Query 005969
Match_columns 667
No_of_seqs 568 out of 2710
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 12:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.3E-38 2.2E-42 332.1 40.5 494 85-650 63-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-36 8.4E-41 319.9 37.3 470 187-666 64-575 (597)
3 4g26_A Pentatricopeptide repea 100.0 5E-28 1.7E-32 243.7 20.3 184 437-622 27-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.3E-28 1.8E-32 243.5 20.0 184 107-290 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1E-22 3.5E-27 202.6 37.9 371 215-655 7-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2E-22 6.7E-27 200.6 37.4 343 251-666 8-364 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.5E-20 2.6E-24 189.6 35.9 442 107-601 7-477 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.3E-20 1.5E-24 191.5 31.9 430 75-574 6-483 (514)
9 3fp2_A TPR repeat-containing p 99.9 5E-19 1.7E-23 184.5 31.2 431 106-602 25-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.8E-18 9.6E-23 174.4 35.5 304 206-566 25-357 (450)
11 3fp2_A TPR repeat-containing p 99.8 6.3E-19 2.1E-23 183.7 31.3 414 210-635 28-488 (537)
12 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.5E-19 154.9 57.5 549 6-599 543-1247(1630)
13 2y4t_A DNAJ homolog subfamily 99.8 3.6E-18 1.2E-22 173.6 27.8 283 374-665 27-353 (450)
14 1xi4_A Clathrin heavy chain; a 99.8 3.9E-14 1.3E-18 151.3 54.1 363 54-457 1000-1376(1630)
15 1b89_A Protein (clathrin heavy 99.8 8.4E-17 2.9E-21 153.7 27.1 344 86-533 14-369 (449)
16 3hym_B Cell division cycle pro 99.8 9.9E-16 3.4E-20 148.4 30.5 284 370-658 19-322 (330)
17 3ieg_A DNAJ homolog subfamily 99.7 3.4E-15 1.2E-19 146.4 31.2 319 277-653 3-352 (359)
18 3ieg_A DNAJ homolog subfamily 99.7 1.8E-15 6.2E-20 148.5 28.3 285 373-666 3-331 (359)
19 1b89_A Protein (clathrin heavy 99.7 3E-15 1E-19 143.1 26.9 331 8-407 34-377 (449)
20 1fch_A Peroxisomal targeting s 99.7 2.4E-15 8.2E-20 148.2 23.6 279 382-666 34-355 (368)
21 3hym_B Cell division cycle pro 99.7 1.8E-14 6.1E-19 139.5 28.8 239 381-625 64-321 (330)
22 2xm6_A Protein corresponding t 99.7 3.2E-13 1.1E-17 138.2 38.6 156 437-602 256-432 (490)
23 2xm6_A Protein corresponding t 99.7 2.2E-13 7.6E-18 139.3 37.2 348 174-568 37-433 (490)
24 2ooe_A Cleavage stimulation fa 99.7 2.7E-13 9.3E-18 140.2 38.1 163 436-602 321-492 (530)
25 4eqf_A PEX5-related protein; a 99.7 1.7E-15 5.7E-20 149.1 20.3 256 406-665 66-351 (365)
26 4eqf_A PEX5-related protein; a 99.7 4.9E-15 1.7E-19 145.7 22.6 256 376-635 68-353 (365)
27 3spa_A Mtrpol, DNA-directed RN 99.7 6.8E-17 2.3E-21 166.9 9.0 121 507-628 127-255 (1134)
28 3spa_A Mtrpol, DNA-directed RN 99.7 5.4E-17 1.8E-21 167.6 8.1 147 75-221 127-286 (1134)
29 1fch_A Peroxisomal targeting s 99.7 9E-15 3.1E-19 144.1 23.4 282 16-302 35-355 (368)
30 2ooe_A Cleavage stimulation fa 99.7 4.5E-13 1.6E-17 138.5 36.1 127 438-567 358-492 (530)
31 3cv0_A Peroxisome targeting si 99.7 1.8E-14 6.3E-19 139.2 23.8 262 4-304 19-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.6 1.8E-14 6.3E-19 135.3 22.3 254 380-643 6-270 (291)
33 3cv0_A Peroxisome targeting si 99.6 2.4E-14 8.2E-19 138.4 22.6 255 375-635 23-312 (327)
34 3mkr_A Coatomer subunit epsilo 99.6 8.8E-14 3E-18 130.7 24.5 224 281-574 38-269 (291)
35 2pl2_A Hypothetical conserved 99.5 1.2E-12 4E-17 117.4 19.8 194 435-635 4-211 (217)
36 4g1t_A Interferon-induced prot 99.5 2.4E-11 8.2E-16 123.9 30.9 193 436-644 247-469 (472)
37 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-11 4.8E-16 123.8 25.9 372 148-602 10-421 (452)
38 3u4t_A TPR repeat-containing p 99.5 2.3E-11 7.8E-16 113.8 24.5 237 411-651 9-265 (272)
39 2ho1_A Type 4 fimbrial biogene 99.4 1.7E-11 5.8E-16 113.2 22.2 204 436-645 37-246 (252)
40 3uq3_A Heat shock protein STI1 99.4 6.3E-12 2.1E-16 116.5 19.4 217 406-635 6-233 (258)
41 2pl2_A Hypothetical conserved 99.4 6.6E-12 2.2E-16 112.5 18.7 192 403-599 3-211 (217)
42 4g1t_A Interferon-induced prot 99.4 9.5E-11 3.2E-15 119.5 29.8 266 387-667 152-456 (472)
43 3uq3_A Heat shock protein STI1 99.4 1.2E-11 4.1E-16 114.6 20.8 216 374-602 6-236 (258)
44 2vq2_A PILW, putative fimbrial 99.4 1.7E-11 5.8E-16 110.9 20.6 207 436-648 8-222 (225)
45 3e4b_A ALGK; tetratricopeptide 99.4 4.9E-11 1.7E-15 119.8 25.9 243 12-302 9-276 (452)
46 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.7E-12 5.9E-17 121.7 13.6 239 415-663 15-268 (275)
47 2q7f_A YRRB protein; TPR, prot 99.4 1.3E-11 4.5E-16 113.2 17.5 196 434-635 21-219 (243)
48 2ho1_A Type 4 fimbrial biogene 99.4 6.2E-11 2.1E-15 109.3 21.9 191 410-602 42-238 (252)
49 3u4t_A TPR repeat-containing p 99.4 3.3E-11 1.1E-15 112.6 20.2 238 376-618 6-264 (272)
50 2vq2_A PILW, putative fimbrial 99.4 5.2E-11 1.8E-15 107.6 20.9 168 434-602 40-211 (225)
51 2q7f_A YRRB protein; TPR, prot 99.4 2E-11 7E-16 111.9 17.2 190 409-602 27-222 (243)
52 1ouv_A Conserved hypothetical 99.4 2.6E-10 8.9E-15 106.5 24.9 216 375-635 8-248 (273)
53 1ouv_A Conserved hypothetical 99.4 2.3E-10 7.7E-15 107.0 24.1 218 435-666 5-247 (273)
54 2h6f_A Protein farnesyltransfe 99.3 1.9E-10 6.4E-15 111.7 22.8 235 411-653 103-365 (382)
55 2h6f_A Protein farnesyltransfe 99.3 1.9E-10 6.5E-15 111.7 21.7 239 374-620 98-364 (382)
56 4a1s_A PINS, partner of inscut 99.3 1.6E-11 5.6E-16 122.6 14.3 259 377-635 52-369 (411)
57 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.6E-10 5.5E-15 108.2 20.2 212 448-666 17-240 (275)
58 3ro2_A PINS homolog, G-protein 99.3 2.4E-11 8E-16 117.7 13.7 258 378-635 10-329 (338)
59 3sf4_A G-protein-signaling mod 99.3 5.3E-11 1.8E-15 118.7 16.6 284 375-658 11-364 (406)
60 4a1s_A PINS, partner of inscut 99.2 3.4E-11 1.2E-15 120.3 11.9 259 408-666 51-368 (411)
61 4e6h_A MRNA 3'-END-processing 99.2 3.2E-08 1.1E-12 102.7 34.2 462 54-585 47-586 (679)
62 3sf4_A G-protein-signaling mod 99.2 7.3E-11 2.5E-15 117.7 13.9 261 406-666 10-332 (406)
63 3vtx_A MAMA; tetratricopeptide 99.2 8E-10 2.7E-14 96.1 18.6 160 435-599 4-167 (184)
64 4e6h_A MRNA 3'-END-processing 99.2 8.6E-08 2.9E-12 99.6 36.2 214 435-652 342-585 (679)
65 3ulq_A Response regulator aspa 99.2 4.1E-10 1.4E-14 111.1 18.3 225 442-666 109-364 (383)
66 3vtx_A MAMA; tetratricopeptide 99.2 1.9E-09 6.4E-14 93.7 20.2 167 470-641 4-174 (184)
67 3ro2_A PINS homolog, G-protein 99.2 1.1E-10 3.9E-15 112.8 13.5 258 409-666 9-328 (338)
68 4abn_A Tetratricopeptide repea 99.2 9.1E-10 3.1E-14 111.3 19.6 209 420-636 83-319 (474)
69 4abn_A Tetratricopeptide repea 99.2 5.3E-10 1.8E-14 113.0 17.3 206 388-599 83-318 (474)
70 3nf1_A KLC 1, kinesin light ch 99.2 3.8E-10 1.3E-14 107.7 15.5 230 437-666 28-303 (311)
71 2ond_A Cleavage stimulation fa 99.1 3.9E-09 1.3E-13 100.3 20.7 207 390-600 33-268 (308)
72 2ond_A Cleavage stimulation fa 99.1 1.3E-08 4.4E-13 96.7 23.7 209 422-635 33-267 (308)
73 3q15_A PSP28, response regulat 99.1 7E-09 2.4E-13 101.9 21.4 297 370-666 7-361 (378)
74 3ulq_A Response regulator aspa 99.1 2.2E-08 7.6E-13 98.6 25.0 235 283-600 109-366 (383)
75 3nf1_A KLC 1, kinesin light ch 99.1 2.5E-10 8.5E-15 109.0 9.1 236 373-635 27-304 (311)
76 3as5_A MAMA; tetratricopeptide 99.1 6.2E-09 2.1E-13 90.4 17.1 160 439-602 11-173 (186)
77 1hz4_A MALT regulatory protein 99.0 2.1E-07 7.3E-12 91.2 28.7 199 378-601 98-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.0 1.7E-08 5.8E-13 87.6 17.1 159 472-635 9-170 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.0 1.4E-08 4.8E-13 106.8 18.4 160 436-601 9-173 (723)
80 3mv2_B Coatomer subunit epsilo 99.0 2.3E-08 7.7E-13 91.7 16.9 248 380-642 20-287 (310)
81 1hz4_A MALT regulatory protein 99.0 8E-08 2.7E-12 94.2 22.4 280 378-657 19-352 (373)
82 4i17_A Hypothetical protein; T 99.0 5E-08 1.7E-12 88.0 19.0 197 435-644 6-216 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.0 1.9E-08 6.5E-13 105.8 18.2 162 468-635 5-171 (723)
84 3q15_A PSP28, response regulat 98.9 1.1E-07 3.8E-12 93.3 22.6 165 284-500 108-290 (378)
85 3edt_B KLC 2, kinesin light ch 98.9 7.7E-09 2.6E-13 97.0 13.4 196 471-666 43-277 (283)
86 3edt_B KLC 2, kinesin light ch 98.9 1.1E-08 3.8E-13 95.8 14.0 198 436-635 43-278 (283)
87 1qqe_A Vesicular transport pro 98.9 1.3E-07 4.3E-12 89.0 20.0 195 443-640 44-272 (292)
88 1qqe_A Vesicular transport pro 98.9 6.8E-08 2.3E-12 90.8 16.9 197 451-664 32-263 (292)
89 4i17_A Hypothetical protein; T 98.8 6.9E-08 2.4E-12 87.1 15.8 150 469-624 5-168 (228)
90 2fo7_A Synthetic consensus TPR 98.8 1.6E-07 5.4E-12 76.3 14.1 123 474-599 4-129 (136)
91 2fo7_A Synthetic consensus TPR 98.8 3.4E-07 1.2E-11 74.3 15.7 127 438-567 3-132 (136)
92 3qou_A Protein YBBN; thioredox 98.7 4E-07 1.4E-11 85.1 17.8 163 468-634 114-280 (287)
93 3qky_A Outer membrane assembly 98.7 5.4E-07 1.8E-11 83.1 17.1 160 439-602 18-224 (261)
94 3qky_A Outer membrane assembly 98.7 2.2E-07 7.6E-12 85.7 13.9 188 469-660 13-251 (261)
95 2r5s_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 77.9 14.0 156 475-634 10-169 (176)
96 3urz_A Uncharacterized protein 98.7 5.5E-07 1.9E-11 79.6 14.9 181 442-649 10-198 (208)
97 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-06 6E-11 76.6 18.0 159 434-602 16-197 (212)
98 3mv2_B Coatomer subunit epsilo 98.6 4.5E-07 1.5E-11 83.1 14.1 175 125-304 85-280 (310)
99 2pzi_A Probable serine/threoni 98.6 5.6E-07 1.9E-11 95.3 16.8 181 447-636 402-603 (681)
100 3rjv_A Putative SEL1 repeat pr 98.6 1.9E-06 6.6E-11 76.3 17.0 172 453-635 3-194 (212)
101 2ifu_A Gamma-SNAP; membrane fu 98.6 6.8E-07 2.3E-11 84.6 14.4 211 417-630 3-253 (307)
102 2ifu_A Gamma-SNAP; membrane fu 98.6 1.1E-06 3.9E-11 83.1 15.8 193 386-595 29-254 (307)
103 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.8E-06 6.2E-11 76.7 16.2 123 510-635 9-147 (213)
104 3urz_A Uncharacterized protein 98.6 1E-06 3.5E-11 77.8 14.2 107 409-518 8-133 (208)
105 2pzi_A Probable serine/threoni 98.6 1.2E-06 4.2E-11 92.7 17.2 168 482-656 402-583 (681)
106 2r5s_A Uncharacterized protein 98.6 1.1E-06 3.8E-11 75.2 14.0 151 410-564 11-170 (176)
107 3qou_A Protein YBBN; thioredox 98.5 3.8E-06 1.3E-10 78.5 18.1 153 377-530 121-278 (287)
108 2uy1_A Cleavage stimulation fa 98.5 0.00011 3.8E-09 73.9 29.8 119 540-664 288-407 (493)
109 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.1E-06 1.1E-10 75.9 16.5 184 437-635 5-210 (225)
110 4ga2_A E3 SUMO-protein ligase 98.5 3.4E-07 1.2E-11 75.9 9.2 77 513-591 37-117 (150)
111 2yhc_A BAMD, UPF0169 lipoprote 98.5 6.2E-06 2.1E-10 73.8 18.0 176 406-601 5-212 (225)
112 4ga2_A E3 SUMO-protein ligase 98.5 7.3E-07 2.5E-11 73.9 10.6 140 513-656 3-149 (150)
113 2vsy_A XCC0866; transferase, g 98.5 3.1E-06 1E-10 88.1 16.8 147 418-567 2-157 (568)
114 2vsy_A XCC0866; transferase, g 98.4 2.6E-06 8.8E-11 88.7 15.3 149 449-602 2-157 (568)
115 3u3w_A Transcriptional activat 98.4 4.1E-05 1.4E-09 71.7 20.2 158 478-635 82-263 (293)
116 2uy1_A Cleavage stimulation fa 98.4 0.00037 1.3E-08 70.2 28.1 185 372-565 212-411 (493)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.5E-05 8.7E-10 69.1 17.1 121 444-572 14-153 (213)
118 2qfc_A PLCR protein; TPR, HTH, 98.3 1.5E-05 5.1E-10 74.8 16.3 161 439-599 78-263 (293)
119 1a17_A Serine/threonine protei 98.3 8.5E-06 2.9E-10 68.8 12.6 91 474-566 16-109 (166)
120 4gco_A Protein STI-1; structur 98.3 9.7E-06 3.3E-10 64.5 12.0 88 510-599 16-107 (126)
121 3u3w_A Transcriptional activat 98.3 1.8E-05 6.3E-10 74.2 15.9 156 442-597 81-261 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.3 2.1E-05 7.3E-10 73.7 16.3 163 473-635 77-263 (293)
123 4gco_A Protein STI-1; structur 98.3 7E-06 2.4E-10 65.4 11.0 105 539-647 14-121 (126)
124 3dra_A Protein farnesyltransfe 98.3 0.00032 1.1E-08 65.1 23.2 215 15-235 42-286 (306)
125 1na0_A Designed protein CTPR3; 98.2 2E-05 7E-10 62.4 13.3 90 509-599 11-103 (125)
126 3dra_A Protein farnesyltransfe 98.2 0.00062 2.1E-08 63.1 24.6 227 416-646 43-298 (306)
127 1na0_A Designed protein CTPR3; 98.2 2.3E-05 7.8E-10 62.2 13.3 113 538-653 9-123 (125)
128 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5.2E-10 68.1 13.0 114 483-600 22-142 (177)
129 3gw4_A Uncharacterized protein 98.2 7.5E-06 2.6E-10 71.9 11.1 152 447-599 3-173 (203)
130 2lni_A Stress-induced-phosphop 98.2 2.3E-05 7.7E-10 63.1 13.1 94 506-600 15-111 (133)
131 2vgx_A Chaperone SYCD; alterna 98.2 8.8E-06 3E-10 67.0 10.3 95 506-602 20-118 (148)
132 3gyz_A Chaperone protein IPGC; 98.2 1.5E-05 5.3E-10 65.5 11.6 93 506-600 35-131 (151)
133 2vyi_A SGTA protein; chaperone 98.2 1.9E-05 6.3E-10 63.3 12.0 114 508-624 13-129 (131)
134 3gw4_A Uncharacterized protein 98.2 9.8E-06 3.4E-10 71.1 11.1 150 417-566 4-175 (203)
135 1a17_A Serine/threonine protei 98.2 4.4E-05 1.5E-09 64.3 14.8 126 507-635 13-143 (166)
136 2vyi_A SGTA protein; chaperone 98.2 2.4E-05 8.3E-10 62.6 12.6 118 537-657 11-130 (131)
137 3gyz_A Chaperone protein IPGC; 98.2 1.1E-05 3.9E-10 66.3 10.3 91 474-566 39-132 (151)
138 2lni_A Stress-induced-phosphop 98.2 2.3E-05 7.8E-10 63.1 11.9 115 537-655 15-132 (133)
139 2c2l_A CHIP, carboxy terminus 98.1 4.6E-06 1.6E-10 77.6 8.2 181 413-600 12-197 (281)
140 2e2e_A Formate-dependent nitri 98.1 2.2E-05 7.6E-10 67.1 12.0 123 447-574 21-149 (177)
141 4f3v_A ESX-1 secretion system 98.1 7.1E-05 2.4E-09 67.7 15.0 136 510-647 105-247 (282)
142 2vgx_A Chaperone SYCD; alterna 98.1 6.3E-05 2.2E-09 61.8 13.0 95 537-635 20-115 (148)
143 1p5q_A FKBP52, FK506-binding p 98.1 3E-05 1E-09 74.2 12.6 86 539-628 197-283 (336)
144 3lvg_A Clathrin heavy chain 1; 98.1 7.7E-07 2.6E-11 84.2 1.4 421 73-529 52-534 (624)
145 4gcn_A Protein STI-1; structur 98.1 3.5E-05 1.2E-09 61.4 10.9 103 540-644 10-119 (127)
146 2c2l_A CHIP, carboxy terminus 98.0 7E-06 2.4E-10 76.3 7.5 188 436-635 4-196 (281)
147 3upv_A Heat shock protein STI1 98.0 4.5E-05 1.6E-09 60.7 11.3 92 541-635 7-98 (126)
148 4f3v_A ESX-1 secretion system 98.0 5.1E-05 1.7E-09 68.6 12.2 124 476-602 107-237 (282)
149 4b4t_Q 26S proteasome regulato 98.0 9.8E-05 3.3E-09 73.8 15.7 154 412-565 11-202 (434)
150 4gcn_A Protein STI-1; structur 98.0 4E-05 1.4E-09 61.1 10.3 102 508-612 9-119 (127)
151 1elw_A TPR1-domain of HOP; HOP 98.0 9.3E-05 3.2E-09 57.8 12.4 93 540-635 6-98 (118)
152 2xcb_A PCRH, regulatory protei 98.0 7.1E-05 2.4E-09 61.1 11.9 87 511-599 22-112 (142)
153 2kck_A TPR repeat; tetratricop 98.0 9.5E-05 3.2E-09 57.1 12.1 95 506-601 5-105 (112)
154 3sz7_A HSC70 cochaperone (SGT) 98.0 8.2E-05 2.8E-09 62.5 12.4 94 507-602 11-108 (164)
155 4b4t_Q 26S proteasome regulato 98.0 0.00065 2.2E-08 67.7 20.9 256 379-635 10-321 (434)
156 3q49_B STIP1 homology and U bo 98.0 0.00013 4.3E-09 59.0 12.9 94 506-600 8-104 (137)
157 3q7a_A Farnesyltransferase alp 98.0 0.002 7E-08 60.4 22.2 222 9-236 57-331 (349)
158 2xcb_A PCRH, regulatory protei 98.0 8.4E-05 2.9E-09 60.6 11.6 94 538-635 18-112 (142)
159 3sz7_A HSC70 cochaperone (SGT) 97.9 0.0001 3.5E-09 61.9 12.2 113 537-653 10-127 (164)
160 1p5q_A FKBP52, FK506-binding p 97.9 0.00014 4.7E-09 69.5 14.3 93 507-601 196-293 (336)
161 3upv_A Heat shock protein STI1 97.9 0.00011 3.6E-09 58.5 11.5 94 507-602 4-101 (126)
162 2kck_A TPR repeat; tetratricop 97.9 4.8E-05 1.6E-09 58.8 9.3 32 3-34 3-34 (112)
163 1elr_A TPR2A-domain of HOP; HO 97.9 4.5E-05 1.5E-09 61.1 9.2 106 541-647 7-118 (131)
164 2fbn_A 70 kDa peptidylprolyl i 97.9 1.6E-05 5.6E-10 69.4 6.9 120 507-629 38-176 (198)
165 1elw_A TPR1-domain of HOP; HOP 97.9 0.00017 5.9E-09 56.2 12.3 93 507-600 4-99 (118)
166 2fbn_A 70 kDa peptidylprolyl i 97.9 2.4E-05 8.1E-10 68.4 7.5 144 514-661 11-176 (198)
167 2dba_A Smooth muscle cell asso 97.9 0.00021 7.1E-09 58.6 13.0 94 538-635 28-125 (148)
168 1elr_A TPR2A-domain of HOP; HO 97.8 5.9E-05 2E-09 60.3 8.6 93 509-601 6-107 (131)
169 2dba_A Smooth muscle cell asso 97.8 0.00035 1.2E-08 57.2 13.3 95 506-602 27-128 (148)
170 3q49_B STIP1 homology and U bo 97.8 0.00023 8E-09 57.4 12.0 96 537-635 8-103 (137)
171 3q7a_A Farnesyltransferase alp 97.8 0.0084 2.9E-07 56.2 23.7 208 450-664 68-325 (349)
172 3ro3_A PINS homolog, G-protein 97.8 0.00011 3.7E-09 61.4 9.4 95 540-634 51-154 (164)
173 2xev_A YBGF; tetratricopeptide 97.8 0.00023 7.8E-09 56.7 10.8 86 546-635 10-102 (129)
174 1hxi_A PEX5, peroxisome target 97.7 0.0002 7E-09 56.3 10.1 88 544-635 23-111 (121)
175 2xev_A YBGF; tetratricopeptide 97.7 0.00055 1.9E-08 54.4 11.9 88 513-602 8-105 (129)
176 3k9i_A BH0479 protein; putativ 97.7 5.3E-05 1.8E-09 59.3 5.6 82 552-635 4-87 (117)
177 3lvg_A Clathrin heavy chain 1; 97.7 0.00016 5.5E-09 68.8 9.3 140 175-325 53-216 (624)
178 3ro3_A PINS homolog, G-protein 97.6 0.00019 6.6E-09 59.9 9.2 137 438-601 11-157 (164)
179 1wao_1 Serine/threonine protei 97.6 0.00035 1.2E-08 70.2 11.8 115 479-597 14-134 (477)
180 1hxi_A PEX5, peroxisome target 97.6 0.00042 1.5E-08 54.4 10.0 93 439-534 20-112 (121)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00049 1.7E-08 68.9 12.4 94 538-635 317-412 (457)
