNGLFCADAFVGTALL-GLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVA- 138 (667)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 138 (667)
.+++.+ +++......+. ......|+.++|++.|+++.. | +...+..+...+...|+.++|++.++++.+....
T Consensus 137 ~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 137 KLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 655443 33322111111 111223556666666655543 2 2334445555555556666666666555432100
Q ss_pred ---------------CChh---hHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhc
Q 005969 139 ---------------LTES---SFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFK 200 (667)
Q Consensus 139 ---------------~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 200 (667)
++.. .+...+..+-.....+.+...+.........|+.. .......+...|++++|+..|+
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 0000 01111111222222333333333333222222211 1123445556677777777666
Q ss_pred cCCC--C-CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCC-ChhhHH---------H---HHHHhhccCChhHHHHH
Q 005969 201 DVEI--R-DVVSWNTIIGALAESENFGKALELYLRMSVDIVFP-NQTTFV---------Y---VINSCAGLQNSILGKSI 264 (667)
Q Consensus 201 ~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~---------~---ll~~~~~~~~~~~a~~~ 264 (667)
+... | +...+..+...+.+.|++++|+..|++..+..... ....+. . .-..+.+.|++++|...
T Consensus 294 ~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6542 2 44556666666677777777777776665532111 111111 1 11234566677777777
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCC
Q 005969 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRP 340 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~ 340 (667)
++++.+... .+...+..+..++...|++++|.+.|++..+ | +...+..+...+.. ++.+ |...+..+.....
T Consensus 374 ~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~-- 449 (1157)
T PRK11447 374 YQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQR-- 449 (1157)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHH--
Confidence 776666532 2444555566666677777777777666554 2 22233334444432 3344 5555543222100
Q ss_pred CHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhc
Q 005969 341 NEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRT 418 (667)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~ 418 (667)
. ..... ... .....+..+...+...|++++|.+.|++. ..|.+...+..+..++.+.
T Consensus 450 ~--~~~~~-----------------~~~--l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 450 R--SIDDI-----------------ERS--LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred H--HHHHH-----------------HHH--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 0 00000 000 01122345677888899999999999988 5555667778889999999
Q ss_pred CChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCC
Q 005969 419 GQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY---------TFVSLLSACSKLCN 486 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~ 486 (667)
|++++|...++++.+ | +...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999998753 3 33444445555677899999999998865433222221 12344566788999
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFRE 563 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~ 563 (667)
.++|..+++. .|+++..+..+...+.+.|+.++|...|+.+. .| +...+..++..|...|+.++|++.++.
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998871 35577788889999999999999999999887 34 567888899999999999999999998
Q ss_pred HHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC----CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 564 MEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEP----EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 564 ~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
..+. .|+ ..++..+..++...|++++|.++++++.....-.| +...+..+...+...|+.++|.+.+++.
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8774 554 45667788888999999999999999855421112 1235666788889999999999998876
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2e-23 Score=232.85 Aligned_cols=607 Identities=9% Similarity=0.006 Sum_probs=357.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCc-hhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHH-----------
Q 005969 13 ISAYSRCGYVEDALRMFLYMINRGFEPTQ-FTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVG----------- 78 (667)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 78 (667)
+......++.+.|.+.++++... .|+. ..+..+.. ...++.++|.+.++++.+.. |.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 33444566666666666666653 3333 22322222 33446666666666666655 3332221
Q ss_pred -----hhHHHHhhccCChhHHHHhhccCCC--CCchhH--HHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHH
Q 005969 79 -----TALLGLYGRHGCLDEVVSVFEDMPR--KSLVTW--NSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIH 149 (667)
Q Consensus 79 -----~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 149 (667)
..+...+.+.|++++|...|+.... |+.... ..........|+.++|++.++++.+.. +-+......+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2223345566666666666666543 211111 011111123466666666666666543 223444555556
Q ss_pred HhcccCchHHHHHHHHHHHHhcCCCc--hHH-----------------HHHHHHHHHhcCChhHHHHhhccCCC--CCch
Q 005969 150 GLSNEQDLEFGEQIHGLVIKNGFDYE--LLV-----------------ANSLVNMYFQCAGIWSAEKMFKDVEI--RDVV 208 (667)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 208 (667)
.+...|+.++|...++.+.+...... ... +...+..+-.....+.|...+..... .|..
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 66666666666666666644221000 000 00011111111112223333322110 0111
Q ss_pred -hHHHHHHHHHccCChhHHHHHHHHhHhCCcCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCc-hHH-----
Q 005969 209 -SWNTIIGALAESENFGKALELYLRMSVDIVFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDV-FVG----- 280 (667)
Q Consensus 209 -~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----- 280 (667)
........+...|++++|+..|++.... .| +...+..+-..+.+.|+.++|...|++..+....... ..+
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 1112234455566666666666666553 23 4445555555566666666666666666655432211 111
Q ss_pred -------HHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHH
Q 005969 281 -------SALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVL 349 (667)
Q Consensus 281 -------~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l 349 (667)
......+.+.|++++|.+.|++... .+...+..+...+...|+.+ |.+.+++..+.. |+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~------- 418 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGN------- 418 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC-------
Confidence 1112345566666666666666544 22334445555566666666 666666655432 221
Q ss_pred HHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCC-----------CCcchhHHHHHHHhhc
Q 005969 350 RSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIP-----------RAVVPANIIAGIYNRT 418 (667)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~l~~~~~~~ 418 (667)
...+..+...+ ..++.++|..+++.+... .....+......+...
T Consensus 419 -----------------------~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 419 -----------------------TNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred -----------------------HHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 11122444455 346788898888766211 1122344566778889
Q ss_pred CChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 419 GQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
|++++|++.|++..+ | +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999988764 3 34556778888899999999999999988643 2234444444455677889999999888
Q ss_pred HHHHhCCCCCch---------hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 496 LIKKTEIISSDT---------FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 496 ~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
.+......+ +. ..+..+...+...|+.++|.++++. ...+...+..+...+.+.|+.++|++.|++..+
T Consensus 554 ~l~~~~~~~-~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 554 TLPRAQWNS-NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred hCCchhcCh-hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 764332111 11 1223456778889999999999983 223556677888999999999999999999998
Q ss_pred cCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CC----C-
Q 005969 567 LGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FP----P- 639 (667)
Q Consensus 567 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~----p- 639 (667)
. .| +...+..++..+...|++++|.+.++..... -+.+...+..+..++...|++++|.++++++. .. |
T Consensus 632 ~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 632 R--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 5 55 5678899999999999999999999987433 23345567778889999999999999999983 21 2
Q ss_pred --CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 640 --NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 640 --~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
+...+..+...+...|+.+.|...+++
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 235667777888999999999887654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=4.1e-20 Score=196.45 Aligned_cols=601 Identities=9% Similarity=-0.049 Sum_probs=298.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHH
Q 005969 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALL 82 (667)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 82 (667)
.+..++..|...|...|+.++|+..+++..+. .|+...|..++. + .+..+|..+++++.+.. |.+..++..+.
T Consensus 76 ~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i--~~~~kA~~~ye~l~~~~--P~n~~~~~~la 149 (987)
T PRK09782 76 DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI--PVEVKSVTTVEELLAQQ--KACDAVPTLRC 149 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh--ccChhHHHHHHHHHHhC--CCChhHHHHHH
Confidence 34555666666666666666666666666654 455555544444 4 45556666666666655 44444444444
Q ss_pred HH--------hhccCChhHHHHhhccCCC-CCchhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 83 GL--------YGRHGCLDEVVSVFEDMPR-KSLVTWNS-IVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 83 ~~--------~~~~g~~~~a~~~~~~~~~-~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
.. |.+.+...++++ .+.... |+...... +.+.|...|++++|++++.++.+.+. .+..-...+-.++.
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~ 227 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLL 227 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44 555544444444 221111 12222222 35666666666666666666666542 22333444444444
Q ss_pred c-cCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC-----CCchhHHH--------------
Q 005969 153 N-EQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-----RDVVSWNT-------------- 212 (667)
Q Consensus 153 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-------------- 212 (667)
. .++ +.+..++.. .+.-+..++..+...|.+.|+.++|.+.++++.. |+..+|--
T Consensus 228 q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 228 AGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 4 244 444444331 2234566666666666666666666666666541 11111111
Q ss_pred ----------------HHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH--hhccCChhHHHHHHHHHHHhcCC
Q 005969 213 ----------------IIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS--CAGLQNSILGKSIHAKVIKNALE 274 (667)
Q Consensus 213 ----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~ 274 (667)
.+..+.+.++++.+.++. ...|..... .++. ....+...++.+.+..|.+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~ 374 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPA 374 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCC
Confidence 122233333333332221 112222211 1111 11223333444444444333111
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHhccCC--CCc----ccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHH
Q 005969 275 CDVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNI----VSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSH 347 (667)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~ 347 (667)
+.....-+.-...+.|+.++|.++|+.... ++. ....-++..|.+.+... ..+...- |.+++..+-..
T Consensus 375 -~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~ 449 (987)
T PRK09782 375 -NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL----SKPLPLAEQRQ 449 (987)
T ss_pred -CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh----ccccccchhHH
Confidence 222222222334455666666666655443 111 11223344444443322 1111000 00111111111
Q ss_pred HHHHhhh-hhhhHHHHHHHHhcC-cc--hhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChh
Q 005969 348 VLRSSLA-FQLLQLHCLIIRMGY-EN--YEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYN 422 (667)
Q Consensus 348 ~l~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 422 (667)
....... .......... .+. ++ +...+..+...+.. ++.++|...+... ...|+......+...+...|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHhhhhhhhhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 1110000 0000000011 111 12 34455555555554 6777777755554 33333333333344445677777
Q ss_pred HHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 423 ETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 423 ~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
+|...|+++.. |+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|+.++|...++...+.
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 77777766542 333445555566667777777777777776643 222222323333344457777777777777765
Q ss_pred CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHH
Q 005969 501 EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVAL 576 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~ 576 (667)
. | +...+..+...+.+.|+.++|...+++.. .| +...++.+...+...|+.++|+..+++..+. .| +...+
T Consensus 606 ~--P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~ 680 (987)
T PRK09782 606 A--P-SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALI 680 (987)
T ss_pred C--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 4 3 46667777777777777777777777666 23 3446666666777777777777777777763 44 34566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNAL 642 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~ 642 (667)
..+..++...|++++|...+++.... .|+. .+.........+..+++.|.+-+++- .+.|+..
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 77777777777777777777766432 3433 55556666666666777777766655 3555544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=4.4e-20 Score=196.26 Aligned_cols=611 Identities=11% Similarity=-0.000 Sum_probs=386.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCch-hHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHH
Q 005969 18 RCGYVEDALRMFLYMINRGFEPTQF-TFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEV 94 (667)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..|++++|+..|++..+. .|+.. .+..+.. ...++.++|+..+++..+.. |.|...+..+ ..+ ++.++|
T Consensus 56 ~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-HHh---ccChhH
Confidence 349999999999999985 55554 3433333 44458999999999999876 4444444444 333 888899
Q ss_pred HHhhccCCC--C-CchhHHHHHHH--------HHhCCChHHHHHHHHHHHHCCCcCChhhHHHH-HHHhcccCchHHHHH
Q 005969 95 VSVFEDMPR--K-SLVTWNSIVSI--------FGKHGFVEDCMFLFCELVRSEVALTESSFVGV-IHGLSNEQDLEFGEQ 162 (667)
Q Consensus 95 ~~~~~~~~~--~-~~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~ 162 (667)
..+++++.. | +...+..+... |.+. ++|.+.++ .......|+....... .+.|...++++.|..
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999864 4 34455555544 5555 55555554 3333333445555555 888889999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHh-cCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcC-C
Q 005969 163 IHGLVIKNGFDYELLVANSLVNMYFQ-CAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVF-P 240 (667)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p 240 (667)
++..+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|.+++.++...-.. |
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9999999873 345556677778887 466 88888877655567888889999999999999999999998654332 5
Q ss_pred ChhhHHHHHHHhhccCChh-HHHHHHHHHHHhcCCCC-chHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 005969 241 NQTTFVYVINSCAGLQNSI-LGKSIHAKVIKNALECD-VFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGY 318 (667)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 318 (667)
...++..++.- .+... .+..-+.. ...++ ....-.++..+.+.++++.+.++.. ....+. . ..+...
T Consensus 282 ~~~~~~~~l~r---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~ 350 (987)
T PRK09782 282 QEKSWLYLLSK---YSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYA 350 (987)
T ss_pred ccHHHHHHHHh---ccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHh
Confidence 66555555433 33221 11111110 00111 1112234777888899987777743 332232 1 233322
Q ss_pred h--cCCChH-HHHHHHHHHHcC-CCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC------cchhhhHHHHHHHHHhhCC
Q 005969 319 A--SKSSPT-SIFLLIELLQLG-YRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY------ENYEYVLGSLMTSYAKSGL 388 (667)
Q Consensus 319 ~--~~~~~~-a~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 388 (667)
. ..+... +...+..|.+.. -.+..-.-.+.+ ....+..+....+....+ .++......++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ--LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2 223333 666666665541 122211111111 112222222222222222 2244455678888888887
Q ss_pred ---HHHHHHHHH------------hc---------------CCCC--CcchhHHHHHHHhhcCChhHHHHHHhcCCC--C
Q 005969 389 ---ISDALAFVT------------AL---------------NIPR--AVVPANIIAGIYNRTGQYNETVKLLSQLER--P 434 (667)
Q Consensus 389 ---~~~a~~~~~------------~~---------------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 434 (667)
..++..+.. .. ..|+ +...+..+..++.. ++.++|...+.+... |
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P 507 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP 507 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC
Confidence 445544411 11 1233 44555666666665 788888886666553 4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.+.|...++...+.. |+....+..+.
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La 583 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLH 583 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHH
Confidence 4333222334445788899999888887553 4555556666777788888888888888887764 33444444444
Q ss_pred HHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVRE 591 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~ 591 (667)
....+.|++++|...+++.. .|+...|..+...+.+.|+.++|+..+++.... .|+ ...++.+..++...|++++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 45556688999998888877 477778888888888899999999999888885 564 5567777778888899999
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHhhhh
Q 005969 592 GMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNA-LIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
|+..+++..+. .+-+...+..+..++...|++++|.+.+++. ...|+. .+.........+..+++.+-...
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99988888544 3445667888888888899999999888887 355653 55555556666666666665544
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.2e-17 Score=163.09 Aligned_cols=622 Identities=11% Similarity=0.053 Sum_probs=410.9
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCchhHhHhhccCCc----------------cchhhHHHHHHH
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGF----EPTQFTFGGLLSCDSL----------------NPVEGAQLQASV 65 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~----------------~~~~a~~~~~~~ 65 (667)
..+|..+...|.+.|+.++.+.+++.-..... .++...+..+-.++.. ....|..+|...
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 45788999999999999999999998772211 1111111111000000 122333333333
Q ss_pred HHhCCCCCChhHHhhHHHHhhccCC--hhHHHHhhccCCCCCchh-HHHHHHH--HHhCCChHHHHHHHHHHHHCC--Cc
Q 005969 66 LKNGLFCADAFVGTALLGLYGRHGC--LDEVVSVFEDMPRKSLVT-WNSIVSI--FGKHGFVEDCMFLFCELVRSE--VA 138 (667)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~-~~~li~~--~~~~~~~~~a~~~~~~m~~~~--~~ 138 (667)
-+-....+...++.. ..|...|. ++.|...|..+.+.+..- ...+..+ ....|++..|+.+|....... .+
T Consensus 121 ~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 222211111111111 22223333 478888888776533322 2223333 345689999999999976532 33
Q ss_pred CChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---hhHHHHhhccCC---CCCchhHHH
Q 005969 139 LTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG---IWSAEKMFKDVE---IRDVVSWNT 212 (667)
Q Consensus 139 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~ 212 (667)
||+. ..+-.++.+.|+.+.|...|....+.+. .++.++-.|...-....+ +..+...+...- ..|++..+.
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNH 275 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 4432 2333556688999999999999887653 233333333322223333 333444443332 357888899
Q ss_pred HHHHHHccCChhHHHHHHHHhHhCCcC--CChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 005969 213 IIGALAESENFGKALELYLRMSVDIVF--PNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKC 290 (667)
Q Consensus 213 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (667)
|...|.-.|++..++.+...+...... .-...|-.+-+++-..|+++.|...|-+..+.........+.-|...|.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 999999999999999999888765311 123446677888888999999999998887765443344556788999999
Q ss_pred CChHHHHHHHhccCC--CC-cccHHHHHHHHhcCC----ChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhh---h-
Q 005969 291 DNLEGAHLCFSEISN--KN-IVSWNALILGYASKS----SPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQL---L- 358 (667)
Q Consensus 291 g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~----~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~---~- 358 (667)
|+++.+...|+.+.. || ..+...+-..|...+ ..+ |..++.+..+.- .-|...|..+-..+..... +
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999876 33 233333444444443 223 444444433322 2233334333333222211 1
Q ss_pred ---HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CC-----C------CCcchhHHHHHHHhhcCChhH
Q 005969 359 ---QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NI-----P------RAVVPANIIAGIYNRTGQYNE 423 (667)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-----~------~~~~~~~~l~~~~~~~~~~~~ 423 (667)
.....+...+..+.+.+.|.+...+...|++.+|...|... +. . +....--.+..++-..++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 44456667777799999999999999999999999999887 11 1 122233456677778889999
Q ss_pred HHHHHhcCCCCCcch---HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 424 TVKLLSQLERPDIVS---WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 424 a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
|.+++..+.+..+.- |--+.......++..+|..++++..... .-++..+..+-..+.+...+..|..-|..+.+.
T Consensus 515 A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 515 AEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 999999988533322 2222222223578889999999887643 445555555666788888888888877777666
Q ss_pred CCCCCchhHHhHHHHHHHh------------cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 501 EIISSDTFVCNMLIDMYGK------------CGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
-...+|+.+.-+|.+.|.+ .+..++|+++|..+.+ .|...-|.+.-.++..|++.+|..+|.+..
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 4444577777777776653 2456789999987774 366777888889999999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 566 FLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 566 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+.. .-...+|-.+..+|...|++..|.++|+...+++...-+..+...|.+++.++|.+.+|.+.+...
T Consensus 674 Ea~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 674 EAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 974 345668888999999999999999999999899888888899999999999999999999987766
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=4.1e-17 Score=154.03 Aligned_cols=436 Identities=11% Similarity=0.094 Sum_probs=294.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 005969 109 WNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQ 188 (667)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (667)
-..|..-.-+.|++.+|++.-...-+.+ +.+......+-..+.+..+.+...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555567778888777665544332 1122222222333444444444333322222222 2345667777777777
Q ss_pred cCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH-hhccCChhHHHHH
Q 005969 189 CAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS-CAGLQNSILGKSI 264 (667)
Q Consensus 189 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~ 264 (667)
.|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. +...|++.+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 7777777777776653 2455677777777777777777777766654 35665555444444 2335666666666
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhh
Q 005969 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFT 344 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 344 (667)
+.+..+.... -...|..|...+-.+|++..|++.|++...-|+.-.. .
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d-------------------------------A 254 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD-------------------------------A 254 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH-------------------------------H
Confidence 6665554321 2334555555566666666666666555442221111 1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChh
Q 005969 345 FSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYN 422 (667)
Q Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 422 (667)
|-.|...|...+.+++|...|.+. ..|.....+..+.-+|-.+|..+
T Consensus 255 -------------------------------YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 255 -------------------------------YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred -------------------------------HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 114556666777777777777766 55666777777777888888888
Q ss_pred HHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHH
Q 005969 423 ETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 423 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
-|+..+++..+ |+ ...|+.|..++-..|++.+|.+.|++... +.|+ ..+.+.|...+...|..+.|..++....
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 88888887764 33 35789999999999999999999998887 3454 4578888999999999999999999887
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-Hh
Q 005969 499 KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RV 574 (667)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~ 574 (667)
+-. |.-...++.|...|-..|+.++|...+++.. +|+ ...|+.+...|-..|+.+.|+..+.+.+. +.|. ..
T Consensus 382 ~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~Ae 457 (966)
T KOG4626|consen 382 EVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAE 457 (966)
T ss_pred hhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHH
Confidence 764 4356788899999999999999999999887 454 35888899999999999999999999888 5676 55
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHh
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLV 620 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 620 (667)
.++.|...|-.+|++.+|+.-++... .++||. ..|..++.++.
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aL---klkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTAL---KLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHH---ccCCCCchhhhHHHHHHH
Confidence 88889999999999999999998774 356664 56677766654
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=2.7e-16 Score=141.93 Aligned_cols=335 Identities=13% Similarity=0.111 Sum_probs=226.8
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC--chHHH-HHHHHHHHHhcCCCchHHHHHH
Q 005969 106 LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ--DLEFG-EQIHGLVIKNGFDYELLVANSL 182 (667)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~l 182 (667)
+.+-|.|+. ....|.+.++.-+|+.|...|+..++..-..|++.-+-.+ ++--+ ++.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 345566655 4567899999999999999999988887777665544332 22222 2333344444422 22222
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHH
Q 005969 183 VNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGK 262 (667)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 262 (667)
+.|++.+ ++-+...++..+|.++|.++|+--..+.|.++|++-.....+.+..+||.+|.+-+-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3344433 444444467789999999999999999999999999999899999999999988543333 7
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCH
Q 005969 263 SIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNE 342 (667)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~ 342 (667)
.++.+|....+.||..++|+++.+..+.|+++.|.+- +++++.+|++-|+.|..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a--------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA--------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH--------------------------HHHHHHHHHHhCCCcch
Confidence 8999999999999999999999999999999887653 45677788888888888
Q ss_pred hhHHHHHHHhhhhhhh---------HHHHHHHHhcCc----chhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhH
Q 005969 343 FTFSHVLRSSLAFQLL---------QLHCLIIRMGYE----NYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPAN 409 (667)
Q Consensus 343 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 409 (667)
.+|..+++.+.+.++. ++...+.-..++ .+...|...|..|.+..+.+-|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t-------- 384 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT-------- 384 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------
Confidence 8887777766655544 111222112222 2445566777777777777777764432200
Q ss_pred HHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 410 IIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
..+++..-.. .....-|..+....|.....+.-..+|+.|+-.-+-|+..+...++++....+.++-
T Consensus 385 --------g~N~~~ig~~-----~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ 451 (625)
T KOG4422|consen 385 --------GDNWKFIGPD-----QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEV 451 (625)
T ss_pred --------CCchhhcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchh
Confidence 0000000000 011223455666677777777888888888777677888888888888888888888
Q ss_pred HHHHHHHHHHhCCCC
Q 005969 490 GSSLHGLIKKTEIIS 504 (667)
Q Consensus 490 a~~~~~~~~~~~~~~ 504 (667)
..++|..+...|...
T Consensus 452 ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 452 IPRIWKDSKEYGHTF 466 (625)
T ss_pred HHHHHHHHHHhhhhh
Confidence 888888877776433
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.6e-18 Score=171.32 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=229.1
Q ss_pred cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC-CC------chhHHHHHHHHHhCCCh
Q 005969 50 CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR-KS------LVTWNSIVSIFGKHGFV 122 (667)
Q Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~~~~ 122 (667)
...++++.|...++++.+.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 33346666777777776655 55666788888889999999999999888764 22 24577888889999999
Q ss_pred HHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHhcCChhHHHHh
Q 005969 123 EDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYE----LLVANSLVNMYFQCAGIWSAEKM 198 (667)
Q Consensus 123 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 198 (667)
++|.++|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998753 35677888899999999999999999999988664332 22456677788899999999999
Q ss_pred hccCCC--C-CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC
Q 005969 199 FKDVEI--R-DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC 275 (667)
Q Consensus 199 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 275 (667)
|+++.+ | +...+..+...+.+.|++++|.++|+++...+......++..+..++...|+.++|...++.+.+.. |
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 988753 2 3557777888999999999999999999876433334667888889999999999999999988874 5
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhc---CCChH-HHHHHHHHHHcCCCCCHh
Q 005969 276 DVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYAS---KSSPT-SIFLLIELLQLGYRPNEF 343 (667)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~-a~~~~~~m~~~~~~~~~~ 343 (667)
+...+..+...+.+.|++++|.++++++.+ |+...++.++..+.. .|+.+ ++.++++|.+.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 556668899999999999999999988765 777888888877664 45777 999999999988888776
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=2.6e-16 Score=142.08 Aligned_cols=309 Identities=15% Similarity=0.119 Sum_probs=205.4
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--cCCc--c-chhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--CDSL--N-PVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~--~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
+.+=|.|+. ...+|.++++.-+|+.|.+.|+..+...-..++. |.-. + +-.-.+.|-.+...| .-+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--
Confidence 334455444 4567999999999999999998888877766666 3332 3 322333444444444 2222322
Q ss_pred HHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFG 160 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 160 (667)
+.|.+.+ ++-+...++..+|..||.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-.. .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 2344433 44344445667899999999999999999999999998888999999999987765332 2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCC
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFP 240 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 240 (667)
.+++.+|......||..++|+++....+.|+++.|.+ .|++++.+|++-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCc
Confidence 7889999999999888888888888888887776533 3566677777777777
Q ss_pred ChhhHHHHHHHhhccCChhH-HHHHHHHHHHh----cCCC----CchHHHHHHHHHHhcCChHHHHHHHhccCC------
Q 005969 241 NQTTFVYVINSCAGLQNSIL-GKSIHAKVIKN----ALEC----DVFVGSALVDFYAKCDNLEGAHLCFSEISN------ 305 (667)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------ 305 (667)
...+|..+|..+++.++..+ +..++.++... .++| |...|..-+..|.+..+.+-|.++-.-...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 77777777777776666543 33333333321 1222 444556666666677777666665544332
Q ss_pred --CC---cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 306 --KN---IVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 306 --~~---~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
++ ...|..+....++....+ -+.++..|.-.-+-|...+...++++....+.++
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e 450 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLE 450 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcch
Confidence 11 123455556666666667 7777777777777777777777777766666663
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-17 Score=156.69 Aligned_cols=432 Identities=15% Similarity=0.180 Sum_probs=304.9
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccC
Q 005969 145 VGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESE 221 (667)
Q Consensus 145 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 221 (667)
..|.....+.|++++|++--..+-..+ +.+....-.+-.++....+.++....-.... ..-..+|+.+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 334445556677777776655544433 2222223333344444444444322211111 123456777777777777
Q ss_pred ChhHHHHHHHHhHhCCcCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchH-HHHHHHHHHhcCChHHHHHH
Q 005969 222 NFGKALELYLRMSVDIVFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFV-GSALVDFYAKCDNLEGAHLC 299 (667)
Q Consensus 222 ~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~ 299 (667)
++++|+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+..+.. |+..- ..-+...+...|++.+|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 777777777777764 33 34456666666677777777777776666543 32222 22233333445666666655
Q ss_pred HhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHH
Q 005969 300 FSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSL 379 (667)
Q Consensus 300 ~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (667)
+.+..+.+ | +| ...|+.|
T Consensus 207 YlkAi~~q--------------------------------p---~f---------------------------AiawsnL 224 (966)
T KOG4626|consen 207 YLKAIETQ--------------------------------P---CF---------------------------AIAWSNL 224 (966)
T ss_pred HHHHHhhC--------------------------------C---ce---------------------------eeeehhc
Confidence 54433211 1 00 0112245
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CC-CCCcchhHHHHHHHhhcCChhHHHHHHhcCC--CC-CcchHHHHHHHHHHcCChhH
Q 005969 380 MTSYAKSGLISDALAFVTAL-NI-PRAVVPANIIAGIYNRTGQYNETVKLLSQLE--RP-DIVSWNIVIAACAHNGDYKE 454 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~ 454 (667)
...+...|+...|++.|++. .. |.-...|-.+..+|...+.++.|...+.+.. +| ....+..+...|-..|.++-
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 55566778888888888777 43 4445677888888999999999998888765 34 34667778888889999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhc
Q 005969 455 VLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 533 (667)
|+..|++..+ +.|+ ...|+.|..++-..|++.+|.+.+.+..... |.-....+.|...|...|.+++|.++|...
T Consensus 305 AI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 305 AIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999998 5676 4689999999999999999999999999886 446788999999999999999999999988
Q ss_pred CC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 534 TD--RN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 534 ~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
.+ |. ...++.|...|-++|++++|+..|++..+ ++|+ ...|+.+...|-..|+.+.|.+.+.+.+ .+.|+.
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~ 455 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTF 455 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHH
Confidence 75 33 34789999999999999999999999998 7898 4599999999999999999999999874 345654
Q ss_pred -chhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005969 610 -DHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWRTFLEGCQ 652 (667)
Q Consensus 610 -~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~ 652 (667)
+.++.|..+|..+|+..+|.+-+++. +++|| +..|..++.+..
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 67889999999999999999999887 57777 456666665543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2.2e-17 Score=164.73 Aligned_cols=228 Identities=16% Similarity=0.110 Sum_probs=116.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCc------chHHHHHHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDI------VSWNIVIAACA 447 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~------~~~~~li~~~~ 447 (667)
.+...|.+.|++++|...|+.+ ..+.+...+..++.++.+.|++++|.+.++.+.+ |+. ..+..+...+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 4555556666666666655544 1222233334444444444444444444444432 110 12333444555
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
..|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+... ...+++.++.+|...|++++|.
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666666665532 2223345555555666666666666666655543111 1334555556666666666666
Q ss_pred HHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc---cCCHHHHHHHHHHhHHh
Q 005969 528 KIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH---GGLVREGMELFERMNRS 602 (667)
Q Consensus 528 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 602 (667)
+.++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++++.++
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6666554 344444555556666666666666666665553 4555555555555443 33556666666666433
Q ss_pred hCCCCCcc
Q 005969 603 YGVEPEMD 610 (667)
Q Consensus 603 ~~~~~~~~ 610 (667)
++.|++.
T Consensus 348 -~~~~~p~ 354 (389)
T PRK11788 348 -QLKRKPR 354 (389)
T ss_pred -HHhCCCC
Confidence 4455544
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.78 E-value=2.6e-15 Score=147.80 Aligned_cols=253 Identities=10% Similarity=0.017 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHCCCCCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccC
Q 005969 24 DALRMFLYMINRGFEPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDM 101 (667)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 101 (667)
....+|-.+...|+.|+..||.+++. |..++.+-|- +|.-|.-.. .+.+...++.++.+....|+.+.+.
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC------
Confidence 34567888899999999999999998 8788888888 888888777 8888899999999998888887765
Q ss_pred CCCCchhHHHHHHHHHhCCChHHHHHHHHH-HH-------HCCCcCChhhHHHHHHHh--------------cccCchHH
Q 005969 102 PRKSLVTWNSIVSIFGKHGFVEDCMFLFCE-LV-------RSEVALTESSFVGVIHGL--------------SNEQDLEF 159 (667)
Q Consensus 102 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~~~~~~~~~~~~li~~~--------------~~~~~~~~ 159 (667)
+|...+|..|..+|.+.|+... ++..++ |. ..|+..-..-|-..++++ ...|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888899999999999999875 222222 22 233322222222222222 22233333
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCChhHHHHhhccCC-CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCC
Q 005969 160 GEQIHGLVIKNGFDYELLVANSLVNMYFQ-CAGIWSAEKMFKDVE-IRDVVSWNTIIGALAESENFGKALELYLRMSVDI 237 (667)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 237 (667)
+.+++..+......-...+ .++-... ...+++-..+.+... .++..+|..++..-.-+|+.+.|..++.+|++.|
T Consensus 158 llkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 3333322211110000000 1111111 122344444434333 3889999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 005969 238 VFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDN 292 (667)
Q Consensus 238 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (667)
++.+.+-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+.+.|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999988888876 78888899999999999999999999888777777554
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=3.7e-15 Score=156.43 Aligned_cols=414 Identities=12% Similarity=-0.009 Sum_probs=228.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 005969 108 TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYF 187 (667)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (667)
.+......+.+.|++++|++.|++.++ ..|+...|..+..++...|++++|...++..++.+ +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344566778888999999999988876 44777778888888888888888888888877654 224556666666666
Q ss_pred hcCChhHHHHhhccCCCCC---chhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHH
Q 005969 188 QCAGIWSAEKMFKDVEIRD---VVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSI 264 (667)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 264 (667)
..|++++|...|......+ ......++..+.. ..+.........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~----------------------------- 252 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILE----------------------------- 252 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHh-----------------------------
Confidence 6666666665554332111 0111111111110 011111111111
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHH---HhcCCChH-HHHHHHHHHHcC
Q 005969 265 HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNI---VSWNALILG---YASKSSPT-SIFLLIELLQLG 337 (667)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~-a~~~~~~m~~~~ 337 (667)
.. +++...+..+. .+...........-+....+.+. ..+..+... ....+.++ |...+.+....+
T Consensus 253 ------~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 253 ------TK-PENLPSVTFVG-NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ------cC-CCCCCCHHHHH-HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 10 00111111111 11111111111111111111000 001111000 11234555 666666666543
Q ss_pred -CCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHH
Q 005969 338 -YRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGI 414 (667)
Q Consensus 338 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~ 414 (667)
..|+.. ..+..+...+...|++++|+..++.. ..|.....+..+..+
T Consensus 325 ~~~~~~a------------------------------~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 325 KLGEKEA------------------------------IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred CCChhhH------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 122211 12235666777888999998888876 334445566667777
Q ss_pred HhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHH
Q 005969 415 YNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGS 491 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 491 (667)
+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|+.+.|.
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776542 334566666777777777777777777776642 223455666666677777777777
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CCh-h-------hHHHHHHHHHhCCChHHHHHHH
Q 005969 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNV-I-------TWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~-------~~~~li~~~~~~~~~~~A~~~~ 561 (667)
..++...+.. |.++..++.+...+...|++++|.+.|+...+ |+. . .++.....+...|++++|.+++
T Consensus 454 ~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7777776653 43566777777777777777777777776552 211 1 1111122233356777777777
Q ss_pred HHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 562 REMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 562 ~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
++.... .|+ ...+..+...+...|++++|.++|++..
T Consensus 532 ~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 532 EKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 776664 343 3456667777777777777777777663
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8e-15 Score=153.97 Aligned_cols=243 Identities=17% Similarity=0.052 Sum_probs=194.3
Q ss_pred hhCCHHHHHHHHHhcC-----CCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHH
Q 005969 385 KSGLISDALAFVTALN-----IPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 385 ~~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~ 456 (667)
..+++++|.+.|+... .+.....+..+...+...|++++|...+++..+ |+ ...|..+...+...|++++|.
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3578899999998872 233455677788888999999999999998764 33 346777888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-
Q 005969 457 ELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD- 535 (667)
Q Consensus 457 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 535 (667)
..|++..+.. +.+...+..+...+...|+++.|...+++..+.. |.+...+..+...+.+.|++++|...|++..+
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998753 3456788889999999999999999999998875 54677888899999999999999999998763
Q ss_pred -C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--Hh------HHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 536 -R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD--RV------ALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 536 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
| +...++.+...+...|++++|++.|++.... .|+ .. .++.....+...|++++|.+++++....
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--- 537 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--- 537 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 4 5678888999999999999999999999884 332 11 1122222334479999999999987443
Q ss_pred CCCc-chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 606 EPEM-DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 606 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|+. ..+..+..++.+.|++++|.+.|++.
T Consensus 538 ~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3443 46888999999999999999999887
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.1e-14 Score=140.14 Aligned_cols=223 Identities=12% Similarity=0.108 Sum_probs=163.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-CCCCC-cchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCCh
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-NIPRA-VVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDY 452 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 452 (667)
.+...+-..++.+.|.+.|..+ ...|+ ...|.-++-.....+...+|...+..... .++..+..+...+.+...+
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 3445566677888888988887 33333 33444444333344677888888887663 5566666667688888888
Q ss_pred hHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 453 KEVLELFKYMRAAR-IYPDNYTFVSLLSACSK------------LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 453 ~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..|.+-|....+.- ..+|..+...|.+.|.+ .+..++|+++|.++.+.. |.+...-|-+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhh
Confidence 88888777665432 23666666666665533 234577888888888775 5578888888888999
Q ss_pred cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhccCCHHHHHHH
Q 005969 520 CGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGF-KPDRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 520 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
.|++.+|..+|..+.+ .+..+|-.+.++|...|++..|+++|+...+.-. ..+....+.|.+++.+.|++.+|.+.
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999998885 3557888999999999999999999998776533 33566888999999999999999998
Q ss_pred HHHhHHh
Q 005969 596 FERMNRS 602 (667)
Q Consensus 596 ~~~~~~~ 602 (667)
+......
T Consensus 739 ll~a~~~ 745 (1018)
T KOG2002|consen 739 LLKARHL 745 (1018)
T ss_pred HHHHHHh
Confidence 8877443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=4.8e-14 Score=150.76 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhc
Q 005969 178 VANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAG 254 (667)
Q Consensus 178 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (667)
.+..+...+...|++++|.+.|++.. ..+...+..+...+...|++++|+..+++.... .|+...+..+...+..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444444444444444444444422 122334445555556666666666666666544 2322224444445556
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN 305 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (667)
.|+.++|...++.+.+..+. +...+..+..++...|..+.|.+.++....
T Consensus 129 ~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 66666666666666665433 344444556666667777777777766554
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=2.6e-14 Score=149.33 Aligned_cols=322 Identities=11% Similarity=-0.028 Sum_probs=202.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYA 288 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (667)
....++..+.+.|++++|+.+++........+... +..+..+....|+.+.|...++.+.+..+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34456677788888888888888887764333333 333334455678888888888888776433 4556777777888
Q ss_pred hcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHH
Q 005969 289 KCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLI 364 (667)
Q Consensus 289 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 364 (667)
..|++++|...+++... | +...+..+...+...|+.+ |...+..+......+....+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~------------------- 182 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA------------------- 182 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH-------------------
Confidence 88888888888877654 2 3445555666666666666 66666655443222211111
Q ss_pred HHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC----CCcchHH
Q 005969 365 IRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER----PDIVSWN 440 (667)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 440 (667)
.+ ..+...|++++|...++. +.+ ++...+.
T Consensus 183 -------------~~-~~l~~~g~~~eA~~~~~~--------------------------------~l~~~~~~~~~~~~ 216 (656)
T PRK15174 183 -------------TC-LSFLNKSRLPEDHDLARA--------------------------------LLPFFALERQESAG 216 (656)
T ss_pred -------------HH-HHHHHcCCHHHHHHHHHH--------------------------------HHhcCCCcchhHHH
Confidence 11 124455666666664443 322 1222233
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh----HHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL----GSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.+...+...|++++|+..++++.+.. +.+...+..+...+...|+.+. |...++.+.+.. |.+...+..+...
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 293 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Confidence 34556667777777777777777643 3345566666677777777764 677777776653 4466677777777
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCCHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVA-LIAVLTACRHGGLVREG 592 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~li~~~~~~g~~~~A 592 (667)
+...|++++|...+++.. .| +...+..+...+...|++++|+..++++... .|+... +..+..++...|++++|
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777665 23 3345666677777777888888777777764 454433 33345567777888888
Q ss_pred HHHHHHhHHh
Q 005969 593 MELFERMNRS 602 (667)
Q Consensus 593 ~~~~~~~~~~ 602 (667)
...|++..+.
T Consensus 372 ~~~l~~al~~ 381 (656)
T PRK15174 372 ESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHh
Confidence 8877776444
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2.4e-13 Score=142.25 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=130.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCC----CCCchhHHhHHHHHHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEI----ISSDTFVCNMLIDMYG 518 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 518 (667)
+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++.+..... .+++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 445556667777777777777666554555666677777777777777777776655431 1223333456677777
Q ss_pred hcCChHHHHHHHHhcCC--C-------------Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTD--R-------------NV---ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
..+++++|..+++.+.+ | |. ..+..++..+...|++.+|++.++++.... +-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77777777777776653 1 11 133445677778888888888888887742 33677778888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIW 644 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 644 (667)
..+...|.+.+|++.++.. .. --+-+..+....+.++...|++.+|..+.++.. ..|+....
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a-~~-l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAV-ES-LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHhcCCHHHHHHHHHHH-hh-hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888888888888888665 33 133334556677777788888888888876662 34444433
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=5.4e-15 Score=154.46 Aligned_cols=323 Identities=8% Similarity=-0.080 Sum_probs=258.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhc
Q 005969 9 FNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGR 87 (667)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (667)
.-.++..+.+.|++.+|..+++........+....|...+. +..++++.|...++++.+.. |.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH
Confidence 34567788899999999999999999855555556665655 66679999999999999987 7778888889999999
Q ss_pred cCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHH
Q 005969 88 HGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIH 164 (667)
Q Consensus 88 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 164 (667)
.|++++|...|++... | +...+..+...+...|++++|...++.+...... +...+.. +..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 9999999999998764 4 4567888999999999999999999988765422 2233333 34477899999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhH----HHHHHHHhHhCC
Q 005969 165 GLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGK----ALELYLRMSVDI 237 (667)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g 237 (667)
+.+.+....++...+..+...+...|++++|...|++... .+...+..+...+.+.|++++ |...|++....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 9988775444555556667889999999999999988763 355677888899999999986 89999998865
Q ss_pred cCC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--CCccc-HHH
Q 005969 238 VFP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNIVS-WNA 313 (667)
Q Consensus 238 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ 313 (667)
.| +...+..+...+...|++++|...++...+.... +...+..+..++.+.|++++|.+.|+.+.. |+... +..
T Consensus 280 -~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 -NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34 4556777888899999999999999999887533 456677888999999999999999998875 44333 333
Q ss_pred HHHHHhcCCChH-HHHHHHHHHHcCC
Q 005969 314 LILGYASKSSPT-SIFLLIELLQLGY 338 (667)
Q Consensus 314 li~~~~~~~~~~-a~~~~~~m~~~~~ 338 (667)
+...+...|+.+ |...+.+..+...
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 456788999999 9999999877543
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.5e-13 Score=147.11 Aligned_cols=385 Identities=10% Similarity=-0.044 Sum_probs=231.8
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFC 130 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 130 (667)
+.++|..+++...... +.+...+..+..++.+.|++++|..++++... | +...+..+...+...|++++|+..++
T Consensus 30 ~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 30 QDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444444322 45555567777777788888888888877532 3 34556667777778888888888888
Q ss_pred HHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC-CCc--
Q 005969 131 ELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-RDV-- 207 (667)
Q Consensus 131 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-- 207 (667)
+..+.. +.+.. +..+..++...|+.+.|...++.+.+... .+...+..+..++...|..+.|.+.++.... |+.
T Consensus 108 ~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 108 QLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 877652 23344 66677777778888888888888877643 2455556677777777888888887776664 110
Q ss_pred ----hhHHHHHHHHH-----ccCCh---hHHHHHHHHhHhC-CcCCChh-hHHH----HHHHhhccCChhHHHHHHHHHH
Q 005969 208 ----VSWNTIIGALA-----ESENF---GKALELYLRMSVD-IVFPNQT-TFVY----VINSCAGLQNSILGKSIHAKVI 269 (667)
Q Consensus 208 ----~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~ 269 (667)
......+.... ..+++ ++|++.++.+... ...|+.. .+.. .+..+...|+.++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 01122222221 12233 6788888887754 2233321 1111 1334556688899999999888
Q ss_pred HhcCC-CCchHHHHHHHHHHhcCChHHHHHHHhccCCCC-------cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCC
Q 005969 270 KNALE-CDVFVGSALVDFYAKCDNLEGAHLCFSEISNKN-------IVSWNALILGYASKSSPT-SIFLLIELLQLGYRP 340 (667)
Q Consensus 270 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~ 340 (667)
+.+.+ |+. ....+...|...|++++|...|+++...+ ......+..++...|+.+ |...+..+..... +
T Consensus 265 ~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P-~ 342 (765)
T PRK10049 265 AEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP-P 342 (765)
T ss_pred ccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC-c
Confidence 77643 322 22335678888999999999988875422 123455666778888888 8888888776421 1
Q ss_pred CHhhHHHHHHHhhhhhhhHHHHHHHHhcCcch---hhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHH
Q 005969 341 NEFTFSHVLRSSLAFQLLQLHCLIIRMGYENY---EYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIY 415 (667)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~ 415 (667)
....+.. ..-.|+ ...+..+...+...|+.++|++.++++ ..|.+...+..+..++
T Consensus 343 ~~~~~~~-------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 343 FLRLYGS-------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred eEeecCC-------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1100000 000111 112235666777889999999888776 4455555556666666
Q ss_pred hhcCChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005969 416 NRTGQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRA 464 (667)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 464 (667)
...|++++|++.+++... |+ ...+......+...|++++|+.+++++.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666665553 32 23334444455556666666666666665
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=5.3e-13 Score=139.80 Aligned_cols=436 Identities=9% Similarity=0.018 Sum_probs=256.8
Q ss_pred HhhccCChhHHHHhhccCCC--CCch-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPR--KSLV-TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFG 160 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 160 (667)
...+.|+++.|+..|++..+ |+.. .-..++..+...|+.++|+..+++... ...........+...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35577777777777777654 3321 122666777777777777777777761 1111222222234466667777777
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC--CchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR--DVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
.++++.+.+.... ++.++..++..+...++.++|++.++++... +...+-.++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-- 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-- 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--
Confidence 7777777776532 3556666677777777777777777777643 3233322222223345555577778777765
Q ss_pred CC-ChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHH
Q 005969 239 FP-NQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILG 317 (667)
Q Consensus 239 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 317 (667)
.| +...+..++.++.+.|-...|.++..+- |+..+-...... ..+.|.+..+.-..++.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~--------- 258 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR--------- 258 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc---------
Confidence 34 3444455666666666666666554442 211111110000 01111111111100000
Q ss_pred HhcCCC---hH-HHHHHHHHHH-cCCCCCHhh-HHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHH
Q 005969 318 YASKSS---PT-SIFLLIELLQ-LGYRPNEFT-FSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISD 391 (667)
Q Consensus 318 ~~~~~~---~~-a~~~~~~m~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (667)
....+ .+ ++.-+..+.. .+..|.... |... ..-.+-++...|++.+
T Consensus 259 -~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~---------------------------~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 259 -SETERFDIADKALADYQNLLTRWGKDPEAQADYQRA---------------------------RIDRLGALLVRHQTAD 310 (822)
T ss_pred -cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH---------------------------HHHHHHHHHHhhhHHH
Confidence 00011 22 3444444333 122232221 1110 0134567778888999
Q ss_pred HHHHHHhcC---CCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC---------CcchHHHHHHHHHHcCChhHHHHHH
Q 005969 392 ALAFVTALN---IPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP---------DIVSWNIVIAACAHNGDYKEVLELF 459 (667)
Q Consensus 392 a~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~ 459 (667)
+.+.|+.+. .+........+.++|...+++++|+.+++.+..+ +......|..++...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 999888884 3334445567888888888888888888876431 1222466788888899999999999
Q ss_pred HHHHHcCC-----------CC--CHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHH
Q 005969 460 KYMRAARI-----------YP--DNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGS 525 (667)
Q Consensus 460 ~~m~~~g~-----------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 525 (667)
+++.+.-. .| |-. .+..++..+.-.|++.+|++.++.+.... |-|......+...+...|.+.+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHH
Confidence 98887311 12 222 23445566777888888888888887664 5577888888888888888888
Q ss_pred HHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhH
Q 005969 526 SVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVA 575 (667)
Q Consensus 526 A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~ 575 (667)
|++.++... .| +..+....+.++...+++.+|..+.+.+... .|+...
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchh
Confidence 888887655 34 4456666777777778888888888777774 565443
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.1e-13 Score=126.18 Aligned_cols=450 Identities=14% Similarity=0.152 Sum_probs=283.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHhcCChhHHHHhhccCCC--C------CchhHHHHH
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVA-NSLVNMYFQCAGIWSAEKMFKDVEI--R------DVVSWNTII 214 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 214 (667)
...|.+-|.......+|...++.+.+...-|+.... ..+.+.|.+...+.+|.++++.... | .+...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 334455566666777888888888887766665443 2456677888888888888765431 2 123445555
Q ss_pred HHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHH--------HHHHHH
Q 005969 215 GALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG--------SALVDF 286 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~ 286 (667)
-.+.+.|++++|+.-|+...+. .|+..+-..++-++...|+.++..+.|..|......||..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678889999999999888765 688777666666666678888888888888776443332211 112211
Q ss_pred HHhcCChH--------HHHH-------HHhccCCCCccc---HH----------HH--------HHHHhcCCChH-HHHH
Q 005969 287 YAKCDNLE--------GAHL-------CFSEISNKNIVS---WN----------AL--------ILGYASKSSPT-SIFL 329 (667)
Q Consensus 287 ~~~~g~~~--------~a~~-------~~~~~~~~~~~~---~~----------~l--------i~~~~~~~~~~-a~~~ 329 (667)
-.+...+. .|.+ +..-+..|+-.. |. .| ...+.++|+++ |.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 11111110 1111 111111121100 00 00 01133444444 4444
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHh--hCCHHHHHHHHHhc--CCCCCc
Q 005969 330 LIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAK--SGLISDALAFVTAL--NIPRAV 405 (667)
Q Consensus 330 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~--~~~~~~ 405 (667)
+.-+.... -......-+.|...+.- -.++..|.++-+.. ...-+.
T Consensus 442 lkv~~~kd-------------------------------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 442 LKVFEKKD-------------------------------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HHHHHhcc-------------------------------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 44333221 11111111122222221 23344444433222 111111
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVI---AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS 482 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 482 (667)
.....-.+.....|++++|.+.+++....|...-.+|. -.+-..|++++|++.|-++..- +..+...+..+.+.|-
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye 569 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYE 569 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 11112222344568888888888888776665544443 3466789999999999887643 3445667777888888
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALE 559 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 559 (667)
...+...|.+++..... .+|.|+....-|...|-+.|+...|.+.+-+-- ..++.+..-|...|....-+++++.
T Consensus 570 ~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 88899999988876654 467799999999999999999999998776544 2477788888888999989999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 560 KFREMEFLGFKPDRVALIAVLTACR-HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 560 ~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
+|++..- ++|+.+-|..++..|. +.|++.+|.++++...++ ++-+...+..|++.+...|. .+|.++-++
T Consensus 648 y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 648 YFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 9999876 7999999999888775 589999999999999544 88899999999999888773 444444333
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.1e-11 Score=123.56 Aligned_cols=609 Identities=12% Similarity=0.077 Sum_probs=347.3
Q ss_pred CCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccC---CCCCchhHHHHHHHHHhCCChHHHHH
Q 005969 51 DSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDM---PRKSLVTWNSIVSIFGKHGFVEDCMF 127 (667)
Q Consensus 51 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~ 127 (667)
..++.++|..++.+++++. +.....|..|...|-..|+.+++...+--. ...|..-|..+..-..+.|++++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3456777777777777766 667777777777777777777776655332 22355667777777777777777777
Q ss_pred HHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHH----HHHHHHhcCChhHHHHhhccCC
Q 005969 128 LFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANS----LVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 128 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
+|.+.++.. +++...+-.-...|-+.|+...|..-+.++.....+.|..-... +++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777654 23434444455666677777777777777777654333332222 3444555566666766666554
Q ss_pred C-----CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH--------------------------HHHHHHh
Q 005969 204 I-----RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF--------------------------VYVINSC 252 (667)
Q Consensus 204 ~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--------------------------~~ll~~~ 252 (667)
. -+...++.++..+.+...++.|......+......+|..-+ -.+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 2 23445667777777777777777777666552222222111 1122334
Q ss_pred hccCChhHHHHHHHHHHHhc--CCCCchHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHhcCCChH-
Q 005969 253 AGLQNSILGKSIHAKVIKNA--LECDVFVGSALVDFYAKCDNLEGAHLCFSEISN----KNIVSWNALILGYASKSSPT- 325 (667)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~- 325 (667)
...+..+....+.....+.. +..+...|.-+..+|...|++..|..+|..+.. .+...|-.+...|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555555566666666665 333556677777777777777777777777655 34456777777777777777
Q ss_pred HHHHHHHHHHcCCCCCH----hhHHHHHHHhhhhh-hhHHHHH--------HHHhcCcchhhhHHHHHHHHHhhCCHHHH
Q 005969 326 SIFLLIELLQLGYRPNE----FTFSHVLRSSLAFQ-LLQLHCL--------IIRMGYENYEYVLGSLMTSYAKSGLISDA 392 (667)
Q Consensus 326 a~~~~~~m~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 392 (667)
|.+.+...+.. .|+. ++.+++........ .++.... ....+..|...........+...|+.++-
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777766553 2221 23333332222111 1122222 22334556666666677777777877775
Q ss_pred HHHHHhcC-------------------------CCCCcchhHHHHHHHhhcCChhHHHHHHhcC--------CCCCc---
Q 005969 393 LAFVTALN-------------------------IPRAVVPANIIAGIYNRTGQYNETVKLLSQL--------ERPDI--- 436 (667)
Q Consensus 393 ~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~--- 436 (667)
..+-..+- .+........+..+-.+.++.....+-...- ...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 55544330 0000111111222222222222111111111 01111
Q ss_pred -chHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHhccCChhhHHHHHHHHHHh---CCCCCch
Q 005969 437 -VSWNIVIAACAHNGDYKEVLELFKYMRAARI--YPDN---YTFVSLLSACSKLCNLALGSSLHGLIKKT---EIISSDT 507 (667)
Q Consensus 437 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 507 (667)
..+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.+... ...+.-.
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1234567788899999999999988876542 2222 12234456677889999999998888765 1112235
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH-H
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN--VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLT-A 582 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~-~ 582 (667)
..|+..+....+.++----.+.+.... .|+ ...+....+-....+.+..|+..+-+.... .|+....+..+. +
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHH
Confidence 566655566665555444444444333 222 222223334455677888899888777663 677444433222 2
Q ss_pred Hh--------ccC--CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CC------CC-----
Q 005969 583 CR--------HGG--LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FP------PN----- 640 (667)
Q Consensus 583 ~~--------~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~------p~----- 640 (667)
+. ..+ ..-.+..++.+..+-++..-....+-.+.++|-..|-..-|..++++.- +. |.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~d 863 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYD 863 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCccc
Confidence 21 111 1334566666663332332345678889999999999999999999872 21 11
Q ss_pred --HHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 641 --ALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 641 --~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
...-.-|.-.|..+|+...|..+.++
T Consensus 864 LrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 864 LRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 12223445568899999999888764
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=2.6e-10 Score=109.51 Aligned_cols=590 Identities=12% Similarity=0.041 Sum_probs=353.6
Q ss_pred ChHHHHHHHHHHHHCCCC--------CCchhHhHhh----ccCCc---cchhhHHHHHHHHHhCCCCCChhHHhhHHHHh
Q 005969 21 YVEDALRMFLYMINRGFE--------PTQFTFGGLL----SCDSL---NPVEGAQLQASVLKNGLFCADAFVGTALLGLY 85 (667)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll----~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (667)
+..+|+.-+-.|.-..+. .|+..|..=+ ....+ +...|+.++....+.+.-.|..++.+ ...=
T Consensus 218 kig~ar~~l~~~kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAs--ArLE 295 (913)
T KOG0495|consen 218 KIGQARNTLMDMKLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIAS--ARLE 295 (913)
T ss_pred hhhHHHHHHHhhhhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHH--HHHH
Confidence 445666666666654322 2333343333 22222 88999999999999884444444444 3444
Q ss_pred hccCChhHHHHhhccCC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCC--------------------------
Q 005969 86 GRHGCLDEVVSVFEDMP---RKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSE-------------------------- 136 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------------------- 136 (667)
-..|++..|..+...=- .++...|-.-+ +....+.|..+.-...+.-
T Consensus 296 EvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRK 371 (913)
T KOG0495|consen 296 EVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRK 371 (913)
T ss_pred HHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHH
Confidence 45677777777764321 12233332211 1222333333333332211
Q ss_pred ---CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhH
Q 005969 137 ---VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSW 210 (667)
Q Consensus 137 ---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 210 (667)
.-|+.+. |-++.....+.+.|.-++....+.- +.+...| -+|++..-++.|.++++... ..+...|
T Consensus 372 ALe~iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IW 443 (913)
T KOG0495|consen 372 ALEHIPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIW 443 (913)
T ss_pred HHHhCCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHH
Confidence 0111111 1122222223333444444443321 2222222 23333344444444444332 2233444
Q ss_pred HHHHHHHHccCChhHHHHHHHH----hHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC--CchHHHHHH
Q 005969 211 NTIIGALAESENFGKALELYLR----MSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC--DVFVGSALV 284 (667)
Q Consensus 211 ~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 284 (667)
-+-...=-.+|+.+...+++++ +...|+..+...|..=...|-..|.+-.+..+.......|++. -..+|..-.
T Consensus 444 itaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da 523 (913)
T KOG0495|consen 444 ITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDA 523 (913)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhH
Confidence 4433333445555555544432 3334555555555555555555555555555555555555433 123444445
Q ss_pred HHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHH
Q 005969 285 DFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQL 360 (667)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~ 360 (667)
..|.+.+.++-|..+|....+ .+...|......--..|..+ -..+|.+......+
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk--------------------- 582 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--------------------- 582 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc---------------------
Confidence 555555555555555554433 22233433333333444444 34444444433221
Q ss_pred HHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC--CCCc
Q 005969 361 HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE--RPDI 436 (667)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~ 436 (667)
....+-...+-+-..|++..|..++... -.|.+...+...+.....+.+++.|..+|.+.. .++.
T Consensus 583 -----------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 583 -----------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred -----------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 1222223445566679999999998887 566677778888888899999999999998876 4778
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN-YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
..|..-+..-.-.++.++|.+++++..+. -|+. ..|-.+-+.+-+.++.+.|...+..-.+. +|..+..|-.|..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHH
Confidence 88887777777788999999999888774 4554 46667777788888888888877655444 4656778888888
Q ss_pred HHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHH
Q 005969 516 MYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
.=-+.|.+-.|..+++... .| +...|-..|+.-.+.|+.+.|..+..+..+. ++.+...|.--|...-+.++-...
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 8888899999999999766 44 6678888999999999999999988887775 455566777777777666664444
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
...++ + ..-|+++...+...+....++++|.+.|.+. ...|| -.+|.-+.....++|.-++-+.++.+|
T Consensus 807 ~DALk----k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 807 IDALK----K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHH----h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44333 2 5667888888999999999999999999887 34444 688888888999999777666665554
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=8.6e-13 Score=130.49 Aligned_cols=608 Identities=12% Similarity=0.033 Sum_probs=327.2
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHhh
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (667)
.||..||.++|.-|+..|+.+.|- +|..|..+....+...++.++. -+.. +.+.+. .|.+.+|..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHHHH
Confidence 588899999999999999999999 9999998877777777777776 2222 555442 577778888
Q ss_pred HHHHhhccCChhH---HHHhhccCC-----------------------C--CCc----------hhHHHHHHHHHh----
Q 005969 81 LLGLYGRHGCLDE---VVSVFEDMP-----------------------R--KSL----------VTWNSIVSIFGK---- 118 (667)
Q Consensus 81 l~~~~~~~g~~~~---a~~~~~~~~-----------------------~--~~~----------~~~~~li~~~~~---- 118 (667)
|..+|..+|++.. +.+-+..+. + ||. ..|..++..+.+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 8888888877543 333111110 0 111 122233332211
Q ss_pred --CCCh-----------HHHHHHHHHHHHCCC-cCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 005969 119 --HGFV-----------EDCMFLFCELVRSEV-ALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVN 184 (667)
Q Consensus 119 --~~~~-----------~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (667)
.+.+ ....+++ .|.+.+. .|++.+|..++......|+++.|..++..|.+.|++.+..-+-.|+-
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl-~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLL-NMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHH-HHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 1100 0111111 1222222 48888888888888888888888888888888888888776666665
Q ss_pred HHHhcCChhHHHHhhccCC----CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhH
Q 005969 185 MYFQCAGIWSAEKMFKDVE----IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSIL 260 (667)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 260 (667)
+ .++..-++.+++.|. .|+..|+...+-.+..+|....+.+..+ .....+...+..++++.....+++.
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq----~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ----LAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc----hhhhhhHHHHHHHhcccHhHHHHHH
Confidence 5 555555555555543 5788888777777777555322221110 0000111222333333222222222
Q ss_pred -----HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCC-------CcccHHHHHHHHhcCCChH-HH
Q 005969 261 -----GKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNK-------NIVSWNALILGYASKSSPT-SI 327 (667)
Q Consensus 261 -----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~-a~ 327 (667)
....+....=.|+.....+|...+. ...+|+-+...++...+..| ++..|..++.-|.+.-+.- ..
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 1222222222333333333332222 22356666666666655442 3344544444443322111 11
Q ss_pred HHHH--HHHHc--C-------------CCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC-------cchhhhHHHHHHHH
Q 005969 328 FLLI--ELLQL--G-------------YRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY-------ENYEYVLGSLMTSY 383 (667)
Q Consensus 328 ~~~~--~m~~~--~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 383 (667)
.++. +.... + ..|+..--. +. .+...-..+.. .+-..+-+.++..+
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~--lv--------~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQ--LV--------GLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHH--Hh--------hhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 1111 11110 0 122211100 00 01111111111 12233445677777
Q ss_pred HhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc------chHHHHHHHHHHcCChhHHHH
Q 005969 384 AKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI------VSWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~ 457 (667)
++.-+..+++..-+......-...|..++..+....+.+.|..+.++...++. .-+..+.+...+.+....+..
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 77777777765544443333337788888888999999999988888875443 446778888888889999999
Q ss_pred HHHHHHHcCC-CCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-
Q 005969 458 LFKYMRAARI-YPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT- 534 (667)
Q Consensus 458 ~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 534 (667)
++.++.+.-. .|+ ..++-.+++.....|+.+...++++.+...|... + .-++....+.++...|.++++...
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t----gPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T----GPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c----ccceEEEeeccchhhhhhcchHHHH
Confidence 9998877422 232 3456667777788889888888888888777543 2 345555667777777777776554
Q ss_pred --CCChhhHHHHHHHHHh--CCChHHHHHHHHHHH---HcCC---------CCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 535 --DRNVITWTALISALGL--NGFAQRALEKFREME---FLGF---------KPDRVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 535 --~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~---~~g~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
++.+.....+.+.+-+ ..+++++..+-.... +.|- .|...+-+.- ..|...|...-.....+.
T Consensus 625 kyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~R-Dr~~de~e~~~lEll~el 703 (1088)
T KOG4318|consen 625 KYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGR-DRDTDEGEIVPLELLLEL 703 (1088)
T ss_pred HhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCC-ccccccCccccHHHHHHH
Confidence 2333322222222221 112333322211111 1110 0000000000 112222222222222222
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCR 655 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~ 655 (667)
+ .. ......|+..|.+.|+++.|..+|.++++.|+..+...|...++++.
T Consensus 704 t-~~------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n 753 (1088)
T KOG4318|consen 704 T-HE------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMN 753 (1088)
T ss_pred H-hH------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhc
Confidence 2 11 11233477788888888888888888888888888887777777664
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.1e-13 Score=123.40 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=135.2
Q ss_pred hcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 005969 417 RTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSL 493 (667)
Q Consensus 417 ~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (667)
..|+.++|.+.|-++. ..+..+...+...|-...+...|++++...... ++.|+..+..|...|-+.|+...|.+.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 3444444444554443 356666777788888889999999999887664 566888999999999999999999988
Q ss_pred HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHH-HhCCChHHHHHHHHHHHHcCCC
Q 005969 494 HGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISAL-GLNGFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~g~~ 570 (667)
+-.--+. .|.+..+...|...|....-++++...|++.. +|+..-|..|+..| .+.|++.+|.++|+...+. ++
T Consensus 615 ~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp 691 (840)
T KOG2003|consen 615 HYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP 691 (840)
T ss_pred hhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc
Confidence 7654443 56688999999999999999999999999754 89999999998665 5689999999999999876 66
Q ss_pred CCHhHHHHHHHHHhccCC
Q 005969 571 PDRVALIAVLTACRHGGL 588 (667)
Q Consensus 571 p~~~~~~~li~~~~~~g~ 588 (667)
-|..+...|++.|...|-
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 788899999999887774
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=5.9e-11 Score=118.44 Aligned_cols=529 Identities=12% Similarity=0.036 Sum_probs=331.3
Q ss_pred hhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHH
Q 005969 85 YGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGE 161 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 161 (667)
....|+.++|.+++.++.+ .+..+|.+|...|-..|+.+++...+-..-... +-|...|..+-....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999875 356689999999999999999988776654432 446678888888888999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCc----h----hHHHHHHHHHccCChhHHHHHHHHh
Q 005969 162 QIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDV----V----SWNTIIGALAESENFGKALELYLRM 233 (667)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m 233 (667)
-.+...++.. +++...+-.-...|-+.|+...|.+-|.++.+.+. . .-..+++.+...++-+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999886 34555555667788899999999888777654222 1 2223456677777778888888776
Q ss_pred HhC-CcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhc---------------------------CCCCchHHHHHHH
Q 005969 234 SVD-IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA---------------------------LECDVFVGSALVD 285 (667)
Q Consensus 234 ~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li~ 285 (667)
... +-..+..++++++..+.+...++.+......+.... ..++..+. -+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 652 234455667777777888888888877777666521 12222221 1122
Q ss_pred HHH--hcCChHHHHHHHhccCC----CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh
Q 005969 286 FYA--KCDNLEGAHLCFSEISN----KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL 358 (667)
Q Consensus 286 ~~~--~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (667)
++. +.+...+++.-|..... -++..|.-+..++...|.+. |+.++..+.....--+...|
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw------------- 452 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW------------- 452 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh-------------
Confidence 222 23333333333322222 23455666777788888888 88888777664333333333
Q ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc
Q 005969 359 QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI 436 (667)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 436 (667)
-.+...|...|..++|.+.|+.. ..|.+...--.+...+.+.|+.++|.+.++.+..||.
T Consensus 453 ------------------~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 453 ------------------YKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred ------------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 47888899999999999999988 5666677777888899999999999999999875552
Q ss_pred ------------chHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHh
Q 005969 437 ------------VSWNIVIAACAHNGDYKEVLELFKYMRAAR-----IYP-----------------DNYTFVSLLSACS 482 (667)
Q Consensus 437 ------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-----------------~~~~~~~ll~~~~ 482 (667)
.........+...|+.++=+.+...|+..+ +-| ...+...++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 222334455667788776555554444321 111 1122223333333
Q ss_pred ccCChhhHHHHHHH------HHHhCCCCCch-hHHhHHHHHHHhcCChHHHHHHHHhcCCC-----Chh----hHHHHHH
Q 005969 483 KLCNLALGSSLHGL------IKKTEIISSDT-FVCNMLIDMYGKCGSIGSSVKIFNEMTDR-----NVI----TWTALIS 546 (667)
Q Consensus 483 ~~~~~~~a~~~~~~------~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~----~~~~li~ 546 (667)
+.++......-... ....+....+- ..+.-++..+++.+++.+|+.+...+.+. +.. .-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 33332222221111 11112111111 34566778889999999999999887742 111 2234566
Q ss_pred HHHhCCChHHHHHHHHHHHHc-CC--CCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHh
Q 005969 547 ALGLNGFAQRALEKFREMEFL-GF--KPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE--MDHYHCVVDLLV 620 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~-g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 620 (667)
+.+..+++..|...++.|... +. .|. ...|+...+...+.|+-.--..++.... ..+|+ +.........+.
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHh
Confidence 777889999999999999874 11 232 2244544455555554333333333321 22222 223333445566
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005969 621 RYGHLKEAEKIITTM-PFPPNALIWRTFLEG 650 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~ 650 (667)
..+.+..|++.+-+. ...||....+.++..
T Consensus 752 ~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred hccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 788899998877665 356776555555444
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=3.7e-10 Score=108.49 Aligned_cols=438 Identities=9% Similarity=0.020 Sum_probs=255.8
Q ss_pred CChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHH----HHhcCCCchHHHHHHHHHHHhcCChhHH
Q 005969 120 GFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLV----IKNGFDYELLVANSLVNMYFQCAGIWSA 195 (667)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A 195 (667)
.-++.|..+++...+. ++-+...|.+....=-..|+.+.+.++++.- ...|+..+..-|-.=...+-+.|..-.+
T Consensus 420 etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 3344444444444432 3334444444333333444444444444332 2234444444444444444444444444
Q ss_pred HHhhccCC------CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHH
Q 005969 196 EKMFKDVE------IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVI 269 (667)
Q Consensus 196 ~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 269 (667)
..+..... +.--.+|..-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....+++...
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33333322 011235555555666666666666666655543 22334445555544455566666666666666
Q ss_pred HhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhH
Q 005969 270 KNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTF 345 (667)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~ 345 (667)
..-.+ ....|-....-+...|+...|..++....+ | +...|-+-+..-..+..++ |..+|.+... ..|+...|
T Consensus 578 ~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 578 EQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred HhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 55322 334444445555566777766666665544 2 2334555555555566666 6666655443 22333222
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhH
Q 005969 346 SHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNE 423 (667)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 423 (667)
.--+...--.++.++|.+++++. .-|.-...|.++...+.+.++.+.
T Consensus 655 -------------------------------mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 655 -------------------------------MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred -------------------------------HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 24444445567888888888776 334445566777778888888888
Q ss_pred HHHHHhcCCC--CCcc-hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 424 TVKLLSQLER--PDIV-SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 424 a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
|.+.|..-.+ |+.. .|-.+...=-+.|++-+|..++++..-++ +-+...|-..|+.-.+.|+.+.|..+..+..+.
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888776664 4443 45555555566778888888888877654 445667778888888888888888887777665
Q ss_pred CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 005969 501 EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAV 579 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l 579 (667)
.|.+...|..-|....+.++-......++... .|....-.+...+-...++++|.+.|.+.++. .|| ..+|..+
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~f 857 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWF 857 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHH
Confidence 35566677777777777777666666555544 35555556666666777788888888887774 454 4577777
Q ss_pred HHHHhccCCHHHHHHHHHHh
Q 005969 580 LTACRHGGLVREGMELFERM 599 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~ 599 (667)
...+.+.|.-+.-.+++...
T Consensus 858 ykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 77777777777777777766
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2.1e-09 Score=99.43 Aligned_cols=493 Identities=11% Similarity=0.057 Sum_probs=268.5
Q ss_pred CChhHHhhHHHHhhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChh-hHHHHH
Q 005969 73 ADAFVGTALLGLYGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTES-SFVGVI 148 (667)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li 148 (667)
.+...|.-..+-=..++++..|.++|+.... .+...|-.-+..-.++.++..|..++++.... -|-.. .+-.-+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 3344444444444445677777777777653 45666666677777777777777777777652 23222 122222
Q ss_pred HHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC--CCCchhHHHHHHHHHccCChhHH
Q 005969 149 HGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE--IRDVVSWNTIIGALAESENFGKA 226 (667)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 226 (667)
..=-..|++..|.++|+...+- .|+...|++.|+.=.+-+.++.|..++++.. .|++.+|--...-=.++|+...+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 2223445666666666655542 4555566666655555555555555555543 45555555555544555555555
Q ss_pred HHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC-
Q 005969 227 LELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN- 305 (667)
Q Consensus 227 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 305 (667)
..+|+...+. --|... +...+.++...-.++...+.|.-+|+-..+
T Consensus 227 R~VyerAie~--~~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHH--hhhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544332 001111 122233333333334444455444433322
Q ss_pred -C---CcccHHHHHHHHhcCCChH-HHHHH---HHHH-HcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhH
Q 005969 306 -K---NIVSWNALILGYASKSSPT-SIFLL---IELL-QLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVL 376 (667)
Q Consensus 306 -~---~~~~~~~li~~~~~~~~~~-a~~~~---~~m~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (667)
| ....|.....-=-+-|+.. ..+.+ +.+. +.-+..++..|. ++
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD----------------------------sW 325 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD----------------------------SW 325 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch----------------------------HH
Confidence 1 1111222222112223322 11111 0111 000111111121 11
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcch--h--------HHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVP--A--------NIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNI 441 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~--~--------~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 441 (667)
-..+..-...|+.+...++|++. ++||...- + +..+-.=....+.+.+.++++...+ ....||..
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 24455555667777777777776 55553221 1 1112222345667777777766553 22334433
Q ss_pred H----HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 442 V----IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 442 l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
+ ...-.++.++..|.+++...+ |.-|...+|...|..=.+.++++....++++..+-+ |.+-.+|.-....=
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHH
Confidence 3 333456788888988888766 567888899999988888999999999999988875 44667777777777
Q ss_pred HhcCChHHHHHHHHhcC-CCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-----ccC
Q 005969 518 GKCGSIGSSVKIFNEMT-DRNV----ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR-----HGG 587 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-----~~g 587 (667)
...|+.+.|..+|+-.. +|.. ..|.+.|.--...|.+++|..+++++.+. .+....|-++...-. +.|
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccc
Confidence 78899999999998766 4533 35555666667788899999999998885 444445555544332 233
Q ss_pred -----------CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH----hhcCChHHHHHHHHhCC
Q 005969 588 -----------LVREGMELFERMNRSYGVEPEMDHYHCVVDLL----VRYGHLKEAEKIITTMP 636 (667)
Q Consensus 588 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~m~ 636 (667)
....|..+|++....+.-..+..--..|+.++ ...|...+...+-..|+
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 45678888887643322222222222333333 34555555555555554
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.4e-13 Score=129.53 Aligned_cols=211 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHH
Q 005969 446 CAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGS 525 (667)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 525 (667)
....++++.|...++++...+.. +...+..++.. ...+++++|.+++...-+.. + ++..+..++..+.+.+++++
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--G-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--c-ccchhhHHHHHHHHHhHHHH
Confidence 33344455555555544443211 23333333333 34445555544444333221 1 33344444444555555555
Q ss_pred HHHHHHhcC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 526 SVKIFNEMT-----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 526 A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+.++++.+. +++...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.+++...
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 555544432 123344444555555555555555555555553 343 334455555555555555555555555
Q ss_pred HHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 600 NRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
.+. .+.++..+..+..++...|+.++|..++++.. .+.|+.....+..++...|+.+.|..+.+
T Consensus 207 ~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 207 LKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred HHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333 24444445555555555555555555555542 22244444455555555555555554443
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=1.1e-10 Score=115.10 Aligned_cols=274 Identities=9% Similarity=-0.042 Sum_probs=205.8
Q ss_pred hCCHHHHHHHHHhc-CCCCCcchh-HHHHHHHhhcCChhHHHHHHhcCCC--CCcchHH--HHHHHHHHcCChhHHHHHH
Q 005969 386 SGLISDALAFVTAL-NIPRAVVPA-NIIAGIYNRTGQYNETVKLLSQLER--PDIVSWN--IVIAACAHNGDYKEVLELF 459 (667)
Q Consensus 386 ~~~~~~a~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 459 (667)
.|+++.|.+.+... ...+.+..+ ........+.|+++.|...+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 68999999888776 222222333 3334455888999999999988875 4433332 2356778899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch------hHHhHHHHHHHhcCChHHHHHHHHhc
Q 005969 460 KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT------FVCNMLIDMYGKCGSIGSSVKIFNEM 533 (667)
Q Consensus 460 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~ 533 (667)
+++.+.. +-+...+..+...|.+.|+++.+.+++..+.+.+..++.. ..|..++.......+.+...++|+..
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998864 3356788888899999999999999999999887654221 13333444444556677778888877
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc
Q 005969 534 TD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMD 610 (667)
Q Consensus 534 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (667)
.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+.+..++.+++.+..+...++ .+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 63 46778888899999999999999999998884 5555322 334445669999999999988544 455666
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.+..+...+.+.|++++|.+.|++. ...|+...+..+-..+.+.|+.+.|....++
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7889999999999999999999988 4789999999999999999999998777654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.3e-10 Score=102.26 Aligned_cols=293 Identities=11% Similarity=0.082 Sum_probs=210.0
Q ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCC---cchhHHHHHHHhhcCChhHHHHHHhcCCC
Q 005969 359 QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRA---VVPANIIAGIYNRTGQYNETVKLLSQLER 433 (667)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (667)
+-.......|++.++..-+....+.....++++|..+|+++ ..|-. ..+|..++-+-....+..---.....+.+
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 44445556677777777777777888889999999999988 33322 23333333222222222111112223345
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
-.+.|+.++.+-|.-.++.++|...|++..+. .|. ...|+.+-.-|....+...|.+.++.+.+-+ |.|-..|-.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYG 403 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYG 403 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhh
Confidence 56677777888888888899999999998874 444 4567777778888999999999999888875 558888999
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
|.++|.-.+...=|+-.|++.. +| |...|.+|..+|.+.++.++|++.|.+....| ..+...+..|.+.|-+.++.
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999998776 34 77899999999999999999999999988876 45678888899999999999
Q ss_pred HHHHHHHHHhHHhh---CCCCC--cchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 005969 590 REGMELFERMNRSY---GVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRCRI 656 (667)
Q Consensus 590 ~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~ 656 (667)
.+|...++..++.. |...+ ...---|...+.+.+++++|....... ...+...--+.|++.+++...
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 99998888775532 22222 222233566677888999988876665 345666666777777766543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=8.4e-11 Score=115.85 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=194.5
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CCCCCcchhH--HHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChh
Q 005969 380 MTSYAKSGLISDALAFVTAL-NIPRAVVPAN--IIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYK 453 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 453 (667)
.....+.|+.+.|.+.+.++ ..+|+..... .....+...|++++|...+++..+ .++.....+...|.+.|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 44557899999999999988 5556654333 346788999999999999999874 34567788899999999999
Q ss_pred HHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 454 EVLELFKYMRAARIYPDN-------YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 454 ~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
+|..++..+.+.+..++. .+|..++.......+.+...++++.+-+.- +.++.....+...+...|+.++|
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999998755332 133334444444455666666666664432 44788999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 527 VKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 527 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
.+++++..+.....--.++.+....++.+++++..++..+. .|+ +..+..+.+.|.+.|++++|.+.|+.... .
T Consensus 283 ~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~ 357 (398)
T PRK10747 283 QQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---Q 357 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c
Confidence 99999877422222223455556679999999999999986 565 55788899999999999999999998853 5
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|+...+..+..++.+.|+.++|.+++.+-
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 799999999999999999999999998865
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=8.5e-13 Score=124.20 Aligned_cols=252 Identities=17% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CC--CCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC---CcchHHHHHHHHHHcC
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NI--PRAVVPANIIAGIYNRTGQYNETVKLLSQLERP---DIVSWNIVIAACAHNG 450 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 450 (667)
.+...+.+.|++++|+++++.. .. +.+...+..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5688899999999999999643 33 445555666777888899999999999998853 34456666666 7899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
++++|.+++.+..+. .++...+..++..+.+.++++.+..+++.+......++++..|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887654 366677888888999999999999999998876544558888999999999999999999999
Q ss_pred HhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 005969 531 NEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP 607 (667)
Q Consensus 531 ~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (667)
++.. .| |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|++++|+.++++..+. .+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD 246 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccc
Confidence 9987 46 46788899999999999999999999988863 556778899999999999999999999998654 466
Q ss_pred CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 608 EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
|+.+...+.+++...|+.++|.++..+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8888999999999999999999988765
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=3.9e-08 Score=94.87 Aligned_cols=504 Identities=12% Similarity=0.126 Sum_probs=261.4
Q ss_pred HHHhcccCchHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHH
Q 005969 148 IHGLSNEQDLEFGEQIHGLVIKN-GFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKA 226 (667)
Q Consensus 148 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 226 (667)
+..+...|++......|+..+.. .+.....+|...+.-....|-++-+.+++++..+-++..-+-.|..+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 33334444444444444443332 12223334444555444555555566666655544444555666666666666666
Q ss_pred HHHHHHhHhC------CcCCChhhHHHHHHHhhccCChh---HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 005969 227 LELYLRMSVD------IVFPNQTTFVYVINSCAGLQNSI---LGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAH 297 (667)
Q Consensus 227 ~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 297 (667)
-+.+...... ..+.+...|..+....++.-+.- ....++..+...-..-=-..|.+|.+-|.+.|.+++|.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6666655432 12233333444444333332221 12222222222111112346788888888899999998
Q ss_pred HHHhccCC--CCcccHHHHHHHHhcCCChHHHHHHHHHH--HcCCCCCHhhHHHHHHHhhhhhhh---HHHHHHHHhcCc
Q 005969 298 LCFSEISN--KNIVSWNALILGYASKSSPTSIFLLIELL--QLGYRPNEFTFSHVLRSSLAFQLL---QLHCLIIRMGYE 370 (667)
Q Consensus 298 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 370 (667)
++|++... ..+.-|+.+..+|++-.....-..+. +. +.+-.-+.......+..+...-.. -+-..+.+ .-+
T Consensus 269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR-Qn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR-QNP 346 (835)
T ss_pred HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh-cCC
Confidence 88887654 34445566666655432222000111 11 112222222222222211111100 00011111 111
Q ss_pred chhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCC-----C-cchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHH
Q 005969 371 NYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPR-----A-VVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIV 442 (667)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~-----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 442 (667)
.+...+..-+. ...|+..+....|.+. ...| + ...+..+...|...|+.+.|..+|++..+.+-.+.+-|
T Consensus 347 ~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 11112211111 2235556666666655 1111 1 22355677778888888888888888876554444444
Q ss_pred HHHHH-------HcCChhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 005969 443 IAACA-------HNGDYKEVLELFKYMRAARIY----------P-------DNYTFVSLLSACSKLCNLALGSSLHGLIK 498 (667)
Q Consensus 443 i~~~~-------~~g~~~~A~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (667)
...+| ++.+++.|+++.++.....-. | +...|...+..--..|-++....+++.+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44443 456777787777765432111 1 12234444444445567777778888888
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC----CChh-hHHHHHHHHHh---CCChHHHHHHHHHHHHcCCC
Q 005969 499 KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----RNVI-TWTALISALGL---NGFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~---~~~~~~A~~~~~~~~~~g~~ 570 (667)
+..+.. +.........+....-++++.+++++-.. |++. .|+..+.-+.+ ...++.|..+|++..+ |++
T Consensus 505 dLriaT--Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 505 DLRIAT--PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHhcCC--HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 776544 33333333344455667888888887652 4443 56666555543 2357888888888888 677
Q ss_pred CCHhH--HHHHHHHHhccCCHHHHHHHHHHhHH--------------------hhCCCCCcchhHHHHHHH---------
Q 005969 571 PDRVA--LIAVLTACRHGGLVREGMELFERMNR--------------------SYGVEPEMDHYHCVVDLL--------- 619 (667)
Q Consensus 571 p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~--------- 619 (667)
|...- |-.....=-+-|-...|.+++++... -+|++-+..+|..-|..+
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 75432 22222222334666677777766422 246666655555544443
Q ss_pred -------hhcCChHHHHHHHHhCC--CC--CCHHHHHHHHHHHHhcCChh
Q 005969 620 -------VRYGHLKEAEKIITTMP--FP--PNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 620 -------~~~g~~~~A~~~~~~m~--~~--p~~~~~~~l~~~~~~~~~~~ 658 (667)
++.|..+.|..++..-. .. .+...|++.-..-++|||-+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 46688888888887663 23 35678888888888888844
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=1.7e-10 Score=114.36 Aligned_cols=276 Identities=10% Similarity=-0.055 Sum_probs=202.6
Q ss_pred HhhCCHHHHHHHHHhc-CCCCC-cchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcc--hHHHHHHHHHHcCChhHHHH
Q 005969 384 AKSGLISDALAFVTAL-NIPRA-VVPANIIAGIYNRTGQYNETVKLLSQLER--PDIV--SWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~A~~ 457 (667)
...|+++.|.+.+... ...|+ ...+-....+..+.|+++.|.+.+.+..+ |+.. ..-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4679999999998877 33343 33345556778888999999999988653 4443 23334777788999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh-HHHHHH---H----hcCChHHHHHH
Q 005969 458 LFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN-MLIDMY---G----KCGSIGSSVKI 529 (667)
Q Consensus 458 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~---~----~~~~~~~A~~~ 529 (667)
.++.+.+.. +-+...+..+...+.+.|+++.+.+.+..+.+.+..+ +..+. .-..++ . .....+...+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999864 3356688889999999999999999999999987543 33231 111111 2 22234455556
Q ss_pred HHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhH--H-HHHHHHHhccCCHHHHHHHHHHhHHhh
Q 005969 530 FNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVA--L-IAVLTACRHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 530 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~--~-~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (667)
++...+ .+...+..+...+...|+.++|.+.+++..+. .||... + ....-.....++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 665553 47788888999999999999999999999985 455442 1 22222234567888898888887555
Q ss_pred CCCCCc--chhHHHHHHHhhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 604 GVEPEM--DHYHCVVDLLVRYGHLKEAEKIITT---MPFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 604 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.+-++ ....++...+.+.|++++|.+.|++ ....|+...+..+...+...|+.+.|....++
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334 5677899999999999999999994 34689999999999999999999999887765
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=2.6e-10 Score=113.13 Aligned_cols=255 Identities=11% Similarity=-0.017 Sum_probs=186.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-CCCCCcc--hhHHHHHHHhhcCChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCC
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-NIPRAVV--PANIIAGIYNRTGQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGD 451 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 451 (667)
....+....|+.+.|.+.+... ...|+.. ........+...|++++|...++.+.+ | +...+..+...+...|+
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 3346677889999999999987 3334443 333458888999999999999999874 3 45677888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCChhhHHHHHHHHHHhCC--CCCchhHHhHHHHHHHhcCChHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSAC---SKLCNLALGSSLHGLIKKTEI--ISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
+++|.+++..+.+.+..+.......-..++ ...+..+.+.+.+..+.+... .+.++..+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999987543332211111221 222233333344444444321 113788999999999999999999
Q ss_pred HHHHHhcCC--CChhh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-H--hHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 527 VKIFNEMTD--RNVIT---WTALISALGLNGFAQRALEKFREMEFLGFKPD-R--VALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 527 ~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
.+++++..+ ||... ...........++.+.+.+.+++..+. .|+ + ....++.+.|.+.|++++|.+.|+.
T Consensus 283 ~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999998874 54432 122223334467889999999998875 565 4 5567899999999999999999996
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
. ......|+...+..+...+.+.|+.++|.+++++-
T Consensus 361 a-~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 361 V-AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred h-HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 33356899999999999999999999999999874
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2e-08 Score=93.22 Aligned_cols=420 Identities=11% Similarity=0.088 Sum_probs=227.7
Q ss_pred CChhHHHHhhccCC---CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCCh-hhHHHHHHHhhccCChhHHHHHH
Q 005969 190 AGIWSAEKMFKDVE---IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQ-TTFVYVINSCAGLQNSILGKSIH 265 (667)
Q Consensus 190 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 265 (667)
+++..|..+|++.. .+++..|--.+..=+++.....|..++++.... -|-. ..|--.+..--..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44444555555443 234444555555555566666666666655433 2221 11222222333446666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhcCCChH-HHHHHHHHHHc-CCCCC
Q 005969 266 AKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYASKSSPT-SIFLLIELLQL-GYRPN 341 (667)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~-~~~~~ 341 (667)
+.-.+- .|+...|.+.|+.-.+-+.++.|..+++...- |++.+|--...-=-++|... +..++....+. |-
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~--- 239 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD--- 239 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh---
Confidence 655443 56666666666666666666666666665432 55555555555445566666 65555543331 11
Q ss_pred HhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCC--cchhHHHHH---H
Q 005969 342 EFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRA--VVPANIIAG---I 414 (667)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~--~~~~~~l~~---~ 414 (667)
...-.. +|.++...-.++..++.|.-+|+-. ..|.+ ...|..+.. -
T Consensus 240 d~~~e~---------------------------lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 240 DEEAEI---------------------------LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 111111 1112222223333444444444333 11111 111111111 1
Q ss_pred HhhcCChhHHHHHHhcCC-----C---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-----
Q 005969 415 YNRTGQYNETVKLLSQLE-----R---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY--TFVSLLS----- 479 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~----- 479 (667)
++.....++++--=.+++ . .|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .+...|-
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHH
Confidence 111111222221111221 2 23445555566666678888888888887764 555321 1222211
Q ss_pred HH---hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH----HhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHh
Q 005969 480 AC---SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY----GKCGSIGSSVKIFNEMT--DRNVITWTALISALGL 550 (667)
Q Consensus 480 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~ 550 (667)
++ ....+++.+.++++.+.+. .|-...||.-+--+| .++.++..|.+++-... -|...+|...|..-.+
T Consensus 372 alyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11 2457788888888887773 454555555444333 46678888888887766 4777778877877778
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHH
Q 005969 551 NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (667)
.++++.+..++++.++-+ +-|..+|......=...|+.+.|..+|+-.+.+.........+.+.|+.=...|.++.|..
T Consensus 450 L~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 888888888888888842 3356777777777777888888888888775553333333445666666677888888888
Q ss_pred HHHhCC-CCCCHHHHHHH
Q 005969 631 IITTMP-FPPNALIWRTF 647 (667)
Q Consensus 631 ~~~~m~-~~p~~~~~~~l 647 (667)
+++++- -.+...+|-++
T Consensus 529 LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 529 LYERLLDRTQHVKVWISF 546 (677)
T ss_pred HHHHHHHhcccchHHHhH
Confidence 888772 33344455444
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.9e-09 Score=97.59 Aligned_cols=395 Identities=12% Similarity=0.043 Sum_probs=204.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCcCCC-hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIVFPN-QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECD-VFVGSALVDFY 287 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 287 (667)
+-....-|.++|.+++|++.|.+..+. .|| +..|.....+|...|+++.+.+--....+. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 334456678888899999988888764 677 666677777788888888877766665554 333 23445555667
Q ss_pred HhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHH--------HH---cCCCCCHhhHHHHHHHhhhh
Q 005969 288 AKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIEL--------LQ---LGYRPNEFTFSHVLRSSLAF 355 (667)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m--------~~---~~~~~~~~~~~~~l~~~~~~ 355 (667)
-..|++++|+.= .+-.++..++....-.- +.+++.+. .. ..+-|+.....+.+..+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777887777531 23333444433333222 33444321 11 11333433333333322111
Q ss_pred hhhHHHHHHHHhcCcchhhhHHHHHHHHHh-----hCCHHHHHHHHHhc----CCC-----CCcchhHHHHHH-------
Q 005969 356 QLLQLHCLIIRMGYENYEYVLGSLMTSYAK-----SGLISDALAFVTAL----NIP-----RAVVPANIIAGI------- 414 (667)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~----~~~-----~~~~~~~~l~~~------- 414 (667)
-. . ....+.+.....+..++.. ...+..|.+.+.+. ... .+... ..+..+
T Consensus 265 ~~----~----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF 335 (606)
T KOG0547|consen 265 PK----P----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTF 335 (606)
T ss_pred cc----c----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhh
Confidence 00 0 0011111111122222111 11233343333322 000 11111 111221
Q ss_pred HhhcCChhHHHHHHhcCCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHH
Q 005969 415 YNRTGQYNETVKLLSQLER--P-DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGS 491 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 491 (667)
+.-.|+.-.|..-|+.... | +...|--+...|....+.++-...|++..+.+ +-|+.+|..-.....-.++++.|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 1233445555555554442 1 12225555566666777777777777766643 334455655555555666677777
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005969 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLG 568 (667)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g 568 (667)
.-|++..... |.+...|--+.-+..+.++++++...|++..+ | .+..|+.....+..++++++|++.|+..++.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777766653 33455555555566666777777777776663 3 3446666667777777777777777776663
Q ss_pred CCCC-------HhHH--HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 569 FKPD-------RVAL--IAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 569 ~~p~-------~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|+ ..++ ..++..- =.+++..|.+++++..+ +.|. ...|..|.......|+.++|+++|++-
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333 1111 1111111 12667777777766532 2232 234666777777777777777777765
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=6.2e-11 Score=114.52 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=154.6
Q ss_pred HHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC------CCcchHHHHHHHHHHcCChhHHHHHH-
Q 005969 389 ISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER------PDIVSWNIVIAACAHNGDYKEVLELF- 459 (667)
Q Consensus 389 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~- 459 (667)
..+|...|..+ ..+.+......+..+|...+++++|+++|+.+++ .+...|.+.+..+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 44555555554 2333334444555566666666666666666653 3455566666544321 122222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChh
Q 005969 460 KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVI 539 (667)
Q Consensus 460 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 539 (667)
+++.+. -+-.+.+|..+.++|.-+++.+.|++.|++..+.+ |....+|+.+..-+.....+|.|...|+.....|..
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 222222 13345677777777777777777777777776654 335666667766677777777777777777766655
Q ss_pred hHHH---HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 540 TWTA---LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 540 ~~~~---li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
.||+ +...|.+.++++.|+-.|++..+ +.| +.+....+...+-+.|+.++|+.++++...- -+-++..--.-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 5444 45666777777777777777766 455 3555666666667777777777777766322 12233333344
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHhh
Q 005969 616 VDLLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
+..+...+++++|++.+++++ +.|+ ..++..+...|.+-|+...|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 555566677777777777774 4454 4445555566776676666643
No 49
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=9.2e-08 Score=96.90 Aligned_cols=541 Identities=12% Similarity=0.148 Sum_probs=277.0
Q ss_pred HhhHHHHhhccCChhHHHHhhccCCC--CCchh-----HHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHH
Q 005969 78 GTALLGLYGRHGCLDEVVSVFEDMPR--KSLVT-----WNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHG 150 (667)
Q Consensus 78 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 150 (667)
+..+.+.|.+.|-...|++.+..+.. +.+++ =.-++. |.-.-.++++.+++..|...+++.+..+..-+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56777888999999999998888754 11111 112233 33345688999999999998888877766555555
Q ss_pred hcccCchHHHHHHHHHHHHh-----------cCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---------------C
Q 005969 151 LSNEQDLEFGEQIHGLVIKN-----------GFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---------------I 204 (667)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~ 204 (667)
|...=-.+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-. -
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 54433344444555544321 356678888889999999999999988876542 0
Q ss_pred C---------Cchh-HHHHHHHHHccCChhHHHHHHHHhHhCCcCC-----------Chhh-------------HHHHHH
Q 005969 205 R---------DVVS-WNTIIGALAESENFGKALELYLRMSVDIVFP-----------NQTT-------------FVYVIN 250 (667)
Q Consensus 205 ~---------~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~t-------------~~~ll~ 250 (667)
+ |..- -+.++. |.-.++..+-+++|-+-..-+-.| +... -.-++.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvl-YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVL-YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred cccCceEEEecccccHHHHHH-HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 1 1111 111221 111222222222222211111111 1111 112333
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHH-
Q 005969 251 SCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIF- 328 (667)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~- 328 (667)
-+-+.+++..-...++.....|.. |..++++|...|...++-.+- +++ .|...-+..+..||...++- |.-
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLk----eN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLK----ENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcc----cCCcchhhHHhhhhcccCCceEEEe
Confidence 344455555566667777777765 888999999888876654321 111 11111122233333333222 110
Q ss_pred ------------------HHHHHHH-cCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC--cchhhhHHHHHHHHHhhC
Q 005969 329 ------------------LLIELLQ-LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY--ENYEYVLGSLMTSYAKSG 387 (667)
Q Consensus 329 ------------------~~~~m~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 387 (667)
+|+.... .--+.|...|..++.--.. -.-++.+.....++ ..|+.-.+.-++++...+
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~-~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENP-YRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccCh-HHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 0110000 0012333444433321100 01144444444444 346677778889999999
Q ss_pred CHHHHHHHHHhcCCCCCcchh-----HHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHH
Q 005969 388 LISDALAFVTALNIPRAVVPA-----NIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYM 462 (667)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 462 (667)
-+.+-.++++++-..++..+- +.++-...+ .+...+.+..+++..-|.. .+......++-+++|..+|++.
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHh
Confidence 999999999998444444332 222222222 2334444455544432221 1122333445566666666653
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHH
Q 005969 463 RAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWT 542 (667)
Q Consensus 463 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 542 (667)
. .+....+.||.- .+++++|.++-+++. .+..|..+..+-.+.|.+.+|.+-|-+.. |+..|.
T Consensus 1075 ~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~ 1137 (1666)
T KOG0985|consen 1075 D-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYL 1137 (1666)
T ss_pred c-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHH
Confidence 2 233333344332 233444443333221 33444445555555555555544443322 333444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCC--------------------------CCHhHHHHHHHHHhccCCHHHHHHHH
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFK--------------------------PDRVALIAVLTACRHGGLVREGMELF 596 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~--------------------------p~~~~~~~li~~~~~~g~~~~A~~~~ 596 (667)
.++....+.|.+++-.+++....+..-+ ||..-...+.+-|...|.++.|.-+|
T Consensus 1138 eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1138 EVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 4455555555555555544444443333 44444444444444444444444444
Q ss_pred HHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhh
Q 005969 597 ERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
... .-|..|...+...|.+..|.+...+. .+..||...-.+|.-.+.++.|+.
T Consensus 1218 ~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1218 SNV----------SNFAKLASTLVYLGEYQGAVDAARKA---NSTKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred HHh----------hhHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhchhhhhHHHh
Confidence 333 22555666666666666666555544 467899999999998888888764
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=4.8e-10 Score=98.56 Aligned_cols=251 Identities=12% Similarity=0.111 Sum_probs=187.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcch------hHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVP------ANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAH 448 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~ 448 (667)
+|.+.|.+.|.+|.|+.+-..+...|+... ...+..-|...|-++.|+.+|..+.+.. ....-.|+..|-.
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 788999999999999999998866665543 3456677888999999999999887633 3456678888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNY----TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIG 524 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 524 (667)
..+|++|+++-+++.+.|-++... .|.-+...+....+.+.|...+++..+.+ |.....--.+.+.+...|++.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchH
Confidence 999999999999988876555432 45566666677788999999999888875 335556667788889999999
Q ss_pred HHHHHHHhcCCCChh----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 525 SSVKIFNEMTDRNVI----TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 525 ~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.|.+.|+.+.+.|.. +...|..+|...|+.++....+.++.+. .++...-..+.+.-....-.+.|..++.+-.
T Consensus 232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 232 KAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 999999998865543 5667788999999999999999998885 4444444555554444455566666665443
Q ss_pred HhhCCCCCcchhHHHHHHHhh---cCChHHHHHHHHhC
Q 005969 601 RSYGVEPEMDHYHCVVDLLVR---YGHLKEAEKIITTM 635 (667)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m 635 (667)
+. +|+...+..|++.-.. .|...+....+.+|
T Consensus 310 ~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 310 RR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred hh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 44 7898888888887653 34455556666665
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9e-09 Score=95.90 Aligned_cols=409 Identities=13% Similarity=0.021 Sum_probs=207.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC-hhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCc-hHHHHHHHHHH
Q 005969 109 WNSIVSIFGKHGFVEDCMFLFCELVRSEVALT-ESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYE-LLVANSLVNMY 186 (667)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 186 (667)
+-...+-|-++|++++|++.+...++ ..|+ +..|+....+|...|+|+++.+--...++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 44455677889999999999999998 4588 7788889999999999999887766666543 33 45666667777
Q ss_pred HhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHH---------hHhC--CcCCChhhHHHHHHHhhcc
Q 005969 187 FQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLR---------MSVD--IVFPNQTTFVYVINSCAGL 255 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~ 255 (667)
-..|++++|+.- .+-.+++.++-...-..-+.+++++ |..+ -+-|+.....+....+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 778888877431 1222233333222222222222222 1211 1334444444433332210
Q ss_pred CChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh--cC---ChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHH
Q 005969 256 QNSILGKSIHAKVIKNALECDVFVGSALVDFYAK--CD---NLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFL 329 (667)
Q Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~ 329 (667)
- ......+.......+..++.. .+ .+..|.+.+.+-.. ..... ...+..+ -+
T Consensus 265 ~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~--~~~n~~d~~l-- 322 (606)
T KOG0547|consen 265 P------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESS--LSVNEIDAEL-- 322 (606)
T ss_pred c------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhh--ccccccchhH--
Confidence 0 000000011111111111110 00 12222222111000 00000 0001111 00
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcch
Q 005969 330 LIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVP 407 (667)
Q Consensus 330 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ 407 (667)
+.|.. ++. .....+.-.|+.-.|..-|+.. ..+.....