182 3rkv_A Putative peptidylprolyl 97.6 0.00035 1.2E-08 58.4 9.5 59 575-635 65-123 (162)
183 3k9i_A BH0479 protein; putativ 97.5 0.00027 9.2E-09 55.2 7.7 62 539-602 28-90 (117)
184 1ihg_A Cyclophilin 40; ppiase 97.5 0.00056 1.9E-08 66.1 11.1 89 538-630 273-362 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.00064 2.2E-08 68.0 11.2 120 539-662 269-406 (457)
186 3dss_A Geranylgeranyl transfer 97.4 0.034 1.2E-06 51.9 21.8 191 453-651 91-319 (331)
187 1klx_A Cysteine rich protein B 97.4 0.0032 1.1E-07 50.6 13.3 110 450-568 9-127 (138)
188 1wao_1 Serine/threonine protei 97.4 0.00038 1.3E-08 70.0 9.0 118 443-563 13-135 (477)
189 2l6j_A TPR repeat-containing p 97.4 0.00016 5.6E-09 55.7 4.8 94 538-635 4-104 (111)
190 2hr2_A Hypothetical protein; a 97.4 0.00096 3.3E-08 54.2 9.1 62 540-601 59-130 (159)
191 1ihg_A Cyclophilin 40; ppiase 97.3 0.00077 2.6E-08 65.1 10.1 121 541-663 226-363 (370)
192 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00056 1.9E-08 65.3 8.8 144 471-635 179-325 (338)
193 3rkv_A Putative peptidylprolyl 97.3 0.0027 9.2E-08 52.9 11.8 59 508-566 64-125 (162)
194 2l6j_A TPR repeat-containing p 97.3 0.00093 3.2E-08 51.3 7.8 91 572-664 3-101 (111)
195 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0012 4E-08 63.1 9.9 140 439-600 182-326 (338)
196 3ma5_A Tetratricopeptide repea 97.2 0.0012 4E-08 49.7 7.5 61 538-600 7-68 (100)
197 1klx_A Cysteine rich protein B 97.1 0.0032 1.1E-07 50.7 10.2 110 484-602 8-126 (138)
198 3dss_A Geranylgeranyl transfer 97.1 0.043 1.5E-06 51.2 18.6 191 447-645 40-274 (331)
199 2hr2_A Hypothetical protein; a 97.1 0.0053 1.8E-07 49.8 10.6 59 439-499 14-85 (159)
200 1na3_A Designed protein CTPR2; 97.1 0.0044 1.5E-07 45.2 9.6 79 540-621 11-89 (91)
201 3n71_A Histone lysine methyltr 97.1 0.0027 9.1E-08 63.4 10.7 120 482-601 320-463 (490)
202 3n71_A Histone lysine methyltr 97.1 0.001 3.5E-08 66.4 7.6 121 515-635 317-461 (490)
203 2kat_A Uncharacterized protein 97.0 0.0013 4.3E-08 51.1 6.5 59 539-599 20-79 (115)
204 2kat_A Uncharacterized protein 96.9 0.0036 1.2E-07 48.4 8.2 97 555-655 2-103 (115)
205 3ma5_A Tetratricopeptide repea 96.8 0.0037 1.3E-07 46.8 7.3 85 572-658 6-94 (100)
206 1dce_A Protein (RAB geranylger 96.8 0.046 1.6E-06 55.9 17.2 168 451-626 44-243 (567)
207 1zu2_A Mitochondrial import re 96.6 0.0033 1.1E-07 50.9 6.2 93 486-582 17-133 (158)
208 1na3_A Designed protein CTPR2; 96.6 0.028 9.4E-07 40.7 10.6 79 438-519 11-89 (91)
209 3ly7_A Transcriptional activat 96.5 0.1 3.6E-06 48.9 16.3 45 434-480 192-242 (372)
210 1dce_A Protein (RAB geranylger 96.4 0.075 2.6E-06 54.4 15.9 169 485-658 43-243 (567)
211 3mkq_A Coatomer beta'-subunit; 96.3 0.18 6.3E-06 54.6 19.4 77 475-566 633-709 (814)
212 1zu2_A Mitochondrial import re 96.2 0.0041 1.4E-07 50.3 4.4 95 518-617 13-132 (158)
213 3mkq_A Coatomer beta'-subunit; 96.1 0.3 1E-05 52.9 19.8 129 377-532 633-761 (814)
214 3ly7_A Transcriptional activat 96.0 0.099 3.4E-06 49.0 13.1 129 467-599 190-336 (372)
215 3qww_A SET and MYND domain-con 95.9 0.021 7.1E-07 55.9 8.7 86 550-635 310-408 (433)
216 1wy6_A Hypothetical protein ST 95.8 0.46 1.6E-05 36.5 14.6 65 539-605 92-156 (172)
217 2kc7_A BFR218_protein; tetratr 95.7 0.039 1.3E-06 40.9 7.7 56 545-602 7-64 (99)
218 3qwp_A SET and MYND domain-con 95.6 0.037 1.3E-06 54.2 9.0 91 545-635 294-397 (429)
219 3mkq_B Coatomer subunit alpha; 95.5 0.37 1.3E-05 39.6 12.8 129 479-636 13-142 (177)
220 1wy6_A Hypothetical protein ST 95.4 0.53 1.8E-05 36.2 12.3 137 117-274 18-157 (172)
221 3qww_A SET and MYND domain-con 95.3 0.029 9.9E-07 54.9 7.2 60 540-599 342-408 (433)
222 3qwp_A SET and MYND domain-con 95.2 0.043 1.5E-06 53.8 7.9 87 515-601 295-399 (429)
223 3mkq_B Coatomer subunit alpha; 94.9 1.2 3.9E-05 36.7 14.2 99 418-534 18-116 (177)
224 1pc2_A Mitochondria fission pr 94.9 0.12 4.1E-06 41.3 8.1 84 555-641 15-104 (152)
225 2wpv_A GET4, UPF0363 protein Y 94.6 2.7 9.2E-05 38.5 21.9 186 379-602 19-217 (312)
226 3bee_A Putative YFRE protein; 94.3 0.3 1E-05 35.5 8.6 44 554-599 25-69 (93)
227 2wpv_A GET4, UPF0363 protein Y 94.2 3.3 0.00011 37.9 17.3 166 79-270 37-216 (312)
228 2kc7_A BFR218_protein; tetratr 94.0 0.48 1.6E-05 34.6 9.7 59 442-501 6-65 (99)
229 3bee_A Putative YFRE protein; 93.9 0.23 8E-06 36.1 7.4 73 570-645 3-79 (93)
230 3lpz_A GET4 (YOR164C homolog); 93.6 4.4 0.00015 37.3 20.0 166 79-270 39-215 (336)
231 3u64_A Protein TP_0956; tetrat 93.4 0.7 2.4E-05 41.5 10.8 83 488-570 180-272 (301)
232 2v5f_A Prolyl 4-hydroxylase su 93.2 0.54 1.8E-05 35.0 8.7 60 541-600 8-73 (104)
233 2v5f_A Prolyl 4-hydroxylase su 93.2 0.3 1E-05 36.4 7.3 70 572-641 4-79 (104)
234 1pc2_A Mitochondria fission pr 93.1 0.49 1.7E-05 37.8 8.4 81 453-534 15-98 (152)
235 3lpz_A GET4 (YOR164C homolog); 92.5 6.5 0.00022 36.2 25.8 129 380-531 19-160 (336)
236 4ady_A RPN2, 26S proteasome re 92.1 15 0.0005 39.5 34.9 127 444-576 532-664 (963)
237 1nzn_A CGI-135 protein, fissio 90.9 1.1 3.9E-05 34.3 7.8 84 553-639 16-105 (126)
238 3u64_A Protein TP_0956; tetrat 90.9 1.5 5.2E-05 39.4 9.8 80 452-534 179-267 (301)
239 1qsa_A Protein (soluble lytic 90.6 17 0.00057 37.3 34.2 450 16-572 16-484 (618)
240 3ffl_A Anaphase-promoting comp 89.9 1.8 6.2E-05 34.9 8.5 28 610-637 123-150 (167)
241 2uwj_G Type III export protein 89.8 3.2 0.00011 29.8 8.5 86 54-145 21-106 (115)
242 2p58_C Putative type III secre 88.8 3.4 0.00012 29.7 8.1 85 54-144 22-106 (116)
243 4b4t_P 26S proteasome regulato 88.8 13 0.00045 36.4 15.7 95 541-635 140-244 (445)
244 4gns_B Protein CSD3, chitin bi 88.5 2.3 7.9E-05 44.4 10.5 53 545-599 344-397 (754)
245 1nzn_A CGI-135 protein, fissio 88.1 2.6 8.8E-05 32.3 7.9 27 544-572 80-106 (126)
246 4h7y_A Dual specificity protei 87.3 9.5 0.00032 30.2 11.6 64 449-515 73-136 (161)
247 1v54_E Cytochrome C oxidase po 87.0 4.5 0.00015 29.2 7.9 63 554-618 26-88 (109)
248 2ff4_A Probable regulatory pro 86.8 3.7 0.00013 39.4 10.3 72 542-614 175-250 (388)
249 4b4t_P 26S proteasome regulato 86.4 18 0.0006 35.4 15.0 162 145-306 141-324 (445)
250 4h7y_A Dual specificity protei 86.1 9.7 0.00033 30.1 10.1 57 221-278 74-130 (161)
251 4fhn_B Nucleoporin NUP120; pro 85.8 7.6 0.00026 43.6 13.6 162 79-258 816-987 (1139)
252 1v54_E Cytochrome C oxidase po 84.6 7.4 0.00025 28.2 8.0 63 121-184 25-87 (109)
253 3ltj_A Alpharep-4; protein eng 84.4 17 0.0006 30.5 15.8 81 72-156 25-105 (201)
254 4gns_B Protein CSD3, chitin bi 84.3 8.8 0.0003 40.2 12.2 55 580-636 344-398 (754)
255 3ltm_A Alpha-REP4; protein eng 83.3 20 0.00069 30.4 16.0 49 73-121 31-79 (211)
256 2y69_E Cytochrome C oxidase su 81.7 9.5 0.00033 29.3 8.1 61 556-618 71-131 (152)
257 1wdy_A 2-5A-dependent ribonucl 81.4 15 0.00052 32.9 11.9 210 80-301 7-240 (285)
258 2uwj_G Type III export protein 81.4 13 0.00043 26.8 9.3 78 156-237 21-98 (115)
259 2p58_C Putative type III secre 80.8 13 0.00046 26.7 8.7 78 156-237 22-99 (116)
260 3ffl_A Anaphase-promoting comp 80.0 7.1 0.00024 31.5 7.5 66 2-67 16-91 (167)
261 4ady_A RPN2, 26S proteasome re 79.6 72 0.0025 34.4 35.2 263 381-651 382-671 (963)
262 2ff4_A Probable regulatory pro 79.0 3.8 0.00013 39.4 6.9 70 576-647 174-251 (388)
263 3o48_A Mitochondria fission 1 78.3 18 0.00062 27.9 8.9 71 570-641 37-111 (134)
264 4fhn_B Nucleoporin NUP120; pro 78.3 40 0.0014 37.8 15.8 142 477-627 818-989 (1139)
265 1y8m_A FIS1; mitochondria, unk 78.1 18 0.00062 28.3 8.9 63 537-599 38-103 (144)
266 3o48_A Mitochondria fission 1 76.4 11 0.00038 29.1 7.2 69 536-609 38-111 (134)
267 3ltm_A Alpha-REP4; protein eng 76.0 35 0.0012 28.9 17.7 89 506-599 94-182 (211)
268 1wdy_A 2-5A-dependent ribonucl 75.9 43 0.0015 29.8 14.4 58 283-341 151-213 (285)
269 2y69_E Cytochrome C oxidase su 75.3 19 0.00065 27.7 8.0 63 121-184 68-130 (152)
270 1y8m_A FIS1; mitochondria, unk 74.6 29 0.00098 27.2 10.0 76 568-644 34-113 (144)
271 2qx5_A Nucleoporin NIC96; mRNA 74.5 83 0.0028 32.4 17.8 24 439-462 356-382 (661)
272 3eiq_C Programmed cell death p 72.7 50 0.0017 30.9 12.2 65 439-504 220-286 (358)
273 3kea_A K1L; tropism, ANK repea 72.4 14 0.00047 33.5 8.6 44 282-325 131-175 (285)
274 3esl_A Checkpoint serine/threo 70.1 48 0.0016 27.8 10.6 58 551-609 92-150 (202)
275 1n11_A Ankyrin; clathrin, BAND 70.0 81 0.0028 30.4 15.0 115 80-202 16-136 (437)
276 4b4t_R RPN7, 26S proteasome re 69.6 15 0.00051 35.8 8.5 63 438-500 133-197 (429)
277 1zbp_A Hypothetical protein VP 68.9 7 0.00024 34.5 5.2 114 545-665 4-124 (273)
278 4b4t_R RPN7, 26S proteasome re 68.6 16 0.00053 35.6 8.4 98 507-604 131-239 (429)
279 1zbp_A Hypothetical protein VP 68.6 23 0.00079 31.3 8.4 108 515-635 5-126 (273)
280 1ug3_A EIF4GI, eukaryotic prot 67.0 80 0.0027 29.4 12.6 26 281-306 15-40 (339)
281 3eu9_A Huntingtin-interacting 66.4 54 0.0018 28.1 11.1 17 185-201 48-64 (240)
282 4g8k_A 2-5A-dependent ribonucl 63.4 65 0.0022 29.7 11.6 105 261-372 218-328 (337)
283 1k1a_A B-cell lymphoma 3-encod 63.1 58 0.002 28.0 10.6 27 114-140 14-40 (241)
284 3ltj_A Alpharep-4; protein eng 61.9 69 0.0023 26.7 19.2 153 175-335 27-179 (201)
285 3esl_A Checkpoint serine/threo 61.7 48 0.0016 27.8 8.6 61 485-545 93-153 (202)
286 3txn_A 26S proteasome regulato 58.7 1.3E+02 0.0043 28.7 25.5 27 279-305 21-47 (394)
287 3kea_A K1L; tropism, ANK repea 58.4 64 0.0022 29.0 10.2 19 284-302 199-217 (285)
288 4b4t_S RPN3, 26S proteasome re 57.5 63 0.0022 31.9 10.1 21 13-33 143-163 (523)
289 3hra_A Ankyrin repeat family p 56.7 65 0.0022 26.7 9.4 150 186-343 12-174 (201)
290 3jxi_A Vanilloid receptor-rela 56.2 12 0.00043 33.1 4.9 55 114-168 10-73 (260)
291 3eu9_A Huntingtin-interacting 55.1 81 0.0028 26.9 10.2 14 482-495 218-231 (240)
292 3b7b_A Euchromatic histone-lys 54.1 75 0.0026 27.2 9.7 21 479-499 215-235 (237)
293 4a1g_A Mitotic checkpoint seri 53.4 72 0.0025 25.3 8.1 9 492-500 86-94 (152)
294 3t8k_A Uncharacterized protein 53.3 57 0.0019 27.0 8.2 56 86-141 14-70 (186)
295 2zu6_B Programmed cell death p 52.1 1.4E+02 0.0048 27.2 13.7 66 281-346 170-241 (307)
296 1oyz_A Hypothetical protein YI 50.9 1.3E+02 0.0045 26.6 19.8 109 506-624 141-250 (280)
297 3txn_A 26S proteasome regulato 50.0 1.8E+02 0.006 27.7 20.1 27 373-399 19-45 (394)
298 3jxi_A Vanilloid receptor-rela 47.6 46 0.0016 29.2 7.3 26 216-241 11-36 (260)
299 4b4t_S RPN3, 26S proteasome re 47.4 1.8E+02 0.006 28.8 11.4 120 507-635 231-367 (523)
300 2d2s_A Exocyst complex compone 46.9 65 0.0022 28.0 7.6 84 513-599 24-117 (235)
301 4a1g_A Mitotic checkpoint seri 46.6 1.1E+02 0.0037 24.3 9.9 54 555-609 82-136 (152)
302 2ion_A PDCD4, programmed cell 46.6 1.1E+02 0.0037 24.4 8.2 64 509-572 11-79 (152)
303 2d2s_A Exocyst complex compone 45.9 76 0.0026 27.6 7.9 21 113-133 25-45 (235)
304 1oyz_A Hypothetical protein YI 45.7 1.6E+02 0.0055 26.0 20.3 47 74-120 36-82 (280)
305 3ljn_A Hypothetical protein; a 42.3 2.1E+02 0.0073 26.5 12.0 13 483-495 253-265 (364)
306 2fu4_A Ferric uptake regulatio 41.1 84 0.0029 21.5 6.6 62 130-192 6-68 (83)
307 2wvi_A Mitotic checkpoint seri 40.8 1.4E+02 0.0049 24.0 10.2 55 555-610 77-132 (164)
308 3hra_A Ankyrin repeat family p 40.5 85 0.0029 25.9 7.5 54 82-140 9-66 (201)
309 3bu8_A Telomeric repeat-bindin 40.2 65 0.0022 27.1 6.0 68 554-624 88-162 (235)
310 2nsz_A Programmed cell death p 39.7 1.3E+02 0.0043 23.1 9.3 64 281-344 11-80 (129)
311 2ion_A PDCD4, programmed cell 39.7 1.4E+02 0.0048 23.7 9.3 64 281-344 13-82 (152)
312 1n11_A Ankyrin; clathrin, BAND 39.5 2.6E+02 0.0089 26.7 16.0 54 515-573 316-372 (437)
313 3eiq_C Programmed cell death p 39.5 2.4E+02 0.0083 26.3 17.0 70 281-350 221-296 (358)
314 4aez_C MAD3, mitotic spindle c 39.4 1.8E+02 0.0062 24.8 9.0 53 555-608 131-184 (223)
315 2nsz_A Programmed cell death p 38.9 1.3E+02 0.0044 23.0 9.6 64 509-572 9-77 (129)
316 1bpo_A Protein (clathrin); cla 38.7 2.3E+02 0.0078 27.5 10.3 47 386-432 342-388 (494)
317 1wty_A Hypothetical protein TT 38.1 95 0.0032 23.3 6.5 68 554-627 4-71 (119)
318 4g8k_A 2-5A-dependent ribonucl 37.9 2.4E+02 0.0081 25.8 16.7 15 382-396 245-259 (337)
319 3utm_A Tankyrase-1; tankyrase, 36.0 2.5E+02 0.0086 25.5 12.7 75 358-433 227-305 (351)
320 1k1a_A B-cell lymphoma 3-encod 35.7 2E+02 0.007 24.3 11.9 85 214-302 13-101 (241)
321 2qx5_A Nucleoporin NIC96; mRNA 35.6 3.9E+02 0.013 27.6 14.0 26 8-34 155-180 (661)
322 3ljn_A Hypothetical protein; a 35.2 2.7E+02 0.0094 25.7 11.4 207 380-598 24-266 (364)
323 2pnn_A Transient receptor pote 34.7 1.1E+02 0.0037 27.0 7.7 18 186-203 108-125 (273)
324 2wvi_A Mitotic checkpoint seri 34.2 93 0.0032 25.1 6.0 21 481-501 106-126 (164)
325 3kae_A CDC27, possible protein 33.8 1.9E+02 0.0065 23.5 8.7 78 519-598 45-139 (242)
326 3aji_A 26S proteasome non-ATPa 32.9 2.2E+02 0.0076 23.9 10.2 20 183-202 10-29 (231)
327 1qsa_A Protein (soluble lytic 32.7 4.2E+02 0.014 27.1 35.7 325 281-635 76-439 (618)
328 2etb_A Transient receptor pote 32.7 96 0.0033 27.0 6.9 55 113-168 6-70 (256)
329 2fu4_A Ferric uptake regulatio 31.8 1.2E+02 0.0042 20.6 6.7 62 231-293 6-68 (83)
330 3b7b_A Euchromatic histone-lys 31.1 1.9E+02 0.0067 24.4 8.6 25 13-41 15-39 (237)
331 2etb_A Transient receptor pote 30.3 1.2E+02 0.0041 26.3 7.1 23 216-238 8-30 (256)
332 2rfa_A Transient receptor pote 30.0 65 0.0022 27.5 5.1 150 11-173 5-183 (232)
333 1bpo_A Protein (clathrin); cla 29.3 4E+02 0.014 25.9 10.7 117 280-402 364-485 (494)
334 2fe3_A Peroxide operon regulat 29.3 96 0.0033 24.3 5.5 63 130-193 11-73 (145)
335 2rfa_A Transient receptor pote 29.0 1.1E+02 0.0036 26.1 6.4 28 248-275 157-184 (232)
336 2zu6_B Programmed cell death p 28.1 3.4E+02 0.012 24.6 14.1 27 281-307 7-33 (307)
337 3ygs_P Procaspase 9; apoptosis 28.1 50 0.0017 23.8 3.3 38 89-126 51-88 (97)
338 4aez_C MAD3, mitotic spindle c 27.5 2.9E+02 0.0099 23.6 8.2 53 122-174 130-183 (223)
339 2pnn_A Transient receptor pote 27.0 1.9E+02 0.0064 25.4 7.8 17 218-234 21-37 (273)
340 1mzb_A Ferric uptake regulatio 26.5 1.8E+02 0.006 22.4 6.5 62 131-193 8-70 (136)
341 3bu8_A Telomeric repeat-bindin 26.2 2E+02 0.007 24.3 6.7 45 523-567 88-143 (235)
342 2w57_A Ferric uptake regulatio 26.2 1.8E+02 0.0063 22.9 6.6 63 130-193 6-69 (150)
343 3ygs_P Procaspase 9; apoptosis 23.8 1.4E+02 0.0049 21.3 5.0 41 291-331 51-91 (97)
344 2p1h_A APAF-1, apoptotic prote 23.7 1.8E+02 0.0062 20.5 5.6 61 58-123 24-84 (94)
345 2r9g_A AAA ATPase, central reg 23.3 3.3E+02 0.011 22.8 9.5 61 440-501 15-83 (204)
346 3mv2_A Coatomer subunit alpha; 23.0 4.4E+02 0.015 24.1 13.6 119 17-170 125-256 (325)
347 4gq2_M Nucleoporin NUP120; bet 23.0 4.6E+02 0.016 28.6 11.0 52 81-133 816-867 (950)
348 2fe3_A Peroxide operon regulat 22.7 1.7E+02 0.0057 22.9 5.7 33 259-291 38-70 (145)
349 3e3v_A Regulatory protein RECX 22.7 3.1E+02 0.011 22.3 7.6 30 611-640 138-168 (177)
350 2xig_A Ferric uptake regulatio 22.3 1.4E+02 0.0048 23.6 5.2 64 130-194 16-79 (150)
351 4ets_A Ferric uptake regulatio 22.1 1.1E+02 0.0038 24.6 4.6 71 123-194 14-87 (162)
352 1oai_A Nuclear RNA export fact 21.7 53 0.0018 21.0 2.0 23 54-76 35-57 (59)
353 2f8y_A Notch homolog 1, transl 21.7 3.5E+02 0.012 22.5 10.9 14 148-161 29-42 (223)
354 2o03_A Probable zinc uptake re 21.3 1.3E+02 0.0045 23.0 4.8 33 159-191 28-60 (131)
355 2p1h_A APAF-1, apoptotic prote 21.3 2E+02 0.0069 20.2 5.4 34 190-223 50-83 (94)
356 3qye_A TBC1 domain family memb 21.0 4.8E+02 0.016 23.8 9.8 105 228-332 209-318 (331)
357 2w57_A Ferric uptake regulatio 20.7 3E+02 0.01 21.6 6.9 63 231-294 6-69 (150)
358 1bd8_A P19INK4D CDK4/6 inhibit 20.4 90 0.0031 24.4 3.9 152 145-303 3-156 (156)
359 3eyy_A Putative iron uptake re 20.4 1.5E+02 0.0051 23.2 5.0 61 131-193 9-69 (145)
360 4hbd_A KN motif and ankyrin re 20.2 3.5E+02 0.012 23.8 8.2 57 284-340 115-176 (276)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-38 Score=332.08 Aligned_cols=494 Identities=9% Similarity=-0.059 Sum_probs=366.0
Q ss_pred hhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHH
Q 005969 85 YGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIH 164 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 164 (667)
+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+ ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888888888888999999999999999999999999999985 4588899999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC-------------------CchhHHHHHHHHHccCChhH
Q 005969 165 GLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR-------------------DVVSWNTIIGALAESENFGK 225 (667)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 225 (667)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678899999999999999999999999965433 37799999999999999999
Q ss_pred HHHHHHHhHhCCcCCCh-hhHHHHHHHhhccCChhHH--HHH-HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHh
Q 005969 226 ALELYLRMSVDIVFPNQ-TTFVYVINSCAGLQNSILG--KSI-HAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFS 301 (667)