T Consensus 323 -e~~A~---------------al~------------------------~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l 362 (606)
T KOG0547|consen 323 -EYMAE---------------ALL------------------------LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL 362 (606)
T ss_pred -HHHHH---------------HHH------------------------HhhhhhhhcCCchhhhhhHHHHHhcCcccchH
Confidence 00100 000 0011122234444444444443 22222222
Q ss_pred hHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 005969 408 ANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSK 483 (667)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 483 (667)
|-.+...|....+.++.++.|....+ .++.+|..-.+.+.-.+++++|..=|++.++ +.|+ ...|.-+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 55555556666666666666655542 3445555555555566667777777776665 3332 3345455555556
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-------hhh--HHHHHHHHHhCC
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-------VIT--WTALISALGLNG 552 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-------~~~--~~~li~~~~~~~ 552 (667)
.+.++.+...|++.++. .|..+..|+.....+...++++.|.+.|+... +|. +.+ -..++ .+-..+
T Consensus 441 ~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhh
Confidence 66777777777776665 34456677777777777777777777776554 222 111 11111 111336
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 553 FAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 553 ~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
++..|++++++..+ +.|. ...|-.|...-.+.|+.++|+++|++.
T Consensus 518 d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 518 DINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777776 3554 346777777777777777777777765
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.8e-08 Score=93.29 Aligned_cols=354 Identities=9% Similarity=0.031 Sum_probs=198.6
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHH--HHH
Q 005969 172 FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFV--YVI 249 (667)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~--~ll 249 (667)
...|...+-.....+.+.|....|...|......-+..|.+.+.-.--..+.+.+..+.. |...|..-+. .+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 344555544555556677888888888887775555556555543333333333332221 2222222221 123
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCc------ccHHHHHHHHhcCCC
Q 005969 250 NSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNI------VSWNALILGYASKSS 323 (667)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~ 323 (667)
.++-...+.+++.+-.......|++.+...-+-...+.-...+++.|+.+|+++.+.|+ .+|+.++-. ++..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34555567788888888888888877777666666667778889999999998876433 334333311 1111
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCC
Q 005969 324 PTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPR 403 (667)
Q Consensus 324 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 403 (667)
.. +..+.. .++. -.+-
T Consensus 313 sk-Ls~LA~-------------------------------------------------------------~v~~--idKy 328 (559)
T KOG1155|consen 313 SK-LSYLAQ-------------------------------------------------------------NVSN--IDKY 328 (559)
T ss_pred HH-HHHHHH-------------------------------------------------------------HHHH--hccC
Confidence 11 000000 0000 0111
Q ss_pred CcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 404 AVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
.+.+...+.+-|...++.++|...|++..+.| ...|+.+.+-|....+...|.+-++..++-. +.|-..|-.|-++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 22233333344444444444444665555433 2446666666777777777777777776642 3455666677777
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 557 (667)
|.-.+...-|+-.|++..+.. |.|+..|.+|.+.|.+.++.++|.+.|..... -+...+..|.+.|-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 777777777777777766653 55677777777777777777777777776552 3335666777777777777777
Q ss_pred HHHHHHHHH----cCCCCC-H-hHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 558 LEKFREMEF----LGFKPD-R-VALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 558 ~~~~~~~~~----~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
...|++-++ .|..-+ . ...--|..-+.+.+++++|-.+....
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 776666544 222222 1 12222444556666666666655444
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=3.6e-09 Score=96.29 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=215.9
Q ss_pred hhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC----CcchHHHHHHHHHHcCChhHHHHH
Q 005969 385 KSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP----DIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 385 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
..|++..|+++..+. ..+.....|..-+++-.+.|+.+.+-.++.+..++ +...+-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 368999999998877 33344455566667778889999999999888753 334455566677889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch-------hHHhHHHHHHHhcCChHHHHHHHH
Q 005969 459 FKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT-------FVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
+.++.+.+ +-+........++|.+.|++.....++..+.+.+... +. .+|+.+++-....+..+.-...|+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99998865 4456778888999999999999999999999998765 43 366677776666667777677888
Q ss_pred hcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 005969 532 EMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE 608 (667)
Q Consensus 532 ~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (667)
... +.++..-.+++.-+...|+.++|.++..+..+.+..|.. ...-.+.+-++...-.+..+...+..+..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 776 346677778888899999999999999999998777761 122345677888888888887756644444
Q ss_pred cchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 609 MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|.-+-.++...|+.+.|..+.+.
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 78899999999999999999999976 5899999999999999999999999877653
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.9e-12 Score=81.94 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 536 RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 536 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998875
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=7.5e-09 Score=94.23 Aligned_cols=290 Identities=13% Similarity=0.028 Sum_probs=182.4
Q ss_pred ccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 005969 219 ESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHL 298 (667)
Q Consensus 219 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 298 (667)
..|+|..|.++..+-.+.+-.| ...|..-.++.-..|+.+.+-..+.+..+....++..++-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3566666666666655544333 233444455556666777777777666666555555666666666677777777766
Q ss_pred HHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhh
Q 005969 299 CFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEY 374 (667)
Q Consensus 299 ~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (667)
-+++..+ .++.........|.+.|++. ...++.+|.+.|+-.|...-.. ...
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~ 230 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQ 230 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHH
Confidence 6555433 45566666777777777777 7777777777766555432210 001
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCC
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGD 451 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~ 451 (667)
++..+++-....+..+.-.. .++..+ +.++..-.+++.-+.+.|+
T Consensus 231 a~~glL~q~~~~~~~~gL~~--------------------------------~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKT--------------------------------WWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HHHHHHHHHhccccchHHHH--------------------------------HHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 11233333333333333333 444444 3456666777888888999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
.++|.++..+..+++..|+..+ .-.+.+.++.+.-.+..+...+.. |.++..+.+|...|.+.+.|.+|...|+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998888876666221 223556677777777776666554 3356778888888888888888888887
Q ss_pred hcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 005969 532 EMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP 571 (667)
Q Consensus 532 ~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p 571 (667)
... +|+..+|+.+..++.+.|+..+|.+..++....-.+|
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 655 5777788888888888888888877777766443333
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=4.6e-10 Score=108.64 Aligned_cols=188 Identities=10% Similarity=0.101 Sum_probs=104.3
Q ss_pred CcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH---HH
Q 005969 404 AVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFV---SL 477 (667)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l 477 (667)
++.+|..+.++|.-+++.+.|++.|++..+.| ..+|+.+..-+.....+|.|...|+.... .|...|+ -+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhh
Confidence 33344444444444444444444555544322 23444444444555555566555555532 2333222 33
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCCh
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFA 554 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~ 554 (667)
...|.+.++.+.|+-.|+++.+-+ |.+......+...+.+.|+.++|++++++.. + .|+..--..+..+...++.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 444566666666666666665554 3355555666666666666666666666654 2 2443333445555666777
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 555 QRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|--+
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 777777777777 3554 445666666777777777777766655
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.7e-09 Score=95.29 Aligned_cols=267 Identities=11% Similarity=0.071 Sum_probs=206.2
Q ss_pred hhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-CCcch------HHHHHHHHHHcCChhHH
Q 005969 385 KSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-PDIVS------WNIVIAACAHNGDYKEV 455 (667)
Q Consensus 385 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~li~~~~~~g~~~~A 455 (667)
-+++.++|.+.|-++ ..+.+..+--++.+.|.+.|..+.|+.+-+.+.+ ||... .-.|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357899999999998 6777777888899999999999999999998775 54432 33456668889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc---hhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 456 LELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD---TFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 456 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
+.+|..+.+.| .--......|+..|-...+|++|.+.-+++.+.+..+.. ...|..|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998865 344567888999999999999999999999888754422 23566677777788899999999998
Q ss_pred cCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 533 MTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 533 ~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
..+. .+..--.+.+.....|+++.|++.|+...+.+..--+.+...|..+|...|+.++...++.++.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 8743 334444567888999999999999999999743334668899999999999999999999998654 4444
Q ss_pred chhHHHHHHHhhcCChHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcC
Q 005969 610 DHYHCVVDLLVRYGHLKEAEK-IITTMPFPPNALIWRTFLEGCQRCR 655 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~l~~~~~~~~ 655 (667)
..-..+.+.-....-.+.|.. +.+.+.-+|+...++.|+..-....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 444444444433333455555 4455667899999999988755443
No 58
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=1.4e-07 Score=92.50 Aligned_cols=368 Identities=13% Similarity=0.072 Sum_probs=212.1
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV-TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE 158 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 158 (667)
.-|.+|....++++|+.+-+....|... .-.+.++++...|+-++|-++-+. .-.-.+.|+.|.+.|...
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---------dgd~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES---------DGDGLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc---------cCccHHHHHHHHHcCCch
Confidence 3456666677777777777665555322 223345555556666665543211 111123455555555555
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 159 FGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
.|...... ...+..|......+..++++..-+++|-.+|+++..++- .+..|-+..-+.+|+++-+-. .
T Consensus 633 ~a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa----f 701 (1636)
T KOG3616|consen 633 KAARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA----F 701 (1636)
T ss_pred HHHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh----C
Confidence 44433211 111223444444444445554445555555555443221 122222222233444332211 0
Q ss_pred CCChhhHHHHH-HHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCc--ccHHHHH
Q 005969 239 FPNQTTFVYVI-NSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNI--VSWNALI 315 (667)
Q Consensus 239 ~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li 315 (667)
+....+....- ..+...|+++.|..-|-+... ...-+.+......|.+|..+++.+.+.++ ..|..+.
T Consensus 702 p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~ia 772 (1636)
T KOG3616|consen 702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIA 772 (1636)
T ss_pred cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHH
Confidence 00000000000 001222333333322222110 11234455566778888888887776544 3467777
Q ss_pred HHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHH
Q 005969 316 LGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALA 394 (667)
Q Consensus 316 ~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 394 (667)
..|+..|+++ |.++|.+.- .++-.+.+|.+.|++++|.+
T Consensus 773 dhyan~~dfe~ae~lf~e~~----------------------------------------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD----------------------------------------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc----------------------------------------hhHHHHHHHhccccHHHHHH
Confidence 7888888888 777776521 12367889999999999999
Q ss_pred HHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 005969 395 FVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473 (667)
Q Consensus 395 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 473 (667)
+-.+. +.......|..-..-+-+.|++.+|+.++-.+..|+. .|..|-+.|..+..+++..+-.- ..-..|
T Consensus 813 la~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt 884 (1636)
T KOG3616|consen 813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDT 884 (1636)
T ss_pred HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHH
Confidence 88887 6666777788888889999999999999999888875 47889999999999888776422 112346
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
...+..-+-..|++..|..-|-+.. -|.+-+++|-..+.|++|.++-+.-.
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 6677777888899988887765433 34456777888888888888776544
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6.1e-12 Score=81.86 Aligned_cols=50 Identities=38% Similarity=0.737 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK 483 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 483 (667)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.2e-09 Score=97.74 Aligned_cols=480 Identities=11% Similarity=0.041 Sum_probs=241.0
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhcc--CCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFED--MPRKSLVTWNSIVSIFGKHGFVEDCMFLFCE 131 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 131 (667)
.+..|.-+-+++...+ .|+...-.+++.+.-.|..+.|..+++. +...+..+.......+.+..++++|..++..
T Consensus 31 ~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred hhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555556555544 4444445667778888888888887765 3456777888888888888999999888873
Q ss_pred HHHC--CCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchh
Q 005969 132 LVRS--EVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVS 209 (667)
Q Consensus 132 m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 209 (667)
-... ++.-++.+ . .... +.+.+. ++ .++......+-.-...|......++|...|.+...-|+..
T Consensus 108 ~~~~~~~f~yy~~~--~-~~~l----~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c 174 (611)
T KOG1173|consen 108 GHVETNPFSYYEKD--A-ANTL----ELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKC 174 (611)
T ss_pred cchhhcchhhcchh--h-hcee----ccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhh
Confidence 2100 00000000 0 0000 000000 00 0011111111111223444455556666665555445554
Q ss_pred HHHHHHHHHccC-ChhHHHHHHHHhHhC-CcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 005969 210 WNTIIGALAESE-NFGKALELYLRMSVD-IVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFY 287 (667)
Q Consensus 210 ~~~li~~~~~~~-~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (667)
|..+...-...= ...+-+++|..+.-. -.+-+......+.........-+.....-.+..-.+..-+..+...-.+-+
T Consensus 175 ~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~ 254 (611)
T KOG1173|consen 175 FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRL 254 (611)
T ss_pred HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHH
Confidence 444332111100 011122222211000 001111111111111100000000000000011112233444444555556
Q ss_pred HhcCChHHHHHHHhccCCCC---cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHH
Q 005969 288 AKCDNLEGAHLCFSEISNKN---IVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCL 363 (667)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 363 (667)
...+++.+..++++.+.+.+ ...+..-|..+...|+.. -..+=.+|+..
T Consensus 255 y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--------------------------- 307 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--------------------------- 307 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---------------------------
Confidence 66667777777766665522 233333344444444443 22222333332
Q ss_pred HHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHH
Q 005969 364 IIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWN 440 (667)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 440 (667)
-|....+|-.+.--|...|+..+|.+.|.+....| ...|-
T Consensus 308 -------------------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 308 -------------------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred -------------------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 22233333333333333344444444555544322 24566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 520 (667)
.+...|+-.|..++|+..+...-+. ++-...-+--+---|.+.++.+.|.++|...... .|.|+...+.+.-.....
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTY 427 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehH
Confidence 6667777777777777777665542 1111112222333466777778888877776654 466777777777777777
Q ss_pred CChHHHHHHHHhcCC---------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 521 GSIGSSVKIFNEMTD---------R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 521 ~~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
+.+.+|..+|+.... + ...+++.|..+|.+.+.+++|+..+++.... .+-+..++.++.-.|...|+++
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChH
Confidence 777777777776551 1 2345777778888888888888888887775 2446677777777777888888
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHh
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (667)
.|.+.|.+. ..+.|+-.+-..++..+.
T Consensus 507 ~Aid~fhKa---L~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 507 KAIDHFHKA---LALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHH---HhcCCccHHHHHHHHHHH
Confidence 888887744 356777766665555443
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.6e-08 Score=94.72 Aligned_cols=281 Identities=12% Similarity=0.062 Sum_probs=222.9
Q ss_pred cCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHH
Q 005969 368 GYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIV 442 (667)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 442 (667)
+..-++.+.....+-+...+++.+..++.+.. ..|+....+..-+.++...|+..+-..+=.++.+ ....+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 45556666677788888999999999999988 7888888888888899999988777666666663 345789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
.--|...|+..+|.+.|.+... +.|. ...|-.+...|+-.+.-++|...+..+.+.= +....-+--+..-|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhc
Confidence 9899999999999999998765 3333 2467777888999999999999988877752 112222333556788899
Q ss_pred ChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC----CHhHHHHHHHHHhccCCHHHH
Q 005969 522 SIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFL--GFKP----DRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 522 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p----~~~~~~~li~~~~~~g~~~~A 592 (667)
..+-|.+.|.... .| |+...+-+.-..-..+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999999876 34 6677887777777788999999999887731 0111 344788999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~ 654 (667)
+..+++.... .+.+..++.++.-.|...|+++.|.+.|.+. .+.|+..+-..++..+...
T Consensus 475 I~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999998554 6778889999999999999999999999887 4899998888888766544
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=4.4e-06 Score=81.19 Aligned_cols=529 Identities=12% Similarity=0.102 Sum_probs=305.4
Q ss_pred hhhHHHHHHHHHhCCC--CCChhHHhhHHHHhhccCChhHHHHhhccCCC-----CCchhHHHHHHHHHhCCChHHHHHH
Q 005969 56 VEGAQLQASVLKNGLF--CADAFVGTALLGLYGRHGCLDEVVSVFEDMPR-----KSLVTWNSIVSIFGKHGFVEDCMFL 128 (667)
Q Consensus 56 ~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 128 (667)
+.+-..++...+...+ .--+.+|...++.+.++|++...+.+|+.... .....|...+......|-++-++.+
T Consensus 81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 3344444444443311 24456778888889999999999999887542 3556888888888889999999999
Q ss_pred HHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhc------CCCchHHHHHHHHHHHhcCC---hhHHHHhh
Q 005969 129 FCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNG------FDYELLVANSLVNMYFQCAG---IWSAEKMF 199 (667)
Q Consensus 129 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 199 (667)
+++.++ .++..-..-|..++..+++++|.+.+..+.... .+.+-..|+-+-+..++..+ --...+++
T Consensus 161 yrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999977 444557788888999999999999988876432 23445566666665555433 22345555
Q ss_pred ccCCC--CC--chhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCC------------------
Q 005969 200 KDVEI--RD--VVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQN------------------ 257 (667)
Q Consensus 200 ~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------------------ 257 (667)
+.+.. +| -..|++|...|.+.|.+++|.++|++-.+. ..+..-|..+..+|+.-..
T Consensus 237 R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 237 RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 55543 23 347999999999999999999999987765 2333344444444432111
Q ss_pred ----hhHHHHHHHHHHHhcCC----------C-CchHHHHHHHHHHhcCChHHHHHHHhccCC---C------CcccHHH
Q 005969 258 ----SILGKSIHAKVIKNALE----------C-DVFVGSALVDFYAKCDNLEGAHLCFSEISN---K------NIVSWNA 313 (667)
Q Consensus 258 ----~~~a~~~~~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~ 313 (667)
++....-|+.+...... | ++..|..-+. +..|+..+-...+.+... | --..|..
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 11111222222221100 0 0011111110 111222222222222211 0 0112344
Q ss_pred HHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHH
Q 005969 314 LILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDA 392 (667)
Q Consensus 314 li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 392 (667)
+.+-|-.+|+.+ |..+|++..+...+--... ..+|..-..+-.+..+++.|
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dL----------------------------a~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDL----------------------------AEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHH----------------------------HHHHHHHHHHHHhhhhHHHH
Confidence 444444555555 5555544333221111000 12233344555566777888
Q ss_pred HHHHHhcCCCCCc--------------------chhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHH---HHHHc
Q 005969 393 LAFVTALNIPRAV--------------------VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIA---ACAHN 449 (667)
Q Consensus 393 ~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~ 449 (667)
+++++....-|.. ..+...++.....|-++....+++++.+..+.|=.++++ .+-.+
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8887776222221 123445555555677777777888777543333222222 22234
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH----hcC
Q 005969 450 GDYKEVLELFKYMRAARIYPDN-YTFVSLLSACSK---LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG----KCG 521 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 521 (667)
.-++++.+++++=+..--.|+. ..|+..+.-+.+ ...++.|..+|+++.+ + .||. ....+.-.|+ +-|
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~-Cpp~--~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G-CPPE--HAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CCHH--HHHHHHHHHHHHHHHhh
Confidence 4567777777765544334554 356665555433 3578999999999998 3 3432 2222333333 447
Q ss_pred ChHHHHHHHHhcCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHhccCCHHHHH
Q 005969 522 SIGSSVKIFNEMTDR-----NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIA---VLTACRHGGLVREGM 593 (667)
Q Consensus 522 ~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~ 593 (667)
-...|.+++++.... -...||+.|.--...=-+....++|++.++. -|+...-.. ..+.=++.|..+.|.
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 788899999987631 2357888876655544466677888888884 676554333 344457889999999
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 594 ELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
.++....+-..-..+...|.+.-..=.+.|+-+
T Consensus 679 aIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 679 AIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 999887443233334456777777778888843
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2e-06 Score=84.57 Aligned_cols=519 Identities=13% Similarity=0.062 Sum_probs=289.3
Q ss_pred HhhccCChhHHHHhhccCCCCCch--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPRKSLV--TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGE 161 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 161 (667)
+-.....+.+|+.+++.+..++.. -|..+..-|+..|+++.|.++|.+. ..++-.|..|.+.|.|+.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 334557788888888888765443 4777888999999999999998653 23566788899999999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCC
Q 005969 162 QIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPN 241 (667)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 241 (667)
++-+.. .|.+.....|-+-..-.-+.|++.+|++++-.+..|+.. |..|-+.|..++.+++..+-....+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~l--- 881 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDHL--- 881 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhhh---
Confidence 886654 344555666777777778899999999999988888753 6778889999999888876432211
Q ss_pred hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCccc-----------
Q 005969 242 QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVS----------- 310 (667)
Q Consensus 242 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------- 310 (667)
..|-..+-.-+-..|++..|+.-|-+..+ |.+-+++|-..+-|++|.++-+.-...|..-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 23444555556777888877765544332 3455666666777777766654332211110
Q ss_pred -------------HHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh------------------
Q 005969 311 -------------WNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL------------------ 358 (667)
Q Consensus 311 -------------~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~------------------ 358 (667)
...-+...+.++.++ |.++-+-..+.....-...+...+. ..+.+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~le---degk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLE---DEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhh---hccchhhhhHhhHHHhhcccccc
Confidence 001111122333333 3332221111111000111111111 01111
Q ss_pred --------HHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhc
Q 005969 359 --------QLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQ 430 (667)
Q Consensus 359 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (667)
.+-....+.|-+|. ..+.++.+.+++..|.++-+.-....-...+.--.+.....|++.+|+.++-+
T Consensus 1030 twcqavpsrfd~e~ir~gnkpe-----~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllr 1104 (1636)
T KOG3616|consen 1030 TWCQAVPSRFDAEFIRAGNKPE-----EAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLR 1104 (1636)
T ss_pred hhhhcccchhhHHHHHcCCChH-----HHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheee
Confidence 12223334444554 23455666777777776655432222222333334445567788888888888
Q ss_pred CCCCCcchHHHHHHHHHHcCChhHHHHHHHHHH----------------HcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 005969 431 LERPDIVSWNIVIAACAHNGDYKEVLELFKYMR----------------AARIYPDNYTFVSLLSACSKLCNLALGSSLH 494 (667)
Q Consensus 431 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 494 (667)
..+|+. .++.|...+-+..|+++-+... +.| ......|..-.+-+-+.|++.+|...+
T Consensus 1105 ankp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~ 1178 (1636)
T KOG3616|consen 1105 ANKPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDAL 1178 (1636)
T ss_pred cCCCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHH
Confidence 777875 3455666677777666644321 122 223344555555666777777776665
Q ss_pred HHHHHhC--------------------CCCCch--hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCC
Q 005969 495 GLIKKTE--------------------IISSDT--FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNG 552 (667)
Q Consensus 495 ~~~~~~~--------------------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 552 (667)
-++-+.. +.+++. ....+...++...|..+.|.+++-... .-...|.++|+..
T Consensus 1179 lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~-----~~keaida~~~~e 1253 (1636)
T KOG3616|consen 1179 LKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD-----LSKEAIDAFCEAE 1253 (1636)
T ss_pred hhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh-----hHHHHHHHHHhHH
Confidence 5543221 011111 222222222333333333333322111 1123467777777
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HhHH------------------HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 553 FAQRALEKFREMEFLGFKPD-RVAL------------------IAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 553 ~~~~A~~~~~~~~~~g~~p~-~~~~------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
.+.+|.++-+++.-. ..|. ...| -..|..+...++|++|+..-. ++ +++|-..-|.
T Consensus 1254 ewakakqvake~~p~-~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak---~q-nykpil~kyv 1328 (1636)
T KOG3616|consen 1254 EWAKAKQVAKELDPE-MEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAK---KQ-NYKPILDKYV 1328 (1636)
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHH---hc-ccHHHHHHHH
Confidence 777777776664321 1111 1122 134455666677776665432 23 6777666665
Q ss_pred HH-HHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhc
Q 005969 614 CV-VDLLVRYGHLKEAEKIITTMP---FPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 614 ~l-~~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~l~~~~~~~ 654 (667)
.+ ...+.+.|+..+|+.++++-+ .+.+...|..++.-....
T Consensus 1329 a~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lak 1373 (1636)
T KOG3616|consen 1329 ALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAK 1373 (1636)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcC
Confidence 54 344678888888888888885 233455666666554443
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=5.4e-06 Score=80.78 Aligned_cols=539 Identities=13% Similarity=0.057 Sum_probs=267.6
Q ss_pred hhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHH
Q 005969 85 YGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGE 161 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 161 (667)
+...|+-++|......-.+ .+.++|+.+.-.+....++++|+++|......+ +-|...+.-+--.-++.|+++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3444555555555544332 344556655555555566666666666665533 123333333333334455555555
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC-----CCchhHHHH------HHHHHccCChhHHHHHH
Q 005969 162 QIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-----RDVVSWNTI------IGALAESENFGKALELY 230 (667)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~~~~~~a~~~~ 230 (667)
.....+.+.. +.....|.....++.-.|+...|..+.+...+ ++...|... ...+.+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5444444432 12233455555555555666655555544331 222222111 12344556666666655
Q ss_pred HHhHhCCcCCChhhH-HHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHH-HHHHHHHHhcCChHHHH-HHHhccCC--
Q 005969 231 LRMSVDIVFPNQTTF-VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVG-SALVDFYAKCDNLEGAH-LCFSEISN-- 305 (667)
Q Consensus 231 ~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~-~~~~~~~~-- 305 (667)
..-... ..|...| .+-...+.+.+++++|..++..+.... ||...| -.+..++.+-.+..++. .+|....+
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 443221 1122222 122223455666666666666666553 333333 33333333222222222 44444433
Q ss_pred CCcccHHHHHHHHhcCCC-hH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhh-----HHHHHHHHhcC---------
Q 005969 306 KNIVSWNALILGYASKSS-PT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLL-----QLHCLIIRMGY--------- 369 (667)
Q Consensus 306 ~~~~~~~~li~~~~~~~~-~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~--------- 369 (667)
|-...-..+-........ .+ .-..+..+.+.|+++--..+.++.+--....-+ .....+...|.
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 100000000001111112 22 334566677777776655555555432211111 11111111111
Q ss_pred -cchhhh--HHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHH
Q 005969 370 -ENYEYV--LGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNI 441 (667)
Q Consensus 370 -~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 441 (667)
+|++.. +-.++..+-+.|+++.|...++.. ..|.-+..|..-.+.+...|.+++|..++++..+.|. ..=.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 334333 345677888999999999999887 4444466677788899999999999999998886333 22224
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH----------HHHHhccCChhhHHHHHHHHHH-------hCCC-
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL----------LSACSKLCNLALGSSLHGLIKK-------TEII- 503 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------l~~~~~~~~~~~a~~~~~~~~~-------~~~~- 503 (667)
-..-..++++.++|..+....-..|. +....-.- ..+|.+.+++..|..-|..+.+ ....
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDf 522 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDF 522 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhH
Confidence 55566778999999999888887774 22211111 2346666676666544433322 2110
Q ss_pred ------CCchhHHhHHHHHHHhcCC-------hHHHHHHHHhcC-CCChh-----hHHH----HHHHHHhC-CChHHHHH
Q 005969 504 ------SSDTFVCNMLIDMYGKCGS-------IGSSVKIFNEMT-DRNVI-----TWTA----LISALGLN-GFAQRALE 559 (667)
Q Consensus 504 ------~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~-~~~~~-----~~~~----li~~~~~~-~~~~~A~~ 559 (667)
.-+..+|--|+...-...+ ...|.+++-.|. .|+.. .... .-....+. .+-.+|.+
T Consensus 523 htyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~ 602 (700)
T KOG1156|consen 523 HTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKK 602 (700)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 0023344444433222211 123455555444 23211 0111 11111111 11222222
Q ss_pred HHHHHHH---------cCCC--CCHhHHHHHHHHHhccCC-HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHH
Q 005969 560 KFREMEF---------LGFK--PDRVALIAVLTACRHGGL-VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 560 ~~~~~~~---------~g~~--p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 627 (667)
.-..+.+ .|.+ ||.. .+...+.+..+ .++|.+++..+ .. ..+-+..+|-.-...|.|.|.+.-
T Consensus 603 e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l-~~-~~~~~~~~~iL~~ely~rk~k~~l 677 (700)
T KOG1156|consen 603 EAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNL-QH-KGKEKGETYILSFELYYRKGKFLL 677 (700)
T ss_pred HHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHH-HH-hcccchhhhhhhHHHHHHHHHHHH
Confidence 2222211 1322 4443 45556666555 57788888887 34 356677788777889999999999
Q ss_pred HHHHHHhCC
Q 005969 628 AEKIITTMP 636 (667)
Q Consensus 628 A~~~~~~m~ 636 (667)
|.+.+++..
T Consensus 678 ~~~~~~~~~ 686 (700)
T KOG1156|consen 678 ALACLNNAE 686 (700)
T ss_pred HHHHHHhhh
Confidence 999888873
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=9.3e-06 Score=83.01 Aligned_cols=604 Identities=13% Similarity=0.116 Sum_probs=317.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
.++..|+..|.+++++-. ..+.|.+||...+ ++ ..+.+++.+.+....+.... +.....+.+...+...+
T Consensus 486 KVi~cfAE~Gqf~KiilY---~kKvGyTPdymfl---Lq~l~r~sPD~~~qFa~~l~Q~~---~~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILY---AKKVGYTPDYMFL---LQQLKRSSPDQALQFAMMLVQDE---EPLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHHhcchhHHHHH---HHHcCCCccHHHH---HHHHHccChhHHHHHHHHhhccC---CCcccHHHHHHHHHHHH
Confidence 345555555555554432 3456788876544 33 33456777777777666644 12222233334444444
Q ss_pred ChhHHHHhhccCCC---------------------C------------CchhHHHHHHHHHhCCChHHHHHHHHHHHHC-
Q 005969 90 CLDEVVSVFEDMPR---------------------K------------SLVTWNSIVSIFGKHGFVEDCMFLFCELVRS- 135 (667)
Q Consensus 90 ~~~~a~~~~~~~~~---------------------~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 135 (667)
....+..++-...+ | +..-+..+.+.|.++|-..+|++.+..+..-
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK 636 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK 636 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH
Confidence 44443333322111 1 1123566778888999999999888776421
Q ss_pred -CCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC----------
Q 005969 136 -EVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI---------- 204 (667)
Q Consensus 136 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 204 (667)
-+......=-.-+-.+...-.++.+.+.+..|...++..+..+.-.+..-|...=..+...++|+....
T Consensus 637 R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgS 716 (1666)
T KOG0985|consen 637 RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGS 716 (1666)
T ss_pred HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHH
Confidence 000000000001223333446788899999999999888888877777777777667777777777652
Q ss_pred -----CCchhHHHHHHHHHccCChhHHHHHHHHh------------HhCCc--------CCChhhHHHHHHHhhccCChh
Q 005969 205 -----RDVVSWNTIIGALAESENFGKALELYLRM------------SVDIV--------FPNQTTFVYVINSCAGLQNSI 259 (667)
Q Consensus 205 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m------------~~~g~--------~p~~~t~~~ll~~~~~~~~~~ 259 (667)
.|....--.|.+.++.|++.+..++-++- ++... .-|.+.|..=+-.|.-.++..
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ 796 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ 796 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHH
Confidence 34444556677888888888777664431 00000 001111111111111111111
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCC
Q 005969 260 LGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGY 338 (667)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~ 338 (667)
+-.+++-+ +.++.-.+.+...|++ ....++..+-+-.. -+....-+-|..-.-+.++.. -+.+++...+.|.
T Consensus 797 kyIE~yVQ--kvNps~~p~VvG~LLD----~dC~E~~ik~Li~~-v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 797 KYIEIYVQ--KVNPSRTPQVVGALLD----VDCSEDFIKNLILS-VRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHHHHHh--hcCCcccchhhhhhhc----CCCcHHHHHHHHHH-HhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 11111111 0111111112222221 11111111100000 011112222333333444444 4444555555443
Q ss_pred CCCHhhHHHHHHHhhhhhhh--------------HHHHHHHHh-------------------cCcchhhhHHHHHHHHHh
Q 005969 339 RPNEFTFSHVLRSSLAFQLL--------------QLHCLIIRM-------------------GYENYEYVLGSLMTSYAK 385 (667)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~ 385 (667)
.|..|++++-+-+.....- .+-+...++ ++....+.|....+-+.+
T Consensus 870 -~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~ 948 (1666)
T KOG0985|consen 870 -QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVE 948 (1666)
T ss_pred -cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHh
Confidence 2444555444332211111 000011111 111122334444444455
Q ss_pred hCCHHHHHHHHHhc----------------CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-CCCc-----chHHHHH
Q 005969 386 SGLISDALAFVTAL----------------NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-RPDI-----VSWNIVI 443 (667)
Q Consensus 386 ~~~~~~a~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~-----~~~~~li 443 (667)
..+.+--.+++.+- ....++........++...+-..+-+++++++. ++++ ..-|.|+
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI 1028 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH
Confidence 55554444443221 122344445566667777777777777777765 3322 2234444
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
-...+. +..++++..+++-.-. .|+ +...+...+-.++|..+|++... +....+.|+. .-+..
T Consensus 1029 LtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~------n~~A~~VLie---~i~~l 1091 (1666)
T KOG0985|consen 1029 LTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM------NVSAIQVLIE---NIGSL 1091 (1666)
T ss_pred HHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc------cHHHHHHHHH---HhhhH
Confidence 443333 3455566666554322 222 22334556667888888876532 4445555554 34678
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh
Q 005969 524 GSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (667)
+.|.+.-++..+|. .|+.+..+-.+.|.+.+|++-|-+ .-|+..|.-+++...+.|.|++-..++... ++.
T Consensus 1092 dRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk 1162 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKK 1162 (1666)
T ss_pred HHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHh
Confidence 88888888887764 588899999999999999887654 346789999999999999999999999877 554
Q ss_pred CCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhhh
Q 005969 604 GVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
.-.|... ..|+-+|++.++..+-++++. -|+......+..-|.-.|..+-|+..
T Consensus 1163 ~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1163 VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 5555554 578999999999888766653 35555555555556666655555443
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.2e-08 Score=93.88 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=149.3
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.+.|.+.++...+.. |.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 3456677788888899999999988887653 3345677777888888899999999988888765 335677778888
Q ss_pred HHHhcCChHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD-----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
.+...|++++|.+.++...+ .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 88888999999988888763 123466667788888899999999999888752 224567788888888899999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|...+++.... .+.+...+..+...+...|+.++|.++.+.+
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988444 3445566777788888888999888887765
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=4.4e-08 Score=87.47 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=61.3
Q ss_pred HhhccCChhHHHHhhccCCC---CCchhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPR---KSLVTWNS-IVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEF 159 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 159 (667)
-+....++..|+.+++.-.. ......+. +...+-..|++++|...+..+.+.. .|+......|.....-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34445566666666554322 11111111 2223344566666666666555432 2344444444444444555555
Q ss_pred HHHHHHHHHHhcCCCchHHH-HHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 160 GEQIHGLVIKNGFDYELLVA-NSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
|.++-... |+.... ..|++...+.|+-++-..+-+.+... ..---++.......-.+.+|+++|.+....
T Consensus 110 A~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 110 AKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55544332 222222 23333334444444443333333211 111112222222333455666666665543
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=1.3e-08 Score=93.77 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=145.0
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 485 (667)
..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 3344455555555555556655432 234566777888888999999999999888754 345567777888888999
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
++++|.+.++...+....+.....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...++
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887543333556777788889999999999999988763 3 45678888899999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 563 EMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 563 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+..+. .+.+...+..+...+...|+.++|..+++.+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 194 RYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99886 34456677788888889999999999988873
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.3e-06 Score=81.25 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=103.9
Q ss_pred hHHHHHHhcCCCCC-cchHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChhhHHHHHH-
Q 005969 422 NETVKLLSQLERPD-IVSWNIVIAACAH--NGDYKEVLELFKYMRAARIYPD--NYTFVSLLSACSKLCNLALGSSLHG- 495 (667)
Q Consensus 422 ~~a~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~- 495 (667)
+.+.++-....... ...+.+++....+ ......|..++...-+. .|. ....-.++......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33333444444322 2334444443322 22456666666666553 233 3344455566677888888888877
Q ss_pred -------HHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC------CChh----hHHHHHHHHHhCCChHHHH
Q 005969 496 -------LIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD------RNVI----TWTALISALGLNGFAQRAL 558 (667)
Q Consensus 496 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~----~~~~li~~~~~~~~~~~A~ 558 (667)
.+.+.+. .+.+..+++..|.+.++.+.|..++.+..+ +... ++.-+...-.+.|+.++|.
T Consensus 402 ~~~~~~ss~~~~~~---~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSILEAKH---LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhhhhcc---ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 3444332 456677778888888877777777766542 2222 3333344445678999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.+++++.+.. ++|..+...++.+|++. +++.|..+-..+
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999998852 56777888888888876 567777775544
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.8e-06 Score=81.75 Aligned_cols=450 Identities=13% Similarity=0.025 Sum_probs=223.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHH--HHH--HHh
Q 005969 113 VSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSL--VNM--YFQ 188 (667)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~--~~~ 188 (667)
++-+...|++++|....+++...+ +-+...+..-+-++.+.+.++.|..+.+.-.. ..+++.. =.+ ..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 455666777888888888777654 44455566666677777777777744432211 0111111 222 335
Q ss_pred cCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH-hhccCChhHHHHHHHH
Q 005969 189 CAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS-CAGLQNSILGKSIHAK 267 (667)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~ 267 (667)
.+..++|...++....-|......-...+.+.|++++|+++|+.+..++..- +...+++ |...+....+ +.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd----~d~~~r~nl~a~~a~l~~----~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD----QDEERRANLLAVAAALQV----QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHhhhH----HH
Confidence 6667777776664444444444444556666677777777777665553221 1111111 0000000000 01
Q ss_pred HHHhcCCCCchHHHHH---HHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCC--CH
Q 005969 268 VIKNALECDVFVGSAL---VDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQLGYRP--NE 342 (667)
Q Consensus 268 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~--~~ 342 (667)
+......| ..+|..+ ...++..|++.+|+++++.... +-.+-...+-.- +.
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~-----------------------~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALR-----------------------ICREKLEDEDTNEEEI 219 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----------------------HHHHhhcccccchhhH
Confidence 11111111 1122222 2233345555555555443210 000000000000 00
Q ss_pred hhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhh---
Q 005969 343 FTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNR--- 417 (667)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~--- 417 (667)
..-...++ -.+...+-..|+.++|.++|... ..+++........+-+..
T Consensus 220 e~el~~Ir--------------------------vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~ 273 (652)
T KOG2376|consen 220 EEELNPIR--------------------------VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSK 273 (652)
T ss_pred HHHHHHHH--------------------------HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcc
Confidence 00000010 14555677889999999999887 455555444333332221
Q ss_pred cCChh--HHHHHHhcCCCCCc--------------chHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 418 TGQYN--ETVKLLSQLERPDI--------------VSWN-IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 418 ~~~~~--~a~~~~~~~~~~~~--------------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
..++- .+...++....... ...| .++..|. +..+.+.++-.... +..|. ..+..++..
T Consensus 274 d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~ 348 (652)
T KOG2376|consen 274 DQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQE 348 (652)
T ss_pred ccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHH
Confidence 11111 12222222221111 1111 1222221 11222222221111 12233 334444444
Q ss_pred Hhc--cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH--------hcCC--CChhhHHHHHHHH
Q 005969 481 CSK--LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN--------EMTD--RNVITWTALISAL 548 (667)
Q Consensus 481 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~--~~~~~~~~li~~~ 548 (667)
+.+ ......+.+++....+..... .....-..+......|+++.|.+++. .+.+ ..+.+...+...+
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~~p~~-s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~ 427 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADGHPEK-SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALY 427 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCCch-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHH
Confidence 332 224566677777666654222 34556667788888999999999988 3332 2334555566666
Q ss_pred HhCCChHHHHHHHHHHHHc--CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 549 GLNGFAQRALEKFREMEFL--GFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
.+.++.+.|..++.+.... .-.+. ..++..+...-.+.|.-++|..+++++.+. .++|..+...++.+|++.
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc
Confidence 7777766666666665431 01122 224444555556779999999999999654 578888999999999876
Q ss_pred CChHHHHHHHHhCC
Q 005969 623 GHLKEAEKIITTMP 636 (667)
Q Consensus 623 g~~~~A~~~~~~m~ 636 (667)
+.+.|..+-..+.
T Consensus 506 -d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 506 -DPEKAESLSKKLP 518 (652)
T ss_pred -CHHHHHHHhhcCC
Confidence 5788888887774
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=6.1e-07 Score=80.38 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-------CChH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-------GSIG 524 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 524 (667)
-+.|++++--+.+. -|. .-..|+-.|.+.+++.+|..+.+++. |.++.-|-.-.-.+... .+..
T Consensus 270 gEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 45555555444431 222 12234445778888888877766542 32333332222222222 2355
Q ss_pred HHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 525 SSVKIFNEMTD-----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 525 ~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
-|.+.|+-..+ ..+.--.++..++.-..++++++.++..+..- +..|...--.+.++++..|.+.+|.++|-++
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 56677765542 12233445556666666778888888877775 2333333344778888888888888888776
Q ss_pred HHhhCCCCCcchhH-HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHhhhh
Q 005969 600 NRSYGVEPEMDHYH-CVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTF-LEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 600 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~ 664 (667)
....+ .+..+|. .|.++|.+.|+.+-|++++-++.-..+..+.-.+ -+.|.+++.+=.|..++
T Consensus 420 -s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 420 -SGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred -cChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33122 3445554 4677788888888888888888633344443333 34477777665554443
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=4.3e-06 Score=83.43 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=123.8
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--------CCCch-hHhHhhccCCccchhhHHHHHHHHHhCCCCCC
Q 005969 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINR-GF--------EPTQF-TFGGLLSCDSLNPVEGAQLQASVLKNGLFCAD 74 (667)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~p~~~-~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~ 74 (667)
+...|..+.+.|.+.++++-|.-.+-.|... |. .|+.. .--.+++..-+-.++|..++.+..+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 4567999999999999999998888888652 21 12211 111122222236778888888776654
Q ss_pred hhHHhhHHHHhhccCChhHHHHhhccCCCCC-chhHHHHHHHHHhCCChHHHHHHHHHHH----------HCC-------
Q 005969 75 AFVGTALLGLYGRHGCLDEVVSVFEDMPRKS-LVTWNSIVSIFGKHGFVEDCMFLFCELV----------RSE------- 136 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~----------~~~------- 136 (667)
.|=+.|-..|.+++|.++.+.-.+-. ..+|..-..-+-..++.+.|++.|++.- ...
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 44567778899999999987654422 2367667777777888999998887631 110
Q ss_pred --CcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHH
Q 005969 137 --VALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTII 214 (667)
Q Consensus 137 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 214 (667)
-.-|...|.---.-+-..|+.+.|..++.... -|-.++...+-.|+.++|-++-++-. |...+..+.
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhla 974 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLA 974 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHH
Confidence 00111222222222334444444444444332 23445555555666666666655433 445555666
Q ss_pred HHHHccCChhHHHHHHHHh
Q 005969 215 GALAESENFGKALELYLRM 233 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m 233 (667)
+.|-..|++.+|..+|.+.
T Consensus 975 R~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 6777777777777777654
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=3.1e-08 Score=102.41 Aligned_cols=241 Identities=10% Similarity=-0.059 Sum_probs=126.3
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhh---------ccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCC
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYG---------RHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 121 (667)
+.+.|...+++.++.. |.+...+..+..+|. ..+++++|...+++..+ | +...|..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4556666666666554 333444443333322 22346666666666543 2 34455556566666677
Q ss_pred hHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhcc
Q 005969 122 VEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKD 201 (667)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 201 (667)
+++|+..|++..+.+ +.+...+..+...+...|+.++|...++...+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777766643 223445555666666667777777777776665432 222223333345556667777666665
Q ss_pred CC---CC-CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHH-HhhccCChhHHHHHHHHHHHhcC-CC
Q 005969 202 VE---IR-DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVIN-SCAGLQNSILGKSIHAKVIKNAL-EC 275 (667)
Q Consensus 202 ~~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~-~~ 275 (667)
.. .| +...+..+...+...|++++|...+.++... .|+..+....+. .+...| +.+...++.+.+..- .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 43 12 2334555566666777777777777665443 344433333333 345555 355555555544321 11
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005969 276 DVFVGSALVDFYAKCDNLEGAHLCFSEISN 305 (667)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (667)
..... +-..+.-.|+-+.+..+ +++.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 11111 23334445555555544 55554
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=1.3e-07 Score=92.96 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCcc-hHHHHHHHHHHcCCh
Q 005969 377 GSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDIV-SWNIVIAACAHNGDY 452 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~~~~li~~~~~~g~~ 452 (667)
+.|..+|.+.|++++|...++ .|.++++... .+.+. .++.+...++..+++
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e-------------------------~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCE-------------------------RALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred HHHHHHHhccCChHHHHHHHH-------------------------HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 477788999999999999665 4555666532 22222 355667778888899
Q ss_pred hHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHH
Q 005969 453 KEVLELFKYMRAA---RIYPD----NYTFVSLLSACSKLCNLALGSSLHGLIKK 499 (667)
Q Consensus 453 ~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 499 (667)
++|..++....+. -+.++ ..+++.|...|...|++++|.++++.+..
T Consensus 342 Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9998888765432 11122 13455555556666666666655555443
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=1.1e-05 Score=80.73 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCcCCC-hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIVFPN-QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYA 288 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (667)
+.-+...|-..|++++|++++++..+. .|+ ...|..-.+.+.+.|++.+|...++...+.... |...-+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 344455667778888888888777665 455 344555555577778888888777777766533 6666667777777
Q ss_pred hcCChHHHHHHHhccCCCC
Q 005969 289 KCDNLEGAHLCFSEISNKN 307 (667)
Q Consensus 289 ~~g~~~~a~~~~~~~~~~~ 307 (667)
+.|++++|.+++.....++
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 8888888887776665544
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.00 E-value=5.4e-06 Score=80.79 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFKPDRV-ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
.++..+-..|+++.|..+++....+ .|+.+ .|..=.+.+...|++++|..++++. ++ --.||..+-..-..-..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea-~e-lD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEA-QE-LDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHH-Hh-ccchhHHHHHHHHHHHHH
Confidence 4455666666666666666666654 44432 4444455566666666666666666 33 123444444344555556
Q ss_pred cCChHHHHHHHHhC
Q 005969 622 YGHLKEAEKIITTM 635 (667)
Q Consensus 622 ~g~~~~A~~~~~~m 635 (667)
+++.++|.++....
T Consensus 452 An~i~eA~~~~skF 465 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKF 465 (700)
T ss_pred ccccHHHHHHHHHh
Confidence 66666666665555
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.8e-06 Score=76.52 Aligned_cols=261 Identities=11% Similarity=0.054 Sum_probs=188.9
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHH
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAAC 446 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 446 (667)
+......+.+.+...|+.++|...|+.. -.|-+........-.+.+.|++++...+...+-. .....|-.-....
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 3344467888888899999999988877 4444555555666667788888888777776653 2333444444555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
...++++.|+.+-++.++.. +-+...|-.--..+...++++.|.-.|+...... |.+..+|.-|++.|...|++.+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHH
Confidence 56788999999988887642 2233344444455778899999999999888764 55889999999999999999998
Q ss_pred HHHHHhcC---CCChhhHHHHH-HHHH-hCCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 527 VKIFNEMT---DRNVITWTALI-SALG-LNGFAQRALEKFREMEFLGFKPDR-VALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 527 ~~~~~~~~---~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.-+-+... ..+..+...+. ..+. ....-++|.+++++-.. +.|+- ...+.+...|...|+..++..++++..
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 77666443 23444444442 2222 22335789888888777 57874 467788888999999999999999774
Q ss_pred HhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 005969 601 RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN 640 (667)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~ 640 (667)
. ..||....+.|.+.+...+.+.+|++.|... .+.|+
T Consensus 466 ~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 466 I---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred h---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 3 5789999999999999999999999988766 44554
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=5.2e-08 Score=100.71 Aligned_cols=143 Identities=10% Similarity=-0.070 Sum_probs=61.0
Q ss_pred hhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005969 421 YNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 421 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
+++|...+++..+ .+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|+.++|...++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445444444432 122334444444444555555555555554432 112333444444445555555555555555
Q ss_pred HHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 498 KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRN-VITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
.+.... ++..+..+...+...|++++|...+++.. .|+ ...+..+..++...|+.++|...++++..
T Consensus 399 l~l~P~--~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 399 LKLDPT--RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 444311 12222222223333445555555544432 121 22233444444455555555555544433
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=2.5e-06 Score=85.22 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
.-+.+.|...|++++|++.+++.+++ .|+ ...|..-.+.+-..|++.+|.+.++..+... +.|...-+-.+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHH
Confidence 44566677788888888888887775 455 4566666777778888888888888877765 226666666777777
Q ss_pred hcCChHHHHHHHHhcCCCChh----------hH--HHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTDRNVI----------TW--TALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+.|++++|.+++....+++.. .| .....+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888887777654311 12 2235677778887777776666544
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=2.3e-07 Score=78.23 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=167.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
...|.-+|...|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.+++..... |.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence 4456778999999999999999999863 3345688889999999999999999999998875 557889999999999
Q ss_pred hcCChHHHHHHHHhcC-CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHH
Q 005969 519 KCGSIGSSVKIFNEMT-DRN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A 592 (667)
..|++++|...|+... .|+ ..+|..+.-+..+.|+.+.|.+.|++..+. .|+ +.+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999876 443 458889999999999999999999999985 554 56788889999999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTF 647 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 647 (667)
..+++.. .. +..++..+...-|+.-.+.|+.+.|.++=..+. ..|...-+.+.
T Consensus 193 r~~~~~~-~~-~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 193 RLYLERY-QQ-RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHH-Hh-cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 9999998 45 334889999889999999999988887766663 45655555443
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=2.7e-08 Score=87.87 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=96.1
Q ss_pred HHHHHhhcCChhHHHHHHhcCC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCh
Q 005969 411 IAGIYNRTGQYNETVKLLSQLE--RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF-VSLLSACSKLCNL 487 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~ 487 (667)
+..+|.+.|-+.+|++.|+... .|-+.||-.|-.+|.+..++..|+.++.+-.+. .|-.+|| .-+.+.+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhH
Confidence 3333444444444444443332 244444444444455545555555544444432 2333322 2233334444444
Q ss_pred hhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 488 ALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREM 564 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 564 (667)
+.|.++++...+.. +.+.....++...|.-.++++-|.+.++++.+ .+...|+.+.-+|.-.++++-++.-|++.
T Consensus 307 ~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 44555554444442 22334444444444444455555555544432 23344444444444455555555555554
Q ss_pred HHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 565 EFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 565 ~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...--.|+ ...|-.|.......||+..|.+.|+-.... -......++.|.-.-.+.|++++|..+++..
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 44332333 223444444444455555555555444211 2223344555554445555555555555444
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.6e-08 Score=87.09 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=185.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchH-HHHHHHHHHcCCh
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSW-NIVIAACAHNGDY 452 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~g~~ 452 (667)
+.+.+.|.+.|.+.+|.+.++.. ...+.+.+|..+..+|.+..+++.|..++.+..+ |-.+|| .-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 47889999999999999999876 8889999999999999999999999999998774 544444 3455667778999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
++|.++|+...+.. +.+......+...|.-.++++.|..++..+...|.. ++..|+.+.-.|...+++|-++.-|++
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999988753 345556667777888899999999999999999965 688999999999999999999888886
Q ss_pred cC----CCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 533 MT----DRN--VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 533 ~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.. +|+ ...|-.+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 65 344 3578888888899999999999999988763 334668999988889999999999999988
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=3.3e-05 Score=77.10 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVD 617 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 617 (667)
.|......+.+.++.++|...+.+.... .| ....|......+...|.+.+|.+.|.... -+.|+ +.+..++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 3444556677788888888888887764 44 45577777778888999999999998763 34454 567889999
Q ss_pred HHhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 618 LLVRYGHLKEAEK--IITTM-PFPP-NALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 618 ~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
++.+.|+..-|.. ++.++ ++.| +...|.-+...+.+.||.++|..+++.|
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998777777 77776 4444 6899999999999999999998877653
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=1.6e-07 Score=92.31 Aligned_cols=189 Identities=11% Similarity=0.005 Sum_probs=91.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHHh-----CCCCC-chhHHhHHHHHHHhcCChHHHHHHHHhcCC----------CChh-
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKT-----EIISS-DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----------RNVI- 539 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~- 539 (667)
+...|...+++++|..+|+++..- |...| -..+++.|..+|.+.|++++|...+++..+ |.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344455555555555555544321 11111 123444445555555555555554444331 1111
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CC--CC
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL---GFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSY---GV--EP 607 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--~~ 607 (667)
.++.+...|...+++++|..++++..+. -..++ ..++..|.+.|...|++++|.+++++++... +. .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3344455555556666666665554331 11121 2356666666666666666666666554321 11 11
Q ss_pred -CcchhHHHHHHHhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 608 -EMDHYHCVVDLLVRYGHLKEAEKIITTMP--------FPPN-ALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 608 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
....++.|...|.+.++..+|.++|.+.. ..|+ ..+|.-|...|.+.|+.|.|....+
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 12345556666666666665555555431 2222 3455566666666666666655543
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.9e-06 Score=74.80 Aligned_cols=259 Identities=8% Similarity=-0.020 Sum_probs=191.2
Q ss_pred CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHH---HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 005969 400 NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIV---IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVS 476 (667)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 476 (667)
..+.+......+..++...|+.++|+..|++..-.|+.+...| .-.+.+.|+.+....+...+.... .-....|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 5677788888999999999999999999999886555544332 233457888888888887776532 112222222
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCC
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGF 553 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~ 553 (667)
-........+.+.|..+-++..+.+ +.+...+-.-..++...+++++|.-.|+... .| +..+|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 2333445678888998888888775 3355666666678888999999999998766 44 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVL-TACR-HGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 630 (667)
+.+|.-+-+...+. ++.+..+...+. ..|. ...--++|.++++.-. .+.|+- .....+.+.+.+.|..+++..
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 99999998887774 344566666553 3443 3344578999988653 345553 456788889999999999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 631 IITTM-PFPPNALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 631 ~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
++++. ...||...-+.|...++..+....|...++
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99987 578999999999999988887777654443
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-05 Score=78.84 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=80.3
Q ss_pred HHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhh
Q 005969 414 IYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN-YTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 489 (667)
.+.+.++.++|..-+.+..+ .....|......+...|..++|.+.|..... +.|+. .+..++...+.+.|+...
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcch
Confidence 34444444444434433332 3344455555666677888888888887776 45554 477778888888887777
Q ss_pred HHH--HHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 490 GSS--LHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 490 a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
+.. ++..+.+.+ |.+...|-.+...+.+.|+.++|.+.|+...
T Consensus 737 a~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 737 AEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 777 788887775 5578888888888888888888888888665
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=0.00018 Score=72.46 Aligned_cols=239 Identities=12% Similarity=0.041 Sum_probs=116.2
Q ss_pred ChhHHhhHH--HHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHC-C-------CcCChhh
Q 005969 74 DAFVGTALL--GLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRS-E-------VALTESS 143 (667)
Q Consensus 74 ~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-------~~~~~~~ 143 (667)
|..+-.+++ ..|...|+.|.|.+-.+.++ +-..|..|.+.|.+..+.|-|.-++-.|... | .+-+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 333334443 34555566666655554443 3345556666666665555555555444321 0 1111122
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC-CchhHHHHHHHHHccCC
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR-DVVSWNTIIGALAESEN 222 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~ 222 (667)
=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-..- =..+|......+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 2222222335566666666666655432 2333444556666666655443321 11244444555555556
Q ss_pred hhHHHHHHHHhH----------hCC---------cCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHH
Q 005969 223 FGKALELYLRMS----------VDI---------VFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSAL 283 (667)
Q Consensus 223 ~~~a~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 283 (667)
.+.|++.|++-. ... -..|...|..--.-+-..|+.+.|+.+|+...+. -++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhh
Confidence 666666555421 000 0112222222222233455666666665554432 445
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHH
Q 005969 284 VDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELL 334 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~ 334 (667)
++..|-.|+.++|.++-++- .|....-.+.+.|-..|+.. |...|.+.+
T Consensus 945 VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55556666666666665543 34444555666777777777 777766543
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=1.2e-06 Score=74.06 Aligned_cols=185 Identities=11% Similarity=-0.036 Sum_probs=154.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALG 549 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 549 (667)
+..-|.-.|.+.|+...|..-+++..+.. |.+..++..+...|.+.|+.+.|.+.|+...+ .+-...|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45556678999999999999999999985 55788999999999999999999999998763 36678899999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHH
Q 005969 550 LNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
..|++++|...|++....-.-|. +.||..+..+..+.|+.+.|...|++..+. .+-.+.....+.....+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988433332 558999999999999999999999988544 333456678889999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHh
Q 005969 629 EKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDT 661 (667)
Q Consensus 629 ~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~ 661 (667)
..++++.. ..++..+.-..|+--.+.||...+.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 99999984 5578877777777788888877654
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=4.4e-07 Score=84.10 Aligned_cols=250 Identities=14% Similarity=0.072 Sum_probs=160.4
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHH
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
+-+.-.|++..++.-.+.. ..+........+.+++...|+++.++.-+..-..|.......+...+...++-+.+..-
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3445567777777544411 11122334456777888888888776666555566666665555444433455556555
Q ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC
Q 005969 459 FKYMRAARIYPDNYTF-VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN 537 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 537 (667)
+++....+..++..++ ......+...|+++.|.+++... . +.......+..|.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------G-SLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------C-cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5554433333233333 33334567789999998888642 2 67777888999999999999999999998532
Q ss_pred -hhhHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 538 -VITWTALISALG----LNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 538 -~~~~~~li~~~~----~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
-.+...+..++. -.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++.... -+-++.+.
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~L 238 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTL 238 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHH
Confidence 223333444332 334699999999998765 5678889999999999999999999999987433 34456677
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHhCC-CCCC
Q 005969 613 HCVVDLLVRYGHL-KEAEKIITTMP-FPPN 640 (667)
Q Consensus 613 ~~l~~~~~~~g~~-~~A~~~~~~m~-~~p~ 640 (667)
..++.+....|+. +.+.+.+.+++ ..|+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 7788888888877 66788998885 4444
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=3.2e-05 Score=68.05 Aligned_cols=191 Identities=6% Similarity=-0.026 Sum_probs=132.5
Q ss_pred HhhHHHHhhccCChhHHHHhhccCCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHH-HHHHhcc
Q 005969 78 GTALLGLYGRHGCLDEVVSVFEDMPRK---SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVG-VIHGLSN 153 (667)
Q Consensus 78 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~ 153 (667)
+.+.+..+.+..++++|++++....++ +....+.+...|-...++..|-++++++-.. -|...-|.. -.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 456666677888899999888776652 5556777777888888999999999988663 355554443 2355566
Q ss_pred cCchHHHHHHHHHHHHhcCCCchHHHHHHHHH--HHhcCChhHHHHhhccCC-CCCchhHHHHHHHHHccCChhHHHHHH
Q 005969 154 EQDLEFGEQIHGLVIKNGFDYELLVANSLVNM--YFQCAGIWSAEKMFKDVE-IRDVVSWNTIIGALAESENFGKALELY 230 (667)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 230 (667)
.+.+..|..+...|... +....-..-+.+ .-..+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 77778888887777542 111111111222 234677888888888887 466666666666677899999999999
Q ss_pred HHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 005969 231 LRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALE 274 (667)
Q Consensus 231 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 274 (667)
+...+-|---....|+..+..+ +.|+.+.|+...+++.++|++
T Consensus 168 qaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 8887765444456777766554 458889999999999888864
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.70 E-value=1.7e-06 Score=81.65 Aligned_cols=214 Identities=9% Similarity=-0.117 Sum_probs=120.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCCc--hhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 15 AYSRCGYVEDALRMFLYMINRGF-EPTQ--FTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
.....+..+.++.-+.+++...- .|+. ..|..+-. ...++.+.|...+++.++.. |.+...|+.+...|...|
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCC
Confidence 44455778889999999987532 2222 11221111 33347777777777777765 556677777777777788
Q ss_pred ChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHH
Q 005969 90 CLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGL 166 (667)
Q Consensus 90 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 166 (667)
++++|...|+...+ | +..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|...+..
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888777777643 3 34466666677777778888888777776643 4332222222223345667777777765
Q ss_pred HHHhcCCCchHHHHHHHHHHHhcCChhHH--HHhhccC----C---CCCchhHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 167 VIKNGFDYELLVANSLVNMYFQCAGIWSA--EKMFKDV----E---IRDVVSWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~----~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
..... .++...+ .+.. ...|+...+ .+.+... + .+....|..+...+.+.|++++|...|++....
T Consensus 191 ~~~~~-~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44332 2222221 2222 223443322 2111111 1 112345666666777777777777777766654
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=5.6e-06 Score=78.17 Aligned_cols=203 Identities=11% Similarity=-0.054 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
..|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|+++.|...++...+.. |.+...+..+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 346666667777888888888888777743 2345677777777888888888888888877764 4356677777777
Q ss_pred HHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTD--RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
+...|++++|.+.|+...+ |+..........+...++.++|.+.+.+.... ..|+... ..+ .....|+...+ +
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~-~~~--~~~~lg~~~~~-~ 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWG-WNI--VEFYLGKISEE-T 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccH-HHH--HHHHccCCCHH-H
Confidence 7788888888888877663 43321111122233456788888888665543 2333221 122 22234555443 3
Q ss_pred HHHHhHHhhCCCC-----CcchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHH
Q 005969 595 LFERMNRSYGVEP-----EMDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPNALIWRTF 647 (667)
Q Consensus 595 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l 647 (667)
.++.+.+.....+ ....|..+...+.+.|++++|...|++.. . .||.+-++..
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4444422211111 23467778888888888888888888762 3 3465555543
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.8e-08 Score=57.03 Aligned_cols=32 Identities=34% Similarity=0.603 Sum_probs=21.0
Q ss_pred CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 568 GFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|+.||..||+.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=1.1e-06 Score=81.48 Aligned_cols=145 Identities=15% Similarity=0.079 Sum_probs=92.2
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCChhhHHHHH
Q 005969 419 GQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS----KLCNLALGSSLH 494 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~ 494 (667)
|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..++...|..+|
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3333333355543 34455566777888888888888888888764 333 33334444432 234678888888
Q ss_pred HHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCC
Q 005969 495 GLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFA-QRALEKFREMEFLGFK 570 (667)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~g~~ 570 (667)
+++.+.- ++++.+.+.+..++...|++++|.+++++..+ .+..+...++.+....|+. +.+.+++.++... .
T Consensus 191 ~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~ 266 (290)
T PF04733_consen 191 EELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--N 266 (290)
T ss_dssp HHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--T
T ss_pred HHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--C
Confidence 8876542 34777888888888888888888888887663 2445666667777777776 6677788887774 5
Q ss_pred CC
Q 005969 571 PD 572 (667)
Q Consensus 571 p~ 572 (667)
|+
T Consensus 267 p~ 268 (290)
T PF04733_consen 267 PN 268 (290)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00014 Score=64.21 Aligned_cols=343 Identities=13% Similarity=0.084 Sum_probs=155.9
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC--CCchhHHH-HHHHHHcc
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI--RDVVSWNT-IIGALAES 220 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 220 (667)
+.+++..+.+..+++.|.+++..-.++. +.+....+.|...|-+..++..|-..++++.+ |...-|.. -..++.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444444455555555544444332 11334444555555555555555555555542 32223332 23566777
Q ss_pred CChhHHHHHHHHhHhCCcCCChhhHHHHHHH--hhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 005969 221 ENFGKALELYLRMSVDIVFPNQTTFVYVINS--CAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHL 298 (667)
Q Consensus 221 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 298 (667)
+.+.+|+.+...|... |+...-..-+.+ .-..+++..+..++++....| +..+.+.......+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8888888888777643 222222222222 223455555665555543221 33333344444556666666666
Q ss_pred HHhccCC----CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchh
Q 005969 299 CFSEISN----KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYE 373 (667)
Q Consensus 299 ~~~~~~~----~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (667)
-|+...+ .....||..+..|.+ ++.+ |++...+..++|++.-+..-. -|...|+ |.
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy~~-~qyasALk~iSEIieRG~r~HPElgI----------------Gm~tegi--Dv 226 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHYSS-RQYASALKHISEIIERGIRQHPELGI----------------GMTTEGI--DV 226 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHhh-hhHHHHHHHHHHHHHhhhhcCCccCc----------------cceeccC--ch
Confidence 6665544 233445554444433 3333 666666666665543322100 0000011 10
Q ss_pred hhHHHHHHHHHhhCCHH-HHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-----CCCcchHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLIS-DALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-----RPDIVSWNIVIAACA 447 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~ 447 (667)
... |+.. -+.. .-...++.-...+.+.++++.|.+.+..|+ +.|++|...+.-.-
T Consensus 227 rsv----------gNt~~lh~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n- 287 (459)
T KOG4340|consen 227 RSV----------GNTLVLHQS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN- 287 (459)
T ss_pred hcc----------cchHHHHHH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-
Confidence 000 0000 0000 000122333334556677777777777776 24555543332211
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
-.+++....+-+.-+.+.. +-...||..++-.||+..-++.|-.++.+-......-.+...|+.|=.........++|+
T Consensus 288 ~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAF 366 (459)
T ss_pred ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHH
Confidence 1233444444444444432 223456667777777776666666665543222211123344443333333334555555
Q ss_pred HHHHh
Q 005969 528 KIFNE 532 (667)
Q Consensus 528 ~~~~~ 532 (667)
+-+..
T Consensus 367 KKL~~ 371 (459)
T KOG4340|consen 367 KKLDG 371 (459)
T ss_pred HHHHH
Confidence 54443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=0.00011 Score=72.28 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=129.3
Q ss_pred CChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 419 GQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 419 ~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
+..+.+.+.+..... |+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 94 GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444445555554322 22 1233345567788999999999999998854 3445677778888889999999999999
Q ss_pred HHHHhCCCCCch--hHHhHHHHHHHhcCChHHHHHHHHhcCCCCh--hhHH------HHHHHHHhCCChHHHHHH--HHH
Q 005969 496 LIKKTEIISSDT--FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV--ITWT------ALISALGLNGFAQRALEK--FRE 563 (667)
Q Consensus 496 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~~~~~~A~~~--~~~ 563 (667)
...+....+++. ..+..+...+...|++++|..++++...+.. .... .++.-+...|....+.++ +..
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~ 252 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLAD 252 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 887764322232 3455778888999999999999998763211 2111 223333444443333332 111
Q ss_pred HHHcCCC--CCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC--------CCcchhHHHHHHHhhcCChHHHHHHHH
Q 005969 564 MEFLGFK--PDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE--------PEMDHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 564 ~~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
....... ...........++...|+.+.|..+++.+... ... ......-...-++.+.|+.++|.+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 253 YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111 11122235677788899999999999988443 211 012222233334458899999988887
Q ss_pred hC
Q 005969 634 TM 635 (667)
Q Consensus 634 ~m 635 (667)
..
T Consensus 332 ~a 333 (355)
T cd05804 332 PV 333 (355)
T ss_pred HH
Confidence 65
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=0.0013 Score=68.05 Aligned_cols=248 Identities=10% Similarity=-0.035 Sum_probs=128.7
Q ss_pred HhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHH
Q 005969 384 AKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
...|++.-+...|-.. ..|.....|..+.-.+.+..+++.|...|...+..+ ...|--........|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666665544 566667777778888888999999999998887533 34443333334456777777777
Q ss_pred HHHH--H--HcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh--------CCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 459 FKYM--R--AARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT--------EIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 459 ~~~m--~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
|..- . ..|-.|+..-+-.........|+.+.-....+.+... +..|.+...|.+.....-+.+..++|
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a 986 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAA 986 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHH
Confidence 7651 1 1222333332222222233445544333322222111 11344566777777777777777777
Q ss_pred HHHHHhcC-----CCChhhHHHH----HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHH
Q 005969 527 VKIFNEMT-----DRNVITWTAL----ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFE 597 (667)
Q Consensus 527 ~~~~~~~~-----~~~~~~~~~l----i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 597 (667)
..+..+.. +-+...|+.. .+.++..|.++.|..-+..... ..+..+...-+.. .-.++++++.+.|+
T Consensus 987 ~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe 1062 (1238)
T KOG1127|consen 987 LELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFE 1062 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHH
Confidence 77666544 2345555532 2334444555544332211110 0011111111111 33567777777777
Q ss_pred HhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 598 RMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 598 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+...-..-..+ ......+..+....+..+.|...+-+.
T Consensus 1063 ~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1063 QALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 66332122222 233455666666666677776665544
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=0.0001 Score=72.52 Aligned_cols=196 Identities=11% Similarity=-0.068 Sum_probs=123.7
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCchhHhHhhc---cCCccchhhHHHHHHHHHhCCCCCChhHHh-
Q 005969 5 NVVSFNSIISAYSRCGYVEDALRMFLYMINRGF-EPTQFTFGGLLS---CDSLNPVEGAQLQASVLKNGLFCADAFVGT- 79 (667)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 79 (667)
....|..+...+...|+.+.+...+....+... .++......+.. ...++++.|...+++.++.. |.|...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 344677777777788888888777777665422 122221111111 44458889999999888765 45554444
Q ss_pred --hHHHHhhccCChhHHHHhhccCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhccc
Q 005969 80 --ALLGLYGRHGCLDEVVSVFEDMPR--KS-LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 80 --~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
.+.......+..+.+.+.++.... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222222335666666666655322 22 2233345567788899999999999888754 33455667777788888
Q ss_pred CchHHHHHHHHHHHHhcC-CCch--HHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 155 QDLEFGEQIHGLVIKNGF-DYEL--LVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
|++++|...++...+... .++. ..|..+...+...|++++|.+.+++..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 888888888888776532 1222 234466777777888888888877754
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.5e-08 Score=55.58 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=31.8
Q ss_pred CCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 604 GVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
|+.||..+|+.|+.+|++.|+.++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 899999999999999999999999999999984
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.00048 Score=71.14 Aligned_cols=159 Identities=12% Similarity=0.033 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Q 005969 108 TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGF-DYELLVANSLVNMY 186 (667)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 186 (667)
.|..|...|+.--+...|.++|+...+.+ .-+..........++...+++.|..+.-...+... ..-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 55556666655556666666666665533 12344555566666666666666666222221110 00111222233334
Q ss_pred HhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH--hhccCChhHH
Q 005969 187 FQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINS--CAGLQNSILG 261 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 261 (667)
.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+...- .|+. +|...-.+ .+..|...++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 455566666666654432 35556666777777777777777777665542 3432 23222222 3455666666
Q ss_pred HHHHHHHHH
Q 005969 262 KSIHAKVIK 270 (667)
Q Consensus 262 ~~~~~~~~~ 270 (667)
...+..+..
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 666665543
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0017 Score=62.68 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
.+.....+++....-..--..+|..+++...+..-+..|..+|.++.+.+..+-++..+++++.-|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 5566666766655432222346777777778888889999999999988876667788888888777 467888999998
Q ss_pred hcCC--CChhh-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhhC--
Q 005969 532 EMTD--RNVIT-WTALISALGLNGFAQRALEKFREMEFLGFKPDR--VALIAVLTACRHGGLVREGMELFERMNRSYG-- 604 (667)
Q Consensus 532 ~~~~--~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 604 (667)
--.+ +|... -...+.-+...|+-..|..+|++....++.|+. ..|..++.-=..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6542 44443 345677778888888999999999888777764 4899999988899999999999888765543
Q ss_pred CCCCcchhHHHHHHHhhcCChHH
Q 005969 605 VEPEMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 605 ~~~~~~~~~~l~~~~~~~g~~~~ 627 (667)
..+....-..+++.|.-.+...-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 34444445555666655554433
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.0027 Score=71.42 Aligned_cols=161 Identities=10% Similarity=-0.014 Sum_probs=90.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHH-----hH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAAR--IYPD--NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVC-----NM 512 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 512 (667)
+...+...|++++|...+.+..... ..+. ...+..+...+...|+.+.|.+.+...............+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 3444555677777777776654321 1121 2233444555666777777777777665431111010001 11
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCChh-------hHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHHHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTDRNVI-------TWTALISALGLNGFAQRALEKFREMEFL----GFKPD-RVALIAVL 580 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~li 580 (667)
.+..+...|+.+.|.+.+.....+... .+..+..++...|+.++|...+++.... |..++ ..+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 223444567778887777665532211 1234556677778888888887776553 22222 23555666
Q ss_pred HHHhccCCHHHHHHHHHHhHHh
Q 005969 581 TACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.++...|+.++|...+.+....
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777888888888888877443
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=9.3e-06 Score=78.25 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=178.8
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHHHHHHHHHcCChhHH
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNIVIAACAHNGDYKEV 455 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 455 (667)
.-+.+.|++.+|.-.|+.. ..|.+...+..|..+-...++-..|+..+.+..+.|+ .....|.-.|...|.-..|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3456788899999889887 7888889999999999999999999999988876444 4556666778888888999
Q ss_pred HHHHHHHHHcCCC-----C---CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 456 LELFKYMRAARIY-----P---DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 456 ~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
...+++......+ + +...-.. ..+.....+....++|-.+........|+.+...|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988654311 0 0000000 1122223334455556555555443358999999999999999999999
Q ss_pred HHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHh-
Q 005969 528 KIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV-ALIAVLTACRHGGLVREGMELFERMNRS- 602 (667)
Q Consensus 528 ~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~- 602 (667)
..|+... +| |...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-....-
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999887 45 678999999999999999999999999999 689844 5566777899999999999888765321
Q ss_pred -hC------CCCCcchhHHHHHHHhhcCChHHHHHHHH
Q 005969 603 -YG------VEPEMDHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 603 -~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
.+ ..++..+|.+|=.++.-.++.+-+.+...
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 11 11122456666655555666554544443
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=0.0045 Score=65.81 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 573 RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
......+++.+...|..+...+.++.+...+...|....|
T Consensus 582 ~~l~~~~~~~L~~~g~~~~l~~~~~~~~~~~~~~~e~~iW 621 (906)
T PRK14720 582 HKVNKYVFDSLYEEGKFDELNSLFKYVIKNYKEYPEAFIW 621 (906)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhccCccchhh
Confidence 4444556677777777777778888777776666665443
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=3e-05 Score=76.95 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=160.0
Q ss_pred CCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 401 IPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
.||-...-..+...+...|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4444555566777777777777777787765 4667778888999988899888888777 37888888888887
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A 557 (667)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ | -..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777777787777765433 111222223346788888888886553 2 445777778888888888999
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 558 LEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++..+- + ..+..+|...+......|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 988888887 4776 458899999999999989999888888444 4 556667777888888889999998888877
No 106
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00023 Score=61.98 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=153.3
Q ss_pred HHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHH-HHH
Q 005969 381 TSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEV-LEL 458 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~ 458 (667)
+-+.=.|++..++..-... ..+.....-..+.++|...|++.....-...-..+.......+......-++.++- .++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 3444456666666655544 23344445555666777777665544333333323333333333333333443333 344
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC-
Q 005969 459 FKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN- 537 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 537 (667)
.+.+.......+......-...|+..++.+.|.+...... +......=+..+.+..+++-|.+.++.|.+-|
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4455554444443444444455888899999988877621 34444444566777888999999999998754
Q ss_pred hhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 538 VITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 538 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|++.+.+....++...|++++|..++++...+ ..-++.+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHH
Confidence 4466666666543 45688899999999875 6888999999999999999999999999988555 445567777
Q ss_pred HHHHHHhhcCChHHH-HHHHHhC
Q 005969 614 CVVDLLVRYGHLKEA-EKIITTM 635 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A-~~~~~~m 635 (667)
.++.+-...|...++ .+.+..+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHH
Confidence 777666667765443 3455555
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.30 E-value=0.00067 Score=61.31 Aligned_cols=304 Identities=11% Similarity=0.019 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHH---HHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHh
Q 005969 277 VFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALIL---GYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSS 352 (667)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~ 352 (667)
+.-.--+...+...|++.+|+.-|....+.|+..|-++.+ .|...|+.. |+.-+....+. +||-..-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR------ 109 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR------ 109 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH------
Confidence 3334455666777888999999998888888888877654 366677777 77666665553 45433221
Q ss_pred hhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcC
Q 005969 353 LAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQL 431 (667)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (667)
-.-...+.+.|.++.|..-|+.. ...|+..+-. .+..+.-..++-
T Consensus 110 ------------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~------- 155 (504)
T KOG0624|consen 110 ------------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEH------- 155 (504)
T ss_pred ------------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHH-------
Confidence 01224567788888888877665 2222211110 000000000000
Q ss_pred CCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 005969 432 ERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN 511 (667)
Q Consensus 432 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (667)
......+..+...|+...|+.....+.+- .+.|...|..-..+|...|++..|+.-++...+... .+...+-
T Consensus 156 -----~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~y 227 (504)
T KOG0624|consen 156 -----WVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHY 227 (504)
T ss_pred -----HHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHH
Confidence 01112233444566777777777776663 244666666666677777777777666666555532 2444555
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--CChh----hHHHH---------HHHHHhCCChHHHHHHHHHHHHcCCCCC--Hh
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD--RNVI----TWTAL---------ISALGLNGFAQRALEKFREMEFLGFKPD--RV 574 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l---------i~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~ 574 (667)
-+-..+...|+.+.++...++..+ ||.. .|..| +......+++.++++-.+...+. .|. ..
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~i 305 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMI 305 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccce
Confidence 555666666777777766666653 3322 12111 12234455666666666666654 333 22
Q ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 575 ---ALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 575 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+..+..++...|++.+|++...+.. .+.|+ ..++..=..+|.-...+++|+.-|++.
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23344455556667777776666553 23443 566666666666666666666666555
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=4.9e-05 Score=75.49 Aligned_cols=236 Identities=14% Similarity=0.036 Sum_probs=167.9
Q ss_pred CcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC--CCCcchHHHHHHHH
Q 005969 369 YENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE--RPDIVSWNIVIAAC 446 (667)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~ 446 (667)
++|-...-..+...+...|-...|..++++. ..+..++.+|...|+..+|..+..+.. +|+...|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 3444445556778888889999999988864 456678888888888888888876655 36777777777666
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ |....+|-.+.-+..+.+++..|
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHH
Confidence 5555577888887764432 11222222334678888888888877765 33577887888888888899988
Q ss_pred HHHHHhcC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh
Q 005969 527 VKIFNEMT--DRN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 527 ~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (667)
.+.|.... +|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.++..-.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888776 564 4589999999999999999999999888876 3344556666666778889999998888875443
Q ss_pred CCCCCcchhHHHHHHHh
Q 005969 604 GVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~ 620 (667)
....|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 33335555555555544
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00019 Score=76.61 Aligned_cols=217 Identities=10% Similarity=0.006 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCC-------cchhHHHHHHHhhcCChhHHHHHHhcCCCC--CcchHHHHH
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTALNIPRA-------VVPANIIAGIYNRTGQYNETVKLLSQLERP--DIVSWNIVI 443 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li 443 (667)
...|-..|..+...++.++|.++.++.....+ ...|.++++.-..-|.-+...++|++..+- ....|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34555677777777888888887777622221 223444555555555666666677766642 224566677
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
..|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..+++++.+.-..........-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777777777665 334556677777777777777777777776666522111233344445555666777
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhccCCHH
Q 005969 524 GSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDR--VALIAVLTACRHGGLVR 590 (667)
Q Consensus 524 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~ 590 (667)
+.+..+|+.... .-...|+.++..-.++|+.+.+..+|++....++.|.. ..|.-.+..=-+.|+-.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 777777776652 24556777777777777777777777777777666642 24455554444444433
No 110
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.27 E-value=0.0042 Score=58.73 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=126.8
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHh-c---cCChhhHHHHHHHHHHhCCCC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL-------LSACS-K---LCNLALGSSLHGLIKKTEIIS 504 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------l~~~~-~---~~~~~~a~~~~~~~~~~~~~~ 504 (667)
+.+|..++....+.++...|.+.+.-+.- +.|+...-.-+ -+..+ . ..+...-..+|+.+....+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 34566677777777777777777776654 33443321111 11122 1 122334455566665554322
Q ss_pred CchhHHhHHH---HHHHhcCC-hHHHHHHHHhcCC---CChhhHHHHH----HHHHh---CCChHHHHHHHHHHHHcCCC
Q 005969 505 SDTFVCNMLI---DMYGKCGS-IGSSVKIFNEMTD---RNVITWTALI----SALGL---NGFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 505 ~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~A~~~~~~~~~~g~~ 570 (667)
......|+ .-+.+.|. -++|.++++.+.+ .|...-|.+. ..|.+ ...+.+-+.+-+-+.+.|+.
T Consensus 376 --qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 --QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred --HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 22222333 33455565 7788899888773 3444333322 33322 23355555666666778888
Q ss_pred CC----HhHHHHHHHH--HhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 005969 571 PD----RVALIAVLTA--CRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIW 644 (667)
Q Consensus 571 p~----~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 644 (667)
|- ...-|.|.++ +...|++.++...-.-+ .+ +.|++.+|.-++-++....++++|.+++.+++ |+..++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL-~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL-TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhH
Confidence 84 3355666655 46789999988776655 33 78999999999999999999999999999996 688888
Q ss_pred HHHHH
Q 005969 645 RTFLE 649 (667)
Q Consensus 645 ~~l~~ 649 (667)
++-++
T Consensus 529 dskvq 533 (549)
T PF07079_consen 529 DSKVQ 533 (549)
T ss_pred HHHHH
Confidence 76544
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=5.6e-05 Score=69.27 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=110.8
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch-h
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN----YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT-F 508 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 508 (667)
.....+-.+...+...|++++|...|++.... .|+. .++..+..++.+.|+++.|...++.+.+.....+.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 44556677777888889999999999888774 3432 356667778888889999999998888765322111 1
Q ss_pred HHhHHHHHHHhc--------CChHHHHHHHHhcCC--CChh-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 005969 509 VCNMLIDMYGKC--------GSIGSSVKIFNEMTD--RNVI-TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALI 577 (667)
Q Consensus 509 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 577 (667)
.+..+...+... |+.++|.+.++.+.+ |+.. .+..+..... ... .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 344444445443 556667776666652 3221 1111110000 000 00 00012
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
.+...+.+.|++++|...+++....+.-.| ....+..++.++.+.|++++|.+.++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567778888888888888765532222 34567778888888888888888777764
No 112
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2.1e-06 Score=50.90 Aligned_cols=35 Identities=40% Similarity=0.787 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQ 41 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 41 (667)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999974
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.24 E-value=0.0018 Score=72.75 Aligned_cols=221 Identities=8% Similarity=-0.101 Sum_probs=122.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCC------Cc--hHHHHHHHHHH
Q 005969 115 IFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFD------YE--LLVANSLVNMY 186 (667)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 186 (667)
.+...|+++.+...++.+.......++.........+...|+++++..++......--. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456677666666655422111122222333344445678888888888776543111 11 12222333455
Q ss_pred HhcCChhHHHHhhccCCC----CCc----hhHHHHHHHHHccCChhHHHHHHHHhHhCCc---CC--ChhhHHHHHHHhh
Q 005969 187 FQCAGIWSAEKMFKDVEI----RDV----VSWNTIIGALAESENFGKALELYLRMSVDIV---FP--NQTTFVYVINSCA 253 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~t~~~ll~~~~ 253 (667)
...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888777765431 121 2344555566778888888888877654211 11 1223344445567
Q ss_pred ccCChhHHHHHHHHHHHh----cCCC---CchHHHHHHHHHHhcCChHHHHHHHhccCC------CC--cccHHHHHHHH
Q 005969 254 GLQNSILGKSIHAKVIKN----ALEC---DVFVGSALVDFYAKCDNLEGAHLCFSEISN------KN--IVSWNALILGY 318 (667)
Q Consensus 254 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~--~~~~~~li~~~ 318 (667)
..|+++.|...+++.... +... ....+..+...+...|++++|...+.+... +. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 788888888887766543 2111 122344455566677888888887776533 11 12233344455
Q ss_pred hcCCChH-HHHHHHHHHH
Q 005969 319 ASKSSPT-SIFLLIELLQ 335 (667)
Q Consensus 319 ~~~~~~~-a~~~~~~m~~ 335 (667)
...|+.+ |...+.+...
T Consensus 623 ~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 623 LARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 6778877 7777766543
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=0.00012 Score=67.08 Aligned_cols=182 Identities=13% Similarity=0.030 Sum_probs=126.8
Q ss_pred CCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----
Q 005969 403 RAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDI----VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY---- 472 (667)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 472 (667)
.....+......+...|++++|...|+++.. |+. ..+..+..++...|++++|...++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 3445566777888999999999999998764 332 356777888999999999999999998753 4322
Q ss_pred HHHHHHHHHhcc--------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHH
Q 005969 473 TFVSLLSACSKL--------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTAL 544 (667)
Q Consensus 473 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 544 (667)
++..+..++.+. |+.+.|.+.++.+.+.. |.+......+..... ..... ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH----------HHHHHHH
Confidence 344445555544 67889999999998875 323333322221111 00000 0111245
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGF-KP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
...+.+.|++++|+..+++..+..- .| ....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999988521 12 2468889999999999999999999988544
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00052 Score=59.87 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC-CcchHHHHHHHHHH----cCChhH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP-DIVSWNIVIAACAH----NGDYKE 454 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~ 454 (667)
...|...|++++|++.... -.+......-..++.+..+.+-|++.+++|.+. +..+.+.|..+|.+ .+.+..
T Consensus 115 a~i~~~~~~~deAl~~~~~---~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL---GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hHHhhcCCChHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 3456677777777775553 122222333334445555555555566665542 23344445555443 234555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
|.-+|++|.++ ..|++.+.+-...++...+++++|..+++....... .++.+...++-.-...|
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhC
Confidence 66666666543 455666666666566666666666666665555432 23444444443333333
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00032 Score=61.18 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=121.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhC
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLN 551 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 551 (667)
..+-..+...|+-+....+........ +.|......++....+.|++..|...+.+... +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555566667777777777776655443 33667777788888999999999999988774 4677889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHH
Q 005969 552 GFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (667)
|+.+.|..-|.+..+. .| ++..++.|.-.+.-.|+.+.|..++.+. .. .-.-+..+-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a-~l-~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPA-YL-SPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHH-Hh-CCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999998884 55 4667788888888899999999999887 33 233466777888888889999999998
Q ss_pred HHHhCC
Q 005969 631 IITTMP 636 (667)
Q Consensus 631 ~~~~m~ 636 (667)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 877664
No 117
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=5.1e-05 Score=72.88 Aligned_cols=129 Identities=10% Similarity=0.112 Sum_probs=90.7
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+. .+-+......-.+.|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344555666666777888888888777655555666777777777777888888887764 1234556666666777888
Q ss_pred CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 005969 588 LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPP 639 (667)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p 639 (667)
+++.|+++.++++.. .+-+..+|..|..+|.+.|++++|+-.++.+++.|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888877543 33444678888888888888888888888876433
No 118
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.013 Score=60.53 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=89.7
Q ss_pred HHHHHHHHHhccCChhhH---HHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHH
Q 005969 473 TFVSLLSACSKLCNLALG---SSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----RNVITWTALI 545 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li 545 (667)
+.+.|+..|-+.++.... +-+++.-.... |.+..+--.+++.|+-.|-+..|.++|+.+.- -|...|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 345667778777776643 33344433332 33566666788888888999999999888762 2322222 23
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHH---HHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVRE---GMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
.-+...|++..+...++...+- +.-+ ..+-..+..+| +.|.+.+ -..+-+++..+ ...-...+-+..++.++.
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3444556666666666655442 1111 11222333333 3344443 34444444333 222233445667777788
Q ss_pred cCChHHHHHHHHhCCCCC
Q 005969 622 YGHLKEAEKIITTMPFPP 639 (667)
Q Consensus 622 ~g~~~~A~~~~~~m~~~p 639 (667)
.++.++-...++.|..+|
T Consensus 592 ~~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMKLPP 609 (932)
T ss_pred CCcHHHHHHHHhccccCc
Confidence 888888888888876333
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00022 Score=62.23 Aligned_cols=156 Identities=14% Similarity=0.012 Sum_probs=127.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC-C--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT-D--RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
|... ..+-..+...|+-+....+..... . .|......++......|++..|+..+++.... -++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 4444 556677777888888887777754 2 34456667899999999999999999999885 36688899999999
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHH
Q 005969 583 CRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYD 660 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a 660 (667)
|.+.|+++.|..-|.+..+- .+-++..++.|...+.-.|+++.|..++.+.. -..|..+-+.|..+....||++.|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999988544 34456678899999999999999999998884 234788889999999999999999
Q ss_pred hhhhh
Q 005969 661 TLNST 665 (667)
Q Consensus 661 ~~~~~ 665 (667)
+.+..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 88764
No 120
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=3.4e-06 Score=49.54 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEP 39 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 39 (667)
+.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.16 E-value=0.00026 Score=62.02 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=98.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ |.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 4567778887776544432211 11 01223455566666666666654 5577788888888888888
Q ss_pred hHHHHHHHHhcCC--C-ChhhHHHHHHHH-HhCCC--hHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHH
Q 005969 523 IGSSVKIFNEMTD--R-NVITWTALISAL-GLNGF--AQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 523 ~~~A~~~~~~~~~--~-~~~~~~~li~~~-~~~~~--~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
+++|...|+...+ | +...+..+..++ ...|+ .++|.+++++..+. .| +...+..+...+.+.|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888877663 3 455666666653 55565 47888888888775 44 456777777777888888888888
Q ss_pred HHHhHHhhCCCCCcchh
Q 005969 596 FERMNRSYGVEPEMDHY 612 (667)
Q Consensus 596 ~~~~~~~~~~~~~~~~~ 612 (667)
|+++.+. .+|+..-+
T Consensus 167 ~~~aL~l--~~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDL--NSPRVNRT 181 (198)
T ss_pred HHHHHhh--CCCCccHH
Confidence 8887444 45555443
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00027 Score=68.58 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=174.6
Q ss_pred HHHHhhcCChhHHHHHHhcCCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCh
Q 005969 412 AGIYNRTGQYNETVKLLSQLERPD---IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNL 487 (667)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 487 (667)
.--+.+.|+..+|.-.|+...+.| ...|--|.......++-..|+..+.+..+ +.|+ ......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhH
Confidence 334678888999998998877543 45677777777888888889999998887 4564 45677777788888888
Q ss_pred hhHHHHHHHHHHhCCCC----C---chhHHhHHHHHHHhcCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhCCChH
Q 005969 488 ALGSSLHGLIKKTEIIS----S---DTFVCNMLIDMYGKCGSIGSSVKIFNEMT-----DRNVITWTALISALGLNGFAQ 555 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~ 555 (667)
..|...+....+....- + +...-.. ..+.......+..++|-++. ++|......|.-.|--.|.++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88998888876553100 0 0000000 01111122334444444443 256777888888888999999
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHHHHH
Q 005969 556 RALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
+|+..|+..+. ++|+ ..+||-|...++...+..+|+..|++.. + ++|.- .+...|.-.|...|.+++|.+.|=
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-q--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-Q--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-h--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999998 5775 6699999999999999999999999883 3 67774 456678888999999999998764
Q ss_pred hC---C---------CCCCHHHHHHHHHHHHhcCChhHHhhh
Q 005969 634 TM---P---------FPPNALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 634 ~m---~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+. . -.++...|.+|-.++...++.+....+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 43 1 223567999999888888888755544
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.15 E-value=4.5e-05 Score=62.94 Aligned_cols=91 Identities=15% Similarity=-0.037 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
+..+...+...|++++|...|++.... .| +...|..+..++...|++++|...|++.... -+.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 334455555666666666666666553 33 3445566666666666666666666666322 334455566666666
Q ss_pred hhcCChHHHHHHHHhC
Q 005969 620 VRYGHLKEAEKIITTM 635 (667)
Q Consensus 620 ~~~g~~~~A~~~~~~m 635 (667)
.+.|++++|.+.+++.
T Consensus 103 ~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 103 KMMGEPGLAREAFQTA 118 (144)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666655
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0052 Score=59.45 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=67.8
Q ss_pred cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC--CCc-hhHHHHHHHHHhCCChHHHH
Q 005969 50 CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--KSL-VTWNSIVSIFGKHGFVEDCM 126 (667)
Q Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~ 126 (667)
|..++++.|...|-+.+... |+|-..|+.-..+|++.|++++|.+=-.+-.+ |+. ..|+-...++.-.|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 55567888888888887766 66777788888888888888877765554443 442 36777777777788888888
Q ss_pred HHHHHHHHCCCcCChhhHHHHHHHh
Q 005969 127 FLFCELVRSEVALTESSFVGVIHGL 151 (667)
Q Consensus 127 ~~~~~m~~~~~~~~~~~~~~li~~~ 151 (667)
.-|.+-++.. +-+...+.-+..+.
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8887766643 22334455555554
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.6e-06 Score=49.45 Aligned_cols=34 Identities=41% Similarity=0.597 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD 470 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 470 (667)
.+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.14 E-value=0.00025 Score=75.71 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=96.6
Q ss_pred CCChhHHhhHHHHhhccCChhHHHHhhccCCC--------CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhh
Q 005969 72 CADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--------KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESS 143 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 143 (667)
|.+...|...|......++.++|++++++... .-...|.++++.-..-|.-+...++|+++.+.- -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 45555566666666666666666666655432 112255555555555555556666666655421 11223
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCCh
Q 005969 144 FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENF 223 (667)
Q Consensus 144 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 223 (667)
|..|...|.+....++|-++++.|.+.=- -.. ..|...+..+.++.+-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~-------------------------------~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR-------------------------------KVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh-------------------------------hHHHHHHHHHhcccHH
Confidence 44455555555555555555555544311 233 3455555555555555
Q ss_pred hHHHHHHHHhHhCCcCCChhh---HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 005969 224 GKALELYLRMSVDIVFPNQTT---FVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCF 300 (667)
Q Consensus 224 ~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 300 (667)
+.|..++.+..+. -|.... ..-.+..-.+.|+.+.++.+|+.....-++ ....|+..++.-.++|+.+.++.+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHH
Confidence 5555555444432 222111 111111223445555555555555544322 3445555566666666666666666
Q ss_pred hccCC
Q 005969 301 SEISN 305 (667)
Q Consensus 301 ~~~~~ 305 (667)
+++..
T Consensus 1658 eRvi~ 1662 (1710)
T KOG1070|consen 1658 ERVIE 1662 (1710)
T ss_pred HHHHh
Confidence 55544
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.13 E-value=0.0064 Score=55.26 Aligned_cols=90 Identities=10% Similarity=-0.033 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChhHHHHhhccCCCCCchhHHHHH---HHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHH-HHhhccC
Q 005969 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTII---GALAESENFGKALELYLRMSVDIVFPNQTTFVYVI-NSCAGLQ 256 (667)
Q Consensus 181 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~ 256 (667)
-+...+...|++..|+.-|....+-|...|.++. ..|...|+...|+.=+.+..+. +||-..-..-= ..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444555556666666666666655555555543 2455556666666555555542 45532221111 1144556
Q ss_pred ChhHHHHHHHHHHHhc
Q 005969 257 NSILGKSIHAKVIKNA 272 (667)
Q Consensus 257 ~~~~a~~~~~~~~~~~ 272 (667)
.++.|..=|+...++.
T Consensus 121 ele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE 136 (504)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 6666666666665553
No 128
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.2e-06 Score=48.40 Aligned_cols=34 Identities=32% Similarity=0.667 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP 469 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 469 (667)
+.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999887
No 129
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.006 Score=59.05 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=125.7
Q ss_pred HHHHHhhcCChhHHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHH
Q 005969 411 IAGIYNRTGQYNETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVS-------LLSAC 481 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------ll~~~ 481 (667)
+.+...+..+++.+++-+....+ .+..-++....+|...|.+..+...-.+..+.|-. ...-|+. +-.++
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 44444555555555555554432 23333455556666666666665555555544421 1112222 22345
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChh-hHHHHHHHHHhCCChHHHH
Q 005969 482 SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVI-TWTALISALGLNGFAQRAL 558 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~A~ 558 (667)
.+.++.+.+...+++.......| + + ..+....+++....+... .|... -...-...+.+.|++..|+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~-~--~-------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTP-D--L-------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCH-H--H-------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 55566666777666655443222 1 1 112223333333333222 23221 1222266778889999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHHHHHHhCC-
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAEKIITTMP- 636 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~- 636 (667)
..|.++++.. +-|...|..-.-+|.+.|.+..|+.=.+...+. .|+ ...|..=..++.-..++++|.+.|++-.
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998873 336778999999999999999988877666333 232 2223333334444457888888887773
Q ss_pred CCCCHHHHHHHHHHHHh
Q 005969 637 FPPNALIWRTFLEGCQR 653 (667)
Q Consensus 637 ~~p~~~~~~~l~~~~~~ 653 (667)
..|+..-+..-+.-|..
T Consensus 455 ~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred cCchhHHHHHHHHHHHH
Confidence 56665555444444444
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.07 E-value=0.0012 Score=69.88 Aligned_cols=235 Identities=10% Similarity=0.049 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcC
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNG 450 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 450 (667)
...+..|+..+...+++++|.++.+.. ..|.....|-.....+.+.++.+++..+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 345568899999999999999999876 4444555555555566666666555443 3344444445
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
++..+..+...|.+. .-+...+..+..+|-+.|+.+++..+++++.+.. |.++...|.+...|... +.++|.+++
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 555555555556552 3344577788888888888888888888888886 55788888888888888 888888887
Q ss_pred HhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-------------------CCCCCHhHHHHHHHHHhccCCHHH
Q 005969 531 NEMTDRNVITWTALISALGLNGFAQRALEKFREMEFL-------------------GFKPDRVALIAVLTACRHGGLVRE 591 (667)
Q Consensus 531 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------------g~~p~~~~~~~li~~~~~~g~~~~ 591 (667)
.... ..+...+++..+.++|.++... |..--..++-.+-..|-...++++
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 7643 2244455556666666665553 111122233444455666777888
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHHhh-cCChHHHHHHHHhCCCC
Q 005969 592 GMELFERMNRSYGVEPEMDHYHCVVDLLVR-YGHLKEAEKIITTMPFP 638 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~ 638 (667)
+..+++.+.+- -+-|......++.+|.. -++.....+.+..-.+.