Q Consensus 226 a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 301 (667)
|+++|++|.+. .|+. ..+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999875 3543 3444444444333322221 111 4455555555566778888899999999999999999
Q ss_pred ccCC--CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHH
Q 005969 302 EISN--KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGS 378 (667)
Q Consensus 302 ~~~~--~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (667)
++.+ ++..+|+.++..|.+.|+.+ |..+|.++.+.+.. +..++ ..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-------------------------------~~ 344 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVY-------------------------------PL 344 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTH-------------------------------HH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHH-------------------------------HH
Confidence 9987 78888888888888888888 88888888765422 33333 36
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHH
Q 005969 379 LMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
++..+.+.|++++|.++++.+ . .....+..+|+.++..|.+.|++++|.++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~----------------------------~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDL----------------------------V-DRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----------------------------H-HHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----------------------------H-hhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 677777888888888765543 1 11234566777777888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---
Q 005969 459 FKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--- 535 (667)
Q Consensus 459 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 535 (667)
|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+.+ |.+..++..++.+|.+.|++++|.++|+++.+
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88877642 3356678888888888888888888888877664 44677888888888888888888888887762
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 536 RNVITWTALISALGLNGFAQRALEKFREMEFL----GFKPD--RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 536 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+. + +.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~ 550 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-S-TNDA 550 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-SCCH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCCh
Confidence 46778888888888888888888888888775 66777 568888888888888888888888888554 2 4467
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005969 610 DHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEG 650 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~ 650 (667)
.+|..+..+|.+.|++++|.+.++++. ..| +...+..+...
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 788888888888888888888888873 444 34555544443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-36 Score=319.87 Aligned_cols=470 Identities=7% Similarity=-0.040 Sum_probs=384.3
Q ss_pred HhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHH
Q 005969 187 FQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHA 266 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 266 (667)
.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4456667777778888778888999999999999999999999999984 56888899999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCC-------------------CcccHHHHHHHHhcCCChH-H
Q 005969 267 KVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNK-------------------NIVSWNALILGYASKSSPT-S 326 (667)
Q Consensus 267 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~-a 326 (667)
.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+.+ |
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 87543 668889999999999999999999999965443 3678999999999999999 9
Q ss_pred HHHHHHHHHcCCCCCHh-hHHHHHHHhhhhhhh--HH-----HHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHh
Q 005969 327 IFLLIELLQLGYRPNEF-TFSHVLRSSLAFQLL--QL-----HCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTA 398 (667)
Q Consensus 327 ~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 398 (667)
...|++|.+.+ |+.. .+..+.......+.. .. +..+...+..+...+++.++..|.+.|++++|.++|+.
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999998864 4333 232222222111111 11 23334445556666777888999999999999999999
Q ss_pred c-CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 005969 399 L-NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF 474 (667)
Q Consensus 399 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 474 (667)
+ ..+++...+..++.++.+.|++++|.++|+++. ..+..++..++.++.+.|++++|..+++++.+.. +.+..++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 8 557888999999999999999999999999886 3577889999999999999999999999998653 5678899
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhC
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLN 551 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 551 (667)
..++..|.+.|++++|.++|+.+.+.. |.+..+|+.++..|.+.|++++|.++|+++. ..+..+|..++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 999999999999999999999998864 5478899999999999999999999999876 34778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCCCC--cchhHHHHHHHhhcCChH
Q 005969 552 GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY---GVEPE--MDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~ 626 (667)
|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++++++.+.. +..|+ ..+|..++.+|.+.|+++
T Consensus 455 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999863 4468899999999999999999999999995542 66777 679999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 627 EAEKIITTMP--FPPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 627 ~A~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
+|.++++++. .+.+..+|..+..+|.+.|+++.|....++
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999983 344799999999999999999999887764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5e-28 Score=243.65 Aligned_cols=184 Identities=14% Similarity=0.176 Sum_probs=174.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---------hhhHHHHHHHHHHhCCCCCch
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN---------LALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 507 (667)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|..| |.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence 46888999999999999999999999999999999999999999987654 678999999999999776 99
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT----DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
.+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999997 5899999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 584 RHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
++.|++++|.+++++| ++.|..|+..||+.++..|.+.
T Consensus 186 ~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999 5669999999999999998764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.3e-28 Score=243.51 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccC---------chHHHHHHHHHHHHhcCCCchH
Q 005969 107 VTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQ---------DLEFGEQIHGLVIKNGFDYELL 177 (667)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 177 (667)
..++.+|.+|++.|++++|+++|++|.+.|++||..+|+.||.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCC----CCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhh
Q 005969 178 VANSLVNMYFQCAGIWSAEKMFKDVE----IRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCA 253 (667)
Q Consensus 178 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 253 (667)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998886 57999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 005969 254 GLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKC 290 (667)
Q Consensus 254 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (667)
+.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1e-22 Score=202.57 Aligned_cols=371 Identities=13% Similarity=0.086 Sum_probs=227.5
Q ss_pred HHHHccCChhHHHHHHHHhHhCCcCCChh-hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 215 GALAESENFGKALELYLRMSVDIVFPNQT-TFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
..+.+.|++++|.+.+.++... .|+.. .+..+...+...|+.++|...++...+.. +.+...+..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445556666666666555443 33332 23333333555566666666665555543 23455566666666666666
Q ss_pred HHHHHHHhccCC--C-CcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcC
Q 005969 294 EGAHLCFSEISN--K-NIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGY 369 (667)
Q Consensus 294 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 369 (667)
++|.+.|+++.. | +...|..+...+...|+.+ |...+.++.+. .|+.....
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~----------------------- 138 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVR----------------------- 138 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHH-----------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH-----------------------
Confidence 666666665532 2 2234555555555555555 55555554442 22222111
Q ss_pred cchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHc
Q 005969 370 ENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHN 449 (667)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 449 (667)
..+...+...|++++|.+.|+++ ++ ....+..+|..+...+...
T Consensus 139 -------~~l~~~~~~~g~~~~A~~~~~~a----------------------------l~-~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 139 -------SDLGNLLKALGRLEEAKACYLKA----------------------------IE-TQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp -------HHHHHHHHTTSCHHHHHHHHHHH----------------------------HH-HCTTCHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHccCHHHHHHHHHHH----------------------------HH-hCCCCHHHHHHHHHHHHHc
Confidence 23444555556666666544432 00 0112345666777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. |.+..++..+...|...|++++|...
T Consensus 183 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777643 2345567777777777777888877777777664 43567777777778888888888877
Q ss_pred HHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 530 FNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 530 ~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
|+++. .| +..+|..+...+.+.|++++|++.++++.+. .+.+..++..+...+.+.|++++|...++++.+. .+
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 336 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FP 336 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CT
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 77765 23 4557777777888888888888888887775 2445667777888888888888888888877432 34
Q ss_pred CCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005969 607 PEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP-NALIWRTFLEGCQRCR 655 (667)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~ 655 (667)
.+..++..+..++.+.|++++|.+.++++ ...| +...|..+...+...|
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 44567777888888888888888888776 3444 3566666666555544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=2e-22 Score=200.55 Aligned_cols=343 Identities=11% Similarity=0.053 Sum_probs=261.6
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChHHH
Q 005969 251 SCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPTSI 327 (667)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~a~ 327 (667)
.+.+.|++++|.+.+..+.+..+. +...+..+...+...|++++|...++...+ .+...|..+.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg------------ 74 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG------------ 74 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH------------
Confidence 345567777777777776665322 344555566666677777777766655432 2233444444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCc
Q 005969 328 FLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAV 405 (667)
Q Consensus 328 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~ 405 (667)
..+.+.|++++|.+.|+++ ..|.+.
T Consensus 75 -----------------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 75 -----------------------------------------------------NVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp -----------------------------------------------------HHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred -----------------------------------------------------HHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 4445555555555555544 223333
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCC--CCC-cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLE--RPD-IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS 482 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 482 (667)
..+..+..++...|++++|.+.|+++. .|+ ...+..+...+...|++++|...|+++.+.. +-+..++..+...+.
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345555555555566666655666554 244 3456677788888999999999999998853 335778999999999
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALE 559 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~ 559 (667)
+.|+++.|...++++.+.+ |.+...+..+...+...|++++|...+++.. .| +..++..+...+...|++++|++
T Consensus 181 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999875 5578899999999999999999999999876 34 56789999999999999999999
Q ss_pred HHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-C
Q 005969 560 KFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-F 637 (667)
Q Consensus 560 ~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~ 637 (667)
.|+++.+. .| +..+|..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++. .
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999985 55 4678999999999999999999999999655 56677899999999999999999999999984 4
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 638 PP-NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 638 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.| +..++..+...+.+.|+.+.|....++
T Consensus 335 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44 588999999999999999999887654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.5e-20 Score=189.61 Aligned_cols=442 Identities=10% Similarity=-0.033 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 005969 107 VTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMY 186 (667)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (667)
..|......+.+.|++++|++.|+++.+.+ |+...+..+..++...|++++|...++.+.+.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 355666777788888888888888887754 677777777777878888888888887777664 22344555555555
Q ss_pred HhcCChhHHHHhhccCCC---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHH
Q 005969 187 FQCAGIWSAEKMFKDVEI---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKS 263 (667)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 263 (667)
.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------ 151 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER------------ 151 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH------------
Confidence 555555555544444321 12222222222222222222222222222222211221111110000
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCC-cccHHHHHHHHh---cCCChH-HHHHHHHHHH---
Q 005969 264 IHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKN-IVSWNALILGYA---SKSSPT-SIFLLIELLQ--- 335 (667)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~---~~~~~~-a~~~~~~m~~--- 335 (667)
.......|+..... .+.......... ..+..|+ ...+......+. +.|+++ |...+.++.+
T Consensus 152 ----~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 152 ----KDKQENLPSVTSMA----SFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ---------CCCCHHHHH----HHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ----HhhccCCchhHHHH----HHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 00000111111111 111100000000 0011111 222333333333 378888 8888888776
Q ss_pred --cCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHH
Q 005969 336 --LGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIA 412 (667)
Q Consensus 336 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~ 412 (667)
....|+..... +.+..++..+...+...|++++|...++.. ...|+...+..+.
T Consensus 221 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~ 277 (514)
T 2gw1_A 221 EQLDKNNEDEKLK-----------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMA 277 (514)
T ss_dssp HHTTTSTTCHHHH-----------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred hhhccCccccccC-----------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHH
Confidence 32233322110 112334457788889999999999988876 2222255566667
Q ss_pred HHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 413 GIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
.++...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|+++.