T Consensus 242 ~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~ 287 (906)
T PRK14720 242 VIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIG 287 (906)
T ss_pred HHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHHHHhccc
Confidence 88888877432 33345556666666652 23333344444433333
No 131
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.017 Score=57.76 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEF-LGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
...|-+|.+--...|.++.|++.--.+.+ ..+-|....|+.|.-+-|..+.+...-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34444555555667888888776544443 235666777877766656555555444444444
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=0.0005 Score=60.21 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=95.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH-HHhcCC--hHH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM-YGKCGS--IGS 525 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~ 525 (667)
.++.+++...++...+.. +.|...|..+...|...|+.+.|...++...+.. |.+...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777766643 5567788888888889999999999999888875 4477888888876 466676 489
Q ss_pred HHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 526 SVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 526 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
|.+++++..+ | +...+..+...+...|++++|+..|+++.+. .+|+..-+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 9999988873 3 5668888888889999999999999999886 35554433
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.95 E-value=0.00036 Score=57.63 Aligned_cols=88 Identities=11% Similarity=-0.048 Sum_probs=50.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRH 585 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~ 585 (667)
+..+...+...|++++|...|+.... | +...|..+..++...|++++|+..|++.... .| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 33445555555666666665555442 2 3445555566666666666666666666653 33 34555666666666
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.|++++|...|+..
T Consensus 105 ~g~~~eAi~~~~~A 118 (144)
T PRK15359 105 MGEPGLAREAFQTA 118 (144)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666655
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.0016 Score=62.17 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
...+.+.|+.++|.+.++++... .|+ ....-.+..++.+.|++.+|..+++...... |.|+..|..|..+|...|
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhC
Confidence 33444445555555555544442 233 2233333444444444444444444444432 334444444555555444
Q ss_pred ChHHHH
Q 005969 522 SIGSSV 527 (667)
Q Consensus 522 ~~~~A~ 527 (667)
+..++.
T Consensus 423 ~~~~a~ 428 (484)
T COG4783 423 NRAEAL 428 (484)
T ss_pred chHHHH
Confidence 444443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0051 Score=53.51 Aligned_cols=185 Identities=12% Similarity=0.132 Sum_probs=127.8
Q ss_pred cCChhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 449 NGDYKEVLELFKYMRA---AR-IYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
..+.++..+++.++.. .| ..|+.. .|..++-+....|+.+.|...++.+.+.- |.+...-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4467777777777653 23 556655 45556666777888888888888887764 32333333334445667889
Q ss_pred HHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 524 GSSVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 524 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
++|.++++.+.+. |..++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999988743 4455665566667778877888888887775 66788899999999999999999999999885
Q ss_pred HhhCCCCC-cchhHHHHHHHhhcC---ChHHHHHHHHhC-CCCC
Q 005969 601 RSYGVEPE-MDHYHCVVDLLVRYG---HLKEAEKIITTM-PFPP 639 (667)
Q Consensus 601 ~~~~~~~~-~~~~~~l~~~~~~~g---~~~~A~~~~~~m-~~~p 639 (667)
-. .|. +-.+..+.+.+.-.| +.+-|.+.+.+. .+.|
T Consensus 182 l~---~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LI---QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred Hc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 33 444 344456666655444 566677777766 3444
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.025 Score=54.97 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RNVITWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~ 561 (667)
.+.....++++....... -..+|..+++.-.+...+..|..+|.++.+ .++...++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455556666665554333 355788889998999999999999999884 277788999988885 6788899999
Q ss_pred HHHHHcCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc--chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 562 REMEFLGFKPDRVA-LIAVLTACRHGGLVREGMELFERMNRSYGVEPEM--DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 562 ~~~~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+--.+. -+|... -...+..+...++-..|..+|++...+ ++.|+. .+|..+++-=..-|++..+.++-+++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 987764 445443 366777888889999999999999766 666664 78999999999999999999888776
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=0.0028 Score=60.68 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=107.8
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-hhhHHHHHHHHHhCCChHHH
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-VITWTALISALGLNGFAQRA 557 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A 557 (667)
+...|+.+.|+..+..+.+.. |.|+.......+.+.+.++.++|.+.++.+. .|+ ...+-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 345678888888888877763 5577777777888888888888888888877 455 34555667888888888888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-
Q 005969 558 LEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP- 636 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~- 636 (667)
+.+++..... .+-|+..|..|.++|...|+..+|....-+. +...|++++|...+....
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG-------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-------------------HHhCCCHHHHHHHHHHHHH
Confidence 8888887775 3556778888888888888887776665433 445777888877776652
Q ss_pred ----CCCCHHHHHHHHHHHHhc
Q 005969 637 ----FPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 637 ----~~p~~~~~~~l~~~~~~~ 654 (667)
..|+..=++..|......
T Consensus 454 ~~~~~~~~~aR~dari~~~~~~ 475 (484)
T COG4783 454 QVKLGFPDWARADARIDQLRQQ 475 (484)
T ss_pred hccCCcHHHHHHHHHHHHHHHH
Confidence 334444445555554443
No 138
>PLN02789 farnesyltranstransferase
Probab=97.88 E-value=0.011 Score=55.91 Aligned_cols=44 Identities=5% Similarity=-0.011 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
.+..+.+.+.+.. |.+..+|+....++...|+++++++.++.+.
T Consensus 126 ~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 126 KELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444332 2244444444444444444444444444444
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.87 E-value=0.0011 Score=69.32 Aligned_cols=142 Identities=5% Similarity=-0.052 Sum_probs=108.6
Q ss_pred CCCChhHHhhHHHHhhccCChhHHHHhhccCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHH
Q 005969 71 FCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--KS-LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGV 147 (667)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 147 (667)
++.++..+-.|..+..+.|+.++|..+++...+ |+ ......+..++.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 567788888888888899999999999988764 54 4466778888899999999999999988754 2244455666
Q ss_pred HHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHH
Q 005969 148 IHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTII 214 (667)
Q Consensus 148 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 214 (667)
..++...|+.++|..+|+.+.. ..+-+..++..+...+-+.|+.++|...|+... .+....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6777788999999999999888 334457788888888888899888888888765 24445555444
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.2e-05 Score=44.84 Aligned_cols=31 Identities=45% Similarity=0.756 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGF 37 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 37 (667)
.+||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999874
No 141
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.0015 Score=68.55 Aligned_cols=129 Identities=5% Similarity=0.032 Sum_probs=73.0
Q ss_pred CCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005969 402 PRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSL 477 (667)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 477 (667)
+.+...+..+..+..+.|.+++|+.+++...+ |+ ......+...+.+.+++++|+..+++..+. .|+ ......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 33455555566666666666666666666553 22 233444555566666666666666666553 233 3344445
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
..++.+.|+.++|..+|+++...+ |.+...+..+...+...|+.++|...|+...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555556666666666666666532 2245566666666666666666666666554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00054 Score=66.01 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=89.5
Q ss_pred HHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 005969 414 IYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSL 493 (667)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (667)
.+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+......+.+.++.+.|..+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33444555555557777776666666677888888888888888888887642 34566666666778888888999999
Q ss_pred HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 494 HGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
.+++.+.. |.+..+|..|...|...|+++.|+..++.+.
T Consensus 257 Ak~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 257 AKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 98888874 5567788889999999999999998888776
No 143
>PLN02789 farnesyltranstransferase
Probab=97.81 E-value=0.0084 Score=56.78 Aligned_cols=205 Identities=11% Similarity=0.040 Sum_probs=134.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcC-ChhHHHHHHhcCCC---CCcchHHHHHHHHHHcC
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTG-QYNETVKLLSQLER---PDIVSWNIVIAACAHNG 450 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 450 (667)
+.+-..+...++.++|+..+..+ ..|.+...++....++...+ ++++++..++++.+ .+..+|+..-..+.+.|
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 34555667788999999999888 55666667777777777777 57899999888764 33345655544555566
Q ss_pred Ch--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc---CCh--
Q 005969 451 DY--KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC---GSI-- 523 (667)
Q Consensus 451 ~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-- 523 (667)
+. ++++.+++++.+.. +-|..+|.....++...|+++.+++.++++.+.+. .+...|+.....+.+. |+.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhccccccccc
Confidence 53 67889998998754 34667888888888889999999999999999863 3666776666555443 222
Q ss_pred --HHHHHHHHhcC--CC-ChhhHHHHHHHHHhC----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 524 --GSSVKIFNEMT--DR-NVITWTALISALGLN----GFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 524 --~~A~~~~~~~~--~~-~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
++.......+. .| |...|+-+...+... ++..+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34444443333 23 555666666666552 23345666666655531 2234455666666654
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.77 E-value=0.00078 Score=55.30 Aligned_cols=89 Identities=9% Similarity=-0.038 Sum_probs=38.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCC
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNG 552 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 552 (667)
.+...+...|+.+.|.+.++.+...+ |.++..+..+...+...|++++|...++...+ .+...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 33344444455555555554444432 22344444444444444444444444443321 12233333344444444
Q ss_pred ChHHHHHHHHHHHH
Q 005969 553 FAQRALEKFREMEF 566 (667)
Q Consensus 553 ~~~~A~~~~~~~~~ 566 (667)
+.++|+..|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444444
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.7e-05 Score=43.85 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARI 467 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 467 (667)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888888764
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.00082 Score=55.77 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=51.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
+...+...|++++|...|+........|+ ......|...+...|++++|+..++.. .. -...+..+....+++.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~--~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PD--EAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cC--cchHHHHHHHHHHHHHH
Confidence 34556666777777777777766542222 123344566666677777777776554 22 12233455566677777
Q ss_pred cCChHHHHHHHHh
Q 005969 622 YGHLKEAEKIITT 634 (667)
Q Consensus 622 ~g~~~~A~~~~~~ 634 (667)
.|+.++|.+.|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777766654
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.74 E-value=0.00051 Score=56.41 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=42.2
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
.....+...+...|++++|.+.|+.+.+ | +...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3344444444555555555555544431 2 33344444444555555555555555544431 223334444444455
Q ss_pred ccCCHHHHHHHHHHh
Q 005969 585 HGGLVREGMELFERM 599 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~ 599 (667)
..|++++|...|+..
T Consensus 97 ~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 97 ALGEPESALKALDLA 111 (135)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555444
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0015 Score=54.19 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc--chhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM--DHYH 613 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 613 (667)
.|..++..+ ..++...+...++.+.+. .|+. ...-.+...+...|++++|...|+.+... ...|+. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 455555555 478899999999999886 3432 24445667889999999999999999665 322221 2445
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 614 CVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
.|...+...|++++|+..++... .......+......+.+.|+.+.|..+.+++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67888999999999999998874 2334556667778899999999999988764
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.0006 Score=65.98 Aligned_cols=116 Identities=10% Similarity=0.081 Sum_probs=73.5
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC-C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-R-----NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
+......+++......+++++..++-+... | -..|..++++.|.+.|..++++++++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 445555666666666666667666665552 2 1234556777777777777777777777777777777777777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 580 LTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
++.+.+.|++..|.++...|+.+ +...+..++.--+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 77777777777777777766544 5555555555444444444
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.00078 Score=50.40 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=66.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCc-CCChhhHHHHHHHhhccC--------ChhHHHHHHHHHHHhcCCCCchHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIV-FPNQTTFVYVINSCAGLQ--------NSILGKSIHAKVIKNALECDVFVG 280 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 280 (667)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777999999999999999999 999999999999976553 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 005969 281 SALVDFYAK 289 (667)
Q Consensus 281 ~~li~~~~~ 289 (667)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0011 Score=49.55 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-cCChhhHHHHHHHhcccC--------chHHHHHHHHHHHHhcCCCchHHH
Q 005969 109 WNSIVSIFGKHGFVEDCMFLFCELVRSEV-ALTESSFVGVIHGLSNEQ--------DLEFGEQIHGLVIKNGFDYELLVA 179 (667)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 179 (667)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999998887532 345678899999999999999999
Q ss_pred HHHHHHHHh
Q 005969 180 NSLVNMYFQ 188 (667)
Q Consensus 180 ~~l~~~~~~ 188 (667)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.0011 Score=64.29 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 005969 208 VSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFY 287 (667)
Q Consensus 208 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (667)
.+..++++.|.+.|..+++++++..=..-|+-||.+||+.++..+.+.|++..|.++...|...+...+..++..-+.+|
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34568899999999999999999998889999999999999999999999999999999998888777777776666666
Q ss_pred Hhc
Q 005969 288 AKC 290 (667)
Q Consensus 288 ~~~ 290 (667)
.+.
T Consensus 184 ~~~ 186 (429)
T PF10037_consen 184 YKY 186 (429)
T ss_pred HHh
Confidence 555
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.029 Score=55.61 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CChh-----------hHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD--RNVI-----------TWTALISALGLNGFAQRALEKFREMEFLG 568 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~~~~~~A~~~~~~~~~~g 568 (667)
+++.....++|++|..+-+...+ |++. -|...-.+|.+.|+..+|.++++++....
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 34444555555555555554442 2221 22223456677778888888888776543
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.12 Score=48.88 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=62.4
Q ss_pred hhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 407 PANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344445555555566666666666666777777777777777777666554322 1123556666677776676
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
..+|..+...+ + + ..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~------~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI------P-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC------C-h----HHHHHHHHHCCCHHHHHHH
Confidence 66666666551 1 1 3345666666666666544
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00032 Score=51.65 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHH
Q 005969 551 NGFAQRALEKFREMEFLGF-KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 628 (667)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|..+++.. +. .| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~---~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KL---DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-TH---HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CC---CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5778888888888887532 123445555788888888888888888773 22 22 234444567888888888888
Q ss_pred HHHHHh
Q 005969 629 EKIITT 634 (667)
Q Consensus 629 ~~~~~~ 634 (667)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.38 E-value=0.0071 Score=56.79 Aligned_cols=163 Identities=9% Similarity=0.049 Sum_probs=94.9
Q ss_pred ChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhc-CChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhC
Q 005969 486 NLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKC-GSIGSSVKIFNEMTD-----RN----VITWTALISALGLN 551 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 551 (667)
+++.|.+.++...+. |....-...+..+...|... |++++|.+.|+...+ .. ...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 666666666554432 21111234555666677777 788888888877652 12 23556677888999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-----Hh-HHHHHHHHHhccCCHHHHHHHHHHhHHh-hCCCCC--cchhHHHHHHHhhc
Q 005969 552 GFAQRALEKFREMEFLGFKPD-----RV-ALIAVLTACRHGGLVREGMELFERMNRS-YGVEPE--MDHYHCVVDLLVRY 622 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~-----~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~~ 622 (667)
|++++|.++|++....-...+ .. .|...+-++...||+..|.+.+++.... .++..+ ......|+.++-..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999999877432221 11 2333344566789999999999987433 123333 24466677776542
Q ss_pred --CChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005969 623 --GHLKEAEKIITTMPFPPNALIWRTFLE 649 (667)
Q Consensus 623 --g~~~~A~~~~~~m~~~p~~~~~~~l~~ 649 (667)
..+++|..-|+.+. +.|..--..|+.
T Consensus 249 D~e~f~~av~~~d~~~-~ld~w~~~~l~~ 276 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS-RLDNWKTKMLLK 276 (282)
T ss_dssp -CCCHHHHCHHHTTSS----HHHHHHHHH
T ss_pred CHHHHHHHHHHHcccC-ccHHHHHHHHHH
Confidence 35777777788776 555555444443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.38 E-value=0.0046 Score=49.31 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC-CCcchhHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVE-PEMDHYHCV 615 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l 615 (667)
+..+...+...|++++|.+.|+++.+. .|+ ...+..+..++.+.|+++.|...++.+.....-. .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344555556666666666666666553 222 2344556666666666666666666664331111 113445555
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005969 616 VDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m 635 (667)
..++.+.|+.++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 66666666666666666665
No 158
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.24 Score=50.65 Aligned_cols=334 Identities=14% Similarity=0.068 Sum_probs=175.8
Q ss_pred HHCCCcCChhhHHH-----HHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---hhHHHHhhccCCC
Q 005969 133 VRSEVALTESSFVG-----VIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG---IWSAEKMFKDVEI 204 (667)
Q Consensus 133 ~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 204 (667)
..-|++.+..-|.. +|..+...+.+..|.++-..+...-... ..+|......+++..+ -+-+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35677777766655 5677777888888888877765332222 5677777777776532 2333444444444
Q ss_pred --CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc----CCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch
Q 005969 205 --RDVVSWNTIIGALAESENFGKALELYLRMSVDIV----FPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF 278 (667)
Q Consensus 205 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 278 (667)
....+|..+.......|+++-|..+++.=...+- -.+..-+...+.-+...|+.+...+++-++.+.-.. .
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~---s 579 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR---S 579 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---H
Confidence 4667888888888889999999988765322221 112333455566666677777766666665543110 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC-CCcccHHHHHHHHhcCCChHHHHHH--HHHH----HcCCCCCHhhHHHHHHH
Q 005969 279 VGSALVDFYAKCDNLEGAHLCFSEISN-KNIVSWNALILGYASKSSPTSIFLL--IELL----QLGYRPNEFTFSHVLRS 351 (667)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~a~~~~--~~m~----~~~~~~~~~~~~~~l~~ 351 (667)
.+.. ...+...|..+|.++-+ .|..+ +-..|-...+..++..+ +... ..|..|+..+
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~------- 643 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT------- 643 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhhchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH-------
Confidence 1111 11122223333332211 11100 01111111112222111 1100 0122222221
Q ss_pred hhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCC----------HHHHHHHHHhc----CCCCCcchhHHHHHHHhh
Q 005969 352 SLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGL----------ISDALAFVTAL----NIPRAVVPANIIAGIYNR 417 (667)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~ 417 (667)
..+.+.+... ..+-+++.+.+ +......+.+-.+.-+..
T Consensus 644 ---------------------------~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~ 696 (829)
T KOG2280|consen 644 ---------------------------AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLIL 696 (829)
T ss_pred ---------------------------HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHH
Confidence 2222222222 11111222222 333444555666666777
Q ss_pred cCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005969 418 TGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
.|+-.+|.++-.+.+-||-..|..=+.+++..+++++-+++-+.++. +.-|..+..+|.+.|+.++|..++.++
T Consensus 697 ~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred ccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 77777777777777777777777777777777777776665544431 344666777777777777777766543
Q ss_pred HHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 498 KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
... . ..+.+|.+.|++.+|.++
T Consensus 771 ~~l-------~---ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 771 GGL-------Q---EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred CCh-------H---HHHHHHHHhccHHHHHHH
Confidence 211 1 456667777777666554
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.0053 Score=48.95 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=57.5
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD--RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIA 578 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~ 578 (667)
++..++..+.+.|++++|.+.|+.+.+ |+ ...+..+...+...|+++.|...|+++... .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 344555556666666666666666542 22 224455667777777777777777777663 232 345666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 005969 579 VLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+..++...|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 666777777777777777777444
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.28 E-value=0.0027 Score=48.08 Aligned_cols=91 Identities=18% Similarity=0.071 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 344555555666666666666665531 222345555566666666666666666665332 22233455566666666
Q ss_pred cCChHHHHHHHHhC
Q 005969 622 YGHLKEAEKIITTM 635 (667)
Q Consensus 622 ~g~~~~A~~~~~~m 635 (667)
.|++++|.+.+.+.
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666666544
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.18 Score=47.73 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=92.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL 588 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 588 (667)
+.+.-+.-+...|+...|.++-.+..=|+-.-|...+.+++..+++++-.++... +-.+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4444566667788888999998888888888999999999999999877765432 2345778889999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005969 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~ 654 (667)
..+|..+..++ .+..-+..|.++|++.+|.+...+.+ |......+..-|-.+
T Consensus 253 ~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 253 KKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCC
Confidence 99998887763 12456778888999999888876654 344444444444333
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.26 E-value=0.025 Score=56.12 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=53.6
Q ss_pred hcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcch
Q 005969 532 EMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDH 611 (667)
Q Consensus 532 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (667)
++...+..+...+...+.+...+.-|-++|.+|-+. .++++.....++|++|..+-++. - .+.|| +
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h-P--e~~~d--V 806 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH-P--EFKDD--V 806 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC-c--ccccc--c
Confidence 333334444544555555555666777777776542 45667777788888887776644 1 23333 3
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 612 YHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
|.....-++...++++|.+.|-+.+
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhc
Confidence 4445555666666777666666553
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.018 Score=50.19 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=109.7
Q ss_pred cCChHHHHHHHHHHHHC---C-CCCCchhHhH-hh-c-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCCh
Q 005969 19 CGYVEDALRMFLYMINR---G-FEPTQFTFGG-LL-S-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCL 91 (667)
Q Consensus 19 ~~~~~~a~~~~~~m~~~---~-~~p~~~~~~~-ll-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 91 (667)
..+.++.+++++.++.. | ..|+..+... ++ . ...++.+.|...++++..+ +|.+..+-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 35666777777666653 3 3344433222 21 2 3444666777777666544 344443333333334556777
Q ss_pred hHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHH
Q 005969 92 DEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVI 168 (667)
Q Consensus 92 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 168 (667)
++|.++++.+.+ .|.++|---+...-..|+-.+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777764 24556666666666667777777777766654 45677777777777777788887777777776
Q ss_pred HhcCCCchHHHHHHHHHHHhcC---ChhHHHHhhccCCCCCc
Q 005969 169 KNGFDYELLVANSLVNMYFQCA---GIWSAEKMFKDVEIRDV 207 (667)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 207 (667)
-.. |.++-.+..+.+.+...| +...|.+.|.+..+-+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 553 234444455555555444 34556777766654333
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0032 Score=53.73 Aligned_cols=89 Identities=18% Similarity=0.339 Sum_probs=60.1
Q ss_pred CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc----------------CCHHHHH
Q 005969 535 DRNVITWTALISALGL-----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHG----------------GLVREGM 593 (667)
Q Consensus 535 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~----------------g~~~~A~ 593 (667)
..+-.+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666666677777777777777777777776442 2235578
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 594 ELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
+++++| +.+|+.||.+++..|+..+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 888888 666888888888888888877664
No 165
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.043 Score=48.14 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=147.2
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHh--hc-cCCc-cchhhHHH-HHHHHHhCCCCCChhHHhh
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGL--LS-CDSL-NPVEGAQL-QASVLKNGLFCADAFVGTA 80 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--l~-~~~~-~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 80 (667)
...|+.-+.++.+-+.+.+|..-++.+.+-. .||- .|... +. -..+ -+.-+.++ +..+... .|++ +++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~---lgnp--qes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQY---LGNP--QES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHh---cCCc--HHH
Confidence 4456666778888888888887777666532 1221 11111 11 2333 23333333 3333332 2333 366
Q ss_pred HHHHhhccCChhHHHHhhccCCCC----------CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRK----------SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHG 150 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 150 (667)
|.+.+.-..-+++.+..|+.-..| -...-+.+++.+.-.|.+.-....+.+.++...+.++...+.|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 666666665566666665543322 1234456777777788888888888888887767788888888888
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHhcCChhHHHHhhccCCCC---CchhHHHHHHHHHccCC
Q 005969 151 LSNEQDLEFGEQIHGLVIKNGFDYELL-----VANSLVNMYFQCAGIWSAEKMFKDVEIR---DVVSWNTIIGALAESEN 222 (667)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 222 (667)
-.+.||.+.|...++.+.+..-..+.. +.......|.-.+++.+|.+.|.+++.. |+..-|.-.-.+.-.|+
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 889999999999999887654444433 3334444566677888888888777643 44445544445556688
Q ss_pred hhHHHHHHHHhHhCCcCCChhhHHHHH
Q 005969 223 FGKALELYLRMSVDIVFPNQTTFVYVI 249 (667)
Q Consensus 223 ~~~a~~~~~~m~~~g~~p~~~t~~~ll 249 (667)
..+|++.++.|.+. .|...+-++++
T Consensus 302 l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHhcc--CCccchhhhHH
Confidence 88899988888875 45555544444
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0017 Score=60.65 Aligned_cols=142 Identities=11% Similarity=0.006 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh-cCChHHHHHHHHhcCC---CChhhHHHHHHH
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK-CGSIGSSVKIFNEMTD---RNVITWTALISA 547 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~---~~~~~~~~li~~ 547 (667)
.+|..+++..-+.+..+.|..+|.++.+.+.. +...|......-.+ .++.+.|.++|+...+ .+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999865433 34445444444233 4667779999998773 577788888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDR---VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++... .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 88999999999999998875 34433 47888888888889999999998888443 44455555555554
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.17 E-value=0.079 Score=49.79 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC---chh
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYP-----DNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISS---DTF 508 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 508 (667)
.+..+...+.+.|++++|.++|++....-... +.. .+-..+-++...|+...|.+.++........-. ...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34456677788888888888888876643221 111 122223344556777788887777765431111 123
Q ss_pred HHhHHHHHHHhc--CChHHHHHHHHhcCCCChhhHHHH
Q 005969 509 VCNMLIDMYGKC--GSIGSSVKIFNEMTDRNVITWTAL 544 (667)
Q Consensus 509 ~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~l 544 (667)
....|+.++-.. ..+++|..-|+.+.+.|...-..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 445556655442 246666666666666555443333
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.16 E-value=0.17 Score=47.37 Aligned_cols=246 Identities=13% Similarity=0.062 Sum_probs=146.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCchhH--hHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhH
Q 005969 18 RCGYVEDALRMFLYMINRGFEPTQFTF--GGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDE 93 (667)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 93 (667)
-.|++++|..-|+.|.. .|..... ..|.- -..+..+.|++.-+...+.- +--.+...+++...+..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHH
Confidence 35888888888888876 2333221 11111 22336677777777766654 5556777788888888888888
Q ss_pred HHHhhccCC-----CCCch--hHHHHHHHHH---hCCChHHHHHHHHHHHHCCCcCChhhH-HHHHHHhcccCchHHHHH
Q 005969 94 VVSVFEDMP-----RKSLV--TWNSIVSIFG---KHGFVEDCMFLFCELVRSEVALTESSF-VGVIHGLSNEQDLEFGEQ 162 (667)
Q Consensus 94 a~~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~ 162 (667)
|+++++.-. +++.. .-..|+.+-+ -..+...|...-.+..+ +.||...- ..-.+++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888877543 23332 1222332211 12344455554444433 44554432 233467778888888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCChhHH----HHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCc
Q 005969 163 IHGLVIKNGFDYELLVANSLVNMYFQCAGIWSA----EKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
+++.+-+...+|+.. ++..+.+.|+.... .+-++.|...+..+--.+..+-...|++..|..--+.... .
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 888888776666542 22334455553222 2334566666777777777777788887777665444433 3
Q ss_pred CCChhhHHHHHHH-hhccCChhHHHHHHHHHHHhcCCCC
Q 005969 239 FPNQTTFVYVINS-CAGLQNSILGKSIHAKVIKNALECD 276 (667)
Q Consensus 239 ~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 276 (667)
.|....|..|... -...|+-.++.+.+.+.++.--+|+
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 6777777777666 4455777777777777776654443
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.0043 Score=53.00 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=72.7
Q ss_pred HhhccC--CCCCchhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC-------------
Q 005969 96 SVFEDM--PRKSLVTWNSIVSIFGK-----HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ------------- 155 (667)
Q Consensus 96 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------------- 155 (667)
+.|+.. ..++-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 34566777777777764 4677777778888888999999999999988886422
Q ss_pred ---chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 005969 156 ---DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG 191 (667)
Q Consensus 156 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (667)
+.+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788999999999999999999999888865543
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.12 E-value=0.0073 Score=58.66 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=49.7
Q ss_pred HHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~ 590 (667)
..+...|++++|...|+++.+ | +...|..+..+|...|++++|+..++++.+. .| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 444555666666666666552 2 3445555566666666666666666666663 33 3445566666666666666
Q ss_pred HHHHHHHHhH
Q 005969 591 EGMELFERMN 600 (667)
Q Consensus 591 ~A~~~~~~~~ 600 (667)
+|...|++..
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.11 E-value=0.015 Score=47.46 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=73.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+....-.+...+...|++++|.++|+-+. +| +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34444455666677888888888888765 44 45567778888888888888888888888853 2357788888888
Q ss_pred HhccCCHHHHHHHHHHhHHhhC
Q 005969 583 CRHGGLVREGMELFERMNRSYG 604 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~ 604 (667)
+...|+.+.|.+.|+..+...+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhc
Confidence 8888888888888887755533
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.08 E-value=0.013 Score=45.88 Aligned_cols=107 Identities=20% Similarity=0.156 Sum_probs=71.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLV 620 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 620 (667)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886665 34677788888899999999999998865521111 2222333445667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005969 621 RYGHLKEAEKIITTMPFPPNALIWRTFLEGC 651 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~ 651 (667)
..|+.++|++.+-..- .++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8899999988775432 23333444444443
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.002 Score=45.08 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHH
Q 005969 586 GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWR 645 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~ 645 (667)
.|++++|.++|+++... .+-+......+..+|.+.|++++|.++++++. ..|+...|.
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555555555333 22244444445555555555555555555552 344433333
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.06 E-value=0.0013 Score=48.34 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=39.1
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 449 NGDYKEVLELFKYMRAARIY-PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
.|+++.|+.+++++.+.... |+...+-.+..++.+.|+.++|..+++. .+.+ +.+....-.+..++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666554321 1233333455566666666666666655 2111 112233334455555556666665
Q ss_pred HHHH
Q 005969 528 KIFN 531 (667)
Q Consensus 528 ~~~~ 531 (667)
++|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.04 E-value=0.016 Score=49.78 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD--NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|+.+.|...+++..+.. |.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34566677777888999999999988876543222 3567777888888899999999888888764 3356666677
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
...|...|+...+..-++... ..+++|.+++++.... .|+. |..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 777777776555443222211 1246666777666653 3433 444444444433
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.99 E-value=0.0088 Score=45.15 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 344455555666666666666665532 2223444445555555566666666665555543 2233344444444555
Q ss_pred cCChHHHHHHHHh
Q 005969 520 CGSIGSSVKIFNE 532 (667)
Q Consensus 520 ~~~~~~A~~~~~~ 532 (667)
.|+.++|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555444443
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.97 E-value=0.018 Score=46.96 Aligned_cols=104 Identities=9% Similarity=-0.005 Sum_probs=81.9
Q ss_pred HHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 528 KIFNEMT-DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 528 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
..+..+. +.+....-.+..-+...|++++|..+|+-+.. +.|. ..-|..|.-+|-..|++++|+..|.... ...
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~- 99 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK- 99 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-
Confidence 3444444 44444555566777899999999999999988 4675 4566777778888999999999999884 423
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+-++..+-.+..++...|+.+.|.+.|+..
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567788999999999999999999998866
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.18 Score=41.99 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C---ChhhH
Q 005969 467 IYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R---NVITW 541 (667)
Q Consensus 467 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~ 541 (667)
..|+...--.|..+....|+..+|...+++...--. ..|....-.+.++....+++..|...++.+.+ | .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 345555555566666666666666666666544322 22555655666666666666666666665542 1 22233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
-.+...+...|...+|..-|+...+ .-|+...-......+.+.|+.++|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3455666666666667666666666 3555444333444556666666655554444
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.95 E-value=0.0088 Score=55.87 Aligned_cols=141 Identities=17% Similarity=0.170 Sum_probs=99.8
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHH---HHHH-HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTA---LISA-LGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~-~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
.+|..++...-+.+..+.|..+|.+..+....+|.. .... +...++.+.|..+|+...+. +..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 467788888888999999999999888543333333 2222 22356677799999999886 566777888889999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHH
Q 005969 584 RHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFLE 649 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~ 649 (667)
.+.++.+.|..+|++.+....-.. ...+|..+++.=.+.|+.+.+.++.+++. ..|+......+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999865522222 23588899999899999999999998884 4555444444443
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.93 E-value=0.018 Score=49.43 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=45.5
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIA 578 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ 578 (667)
....+..+...+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++..+. .|+ ...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344555566666666666666666665541 21 235555566666666666666666666653 332 334455
Q ss_pred HHHHHhccCC
Q 005969 579 VLTACRHGGL 588 (667)
Q Consensus 579 li~~~~~~g~ 588 (667)
+...+...|+
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 5555555555
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.92 E-value=0.71 Score=48.43 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=35.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCchhH---hHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHH
Q 005969 18 RCGYVEDALRMFLYMINRGFEPTQFTF---GGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEV 94 (667)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..+++..|+....++..+ .|+.... .++...+.+..++|..+++.....+ ..|..+...+-..|...|..++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHH
Confidence 345555565555555553 2222211 1111122234444444444444333 22444445555555555555555
Q ss_pred HHhhccCC
Q 005969 95 VSVFEDMP 102 (667)
Q Consensus 95 ~~~~~~~~ 102 (667)
..++++..
T Consensus 97 ~~~Ye~~~ 104 (932)
T KOG2053|consen 97 VHLYERAN 104 (932)
T ss_pred HHHHHHHH
Confidence 55555443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.037 Score=43.41 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=65.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-CchhHHhHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDN--YTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNMLIDMYG 518 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 518 (667)
+..++-..|+.++|+.+|++....|+.... ..+-.+...+...|++++|..+++......... -+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666788888888888888888765542 345556667778888888888888777653110 01222223334556
Q ss_pred hcCChHHHHHHHHhcCCCChhhHHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTDRNVITWTALISAL 548 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 548 (667)
..|+.++|.+.+-...-++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776666554434443444444333
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.87 E-value=0.032 Score=56.84 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCcchHHHHHHHHHH--cC---ChhHHHHHHHHHHHcCCCCCH
Q 005969 434 PDIVSWNIVIAACAH--NG---DYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 434 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~ 471 (667)
.+...|...+.+... .+ +...|..+|++..+. .|+.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~ 375 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDF 375 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCc
Confidence 455666666666433 22 256777888887773 4654
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.85 E-value=0.49 Score=45.50 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=42.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
+..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|++++..+ ||+..+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHH
Confidence 4567788887776666666 6888888888887778888888888887654 56655554
No 185
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.80 E-value=0.024 Score=55.13 Aligned_cols=89 Identities=9% Similarity=-0.040 Sum_probs=64.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
...+...|++++|+..|++..+.. +-+...|..+..++.+.|+++.|...++.+.+.. |.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 344566788888888888887743 3345566677777778888888888888777764 4456677777777777888
Q ss_pred hHHHHHHHHhcC
Q 005969 523 IGSSVKIFNEMT 534 (667)
Q Consensus 523 ~~~A~~~~~~~~ 534 (667)
+++|...|+...
T Consensus 86 ~~eA~~~~~~al 97 (356)
T PLN03088 86 YQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHH
Confidence 888887777766
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.76 E-value=0.077 Score=54.15 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC--------ChHHHHHHHHh
Q 005969 466 RIYPDNYTFVSLLSACSKL-----CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG--------SIGSSVKIFNE 532 (667)
Q Consensus 466 g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~ 532 (667)
+.+.+...|...+++.... ++...|..+|+++.+.. |.....+..+..+|.... +...+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456778888888874332 33668888888888874 434555555444332221 12233333333
Q ss_pred cC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 533 MT-----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 533 ~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.. ..+...|.++.-.....|++++|...+++..+. .|+...|..+...+...|++++|.+.+++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 123345555555555567777777777777764 456666777777777777777777777655
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.014 Score=52.48 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A 592 (667)
..+.+++.+|+..|.+..+ .|.+-|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 3445556666666655542 2445555555666666666666665555555 3444 23566666666666666666
Q ss_pred HHHHHHhHHhhCCCCCcchhH
Q 005969 593 MELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~ 613 (667)
.+.|++. ..+.|+-.+|.
T Consensus 169 ~~aykKa---LeldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKA---LELDPDNESYK 186 (304)
T ss_pred HHHHHhh---hccCCCcHHHH
Confidence 6665543 23455555443
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.72 E-value=0.026 Score=48.23 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...+++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444455555555544443211111 124444444445555555555555444
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.71 E-value=0.26 Score=44.85 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=99.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-H---HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY-T---FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
....+...|++++|...|+++... .|+.. . .-.+..++.+.++.+.|...++...+.....|+.. +...+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHH
Confidence 344556678888888888888774 33332 2 23455667788888888888888887754443322 22222222
Q ss_pred Hh--cC---------------ChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 518 GK--CG---------------SIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 518 ~~--~~---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
+. .+ +...+.+.+ ..+..++.-|-...-..+|...+..+... .-..- ..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~~ia 182 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-LSVA 182 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-HHHH
Confidence 11 10 111111111 12333444444444444554444443321 00111 2455
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+.|.+.|.+..|..-++.+++.+.-.| .......++.+|...|..++|.++...+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 667888888888888888876643222 2345667778888888888888776544
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.63 E-value=0.05 Score=46.51 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYP--DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++...+.. |.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHH
Confidence 345566666677788888888888876543222 12366667777777788888887777776653 32344455555
Q ss_pred HHHH
Q 005969 515 DMYG 518 (667)
Q Consensus 515 ~~~~ 518 (667)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.61 E-value=0.006 Score=42.64 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=39.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 549 GLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
...|++++|+++|+++... .| +...+..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578888888888888875 44 5667777888888888888888888887544
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.51 E-value=0.037 Score=46.02 Aligned_cols=73 Identities=23% Similarity=0.253 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH----HhhCCCCCcchhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMN----RSYGVEPEMDHYH 613 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~ 613 (667)
....++..+...|++++|+.+++++.... +.|...|..+|.+|...|+...|.+.|+++. +..|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45566777888999999999999998852 3467799999999999999999999998873 3468888876543
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.49 E-value=0.63 Score=43.60 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHHHc--------CCCCCH-----HHHHHHHHHHhccCChh---hHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 451 DYKEVLELFKYMRAA--------RIYPDN-----YTFVSLLSACSKLCNLA---LGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~--------g~~p~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
+++.|..++++..+- ...|+. .++..++.++...+..+ +|..+++.+...... .+.++-.-+
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l 128 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKL 128 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHH
Confidence 676666666554322 233443 46777888888877654 455566666555432 355565667
Q ss_pred HHHHhcCChHHHHHHHHhcCC-C--ChhhHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHh-HH----HHHHHHHh
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD-R--NVITWTALISALGL--NGFAQRALEKFREMEFLGFKPDRV-AL----IAVLTACR 584 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~g~~p~~~-~~----~~li~~~~ 584 (667)
..+.+.++.+++.+.+.+|.. . ....+...+..+.. ......|...++.+....+.|... .. -..+....
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~ 208 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTT 208 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHc
Confidence 777778899999999998873 2 33456666555522 233456777777776655666553 11 11111222
Q ss_pred ccCC------HHHHHHHHHHhHHhhCCCCCcchhHHHHHH-------HhhcCChHHHHHHHH
Q 005969 585 HGGL------VREGMELFERMNRSYGVEPEMDHYHCVVDL-------LVRYGHLKEAEKIIT 633 (667)
Q Consensus 585 ~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~g~~~~A~~~~~ 633 (667)
..++ .+...+++..+.+..+.+.+..+-.++... +.+.+++++|.++++
T Consensus 209 ~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 209 QSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred CCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 2222 555666666554555666666554444333 456788999998886
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.47 E-value=0.051 Score=50.97 Aligned_cols=127 Identities=13% Similarity=0.023 Sum_probs=77.0
Q ss_pred HHHHHHHHHhccCChhhHHHHHHH----HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-------CC--Chh
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGL----IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-------DR--NVI 539 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~ 539 (667)
.|..|-+.|.-.|+++.|+...+. ..+-|........+..+.+.+.-.|+++.|.+.|+... +. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555566777777766543 22333222234566677777777788887777776433 22 223
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH----cC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF----LG-FKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+.-+|.+.|.-..++++|+.++.+-.. .+ ..-....+.+|..+|...|..+.|+.+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455667777777777788777766432 11 1123456777888888888888877776644
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.47 E-value=0.33 Score=40.46 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=95.7
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHH
Q 005969 505 SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD---RVALI 577 (667)
Q Consensus 505 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~ 577 (667)
|+...--.|..+..+.|+..+|...|++... .|....-.+.++....++...|...++.+.+. .|+ +.+.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 3677777888999999999999999998763 47777777888888899999999999998884 343 34566
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHH
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
.+.+.+...|++.+|..-|+... + .-|+...-......+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~-~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI-S--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH-H--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77888999999999999999873 3 4566666666667777888777665433
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.38 E-value=0.037 Score=43.90 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=61.7
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHG 586 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 586 (667)
..++..++.++++.|+.+....+++..-..++.. -...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666666666666666666665443221110 000000 111233567778888888888888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 587 GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
|++..|.++++...+.++++.+..+|..|++-....
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 888888888888888888777777777777665443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.22 Score=43.92 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH----
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI---- 514 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---- 514 (667)
.+.++..+...|.+.-....+++.++..-+-++.....|.+.-.+.|+.+.|...|+...+..... +....+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhh
Confidence 345555555667777778888888876656677777777777888888888888888776654333 333333333
Q ss_pred -HHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 515 -DMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 515 -~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
..|.-.+++..|...+.++.. .++...|.-.-+..-.|+..+|++..+.|... .|.+.+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 334455667777777776663 24444444333444457778888888888774 4544433
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.04 Score=49.62 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=45.2
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN---VITWTALISALGLNGFAQRALE 559 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~ 559 (667)
+.+++.+|...|....+.. |.|+..|..-..+|.+.|.++.|++-.+....-| ..+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444555555555544442 3344444455555555555555555444444222 2345555555555555555555
Q ss_pred HHHHHHHcCCCCCHhHHH
Q 005969 560 KFREMEFLGFKPDRVALI 577 (667)
Q Consensus 560 ~~~~~~~~g~~p~~~~~~ 577 (667)
.|++.++ +.|+-.+|.
T Consensus 171 aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHhhhc--cCCCcHHHH
Confidence 5555555 455544443
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.33 E-value=0.031 Score=44.34 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=48.1
Q ss_pred hhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChh
Q 005969 602 SYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM----PFPPNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~ 658 (667)
.....|+..+..+++.+|+..|++..|+++++.+ +++-+..+|..|++=+...-+.+
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 3467899999999999999999999999999887 46677999999998877665543
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=1.5 Score=44.65 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=66.9
Q ss_pred CCCchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCC--------hhHHhhHHHHhhccCChhHHHHhhccCCCCCch
Q 005969 38 EPTQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCAD--------AFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLV 107 (667)
Q Consensus 38 ~p~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 107 (667)
.|.+..|..+.. +.+...+.|+..|-+.-.-.+++.= .....+-+ -+--|++++|++++-++.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhhhh
Confidence 678888877666 4444777777766654332222110 01111112 22358999999999998877643
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC----hhhHHHHHHHhcccCchHHHHHHHHH
Q 005969 108 TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALT----ESSFVGVIHGLSNEQDLEFGEQIHGL 166 (667)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 166 (667)
|....+.|++-....+++. .|-..| ...++.+-..++....|+.|.+.+..
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777766665543 121111 23455555666666666666655543
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.30 E-value=0.02 Score=40.10 Aligned_cols=62 Identities=26% Similarity=0.217 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccC-CHHHHHHHHHHhH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGG-LVREGMELFERMN 600 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~~~ 600 (667)
+...|..+...+...|++++|+..|++..+. .|+ ...|..+..+|...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3456777788888888888888888888885 454 557777888888888 6888888887764
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.27 E-value=0.018 Score=39.72 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...+...|++++|++.|+++.+. .| +...+..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777777777777777775 35 3456677777777777777777777777443
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.26 E-value=0.051 Score=49.82 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcC
Q 005969 549 GLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYG 623 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 623 (667)
.+.|++++|+..|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.+.-.| ....+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4445666666666666653 3432 3445555666666666666666666644421111 1233334455555566
Q ss_pred ChHHHHHHHHhC
Q 005969 624 HLKEAEKIITTM 635 (667)
Q Consensus 624 ~~~~A~~~~~~m 635 (667)
+.++|.++++++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 666666666555
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.16 Score=46.10 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=67.0
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCC-CHhHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLN---GFAQRALEKFREMEFLGFKP-DRVAL 576 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~g~~p-~~~~~ 576 (667)
|.|...|-.|...|...|+.+.|..-|....+ ++...+..+..++... ....++..+|+++... .| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 55778888888888888888888888876653 4555555555554332 2356778888888774 45 45566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777778888888888888888544
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.18 E-value=1.3 Score=42.63 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
...|...+.+..+..-++.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...- +.++.-.+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3456667777777777899999999999988 6788889999998776 477888888888655542 32333334556
Q ss_pred HHHHhcCChHHHHHHHHhcCC---CC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD---RN--VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
..+.+.++-+.|..+|+...+ .+ ...|..+|..-..-|+...+..+-++|.. +-|...+-..+..-|.-
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 667788888999999986552 22 45788889888888999888888888877 46666555555555543
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.11 E-value=1.1 Score=40.95 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=41.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCcCChh-h---HHHHHHHhcccCchHHHHHHHHHHHHhcC
Q 005969 111 SIVSIFGKHGFVEDCMFLFCELVRSEVALTES-S---FVGVIHGLSNEQDLEFGEQIHGLVIKNGF 172 (667)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 172 (667)
.....+...|++++|++.|+.+...- |+.. . .-.+..++.+.++++.|...++...+...
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34455567889999999999887743 3332 2 13455666788888888888888877654
No 207
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.06 E-value=0.51 Score=36.86 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
.....+..+..+|+-+.-.+++..+.+. -++++...--+..+|.+.|+..++.+++.+..++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566777777777777777777653 3677777777888888888888888888777444 54
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.05 E-value=0.98 Score=43.39 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=80.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCC--CCchhHHhHHHHHHHh---cCChHHHHHHHHhcC----CCChhhHHHH
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEII--SSDTFVCNMLIDMYGK---CGSIGSSVKIFNEMT----DRNVITWTAL 544 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~----~~~~~~~~~l 544 (667)
...++-+|....+++...++.+.+...... +..+..-.....++.+ .|+.++|++++..+. .++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444577777777777777777665211 1122222334445555 677777777776632 2455667766
Q ss_pred HHHHHh----C-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH----HHHHHHHHh---HHhhCC---
Q 005969 545 ISALGL----N-----GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR----EGMELFERM---NRSYGV--- 605 (667)
Q Consensus 545 i~~~~~----~-----~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~~---~~~~~~--- 605 (667)
...|-. . ...++|++.|.+.-+. .||..+=-.++..+.-.|... +..++--.+ ..+.|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 666521 1 1255666666665552 344332111222222223211 222322111 111122
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
..+-+.+.+++.+..-.|+.++|.+..++|-
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2233445566666677777777777777777
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.83 E-value=0.027 Score=39.40 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=52.1
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC-ChHHHHHHHHhC
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG-HLKEAEKIITTM 635 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 635 (667)
++.+|..+...+...|++++|+..|++.++. .+-+...+..+..++.+.| ++++|.+.+++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4567888899999999999999999999665 3446678889999999999 799999988764
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.82 E-value=0.3 Score=43.18 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 445 ACAHNGDYKEVLELFKYMRAARIY--PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
.+...|++.+|...|+++...... --....-.++.++.+.|+.+.|...++...+.....|.. -+...+.+.+....
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHh
Confidence 344556666666666666554211 112234445555666666666666666665553222111 11111111111110
Q ss_pred hHHHHHHHHhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 005969 523 IGSSVKIFNEMTDR-------NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 523 ~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
..... ..+. -...+..++.-|-...-..+|...+..+.+. .-.. -..+.+.|.+.|.+..|..-
T Consensus 93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHH
T ss_pred Cccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHH
Confidence 11100 0011 1123445566666666666666655555441 1111 12356667888888888888
Q ss_pred HHHhHHhhCCCCC-cchhHHHHHHHhhcCChHHHH
Q 005969 596 FERMNRSYGVEPE-MDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 596 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 629 (667)
++.+++.+.-.+. ......++.++.+.|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888666222221 134566777777777766443
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.80 E-value=0.025 Score=38.97 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
+...+...|++++|.+.|+.+.+ | +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677777777777777663 3 3446666777777778888888888777763
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.80 E-value=0.14 Score=47.08 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC--CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD--RNV----ITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIA 578 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~ 578 (667)
.|...+..+.+.|++++|...|+.+.+ |+. ..+-.+...|...|++++|...|+.+.+. .|+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 344444444455666666666666552 332 24555667777777777777777777763 333 234444
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 005969 579 VLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...+...|++++|..+|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666777788888887777555
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.087 Score=47.16 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHC 614 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 614 (667)
.|+.-+..+ +.|++..|..-|...++. -|+ +..+-.|.+++...|++++|..+|..+.+.++-.|.. +.+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466666554 567799999999999886 343 3356678899999999999999999997776655554 77888
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 005969 615 VVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~m 635 (667)
|.....+.|+.++|...|++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 888999999999999998887
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.65 E-value=1.4 Score=38.87 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=26.0
Q ss_pred HhccCChhhHHHHHHHHHHhCCCC-CchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 481 CSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
+...|+++.|...|+.+....... -.....-.++.++.+.|++++|...++...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444556666666666655542211 122333444555556666666666555544
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.093 Score=47.64 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=58.1
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchh----HhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChh
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFT----FGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAF 76 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 76 (667)
|.|...|-.|..+|...|+..+|..-|....+. .|+..- |...+. -..+ ...++..++.++++.+ +.|+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHH
Confidence 567788999999999999999999999998874 222221 222222 1222 5555666666666555 44444
Q ss_pred HHhhHHHHhhccCChhHHHHhhccCC
Q 005969 77 VGTALLGLYGRHGCLDEVVSVFEDMP 102 (667)
Q Consensus 77 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 102 (667)
....|...+...|++.+|...++.|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444455555555555555555544
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.62 E-value=0.12 Score=48.72 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=93.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHH----HHhCCCCCc
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYM----RAARIYP-DNYTFVSLLSACSKLCNLALGSSLHGLI----KKTEIISSD 506 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~ 506 (667)
-..|..|-..|.-.|+++.|+..-+.- ++-|-+. ....+..+.+++.-.|+++.|.+.++.. .+.|.....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 345666777777788899887765442 2323222 2346777888888889999998887764 344433335
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC---------CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD---------RNVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
..+..+|.+.|.-..++++|+.++++-.. -....+-+|..+|...|..++|+.+.+.-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777889999988999999988875441 2456788899999999999999888777654
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.51 E-value=0.035 Score=40.04 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHh---hCC-CCC-cchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRS---YGV-EPE-MDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
+|+.+...|...|++++|+..+++..+- .|- .|. ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555544321 111 011 23455555555555555555555543
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.50 E-value=0.051 Score=38.50 Aligned_cols=54 Identities=20% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
..|.+.+++++|++.++++... .| +...+.....++.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456666777777777777664 33 344555666666677777777777776643
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.36 E-value=2.8 Score=40.37 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=84.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAAR---IYPDNYTFVSLLSACSK---LCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
.++-+|....+++..+++++.|.... +.-....-....-++.+ .|+.++|.+++..+......+ ++.++..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHH
Confidence 34445666666777777777666531 11111222223334444 667777777766644433223 666666666
Q ss_pred HHHHh---------cCChHHHHHHHHhcCCCChhhHH--HHHHHHHhCCC----hHHHHHHH---HH-HHHcCCCC---C
Q 005969 515 DMYGK---------CGSIGSSVKIFNEMTDRNVITWT--ALISALGLNGF----AQRALEKF---RE-MEFLGFKP---D 572 (667)
Q Consensus 515 ~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~----~~~A~~~~---~~-~~~~g~~p---~ 572 (667)
..|-. ....++|...|.+.-+-+...|+ .+...+...|. -.+..++- .. +.+.|... +
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 55432 12367777777766532222222 12222223332 22333333 11 22344332 3
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 573 RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
-.-+.+++.++.-.|++++|.+..++|.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4456778999999999999999999995
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.34 E-value=0.076 Score=44.13 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=51.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH-----HcCCCCCHhHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREME-----FLGFKPDRVALI 577 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~-----~~g~~p~~~~~~ 577 (667)
..+...++..+...|++++|.++.+.+. +| +...|..+|.+|...|+...|++.|+++. +.|+.|++.+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3456667778888899999999998887 34 66789999999999999999999998875 358899877543
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.29 E-value=0.035 Score=40.00 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc--CCC---CC-HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL--GFK---PD-RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666665432 011 11 3466677777777777777777777653
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.18 E-value=0.087 Score=37.28 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
..|.+.+++++|.++++.+...+ +.+...+......+.+.|+++.|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34566677777777777776642 2244455556666666777777777777666654
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.92 E-value=0.45 Score=48.20 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=91.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchh------HHhHHHHHHHh----cCChHHHHHHHHhcCC--CChhhHH
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTF------VCNMLIDMYGK----CGSIGSSVKIFNEMTD--RNVITWT 542 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~--~~~~~~~ 542 (667)
..++...+-.||-+.+.+.+....+.+... .+. .|...+..++. ....+.|.++++.+.+ |+...|.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344555555666677776666655543222 221 22222222222 3456778888887775 6665554
Q ss_pred HH-HHHHHhCCChHHHHHHHHHHHHcC--C-CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH-HH
Q 005969 543 AL-ISALGLNGFAQRALEKFREMEFLG--F-KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV-VD 617 (667)
Q Consensus 543 ~l-i~~~~~~~~~~~A~~~~~~~~~~g--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~ 617 (667)
.. .+.+...|++++|++.|++..... . +.....+.-+...+.-..+|++|.+.+..+.+.... +..+|..+ .-
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHH
Confidence 43 355566788888888888655311 1 112345666777778888888888888888554333 33344333 33
Q ss_pred HHhhcCCh-------HHHHHHHHhCC
Q 005969 618 LLVRYGHL-------KEAEKIITTMP 636 (667)
Q Consensus 618 ~~~~~g~~-------~~A~~~~~~m~ 636 (667)
++...|+. ++|.++|.+.+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33456666 77777777763
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.92 E-value=0.27 Score=43.94 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHhhccCC--CCCchhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC------------
Q 005969 95 VSVFEDMP--RKSLVTWNSIVSIFGK-----HGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ------------ 155 (667)
Q Consensus 95 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------------ 155 (667)
+..|...+ +++-.+|-+.+..|.. .+.++-....+..|.+.|+.-|..+|+.||..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 4566778878777764 3567777777888999999999999999998876533
Q ss_pred ----chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 005969 156 ----DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG 191 (667)
Q Consensus 156 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (667)
+-+-+..++++|...|+.||..+-..|++++.+.+.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999998877664
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=5.8 Score=41.17 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=86.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL 588 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 588 (667)
+.+--+.-+...|+..+|.++-.+.+=||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 444555667778999999999999999999999999999999999888766655532 25567778999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.++|.+++.+. .. +...+.+|.+.|++.+|.++.-+-
T Consensus 760 ~~EA~KYiprv-~~---------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 760 KDEAKKYIPRV-GG---------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHhhhhhcc-CC---------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 99999998766 21 115778889999999888776443
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.79 E-value=1.3 Score=34.70 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=76.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhcCChh
Q 005969 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV---ANSLVNMYFQCAGIW 193 (667)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 193 (667)
.-.|..++..+++.+...+ .+..-+|-+|.-....-+-+...++++.+ |--.|... .-.++..|+..|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc--
Confidence 3457777777777776553 23344454444443333444444444433 22222221 1234444444442
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 005969 194 SAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNAL 273 (667)
Q Consensus 194 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 273 (667)
+.......+..+..+|.-+.--+++..+.. .-.+++.....+..+|.+.|+..++..++.+..+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344566678888888998888888888765 3467777788888889999999999988888888875
Q ss_pred C
Q 005969 274 E 274 (667)
Q Consensus 274 ~ 274 (667)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.58 E-value=0.73 Score=44.97 Aligned_cols=64 Identities=9% Similarity=-0.054 Sum_probs=45.1
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNV----ITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
|.+...++.+..+|...|++++|...|++.. +|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4466677777777777777777777777655 3543 24677777777777777777777777764
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.58 E-value=0.32 Score=43.46 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=79.7
Q ss_pred HHhhccCC--CCCchhHHHHHHHHHcc-----CChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCC-----------
Q 005969 196 EKMFKDVE--IRDVVSWNTIIGALAES-----ENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQN----------- 257 (667)
Q Consensus 196 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------- 257 (667)
+..|.... ++|-.+|-..+..+... +..+-....++.|.+-|+.-|..+|+.|+..+-+-.-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 56777777777766543 5566677778889999999999999999988766432
Q ss_pred -----hhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh-HHHHHHHhccC
Q 005969 258 -----SILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL-EGAHLCFSEIS 304 (667)
Q Consensus 258 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~ 304 (667)
-+-+..++++|..+|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 345678999999999999999999999999877653 33444444443
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=94.28 E-value=0.37 Score=39.73 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=47.5
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGM 593 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (667)
+...|++++|..+|+-+. +| +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 344566666666666443 22 33444555555556666666666666655543 234445555666666666666666
Q ss_pred HHHHHhH
Q 005969 594 ELFERMN 600 (667)
Q Consensus 594 ~~~~~~~ 600 (667)
..|+...
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 6666653
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.17 E-value=1.3 Score=44.23 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=95.6
Q ss_pred HHHHhCCChHHHHHHHHH-HHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh
Q 005969 114 SIFGKHGFVEDCMFLFCE-LVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI 192 (667)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (667)
....-+|+++++.++... -.-..+ .....+.+++-+-+.|..+.|.++..+- ..-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 344556777776666641 111111 2444667777777777777777764432 1234556778999
Q ss_pred hHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 005969 193 WSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA 272 (667)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 272 (667)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.+.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988888776 556899999999999999999998887542 4555556666777777777776666555
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHhcc
Q 005969 273 LECDVFVGSALVDFYAKCDNLEGAHLCFSEI 303 (667)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (667)
- ++....++.-.|+.++..+++.+-
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3 244444555567777776665543
No 231
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.10 E-value=4.6 Score=42.79 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=33.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccC
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQ 256 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 256 (667)
.-=.+|-.|.+.|++++|.++..+... +.......|...+..+....
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 334678889999999999999866554 35666778888888887653
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.06 E-value=2 Score=35.25 Aligned_cols=125 Identities=16% Similarity=0.290 Sum_probs=82.7
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
....++..+...+.......+++.+.+ .+....+.++..|++.+ .++.++.++. .++......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 345677777777888888888887663 24557778888887653 3444555442 2334445567788888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY-GHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 653 (667)
.+.++++..++.++ .. +...+..+... ++.+.|.+++.+- .+...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~-~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKD-GN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhh-cC---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHHc
Confidence 88888888888766 22 33444444444 7888888888873 356788888777653
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=4 Score=36.08 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=44.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhc
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGR 87 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (667)
.|.-...+|....++++|...+.+..+. .+.+...|...= ..+.|..+.+++.+ ++.-+..+.--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAK-----ayEqaamLake~~k---lsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAK-----AYEQAAMLAKELSK---LSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHH-----HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 4555666777777888888777776642 233333332111 34444444444443 22334445555566666
Q ss_pred cCChhHHHHhhcc
Q 005969 88 HGCLDEVVSVFED 100 (667)
Q Consensus 88 ~g~~~~a~~~~~~ 100 (667)
+|.++.|-..+++
T Consensus 104 ~GspdtAAmaleK 116 (308)
T KOG1585|consen 104 CGSPDTAAMALEK 116 (308)
T ss_pred hCCcchHHHHHHH
Confidence 6766665555443
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.6 Score=44.41 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM-DHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 616 (667)
..++..+.-+|.+.+++..|++..++.+..+ ++|....-.=.++|...|+++.|+..|+.+.+ +.|+. .+-..|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence 3466677778888888888888888888753 44566666667788888888888888888843 34444 4445566
Q ss_pred HHHhhcCChHHH-HHHHHhC
Q 005969 617 DLLVRYGHLKEA-EKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A-~~~~~~m 635 (667)
.+-.+.....+. .++|..|
T Consensus 333 ~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 665555544433 5666666
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.77 E-value=0.81 Score=44.65 Aligned_cols=66 Identities=3% Similarity=-0.222 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch---hHHhHHHHHHHhcCChHHHHHHHHhcCCC
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT---FVCNMLIDMYGKCGSIGSSVKIFNEMTDR 536 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 536 (667)
.+...++.+..+|.+.|++++|...++...+.+ |.+. .+|..+..+|...|+.++|...+++..+-
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356688889999999999999999999988885 3233 45899999999999999999999987753
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=1.4 Score=38.67 Aligned_cols=56 Identities=7% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHh--hCCCCCcchhHHHHHHHhhcCChHHHHHHH
Q 005969 576 LIAVLTACRHGGLVREGMELFERMNRS--YGVEPEMDHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
|...|-.+.-..|+..|...++.-... +.-+-+..+...|+.+|- .|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 444455555566666666666653222 122223445666666654 56666665554
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.72 E-value=6.1 Score=37.04 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCHHHHH---HHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-C--CcchHHHHHHHHHH
Q 005969 377 GSLMTSYAKSGLISDAL---AFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-P--DIVSWNIVIAACAH 448 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~---~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~ 448 (667)
..++.+|...+..+... ++++.+ ..+..+..+..-+.++.+.++.+++.+.+.+|.. . ....+...+..+..
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 36777777776665444 444444 3344455555666666667777777777777663 1 33445555555422
Q ss_pred --cCChhHHHHHHHHHHHcCCCCCH
Q 005969 449 --NGDYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 449 --~g~~~~A~~~~~~m~~~g~~p~~ 471 (667)
......|...+..+....+.|..
T Consensus 168 l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 168 LAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 22345566666665555455544
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=93.59 E-value=2 Score=35.62 Aligned_cols=98 Identities=8% Similarity=-0.004 Sum_probs=73.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
..-+-..|++++|..+|+-+.-.+ .-|..-+..|..+|-..+.+++|...|... -..+ .-|+..+-....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A-~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVA-FTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcc-cCCCCccchHHHHHHHhCC
Confidence 344567899999999999998843 224455666777777899999999999977 3323 3556667778999999999
Q ss_pred hHHHHHHHHhCCCCCCHHHHH
Q 005969 625 LKEAEKIITTMPFPPNALIWR 645 (667)
Q Consensus 625 ~~~A~~~~~~m~~~p~~~~~~ 645 (667)
.+.|.+.|+.....|......
T Consensus 121 ~~~A~~~f~~a~~~~~~~~l~ 141 (165)
T PRK15331 121 AAKARQCFELVNERTEDESLR 141 (165)
T ss_pred HHHHHHHHHHHHhCcchHHHH
Confidence 999999998885556544443
No 239
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=7.4 Score=37.41 Aligned_cols=152 Identities=13% Similarity=-0.022 Sum_probs=79.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCChhhHHHHHHHHHHhCCCCCchhHHhHH----------
Q 005969 446 CAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA--CSKLCNLALGSSLHGLIKKTEIISSDTFVCNML---------- 513 (667)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---------- 513 (667)
+.-.|++++|.+.--...+.. + ...+...+++ +--.++.+.+...|++..+.+....+..+....
T Consensus 179 l~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 344566666666655544421 1 1123333333 223455666666666665554221111111111
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhc
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTD-------RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRH 585 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~ 585 (667)
.+-..+.|++..|.+.+.+... ++...|.....+..+.|+..+|+.-.++..+ +.|. ...|..-..++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 2233456777777777777662 2334555555666677777777777766655 2332 1133333444555
Q ss_pred cCCHHHHHHHHHHhHHh
Q 005969 586 GGLVREGMELFERMNRS 602 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~ 602 (667)
.++|++|.+-++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67777777777766433
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.49 E-value=2.2 Score=42.76 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHH
Q 005969 376 LGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEV 455 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 455 (667)
.+.++..+.+.|..+.|+++-+. -..-.+...+.|+.+.|.++.+... +...|..|.....+.|+++-|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 46788888888999999885432 2445566677888888888777765 556888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 456 LELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 456 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
++.|.+..+ +..|+-.|.-.|+.+...++.+.....|. ++....++.-.|+.++..+++.+..
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 888877654 45566667777777777777777666551 3444455555677777666665543
No 241
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=12 Score=39.29 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CCCC---CcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCCh
Q 005969 380 MTSYAKSGLISDALAFVTAL-NIPR---AVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDY 452 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 452 (667)
++-+.+.+.+++|++..+.. +.++ .......++..+...|++++|-...-.|...+..-|.--+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 45566778888888877776 4444 2334566777777788888777776666655555555555555444443
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.36 E-value=4.3 Score=36.38 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=11.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRA 464 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~ 464 (667)
++.++-+.++++.|+..+++...
T Consensus 77 l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 77 LAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.32 E-value=16 Score=40.53 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=42.6
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchH---HHHHHHHHHcCChhHHH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSW---NIVIAACAHNGDYKEVL 456 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~ 456 (667)
.-+|.+.|+.++|++ +|..+|+|.+|..+..++..+-.... ..|+..+...+++-+|-
T Consensus 959 al~Ye~~GklekAl~-------------------a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALK-------------------AYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHHHHhccHHHHHH-------------------HHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 345667777777776 44467777777777777765433333 45666666677777777
Q ss_pred HHHHHHHH
Q 005969 457 ELFKYMRA 464 (667)
Q Consensus 457 ~~~~~m~~ 464 (667)
++..+..+
T Consensus 1020 ~il~e~~s 1027 (1265)
T KOG1920|consen 1020 KILLEYLS 1027 (1265)
T ss_pred HHHHHHhc
Confidence 76666543
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.29 E-value=5.1 Score=40.82 Aligned_cols=158 Identities=14% Similarity=0.075 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCch
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPDN-----YTFVSLLSACSK----LCNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
.+..++....=.||-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.+.++++.+.+.- | +.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P-~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--P-NS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--C-Cc
Confidence 34445555556677777777777654432 22111 234444444433 346677888888888763 3 54
Q ss_pred hHHhH-HHHHHHhcCChHHHHHHHHhcCC-------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 508 FVCNM-LIDMYGKCGSIGSSVKIFNEMTD-------RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 508 ~~~~~-l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
..|.. -.+.+...|++++|.+.|+.... -....+--+...+....++++|.+.|.++.+.. .-...+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 44433 34566677888888888886552 122345556777788889999999999998842 3344455555
Q ss_pred HHHH-hccCCH-------HHHHHHHHHh
Q 005969 580 LTAC-RHGGLV-------REGMELFERM 599 (667)
Q Consensus 580 i~~~-~~~g~~-------~~A~~~~~~~ 599 (667)
..+| ...|+. ++|.+++.+.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 4443 456777 7888888776
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.23 E-value=1.6 Score=37.43 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRV--ALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.+..+...|++.|+.++|++.|.++.+....|... .+-.+|+.....|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455566666666666666666666554344322 4455566666666666666666655
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.94 E-value=3.7 Score=35.53 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=95.4
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChh--HH
Q 005969 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAF--VG 78 (667)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 78 (667)
-|.-+..||.|.--+...|+++.|.+.|+...+-...-+-...|.-|+ +..+++..|.+-+......+ +.|+. .|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D--~~DPfR~LW 172 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD--PNDPFRSLW 172 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC--CCChHHHHH
Confidence 355677899999999999999999999999999766666667777777 66669999999999888887 44443 33
Q ss_pred hhHHHHhhccCChhHHHHhhc-cCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCC------cCChhhHHHHHHHh
Q 005969 79 TALLGLYGRHGCLDEVVSVFE-DMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEV------ALTESSFVGVIHGL 151 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~li~~~ 151 (667)
..+. -+.-++.+|..-+. +....+..-|...|-.|.- |++. ...++++.....- ..-..||--+.+.+
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 3222 12345666655443 3333343444333322221 1111 1223333332110 01123455555556
Q ss_pred cccCchHHHHHHHHHHHHh
Q 005969 152 SNEQDLEFGEQIHGLVIKN 170 (667)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~ 170 (667)
...|+.++|..+|+..+..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 6666666666666655544
No 247
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.94 E-value=4.9 Score=33.69 Aligned_cols=52 Identities=6% Similarity=-0.024 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIE 332 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~ 332 (667)
..+++.+...|++-+|.++.+....-+......++.+..+.++.. -..+++-
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666777777777877777665544445556666666666655 3344443
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=16 Score=38.80 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=73.7
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCc
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV---TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQD 156 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 156 (667)
.-+..+.+...++-|+.+.+.-..+... ....-..-+-+.|++++|..-|-+-+.. +.| ..+|+-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 4455566666777777776654432211 1222233455678899888777665432 122 346666677777
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 157 LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
+..--..++.+.+.|+. +..--+.|+.+|.+.++.++-.++.+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 77777778888888765 33444677888888888888777776665
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.59 E-value=9.3 Score=35.98 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----ChhhHHHHHHHHHHhCC
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSK--LC----NLALGSSLHGLIKKTEI 502 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~ 502 (667)
+++.+.+++.|.+.|++-+..+|-+....... .. ...++..+++.|++...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 44567778888888888777666553332222 11 23456666777766643
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.58 E-value=5 Score=32.85 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
...++..+...+.+.....+++.+...+ ..+....+.++..|++.+ .....+.++. . . +.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~-~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---S-NHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---c-ccCCHHHHHHHHH
Confidence 3445566666666777777777766655 345556666666666542 2222233221 1 1 2223333455555
Q ss_pred hcCChHHHHHHHHhcC
Q 005969 519 KCGSIGSSVKIFNEMT 534 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~ 534 (667)
+.+.++++.-++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 81 KAKLYEEAVELYKKDG 96 (140)
T ss_pred HcCcHHHHHHHHHhhc
Confidence 5555555555555543
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=2.2 Score=40.81 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
++..+..++.+.+++..|+..-++....+ ++|...+-.--.++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44455555666666666666666655543 344444444555555566666666666666555
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.57 E-value=5.6 Score=33.38 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcch
Q 005969 328 FLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVP 407 (667)
Q Consensus 328 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 407 (667)
+.++.+.+.++.|+...+..+++.+...+.......+...++-+|.......+-.+... ...+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~--------------- 77 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQ--YPPA--------------- 77 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHcc--ChHH---------------
Confidence 34444555666666666665555555555555555555555444444333333222211 1111
Q ss_pred hHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 005969 408 ANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL 487 (667)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 487 (667)
..-+.+++.++. ..+..++..+...|++-+|+++.+..... +......++.+..+.+|.
T Consensus 78 -------------~Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 78 -------------YQLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD 136 (167)
T ss_pred -------------HHHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH
Confidence 122223333332 13445566667777777777777664221 122234566666666666
Q ss_pred hhHHHHHHHHHHhC
Q 005969 488 ALGSSLHGLIKKTE 501 (667)
Q Consensus 488 ~~a~~~~~~~~~~~ 501 (667)
..-..+++-..+.+
T Consensus 137 ~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 137 QLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666555543
No 253
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.45 E-value=0.22 Score=41.09 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHhcCCh
Q 005969 639 PNALIWRTFLEGCQRCRIA 657 (667)
Q Consensus 639 p~~~~~~~l~~~~~~~~~~ 657 (667)
++...|..++..|...+..
T Consensus 123 ~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SSSHHHHHHHHHHCTSTCT
T ss_pred CcHHHHHHHHHHHHhcCcc
Confidence 5678888888888777654
No 254
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.32 E-value=1.3 Score=36.64 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccC
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEIS 304 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~ 304 (667)
.+|.-+-.+.|++.+|.+.|..+.
T Consensus 171 EALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHH
Confidence 344444445555555555555544
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=12 Score=36.19 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=47.6
Q ss_pred HHHHhhCCHHHHHHHHHhc-CCCCC-----cchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHH---HHHHHcCC
Q 005969 381 TSYAKSGLISDALAFVTAL-NIPRA-----VVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVI---AACAHNGD 451 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~ 451 (667)
+-..+.|++..|.+.|.+. .+.|+ ...|.....+..+.|+.++|+.--+.....|..-...++ .++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888776 33332 333444555566666666666665555554443322222 22333566
Q ss_pred hhHHHHHHHHHHHc
Q 005969 452 YKEVLELFKYMRAA 465 (667)
Q Consensus 452 ~~~A~~~~~~m~~~ 465 (667)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666665543
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.10 E-value=1 Score=35.18 Aligned_cols=65 Identities=8% Similarity=-0.069 Sum_probs=32.8
Q ss_pred CCChhHHhhHHHHhhccCChhHHHHhhccCCC----CCchh---HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005969 72 CADAFVGTALLGLYGRHGCLDEVVSVFEDMPR----KSLVT---WNSIVSIFGKHGFVEDCMFLFCELVRSE 136 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~ 136 (667)
|...+.||.-.+++--+|+.++|+.=+++..+ ++... |..-...|...|+.+.|..-|+..-+.|
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 45555566666666666666666555554332 11122 2222223445566666666666555544
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.97 E-value=6.4 Score=43.27 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhC--CHHHHHHHHHh
Q 005969 376 LGSLMTSYAKSG--LISDALAFVTA 398 (667)
Q Consensus 376 ~~~l~~~~~~~~--~~~~a~~~~~~ 398 (667)
.-.++..|.+.+ .+++++....+
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~ 817 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKE 817 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555555555 45555554443
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.56 E-value=2.3 Score=33.29 Aligned_cols=87 Identities=20% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc--chhHHHHHHHhhcCC
Q 005969 547 ALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM--DHYHCVVDLLVRYGH 624 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 624 (667)
++...|+.+.|++.|.+.... .+-+...||.-..++.-.|+.++|+.=+++..+-.|-+-.. ..|..=...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555556666665555553 12245555555555555566555555555554332322111 112222333444555
Q ss_pred hHHHHHHHHh
Q 005969 625 LKEAEKIITT 634 (667)
Q Consensus 625 ~~~A~~~~~~ 634 (667)
.+.|..=|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 5555544443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.56 E-value=5.3 Score=39.50 Aligned_cols=80 Identities=10% Similarity=0.238 Sum_probs=48.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPN--ALIWRTFLEGCQ 652 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~l~~~~~ 652 (667)
..|..++-+.|+.++|.+.+++|.+.+.......+...|+.++...+.+.++..++.+.. + -|. ...|+..+-.++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555666777777777777776553322234456677777777777777777777764 1 222 345555554555
Q ss_pred hcCC
Q 005969 653 RCRI 656 (667)
Q Consensus 653 ~~~~ 656 (667)
+-||
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 5554
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=11 Score=34.63 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=90.0
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC-C---hhhHHHHHHHHHhCCChH
Q 005969 480 ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-N---VITWTALISALGLNGFAQ 555 (667)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~ 555 (667)
.....|+...+...|+...... +.+...--.+...|...|+.+.|..++..+... . ......-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4567788889999888887774 335667777889999999999999999988732 1 122222344444445555
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC
Q 005969 556 RALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG 623 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (667)
+...+-++.-. .| |...-..+...+...|+.++|.+.+-.+.++..-.-|...-..|++.+.--|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444444 56 5556667788888899999998887776555222334444455555554444
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.34 E-value=0.48 Score=29.30 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+..+...|...|++++|+++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=8 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=10.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHh
Q 005969 578 AVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|.-+-.+.|++.+|.++|..+
T Consensus 172 ALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHH
Confidence 3434444555555555555554
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.07 E-value=2 Score=39.44 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=49.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHhHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEF-----LGFKPDRVALIA 578 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 578 (667)
..++..++..+...|+.+.+...++++.+ | +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556666777777777777777776653 2 556777777777777777777777766654 466666665554
Q ss_pred HHHH
Q 005969 579 VLTA 582 (667)
Q Consensus 579 li~~ 582 (667)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=5.6 Score=36.97 Aligned_cols=187 Identities=12% Similarity=0.032 Sum_probs=120.0
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh-CC-CCCchhHHhHHHHHHHhcCChHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT-EI-ISSDTFVCNMLIDMYGKCGSIGS 525 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~ 525 (667)
..|+..+|-..++++.+. .+.|...+..-=.+|.-.|+.+.-...++++... +. .|-....-..+..++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467788888888888774 5667778888888888899888888888887755 21 11122333445556678899999
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 526 SVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFL---GFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 526 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|++.-++..+- |...-.++...+--.|+..++.++..+-... +.-.-...|....-.+...+.++.|+++|++=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99988887753 4455566777777788888888887765542 11112334555666677788999999999865
Q ss_pred HHhhCCCCCcch---hHHHHHHHhhcCChHHHHHHHHhC
Q 005969 600 NRSYGVEPEMDH---YHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 600 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+-..--+.|... |..+-....+...+.+-.++-+.+
T Consensus 274 i~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 274 IWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 444233334322 222333334444444444444444
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.80 E-value=0.71 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCch
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQF 42 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 42 (667)
.+|..+..+|.+.|++++|.++|++..+. .|+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 46788999999999999999999999986 44443
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.70 E-value=2.2 Score=39.23 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCCcchhH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR----SYGVEPEMDHYH 613 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ 613 (667)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567778899999999999999999999852 44788999999999999999999999998844 358888888776
Q ss_pred HHHHH
Q 005969 614 CVVDL 618 (667)
Q Consensus 614 ~l~~~ 618 (667)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.53 E-value=2.6 Score=38.08 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCC--C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC-HhHHHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTD--R----NVITWTALISALGLNGFAQRALEKFREMEFL-GFKPD-RVALIAVL 580 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p~-~~~~~~li 580 (667)
.|+.-+..| +.|++.+|...|....+ | ....+--|..++...|++++|..+|..+.+. +-.|. +..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444433 34456666666665552 2 1123444677777777777777777777664 11111 34566666
Q ss_pred HHHhccCCHHHHHHHHHHhHHh
Q 005969 581 TACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777788888888888887655
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.38 E-value=0.57 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
+|+.|...|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999654
No 269
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.82 E-value=31 Score=36.86 Aligned_cols=133 Identities=7% Similarity=-0.060 Sum_probs=69.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHH
Q 005969 17 SRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVV 95 (667)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 95 (667)
.+.|++..+..+-..+..... ..-..|..+.. +.....+ ++..-+.+..+.+.....-..-+..+++.++++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLMNQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccccCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 445666666665555543211 22223333333 3322333 333333333323444444455556667788888888
Q ss_pred HhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC
Q 005969 96 SVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ 155 (667)
Q Consensus 96 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 155 (667)
.++..- ..+...-.....+....|+.++|.+....+-..|. ..+.....++..+.+.|
T Consensus 120 ~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 120 AFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 744333 23445556667778888888888777777765553 23444445554444333
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.74 E-value=0.49 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHHhCCCCCChhHHhhHHHHhhccCChhHHH
Q 005969 62 QASVLKNGLFCADAFVGTALLGLYGRHGCLDEVV 95 (667)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 95 (667)
+++.++.. |.+...|+.|..+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 777788888888888888888875
No 271
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.59 E-value=5.3 Score=29.62 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=61.0
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|.-|-+.+...+ .....+-..-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+.+..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4566666666665554 2233333444567889999999999999999999999987755 46777787777787887
Q ss_pred HCCCcCChhhHH
Q 005969 134 RSEVALTESSFV 145 (667)
Q Consensus 134 ~~~~~~~~~~~~ 145 (667)
.+| .|....|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 776 34444443
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.58 E-value=0.89 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFRE 563 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~ 563 (667)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=89.36 E-value=8.8 Score=37.90 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=78.7
Q ss_pred CCCCc---ccH--HHHHHHHHh-----cCChHHHHHHHHHHHH-CCCCCCchhHhHhhc-c----------CCc-cchhh
Q 005969 2 PDRNV---VSF--NSIISAYSR-----CGYVEDALRMFLYMIN-RGFEPTQFTFGGLLS-C----------DSL-NPVEG 58 (667)
Q Consensus 2 ~~p~~---~~~--~~li~~~~~-----~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~-~----------~~~-~~~~a 58 (667)
|+.+. ..| ...+.+... ....+.|+.+|.+... ....|+-..-...++ | ... ...+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 44555 667 655555554 1234567888888882 234555443222222 1 111 45666
Q ss_pred HHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCC--CCCch-hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 59 AQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMP--RKSLV-TWNSIVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
.+..++..+.+ +.|+.....+..++.-.|+++.|...|++.. .||.. +|......+.-+|+.++|.+.+++..+
T Consensus 324 ~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 324 LELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 66777777766 6677776666666677777888888887754 35433 444444555667778888877777554
No 274
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.29 E-value=21 Score=34.23 Aligned_cols=210 Identities=16% Similarity=0.106 Sum_probs=113.2
Q ss_pred HhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC-----CCCcc--hHHHHHHHHHH---cCC
Q 005969 384 AKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE-----RPDIV--SWNIVIAACAH---NGD 451 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~ 451 (667)
-+.|..+.|.++-++. ..|.-.......+...+..|+|+.|+++++.-. +++.. .-..|+.+-.. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555554444 233333444555566666666666666665443 22221 11122222111 123
Q ss_pred hhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH----
Q 005969 452 YKEVLELFKYMRAARIYPDNYT-FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSS---- 526 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---- 526 (667)
...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+....| ... ++..+.+.|+....
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~ia--~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DIA--LLYVRARSGDTALDRLKR 317 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HHH--HHHHHhcCCCcHHHHHHH
Confidence 4444444443333 5566542 2233456777888888888888777765333 222 22233444442211
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHh
Q 005969 527 VKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR-HGGLVREGMELFERMNRS 602 (667)
Q Consensus 527 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~ 602 (667)
.+-++.|+..+..+.-.+..+-...|++..|..--+.... ..|....|..|.+.-. ..||-.++..++-+.++.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1234455555666666677777777777777666666655 4777777777776643 458888888877776543
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=20 Score=33.54 Aligned_cols=147 Identities=10% Similarity=-0.023 Sum_probs=102.9
Q ss_pred hhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChh
Q 005969 416 NRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN----YTFVSLLSACSKLCNLA 488 (667)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~ 488 (667)
.-.|+..+|-..++++.+ .|...++..-.+|.-.|+.+.-...+++.... ..||. ..-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666656666653 45667777778888899999888888888754 23443 23333444556788999
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC----C---hhhHHHHHHHHHhCCChHHHHHHH
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR----N---VITWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---~~~~~~li~~~~~~~~~~~A~~~~ 561 (667)
.|++.-++..+.+ +.|.....++...+...|+..++.+...+-... + ...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999888887765 447777788888899999999999988776631 1 123333444566778999999999
Q ss_pred HHHH
Q 005969 562 REME 565 (667)
Q Consensus 562 ~~~~ 565 (667)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.87 E-value=27 Score=34.90 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHH-Hh--hc
Q 005969 12 IISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLG-LY--GR 87 (667)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~ 87 (667)
++.-..+..+...-++.-.+..+ +.|+-.+...++. -......++.+++++..+.| ...++ .. ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAg---------E~~lg~s~~~~~ 242 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAEEEASTIVEAEELLRQAVKAG---------EASLGKSQFLQH 242 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcccccccCHHHHHHHHHHHHHHH---------HHhhchhhhhhc
Confidence 44455556666666666666665 3566655555665 23337899999999988877 11111 00 11
Q ss_pred cCChhHHHHhhccCCCCC----chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCc-CChhhHHHHHHHhcccCchHHHHH
Q 005969 88 HGCLDEVVSVFEDMPRKS----LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVA-LTESSFVGVIHGLSNEQDLEFGEQ 162 (667)
Q Consensus 88 ~g~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~ 162 (667)
.|.. .+.+..++ ..+-..+...+.+.|+.++|++.+.+|.+.... -.......|+.++...+.+.++..
T Consensus 243 ~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 1111 11112222 222234556667889999999999999764322 233356678888888888888888
Q ss_pred HHHHHHHhcCCC-chHHHHHHH
Q 005969 163 IHGLVIKNGFDY-ELLVANSLV 183 (667)
Q Consensus 163 ~~~~~~~~~~~~-~~~~~~~l~ 183 (667)
++....+...+. -...|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 888875443322 244555544
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.72 E-value=5.5 Score=37.46 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCC----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------CChh-hHH
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIIS----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------RNVI-TWT 542 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~-~~~ 542 (667)
.++-.++...+.++++.+.|+...+-.... .....+-.|...|.+..++++|.-+.....+ .|.. .|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345555666666777777766655432111 1234566666667777776665544433221 1211 122
Q ss_pred -----HHHHHHHhCCChHHHHHHHHHHHH----cCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 543 -----ALISALGLNGFAQRALEKFREMEF----LGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 543 -----~li~~~~~~~~~~~A~~~~~~~~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|.-++...|...+|.+..++..+ .|-.|- ......+.+.|...|+.+.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 233455666666666666666543 232221 224455666666677777766666655
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.05 E-value=41 Score=35.97 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHcCChhHHHHHHHHHHHcCC-CC-----CHHHHHHHHHH--HhccCChhhHHHHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARI-YP-----DNYTFVSLLSA--CSKLCNLALGSSLHG 495 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~-~p-----~~~~~~~ll~~--~~~~~~~~~a~~~~~ 495 (667)
+-.+++..|...+..|.+..- .| ....+..++.+ +-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346788888888888875421 11 12233333333 334588888888887
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.78 E-value=20 Score=32.16 Aligned_cols=51 Identities=25% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+...++.+.+...+.+..... .. ....+..+...+...++++.|...+...
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 334445555555555554431 11 2344444444555555555555555544
No 280
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.69 E-value=7 Score=35.87 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.++..+.-..++.+++.+++.+-.++|+......+..-|...|..+++.....|+..-...++++-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 444445555555555555555555555544332233344455555555555555555555554443
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.40 E-value=7.6 Score=33.30 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN--YTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
..+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888899999999999999998887555544 35667777888888888888887776655
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.34 E-value=37 Score=34.73 Aligned_cols=176 Identities=10% Similarity=0.006 Sum_probs=97.3
Q ss_pred hhHHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 005969 407 PANIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNIVIAACAHNGDYKEVLELFKYMRAARI--YPDNYTFVSLLSAC 481 (667)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~ 481 (667)
.+...+.--.+.|+.+.+.-+|++..-|-. ..|-..+.-....|+.+-|..++....+--. .|....+.+.+ +
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--E 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--H
Confidence 445556666677777777777777664332 2233333333344777777766665544322 22222222222 2
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH---HHHHhcCC--CChhhHHHHHH-----HHHhC
Q 005969 482 SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV---KIFNEMTD--RNVITWTALIS-----ALGLN 551 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~li~-----~~~~~ 551 (667)
-..|+...|..+++.+...- |.-...-.--+....+.|..+.+. .++....+ .+....+.+.- .+.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 34578888888888887764 312223333345556677777776 44433331 22222222221 12335
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6778888888888875 4556667777777765544
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.29 E-value=45 Score=35.67 Aligned_cols=84 Identities=19% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 214 IGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 214 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
...+.+.|++++|...|-+-... +.|. .++.-+.....+..--.+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34556778888888777654432 2222 2344455555555556667777777766 344447889999999999
Q ss_pred HHHHHHHhccC
Q 005969 294 EGAHLCFSEIS 304 (667)
Q Consensus 294 ~~a~~~~~~~~ 304 (667)
++-.++.+...
T Consensus 448 ~kL~efI~~~~ 458 (933)
T KOG2114|consen 448 EKLTEFISKCD 458 (933)
T ss_pred HHHHHHHhcCC
Confidence 88888877766
No 284
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=6 Score=36.40 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC-CChh-----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-RNVI-----TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
...+...++..-....+++++...+-.+.. |+.. +-...++-+ ..=++++++.++..=+.-|+-||..+++.+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHH
Confidence 344445555555555667777766665552 2110 111122222 223566777777777777888888888888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHh
Q 005969 580 LTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
++.+.+.+++.+|..+...|+.+
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888877777666443
No 285
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=42 Score=35.30 Aligned_cols=122 Identities=11% Similarity=-0.018 Sum_probs=77.5
Q ss_pred HHHhcCChHHHHHHHHhcCC-CChh----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD-RNVI----TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~-~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
++..-|+-++|..+.+++.. .|+. -.-++..+|+-.|+..-..+++.-.... +.-|..-+-.+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34455667788888888772 3332 1223456777777766666666555543 2334444555555667778888
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPP 639 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p 639 (667)
....+..-+.++++......+--.|.-+|+-.|. .+|..+++-|-..|
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDP 636 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcCh
Confidence 8888888886665555555555666667766664 78999999885333
No 286
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.13 E-value=35 Score=34.17 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHH
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALI 545 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 545 (667)
.|.....+++..+++...+.-.+.+..++...|. +...|..+++.|... ..+.-..+|+++.+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455556666666666666666666666666552 445566666666665 45555666665443 2333333444
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC---C---HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKP---D---RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p---~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
.-|-+ ++.+++..+|.+.... +-| + ...|.-|... -..+.+..+.+...+..+.|...-...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44433 5666666666665554 222 1 1123333321 13455666666666666656555555666666666
Q ss_pred hhcCChHHHHHHHHhC
Q 005969 620 VRYGHLKEAEKIITTM 635 (667)
Q Consensus 620 ~~~g~~~~A~~~~~~m 635 (667)
....++++|.+++..+
T Consensus 216 s~~eN~~eai~Ilk~i 231 (711)
T COG1747 216 SENENWTEAIRILKHI 231 (711)
T ss_pred ccccCHHHHHHHHHHH
Confidence 6666777777777655
No 287
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.07 E-value=25 Score=32.49 Aligned_cols=94 Identities=15% Similarity=0.043 Sum_probs=45.2
Q ss_pred HHHHcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhccCChh-hHHHHHHHHH---Hh-CCCCCchhHHhHHHH
Q 005969 445 ACAHNGDYKEVLELF----KYMRAARIYPDNYTFVSLLSACSKLCNLA-LGSSLHGLIK---KT-EIISSDTFVCNMLID 515 (667)
Q Consensus 445 ~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~---~~-~~~~~~~~~~~~l~~ 515 (667)
.+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-..+.+.+. +. +....++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 344555554444433 33334466666665555555544332211 1222222222 22 222237788889999
Q ss_pred HHHhcCChHHHHHHHHhcCCCCh
Q 005969 516 MYGKCGSIGSSVKIFNEMTDRNV 538 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~~~~ 538 (667)
.|.+.|++.+|+..|-.-.+++.
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhH
Confidence 99999999999887765544333
No 288
>PRK09687 putative lyase; Provisional
Probab=87.05 E-value=27 Score=32.76 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHc
Q 005969 274 ECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELLQL 336 (667)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~ 336 (667)
.++..+....+.++.+.|+..-.-.+.+.+..++ ..-..+.++...|...+...+..+.+.
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~a~p~L~~l~~~ 263 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDKTLLPVLDTLLYK 263 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCHhHHHHHHHHHhh
Confidence 4455666666666666666443333334443333 234566777777777777777776653
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.88 E-value=0.73 Score=38.01 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=60.4
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhH
Q 005969 146 GVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGK 225 (667)
Q Consensus 146 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 225 (667)
.++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777777777888888777667788888999999998888888888884432 334556667777777777
Q ss_pred HHHHHHHh
Q 005969 226 ALELYLRM 233 (667)
Q Consensus 226 a~~~~~~m 233 (667)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777654
No 290
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.79 E-value=4.8 Score=37.83 Aligned_cols=221 Identities=14% Similarity=0.098 Sum_probs=95.6
Q ss_pred HhhcCChhHHHHHHhcCCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhc
Q 005969 415 YNRTGQYNETVKLLSQLER------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAA--RIYPD---NYTFVSLLSACSK 483 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~ 483 (667)
+..+.+.++++..+.+... ..-.++..+..+.++.|++++++..--.-.+. ...-. -..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444331 12234555566666666666554332111110 00111 1233334444444
Q ss_pred cCChhhHHHHHHHHHHhCCCCC---chhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C--ChhhHHHHHHHHHhC
Q 005969 484 LCNLALGSSLHGLIKKTEIISS---DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R--NVITWTALISALGLN 551 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~ 551 (667)
..++.+++.+-+.........+ ......++..++...+.++++++.|+...+ | ....+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444444433332211111 012223344455555556666666554431 1 223555666666666
Q ss_pred CChHHHHHHHHHHHH----cCCCCCHhHH-----HHHHHHHhccCCHHHHHHHHHHhHHh---hCCCCC-cchhHHHHHH
Q 005969 552 GFAQRALEKFREMEF----LGFKPDRVAL-----IAVLTACRHGGLVREGMELFERMNRS---YGVEPE-MDHYHCVVDL 618 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~----~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~ 618 (667)
.++++|.-+..+..+ .|+.--...| -.+.-++...|...+|.+..++..+- .|-.+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666655544332 1211111112 22333455556666666665554322 122221 1233445555
Q ss_pred HhhcCChHHHHHHHHhC
Q 005969 619 LVRYGHLKEAEKIITTM 635 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m 635 (667)
|-..|+.+.|+.-++..
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 66666666655555443
No 291
>PRK09687 putative lyase; Provisional
Probab=86.69 E-value=28 Score=32.63 Aligned_cols=203 Identities=11% Similarity=0.007 Sum_probs=122.9
Q ss_pred CCCcchHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh-----hhHHHHHHHHHHhCCC
Q 005969 433 RPDIVSWNIVIAACAHNGDY----KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL-----ALGSSLHGLIKKTEII 503 (667)
Q Consensus 433 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 503 (667)
.++...-...+.++...|+. +++...+..+... .|+...-...+.++...+.. ..+...+......
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--- 139 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--- 139 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---
Confidence 45555555566666666653 4567777766432 46666666666666554321 1222333222222
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNG-FAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+ +..+-...+.++++.++.+....+..-+.++|...-...+.++...+ ....+...+..+.. .++...-...+.+
T Consensus 140 ~-~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 140 K-STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 2 55666677778887777554444455555666665555666666543 24566676666664 5677777888888
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 005969 583 CRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFLEGCQ 652 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~ 652 (667)
+.+.|+. .|...+-+..+. + + .....+.++..-|+. +|...+..+- -.||..+-...+.+|.
T Consensus 216 Lg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 216 LALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 8888884 455555444333 2 2 345677888888874 6777777774 4678877777777664
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.62 E-value=19 Score=34.00 Aligned_cols=126 Identities=10% Similarity=0.129 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHhCCCCCChhHHhhHHHHhhc--c----CChhHHHHhhccCCC-------CCchhHHHHHHHHHhCCC
Q 005969 55 PVEGAQLQASVLKNGLFCADAFVGTALLGLYGR--H----GCLDEVVSVFEDMPR-------KSLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 55 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~ 121 (667)
+.....+++.+.+.| +..+..++.+-.-.... . -....|.++++.|++ ++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 334444455555555 44444443332222111 1 123456666666653 233344444443 2222
Q ss_pred h----HHHHHHHHHHHHCCCcCChh--hHHHHHHHhcccCc--hHHHHHHHHHHHHhcCCCchHHHHHHH
Q 005969 122 V----EDCMFLFCELVRSEVALTES--SFVGVIHGLSNEQD--LEFGEQIHGLVIKNGFDYELLVANSLV 183 (667)
Q Consensus 122 ~----~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 183 (667)
. +.+..+|+.+.+.|+..+.. ..+.++..+....+ +..+..+++.+.+.|+++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2 34555666666656554332 33333333332222 346677777777777766555554443
No 293
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.48 E-value=11 Score=27.98 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 457 (667)
++.+.+...++.+++..+++ +..+...|+|++|..+.+...-||...|-+|-. .+.|-.+++..
T Consensus 26 tIAdwL~~~~~~~E~v~lIR--------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIR--------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHhcCCchHHHHHHHH--------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 44455555555555555443 346677788888888888887788777765543 36677777777
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 005969 458 LFKYMRAARIYPDNYTFV 475 (667)
Q Consensus 458 ~~~~m~~~g~~p~~~~~~ 475 (667)
.+.+|...| .|...+|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 777777766 45444443
No 294
>PRK11906 transcriptional regulator; Provisional
Probab=86.41 E-value=34 Score=34.02 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhcc---------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc
Q 005969 452 YKEVLELFKYMRA-ARIYPDN-YTFVSLLSACSKL---------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520 (667)
Q Consensus 452 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 520 (667)
.+.|+.+|.+... ..+.|+. ..|..+..++... .+..+|.++-+...+.+ +.|+.....+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 4567777777762 1244543 3455554443221 12223344444444443 33555555555555555
Q ss_pred CChHHHHHHHHhcC--CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 521 GSIGSSVKIFNEMT--DRNV-ITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 521 ~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
++.+.|...|+... .||. ..|......+.-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55555555555444 2322 2333333333445555555555555444
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.18 E-value=1.8 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345555555566666666666665555
No 296
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.87 E-value=6.6 Score=31.80 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALL 82 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 82 (667)
..+...+..-.....+.|++.+|++.|+.+..+-.. .+-.......|+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~--------------------------------g~ya~qAqL~l~ 54 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF--------------------------------GEYAEQAQLDLA 54 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--------------------------------CcccHHHHHHHH
Confidence 334444444455666677777777777777765111 012223345567
Q ss_pred HHhhccCChhHHHHhhccCCC--C--CchhHHHHHHHHHhC
Q 005969 83 GLYGRHGCLDEVVSVFEDMPR--K--SLVTWNSIVSIFGKH 119 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~ 119 (667)
.+|-+.|++++|...++++.+ | ....|-..+.+++.-
T Consensus 55 yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 55 YAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 777788888888887777653 2 223555556665543
No 297
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.85 E-value=53 Score=35.09 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=23.8
Q ss_pred ccCChhHHHHHHHHHHHhcCC-CC-------chHHHHHHHHHHhcCChHHHHHHHh
Q 005969 254 GLQNSILGKSIHAKVIKNALE-CD-------VFVGSALVDFYAKCDNLEGAHLCFS 301 (667)
Q Consensus 254 ~~~~~~~a~~~~~~~~~~~~~-~~-------~~~~~~li~~~~~~g~~~~a~~~~~ 301 (667)
-.+++..+...++.+.+..-. |+ +..+....-.+...|+++.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346666677777766654211 11 1111111122334577777777776
No 298
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.48 E-value=39 Score=33.20 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhcc
Q 005969 139 LTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKD 201 (667)
Q Consensus 139 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 201 (667)
-|..+|-.||.-+...+..++..+++++|..- ++.-..+|..-+.+=....++...+.+|.+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 34445555555555555555555555555321 122233444444444444444444444443
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.20 E-value=15 Score=34.08 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 005969 400 NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY 472 (667)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 472 (667)
+.+.+..+....+..-....++++++..+-+++. ++...+ +.++. +-.-++++++.++..=++-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 3444444445555555555666777666666652 222222 22222 23446778999998888999999999
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEI 502 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 502 (667)
++..+|..+.+.++...|.++.-.+.....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999888777666543
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.11 E-value=14 Score=31.71 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-------cCCccchhhHHHHHHHHHhC-CCCCChhHHh
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-------CDSLNPVEGAQLQASVLKNG-LFCADAFVGT 79 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-------~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (667)
.|..++.... .+.. +.....+++... +...+|..+-. ...++++.|...++..+... .-.....+-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 4666666654 3333 777777888864 33444544432 22237778877777766432 0011122233
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCchh--HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLVT--WNSIVSIFGKHGFVEDCMFLFCELVRSE 136 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~ 136 (667)
.|.+.....|.+|+|..+++....++... ...-..++...|+-++|..-|+...+.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44566777888888888888887765444 3334457788888888888888887765
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.11 E-value=1.3 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.4
Q ss_pred CCchhHHhHHHHHHHhcCChHHHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
|.++..|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556677777777777777777664
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.92 E-value=16 Score=30.33 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=21.5
Q ss_pred ccCChhHHHHhhccCC--CCCchhHHH-HHHHHHhCCChHHHHHHHHHHHH
Q 005969 87 RHGCLDEVVSVFEDMP--RKSLVTWNS-IVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~--~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
+.++.+++..+++.+. +|+...... -...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3445555555555443 233222211 12233455555555555555544
No 303
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.82 E-value=29 Score=31.09 Aligned_cols=211 Identities=17% Similarity=0.063 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 450 GDYKEVLELFKYMRAARIY-PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
+....+...+......... .....+......+...++...+...+.........+.....+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555543322 134566666777777788887777777766531123356666777777777888888888
Q ss_pred HHHhcCC--CCh-hhHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 529 IFNEMTD--RNV-ITWTALIS-ALGLNGFAQRALEKFREMEFLGFKP----DRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 529 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
.+..... ++. ........ .+...|+.+.|...+.+... ..| ....+......+...++++.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887764 222 22333333 78899999999999999866 333 23345555555778899999999999885
Q ss_pred HhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHhhhh
Q 005969 601 RSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 601 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
.. .+. ....+..+...+...+++++|...+.... ..|+ ...+..+...+...+..+.+....