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766543 344566666677777777777777777776643 2244566666666777777777
Q ss_pred HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C---C----hhhHHHHHHHHHh---CCChHHH
Q 005969 490 GSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R---N----VITWTALISALGL---NGFAQRA 557 (667)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~---~~~~~~A 557 (667)
|...++.+.+.. |.+...+..+...|...|++++|...++.+.+ | + ...+..+...+.. .|++++|
T Consensus 357 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 357 CETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 777777766653 33556666666777777777777776666542 1 1 2256666666666 6677777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 558 LEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
.+.++++.+.. +.+..++..+...|.+.|++++|...+++..+
T Consensus 435 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 435 TNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77777666642 22355666666666677777777777766643
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.3e-20 Score=191.45 Aligned_cols=430 Identities=8% Similarity=-0.038 Sum_probs=276.7
Q ss_pred hhHHhhHHHHhhccCChhHHHHhhccCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 75 AFVGTALLGLYGRHGCLDEVVSVFEDMPR--KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
...+..+...+.+.|++++|+..|+++.. |+...|..+..++...|++++|++.++++.+.+ +.+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45667788899999999999999999863 888899999999999999999999999998865 345678999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC----CCchhHHHHHHHHHccCChhHHHH
Q 005969 153 NEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI----RDVVSWNTIIGALAESENFGKALE 228 (667)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~ 228 (667)
..|++++|...++.+.+.+. ++......++..+........+.+.+..+.. ++...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998763 4445555556555555555555554443331 222222221111222222222222
Q ss_pred HHHHhHhCCcCC--------C-hhhHHHHHHHhh---ccCChhHHHHHHHHHHH-----hcCCC--------CchHHHHH
Q 005969 229 LYLRMSVDIVFP--------N-QTTFVYVINSCA---GLQNSILGKSIHAKVIK-----NALEC--------DVFVGSAL 283 (667)
Q Consensus 229 ~~~~m~~~g~~p--------~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~~--------~~~~~~~l 283 (667)
+...+......+ + ...+......+. +.|++++|...++.+.+ ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221111 1 222222222222 36777777777777766 21111 23344555
Q ss_pred HHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHH
Q 005969 284 VDFYAKCDNLEGAHLCFSEISN--KNIVSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLH 361 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (667)
...+...|++++|...|++..+ |+...+.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~------------------------------------------------- 274 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYI------------------------------------------------- 274 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHH-------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHH-------------------------------------------------
Confidence 5555666666666655554432 2222333
Q ss_pred HHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CCCc
Q 005969 362 CLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RPDI 436 (667)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~ 436 (667)
.+...+...|++++|.+.++.. ..|.+...+..+..++...|++++|...+++.. ..+.
T Consensus 275 ----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 338 (514)
T 2gw1_A 275 ----------------YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338 (514)
T ss_dssp ----------------HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS
T ss_pred ----------------HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH
Confidence 4444555555555555555554 233344455555556666666666666666543 2345
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNM 512 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 512 (667)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++.+.+.....++ ...+..
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 677778888888889999999998887753 335667888888888899999999999888776432222 338888
Q ss_pred HHHHHHh---cCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 005969 513 LIDMYGK---CGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 513 l~~~~~~---~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 574 (667)
+...+.. .|++++|...++.+. .| +..++..+...|...|++++|.+.|++..+. .|+..
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 8899999 899999999998876 23 5667888999999999999999999999885 56544
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=5e-19 Score=184.48 Aligned_cols=431 Identities=11% Similarity=-0.012 Sum_probs=275.4
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 005969 106 LVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNM 185 (667)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 185 (667)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3467777888888888888888888887754 3466777778888888888888888888887765 3356667777777
Q ss_pred HHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHH
Q 005969 186 YFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIH 265 (667)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 265 (667)
+...|++++|.+.|+.+. .+....+..+..+...+....|...++++.... |+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~------------------------ 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG------------------------ 155 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc------------------------
Confidence 777777777777775332 122222222334444444556666666654321 00
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcc---cHHHHHHHHhcC--------CChH-HHHHHHHH
Q 005969 266 AKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIV---SWNALILGYASK--------SSPT-SIFLLIEL 333 (667)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~-a~~~~~~m 333 (667)
..+........+..+....+.+.+...+......+.. ....+...+... ++++ |...+.++
T Consensus 156 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 156 -------RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ----------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0001111122333344455555555555555443332 222222222222 2455 66666666
Q ss_pred HHcCCCCCHh-hHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHH
Q 005969 334 LQLGYRPNEF-TFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANII 411 (667)
Q Consensus 334 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l 411 (667)
.+.. |+.. .+... ...+..+...+...|++++|.+.++.. ...|+...+..+
T Consensus 229 l~~~--p~~~~~~~~~------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 282 (537)
T 3fp2_A 229 LSAN--TVDDPLRENA------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282 (537)
T ss_dssp HC----CCCHHHHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHC--CCcchhhHHH------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHH
Confidence 5432 2211 11100 112235667888899999999999887 344446777778
Q ss_pred HHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChh
Q 005969 412 AGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLA 488 (667)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 488 (667)
..++...|++++|.+.+++..+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887652 445677788888888888888888888887753 334567777888888888888
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhC--------
Q 005969 489 LGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----R----NVITWTALISALGLN-------- 551 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~-------- 551 (667)
.|...++.+.+.. |.+...+..+...+...|++++|...|+.+.+ + ....+..+...+...
T Consensus 362 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 362 ESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 8888888888774 44677888888888888888888888887652 1 112234445566666
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 552 --GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 552 --~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
|++++|+..+++..+.. +.+...+..+...|.+.|++++|.+.+++..+.
T Consensus 440 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888888888887752 334667788888888888888888888887544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=2.8e-18 Score=174.40 Aligned_cols=304 Identities=14% Similarity=0.063 Sum_probs=157.0
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 005969 206 DVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVD 285 (667)
Q Consensus 206 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (667)
+...+..+...+.+.|++++|+.+|+++... .+.+..++..+..++...|++++|...++.+.+.+.. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 3445666666777777777777777776653 2334556666666677777777777777777666432 4566777777
Q ss_pred HHHhcCChHHHHHHHhccCCCCc------ccHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 286 FYAKCDNLEGAHLCFSEISNKNI------VSWNALILGYASKSSPTSIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
+|.+.|++++|.+.|+++.+.++ ..+..+...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------- 143 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM--------------------------------------- 143 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---------------------------------------
Confidence 78888888888877777654222 222222211100
Q ss_pred HHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC---CC
Q 005969 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE---RP 434 (667)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~ 434 (667)
..+..+...+...|++++|...++.+ ..|.+...+..+..++...|++++|.+.|+++. ..
T Consensus 144 --------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 209 (450)
T 2y4t_A 144 --------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209 (450)
T ss_dssp --------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 00113445567778888888877665 233344444445555555555555555555443 23
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHhccCChhhHHHHHHHHHHhC
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-NYTFVSL------------LSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
+..+|..+...|...|++++|...|+++.+. .|+ ...+..+ ...+...|++++|...++.+.+..
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555542 222 2222222 334444444444444444444432
Q ss_pred CCCCc--hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 502 IISSD--TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 502 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
...+. ...+..+...+.+.|++++|...++.+. .| +...|..+..+|...|++++|...++++.+
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11000 1233444444444444444444444433 12 233444444444444444444444444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=6.3e-19 Score=183.72 Aligned_cols=414 Identities=12% Similarity=0.000 Sum_probs=229.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK 289 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (667)
|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|++++|...++.+.+... .+...+..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 3444445555555555555555554431 22334444444445555555555555555554432 244455555555666
Q ss_pred cCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHc------CCCCCHhhHHHHHHHhhhhhhhHHHH
Q 005969 290 CDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQL------GYRPNEFTFSHVLRSSLAFQLLQLHC 362 (667)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~ 362 (667)
.|++++|.+.|+.+.. +....+..+..+...+... +...+.++... ...|+.......+..+.....+
T Consensus 106 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV---- 180 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH----
T ss_pred cCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH----
Confidence 6666666665543221 1111111222222233333 55555544321 2233333332222111110000
Q ss_pred HHHHhcCcchhh---hHHHHHHHHH--------hhCCHHHHHHHHHhc-CCCCC-cc-------hhHHHHHHHhhcCChh
Q 005969 363 LIIRMGYENYEY---VLGSLMTSYA--------KSGLISDALAFVTAL-NIPRA-VV-------PANIIAGIYNRTGQYN 422 (667)
Q Consensus 363 ~~~~~~~~~~~~---~~~~l~~~~~--------~~~~~~~a~~~~~~~-~~~~~-~~-------~~~~l~~~~~~~~~~~ 422 (667)
.........++. ....+...+. ..|++++|..+++.+ ...|+ .. .+..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 000000111111 1122222222 224677788877776 33333 22 3455566677778888
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 423 ETVKLLSQLE--RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 423 ~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
+|...+++.. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++.+.+.
T Consensus 261 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 261 DAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 8888877765 3556666777777777888888888888777653 335667777777778888888888888877776
Q ss_pred CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----C
Q 005969 501 EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFK-P----D 572 (667)
Q Consensus 501 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-p----~ 572 (667)
. |.+...+..+...|...|++++|...++++. .| +...+..+...+...|++++|.+.++++.+.... + .
T Consensus 340 ~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 N--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp C--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 4 3356777777888888888888888887765 23 4557777777888888888888888877663210 0 1
Q ss_pred HhHHHHHHHHHhcc----------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 573 RVALIAVLTACRHG----------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 573 ~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...+..+...+... |++++|...++++... .+.+...+..+..++.+.|++++|.+.+++.
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11234445566666 8888888888877544 3344566777888888888888888888776
No 12
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.3e-14 Score=154.94 Aligned_cols=549 Identities=12% Similarity=0.130 Sum_probs=299.0
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhH-hHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHH
Q 005969 6 VVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTF-GGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGL 84 (667)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (667)
....+.++..+...+...++..++-+..+.+ .|....+ +.++. .+...+-++-+.+...+. -+-+-+..+...
T Consensus 543 ~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n-~~e~~~LQTrlle---~Nl~~~pqvadail~~~~--fthyd~~~IA~L 616 (1630)
T 1xi4_A 543 LADITQIVDVFMEYNLIQQCTAFLLDALKNN-RPSEGPLQTRLLE---MNLMHAPQVADAILGNQM--FTHYDRAHIAQL 616 (1630)
T ss_pred ccCHHHHHHHHHhcCcHHHHHHHHHHHHhCC-ChhhhhHhHHHHH---HhhccchhHHHHHHhcCc--cccccHHHHHHH
Confidence 3445566666666677777777666666543 3333322 22222 112223344444555552 255556778888
Q ss_pred hhccCChhHHHHhhccCCC-------CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHH------------
Q 005969 85 YGRHGCLDEVVSVFEDMPR-------KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFV------------ 145 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------ 145 (667)
|-+.|-++.|++.+..+.. .....=.-++..+++ =..+.++++++.|...+++-+.....
T Consensus 617 CE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~ 695 (1630)
T 1xi4_A 617 CEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLST 695 (1630)
T ss_pred HHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCH
Confidence 9999999999999987642 122223345555555 46789999999998766554433222
Q ss_pred -HHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---------------CCCch-
Q 005969 146 -GVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---------------IRDVV- 208 (667)
Q Consensus 146 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~- 208 (667)
.+|..+-+.+.++.-.-.+.... +..-|+.+....|.+.++.|++.+.+++.++-. -+|..
T Consensus 696 ~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~p 773 (1630)
T 1xi4_A 696 QSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLP 773 (1630)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCC
Confidence 23333333333333333333222 245688999999999999999999988876632 11110
Q ss_pred ---------hHH------------HHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH-------------HHHHHHhhc
Q 005969 209 ---------SWN------------TIIGALAESENFGKALELYLRMSVDIVFPNQTTF-------------VYVINSCAG 254 (667)
Q Consensus 209 ---------~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-------------~~ll~~~~~ 254 (667)
... ..|..|++.-++..+-.+.-.+..- .-+.... ..|+..+-+
T Consensus 774 li~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ek 851 (1630)
T 1xi4_A 774 LIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEK 851 (1630)
T ss_pred ceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 011 1233333332222222222111111 0111111 122222222
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH--------------------------------------
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGA-------------------------------------- 296 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-------------------------------------- 296 (667)
.+++..-...++.-...|- .++.++|+|...|...++-.+.
T Consensus 852 rnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~el 930 (1630)
T 1xi4_A 852 RNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLEL 930 (1630)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHH
Confidence 2333333333444344442 2555666666555543321111
Q ss_pred --------------HHHHhcc--------CC---------------------CCcccHHHHHHHHhcCCChH-HHHHHHH
Q 005969 297 --------------HLCFSEI--------SN---------------------KNIVSWNALILGYASKSSPT-SIFLLIE 332 (667)
Q Consensus 297 --------------~~~~~~~--------~~---------------------~~~~~~~~li~~~~~~~~~~-a~~~~~~ 332 (667)
.-+.++. .. .++.--...+++|...|.+. +++++++
T Consensus 931 i~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEK 1010 (1630)
T 1xi4_A 931 INVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEK 1010 (1630)
T ss_pred HHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHH
Confidence 0000000 00 11222344556677888888 8888887
Q ss_pred HHHcCC--CCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHH
Q 005969 333 LLQLGY--RPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANI 410 (667)
Q Consensus 333 m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 410 (667)
..-.+- .-+....+.++.+..+...-+....+.+.+ ......+...+...|.+++|..+|++.+ .+..
T Consensus 1011 ivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd----~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~ 1080 (1630)
T 1xi4_A 1011 IVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD----NYDAPDIANIAISNELFEEAFAIFRKFD------VNTS 1080 (1630)
T ss_pred HHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh----hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHH
Confidence 763311 112223333333333332223333333322 1113346677778888888888888763 1112
Q ss_pred HHHHHh-hcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 411 IAGIYN-RTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 411 l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
.+..+. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++
T Consensus 1081 A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1081 AVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHH
Confidence 122222 6677777777777663 3556777777777788888887777553 456667777777888888888
Q ss_pred HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005969 490 GSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGF 569 (667)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 569 (667)
|.+++...++.. + ++...+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 888877766654 1 3333334777777777777544443 3445556666777777777777777777764
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..|..+..+|++.|++++|.+.+++.
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 35667777777777777777776644
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=3.6e-18 Score=173.63 Aligned_cols=283 Identities=13% Similarity=0.076 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAH 448 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 448 (667)
..+..+...+.+.|++++|...|+.+ ..|.+...+..+..++...|++++|...|+++.+ .+...+..+...|.+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34445566666666666666666665 3444555566666666666666666666665542 234455666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDN----YTFVSL------------LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
.|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...++.+.+.. |.+...+..
T Consensus 107 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 182 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELREL 182 (450)
T ss_dssp TTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 66666666666666653 2332 333333 223556666666666666666553 335566666
Q ss_pred HHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHH---------
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAV--------- 579 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l--------- 579 (667)
+...|...|++++|.+.|+.+. ..+..+|..+...|...|++++|+..|+++... .|+ ...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654 234556666666666666666666666666653 343 2233333
Q ss_pred ---HHHHhccCCHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHH
Q 005969 580 ---LTACRHGGLVREGMELFERMNRSYGVEPE-----MDHYHCVVDLLVRYGHLKEAEKIITTMP-F-PPNALIWRTFLE 649 (667)
Q Consensus 580 ---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~ 649 (667)
...|...|++++|...++++... .|+ ...+..+..++.+.|++++|.+.++++. . +.+..+|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 55666666666666666666433 232 2345566666666666666666666652 2 234566666666
Q ss_pred HHHhcCChhHHhhhhh
Q 005969 650 GCQRCRIAKYDTLNST 665 (667)
Q Consensus 650 ~~~~~~~~~~a~~~~~ 665 (667)
+|...|+.+.|...++
T Consensus 338 ~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH
Confidence 6666666666665544
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.9e-14 Score=151.32 Aligned_cols=363 Identities=12% Similarity=0.066 Sum_probs=241.7
Q ss_pred cchhhHHHHHHHHHhCC-CCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGL-FCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCEL 132 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (667)
.+.++.++++++.-.+. +..+....+.|+.+..+. +.....+..+...+-+ ...+...+...|.+++|.++|++.
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 55555555555552221 123344445555555444 3344444444443222 344666777788888888888774
Q ss_pred HHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHH
Q 005969 133 VRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNT 212 (667)
Q Consensus 133 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 212 (667)
. -.....+.++. ..+++++|.++.+.. -+..+|..+..++...|++++|...|.+. .|...|..
T Consensus 1076 ~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~e 1139 (1630)
T 1xi4_A 1076 D-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYME 1139 (1630)
T ss_pred C-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHH
Confidence 2 11122222322 556777777777754 34677888888888888888888888665 56777888
Q ss_pred HHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 005969 213 IIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDN 292 (667)
Q Consensus 213 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (667)
++..+.+.|++++|.+.|...++.. ++....+.+..+|++.+++++.....+ .++...+..+...|...|+
T Consensus 1140 Va~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1140 VVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888766543 333333447777888887775443321 3355566678888888888
Q ss_pred hHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcc
Q 005969 293 LEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYEN 371 (667)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (667)
+++|..+|... ..|..+...+.+.|+++ |.+.+++. .+..+|..+-.+|...+.++......- ++..
T Consensus 1211 YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl-~Iiv 1278 (1630)
T 1xi4_A 1211 YDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL-HIVV 1278 (1630)
T ss_pred HHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH-hhhc
Confidence 88888888875 47888888888888888 88888765 345667666666666666655444433 3666
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc-C-CCCCcchhHHHHHHHhh--cCChhHHHHHHhcCCC--------CCcchH
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL-N-IPRAVVPANIIAGIYNR--TGQYNETVKLLSQLER--------PDIVSW 439 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~ 439 (667)
++..+..++..|.+.|.+++|..+++.. + .+.....|..+...+.+ .++..++.+.|..-.. .+...|
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Confidence 7777889999999999999999999876 3 33444455555555554 4556666666654332 345679
Q ss_pred HHHHHHHHHcCChhHHHH
Q 005969 440 NIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~ 457 (667)
.-++..|.+.|+++.|..
T Consensus 1359 ~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccHHHHHH
Confidence 999999999999999874
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.4e-17 Score=153.75 Aligned_cols=344 Identities=13% Similarity=0.133 Sum_probs=141.1
Q ss_pred hccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHH
Q 005969 86 GRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHG 165 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 165 (667)
-+.|++++|.++++++.+|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35688999999999996664 8999999999999999999999653 678899999999999999999999888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH
Q 005969 166 LVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF 245 (667)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 245 (667)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45578899999999999999999988864 67779999999999999999999999976 378
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH
Q 005969 246 VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT 325 (667)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 325 (667)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y------- 217 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY------- 217 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH-------
Confidence 88888888888888888888877 267888888888888888888866655543 2222222344444
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CC-CC
Q 005969 326 SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NI-PR 403 (667)
Q Consensus 326 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~ 403 (667)
.+.|++++|..+++.. +. +-
T Consensus 218 ----------------------------------------------------------ek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 218 ----------------------------------------------------------QDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp ----------------------------------------------------------HHTTCHHHHHHHHHHHTTSTTC
T ss_pred ----------------------------------------------------------HHCCCHHHHHHHHHHHhCCcHH
Confidence 4444444444444443 11 11
Q ss_pred CcchhHHHHHHHh--hcCChhHHHHHHhcCCC--------CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 005969 404 AVVPANIIAGIYN--RTGQYNETVKLLSQLER--------PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT 473 (667)
Q Consensus 404 ~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 473 (667)
....|.-+.-.++ +.++..+..+.|..-.. .+...|.-+...|...++++.|.. .|.++ +|+...
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~ 314 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWK 314 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--Chhhhh
Confidence 2222222222222 22333334444443221 356788889999999999998876 44443 334333
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhc
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEM 533 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 533 (667)
-..+.....+..+.+.-.+...-..+. .|...+.|+.++...=+...+.++|+..