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 44 333 46778888899999999999999998884 4454 455555555555555566555433
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.71 E-value=5.2 Score=29.50 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
++.+-++.+....+.|++......+++|.+..|+..|..+++-++.+ ...+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44555556666667788888888888888888888888888877434 2223445555544
No 305
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=23 Score=38.56 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhh-
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYG- 86 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 86 (667)
-|..||.-|...|++++|+.+|.+....--.-+. +. .+.-..+.+-+.+.+ .++.. |+-.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~~----------~~~~e~ii~YL~~l~--~~~~~----Li~~y~~ 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-FQ----------LDGLEKIIEYLKKLG--AENLD----LILEYAD 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-ch----------hhhHHHHHHHHHHhc--ccchh----HHHHHhh
Confidence 4788999999999999999999999874210111 11 111112333333333 23222 222222
Q ss_pred --ccCChhHHHHhhccCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 87 --RHGCLDEVVSVFEDMPR--KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 87 --~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
-..+++...++|..-.. -....-. -+-.|......+-++..++.+....-.++..-.+.++..|+
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34577777888876211 1111122 23345667788888889998877665666666777776665
No 306
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=34 Score=31.66 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE 432 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (667)
......|+..+|...|+.. ..+.+......++.+|...|+.+.|..++..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445567777777766655 333334444555556666666666666665554
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.29 E-value=5.9 Score=29.59 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
+..+-++.+....+.|++......+++|.+..++..|..+++-+..+ +.+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 34445555555667788888888888888888888888888887544 33333366666554
No 308
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.17 E-value=11 Score=30.50 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=43.5
Q ss_pred HhhccCChhHHHHhhccCCC--C----CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcc
Q 005969 84 LYGRHGCLDEVVSVFEDMPR--K----SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSN 153 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 153 (667)
...+.|++++|.+.|+.+.. | ..-+--.++.++-+.++++.|+..+++.++.....-...|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34466777777777777754 2 1223445666777778888888887777765433333455555555553
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.40 E-value=23 Score=28.91 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred HhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCC-cchHHHHHHHHHH
Q 005969 384 AKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPD-IVSWNIVIAACAH 448 (667)
Q Consensus 384 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~ 448 (667)
...++.+++..++..+ -.|.....-..-...+...|+|++|..+|+.+.+.. ...|..-+.++|-
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3477888888877766 233333333334445566667777777776666432 2244444444443
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.99 E-value=36 Score=30.80 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHH----HhCCCCCchhHHh
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRA---ARI--YPDNYTFVSLLSACSKLCNLALGSSLHGLIK----KTEIISSDTFVCN 511 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 511 (667)
.++..+.+.|++++.+..+.+|.. ..+ .-+..+.++++...+...+.+...++++.-. +......--.+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345556666666666666665532 111 1234455666665555555554444443222 1111110112333
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--------CC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHhH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD--------RN-------VITWTALISALGLNGFAQRALEKFREMEFL-GFKPDRVA 575 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p~~~~ 575 (667)
-|...|...+.+....++++.+.+ .| ...|..=|..|....+-.+...+|++...- .--|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 455566666666666666655541 01 124555566777666666666666665431 12344443
Q ss_pred HHHHHHHH-----hccCCHHHHHHHHHHhHHhh
Q 005969 576 LIAVLTAC-----RHGGLVREGMELFERMNRSY 603 (667)
Q Consensus 576 ~~~li~~~-----~~~g~~~~A~~~~~~~~~~~ 603 (667)
.. .|+-| .+.|.+++|..=|-+..+.+
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 33 33333 45577776654444333443
No 311
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.57 E-value=62 Score=33.23 Aligned_cols=123 Identities=8% Similarity=0.129 Sum_probs=73.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc---cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHH
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS---CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGL 84 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (667)
.|..||.---.....+.+..++..+... .|-..-|-.-.+ ..-+..+.+.++|++.+.. ++.+...|...+..
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAF 122 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence 4455554444444555566666666643 455554444444 3333677777777776653 46666666666655
Q ss_pred hh-ccCChhHHHHhhccCCC------CCchhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 85 YG-RHGCLDEVVSVFEDMPR------KSLVTWNSIVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 85 ~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
+. ..|+.+.....|+.... .+...|...|..-..++++.....++++.++
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 44 34666666666665442 2445666667666677777777777777766
No 312
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.04 E-value=41 Score=30.80 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=69.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHhccCChhhHHHHHHHHHHh---CCCCCchhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTF-------VSLLSACSKLCNLALGSSLHGLIKKT---EIISSDTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 511 (667)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|+.....+.....++. -..|.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344556788999999999999999887776543 44556677777665544443322211 11122344455
Q ss_pred HHHHHHHhc-CChHHHHHHHHhcCCC-----Ch----hhHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHhH
Q 005969 512 MLIDMYGKC-GSIGSSVKIFNEMTDR-----NV----ITWTALISALGLNGFAQRALEKF----REMEFLGFKPDRVA 575 (667)
Q Consensus 512 ~l~~~~~~~-~~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~~~~~~A~~~~----~~~~~~g~~p~~~~ 575 (667)
+|+..+... ..++....+.....+. .. ..-.-++..+.+.|.+.+|+.+. .++.+..-+|+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 555554433 2344444444443321 00 11122455555566665555433 33334444444433
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.86 E-value=3.5 Score=23.31 Aligned_cols=25 Identities=24% Similarity=0.012 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 542 TALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
..+...+...|++++|++.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444555555555555555444
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.80 E-value=2.7 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5789999999999999999999999876
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.73 E-value=11 Score=27.90 Aligned_cols=50 Identities=6% Similarity=-0.030 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHh
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKN 170 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 170 (667)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|..+++-++..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455666667777777888888888888888888888888888876643
No 316
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.89 E-value=43 Score=30.31 Aligned_cols=178 Identities=11% Similarity=0.086 Sum_probs=97.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh--
Q 005969 444 AACAHNGDYKEVLELFKYMRAARI--YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK-- 519 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 519 (667)
..-.+.|++++|.+.|+.+..... +-...+.-.++.++-+.++.+.|....++..+.....|+. -|-.-+.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc
Confidence 344578999999999999886531 2234566677778889999999999999888876555443 23333333331
Q ss_pred -----cCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 005969 520 -----CGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 520 -----~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
..+...+.+.+..+. .++.-|=...=...|......+... . ..-=..+.+.|.+.|.+-.|..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~--------~~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFK--------ELVQRYPNSRYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred cCCccccCHHHHHHHHHHHH--------HHHHHCCCCcchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHHHH
Confidence 112222222222222 1222222222222222222222110 0 0001234556777777777777
Q ss_pred HHHHhHHhhCCCCCc---chhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 595 LFERMNRSYGVEPEM---DHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-.-++
T Consensus 189 R~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 189 RFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77777555 33333 234456667777777777776666553
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.77 E-value=3 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINR 35 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (667)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999874
No 318
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.72 E-value=48 Score=30.69 Aligned_cols=158 Identities=15% Similarity=0.045 Sum_probs=78.1
Q ss_pred ccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCcCChhhHHHHHHHhcccCc-----h
Q 005969 87 RHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLF----CELVRSEVALTESSFVGVIHGLSNEQD-----L 157 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~li~~~~~~~~-----~ 157 (667)
+++++++|++++.. =...+.+.|+...|.++. +-+.+.+++++......++..+...+. .
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45666777766422 233455666665555443 333445666676665555555543321 2
Q ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 158 EFGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 158 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
+-..+...+- +.+ ...|+..+..+...|.+.|++.+|+.-|-....++...+-.++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 2223333333 222 2346788899999999999999998877666544444443333333333333322
Q ss_pred CCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHh
Q 005969 236 DIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKN 271 (667)
Q Consensus 236 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 271 (667)
|...-. .+-.+.-.+++..|...++...+.
T Consensus 141 -----dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -----DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111111 222344557778888777766654
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.53 E-value=41 Score=34.43 Aligned_cols=149 Identities=17% Similarity=0.056 Sum_probs=80.7
Q ss_pred hcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 005969 417 RTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGL 496 (667)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 496 (667)
..++++.|..++..+.+ ..-+.+...+.+.|-.++|+++ .+|+..- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 34455555555444442 2233444555556655555543 2332211 1123345666666655443
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 497 IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 497 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|. .
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~----- 724 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N----- 724 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----
Confidence 22 455677777777777777777777766543 45566666666666655555555555542 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q 005969 577 IAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~ 598 (667)
|...-+|...|+++++.+++.+
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHh
Confidence 2233345566777777777654
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.50 E-value=4.2 Score=24.37 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREM 564 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~ 564 (667)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444444
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.42 E-value=9.2 Score=33.30 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh--CCCCCcchhHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSY--GVEPEMDHYHCVV 616 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~ 616 (667)
|.+.-++.+.+.+.+.+++...++-++. +| |..+-..+++.+|-.|++++|..-++-. ... ...+...+|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~-a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA-ATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHH-hhcCcccchHHHHHHHHH
Confidence 4556677888999999999999988886 55 5667788999999999999998888766 331 2333345566666
Q ss_pred HH
Q 005969 617 DL 618 (667)
Q Consensus 617 ~~ 618 (667)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.56 E-value=33 Score=28.09 Aligned_cols=89 Identities=7% Similarity=-0.005 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCChHHHHHHHhccCCCC-cccHHHHHHHHhcCCChH-HHHH-H
Q 005969 255 LQNSILGKSIHAKVIKNALE-CDVFVGSALVDFYAKCDNLEGAHLCFSEISNKN-IVSWNALILGYASKSSPT-SIFL-L 330 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~-a~~~-~ 330 (667)
.++.+++..+++.|.-..++ +...++. ...+...|+|++|.++|+++.+.. ...|..-+.++|-....+ ..+. -
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A 100 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHA 100 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHH
Confidence 45555555555555443221 1222222 234567788888888888887743 335666666655443333 3332 2
Q ss_pred HHHHHcCCCCCHhhH
Q 005969 331 IELLQLGYRPNEFTF 345 (667)
Q Consensus 331 ~~m~~~~~~~~~~~~ 345 (667)
.++.+.+-.|+....
T Consensus 101 ~~~le~~~~~~a~~L 115 (153)
T TIGR02561 101 DEVLARDADADAVAL 115 (153)
T ss_pred HHHHHhCCCHhHHHH
Confidence 345555555555443
No 323
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=78.97 E-value=55 Score=30.37 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=34.2
Q ss_pred chHHHHH-HHHHHHHhcCCCch----HHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHH
Q 005969 156 DLEFGEQ-IHGLVIKNGFDYEL----LVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKAL 227 (667)
Q Consensus 156 ~~~~a~~-~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 227 (667)
.++++.. +-++|.+.++ |++ .+|..+|++- .+.+-+++..+-.-+....|..++.+++..|+.+-.+
T Consensus 270 p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsav----eWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAV----EWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHH----hhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHH
Confidence 3444333 3344555544 443 3466665543 3332222222222234557888888888888876544
No 324
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.86 E-value=22 Score=27.00 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=53.2
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|..|.+.+...+ .....+-..-+..+.++|++++|+..=.....||...|-+|-. .+.|-.+++..-+.++.
T Consensus 21 cH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 5677777777777766 2344444555677889999999966666666788888877644 57788888888888776
Q ss_pred HCC
Q 005969 134 RSE 136 (667)
Q Consensus 134 ~~~ 136 (667)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 665
No 325
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.72 E-value=46 Score=33.47 Aligned_cols=77 Identities=13% Similarity=-0.009 Sum_probs=34.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCcCChhh--HHHHHHHhcccCchHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHhcCCh
Q 005969 117 GKHGFVEDCMFLFCELVRSEVALTESS--FVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELL--VANSLVNMYFQCAGI 192 (667)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 192 (667)
++.|+.+- ++.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. ....-+...+..|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44555544 344445566655432 2334445555566543 33344445433321 011223344445555
Q ss_pred hHHHHhhcc
Q 005969 193 WSAEKMFKD 201 (667)
Q Consensus 193 ~~A~~~~~~ 201 (667)
+.+..+++.
T Consensus 82 ~~v~~Ll~~ 90 (413)
T PHA02875 82 KAVEELLDL 90 (413)
T ss_pred HHHHHHHHc
Confidence 555555543
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.67 E-value=15 Score=27.63 Aligned_cols=48 Identities=6% Similarity=0.011 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhc
Q 005969 124 DCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNG 171 (667)
Q Consensus 124 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 171 (667)
+..+-++.+....+.|++......+++|.+.+++..|.++++-++..-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 555666667777778888888888888888888888888888776653
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.52 E-value=3.2 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=11.9
Q ss_pred hhHHHHhhccCChhHHHHhhc
Q 005969 79 TALLGLYGRHGCLDEVVSVFE 99 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~ 99 (667)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555566666666665554
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.41 E-value=43 Score=34.30 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
+.+...+.+.|..++|+++-. +. ..-.....+.|+++.|.++..+. .+..-|..|..+..+.|++..|.
T Consensus 618 t~va~Fle~~g~~e~AL~~s~------D~---d~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~ 686 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELST------DP---DQRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLAS 686 (794)
T ss_pred hhHHhHhhhccchHhhhhcCC------Ch---hhhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHH
Confidence 355566666666666665211 10 11122233444444444443332 23344555555555555555555
Q ss_pred HHHHHHH
Q 005969 457 ELFKYMR 463 (667)
Q Consensus 457 ~~~~~m~ 463 (667)
+.|.+..
T Consensus 687 EC~~~a~ 693 (794)
T KOG0276|consen 687 ECFLRAR 693 (794)
T ss_pred HHHHhhc
Confidence 5554443
No 329
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.56 E-value=4.7 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINR 35 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (667)
..|..+...+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35778889999999999999999999874
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.25 E-value=6 Score=24.40 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC
Q 005969 112 IVSIFGKHGFVEDCMFLFCELVRSE 136 (667)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~ 136 (667)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666677766666666543
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.96 E-value=20 Score=31.06 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh--CCCCCcchhHHHHHHHhhcCChHHH
Q 005969 555 QRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY--GVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
+.|.+.|-++...+.--++.....|...| ...|.+++..++.+...-. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555544333333333333333 3455555655555543321 2244555566666666666655554
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.62 E-value=8.9 Score=27.13 Aligned_cols=46 Identities=22% Similarity=0.094 Sum_probs=28.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHH
Q 005969 550 LNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
..++.++|+..|+...+.-..|. -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666433322 12566677777777777766655
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.54 E-value=46 Score=27.72 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=21.9
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
+.++.+.+..++.-+.-.....+...+ .-...+...|++.+|.++|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~--~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDL--FDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHhCCHHHHHHHHHHHh
Confidence 344555555555554444322112222 22233444555555555555554
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.32 E-value=5 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555556666655555544
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.70 E-value=4 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005969 9 FNSIISAYSRCGYVEDALRMFLYMINR 35 (667)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (667)
+-.+..++.+.|++++|...|+.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677888899999999999999886
No 336
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.55 E-value=46 Score=27.23 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHccCC-hhHHHHHHHHhHhCCcCCChhhHHHHHHHhhc
Q 005969 206 DVVSWNTIIGALAESEN-FGKALELYLRMSVDIVFPNQTTFVYVINSCAG 254 (667)
Q Consensus 206 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (667)
+..+|++++.+..+... ---+..+|..|++.+.+++..-|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44566666666655544 33455666666666666666666666666554
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.02 E-value=65 Score=28.74 Aligned_cols=52 Identities=8% Similarity=0.047 Sum_probs=30.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhHHH---HHHH-HHhc--cCCHHHHHHHHHHh
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDRVALI---AVLT-ACRH--GGLVREGMELFERM 599 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~---~li~-~~~~--~g~~~~A~~~~~~~ 599 (667)
-...+++.+|+.+|++.....+..+..-|. .++. ++|. ..|.-.+...+++.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 345678999999999988765554433332 1222 1222 24555555555555
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.45 E-value=64 Score=28.43 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=51.3
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHhHHHHHHHH
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFL--GFKPDRVALIAVLTA 582 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p~~~~~~~li~~ 582 (667)
.+.-+..+.+.+...+++...+.-. +| |...-..+++-+|-.|++++|..-++-.-.. ...+...+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777888888888887554 34 5556777889999999999998877776552 122335577777765
No 339
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.43 E-value=18 Score=26.23 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHH
Q 005969 58 GAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMF 127 (667)
Q Consensus 58 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 127 (667)
+.+++..++++|.+.. .....+..+-...|+.+.|.+++..++ +....|..++.++-..|+-+-|.+
T Consensus 21 ~~~v~d~ll~~~ilT~--~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLLTE--EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 4456666666662322 233333333346688999999999998 888888899999888887665543
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.48 E-value=99 Score=30.14 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP---DRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
...+|..+...+.+.|+++-|...+.++...+..+ .+.....-++.....|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578888888999999999999988888754222 334444456667778888889888887765
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.41 E-value=5.9 Score=24.43 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRG 36 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~ 36 (667)
.|..+|...|+.+.|+++++.....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999999754
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.30 E-value=50 Score=28.75 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCChhHH
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNG---FDYELLVANSLVNMYFQCAGIWSA 195 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 195 (667)
.-+.|.+.|-.+...+.--++. .-..+..|....|.+++.+++....+.. -.+|+.++.+|...|-+.|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3455666666666555433333 3333333334566666666666665532 245666666666666666666554
No 343
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.70 E-value=88 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHccCChhHHHHHHHHhHhCCcCCChhhH
Q 005969 213 IIGALAESENFGKALELYLRMSVDIVFPNQTTF 245 (667)
Q Consensus 213 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 245 (667)
+.+-..+.+++++|+..|.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344566778888888888888888877776554
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.85 E-value=1.6e+02 Score=31.54 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=11.2
Q ss_pred HhHHHHHHHhcCChHHHHHH
Q 005969 510 CNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~ 529 (667)
|+.++-.+++.|+..+|+.+
T Consensus 650 ~~E~VYlLgrmGn~k~AL~l 669 (846)
T KOG2066|consen 650 YEELVYLLGRMGNAKEALKL 669 (846)
T ss_pred HHHHHHHHHhhcchHHHHHH
Confidence 44555556666666555544
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.97 E-value=61 Score=29.80 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=56.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH---
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG--- 518 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 518 (667)
=|++++..+++.+++.+.-.--+.--+.-......-|-.|.+.+....+.++-.......... +..-|.++.+.|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHHHHHH
Confidence 377888888888887776554433222333445555556788888888888877666553333 3344666666554
Q ss_pred --hcCChHHHHHHH
Q 005969 519 --KCGSIGSSVKIF 530 (667)
Q Consensus 519 --~~~~~~~A~~~~ 530 (667)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 458888888877
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.79 E-value=1e+02 Score=28.07 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=98.3
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc--------CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC----------
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL--------NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---------- 433 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 433 (667)
+....|++++....+.+++-..++|+.- ....-..+-..+...|...+.+.+..++++++.+
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 4456677777777777776666665543 2233344445677777777777777777776652
Q ss_pred -----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----hccCChhhHHH-HHHHHH---
Q 005969 434 -----PDIVSWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPDNYTFVSLLSAC-----SKLCNLALGSS-LHGLIK--- 498 (667)
Q Consensus 434 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~~~~~~a~~-~~~~~~--- 498 (667)
.-...|..=|+.|....+-.+-..++++...-. --|.+..... |+-| .+.|.+++|-. +|+...
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 112346666677777776666666776654322 2344443333 3333 34566666543 333333
Q ss_pred HhCCCCCchh--HHhHHHHHHHhcCC----hHHHHHHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 005969 499 KTEIISSDTF--VCNMLIDMYGKCGS----IGSSVKIFNEMT-DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP 571 (667)
Q Consensus 499 ~~~~~~~~~~--~~~~l~~~~~~~~~----~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p 571 (667)
+.|. |.... -|-.|.+++.+.|- ..+|. ... +|.+...+.|+.+|-. +++.+-.+++..-.+. +-.
T Consensus 263 EsGs-pRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~-IM~ 335 (440)
T KOG1464|consen 263 ESGS-PRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSN-IMD 335 (440)
T ss_pred ccCC-cchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhcc-ccc
Confidence 2231 10111 13334444444441 11110 000 2455667777777743 3455444444433322 334
Q ss_pred CHhH
Q 005969 572 DRVA 575 (667)
Q Consensus 572 ~~~~ 575 (667)
|+..
T Consensus 336 DpFI 339 (440)
T KOG1464|consen 336 DPFI 339 (440)
T ss_pred cHHH
Confidence 4443
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.25 E-value=14 Score=20.75 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005969 7 VSFNSIISAYSRCGYVEDALRMFLYMINR 35 (667)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (667)
.+|..+...|...|++++|...|++..+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788899999999999999999998863
No 348
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=66.16 E-value=28 Score=27.47 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHhhh
Q 005969 604 GVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWR-TFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~~~~~~a~~~ 663 (667)
|-+--..+..++..++.-.|..++|.++++..+.-++....| .++..|.++.+.++-..+
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444445667788888888888888888888887666655554 678888888776554443
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.57 E-value=91 Score=27.03 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=58.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcchh-----HHHHHHHhhcCChhHHHHHHhcCCCCCcch--HHHHHHHHHHcC
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVPA-----NIIAGIYNRTGQYNETVKLLSQLERPDIVS--WNIVIAACAHNG 450 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g 450 (667)
.+...+...|++++|...++.....+....+ ..+.+.....|++++|.++++....++-.. ...-.+.+...|
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 4556778888888888888766322222222 235556677788888888887776654333 333345677778
Q ss_pred ChhHHHHHHHHHHHcC
Q 005969 451 DYKEVLELFKYMRAAR 466 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g 466 (667)
+-++|..-|.+..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888887777764
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.08 E-value=13 Score=26.33 Aligned_cols=48 Identities=6% Similarity=0.160 Sum_probs=37.1
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHhhcCChHHHHHHH
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEM-DHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
.....++|+..|....++..-+|+. .++..++.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999987663333332 46788899999999999988753
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.51 E-value=1.9e+02 Score=30.46 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHH-HHHcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccCChhh-----HHHHHHHHHHhCCCCCch
Q 005969 441 IVIAA-CAHNGDYKEVLELFKYMRA-------ARIYPDNYTFVSLLSACSKLCNLAL-----GSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 441 ~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~ 507 (667)
....+ +....|.+.|+.+|+.+.+ .| .......+...|.+...+.. |..++.+..+.| ++
T Consensus 253 ~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g----~~ 325 (552)
T KOG1550|consen 253 CYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG----NP 325 (552)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC----Cc
Q ss_pred hHHhHHHHHHHhcC---ChHHHHHHHHhcCCCChhhHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 508 FVCNMLIDMYGKCG---SIGSSVKIFNEMTDRNVITWTALISALGLNG-----FAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 508 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
...-.+...|.... +...|.++|....+.....-..-+..|-..| +.+.|..++.+.-+.| .|...--...
T Consensus 326 ~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~ 404 (552)
T KOG1550|consen 326 DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGA 404 (552)
T ss_pred hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHH
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 580 LTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
+..+.. ++++.+.-.+..+ ...|..
T Consensus 405 ~~~~g~-~~~~~~~~~~~~~-a~~g~~ 429 (552)
T KOG1550|consen 405 FYEYGV-GRYDTALALYLYL-AELGYE 429 (552)
T ss_pred HHHHcc-ccccHHHHHHHHH-HHhhhh
No 352
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.07 E-value=21 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=18.5
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|++.+|..++.++...|+.++|..+.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566666666666666666666666666655
No 353
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.38 E-value=56 Score=28.28 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=54.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNY-----TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
.-+.+.|++++|..-|.+..+. +++... .|..-..++.+.+.++.|..-..+..+.+ |........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3456788888888888888774 333332 23333345667777777777777777664 312233333345666
Q ss_pred hcCChHHHHHHHHhcCC
Q 005969 519 KCGSIGSSVKIFNEMTD 535 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~ 535 (667)
+..++++|+.-|+.+.+
T Consensus 180 k~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE 196 (271)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 66677777776666664
No 354
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.91 E-value=26 Score=29.76 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCCC--HhH-----HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 554 AQRALEKFREMEFLGFKPD--RVA-----LIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~--~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
++.|+-+|+.+.+.--.|. ... -...+-.|.+.|.+++|.+++++... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHccc
Confidence 6778888888877532331 111 22345568888888888888887743 3555555554555555543
No 355
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.10 E-value=1.7e+02 Score=29.02 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCC--CcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPR--AVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAH 448 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 448 (667)
.|+.-|...|++.+|.+++++++.|. ....+.+++.+..+.++-+..+.+++..-.....|-+.|-.+|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 67788888999999999888887663 334456666666666666666666666555666666666666654
No 356
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.60 E-value=21 Score=24.07 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
++...++++.+... .-|-.---.+|.+|...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444432 33444445567777777777777777777643
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.07 E-value=46 Score=26.23 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 557 ALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 557 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
..+-++.+..-.+.|++.....-+++|-+..|+..|..+|+-++.+ ..+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3344455555667888888888888888888888888888887444 333333444443
No 358
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.97 E-value=34 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=18.9
Q ss_pred HhCCChHHHHHHHHHHHHCCCcCChhhHHHHHH
Q 005969 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIH 149 (667)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 149 (667)
.+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666655555555443
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.57 E-value=1.5e+02 Score=27.69 Aligned_cols=43 Identities=5% Similarity=-0.088 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
..+|.++|..+..+... +.+-+.++.++....+..+|...+..
T Consensus 149 s~KA~ELFayLv~hkgk---~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK---EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC---cccHhHHHHHHccccchhhHHHHHHH
Confidence 36788999988887543 34445667777777777777666543
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.56 E-value=40 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA 480 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 480 (667)
.+.|-.+++...+++|.+.|+..+...+..+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 4667778888888889888888888888777653
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.47 E-value=78 Score=29.15 Aligned_cols=87 Identities=9% Similarity=0.048 Sum_probs=43.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----
Q 005969 113 VSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQ---- 188 (667)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 188 (667)
|.++++.+++.+++.-.-+.-+..-+.-+.....-|-.|.+.++...+.++-.......-.-+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6677777777777665544433222222333444455556666666666665555543222222334444444432
Q ss_pred -cCChhHHHHhh
Q 005969 189 -CAGIWSAEKMF 199 (667)
Q Consensus 189 -~g~~~~A~~~~ 199 (667)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.43 E-value=4.4e+02 Score=32.89 Aligned_cols=159 Identities=15% Similarity=0.019 Sum_probs=94.3
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCChhHHHHhhcc-CCCCCchhHHHHHHHHHccCCh
Q 005969 147 VIHGLSNEQDLEFGEQIHGLVIKNGF--DYELLVANSLVNMYFQCAGIWSAEKMFKD-VEIRDVVSWNTIIGALAESENF 223 (667)
Q Consensus 147 li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 223 (667)
+..+-.+.+.+..|...++.-..... ......+-.+...|...+++|+...+... ...++ ...-|--....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 33344466777778777777311111 11233445555588888888887777663 33332 22334456778999
Q ss_pred hHHHHHHHHhHhCCcCCC-hhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch-HHHHHHHHHHhcCChHHHHHHHh
Q 005969 224 GKALELYLRMSVDIVFPN-QTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF-VGSALVDFYAKCDNLEGAHLCFS 301 (667)
Q Consensus 224 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~ 301 (667)
..|...|+.+.+. .|+ ..+++.++......|.++.+....+...... .+... .++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999876 344 6678878877777777776665444433321 11122 22233344467777777776655
Q ss_pred ccCCCCcccHHHH
Q 005969 302 EISNKNIVSWNAL 314 (667)
Q Consensus 302 ~~~~~~~~~~~~l 314 (667)
..+..+|...
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4555555554
No 363
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.37 E-value=30 Score=32.56 Aligned_cols=78 Identities=14% Similarity=-0.013 Sum_probs=48.8
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
.+-|.+.|.+++|...|.... .| |.+++..-..+|.+...+..|..=....+..+ ...+.+|.+.+.-.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 456777888888888887655 35 67777777777877777776666555554421 33455665555444
Q ss_pred HHHHHHHHh
Q 005969 591 EGMELFERM 599 (667)
Q Consensus 591 ~A~~~~~~~ 599 (667)
.++....+.
T Consensus 176 ~~Lg~~~EA 184 (536)
T KOG4648|consen 176 ESLGNNMEA 184 (536)
T ss_pred HHHhhHHHH
Confidence 444444444
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.28 E-value=50 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 107 VTWNSIVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
.-|..|+..|-..|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3688888888888999999999888866
No 365
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.17 E-value=33 Score=32.30 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=60.2
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCCh
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN---VITWTALISALGLNGFA 554 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 554 (667)
-+-|.+.|.+++|+..+....... |-++.++..-..+|.+..++..|+.--.....-| +..|+.-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 456888999999999999877664 4477788888888999888887765554443222 22333333333444555
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 005969 555 QRALEKFREMEFLGFKPDR 573 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~ 573 (667)
.+|.+=++.... +.|+.
T Consensus 182 ~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHhHHHHHh--hCccc
Confidence 666666666655 46763
No 366
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.09 E-value=91 Score=24.90 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 555 QRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
+++.++|..|...|+-.. +..|......+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 378888888888877665 44677777778888888888888764
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.57 E-value=1e+02 Score=25.30 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=35.5
Q ss_pred hHHHHHHHhcCChHHHHHHHHhcC---------CCChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 511 NMLIDMYGKCGSIGSSVKIFNEMT---------DRNVITWTALISALGLNGF-AQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 511 ~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
++++.-...-+......++++.+. ..+..+|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444555544444443 1233445555555543333 223444455555545555555555555
Q ss_pred HHHhcc
Q 005969 581 TACRHG 586 (667)
Q Consensus 581 ~~~~~~ 586 (667)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 555443
No 368
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.78 E-value=1.5e+02 Score=26.82 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=75.7
Q ss_pred hHHhHHHHHHHhc--CChHHHHHHHHhcCCCChh-h-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKC--GSIGSSVKIFNEMTDRNVI-T-WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 508 ~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~-~-~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
..|..+++++... +++++|.+.+-. |... + -.-++.++...|+.+.|+.+++...-..- +......++..
T Consensus 77 ~~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~- 150 (226)
T PF13934_consen 77 PKYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-
Confidence 4566677776654 456677766643 3331 2 22477788888999999998888533211 12223333333
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 005969 584 RHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALI 643 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~ 643 (667)
...+.+.+|..+-+..... -....+..++..+..........+.+-.+++.+....
T Consensus 151 La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 5668899998887766322 1245677787777755543445556666666665544
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.63 E-value=2.9e+02 Score=30.31 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=12.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHh
Q 005969 578 AVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|++.....|++++|...+.++
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4455555566666666666555
No 370
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.34 E-value=1.6e+02 Score=30.18 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=63.4
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcCC--CChh---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMTD--RNVI---TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
...++.-|.+.+++++|..++..|.= -... +.+.+.+.+.+..-.++.+..++.+.-.=..|....-....
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~---- 486 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV---- 486 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH----
Confidence 34577789999999999999998871 1222 33334444454443444444444444322222211111111
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHh
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDT 661 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~ 661 (667)
.++-+.+ . ..-..+...+.|.+++++|..+.-+++ +...+=.+-..-...|+.+.|+
T Consensus 487 --------~ey~d~V-~--------~~aRRfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 487 --------LEYRDPV-S--------DLARRFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred --------HHHHHHH-H--------HHHHHHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 1111111 1 112235555667788888888877775 1222222223333445555554
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.66 E-value=88 Score=23.94 Aligned_cols=79 Identities=11% Similarity=-0.012 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 156 DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
.-++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|--+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 222233334445566777777754444555667776665544 466666667666666655
Q ss_pred CC
Q 005969 236 DI 237 (667)
Q Consensus 236 ~g 237 (667)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.45 E-value=64 Score=23.57 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=21.1
Q ss_pred hcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhH
Q 005969 188 QCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGK 225 (667)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 225 (667)
..|+.+.|.++++.++ +....|..++.++-+.|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3455556666666665 555566666666655555443
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.10 E-value=69 Score=29.63 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
++.....|...|.+.+|.++.++..... +.+...+..|+..+...||--.|.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444566667777777777777766632 335556666777777777765565555554
No 374
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.36 E-value=1.6e+02 Score=26.56 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTDR--NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
-++.++...|+.+.|..+++....+ +......++.. ...+.+.+|..+-+...+. -....+..++..+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 4566666677777777777765532 22222333333 4556677777666554431 113355555555553
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.34 E-value=24 Score=18.59 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=10.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 005969 543 ALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
.+...+...|++++|...+++..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444443
No 376
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.13 E-value=1.5e+02 Score=25.91 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=49.7
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CC------hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhc
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD--RN------VITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRH 585 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~ 585 (667)
+-+...|++++|..-|....+ |. .+.|..-..++.+.+.++.|++-..+.++. .|. ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 345567777777777776552 21 224444455666677777777766666664 332 2223333445666
Q ss_pred cCCHHHHHHHHHHhHH
Q 005969 586 GGLVREGMELFERMNR 601 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~ 601 (667)
..++++|++=|..+..
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7777777777776643
No 377
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.60 E-value=2.4e+02 Score=28.07 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=41.6
Q ss_pred hHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 511 NMLIDMYGKCGSIGSSVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 511 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
..|+.-|...|++.+|.+.++++.-| ....+.+++.+.-+.|+-+..+.++++.-+.| ..|-+.+-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhh
Confidence 34666677777777777777766654 33466666666666666665566665555443 234444444443
No 378
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.24 E-value=82 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
|..|+.-|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444444444444444443
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.04 E-value=99 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+++|.+.|++..+ .+|+...|+.-+.... +|-++..++
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~ 133 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEI 133 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHH
Confidence 4556666666666 4788888877776653 355555555
No 380
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.80 E-value=1.3e+02 Score=28.67 Aligned_cols=76 Identities=3% Similarity=0.041 Sum_probs=40.3
Q ss_pred HHHHHhcCChHHHHHHHHhcC-------CCChhhHH--HHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHh-HHHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMT-------DRNVITWT--ALISALGLNGFAQRALEKFREMEF-----LGFKPDRV-ALIA 578 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~~-~~~~ 578 (667)
+...-+.++.++|.+.++++. +|+.+.|- .....+...|+..++.+++++..+ .|++|+.. .|..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 333344445555555555544 24444333 334555667777777777777666 56666433 4444
Q ss_pred HHHHHh-ccCCH
Q 005969 579 VLTACR-HGGLV 589 (667)
Q Consensus 579 li~~~~-~~g~~ 589 (667)
+-.-|. ..|++
T Consensus 162 lssqYyk~~~d~ 173 (380)
T KOG2908|consen 162 LSSQYYKKIGDF 173 (380)
T ss_pred HHHHHHHHHHhH
Confidence 444443 34444
No 381
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.36 E-value=36 Score=31.24 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhC----CCCCcchhHHHHHHHhhcCChHHHHHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRSYG----VEPEMDHYHCVVDLLVRYGHLKEAEKI 631 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (667)
..+..-|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.++...+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455566666777777777766643322 223344455566666666666665544
No 382
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.61 E-value=2.9e+02 Score=28.49 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcCChhhHHH--HHHH-----hcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-hcCChhHHHH
Q 005969 126 MFLFCELVRSEVALTESSFVG--VIHG-----LSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYF-QCAGIWSAEK 197 (667)
Q Consensus 126 ~~~~~~m~~~~~~~~~~~~~~--li~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 197 (667)
.++++.+.+.|..|+...... .+.. +...|+.+-+.-+++.-..- -.++..-.+.|..+.. ..|+.+-+..
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHH
Q ss_pred hhccCCCCCchhHH--HHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH--HHHHHHhhccCChhHHHHHHHHHHHhcC
Q 005969 198 MFKDVEIRDVVSWN--TIIGALAESENFGKALELYLRMSVDIVFPNQTTF--VYVINSCAGLQNSILGKSIHAKVIKNAL 273 (667)
Q Consensus 198 ~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 273 (667)
+++.....+..... ..+...+..|. .-.++++.+.+.|..++...- .+.+..++..| -.++.+.+.+.|.
T Consensus 127 Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga 200 (480)
T PHA03100 127 LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGA 200 (480)
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCC
Q ss_pred CCCchHH--------HHHHHHHHhcCC--hHHHHHHHhccCC---CCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCC
Q 005969 274 ECDVFVG--------SALVDFYAKCDN--LEGAHLCFSEISN---KNIVSWNALILGYASKSSPTSIFLLIELLQLGYRP 340 (667)
Q Consensus 274 ~~~~~~~--------~~li~~~~~~g~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~ 340 (667)
.++.... ...+...+..|+ .+-..-+++.-.. +|..-.+.+..+..... .++++.+.+.|..+
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~----~~iv~~Ll~~gad~ 276 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN----PEFVKYLLDLGANP 276 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCC
Q ss_pred CHhhHH--HHHHHhhhhhhhHHHHHHHHhcCcchh
Q 005969 341 NEFTFS--HVLRSSLAFQLLQLHCLIIRMGYENYE 373 (667)
Q Consensus 341 ~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (667)
+..... +.+......+..++...+.+.|...+.
T Consensus 277 n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 277 NLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 311 (480)
T ss_pred CccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
No 383
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.31 E-value=1.9e+02 Score=27.64 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHhHH--HHHHHHHhccCCHHHHHHHHHHhHHh----hCCCCCcc-h
Q 005969 542 TALISALGLNGFAQRALEKFREMEFL---GFKPDRVAL--IAVLTACRHGGLVREGMELFERMNRS----YGVEPEMD-H 611 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~-~ 611 (667)
..++...-+.++.++|+++++++.+. --.|+.+.| ....+++...||..++.+.+++..+. .+++|+.. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34455556667899999999998763 235677766 44566677899999999999998441 47777554 3
Q ss_pred hHHHHHHHh-hcCChHHH
Q 005969 612 YHCVVDLLV-RYGHLKEA 628 (667)
Q Consensus 612 ~~~l~~~~~-~~g~~~~A 628 (667)
|..+..-|. +.|++..+
T Consensus 159 fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 555554444 44555543
No 384
>PRK12798 chemotaxis protein; Reviewed
Probab=51.10 E-value=2.6e+02 Score=27.73 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=61.2
Q ss_pred CChHHHHHHHHhcCC----CChhhHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccCCHHH
Q 005969 521 GSIGSSVKIFNEMTD----RNVITWTALISAL-GLNGFAQRALEKFREMEFLGFKPDRV----ALIAVLTACRHGGLVRE 591 (667)
Q Consensus 521 ~~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~ 591 (667)
|+.++|.+.|..+.. +....|-.|+.+- ....+..+|+++|++..- .-|... ...--+-.....|+.++
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 455555555554441 2333344444332 233345556666555544 233321 22222333445555555
Q ss_pred HHHHHHHhHHhhCCCCCcchhHH-HHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 592 GMELFERMNRSYGVEPEMDHYHC-VVDLLVRYG---HLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
+..+-.+..+.+...|-..-|.. +...+.+.+ ..+.-.+++..|.-.-....|-.+-+.-...|+.+.|..+.+
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55555554444444444333322 222222222 223333444444322223445455555555555555554443
No 385
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.81 E-value=1.2e+02 Score=28.48 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=42.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFKPDRV---ALIAVLTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
.|..+..+.|+..+|.+.++.+.+. .|-.. ....|+.+|....-+.+...++-+. ++...+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY-DdislP 343 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY-DDISLP 343 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCc
Confidence 3455556788999999999888774 34222 3456888888888888887777766 443333
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.72 E-value=32 Score=31.95 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALI 577 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 577 (667)
-|+..|....+.||+++|+.++++.++.|+.--..+|-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46688888888899999999999998888765444543
No 387
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.53 E-value=31 Score=32.09 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=28.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHH
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVY 247 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 247 (667)
-|+..|....+.||+++|+.++++.+..|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467788888888888888888888888777655555533
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.32 E-value=68 Score=28.02 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=7.7
Q ss_pred chhHHhHHHHHHHhcCChHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A 526 (667)
++..|..++..+...|+.++|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA 163 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEA 163 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHH
Confidence 333333333333333333333
No 389
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.46 E-value=2.5e+02 Score=26.72 Aligned_cols=132 Identities=12% Similarity=0.033 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--------CCh
Q 005969 467 IYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--------RNV 538 (667)
Q Consensus 467 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~ 538 (667)
+..|..-++.+..+ ...++++-.+..++..+.....--....-....-|++-|+.+.|++.+..-.+ -|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34444444444433 22233333333444444321111334555566778888888888877775543 233
Q ss_pred hhHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 539 ITWTALI-SALGLNGFAQRALEKFREMEFLGFKPDRV----ALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 539 ~~~~~li-~~~~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..+.+-+ -.|....-+.+-++..+.+.+.|...+.. +|..+- |...+++.+|-.+|-+....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 3332222 22233333556666666677766655432 343332 34456777777777665433
No 390
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=48.43 E-value=2.1e+02 Score=25.83 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCch--hHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHh
Q 005969 9 FNSIISAYSRCGYVEDALRMFLYMINRGFE-PTQF--TFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLY 85 (667)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~--~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (667)
+..++-++...|+++.|+++.+.++++|.. |+.. +...++. ++....-....+.| -+.++.....+...-
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va------eev~~~A~~~~~ag-~~~e~~~~~~~~~l~ 158 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA------EEVANAALKAASAG-ESVEPYFLRVFLDLT 158 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH------HHHHHHHHHHHHcC-CCCChHHHHHHHHHH
Confidence 344456677788899999999998888765 4432 3333332 22233333444555 344444433333332
Q ss_pred hccCChhHHHHhhccCCCCCchhHHHHHHHHH---------hCCChHHHHHHHHHHHHC
Q 005969 86 GRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFG---------KHGFVEDCMFLFCELVRS 135 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~ 135 (667)
.....+|++.. .-|-.+...+. ..++...|+.++++..+.
T Consensus 159 ~~~dmpd~vrA----------Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 159 TEWDMPDEVRA----------KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred hcCCCChHHHH----------HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 22222222111 12333333342 345667888888887664
No 391
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.72 E-value=1e+02 Score=24.38 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHh
Q 005969 124 DCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKN 170 (667)
Q Consensus 124 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 170 (667)
+..+-++.+...++.|++......+++|-+.+|+..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666677777777777777777777777777777776543
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.67 E-value=1.4e+02 Score=23.78 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
.+.++|+.|...|+-..-+..|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888888777665677777777778888888888887764
No 393
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.27 E-value=88 Score=25.77 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=42.5
Q ss_pred HHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 005969 127 FLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG 191 (667)
Q Consensus 127 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (667)
++.+.+.+.|+++++.- ..++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34555667777766654 34566666666668888888888888777665555555566666553
No 394
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.74 E-value=3.2e+02 Score=27.53 Aligned_cols=116 Identities=16% Similarity=0.017 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHH---CCC-cCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHH
Q 005969 122 VEDCMFLFCELVR---SEV-ALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEK 197 (667)
Q Consensus 122 ~~~a~~~~~~m~~---~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 197 (667)
.++...++..... .|+ ..+......++..+ .|+...+..+++.....+...+......++...
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~----------- 219 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKR----------- 219 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhh-----------
Confidence 3455556655432 243 45555555555543 688888888777765442222222221111110
Q ss_pred hhccCCCCCchhHHHHHHHHHc---cCChhHHHHHHHHhHhCCcCCChhhHHHHHHHh
Q 005969 198 MFKDVEIRDVVSWNTIIGALAE---SENFGKALELYLRMSVDIVFPNQTTFVYVINSC 252 (667)
Q Consensus 198 ~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 252 (667)
.....++......++.++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 220 --~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 220 --AARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred --hhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 00011222234444555544 578999999999999988877755444444443
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.46 E-value=2.2e+02 Score=25.60 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHH
Q 005969 283 LVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLH 361 (667)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (667)
-+..|.+.-++.-|-..++++.+|=.. - ..+--|.+..+.+ -.++++-....++.-+......+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS-R-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeai------------- 200 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS-R-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAI------------- 200 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh-h-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHh-------------
Confidence 355566666666666666665554211 1 1222344444444 23333334444555444433322
Q ss_pred HHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHH
Q 005969 362 CLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNI 441 (667)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 441 (667)
.+...|++..|+..++.- ...-..-.+..+|+-..+|.+.....
T Consensus 201 --------------------ifta~GDMRQalNnLQst----------------~~g~g~Vn~enVfKv~d~PhP~~v~~ 244 (333)
T KOG0991|consen 201 --------------------IFTAQGDMRQALNNLQST----------------VNGFGLVNQENVFKVCDEPHPLLVKK 244 (333)
T ss_pred --------------------hhhccchHHHHHHHHHHH----------------hccccccchhhhhhccCCCChHHHHH
Confidence 234567777777755432 11111222334666667788887777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY 472 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 472 (667)
++..+. .+++++|.+++.++-+.|+.|...
T Consensus 245 ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 245 MLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 777654 567999999999999999887543
No 396
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.06 E-value=38 Score=23.94 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=14.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRG 36 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~ 36 (667)
+++.-+.++.--++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34444555555556666666666554
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.03 E-value=2.3e+02 Score=25.64 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHhccCCHHHHHHHHHHh
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALI-AVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~ 599 (667)
|..-+-++.+..+++.+.+=-++.++ +.||.+--. .+..+......+++|...+++.
T Consensus 47 ~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 47 YTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444455555555555555555444 355544222 2333344455556666655554
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.89 E-value=3.3e+02 Score=27.37 Aligned_cols=81 Identities=10% Similarity=-0.109 Sum_probs=43.2
Q ss_pred HHHHccCChhHHHHHHHHhHhCCcCCChhh--HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhc
Q 005969 215 GALAESENFGKALELYLRMSVDIVFPNQTT--FVYVINSCAGLQNSILGKSIHAKVIKNALECDVF--VGSALVDFYAKC 290 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 290 (667)
...++.|+.+-+.. +.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 34455666654444 445677766433 334455555666665 344445566555432 122344555667
Q ss_pred CChHHHHHHHhcc
Q 005969 291 DNLEGAHLCFSEI 303 (667)
Q Consensus 291 g~~~~a~~~~~~~ 303 (667)
|+.+.+..+++.-
T Consensus 79 g~~~~v~~Ll~~~ 91 (413)
T PHA02875 79 GDVKAVEELLDLG 91 (413)
T ss_pred CCHHHHHHHHHcC
Confidence 7777776666543
No 399
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.85 E-value=4.1e+02 Score=28.53 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCch-------HHHHHHHHHHHHhc
Q 005969 105 SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDL-------EFGEQIHGLVIKNG 171 (667)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~ 171 (667)
|...--.+|--|.+.|++++|.++...... ........|...+..+....+- +....-+++..+..
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 333444577888999999999999966543 3556677888889999875432 34444455544443
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.66 E-value=7.2e+02 Score=31.28 Aligned_cols=131 Identities=18% Similarity=0.090 Sum_probs=84.1
Q ss_pred hHHhhHHHHhhccCChhHHHHhhcc-CCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhccc
Q 005969 76 FVGTALLGLYGRHGCLDEVVSVFED-MPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
..+-.+...|+.-+++|+..-+... ...|+. ..-|-.....|++..|...|+.+.+.+ ++...+++-++......
T Consensus 1421 ~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1421 ALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcc
Confidence 3345556689999999998887763 333432 233445667899999999999998865 23367888888888888
Q ss_pred CchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHH
Q 005969 155 QDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTI 213 (667)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 213 (667)
|..+.+....+-....--+-....++.=+.+-.+.++++..+.... ..+..+|.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred cchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 8888777655554433222222233334455567777777666655 3455555554
No 401
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.32 E-value=2.7e+02 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHhCCChHHH
Q 005969 538 VITWTALISALGLNGFAQRA 557 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A 557 (667)
..+|.-|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34567777777777776543
No 402
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.29 E-value=68 Score=27.36 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccC----C-------HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh
Q 005969 554 AQRALEKFREMEFLGFKPDR-VALIAVLTACRHGG----L-------VREGMELFERMNRSYGVEPEMDHYHCVVDLLVR 621 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (667)
+++|+.-|++... +.|+. .++..+..+|...+ + +++|.+.|++.. ...|+..+|+.-++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv---~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV---DEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHh
Confidence 4556666666666 57764 46666666665433 3 344445555443 358999999988887653
Q ss_pred cCChHHHHHHHHh
Q 005969 622 YGHLKEAEKIITT 634 (667)
Q Consensus 622 ~g~~~~A~~~~~~ 634 (667)
-.+--.++-..
T Consensus 126 --ap~lh~e~~~~ 136 (186)
T PF06552_consen 126 --APELHMEIHKQ 136 (186)
T ss_dssp --HHHHHHHHHHS
T ss_pred --hHHHHHHHHHH
Confidence 23444444444
No 403
>PRK02287 hypothetical protein; Provisional
Probab=45.19 E-value=84 Score=26.53 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=31.6
Q ss_pred cchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHh
Q 005969 609 MDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIWR-TFLEGCQRCRIAKYDT 661 (667)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~~~~~~a~ 661 (667)
..+..++..++.-.|..++|.++++..+.-++....| .++..|.++++.++-.