T Consensus 315 ~~~f~~~~~kv~n~elyYkai~fyl~~-----~p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 315 EGQFKDIITKVANVELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hHHHHHHHhchhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 334444445555555555544444433 3445666766666655666665555443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=9.9e-16 Score=148.39 Aligned_cols=284 Identities=10% Similarity=-0.013 Sum_probs=237.3
Q ss_pred cchhhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHH
Q 005969 370 ENYEYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIA 444 (667)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 444 (667)
..++.++..+...+...|++++|.++++.+ ..|.+...+..++.++...|++++|...++++.+ .+...|..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344555567888899999999999999998 5666677777888999999999999999998763 45678888999
Q ss_pred HHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 445 ACAHNG-DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 445 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
.+...| ++++|...|++..+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+...|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhH
Confidence 999999 9999999999998754 3356788899999999999999999999999885 43567788899999999999
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCCHhHHHHHHHHHhccCCHHHH
Q 005969 524 GSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLG--------FKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 524 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--------~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
++|...++...+ .+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999998773 356788999999999999999999999998742 123356899999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCChh
Q 005969 593 MELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGC-QRCRIAK 658 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~-~~~~~~~ 658 (667)
...+++..+. .+.+...+..+..++.+.|++++|.+.+++.. ..| +...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999655 34567889999999999999999999999984 555 577777777777 4556543
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=3.4e-15 Score=146.44 Aligned_cols=319 Identities=11% Similarity=-0.002 Sum_probs=211.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHh
Q 005969 277 VFVGSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSS 352 (667)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~ 352 (667)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|+++ |...+.+..+.. |+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~--------- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFT--------- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcc---------
Confidence 44556666777777777777777776543 23445555555556666666 666665555431 1111
Q ss_pred hhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCC----CcchhHHHHHHHhhcCChhHHHHH
Q 005969 353 LAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTAL-NIPR----AVVPANIIAGIYNRTGQYNETVKL 427 (667)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 427 (667)
..+..+...+...|++++|...++.. ...| +...+..+.....
T Consensus 72 ---------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 119 (359)
T 3ieg_A 72 ---------------------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------- 119 (359)
T ss_dssp ---------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------
T ss_pred ---------------------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------
Confidence 11124555555566666666655544 2222 1111111110000
Q ss_pred HhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005969 428 LSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 428 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+.
T Consensus 120 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 188 (359)
T 3ieg_A 120 --------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNT 188 (359)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCH
T ss_pred --------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence 0011222567778888888888888887753 4466778888888888889999988888888764 4477
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CCC-hhhHH------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN-VITWT------------ALISALGLNGFAQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~------------~li~~~~~~~~~~~A~~~~~~~~~~g~~p~ 572 (667)
..+..+...|...|++++|...++... .|+ ...+. .+...+...|++++|+..++++.+. .|+
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~ 266 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPS 266 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 888888888888899999988888776 233 22232 2366688899999999999999885 344
Q ss_pred -H----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHH
Q 005969 573 -R----VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-ALIWR 645 (667)
Q Consensus 573 -~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 645 (667)
. ..+..+..++...|++++|...+++..+. .+.+...+..+..++.+.|++++|.+.+++. ...|+ ...+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 23556778899999999999999998654 3446778899999999999999999999988 45565 55666
Q ss_pred HHHHHHHh
Q 005969 646 TFLEGCQR 653 (667)
Q Consensus 646 ~l~~~~~~ 653 (667)
.+..+...
T Consensus 345 ~l~~~~~~ 352 (359)
T 3ieg_A 345 GLEKAQRL 352 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=1.8e-15 Score=148.46 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=237.2
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHH
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACA 447 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 447 (667)
+..+..+...+...|++++|...|+.. ..|.+...+..+..++...|++++|...+++..+ .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344557888899999999999999988 5666778889999999999999999999998763 35577888999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 005969 448 HNGDYKEVLELFKYMRAARIYP----DNYTFVSL------------LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN 511 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (667)
..|++++|...++++.+. .| +...+..+ ...+...|+++.|...++.+.+.. |.+...+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 158 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRE 158 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHH
Confidence 999999999999999875 45 33344444 477889999999999999999875 45788999
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHH----------
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALI---------- 577 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~---------- 577 (667)
.+...+...|++++|...++.+.+ .+...+..+...+...|++++|.+.+++..+. .|+ ...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 999999999999999999998763 36678999999999999999999999999985 454 33333
Q ss_pred --HHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc-----chhHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 005969 578 --AVLTACRHGGLVREGMELFERMNRSYGVEPEM-----DHYHCVVDLLVRYGHLKEAEKIITTMP--FPPNALIWRTFL 648 (667)
Q Consensus 578 --~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~ 648 (667)
.+...+.+.|++++|...++++... .|+. ..+..+..++...|++++|.+.+++.. .+.+..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2366789999999999999999655 2332 235568889999999999999999883 344788999999
Q ss_pred HHHHhcCChhHHhhhhhc
Q 005969 649 EGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 649 ~~~~~~~~~~~a~~~~~~ 666 (667)
..+...|+.+.|....++
T Consensus 314 ~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999887764
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=3e-15 Score=143.14 Aligned_cols=331 Identities=11% Similarity=0.087 Sum_probs=123.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHHHHHHhCCCCCChhHHhhHHHHh
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQASVLKNGLFCADAFVGTALLGLY 85 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (667)
+|..|+.++.+.|++++|++.|.+. +|..+|..+.. |... ++++|...++...+. .+++.+.+.|+.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHH
Confidence 5556666666666666666666432 34445555555 3333 555555555544442 23345555555666
Q ss_pred hccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHH
Q 005969 86 GRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHG 165 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 165 (667)
.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+.
T Consensus 105 ~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 105 AKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ----CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 666666655555532 44455555666666666666666666544 245555555555555555555555
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhH
Q 005969 166 LVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTF 245 (667)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 245 (667)
.+ .++.+|..++.+|+..|+++.|......+. .++.....++..|.+.|.+++|+.+++....
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~---------- 235 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG---------- 235 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----------
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC----------
Confidence 44 245555555555555555555555444433 2222233455555555555555555554432
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh--cCChHHHHHHHhccCC--------CCcccHHHHH
Q 005969 246 VYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK--CDNLEGAHLCFSEISN--------KNIVSWNALI 315 (667)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~--------~~~~~~~~li 315 (667)
.. +-....|+-|.-+|++ -+++.+..+.|..-.. .+...|.-+.
T Consensus 236 -------------------------le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 236 -------------------------LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp -------------------------ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred -------------------------Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 21 1122333333333333 2344444444443322 2345666777
Q ss_pred HHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHH
Q 005969 316 LGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALA 394 (667)
Q Consensus 316 ~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 394 (667)
-.|.+.++++ |... |.+. .|+...-..+.....+....++.-.+..-=+.-.|..++.|+.++...=+...+.+
T Consensus 290 ~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHH
T ss_pred HHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHH
Confidence 7777777777 6553 3332 22222222233333333333444444443334455567788888887888888888
Q ss_pred HHHhcCCCCCcch
Q 005969 395 FVTALNIPRAVVP 407 (667)
Q Consensus 395 ~~~~~~~~~~~~~ 407 (667)
+++..+.-|-..+
T Consensus 365 ~~~~~~~l~l~~~ 377 (449)
T 1b89_A 365 YFSKVKQLPLVKP 377 (449)
T ss_dssp HHHHTTCTTTTHH
T ss_pred HHHHcCCcHHHHH
Confidence 7776654444433
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=2.4e-15 Score=148.17 Aligned_cols=279 Identities=9% Similarity=-0.006 Sum_probs=216.3
Q ss_pred HHHhhCCHHHHHH-HHHhc-CCCC-----CcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCC
Q 005969 382 SYAKSGLISDALA-FVTAL-NIPR-----AVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGD 451 (667)
Q Consensus 382 ~~~~~~~~~~a~~-~~~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 451 (667)
.+...|++++|.+ .++.. ...+ +...+..+...+...|++++|...|+++.+ .+...+..+...+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445588889988 88765 2111 355677888999999999999999998763 455678888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH---------------HHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM---------------LIDM 516 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~ 516 (667)
+++|...++++.+.. +.+..++..+...+...|+.+.|...++.+.+.... +...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999998864 447788999999999999999999999999887532 3333321 1333
Q ss_pred HHhcCChHHHHHHHHhcC--CC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVRE 591 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (667)
+...|++++|...++.+. .| +..++..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 348899999999999887 34 46788999999999999999999999998852 3357789999999999999999
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCChh
Q 005969 592 GMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP------------NALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p------------~~~~~~~l~~~~~~~~~~~ 658 (667)
|...++++... .+.+...+..+..++.+.|++++|.+.+++.. ..| ...+|..+..++...|+.+
T Consensus 270 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 99999998655 34556788999999999999999999998872 122 1689999999999999999
Q ss_pred HHhhhhhc
Q 005969 659 YDTLNSTK 666 (667)
Q Consensus 659 ~a~~~~~~ 666 (667)
.|..+.++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99887664
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.8e-14 Score=139.46 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=166.6
Q ss_pred HHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcC-ChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhH
Q 005969 381 TSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTG-QYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKE 454 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 454 (667)
..+...|++++|...++.+ ..|.+...+..+...+...| ++++|...|++..+ .+...|..+...+...|++++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 3344445555555555444 23334444445555555555 55555556655442 345567778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+...+...|++++|...++...
T Consensus 144 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 144 AMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888888887753 2344566667778888888888888888887764 4467788888888888888888888887665
Q ss_pred C-----------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 535 D-----------R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 535 ~-----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+ | +...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 2 2 34688888899999999999999999988852 335678888999999999999999999987433
Q ss_pred hCCCCCcchhHHHHHHH-hhcCCh
Q 005969 603 YGVEPEMDHYHCVVDLL-VRYGHL 625 (667)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~~g~~ 625 (667)
.+.+...+..+..++ ...|+.
T Consensus 300 --~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 --RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp --CSCCHHHHHHHHHHHHTTTTC-
T ss_pred --CCCchHHHHHHHHHHHHHhCch
Confidence 233556677777777 445543
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=3.2e-13 Score=138.17 Aligned_cols=156 Identities=13% Similarity=-0.019 Sum_probs=96.0
Q ss_pred chHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHhCCCCCch
Q 005969 437 VSWNIVIAACAH----NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL-----CNLALGSSLHGLIKKTEIISSDT 507 (667)
Q Consensus 437 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ 507 (667)
..+..+...|.. .+++++|..+|++..+.| +...+..+...|... ++.++|...+++..+.+ ++
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~ 328 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DA 328 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CH
Confidence 344444444544 566666666666666543 334444455555544 66777777777666654 34
Q ss_pred hHHhHHHHHHHhcC---ChHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 508 FVCNMLIDMYGKCG---SIGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 508 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
..+..+...|...| +.++|.+.|+...+ .+...+..|...|.. .+++++|.++|++..+.| ++..+..|
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 55566666665544 56667777766553 355566666666666 667777777777777654 45566666
Q ss_pred HHHHhc----cCCHHHHHHHHHHhHHh
Q 005969 580 LTACRH----GGLVREGMELFERMNRS 602 (667)
Q Consensus 580 i~~~~~----~g~~~~A~~~~~~~~~~ 602 (667)
...|.. .+++++|..+|++....
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 666666 67777777777777444
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=2.2e-13 Score=139.35 Aligned_cols=348 Identities=9% Similarity=-0.035 Sum_probs=209.7
Q ss_pred CchHHHHHHHHHHHh----cCChhHHHHhhccCCC-CCchhHHHHHHHHHc----cCChhHHHHHHHHhHhCCcCCChhh
Q 005969 174 YELLVANSLVNMYFQ----CAGIWSAEKMFKDVEI-RDVVSWNTIIGALAE----SENFGKALELYLRMSVDIVFPNQTT 244 (667)
Q Consensus 174 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t 244 (667)
.+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 366777777777777 7888888888876543 456677777777777 788888888888877664 3444
Q ss_pred HHHHHHHhhc----cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHhccCC-CCcccHHHHH
Q 005969 245 FVYVINSCAG----LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK----CDNLEGAHLCFSEISN-KNIVSWNALI 315 (667)
Q Consensus 245 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li 315 (667)
+..+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+-
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445455554 667788888887777665 44555666666665 6677777777766543 3444455555
Q ss_pred HHHhc----CCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHh----h
Q 005969 316 LGYAS----KSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAK----S 386 (667)
Q Consensus 316 ~~~~~----~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 386 (667)
..|.. .++.+ |...+.+..+.| +...+ ..+...|.. .
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~-------------------------------~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQ-------------------------------LHLADMYYFGIGVT 236 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-------------------------------HHHHHHHHHTSSSC
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHH-------------------------------HHHHHHHHcCCCCC
Confidence 55554 55555 666666554432 11111 244444443 5
Q ss_pred CCHHHHHHHHHhcCCCCCcchhHHHHHHHhh----cCChhHHHHHHhcCCC-CCcchHHHHHHHHHHc-----CChhHHH
Q 005969 387 GLISDALAFVTALNIPRAVVPANIIAGIYNR----TGQYNETVKLLSQLER-PDIVSWNIVIAACAHN-----GDYKEVL 456 (667)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~ 456 (667)
++.++|.+.|+..-...+...+..+...+.. .+++++|.+.|++..+ .+...+..+...|... +++++|.
T Consensus 237 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 6666666666665333344444555555554 5666666666665543 3444555555555555 5666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCChHHHHHH
Q 005969 457 ELFKYMRAARIYPDNYTFVSLLSACSKLC---NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGSIGSSVKI 529 (667)
Q Consensus 457 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 529 (667)
..|++..+.| +...+..+...|...| +.++|.+.+++..+.+ ++..+..|...|.. .+++++|...
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 6666666643 3334444444444434 5566666666666553 45566666666665 5666666666
Q ss_pred HHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 005969 530 FNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLG 568 (667)
Q Consensus 530 ~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g 568 (667)
|+...+ .+...+..|...|.. .++.++|...|++..+.|
T Consensus 390 ~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 390 MRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 665543 345555666666665 566666666666666654
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=2.7e-13 Score=140.19 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD-N-YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.+.|..+|+...+.. |.+...+...
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~ 396 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHH
Confidence 445666677777778888888888888773 454 2 467777777777788888888888877653 2223333222
Q ss_pred HHH-HHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHhcc
Q 005969 514 IDM-YGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLG-FKPD--RVALIAVLTACRHG 586 (667)
Q Consensus 514 ~~~-~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~p~--~~~~~~li~~~~~~ 586 (667)
... +...|+.++|..+|+...+ | +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 222 2346777788877776652 3 45677777777777888888888888877753 1222 23666667777777
Q ss_pred CCHHHHHHHHHHhHHh
Q 005969 587 GLVREGMELFERMNRS 602 (667)
Q Consensus 587 g~~~~A~~~~~~~~~~ 602 (667)
|+.+.+..+.+++.+.
T Consensus 477 G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 477 GDLASILKVEKRRFTA 492 (530)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888887777444
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.7e-15 Score=149.07 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=164.4
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACS 482 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 482 (667)
..+......+.+.|++++|...|+++. ..+...|..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 334555555555555555555666554 2345567777777777777777777777777643 334667777777777
Q ss_pred ccCChhhHHHHHHHHHHhCCCCC--------chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC---ChhhHHHHHHHHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISS--------DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR---NVITWTALISALG 549 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~li~~~~ 549 (667)
..|++++|...++.+.+.....+ ....+..+...+...|++++|...++++. .| +...+..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 77777777777777766531110 01222334667777777888887777766 23 4567777777777
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 550 LNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
..|++++|++.++++.+.. +.+..+|..+..+|...|++++|...++++.+. .+.+..++..+..+|.+.|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 7888888888888877742 334667777777888888888888888877544 2334566777778888888888888
Q ss_pred HHHHhCC-CCC-------------CHHHHHHHHHHHHhcCChhHHhhhhh
Q 005969 630 KIITTMP-FPP-------------NALIWRTFLEGCQRCRIAKYDTLNST 665 (667)
Q Consensus 630 ~~~~~m~-~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 665 (667)
+.+++.. ..| +..+|..+..++...|+.+.+..+.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777762 111 25677778888888888777776554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=4.9e-15 Score=145.69 Aligned_cols=256 Identities=11% Similarity=0.011 Sum_probs=211.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcC
Q 005969 376 LGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNG 450 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 450 (667)
+..+...+.+.|++++|.+.|+.+ ..|.+...+..+..++...|++++|+..|++..+ .+...+..+...|...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 447788999999999999999998 5677788899999999999999999999998763 45678999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 451 DYKEVLELFKYMRAARIYPDN-----------YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
++++|...++++.+. .|+. ..+..+...+...|++++|...++++.+......++.++..+...|..
T Consensus 148 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 148 HQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp CHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 999999999999874 3432 223345778899999999999999999986433368899999999999
Q ss_pred cCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHH
Q 005969 520 CGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 520 ~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
.|++++|...|+++. . .+..+|..+...|...|++++|++.|+++.+. .| +..++..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999876 3 46779999999999999999999999999985 45 477899999999999999999999
Q ss_pred HHHhHHhhCC----------CCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 596 FERMNRSYGV----------EPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 596 ~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
++++.....- ..+..++..+..++...|+.+.|.++..+-
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9998654211 113678999999999999999999988764
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=6.8e-17 Score=166.87 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=86.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT-------DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAV 579 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 579 (667)
..+|++||++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467777777777777777777775543 477777777777777777777777777777777777777777777
Q ss_pred HHHHhccCCH-HHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHH
Q 005969 580 LTACRHGGLV-REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 580 i~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
|.++++.|+. ++|.++|++|.. .|+.||..+|++++....+.+-++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHH
Confidence 7777777764 667777777743 47777777777777666655433333
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=167.60 Aligned_cols=147 Identities=9% Similarity=0.058 Sum_probs=127.7
Q ss_pred hhHHhhHHHHhhccCChhHHHHhhccCC-------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHH
Q 005969 75 AFVGTALLGLYGRHGCLDEVVSVFEDMP-------RKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGV 147 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 147 (667)
..+|++||.+|++.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHhcccCch-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCC-----CchhHHHHHHHHHccC
Q 005969 148 IHGLSNEQDL-EFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIR-----DVVSWNTIIGALAESE 221 (667)
Q Consensus 148 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~ 221 (667)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.+++..+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999988887777777776666521 2334445555566554
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=9e-15 Score=144.06 Aligned_cols=282 Identities=9% Similarity=-0.055 Sum_probs=198.9
Q ss_pred HHhcCChHHHHH-HHHHHHHCCCC-C--CchhHhHhhc--cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccC
Q 005969 16 YSRCGYVEDALR-MFLYMINRGFE-P--TQFTFGGLLS--CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHG 89 (667)
Q Consensus 16 ~~~~~~~~~a~~-~~~~m~~~~~~-p--~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 89 (667)
+.-.|++++|+. .|++..+.... | +...+..+-. ...+++++|...++++++.. +.+...+..+...|.+.|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCc
Confidence 344567777777 77765543111 1 1223333222 34447777777777777665 667788888889999999
Q ss_pred ChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChh-hHHH---------------HHHH
Q 005969 90 CLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTES-SFVG---------------VIHG 150 (667)
Q Consensus 90 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~---------------li~~ 150 (667)
++++|...|++..+ .+..++..+...+...|++++|++.++++.+.. |+.. .+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999987653 466788889999999999999999999988754 3222 2211 2333
Q ss_pred hcccCchHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccCChhHH
Q 005969 151 LSNEQDLEFGEQIHGLVIKNGFDY-ELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESENFGKA 226 (667)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 226 (667)
+...|++++|...++.+.+..... +..++..+...|...|++++|...|++.. ..+...|..+...+...|++++|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 337889999999999988875432 57888889999999999999998888765 23566788888889999999999
Q ss_pred HHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC----------CchHHHHHHHHHHhcCChHHH
Q 005969 227 LELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC----------DVFVGSALVDFYAKCDNLEGA 296 (667)
Q Consensus 227 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a 296 (667)
...|++..... +.+...+..+...+...|++++|...++.+.+..... ...++..+..++...|+.++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99998887642 3346677777888888899999999888887764332 156788888888888888888
Q ss_pred HHHHhc
Q 005969 297 HLCFSE 302 (667)
Q Consensus 297 ~~~~~~ 302 (667)
..++..
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 887763
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=4.5e-13 Score=138.53 Aligned_cols=127 Identities=10% Similarity=-0.005 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA-CSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|+.+.|..+|+...+.. |.++..+..++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 45555555566666777777777766532 1122222222111 234678888888888777664 4467778888888
Q ss_pred HHhcCChHHHHHHHHhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 517 YGKCGSIGSSVKIFNEMTD--R-N----VITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
+.+.|+.++|..+|++... | + ...|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887652 2 2 236777788788889999999998888774
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.8e-14 Score=139.17 Aligned_cols=262 Identities=9% Similarity=-0.059 Sum_probs=205.6
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHH
Q 005969 4 RNVVSFNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLG 83 (667)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (667)
.+...|..+...+...|++++|+.+|+++.+. .+.+...+..+..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~ 63 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA-----------------------------------APEREEAWRSLGL 63 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------CCCCHHHHHHHHH
Confidence 35567788888889999999999999988875 2445566677778
Q ss_pred HhhccCChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCCh-hhHHHH------------
Q 005969 84 LYGRHGCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTE-SSFVGV------------ 147 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l------------ 147 (667)
.+.+.|++++|...|++..+ .+...+..+...+...|++++|++.++++.+.. |+. ..+..+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHH
Confidence 88888888888888887653 355678888888888899999999998887753 332 233222
Q ss_pred --HH-HhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCC---CCCchhHHHHHHHHHccC
Q 005969 148 --IH-GLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVE---IRDVVSWNTIIGALAESE 221 (667)
Q Consensus 148 --i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 221 (667)
.. .+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.+++.. ..+...|..+...+...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 3778899999999999998875 3467888999999999999999999998765 235677888899999999
Q ss_pred ChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCC-----------CchHHHHHHHHHHhc
Q 005969 222 NFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALEC-----------DVFVGSALVDFYAKC 290 (667)
Q Consensus 222 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~ 290 (667)
++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+..... +...+..+..++.+.
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999999999987652 3356778888888999999999999999988876543 467888899999999
Q ss_pred CChHHHHHHHhccC
Q 005969 291 DNLEGAHLCFSEIS 304 (667)
Q Consensus 291 g~~~~a~~~~~~~~ 304 (667)
|+.++|..++++..
T Consensus 300 g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 300 NRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988654
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=1.8e-14 Score=135.33 Aligned_cols=254 Identities=11% Similarity=0.025 Sum_probs=203.1
Q ss_pred HHHHHhhCCHHHHHHHHHhc-CCCCCc--chhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 380 MTSYAKSGLISDALAFVTAL-NIPRAV--VPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
++.....|++..|+..++.. ...|+. .....+..+|...|+++.|...++....|+..++..+...+...|+.++|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34566789999999988876 333332 344667889999999999999888766667778888889999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-
Q 005969 457 ELFKYMRAARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT- 534 (667)
Q Consensus 457 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 534 (667)
+.++++...+..|+ ...+..+...+...|++++|.+.++. |.+...+..++..|.+.|++++|.+.|+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998776665 45566666889999999999999987 4488899999999999999999999999987
Q ss_pred -CCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc
Q 005969 535 -DRNVITW---TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMD 610 (667)
Q Consensus 535 -~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (667)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.... -+-++.
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~ 235 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPE 235 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 4554322 22334445568999999999999987 3557789999999999999999999999998665 355677
Q ss_pred hhHHHHHHHhhcCChHH-HHHHHHhCC-CCCCHHH
Q 005969 611 HYHCVVDLLVRYGHLKE-AEKIITTMP-FPPNALI 643 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~-A~~~~~~m~-~~p~~~~ 643 (667)
++..++..+...|+.++ +.++++++. ..|+...
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 89999999999999876 568888773 5555443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=2.4e-14 Score=138.35 Aligned_cols=255 Identities=10% Similarity=-0.017 Sum_probs=181.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHc
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHN 449 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 449 (667)
.+-.+...+...|++++|..+++.+ ..|.+...+..+..++...|++++|...+++..+ .+...+..+...+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 3446677888899999999988887 4555666777778888888888888888877652 3456677777888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHH--------------HH-HHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNY-TFVSL--------------LS-ACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
|++++|...++++.+.. |+.. .+..+ .. .+...|+++.|...++.+.+.. |.+...+..+
T Consensus 103 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 178 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHASL 178 (327)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 88888888888887642 3322 22222 22 2667778888888888877764 3367777788
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
...|...|++++|.+.++.+. .| +...+..+...+...|++++|.+.++++.+.. +.+..++..+...|...|+++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 888888888888888887765 23 45677777888888888888888888877742 334667777888888888888
Q ss_pred HHHHHHHHhHHhhCCCC-----------CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 591 EGMELFERMNRSYGVEP-----------EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|.+.++++..... .. +...+..+..++.+.|+.++|.+++++.
T Consensus 258 ~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888887754411 10 3556777778888888888888777655
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=8.8e-14 Score=130.71 Aligned_cols=224 Identities=12% Similarity=-0.026 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
..+.++|...|+++.|...++....|+..++..+...+...++.+ |+..++++...+..|+...+.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~------------- 104 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL------------- 104 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH-------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH-------------
Confidence 445667777778777777766644444455555666666666666 666666666655555443332
Q ss_pred HHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchH
Q 005969 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSW 439 (667)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 439 (667)
..+...+...|++++|++ .+++ ..+...+
T Consensus 105 -----------------~~la~~~~~~g~~~~Al~--------------------------------~l~~--~~~~~~~ 133 (291)
T 3mkr_A 105 -----------------LMAASIYFYDQNPDAALR--------------------------------TLHQ--GDSLECM 133 (291)
T ss_dssp -----------------HHHHHHHHHTTCHHHHHH--------------------------------HHTT--CCSHHHH
T ss_pred -----------------HHHHHHHHHCCCHHHHHH--------------------------------HHhC--CCCHHHH
Confidence 133344555555555555 6666 3556677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTF---VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
..++..+.+.|++++|...++++.+.. |+.... ...+..+...|+.++|..+++++.+.. |.++..++.+...
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~ 209 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 788888888999999999999988753 553211 122333445578888888888888773 5577788888888
Q ss_pred HHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCCHh
Q 005969 517 YGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQR-ALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~g~~p~~~ 574 (667)
+.+.|++++|...|++.. .| +..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 888888888888887765 34 55677777777777777755 56777777773 56533
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=1.2e-12 Score=117.44 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=134.0
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. |.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 44556667777777888888888888777642 3355677777777778888888888888777765 44667777777
Q ss_pred HHHHhc-----------CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 005969 515 DMYGKC-----------GSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVL 580 (667)
Q Consensus 515 ~~~~~~-----------~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li 580 (667)
..+... |++++|...+++.. .| +...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777777 88888888887766 34 45677777888888888888888888888765 6677788888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 581 TACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+|...|++++|...+++..+. .+.+...+..+..++.+.|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888887554 3445567777888888888888888877765
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=2.4e-11 Score=123.93 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------------------cCChhhHHHHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK-------------------LCNLALGSSLHGL 496 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~ 496 (667)
...+..+...|...|++++|...+++..+.. +-+..++..+...|.. .+..+.|...++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555555556666666666666555532 1123333333333221 1234567777777
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChh----hHHHHHH-HHHhCCChHHHHHHHHHHHHcCC
Q 005969 497 IKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVI----TWTALIS-ALGLNGFAQRALEKFREMEFLGF 569 (667)
Q Consensus 497 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~----~~~~li~-~~~~~~~~~~A~~~~~~~~~~g~ 569 (667)
..+.. |.+...+..+...|...|++++|...|++.. +++.. .+..+.. .....|+.++|+..|++..+ +
T Consensus 326 a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i 401 (472)
T 4g1t_A 326 ADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--I 401 (472)
T ss_dssp HHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--S
T ss_pred HhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 77664 4466778888889999999999999998765 33332 1222222 23467889999999999888 4
Q ss_pred CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHH
Q 005969 570 KPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPNALIW 644 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~ 644 (667)
.|+....... ...+.++++..... -+.+..+|..+..++...|++++|.+.|++.- ..|+..+|
T Consensus 402 ~~~~~~~~~~---------~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 402 NQKSREKEKM---------KDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCCCHHHHHH---------HHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred CcccHHHHHH---------HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 6664432222 23344555555333 35667889999999999999999999998872 44555444
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=1.4e-11 Score=123.81 Aligned_cols=372 Identities=12% Similarity=0.003 Sum_probs=198.3
Q ss_pred HHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh---hHHHHhhccCCCCCchhHHHHHHHHHccC---
Q 005969 148 IHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI---WSAEKMFKDVEIRDVVSWNTIIGALAESE--- 221 (667)
Q Consensus 148 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~--- 221 (667)
...+.+.|++++|.+++....+.|. ...+..|...|...|+. ++|.+.|++..+.+...+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3344455666666666666665542 22334444555556666 77777777776556666666666555555
Q ss_pred --ChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhH---HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC----
Q 005969 222 --NFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSIL---GKSIHAKVIKNALECDVFVGSALVDFYAKCDN---- 292 (667)
Q Consensus 222 --~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 292 (667)
++++|+..|++....|... .+..+-..+...+..+. +.+.+......| +......|...|...+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 6788998888888765433 34444444444444333 344444444444 45566677777777774
Q ss_pred hHHHHHHHhccCCCCcccHHHHHHHHhcCC---ChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhc
Q 005969 293 LEGAHLCFSEISNKNIVSWNALILGYASKS---SPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMG 368 (667)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 368 (667)
.+.+..+++.....++..+..+-..|...| +.+ |+..|.+..+.|.......+
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~----------------------- 217 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVD----------------------- 217 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHH-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHH-----------------------
Confidence 444555666666666667888888888888 667 88888777766543322112
Q ss_pred CcchhhhHHHHHHHHHhh----CCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHH
Q 005969 369 YENYEYVLGSLMTSYAKS----GLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIA 444 (667)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 444 (667)
.+...|... ++.++|.+.|+.. ...++..+..+..
T Consensus 218 ---------~Lg~~y~~g~~~~~d~~~A~~~~~~a--------------------------------a~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 218 ---------SVARVLGDATLGTPDEKTAQALLEKI--------------------------------APGYPASWVSLAQ 256 (452)
T ss_dssp ---------HHHHHHTCGGGSSCCHHHHHHHHHHH--------------------------------GGGSTHHHHHHHH
T ss_pred ---------HHHHHHhCCCCCCCCHHHHHHHHHHH--------------------------------cCCCHHHHHHHHH
Confidence 233333322 4666666654432 2223333444444
Q ss_pred H-H--HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----ChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 445 A-C--AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC-----NLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 445 ~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
. + ...+++++|..+|++..+.| +...+..+...|. .| +.++|...+++.. .| ++..+..|...
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR----EVAADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT----CHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC----CHHHHHHHHHH
Confidence 4 2 34667777777777777655 4445555555554 33 6777777777666 32 55666666666
Q ss_pred HHh----cCChHHHHHHHHhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 005969 517 YGK----CGSIGSSVKIFNEMTDR-NVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG 587 (667)
Q Consensus 517 ~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 587 (667)
|.. ..+.++|...|+...++ +......|...|.. ..+.++|..+|+...+.| .++.......+......+
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPA 406 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHH
Confidence 655 33677777777765543 44555566666553 346777777777777766 233333333333334445
Q ss_pred CHHHHHHHHHHhHHh
Q 005969 588 LVREGMELFERMNRS 602 (667)
Q Consensus 588 ~~~~A~~~~~~~~~~ 602 (667)
+..+|..+.++..+.
T Consensus 407 ~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 407 QRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666677766665443
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2.3e-11 Score=113.80 Aligned_cols=237 Identities=10% Similarity=0.024 Sum_probs=178.7
Q ss_pred HHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccC
Q 005969 411 IAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPD--NYTFVSLLSACSKLC 485 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~ 485 (667)
....+...|++++|+..|++.. ..+...+..+...+...|++++|+..+++..+.+-.|+ ..+|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3344445555555555665544 23455788888899999999999999999988432222 334788888999999
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
+++.|...++...+.. |.+...+..+...|...|++++|...+++..+ | +...|..+...+...+++++|++.++
T Consensus 89 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 44778999999999999999999999999874 3 45667777734444569999999999
Q ss_pred HHHHcCCCCC-HhHHHHHHHHHhccCC---HHHHHHHHHHhHHhhCCCCCc------chhHHHHHHHhhcCChHHHHHHH
Q 005969 563 EMEFLGFKPD-RVALIAVLTACRHGGL---VREGMELFERMNRSYGVEPEM------DHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 563 ~~~~~g~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
+..+. .|+ ...+..+...+...|+ +++|...+++..+...-.|+. ..|..+...+.+.|++++|.+.+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99985 454 6678888888888888 888999999886654444543 57888999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHH
Q 005969 633 TTMP-FPP-NALIWRTFLEGC 651 (667)
Q Consensus 633 ~~m~-~~p-~~~~~~~l~~~~ 651 (667)
++.- ..| +...+..+-...
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC---
T ss_pred HHHHhcCccHHHHHHHhhhhh
Confidence 9883 445 455555554443
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=1.7e-11 Score=113.17 Aligned_cols=204 Identities=8% Similarity=-0.031 Sum_probs=166.2
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. |.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 4557777888889999999999999988763 4467788888889999999999999999988875 446788888999
Q ss_pred HHHhcCChHHHHHHHHhcCC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD----R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
.|...|++++|.+.++++.+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998765 3 34577788889999999999999999998853 335778888999999999999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHH
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWR 645 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~ 645 (667)
+|...++++.+. .+.+...+..+...+.+.|+.++|.+.++++. ..|+...+.
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999988443 34556678888889999999999999998883 445544433
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=6.3e-12 Score=116.54 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=175.6
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSWNIVIAACAHNGDYKEVLELFKYMRAAR--IYPD----NYTFVSL 477 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 477 (667)
..+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. ..|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3566788888999999999998887542 667788888899999999999999999887643 1122 4778888
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCCh
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR---NVITWTALISALGLNGFA 554 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 554 (667)
...+...|+++.|...++.+.+.. + +. ..+...|++++|...++.+.+. +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~-~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--R-TA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--C-CH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--c-hh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 888999999999999999988864 3 43 4466678889999999887642 445778888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHh
Q 005969 555 QRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
++|+..+++..+.. +.+..++..+...|...|++++|...+++..+. .+.+...+..+..++.+.|++++|.+.+++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998853 345778889999999999999999999998655 344567888899999999999999999988
Q ss_pred C
Q 005969 635 M 635 (667)
Q Consensus 635 m 635 (667)
.
T Consensus 233 a 233 (258)
T 3uq3_A 233 A 233 (258)
T ss_dssp H
T ss_pred H
Confidence 7
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=6.6e-12 Score=112.51 Aligned_cols=192 Identities=14% Similarity=0.000 Sum_probs=139.1
Q ss_pred CCcchhHHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005969 403 RAVVPANIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLS 479 (667)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 479 (667)
++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444444555555555555555556665543 345667778888888999999999999888753 335667888888
Q ss_pred HHhcc-----------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHH
Q 005969 480 ACSKL-----------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNVITWTALIS 546 (667)
Q Consensus 480 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~ 546 (667)
.+... |++++|...+++..+.. |.+...+..+...|...|++++|...|++..+ .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888 99999999999998875 54788888999999999999999999987652 56778888999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 547 ALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|...|++++|+..|++..+. .| +...+..+...+...|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999885 55 5678889999999999999999999876
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=9.5e-11 Score=119.50 Aligned_cols=266 Identities=9% Similarity=-0.066 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHhc--CCCCCcchhHHHHHH---HhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHH----cCChhH
Q 005969 387 GLISDALAFVTAL--NIPRAVVPANIIAGI---YNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAH----NGDYKE 454 (667)
Q Consensus 387 ~~~~~a~~~~~~~--~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~----~g~~~~ 454 (667)
+++++|.+.|++. ..|.+...+..+..+ +...++.++|++.+++.. ..+...+..+...+.. .|++++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 3466666666655 223333333333332 334455566666666544 2334445555444444 467889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc--------------
Q 005969 455 VLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-------------- 520 (667)
Q Consensus 455 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 520 (667)
|.+.+++..... +.+..++..+...+...|+.+.|...++++.+.. |.+..++..+...|...
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999988753 4567788889999999999999999999998875 54677777776665432
Q ss_pred -----CChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHhccCCH
Q 005969 521 -----GSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV--ALIAVLT-ACRHGGLV 589 (667)
Q Consensus 521 -----~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~--~~~~li~-~~~~~g~~ 589 (667)
+..+.|...++... ..+...+..+...|...|++++|++.|++..+....|... .+..+.. .....|++
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 23566777776655 2356688889999999999999999999998854333221 2333333 23578999
Q ss_pred HHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHhhhhhcC
Q 005969 590 REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-P-FPPNALIWRTFLEGCQRCRIAKYDTLNSTKC 667 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 667 (667)
++|+..+++..+ +.|+....... ...+.+++++. . .+.+..+|..+...+...|+.+.|....+++
T Consensus 389 ~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998743 45554322222 23333444433 1 3456789999999999999999998887764
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.2e-11 Score=114.61 Aligned_cols=216 Identities=14% Similarity=0.031 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--C----C----cchHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--P----D----IVSWNI 441 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~----~~~~~~ 441 (667)
..+..+...+...|++++|...|+.. .. .+...+..+..++...|++++|.+.+++..+ | + ...+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34567888999999999999999987 33 7788889999999999999999999988763 2 1 467888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
+...+...|++++|...+++..+. .|+.. .+...|++++|...++.+.+.. |.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhc
Confidence 899999999999999999999884 56643 4556688999999999988864 446778889999999999
Q ss_pred ChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 522 SIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
++++|...+++.. ..+...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999876 2457788999999999999999999999998852 33477889999999999999999999998
Q ss_pred hHHh
Q 005969 599 MNRS 602 (667)
Q Consensus 599 ~~~~ 602 (667)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8544
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=1.7e-11 Score=110.88 Aligned_cols=207 Identities=10% Similarity=-0.037 Sum_probs=155.7
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 3456667777888888888888888887753 3456677788888888888888888888887764 446777888888
Q ss_pred HHHhc-CChHHHHHHHHhcCC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 516 MYGKC-GSIGSSVKIFNEMTD----R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 516 ~~~~~-~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
.+... |++++|...++.+.+ | +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888887764 2 14567778888888888999998888888752 23467788888888888999
Q ss_pred HHHHHHHHHhHHhhCCC-CCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 005969 590 REGMELFERMNRSYGVE-PEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTFL 648 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~ 648 (667)
++|...++++.+. .+ .+...+..+...+...|+.++|..+++.+. ..|+......++
T Consensus 164 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999888888554 23 455667777777788888888888888873 456555444443
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=4.9e-11 Score=119.83 Aligned_cols=243 Identities=7% Similarity=-0.020 Sum_probs=124.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhccCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCCh
Q 005969 12 IISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLSCDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCL 91 (667)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 91 (667)
+...+.+.|++++|..+|++..+.| ++..+..|...|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-------------------------------------~~~A~~~Lg~~y~~~g~~ 51 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-------------------------------------YSEAQVGLADIQVGTRDP 51 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------------------------------------CCTGGGTCC---------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHHHHccCCC
Confidence 4555666677777777777666543 222233444555556666
Q ss_pred ---hHHHHhhccCCCCCchhHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH---HH
Q 005969 92 ---DEVVSVFEDMPRKSLVTWNSIVSIFGKHG-----FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE---FG 160 (667)
Q Consensus 92 ---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a 160 (667)
++|...|++..+.+...+..+...+...+ ++++|++.|++..+.|.. ..+..|...|...+..+ .+
T Consensus 52 ~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 52 AQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHH
Confidence 88888888877666667777777555554 678899999988886632 25555655555444433 34
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh----hHHHHhhccCCCCCchhHHHHHHHHHccC---ChhHHHHHHHHh
Q 005969 161 EQIHGLVIKNGFDYELLVANSLVNMYFQCAGI----WSAEKMFKDVEIRDVVSWNTIIGALAESE---NFGKALELYLRM 233 (667)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m 233 (667)
.+.+....+.| +...+..|...|...+.+ +.+..+++.....+...+..+...|...| +.++|++.|++.