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~ 160 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIV 160 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3455666666666677777777776666544433333 5666666666555443
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.95 E-value=28 Score=27.80 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=23.9
Q ss_pred ccCChhHHHHHHHHhHhCCcCCChhhHHHHHHH
Q 005969 219 ESENFGKALELYLRMSVDIVFPNQTTFVYVINS 251 (667)
Q Consensus 219 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 251 (667)
..|.-.+|..+|.+|...|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 456677899999999999999985 5555544
No 405
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.94 E-value=5.2e+02 Score=28.87 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 555 QRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
+.-.+.|.++.+---.-|..++..-..-+...|++..|.+++.++.+..|-.++...+..++..+...|.- --..+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 34445555555531123455555555666778899999999999988888888888888888888877744 33344444
Q ss_pred C
Q 005969 635 M 635 (667)
Q Consensus 635 m 635 (667)
+
T Consensus 1292 ~ 1292 (1304)
T KOG1114|consen 1292 W 1292 (1304)
T ss_pred h
Confidence 4
No 406
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.39 E-value=94 Score=20.20 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLL 478 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 478 (667)
+.-++.+.|++++|.+..+.+.+ +.|+......|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45567788888888888888887 467765544443
No 407
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=42.27 E-value=4e+02 Score=27.30 Aligned_cols=163 Identities=8% Similarity=0.007 Sum_probs=94.6
Q ss_pred CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 005969 400 NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSL 477 (667)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 477 (667)
..+.+....-+++..++...++.-++.+-.++.. .+-..|-.++..|... ..++-..+|+++.+..+ -|...-..|
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4555666667777777777777777777666653 5556677777887777 45667777777776432 223333334
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCC----chhHHhHHHHHHHhcCChHHHHHHHHhcCCC-----ChhhHHHHHHHH
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISS----DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-----NVITWTALISAL 548 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 548 (667)
...|-+ ++...+..+|.++...-+... -...|.-|...- ..+.+...++...+... ..+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444433 677777777776665432110 011222222211 34555555555555532 233444455667
Q ss_pred HhCCChHHHHHHHHHHHHc
Q 005969 549 GLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~ 567 (667)
....++++|++++..+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 7777888888888777665
No 408
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.95 E-value=2.6e+02 Score=25.17 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=36.1
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 005969 527 VKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 527 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 574 (667)
..+|+-.-+|.+.....++..|.+ +++++|.+++.++-+.|+.|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH
Confidence 445555556888888888877654 67999999999999999888644
No 409
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.81 E-value=2.4e+02 Score=25.21 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHhHH--HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP---DRVAL--IAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
.-+|.|+--|.-...+.+|.+.|.. +.|+.| |..++ ..-|+.....|+.++|.+....+... -+.-|...+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3455555444444444555554433 344555 23333 34566667888888888888777322 3333333333
Q ss_pred HHHH----HHhhcCChHHHHHHHHhCC
Q 005969 614 CVVD----LLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 614 ~l~~----~~~~~g~~~~A~~~~~~m~ 636 (667)
.|.. -+.|.|..++|+++...=.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222 2357778888888776543
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.61 E-value=3.2e+02 Score=25.79 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh----------hcCChHH
Q 005969 558 LEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV----------RYGHLKE 627 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 627 (667)
.++|+.+...++.|.-..|..+.-.+.+.=.+.+++.+|+.+..+ +.-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888999999999888888777788888889999999988433 233666776665 3588888
Q ss_pred HHHHHHhCC
Q 005969 628 AEKIITTMP 636 (667)
Q Consensus 628 A~~~~~~m~ 636 (667)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 888888775
No 411
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.55 E-value=5.5e+02 Score=28.44 Aligned_cols=56 Identities=21% Similarity=0.118 Sum_probs=38.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHH--HhccCCHHHHHHHHHH
Q 005969 543 ALISALGLNGFAQRALEKFREMEFLGFKP----DRVALIAVLTA--CRHGGLVREGMELFER 598 (667)
Q Consensus 543 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~ 598 (667)
.|+......|+.++|...++++......+ +..+-...+.. ....|+...+...+.+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 56778888999999999999988754333 22222333333 3467888888877765
No 412
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.17 E-value=1.8e+02 Score=31.07 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHhccCChhhHHHHHHHHHHh-CCCCCc
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY----------TFVSLLSACSKLCNLALGSSLHGLIKKT-EIISSD 506 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~ 506 (667)
+...++-.|....+++...++.+.++.- ||.. .|...++---+.|+-++|+...-.+.+. |...||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3444555566666777777777777652 3221 1222333333456666666665444443 433333
No 413
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.06 E-value=3.3e+02 Score=25.73 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----------cCChHH
Q 005969 456 LELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----------CGSIGS 525 (667)
Q Consensus 456 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 525 (667)
.++++.|.+.++.|.-..+.-+.-.+.+.=.+.....+|+.+.. |+.-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 56788888888999988888888888888888888888887764 34446666665553 355555
Q ss_pred HHHHHHhcCCCCh
Q 005969 526 SVKIFNEMTDRNV 538 (667)
Q Consensus 526 A~~~~~~~~~~~~ 538 (667)
..++++.-..-|+
T Consensus 337 nmkLLQ~yp~tdi 349 (370)
T KOG4567|consen 337 NMKLLQNYPTTDI 349 (370)
T ss_pred HHHHHhcCCCCCH
Confidence 5555554443333
No 414
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.98 E-value=72 Score=23.16 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=5.4
Q ss_pred hcCChhHHHHhhc
Q 005969 188 QCAGIWSAEKMFK 200 (667)
Q Consensus 188 ~~g~~~~A~~~~~ 200 (667)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444444
No 415
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=39.78 E-value=4.1e+02 Score=26.78 Aligned_cols=110 Identities=14% Similarity=0.017 Sum_probs=62.2
Q ss_pred HHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch---HHHHHHHHHHhc
Q 005969 214 IGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF---VGSALVDFYAKC 290 (667)
Q Consensus 214 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~ 290 (667)
+.+....|.++-+.-+++.- ..+.-+..|=++=+++.|-.|+++-++ .+.++|..|++. -.+.|+-+ +-.
T Consensus 88 LWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivK----yLvE~gad~~IanrhGhTcLmIa-~yk 160 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVK----YLVEHGADPEIANRHGHTCLMIA-CYK 160 (615)
T ss_pred hhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHH----HHHHcCCCCcccccCCCeeEEee-ecc
Confidence 44455667765544444332 234444445545666666667766554 444667665432 23333322 235
Q ss_pred CChHHHHHHHhccCCCCccc--HHHHHHHHhcCCChHHHHHH
Q 005969 291 DNLEGAHLCFSEISNKNIVS--WNALILGYASKSSPTSIFLL 330 (667)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~a~~~~ 330 (667)
|+.+-+..+++.=.+.+..+ -|+.+.-|+..|..+.++++
T Consensus 161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~L 202 (615)
T KOG0508|consen 161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLL 202 (615)
T ss_pred CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHH
Confidence 77888888887766654443 36777888888887744433
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.75 E-value=49 Score=22.31 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
.-.+|.+|...|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33467777788888888877777654
No 417
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=39.01 E-value=2e+02 Score=23.25 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFE 38 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 38 (667)
.+..++-.+...|+++.|+.+.+.++++|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 4556677788888888888888888888765
No 418
>PRK10941 hypothetical protein; Provisional
Probab=38.66 E-value=3.2e+02 Score=25.52 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.+.+-.+|.+.++++.|+...+.+.. +.|+ +.-+.--.-.|.+.|.+..|..=++...+...-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34455566666666666666666666 3443 3333333444566666666666666655553334444444333333
No 419
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.54 E-value=1.1e+02 Score=19.86 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=17.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 574 (667)
+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34456667777777777777776 366544
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.27 E-value=1.7e+02 Score=21.80 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=27.6
Q ss_pred HhCCChHHHHHHHHHHHH----cCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 549 GLNGFAQRALEKFREMEF----LGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~----~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.+.|++..|.+.+.+..+ .+..+. ....-.+.......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 355666666555544433 221111 112223444455667777777777776544
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.25 E-value=1.4e+02 Score=31.36 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=24.4
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Q 005969 146 GVIHGLSNEQDLEFGEQIHGLVIKNGF--DYELLVANSLVNMYFQCA 190 (667)
Q Consensus 146 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 190 (667)
+|+.+|...|++..+.++++.....+- +.-...+|..++-..+.|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~ 79 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRG 79 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcC
Confidence 666777777777777777766655431 112333444444444444
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.21 E-value=4.5e+02 Score=26.49 Aligned_cols=122 Identities=17% Similarity=0.032 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhc---CCCChhhHHHH
Q 005969 468 YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM---TDRNVITWTAL 544 (667)
Q Consensus 468 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l 544 (667)
..+......++..+ .|+...+..+++.+...+... +.. ...+++... .+.+...+..+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-t~~----------------~v~~~~~~~~~~~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI-TLE----------------LLEEALQKRAARYDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-CHH----------------HHHHHHhhhhhccCCCccHHHHH
Confidence 55555666665543 678888887777765432111 111 122222211 11222223334
Q ss_pred HHHHHh---CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC-----HHHHHHHHHHhHHhhCCCCCc
Q 005969 545 ISALGL---NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGL-----VREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 545 i~~~~~---~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~ 609 (667)
+.++.+ ..+.+.|+.++.+|.+.|..|....-..++.++-..|. ..-|...++.. +..|++--.
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~-~~~g~pe~~ 305 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV-ERIGMPEGR 305 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH-HHhCCcHHH
Confidence 444443 47899999999999999988886666666666554442 23344444444 444654433
No 423
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.03 E-value=4e+02 Score=28.23 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=41.9
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCC------CcccHHHHHHHHhcCCChHHHHHHHH----HHHcCCCCCHhhHHHHHHH
Q 005969 282 ALVDFYAKCDNLEGAHLCFSEISNK------NIVSWNALILGYASKSSPTSIFLLIE----LLQLGYRPNEFTFSHVLRS 351 (667)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~~l~~ 351 (667)
+|+.+|...|++-++.++++.+... -...+|..|+.+.+.|.++-.+++.. +.+..+.-|..||..+.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 5566666666666666666655431 12456666666677776654333332 3334566777777776665
Q ss_pred hhh
Q 005969 352 SLA 354 (667)
Q Consensus 352 ~~~ 354 (667)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 424
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.65 E-value=56 Score=22.34 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcc
Q 005969 103 RKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSN 153 (667)
Q Consensus 103 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 153 (667)
.|....++.++...++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45566778888888888888888888888888775 566666666666554
No 425
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.60 E-value=1.7e+02 Score=21.40 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
++|+-....|+..|+..|..+++...-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7778888888888888888888877777777777888887743
No 426
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.55 E-value=6.9e+02 Score=28.57 Aligned_cols=111 Identities=10% Similarity=0.155 Sum_probs=54.4
Q ss_pred hhHHhHHHHHHHhcC--ChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH---HHHHH
Q 005969 507 TFVCNMLIDMYGKCG--SIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL---IAVLT 581 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~---~~li~ 581 (667)
......++.+|.+.+ ++++|+.+..++.+.+...-...+...+-. -++-++|+...- +| -.++-
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fL---vDvn~Ly~~ALG--------~YDl~Lal~V 880 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFL---VDVNKLYDVALG--------TYDLELALMV 880 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheee---ccHHHHHHHHhh--------hcCHHHHHHH
Confidence 444556677777777 677777777776654333222222222211 112222222211 11 12333
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 582 ACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
|-..+.|+.|=+-+++++ ++ .+|...-| -|+ ...|++++|++-+.++
T Consensus 881 Aq~SQkDPKEYLPfL~~L-~~--l~~~~rry--~ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 881 AQQSQKDPKEYLPFLQEL-QK--LPPLYRRY--KID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHhccChHHHHHHHHHH-Hh--CChhheee--eHh--hhhCCHHHHHHHHHhh
Confidence 334456777777777766 33 33332211 222 2456788887776654
No 427
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=36.21 E-value=4.1e+02 Score=25.75 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=43.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-------NVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
...++..+...+.+.|.++.|...+..+.+. .+...-.-.+.+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777788888888888888888877642 233444445666777888888888877776
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.17 E-value=4.6e+02 Score=25.97 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhc-----CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC
Q 005969 376 LGSLMTSYAKSGLISDALAFVTAL-----NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE 432 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (667)
+.-+.+.|...|+++.|++.|.+. ........+..++.+-.-.|+|.+......+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 346778888999999999988775 122233344445555556666666655554443
No 429
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.12 E-value=1.1e+02 Score=22.29 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=28.5
Q ss_pred ccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHH
Q 005969 87 RHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVED 124 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 124 (667)
...+.+.|..+++.++.++..+|..+..++-..|+..-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 44567788888888888888888888888877765543
No 430
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.01 E-value=2.9e+02 Score=25.07 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=70.2
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh-HHHHHHHhhcCCh
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDRVAL-IAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHY-HCVVDLLVRYGHL 625 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 625 (667)
|....++..|+.-|-+.+. +.|+..+| ..=+.++.+..+++.+.+=-.+. ..+.|+..-- ..+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrra---lql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRA---LQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH---HhcChHHHHHHHHHHHHHHhhccc
Confidence 3445567788887777766 57887555 55566777788887776655544 2355555433 3345555566677
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 626 KEAEKIITTM-------PFPPNALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 626 ~~A~~~~~~m-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
++|...+.+. ++.|-...+..|..+=...=....++++.|
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7777777665 366777777777776544444455555444
No 431
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.96 E-value=1.9e+02 Score=23.81 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=36.9
Q ss_pred HHHHCCCcCChhhHHHHHHHhcc-cCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh
Q 005969 131 ELVRSEVALTESSFVGVIHGLSN-EQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI 192 (667)
Q Consensus 131 ~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (667)
.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345667666655433 3333333 344567888888888877666666655566666666644
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.50 E-value=33 Score=27.35 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=19.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCc
Q 005969 16 YSRCGYVEDALRMFLYMINRGFEPTQ 41 (667)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~p~~ 41 (667)
+...|.-.+|-.+|..|.++|.+||.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 34457777888888888888877764
No 433
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.21 E-value=4.3e+02 Score=25.32 Aligned_cols=80 Identities=6% Similarity=-0.108 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHhcCChhHHHHhhccCCC-CCchhHHHHHHHHHccCChhHHHHHHH
Q 005969 157 LEFGEQIHGLVIKNGF----DYELLVANSLVNMYFQCAGIWSAEKMFKDVEI-RDVVSWNTIIGALAESENFGKALELYL 231 (667)
Q Consensus 157 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 231 (667)
.+.|.+.++.....+. ..++.....++...++.|+.+.-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 5667777777666422 34555555566666666655444444444332 234445555666666666655555555
Q ss_pred HhHhC
Q 005969 232 RMSVD 236 (667)
Q Consensus 232 ~m~~~ 236 (667)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55553
No 434
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=34.19 E-value=3.2e+02 Score=24.86 Aligned_cols=120 Identities=10% Similarity=0.118 Sum_probs=67.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCc-cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSL-NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
.+|.++.++|+-+ +...+...++.|- +...+..... .-.-|..+++.++-.+ .-|--+|.-..
T Consensus 147 GVIgaLvk~dd~e----Vi~fLl~TeIVPl---CLrime~GSelSKtvA~fIlqKIlldD---------~GL~YiCqt~e 210 (293)
T KOG3036|consen 147 GVIGALVKNDDQE----VIRFLLTTEIVPL---CLRIMESGSELSKTVATFILQKILLDD---------VGLYYICQTAE 210 (293)
T ss_pred HHHHHHHhcCcHH----HHHHHHHhhhHHH---HHHHHhcccHHHHHHHHHHHHHHhhcc---------ccHHHHHHhHH
Confidence 4577777777766 5555555444331 1111111111 4455666777766444 22333344445
Q ss_pred ChhHHHHhhccCC-----CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHH
Q 005969 90 CLDEVVSVFEDMP-----RKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVI 148 (667)
Q Consensus 90 ~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 148 (667)
++-..-.+|..|. .|+.......|+.|.+-.+-..|.+.+..-.-.+.. ..+|..++
T Consensus 211 RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr--d~tfs~~l 272 (293)
T KOG3036|consen 211 RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR--DGTFSLLL 272 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc--cchHHHHH
Confidence 5666666666653 377778888888888887777777777765443322 23454444
No 435
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.01 E-value=1.3e+02 Score=20.33 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhh
Q 005969 15 AYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLL 48 (667)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 48 (667)
.+...|++-+|-++++.+......|....+..+|
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglI 41 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLI 41 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHH
Confidence 4556788889999998888653333333444443
No 436
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.71 E-value=3.5e+02 Score=24.17 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=9.6
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005969 616 VDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m 635 (667)
.....|.|+.++|.+.|.++
T Consensus 172 geL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 33334455555555555544
No 437
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.35 E-value=4.4e+02 Score=25.23 Aligned_cols=148 Identities=11% Similarity=-0.020 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHHhCCC---CCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-CChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEII---SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-RNVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
.+.+.+.++.....+.. ..++.....+.....+.|+.+.-..+++.... ++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45677777777775332 33566777777888888887776666666664 466677888999988889888888999
Q ss_pred HHHHcC-CCCCHhHHHHHHHHHhccCC--HHHHHHHHHHhHHhh--CCCCCcchhHHHHHHH----hhcCChHHHHHHHH
Q 005969 563 EMEFLG-FKPDRVALIAVLTACRHGGL--VREGMELFERMNRSY--GVEPEMDHYHCVVDLL----VRYGHLKEAEKIIT 633 (667)
Q Consensus 563 ~~~~~g-~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~ 633 (667)
.....+ +++.. . ..++.++...+. .+.+++++..-.... .+..+......++..+ +.....++..++++
T Consensus 226 ~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~ 303 (324)
T PF11838_consen 226 LLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFE 303 (324)
T ss_dssp HHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHH
T ss_pred HHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 888854 44433 3 334444442333 377777765422211 1222222455555543 33445666777775
Q ss_pred hCC
Q 005969 634 TMP 636 (667)
Q Consensus 634 ~m~ 636 (667)
.-+
T Consensus 304 ~~~ 306 (324)
T PF11838_consen 304 DKP 306 (324)
T ss_dssp HHC
T ss_pred hCc
Confidence 443
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.28 E-value=7.4e+02 Score=27.82 Aligned_cols=124 Identities=10% Similarity=0.155 Sum_probs=59.0
Q ss_pred ChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CcCChhhHHHHHHHhcccCch--HHHHHHH
Q 005969 90 CLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSE---VALTESSFVGVIHGLSNEQDL--EFGEQIH 164 (667)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~ 164 (667)
.++++..++.+-+ -|..|+..|...|+.++|+++|.+..... -.--...+-.++.-+...+.- +.+.+.-
T Consensus 493 ~vee~e~~L~k~~-----~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~ 567 (877)
T KOG2063|consen 493 DVEEIETVLKKSK-----KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYA 567 (877)
T ss_pred chHHHHHHHHhcc-----cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHh
Confidence 4555555554443 37777777777777777777777765421 011111222244444333333 4444444
Q ss_pred HHHHHhcCCCchHHH------------HHHHHHHHhcCChhHHHHhhccCCC----CCchhHHHHHHHHH
Q 005969 165 GLVIKNGFDYELLVA------------NSLVNMYFQCAGIWSAEKMFKDVEI----RDVVSWNTIIGALA 218 (667)
Q Consensus 165 ~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~ 218 (667)
++..+.+..--..++ ...+-.|......+-+..+++.+.. ++..-.+.++.-|+
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 444433211110000 1123345555666666666666542 34444555555443
No 439
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.13 E-value=1.8e+02 Score=29.16 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=43.1
Q ss_pred ChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCC-------------CcccHHHHHHHH-----
Q 005969 257 NSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNK-------------NIVSWNALILGY----- 318 (667)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~li~~~----- 318 (667)
.+++-.++++.+.+.|- ......-|+.|-|.+++++|..-+++-.+. .+.....++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g~---ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGG---ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHccC---CCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 34555555666655541 113344566777777777777766654321 112222333322
Q ss_pred hcCCChHHHHHHHHHHHcCCCC
Q 005969 319 ASKSSPTSIFLLIELLQLGYRP 340 (667)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~~~~~ 340 (667)
.++|.+++..+++-+...|+..
T Consensus 146 vRHGtpDarlL~e~~~a~G~~a 167 (480)
T TIGR01503 146 IRHGTPDARLLAEIILAGGFTS 167 (480)
T ss_pred ccCCCCcHHHHHHHHHHcCCCc
Confidence 3566666666777666666544
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.11 E-value=4.8e+02 Score=25.65 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=44.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhH
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR-HGGLVREGMELFERMN 600 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~ 600 (667)
.|..+.+.|.+..|+++.+-+......-|+.....+|+.|+ +++.++--+++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 36778899999999999999999654446777777788775 6788887777777663
No 441
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.92 E-value=1e+02 Score=20.84 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=8.7
Q ss_pred hCCChHHHHHHHHHHH
Q 005969 118 KHGFVEDCMFLFCELV 133 (667)
Q Consensus 118 ~~~~~~~a~~~~~~m~ 133 (667)
..|++-+|-++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 4556666666666654
No 442
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.82 E-value=7e+02 Score=28.13 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=6.4
Q ss_pred HHhhCCHHHHHHHH
Q 005969 383 YAKSGLISDALAFV 396 (667)
Q Consensus 383 ~~~~~~~~~a~~~~ 396 (667)
.+..|+.+-+.-++
T Consensus 662 A~~~g~~~iv~~Ll 675 (823)
T PLN03192 662 AMAEDHVDMVRLLI 675 (823)
T ss_pred HHHCCcHHHHHHHH
Confidence 34445554444444
No 443
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.82 E-value=1.4e+02 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=9.6
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 005969 112 IVSIFGKHGFVEDCMFLFCEL 132 (667)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m 132 (667)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555555443
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.63 E-value=5.1e+02 Score=25.74 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=39.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCcCChh--hHHHHHHHhc--ccCchHHHHHHHHHHHHh
Q 005969 114 SIFGKHGFVEDCMFLFCELVRSEVALTES--SFVGVIHGLS--NEQDLEFGEQIHGLVIKN 170 (667)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 170 (667)
..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-+.++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 555554 3444545553 566778888888877665
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.45 E-value=5.1e+02 Score=25.68 Aligned_cols=174 Identities=12% Similarity=0.043 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-C------------Ch
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-R------------NV 538 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~------------~~ 538 (667)
.+.-+...|...|+++.|.+.+.+.++.--.. -....|-.+|..-...|+|........+... | ..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 55666777888888888888888855431100 0234555566666667777777666665552 2 11
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLG------FKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
..+..+..-+ .+++..|.+.|-...-.. +.|..++....+.+++.-++-+--+.+...-.-+.=....+...
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 2222222222 234555554443332211 23333333333444444444333333333221111112233334
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHH
Q 005969 613 HCVVDLLVRYGHLKEAEKIITTMP--------FPPNALIWRTFLEG 650 (667)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~m~--------~~p~~~~~~~l~~~ 650 (667)
..+...| .+++...++++.+++ +.|...+..++|..
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~ 353 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRN 353 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHH
Confidence 4444433 456888999999885 66777777766654
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.44 E-value=1.7e+02 Score=24.12 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=30.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHH
Q 005969 105 SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIH 149 (667)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 149 (667)
-...-..++..+...++.-.|.++++.+.+.+...+..|.-..+.
T Consensus 19 ~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~ 63 (145)
T COG0735 19 LTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLK 63 (145)
T ss_pred cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 334455677778878777888888888888776665555333333
No 447
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.13 E-value=3.4e+02 Score=23.59 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc
Q 005969 378 SLMTSYAKSGLISDALAFVTAL 399 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~ 399 (667)
+++..|-+.-++.+..++++.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l 158 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKL 158 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888877654
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.57 E-value=1.5e+02 Score=25.14 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=35.1
Q ss_pred HHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhH
Q 005969 132 LVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWS 194 (667)
Q Consensus 132 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (667)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-|..+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455665555544 3333333334455677777777777666666655556666666665543
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.54 E-value=90 Score=16.75 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHH
Q 005969 554 AQRALEKFREMEF 566 (667)
Q Consensus 554 ~~~A~~~~~~~~~ 566 (667)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 450
>PHA02878 ankyrin repeat protein; Provisional
Probab=31.48 E-value=6e+02 Score=26.20 Aligned_cols=70 Identities=7% Similarity=-0.059 Sum_probs=30.1
Q ss_pred HHHHhHhCCcCCChhh---HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCChHHHHHHHhc
Q 005969 229 LYLRMSVDIVFPNQTT---FVYVINSCAGLQNSILGKSIHAKVIKNALECDVFV--GSALVDFYAKCDNLEGAHLCFSE 302 (667)
Q Consensus 229 ~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 302 (667)
+.+.+.+.|..++... -.+.+...+..|+.+-+. .+.+.|..++... -.+.+...++.|+.+-+..+++.
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ 223 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTE----LLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN 223 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 4455555555554322 123344444455544333 3334454443221 12233344455555555544443
No 451
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.24 E-value=3.5e+02 Score=23.50 Aligned_cols=104 Identities=8% Similarity=-0.020 Sum_probs=54.2
Q ss_pred CCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHH
Q 005969 101 MPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVAN 180 (667)
Q Consensus 101 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (667)
.+++..+.|......-++.-+.+++-+.+-- ..=.+++..|-+..++.+..++++.|-+..+..+.
T Consensus 102 ~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~---- 167 (233)
T PF14669_consen 102 SKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS---- 167 (233)
T ss_pred ccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Confidence 3334445566666655555444443333211 12234566677777888888888888776543210
Q ss_pred HHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 005969 181 SLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYL 231 (667)
Q Consensus 181 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 231 (667)
+.++....+. .+.-..-|.....+.++|..+.|+.+++
T Consensus 168 --LKGL~g~e~~-----------asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 168 --LKGLTGPEKL-----------ASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred --ccCccCcccc-----------CchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 0000000000 0122234555666777777777777766
No 452
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.52 E-value=5.5e+02 Score=25.50 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=38.8
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcc--CChhhHHHHHHHHHHh
Q 005969 445 ACAHNGDYKEVLELFKYMRAARIYPDNY--TFVSLLSACSKL--CNLALGSSLHGLIKKT 500 (667)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~--~~~~~a~~~~~~~~~~ 500 (667)
.+.+.+++..|.+++.++... ++++.. .+..+..+|... -+.++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999999887 555554 455555666543 4667788888876655
No 453
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.88 E-value=1.3e+02 Score=21.80 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=7.3
Q ss_pred hccCChhHHHHhhc
Q 005969 86 GRHGCLDEVVSVFE 99 (667)
Q Consensus 86 ~~~g~~~~a~~~~~ 99 (667)
++.|+++-+..+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44555555555555
No 454
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.86 E-value=1.1e+02 Score=23.67 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=9.8
Q ss_pred HHHHHHhcCChhHHHHhhccCC
Q 005969 182 LVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 182 l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
++.-|...|+.++|...++++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3334444455555555554443
No 455
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.00 E-value=4.3e+02 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=11.6
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 005969 545 ISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~ 565 (667)
|......|++++|++...++.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 444555566666665555543
No 456
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.96 E-value=1.2e+02 Score=30.29 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHHhhcCCh
Q 005969 548 LGLNGFAQRALEKFREMEFLGFKPDRVALIAV-LTACRHGGLVREGMELFERMNRSYGVEPE-MDHYHCVVDLLVRYGHL 625 (667)
Q Consensus 548 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 625 (667)
+...+.++.|+.++.+.++ +.||...|... ..++.+.+++..|+.=....++. .|+ ...|-.=..++.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHH
Confidence 3444556666666666666 35655444332 25566666666665554444332 122 11222222333344455
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 005969 626 KEAEKIITTMP-FPPNALIWRTFLEGCQRC 654 (667)
Q Consensus 626 ~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~ 654 (667)
.+|...|+... ..|+..-..-.+.-|-..
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 55555555552 556655555555554433
No 457
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.32 E-value=3.2e+02 Score=22.55 Aligned_cols=60 Identities=3% Similarity=0.031 Sum_probs=33.7
Q ss_pred hHhCCcCCChhhHHHHHHHhhc-cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 233 MSVDIVFPNQTTFVYVINSCAG-LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 233 m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
+.+.|++++..-. .++..+.. .+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455655544333 23333333 234567777777777777666666655555666665544
No 458
>PRK10941 hypothetical protein; Provisional
Probab=28.18 E-value=5e+02 Score=24.25 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.+.+-.+|.+.++++.|++..+.+..- .|+ +.-+.--.-.|.+.|.+..|..-++...+.-...|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 455566777788888888888887773 443 3334444445777777777777777776665444444444444433
No 459
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.10 E-value=8e+02 Score=26.60 Aligned_cols=192 Identities=10% Similarity=-0.045 Sum_probs=95.4
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHN 449 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 449 (667)
+..+...-+....+.++++.+...+..+ .......-.--+..++...|+.++|...|+.+..+ ...|..+... +.
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~--~L 387 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQ--RL 387 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHH--Hc
Confidence 3334444455555777777777777776 22222333444666666677777777777776543 2233333221 11
Q ss_pred CChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 450 GDYKE-VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 450 g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
|..-. ....... ....+..+ .-..-+..+...|....|...+..+.+.. +......+.......|..+.+..
T Consensus 388 g~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~----~~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 388 GEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEWANLVASR----SKTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred CCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCHHHHHH
Confidence 21100 0000000 00000000 01112333456677778887777766642 44455556666667777777766
Q ss_pred HHHhcCC------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 005969 529 IFNEMTD------RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDR 573 (667)
Q Consensus 529 ~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~ 573 (667)
....... .-+..|...+..+.+.-.++.++-.---..++++.|+.
T Consensus 461 ~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 461 ATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 5544332 11224555666666655666655444444456666653
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.08 E-value=2.5e+02 Score=20.81 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHcCChhHHHHHHHHHH----HcCCCCC--H--HHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 447 AHNGDYKEVLELFKYMR----AARIYPD--N--YTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~----~~g~~p~--~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
.+.|++..|.+.+.+.- ..+..+. . ...-.+.......|+.++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677777755554433 2222221 1 12222333455667777777777665544
No 461
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.57 E-value=79 Score=33.44 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHH
Q 005969 105 SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVI 168 (667)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 168 (667)
+...-.-++..|.+.|-.+.|.++.+.+-..- .....|..-+..+.+.|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455555555555555555555443221 122344455555555555555444444443
No 462
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.42 E-value=8.9e+02 Score=26.92 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=87.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcch-HHHHHHHHHHcCChhHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVS-WNIVIAACAHNGDYKEV 455 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A 455 (667)
.+....+...|+.++...+-.-+ .-|..++.-++..+.+++|.+++..-..+...- |... .....+...
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~------~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~----Li~~~p~~t 577 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLI------KDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPE----LITHSPKET 577 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhH----HHhcCcHHH
Confidence 34555566667776666543322 245667777788888888888877664322111 1100 011222333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 456 LELFKYMRAARIYPDNYTFVSLLSACSKL---CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 456 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
...+..+.+ .-...-...++..+.+. .....+...++.....-... ++..+|.++..|++..+-+.- -.++.
T Consensus 578 V~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~-~~~ihn~ll~lya~~~~~~ll-~~le~ 652 (911)
T KOG2034|consen 578 VSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMT-NPAIHNSLLHLYAKHERDDLL-LYLEI 652 (911)
T ss_pred HHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCc-CHHHHHHHHHHhhcCCccchH-HHHHH
Confidence 333332222 12222233344444443 23344555555554433333 788888888888765543333 33332
Q ss_pred cC-CCChh--hHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCCCC
Q 005969 533 MT-DRNVI--TWTALISALGLNGF------AQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 533 ~~-~~~~~--~~~~li~~~~~~~~------~~~A~~~~~~~~~~g~~p~ 572 (667)
.. .++-. -....++.|.+.+. +.-++++|.++++.-...|
T Consensus 653 ~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d 701 (911)
T KOG2034|consen 653 IKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD 701 (911)
T ss_pred HhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC
Confidence 22 22222 22334555555443 3445566666655433333
No 463
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=2.2e+02 Score=23.84 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=28.4
Q ss_pred CCCCCcchhHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCh
Q 005969 604 GVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMPFPPNALIW-RTFLEGCQRCRIA 657 (667)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~l~~~~~~~~~~ 657 (667)
|.+--..+..+++.++.-.|..++|.+++.....-++..-. ..++..|..+-+.
T Consensus 110 Gkp~kLss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s 164 (179)
T COG2042 110 GKPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDS 164 (179)
T ss_pred CCcchhchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccch
Confidence 33334455555666666666666666666666543332222 2455566555544
No 464
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.27 E-value=2.1e+02 Score=27.02 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 183 VNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
+..+.+.+++....+.++.+. ....-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333444444444444444432 333444567777888999999988887664
No 465
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=27.00 E-value=4.9e+02 Score=27.19 Aligned_cols=111 Identities=7% Similarity=-0.060 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCc--CChhhHHHHHHHhc-ccCchHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhcCChhHHHHhhcc
Q 005969 126 MFLFCELVRSEVA--LTESSFVGVIHGLS-NEQDLEFGEQIHGLVIKNGFD-YELLVANSLVNMYFQCAGIWSAEKMFKD 201 (667)
Q Consensus 126 ~~~~~~m~~~~~~--~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 201 (667)
.+.+..|...|.+ |....++.+...|. ..|+..+|........-...+ ......-++...+.+.|...+|.-++..
T Consensus 195 ~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeeh
Confidence 3444555444433 33334455555554 356666666665544332111 1123344566666777777777666544
Q ss_pred CCC-CCch--hHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 202 VEI-RDVV--SWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 202 ~~~-~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
... -+.. .+-.+-..++..+++...+.-|+.-.+.
T Consensus 275 A~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 275 ALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred hccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 331 1111 1333444555555666555566655544
No 466
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=26.87 E-value=1.5e+02 Score=26.15 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhccC---------ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 472 YTFVSLLSACSKLC---------NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 472 ~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
.-|..+..+|.+.| +.+...++++.+.+.|...--+..|.++|+--.-.-++++..+++..++
T Consensus 164 eE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 164 EEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 34556666666654 3456677777777777665566777777766665667777777776543
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.75 E-value=1.4e+02 Score=23.21 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=13.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCcCChh
Q 005969 113 VSIFGKHGFVEDCMFLFCELVRSEVALTES 142 (667)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 142 (667)
+..+...+..-.|.++++.+.+.+..++..
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~ 36 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLA 36 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHH
Confidence 333333344444555555554444333333
No 468
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.74 E-value=2.3e+02 Score=21.96 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=14.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 005969 12 IISAYSRCGYVEDALRMFLYMINRG 36 (667)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~ 36 (667)
+|.-+.++...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455555566666666666666553
No 469
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.62 E-value=3.3e+02 Score=21.73 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCCHHHHHHHHH
Q 005969 555 QRALEKFREMEFLGFKPDRV-ALIAVLTACRHGGLVREGMELFE 597 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~ 597 (667)
++..++|..|.++|+-.... .|......+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33566777777777665533 55666666667777777777765
No 470
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=26.59 E-value=5.5e+02 Score=24.17 Aligned_cols=63 Identities=5% Similarity=0.035 Sum_probs=30.8
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhHHh
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPNALIWRTFLEGCQRCRIAKYDT 661 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~~~~~~~a~ 661 (667)
+...++-.++..+...+++.+++.+++.+-.++++... ..-|...|..+|.....+||.+..+
T Consensus 192 l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 192 LVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 33334444555555555555555555555555554442 2234455555555555555544443
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.51 E-value=5e+02 Score=23.66 Aligned_cols=59 Identities=10% Similarity=-0.020 Sum_probs=39.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc-ccCchHHHHHHHHHHHH
Q 005969 111 SIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS-NEQDLEFGEQIHGLVIK 169 (667)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 169 (667)
.++...-+.|+++++++.+.++...+...+..-.+.+-.+|. .-|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 456667778889999999998888877777777777666664 33445555666655544
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.46 E-value=2e+02 Score=27.23 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 82 LGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVR 134 (667)
Q Consensus 82 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (667)
+..+.+.++.....+.++.+. ....-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444444444444444432 233344556667778888888888777654
No 473
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.36 E-value=5.2e+02 Score=28.58 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHH
Q 005969 313 ALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISD 391 (667)
Q Consensus 313 ~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (667)
++|.-+.+.|-++ |+..+++=. .-.......|+++.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~-------------------------------------------tRF~LaLe~gnle~ 661 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER-------------------------------------------TRFELALECGNLEV 661 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc-------------------------------------------hheeeehhcCCHHH
Q ss_pred HHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 005969 392 ALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDN 471 (667)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 471 (667)
|++.-..+ .+..+|..|.....+.|+.+-|+-.|++.+.
T Consensus 662 ale~akkl----------------------------------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn------- 700 (1202)
T KOG0292|consen 662 ALEAAKKL----------------------------------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN------- 700 (1202)
T ss_pred HHHHHHhc----------------------------------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh-------
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhC
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLN 551 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 551 (667)
|..|--.|.-.|+.++..++.+.+...+... .....-.-.|++++-.++++....-+..-..+.. +
T Consensus 701 --fekLsfLYliTgn~eKL~Km~~iae~r~D~~-------~~~qnalYl~dv~ervkIl~n~g~~~laylta~~-----~ 766 (1202)
T KOG0292|consen 701 --FEKLSFLYLITGNLEKLSKMMKIAEIRNDAT-------GQFQNALYLGDVKERVKILENGGQLPLAYLTAAA-----H 766 (1202)
T ss_pred --hhheeEEEEEeCCHHHHHHHHHHHHhhhhhH-------HHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhh-----c
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 005969 552 GFAQRALEKFREMEFLGFK 570 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~ 570 (667)
|.-++|.++.++..+.+..
T Consensus 767 G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 767 GLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred CcHHHHHHHHHhhccccCC
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.33 E-value=2.3e+02 Score=24.14 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 005969 259 ILGKSIHAKVIKNALECDVFVGSALVDFYAKCD 291 (667)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 291 (667)
-.|.++++.+.+.+..++..|.-.-+..+.+.|
T Consensus 42 lSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 42 ISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444444444444333333334444444
No 475
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.32 E-value=3.2e+02 Score=23.78 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC------CCchhHHHHHH-HHHhCCChH--HHH
Q 005969 56 VEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR------KSLVTWNSIVS-IFGKHGFVE--DCM 126 (667)
Q Consensus 56 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~-~~~~~~~~~--~a~ 126 (667)
+++.++..++.+.. .-+-...+.|++++|..-++.+.+ .-...|..+.. +++.++.-+ +|.
T Consensus 20 EE~l~lsRei~r~s----------~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVRLS----------GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Q ss_pred HHHHHHHHCCCcCCh---hhHHHHHHHhcc--------------cCchHHHHHHHHHHHH
Q 005969 127 FLFCELVRSEVALTE---SSFVGVIHGLSN--------------EQDLEFGEQIHGLVIK 169 (667)
Q Consensus 127 ~~~~~m~~~~~~~~~---~~~~~li~~~~~--------------~~~~~~a~~~~~~~~~ 169 (667)
-++..+...+++... ..+..-|.+.+. .|+++.|.+.++.|.+
T Consensus 90 ~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 476
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.23 E-value=5e+02 Score=23.58 Aligned_cols=19 Identities=5% Similarity=0.382 Sum_probs=10.6
Q ss_pred HcCChhHHHHHHHHHHHcC
Q 005969 448 HNGDYKEVLELFKYMRAAR 466 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g 466 (667)
..+++.+|+++|++.....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455666666666655443
No 477
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.22 E-value=6.9e+02 Score=28.76 Aligned_cols=164 Identities=13% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHH--------hCCCCCChhH-----
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLK--------NGLFCADAFV----- 77 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~----- 77 (667)
.+..+|...|+.-+|+..|.+... ...+...+++...+ ..+-.|++..
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S-------------------g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhY 985 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS-------------------GFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHY 985 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh-------------------ccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHH
Q ss_pred HhhHHHHhhccCChhHHHHhhccCCC------CCch-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHH
Q 005969 78 GTALLGLYGRHGCLDEVVSVFEDMPR------KSLV-TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHG 150 (667)
Q Consensus 78 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 150 (667)
|...++.+-+.+-.|++.++.....+ |+.. +++.+.+-....|.+.+|.+.+-+-.. ..-.......++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHH
Q ss_pred hcccCch------------HHHHH-HHHHHHHhcCCCchHHHHHHHHHHHhcCChhHH
Q 005969 151 LSNEQDL------------EFGEQ-IHGLVIKNGFDYELLVANSLVNMYFQCAGIWSA 195 (667)
Q Consensus 151 ~~~~~~~------------~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 195 (667)
+...|++ ++..+ +++...+.........|+.|-.-+...+++.+|
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rka 1121 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKA 1121 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHH
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.18 E-value=2.7e+02 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 492 SLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
++|+.....|+.- |+..|..+++...-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~-dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPM-DPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCc-ChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555555555444 55555555555555445555555555443
No 479
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.99 E-value=2.9e+02 Score=28.49 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=35.5
Q ss_pred hhHHHHhhccCChhHHHHhhccCCC--CCchhH---HHHHHHHHhCCChHHHHHHHHHHHHC
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPR--KSLVTW---NSIVSIFGKHGFVEDCMFLFCELVRS 135 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (667)
..|+.-|.+.+++++|..++..|.= -....| +.+++.+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3577789999999999999988852 122333 34444555554444555555555543
No 480
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.82 E-value=6.5e+02 Score=24.79 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=38.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCChhhHHHHHHHHHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS-KLCNLALGSSLHGLIKK 499 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 499 (667)
|..+.+.|-+..|+++-+-+......-|+.....+|..|+ +.++.+-..++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566778888888888888887654446666666666654 56677767777666544
No 481
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.81 E-value=1.7e+02 Score=20.01 Aligned_cols=47 Identities=6% Similarity=-0.073 Sum_probs=22.8
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 536 RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 536 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
|....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3444455555555555555666666666665553 3333443333333
No 482
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.18 E-value=3.8e+02 Score=21.85 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 554 AQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..+.+.+++.+.+.. .|+ ......|.-++.+.+.++.++++++.+
T Consensus 51 v~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 344455555555421 222 223333444555666666666665555
No 483
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.06 E-value=3.8e+02 Score=21.84 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=50.3
Q ss_pred CCCHhHHHHHHHHHhccCC---HHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH
Q 005969 570 KPDRVALIAVLTACRHGGL---VREGMELFERMNRSYGVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALI 643 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 643 (667)
.+...+-..+.+++.++.+ ..+...+++++.++ -.|+ ......|.-++.|.|+++.+.++++.+ ...||..-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 5666677778888888765 45567788877542 2333 234456677788999999999999887 34555443
Q ss_pred H
Q 005969 644 W 644 (667)
Q Consensus 644 ~ 644 (667)
-
T Consensus 107 a 107 (149)
T KOG3364|consen 107 A 107 (149)
T ss_pred H
Confidence 3
No 484
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.96 E-value=6.5e+02 Score=24.54 Aligned_cols=113 Identities=10% Similarity=0.075 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhh-----CCCCCcc
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSY-----GVEPEMD 610 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 610 (667)
+.+.+-.++.+.+.....+++..+.... ..|.. .....++..|.+.+++..+..+++.-+... ..+|...
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 3444555555555555544444443332 22221 123345666667777766666555432221 1222211
Q ss_pred hhHHHHH--HHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005969 611 HYHCVVD--LLVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653 (667)
Q Consensus 611 ~~~~l~~--~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 653 (667)
..-.+-. .|.-.+++++|..+++..-..|...+-+..+.+|.+
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkk 227 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKK 227 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1111111 123456888898888887666766666666666543
No 485
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=24.52 E-value=7.4e+02 Score=24.97 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHH
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
+-...+.++.+.|+...+.-+.+.+
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHh
Confidence 4445555555555555544444444
No 486
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.31 E-value=8e+02 Score=25.32 Aligned_cols=127 Identities=12% Similarity=0.071 Sum_probs=64.7
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHH
Q 005969 464 AARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTA 543 (667)
Q Consensus 464 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 543 (667)
..|+..+......++... .|+...+...++.+..... +.. ..+.+.+++.. ........
T Consensus 191 ~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~---~~I-------------t~e~V~~~l~~---~~~~~i~~ 249 (472)
T PRK14962 191 AEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSE---GKI-------------TLETVHEALGL---IPIEVVRD 249 (472)
T ss_pred HcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC---CCC-------------CHHHHHHHHcC---CCHHHHHH
Confidence 446666666666665532 4666666666665443210 000 11112222211 12233344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH--HH----HHHHHHHhHHhhCCCCCcchhH
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV--RE----GMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~--~~----A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
++.+. ..++.+.|+.++.+|...|..|....-..+..++-.-|.- .. +...++.. +..|++-......
T Consensus 250 li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~-~~i~~~e~~~~l~ 323 (472)
T PRK14962 250 YINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNIL-REIKFAEEKRLVC 323 (472)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH-HHhCCcchHHHHH
Confidence 45444 4578999999999999988888766544444444333322 22 23333333 4446665554433
No 487
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.06 E-value=5e+02 Score=24.73 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=23.2
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
.+..+..+.|+..+|.+.++.+.+.-....-......|+.++....-+.+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666666655544211111122334555554444333333
No 488
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.06 E-value=3.8e+02 Score=21.45 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHH
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFN 531 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 531 (667)
...++|..|...++-..-+..|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777776655455566666666777777777777765
No 489
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.92 E-value=3.2e+02 Score=20.63 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHH
Q 005969 558 LEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFE 597 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 597 (667)
.+.+++....+....+-....|.-.|++.|+.+.|.+-|+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHH
Confidence 3344444443322222223334444555566555555555
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.82 E-value=2.3e+02 Score=21.96 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=26.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444555566677777777777666666655555555554443
No 491
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.73 E-value=1.6e+02 Score=20.85 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK 483 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 483 (667)
.-.|+.+.+.+++++..+.|..|.......+..+..+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3468888899999998888878777766666655433
No 492
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=22.32 E-value=2.3e+02 Score=21.02 Aligned_cols=35 Identities=6% Similarity=0.249 Sum_probs=25.2
Q ss_pred ccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCC
Q 005969 87 RHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 121 (667)
..-+.+.+..+++.++..+..+|..+..++-..|.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34566777888888887788888888887765443
No 493
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.24 E-value=1.2e+03 Score=26.64 Aligned_cols=91 Identities=8% Similarity=-0.109 Sum_probs=45.7
Q ss_pred cchhHHHHHHHhhcCChhHHH-HHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005969 405 VVPANIIAGIYNRTGQYNETV-KLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK 483 (667)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 483 (667)
...-...+.++...+..+.+. .+...+..++...-...+.++...+. +++...+..+.+ .|+...-...+.++.+
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhc
Confidence 333344444444444433321 23333444555444555666666554 345555555543 4566666666666666
Q ss_pred cCChhhHHHHHHHHHH
Q 005969 484 LCNLALGSSLHGLIKK 499 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~ 499 (667)
......+...+..+.+
T Consensus 865 ~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 865 WPGDPAARDALTTALT 880 (897)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 5334455555555554
No 494
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.08 E-value=3.7e+02 Score=20.66 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=11.1
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 005969 112 IVSIFGKHGFVEDCMFLFCEL 132 (667)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m 132 (667)
++..|...++.++|.+.+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 344445555555555555554
No 495
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=7.3e+02 Score=24.00 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc
Q 005969 378 SLMTSYAKSGLISDALAFVTAL 399 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~ 399 (667)
.++..|...+++.+|+.+...+
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L 154 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDL 154 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6888999999999998876554
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.92 E-value=6.1e+02 Score=23.78 Aligned_cols=163 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhc
Q 005969 28 MFLYMINRG--------FEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFE 99 (667)
Q Consensus 28 ~~~~m~~~~--------~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 99 (667)
+|..+.+.| +..|...++.++.-.....++--+-.++..+.++-..-...+..+..-|++-++.+.+.+..+
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred cCCC------CCchhHHHHHH---HHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc--ccCchHHHHHHHHHHH
Q 005969 100 DMPR------KSLVTWNSIVS---IFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS--NEQDLEFGEQIHGLVI 168 (667)
Q Consensus 100 ~~~~------~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~ 168 (667)
+.-+ -....+-+.++ .|....-+++-++..+.|.+.|-..+...--..-.+.. ...++.+|-.++-+..
T Consensus 140 ~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 140 RLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Q ss_pred HhcCCCchHHHHHHHHHHHhcC
Q 005969 169 KNGFDYELLVANSLVNMYFQCA 190 (667)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~~~g 190 (667)
..=-......|...+.-..-+|
T Consensus 220 ~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 220 PTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred ccccccccccHHHHHHHHHHhh
No 497
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.69 E-value=1.2e+03 Score=26.55 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=14.0
Q ss_pred hccCCCCcccHHHHHHHHhcCCChHHHHHHHH
Q 005969 301 SEISNKNIVSWNALILGYASKSSPTSIFLLIE 332 (667)
Q Consensus 301 ~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~ 332 (667)
..+.+++..+-...+..+.+.+..++...+..
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~ 659 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTPPGFGPALVA 659 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 33334444444444444444444443333333
No 498
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.36 E-value=3.4e+02 Score=28.23 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=48.3
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHH
Q 005969 482 SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRAL 558 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~ 558 (667)
...|+...|...+.......... .-...-.|.+...+.|...+|-.++.... ...+-++-.+.+++....++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34566666766666555443222 12223334455555566666666655443 223345556667777777777777
Q ss_pred HHHHHHHHc
Q 005969 559 EKFREMEFL 567 (667)
Q Consensus 559 ~~~~~~~~~ 567 (667)
+-|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 777777664
No 499
>PHA02878 ankyrin repeat protein; Provisional
Probab=21.16 E-value=9.1e+02 Score=24.84 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCchH---HHHHHHHHHhcCChHHHHHHHhccC
Q 005969 263 SIHAKVIKNALECDVFV---GSALVDFYAKCDNLEGAHLCFSEIS 304 (667)
Q Consensus 263 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~ 304 (667)
++.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-.
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga 192 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA 192 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence 36666777777665432 2345555667777777766665433
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.14 E-value=2.2e+02 Score=22.30 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=26.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005969 441 IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485 (667)
Q Consensus 441 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 485 (667)
.++..+...+..-.|.++++.+.+.|...+..|.-.-|..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555566667777778888777776666665444444444433
Done!