T Consensus 129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 44444444444 345666677777777744 44455555555566667777777887788 788888888887
Q ss_pred HhCCcCCChhhHHHHHHHhhcc----CChhHHHHHHHHHHHhcCCCCchHHHHHHHH-H--HhcCChHHHHHHHhc
Q 005969 234 SVDIVFPNQTTFVYVINSCAGL----QNSILGKSIHAKVIKNALECDVFVGSALVDF-Y--AKCDNLEGAHLCFSE 302 (667)
Q Consensus 234 ~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~ 302 (667)
.+.|. ++...+..+-..+... ++.++|...|+... .| +...+..|... + ...++.++|.+.|++
T Consensus 206 a~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 206 VSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 77653 2333222233333222 45666666666654 22 33344444443 2 234455555444443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=1.7e-12 Score=121.71 Aligned_cols=239 Identities=9% Similarity=-0.093 Sum_probs=167.5
Q ss_pred HhhcCChhHHHHHHhcCCCC-------CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 005969 415 YNRTGQYNETVKLLSQLERP-------DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL 487 (667)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 487 (667)
+...|++++|+..++++.+. +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34456666666676665531 34567777888888888888888888888753 34577888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 488 ALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
+.|...++.+.+.. |.+...+..+...|...|++++|...++.+. .|+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888888874 4467788888888888888888888888876 4555544455555566788888888888777
Q ss_pred HcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 005969 566 FLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-----MDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP 639 (667)
Q Consensus 566 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p 639 (667)
... +++...+ .++..+...++.++|...+++.... .|+ ...+..+..++.+.|++++|.+.+++. ...|
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 652 3343333 4667777788888888888776322 221 467788888888888999998888887 3455
Q ss_pred CHHHHHHHHHHHHhcCChhHHhhh
Q 005969 640 NALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 640 ~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+. +.....++...|+.+.|...
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC---
T ss_pred hh--HHHHHHHHHHHHHHHhhHHH
Confidence 32 22334455566676666554
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=1.3e-11 Score=113.19 Aligned_cols=196 Identities=13% Similarity=0.067 Sum_probs=127.2
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNML 513 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 513 (667)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+.+.|...++.+.+.. |.+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHH
Confidence 344556666667777777777777777777642 3356677777777777788888888877777664 3356777777
Q ss_pred HHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (667)
...|...|++++|.+.++++. ..+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 777888888888888777665 2355667777777888888888888888877752 335667777777888888888
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 591 EGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+|...++++... .+.+..++..+..++.+.|++++|.+.+++.
T Consensus 177 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 177 EALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888877544 3344567777888888888888888888776
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=6.2e-11 Score=109.34 Aligned_cols=191 Identities=8% Similarity=-0.084 Sum_probs=146.5
Q ss_pred HHHHHHhhcCChhHHHHHHhcCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 410 IIAGIYNRTGQYNETVKLLSQLE---RPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
.+...+...|++++|.+.|++.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH
Confidence 34444444555555555555543 2355677778888888999999999998888753 3466788888888889999
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFRE 563 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~ 563 (667)
+++|.+.++.+.+.+..|.+...+..+...+...|++++|...++++. .| +...+..+...+...|++++|...+++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998887733334467788888889999999999999998776 23 567888888999999999999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 564 MEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 564 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88752 345667888888899999999999999988544
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=3.3e-11 Score=112.64 Aligned_cols=238 Identities=9% Similarity=-0.084 Sum_probs=187.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcc----hHHHHHHHHH
Q 005969 376 LGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIV----SWNIVIAACA 447 (667)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~li~~~~ 447 (667)
+-.....+...|++++|...++.. ..|.+...+..+..++...|++++|.+.+++..+ ++.. .|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 346677889999999999999998 5666677889999999999999999999988764 3333 3788999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
..|++++|...+++..+.. +.+..++..+...+...|+++.|...+++..+.. |.+...+..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998853 3456789999999999999999999999988773 547778888883444456999999
Q ss_pred HHHHhcC--CC-ChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcC-CCCCH------hHHHHHHHHHhccCCHHHHHH
Q 005969 528 KIFNEMT--DR-NVITWTALISALGLNGF---AQRALEKFREMEFLG-FKPDR------VALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 528 ~~~~~~~--~~-~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g-~~p~~------~~~~~li~~~~~~g~~~~A~~ 594 (667)
+.|+.+. .| +...+..+...+...|+ .++|...+++..+.. -.|+. .+|..+...|...|++++|.+
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999887 34 45677778888888888 888999999987741 12432 478889999999999999999
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHH
Q 005969 595 LFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.+++..+. .+-+......+...
T Consensus 243 ~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHhc--CccHHHHHHHhhhh
Confidence 99999654 23333444444333
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=5.2e-11 Score=107.64 Aligned_cols=168 Identities=9% Similarity=-0.072 Sum_probs=134.0
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKL-CNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
.+...+..+...+...|++++|...++++.+.. +.+..++..+...+... |+++.|...++.+.+.+..|.+...+..
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 345677778888888899999999998887753 44667888888888899 9999999999988873333435678888
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
+...+...|++++|...++++. .| +...+..+...+...|++++|.+.++++.+.....+...+..+...+...|+.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 8899999999999999998776 23 56788888899999999999999999988853114566777788888899999
Q ss_pred HHHHHHHHHhHHh
Q 005969 590 REGMELFERMNRS 602 (667)
Q Consensus 590 ~~A~~~~~~~~~~ 602 (667)
+.|..+++.+...
T Consensus 199 ~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 199 QAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=2e-11 Score=111.89 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=141.4
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC 485 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 485 (667)
..+...+...|++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 3344444445555555555555432 345667777888888999999999999888753 346778888888889999
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
+++.|...++.+.+.. |.+...+..+...+...|++++|...++++. ..+...+..+...+...|++++|++.++
T Consensus 106 ~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp CHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999888875 4467788888899999999999999998876 2356788888899999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 563 EMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 563 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 184 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 184 AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 988852 335778888999999999999999999988554
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=2.6e-10 Score=106.54 Aligned_cols=216 Identities=11% Similarity=-0.023 Sum_probs=115.3
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHH----cC
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAH----NG 450 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g 450 (667)
.+..+...+...|++++|.+.|+....+.+. ..+..+...|.. .+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------------~a~~~lg~~~~~g~~~~~ 56 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKEN-------------------------------SGCFNLGVLYYQGQGVEK 56 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCH-------------------------------HHHHHHHHHHHcCCCcCC
Confidence 3345666667777777777766654222233 344444455555 55
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCC
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSK----LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGS 522 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 522 (667)
++++|...|++..+.+ +...+..+...|.. .++.++|...+++..+.+ ++..+..+...|.. .++
T Consensus 57 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 57 NLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccC
Confidence 5555555555555543 44445555555555 555555555555555543 44455555555555 555
Q ss_pred hHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHH
Q 005969 523 IGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH----GGLVREGM 593 (667)
Q Consensus 523 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 593 (667)
+++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 130 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 130 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5555555555442 233444455555554 555666666666555542 33445555555555 55666666
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHHhh----cCChHHHHHHHHhC
Q 005969 594 ELFERMNRSYGVEPEMDHYHCVVDLLVR----YGHLKEAEKIITTM 635 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 635 (667)
..+++..+. + +...+..+..+|.+ .+++++|.+.+++.
T Consensus 207 ~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 207 ARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 666555332 1 13445555555555 55566666555554
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=2.3e-10 Score=106.96 Aligned_cols=218 Identities=12% Similarity=0.012 Sum_probs=184.5
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchhHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSK----LCNLALGSSLHGLIKKTEIISSDTFVC 510 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 510 (667)
+...+..+...+...|++++|...|++..+. -+...+..+...+.. .++.++|...+++..+.+ ++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 4456777788889999999999999999883 355677788888888 999999999999999886 67888
Q ss_pred hHHHHHHHh----cCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 005969 511 NMLIDMYGK----CGSIGSSVKIFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVALIAVLT 581 (667)
Q Consensus 511 ~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 581 (667)
..+...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 899999999 9999999999998774 467788889999999 999999999999999965 5667788888
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005969 582 ACRH----GGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVR----YGHLKEAEKIITTMPFPPNALIWRTFLEGCQR 653 (667)
Q Consensus 582 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 653 (667)
.|.. .+++++|..++++..+. + +...+..+..+|.. .+++++|.+.+++.....+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8887 99999999999998544 3 45778889999999 99999999999987422347788888888888
Q ss_pred ----cCChhHHhhhhhc
Q 005969 654 ----CRIAKYDTLNSTK 666 (667)
Q Consensus 654 ----~~~~~~a~~~~~~ 666 (667)
.++.+.|....++
T Consensus 231 g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKK 247 (273)
T ss_dssp TSSSSCCSTTHHHHHHH
T ss_pred CCCcccCHHHHHHHHHH
Confidence 8899998876654
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=1.9e-10 Score=111.70 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=172.9
Q ss_pred HHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005969 411 IAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGD-YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCN 486 (667)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 486 (667)
+..++...|++++|++.+++..+ .+...|+.+...+...|+ +++|+..|++..+.. +-+...|..+..++...|+
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccC
Confidence 33344444444444445555442 345667777888888886 889999988888753 3356788888888888899
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh-CCChHHH-----
Q 005969 487 LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGL-NGFAQRA----- 557 (667)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~-~~~~~~A----- 557 (667)
+++|...++++.+.. |.+...|..+..++...|++++|+..++++. .| +...|+.+..++.. .|..++|
T Consensus 182 ~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999999888875 5578888888888889999999999988877 34 56788888888888 5665777
Q ss_pred HHHHHHHHHcCCCCC-HhHHHHHHHHHhccC--CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC---------Ch
Q 005969 558 LEKFREMEFLGFKPD-RVALIAVLTACRHGG--LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG---------HL 625 (667)
Q Consensus 558 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~ 625 (667)
++.+++.+.. .|+ ...|..+...+...| ++++|.+.+.++ + ..+.+...+..++.+|.+.| ..
T Consensus 260 l~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 260 VQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 5888888884 564 668888888888888 688999888877 2 23455677888888888864 25
Q ss_pred HHHHHHHHhC--CCCCC-HHHHHHHHHHHHh
Q 005969 626 KEAEKIITTM--PFPPN-ALIWRTFLEGCQR 653 (667)
Q Consensus 626 ~~A~~~~~~m--~~~p~-~~~~~~l~~~~~~ 653 (667)
++|.++++++ ...|. ...|..+...+..
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8899999998 46665 4566666555443
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=1.9e-10 Score=111.68 Aligned_cols=239 Identities=10% Similarity=0.039 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCC-hhHHHHHHhcCCC---CCcchHHHHHHHHH
Q 005969 374 YVLGSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQ-YNETVKLLSQLER---PDIVSWNIVIAACA 447 (667)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~~~ 447 (667)
..+..+...+.+.|++++|++.++.. ..|.+...+..+..++...|+ +++|+..|++..+ .+...|..+...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34556778888999999999999998 667778888999999999997 9999999998874 45678899999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh-cCChHHH
Q 005969 448 HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK-CGSIGSS 526 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A 526 (667)
..|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...++++.+.. |.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999854 3467789999999999999999999999999986 5578999999999999 6665777
Q ss_pred -----HHHHHhcC--CC-ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccC--------
Q 005969 527 -----VKIFNEMT--DR-NVITWTALISALGLNG--FAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGG-------- 587 (667)
Q Consensus 527 -----~~~~~~~~--~~-~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g-------- 587 (667)
+..+++.. .| +...|..+...+...| +.++|++.++++ + ..| +...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 47777665 44 5678999999999888 689999999988 3 345 4678889999998864
Q ss_pred -CHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHHh
Q 005969 588 -LVREGMELFERMNRSYGVEPEM-DHYHCVVDLLV 620 (667)
Q Consensus 588 -~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 620 (667)
.+++|.++++++ .. .+.|.. ..|..+...+.
T Consensus 332 ~~~~~A~~~~~~l-~~-~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEIL-AK-EKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHH-HH-TTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HH-HhCchhHHHHHHHHHHHH
Confidence 358999999988 22 234443 44555555554
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=1.6e-11 Score=122.64 Aligned_cols=259 Identities=11% Similarity=0.006 Sum_probs=192.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc-CCCC-Cc----chhHHHHHHHhhcCChhHHHHHHhcCCC---------CCcchHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL-NIPR-AV----VPANIIAGIYNRTGQYNETVKLLSQLER---------PDIVSWNI 441 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~ 441 (667)
..+...+...|++++|...|+.. ...| +. ..+..+..++...|++++|...+++..+ .....+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 35667888999999999999887 2222 22 3577788888999999999988877652 22356777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCC-----------------hhhHHHHHHHHHH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVSLLSACSKLCN-----------------LALGSSLHGLIKK 499 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~ 499 (667)
+...|...|++++|...+++..+. +-.| ...++..+...+...|+ ++.|...+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888889999999999999887653 1112 23467778888888999 8888888877654
Q ss_pred h----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 500 T----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 500 ~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
. +..+.....+..+...|...|++++|...+++..+ ++ ...+..+...|...|++++|.+.+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3 21222345778888999999999999999988763 22 23778888999999999999999988776
Q ss_pred cCCC-C----CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 567 LGFK-P----DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 567 ~g~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.... . ...++..+...|...|++++|...+++......-.++ ..++..+..++.+.|++++|.+.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3110 1 1457788888999999999999999987543111111 346788899999999999999998876
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.31 E-value=1.6e-10 Score=108.17 Aligned_cols=212 Identities=10% Similarity=-0.065 Sum_probs=174.1
Q ss_pred HcCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH
Q 005969 448 HNGDYKEVLELFKYMRAARIY--P-DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIG 524 (667)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 524 (667)
..|++++|+..++++.+.... | +..++..+...+...|+++.|...++.+.+.. |.+...+..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 357899999999999886421 1 35678888999999999999999999999885 547889999999999999999
Q ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 525 SSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 525 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
+|...|+++.+ | +...+..+...|...|++++|.+.++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998873 4 6778999999999999999999999999985 56655555556666778999999999988855
Q ss_pred hhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 602 SYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPN-----ALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
. .+++...+ .++..+...++.++|.+.+.+.- ..|+ ..+|..+...+...|+.+.|...+++
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 34444444 47777788888999999998873 3332 57888999999999999999887664
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=2.4e-11 Score=117.69 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=174.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc-CCCC-C----cchhHHHHHHHhhcCChhHHHHHHhcCCC---------CCcchHHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL-NIPR-A----VVPANIIAGIYNRTGQYNETVKLLSQLER---------PDIVSWNIV 442 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~-~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l 442 (667)
.....+...|++++|...+++. ...| + ...+..+...+...|++++|.+.+++..+ .....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 5567788899999999999887 2222 2 24566777788888888888888776542 123456677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC--------------------hhhHHHHHHHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARI-YPD----NYTFVSLLSACSKLCN--------------------LALGSSLHGLI 497 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 497 (667)
...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...++..
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7778888888888888887654310 112 2366677777777888 78887777765
Q ss_pred HHh----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHH
Q 005969 498 KKT----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREM 564 (667)
Q Consensus 498 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~ 564 (667)
.+. +..+.....+..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 433 21121344677777888888888888888877652 12 236677777888888888888888877
Q ss_pred HHcCC-CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 565 EFLGF-KPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 565 ~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+... .++ ..++..+...+...|++++|...+++......-..+ ..++..+..++.+.|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 65210 111 446677777888888888888888876443111111 345677788888888888888887765
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=5.3e-11 Score=118.66 Aligned_cols=284 Identities=8% Similarity=-0.052 Sum_probs=212.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHhc-C-CCCC----cchhHHHHHHHhhcCChhHHHHHHhcCCC---------CCcchH
Q 005969 375 VLGSLMTSYAKSGLISDALAFVTAL-N-IPRA----VVPANIIAGIYNRTGQYNETVKLLSQLER---------PDIVSW 439 (667)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~ 439 (667)
.+......+...|++++|...|+.. . .|.+ ...+..+...+...|++++|...+++... .....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3446677889999999999999987 2 2223 24577788899999999999998887542 123467
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC--------------------hhhHHHHH
Q 005969 440 NIVIAACAHNGDYKEVLELFKYMRAARI-YPD----NYTFVSLLSACSKLCN--------------------LALGSSLH 494 (667)
Q Consensus 440 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 494 (667)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7788889999999999999998765310 012 3477788888999999 99999988
Q ss_pred HHHHHh----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHH
Q 005969 495 GLIKKT----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKF 561 (667)
Q Consensus 495 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~ 561 (667)
+...+. +..+....++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876553 21222345788889999999999999999988762 22 237888899999999999999999
Q ss_pred HHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHH
Q 005969 562 REMEFL----GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 562 ~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 632 (667)
++..+. +-.+. ..++..+...|...|++++|...+++......-.++ ..++..+..++.+.|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998753 11111 457888999999999999999999987544222222 457888999999999999999998
Q ss_pred HhCC-----C--C-CCHHHHHHHHHHHHhcCChh
Q 005969 633 TTMP-----F--P-PNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 633 ~~m~-----~--~-p~~~~~~~l~~~~~~~~~~~ 658 (667)
++.. . . ....++..+...+...|+..
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8762 1 1 22456666777777777653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=3.4e-11 Score=120.34 Aligned_cols=259 Identities=12% Similarity=-0.018 Sum_probs=199.1
Q ss_pred hHHHHHHHhhcCChhHHHHHHhcCCC--CCc-----chHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHH
Q 005969 408 ANIIAGIYNRTGQYNETVKLLSQLER--PDI-----VSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFV 475 (667)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~ 475 (667)
+..+...+...|++++|...|++..+ |+. ..+..+...|...|++++|...+++..+. +-.| ...++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34566788899999999999998763 332 36788888999999999999999987653 1122 345778
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCC-----------------hHHHHHHHHhcC
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGS-----------------IGSSVKIFNEMT 534 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~ 534 (667)
.+...+...|+++.|...++++.+. +..+....++..+...|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 8888899999999999999887665 2122245688889999999999 999998888765
Q ss_pred C-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 535 D-----R----NVITWTALISALGLNGFAQRALEKFREMEFLGFK-PD----RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 535 ~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+ + ....+..+...|...|++++|++.+++..+..-. ++ ..++..+...|...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 2347788889999999999999999998763110 12 2378889999999999999999999875
Q ss_pred HhhCCCC----CcchhHHHHHHHhhcCChHHHHHHHHhCC-C------C-CCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 601 RSYGVEP----EMDHYHCVVDLLVRYGHLKEAEKIITTMP-F------P-PNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 601 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~------~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
....-.. ...++..+..++...|++++|.+.+++.. . . ....++..+...+...|+.+.|...+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4421111 14678889999999999999999998872 1 1 1245778888899999999999877664
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=3.2e-08 Score=102.74 Aligned_cols=462 Identities=11% Similarity=0.032 Sum_probs=234.0
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCC--C-CchhHHHHHHHHHhCCC---hHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPR--K-SLVTWNSIVSIFGKHGF---VEDCMF 127 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~---~~~a~~ 127 (667)
........+++.+..+ +.|...|..++..+.+.+.++.+..+|+.+.. | ....|..-+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555677777777 78999999999999999999999999998864 4 44567777887788888 999999
Q ss_pred HHHHHHHCC-CcCChhhHHHHHHHhcccCc--------hHHHHHHHHHHHH-hcC-CCc-hHHHHHHHHHHHh-------
Q 005969 128 LFCELVRSE-VALTESSFVGVIHGLSNEQD--------LEFGEQIHGLVIK-NGF-DYE-LLVANSLVNMYFQ------- 188 (667)
Q Consensus 128 ~~~~m~~~~-~~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 188 (667)
+|++..... ..|+...|..-+.-..+.++ .+.+.++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999988754 23777776666554433332 2445577777655 355 443 4567666654332
Q ss_pred --cCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHH
Q 005969 189 --CAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHA 266 (667)
Q Consensus 189 --~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 266 (667)
.++++.+.++|++...-....+..+ ..-|...... + +..+-..++.- ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~-------------w~~Y~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESM-------------WQRYTQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHH-------------HHHHHHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHH-------------HHHHHHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHH
Confidence 3345566666666543111111111 1111111100 0 00000000000 0012222333333
Q ss_pred HHHHhc--CC---CCc-hHHHHHHHHHHhcC-ChHHHHHHHhccCCCCcccHHHHHHHHhcCCC-------hH-HHHHHH
Q 005969 267 KVIKNA--LE---CDV-FVGSALVDFYAKCD-NLEGAHLCFSEISNKNIVSWNALILGYASKSS-------PT-SIFLLI 331 (667)
Q Consensus 267 ~~~~~~--~~---~~~-~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~-a~~~~~ 331 (667)
++.... +. |.. .... ....-..+ ...... ..|...+.---..+. .+ ...+++
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql-----------~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL-----------LIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH-----------HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhccccccccch--hccCCCCchhHHHHH-----------HHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 222211 00 000 0000 00000000 000000 111111111000000 00 111222
Q ss_pred HHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHH-HHHHhc--CCCCCcchh
Q 005969 332 ELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDAL-AFVTAL--NIPRAVVPA 408 (667)
Q Consensus 332 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~--~~~~~~~~~ 408 (667)
+..... ...+.+|-.....+...|+.++|. ++|++. ..|.+...+
T Consensus 334 ~aL~~~--------------------------------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 334 QAAQHV--------------------------------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHT--------------------------------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHc--------------------------------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 222110 111222223333444445555553 555444 233333333
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC-------------CC------------cchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER-------------PD------------IVSWNIVIAACAHNGDYKEVLELFKYMR 463 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 463 (667)
...+....+.|++++|.++|+++.. |+ ...|-..+....+.|+.+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444445555555555544431 21 2246666666667788888888888887
Q ss_pred Hc-CCCCCHHHHHHHHHHHhc-cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C---
Q 005969 464 AA-RIYPDNYTFVSLLSACSK-LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R--- 536 (667)
Q Consensus 464 ~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--- 536 (667)
+. + .+....|...+..-.+ .++.+.|..+|+...+. .|.++..+...++.....|+.+.|..+|+.... |
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 65 2 1122233222222222 34578888888887776 243566666777777778888888888887764 2
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 537 -NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 537 -~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|.-
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 2246777777777788888888888888875 5665555556655543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.23 E-value=7.3e-11 Score=117.65 Aligned_cols=261 Identities=11% Similarity=-0.027 Sum_probs=199.3
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC--CC-----cchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER--PD-----IVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYPD-NYT 473 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~ 473 (667)
..+......+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++..+. +-.|. ..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445677788999999999999998763 33 246778888999999999999999986543 22222 456
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhHHHHHHHhcCC--------------------hHHHHHH
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNMLIDMYGKCGS--------------------IGSSVKI 529 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 529 (667)
+..+...+...|+++.|...++...+.....++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 778888899999999999999887765211112 4578888999999999 9999988
Q ss_pred HHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCCHHHHHHH
Q 005969 530 FNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGF-KPD----RVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 530 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
++...+ ++ ..++..+...|...|++++|+..+++..+..- .++ ..++..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 886652 12 34778888999999999999999999876310 122 23788899999999999999999
Q ss_pred HHHhHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHhhh
Q 005969 596 FERMNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPN----ALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 596 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+++......-.++ ..++..+...+...|++++|.+.+++.. ..++ ..++..+...+...|+.+.|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987543211112 4578889999999999999999998772 1122 56778888899999999999877
Q ss_pred hhc
Q 005969 664 STK 666 (667)
Q Consensus 664 ~~~ 666 (667)
+++
T Consensus 330 ~~~ 332 (406)
T 3sf4_A 330 AEK 332 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.22 E-value=8e-10 Score=96.12 Aligned_cols=160 Identities=12% Similarity=0.057 Sum_probs=90.2
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
++..|..+...|...|++++|+..|++..+.. +-+..++..+...+.+.|+++.|...+....... |.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 34456666666666666666666666666542 2244555666666666666666666666665553 22445555555
Q ss_pred HHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~ 590 (667)
..+...++++.|...+.... . .+...+..+...|...|++++|++.|++..+. .| +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 55555566666655555444 1 23445555555555556666666666555553 23 3445555555555556666
Q ss_pred HHHHHHHHh
Q 005969 591 EGMELFERM 599 (667)
Q Consensus 591 ~A~~~~~~~ 599 (667)
+|.+.|++.
T Consensus 159 ~A~~~~~~a 167 (184)
T 3vtx_A 159 EAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555555
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=8.6e-08 Score=99.59 Aligned_cols=214 Identities=11% Similarity=-0.025 Sum_probs=124.8
Q ss_pred CcchHHHHHHHHHHcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhC---------CCC
Q 005969 435 DIVSWNIVIAACAHNGDYKEVL-ELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTE---------IIS 504 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 504 (667)
....|-..+..+...|+.++|. .+|++.... ++.+...+...+...-+.|+++.|..+++.+.+.. ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4445555566666677777775 777777653 33444455556666667777777777777766531 011
Q ss_pred C-----------chhHHhHHHHHHHhcCChHHHHHHHHhcCCC-C---hhhHHHHHHHHHhC-CChHHHHHHHHHHHHcC
Q 005969 505 S-----------DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-N---VITWTALISALGLN-GFAQRALEKFREMEFLG 568 (667)
Q Consensus 505 ~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~g 568 (667)
. ...+|...+....+.|..+.|..+|....+. . ...|-..+..-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1 1235666666666677777777777766532 1 22222222222222 3477777777777765
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC---CcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 005969 569 FKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP---EMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIW 644 (667)
Q Consensus 569 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 644 (667)
++-+...+...+......|+.+.|..+|++.... .++ ....|..++..-.+.|+.+.+.++.+++. ..|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 3334445556666666677777777777776433 111 23456666666667777777777777773 34554444
Q ss_pred HHHHHHHH
Q 005969 645 RTFLEGCQ 652 (667)
Q Consensus 645 ~~l~~~~~ 652 (667)
..+..-|.
T Consensus 578 ~~f~~ry~ 585 (679)
T 4e6h_A 578 EEFTNKYK 585 (679)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 44444443
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=4.1e-10 Score=111.08 Aligned_cols=225 Identities=7% Similarity=-0.033 Sum_probs=173.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-----CchhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-----SDTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 511 (667)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+.+.|...+++..+..... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445667899999999999998764 1112 23578888889999999999999999887652211 1245788
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHhHHH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTD-----RNV----ITWTALISALGLNGFAQRALEKFREMEFL----GFKP-DRVALI 577 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p-~~~~~~ 577 (667)
.+...|...|++++|...+++..+ ++. .++..+...|...|++++|++.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999987762 222 37888999999999999999999998772 3324 356889
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhh---CCCCCcchhHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSY---GVEPEMDHYHCVVDLLVRYGH---LKEAEKIITTMPFPPN-ALIWRTFLEG 650 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~ 650 (667)
.+...|.+.|++++|...+++..... +-+.....+..+...+...|+ .++|.+++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999875432 222222335678888888998 8999999999975544 4566778888
Q ss_pred HHhcCChhHHhhhhhc
Q 005969 651 CQRCRIAKYDTLNSTK 666 (667)
Q Consensus 651 ~~~~~~~~~a~~~~~~ 666 (667)
+...|+.+.|....++
T Consensus 349 y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 349 YHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 9999999999876654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.21 E-value=1.9e-09 Score=93.74 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHH
Q 005969 470 DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALIS 546 (667)
Q Consensus 470 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~ 546 (667)
+...|..+...+.+.|++++|...|++..+.. |.++..+..+...|.+.|++++|...++... . .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 56678888888888999999999999888875 5578888888889999999999988888776 2 35567777778
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 547 ALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 547 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
.+...++++.|.+.+++..+.. +.+...+..+...|.+.|++++|.+.+++..+. -+.+...+..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 8888889999999998888752 334667888888888999999999999888554 3445677888889999999999
Q ss_pred HHHHHHHhC-CCCCCH
Q 005969 627 EAEKIITTM-PFPPNA 641 (667)
Q Consensus 627 ~A~~~~~~m-~~~p~~ 641 (667)
+|.+.|++. ...|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 999988876 345544
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=1.1e-10 Score=112.83 Aligned_cols=258 Identities=11% Similarity=-0.017 Sum_probs=196.4
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCC--CC-----cchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHH
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLER--PD-----IVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVS 476 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ 476 (667)
......+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++..+. +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3456678899999999999998763 33 256778888999999999999999986543 2222 2457778
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhHHHHHHHhcCC--------------------hHHHHHHHHh
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNMLIDMYGKCGS--------------------IGSSVKIFNE 532 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 532 (667)
+...+...|+++.|...+++..+.....++ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 888899999999999999987664221112 4478888899999999 9999988877
Q ss_pred cCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCCHHHHHHHHHH
Q 005969 533 MTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGF-KPD----RVALIAVLTACRHGGLVREGMELFER 598 (667)
Q Consensus 533 ~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (667)
..+ ++ ...+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 642 12 34677888999999999999999999875310 111 23788889999999999999999998
Q ss_pred hHHhhCCCCC----cchhHHHHHHHhhcCChHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 599 MNRSYGVEPE----MDHYHCVVDLLVRYGHLKEAEKIITTMP-F---PP----NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 599 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
......-.++ ..++..+...+...|++++|.+.+++.. . .+ ...++..+...+...|+.+.|....++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7543211122 4567889999999999999999998772 1 11 245778888999999999999887764
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=9.1e-10 Score=111.33 Aligned_cols=209 Identities=12% Similarity=0.000 Sum_probs=155.3
Q ss_pred ChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005969 420 QYNETVKLLSQLER---PDIVSWNIVIAACAHNGDY-KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHG 495 (667)
Q Consensus 420 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 495 (667)
+++++...++.... .+...+..+...+...|++ ++|+..|++..+.. +-+...+..+...|...|++++|.+.++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666655432 3456677777778888888 88888888887753 3346778888888888888888888888
Q ss_pred HHHHhCCCCCchhHHhHHHHHHHhc---------CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhC--------CChH
Q 005969 496 LIKKTEIISSDTFVCNMLIDMYGKC---------GSIGSSVKIFNEMT--DR-NVITWTALISALGLN--------GFAQ 555 (667)
Q Consensus 496 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~--------~~~~ 555 (667)
.+.+.. | +...+..+...|... |++++|...+++.. .| +...|..+..+|... |+++
T Consensus 162 ~al~~~--p-~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--K-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--C-CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--C-CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887764 3 567778888888888 88888888888766 33 566778888888777 7888
Q ss_pred HHHHHHHHHHHcCCCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHH
Q 005969 556 RALEKFREMEFLGFKP----DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI 631 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (667)
+|++.|++..+. .| +...|..+..+|...|++++|.+.|++..+. .+.+...+..+..++...|++++|.+.
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888874 45 5667888888888888888888888887544 233445677788888888888888877
Q ss_pred HHhCC
Q 005969 632 ITTMP 636 (667)
Q Consensus 632 ~~~m~ 636 (667)
+.++.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 76663
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=5.3e-10 Score=113.04 Aligned_cols=206 Identities=14% Similarity=0.064 Sum_probs=174.8
Q ss_pred CHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCCh-hHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHH
Q 005969 388 LISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQY-NETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKY 461 (667)
Q Consensus 388 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 461 (667)
.++++.+.++.. ..+.+...+..+..++...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356666666655 3445667778888889999999 999999988763 3467899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcc---------CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc--------CChH
Q 005969 462 MRAARIYPDNYTFVSLLSACSKL---------CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC--------GSIG 524 (667)
Q Consensus 462 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 524 (667)
..+. .|+...+..+...+... |++++|...++++.+.. |.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 58888899999999999 99999999999999885 55788999999999998 9999
Q ss_pred HHHHHHHhcC--CC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHH
Q 005969 525 SSVKIFNEMT--DR----NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFE 597 (667)
Q Consensus 525 ~A~~~~~~~~--~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 597 (667)
+|...|+... .| +...|..+...|...|++++|++.|++..+. .| +...+..+...+...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999877 34 6778999999999999999999999999985 55 46678889999999999999988765
Q ss_pred Hh
Q 005969 598 RM 599 (667)
Q Consensus 598 ~~ 599 (667)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.8e-10 Score=107.74 Aligned_cols=230 Identities=10% Similarity=-0.008 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh------CCC
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAA-------RIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT------EII 503 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 503 (667)
.++..+...+...|++++|..+++++.+. ..+....++..+...+...|+++.|...++.+.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566667777777777777777776652 12223456666777777778888887777776654 222
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R----NVITWTALISALGLNGFAQRALEKFREMEFL----- 567 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----- 567 (667)
+.....+..+...|...|++++|...++++.+ + ....+..+...+...|++++|+++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 32456677777777788888888777776552 1 2235666777788888888888888877663
Q ss_pred -CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh------CCCCCcchh-------HHHHHHHhhcCChHHHHHHH
Q 005969 568 -GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSY------GVEPEMDHY-------HCVVDLLVRYGHLKEAEKII 632 (667)
Q Consensus 568 -g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~ 632 (667)
+..|+ ..++..+...|...|++++|...++++.... ...+..... ..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 22332 3467777778888888888888888775421 111222111 11222222333444444455
Q ss_pred HhCC-C-CCCHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 633 TTMP-F-PPNALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 633 ~~m~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
.+.. . .....++..+...+...|+.+.|....++
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5443 2 22356667777777777887777766554
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=3.9e-09 Score=100.30 Aligned_cols=207 Identities=11% Similarity=0.027 Sum_probs=96.5
Q ss_pred HHHHHHHHhc--CCCCCcchhHHHHHHHhh-------cCCh-------hHHHHHHhcCCC---C-CcchHHHHHHHHHHc
Q 005969 390 SDALAFVTAL--NIPRAVVPANIIAGIYNR-------TGQY-------NETVKLLSQLER---P-DIVSWNIVIAACAHN 449 (667)
Q Consensus 390 ~~a~~~~~~~--~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~~ 449 (667)
++|...|++. ..|.+...+..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666666655 344444455444444432 3443 555555554432 2 222444555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH-hcCChHHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDN-Y-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG-KCGSIGSS 526 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 526 (667)
|++++|..+|++..+ +.|+. . .|..+...+.+.|+.+.|..+|++..+.. |++...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555554 23321 1 44555555555555555555555555432 222333322222211 13555555
Q ss_pred HHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 527 VKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLG-FKPD--RVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 527 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
..+|+...+ | +...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554431 2 33444455555555555555555555555531 2332 2344444555555555555555555553
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=1.3e-08 Score=96.69 Aligned_cols=209 Identities=13% Similarity=0.060 Sum_probs=162.0
Q ss_pred hHHHHHHhcCCC---CCcchHHHHHHHHH-------HcCCh-------hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 005969 422 NETVKLLSQLER---PDIVSWNIVIAACA-------HNGDY-------KEVLELFKYMRAARIYP-DNYTFVSLLSACSK 483 (667)
Q Consensus 422 ~~a~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 483 (667)
++|...|++... .++..|..++..+. ..|++ ++|..+|++..+. +.| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 456667776653 45567777776665 35886 8999999999873 245 45688889999999
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchh-HHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHH-HhCCChHHHH
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTF-VCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISAL-GLNGFAQRAL 558 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~-~~~~~~~~A~ 558 (667)
.|+++.|..+|+++.+.. |.+.. .|..++..+.+.|++++|..+|++..+ | +...|....... ...|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999853 43454 899999999999999999999998874 3 333443333222 2369999999
Q ss_pred HHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 559 EKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 559 ~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+|++..+. .| +...|..++..+.+.|++++|..+|++......++|+ ...|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999885 44 5678889999999999999999999999654234553 457888899999999999999999887
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=7e-09 Score=101.95 Aligned_cols=297 Identities=8% Similarity=-0.023 Sum_probs=201.7
Q ss_pred cchhhhHHHHHHHH--HhhCCHHHHHHHHHhc-------CCCCCcchhHHHHHH--HhhcCChhHHH---------HHHh
Q 005969 370 ENYEYVLGSLMTSY--AKSGLISDALAFVTAL-------NIPRAVVPANIIAGI--YNRTGQYNETV---------KLLS 429 (667)
Q Consensus 370 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 429 (667)
.|+..+-+.+-..| ...+++++|.++++++ ....+...|-.++.. ....+..+... +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44555555666666 7899999999999876 111222222222221 11111111111 3444
Q ss_pred cCC---CCCcc-----hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChhhHHHHHHH
Q 005969 430 QLE---RPDIV-----SWNIVIAACAHNGDYKEVLELFKYMRAARI-YPD----NYTFVSLLSACSKLCNLALGSSLHGL 496 (667)
Q Consensus 430 ~~~---~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 496 (667)
.+. .+... .+......+...|++++|...+++..+.-. .++ ..++..+...|...|+.+.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 11111 122334456789999999999999876421 122 34777888889999999999999998
Q ss_pred HHHhCCCC-----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHH
Q 005969 497 IKKTEIIS-----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFR 562 (667)
Q Consensus 497 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~ 562 (667)
..+..... ....+++.+...|...|++++|...+++..+ ++ ..++..+...|...|++++|++.++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77642211 1355778899999999999999999987663 22 2467888999999999999999999
Q ss_pred HHHHc----CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---cchhHHHHHHHhhcCC---hHHHHHHH
Q 005969 563 EMEFL----GFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE---MDHYHCVVDLLVRYGH---LKEAEKII 632 (667)
Q Consensus 563 ~~~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~ 632 (667)
+..+. +.+....++..+...|.+.|++++|...+++......-.++ ...+..+...+...|+ ..+|.+.+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 98771 22223668888999999999999999999998654322222 2345566667777788 89999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 633 TTMPFPPN-ALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 633 ~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
++....|+ ...+..+...+...|+.+.|....++
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99864444 45666788889999999999876654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=2.2e-08 Score=98.57 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=120.9
Q ss_pred HHHHHHhcCChHHHHHHHhccCC-----CC----cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCC-CC-HhhHHHHHH
Q 005969 283 LVDFYAKCDNLEGAHLCFSEISN-----KN----IVSWNALILGYASKSSPT-SIFLLIELLQLGYR-PN-EFTFSHVLR 350 (667)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~-~~-~~~~~~~l~ 350 (667)
....+...|++++|.+.|++..+ ++ ...+..+...|...|+.+ |+..+.+..+.... ++ ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR------ 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH------
Confidence 44556778888888888877644 22 245666777777888888 88877765542111 11 000
Q ss_pred HhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhc
Q 005969 351 SSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQ 430 (667)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (667)
...+++.+...|...|++++|.+.+++ |.++...
T Consensus 183 ---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------al~~~~~ 216 (383)
T 3ulq_A 183 ---------------------LLQCHSLFATNFLDLKQYEDAISHFQK-------------------------AYSMAEA 216 (383)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------------HHHHHHH
Confidence 012234566677777777777775543 2222222
Q ss_pred CCCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 005969 431 LERP--DIVSWNIVIAACAHNGDYKEVLELFKYMRAA----RI-YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEII 503 (667)
Q Consensus 431 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 503 (667)
...+ ...++..+...|...|++++|...+++..+. +. +....++..+...+.+.|+.+.|...+++..+....
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 2110 1124555666666666666666666665441 22 122344555555555566666665555554433110
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 005969 504 SSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGF---AQRALEKFREMEFLGFKPD-RVALIAV 579 (667)
Q Consensus 504 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 579 (667)
..++.. ...+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 297 ~~~~~~----------------------------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 297 AGDVIY----------------------------LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HTCHHH----------------------------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred cCCHHH----------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 001100 1123334445555555 44444444443 22222 2345556
Q ss_pred HHHHhccCCHHHHHHHHHHhH
Q 005969 580 LTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~ 600 (667)
...|...|++++|...+++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666653
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=2.5e-10 Score=109.03 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=132.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC----CCCcchHHHHHHHHHH
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE----RPDIVSWNIVIAACAH 448 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 448 (667)
..++..+...+...|++++|..++++. .++..... ......+..+...|..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQA-------------------------LEDLEKTSGHDHPDVATMLNILALVYRD 81 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------HHHHHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 344557778888888888888877653 11211111 1122345556666666
Q ss_pred cCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHh------CCCCCchhHHhHHHH
Q 005969 449 NGDYKEVLELFKYMRAA------RIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKT------EIISSDTFVCNMLID 515 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~ 515 (667)
.|++++|...+++..+. +-.| ...++..+...+...|+++.|...++++.+. +..+.....+..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777666543 1122 2345666667777777777777777766654 222324556667777
Q ss_pred HHHhcCChHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCC------
Q 005969 516 MYGKCGSIGSSVKIFNEMTD-------R----NVITWTALISALGLNGFAQRALEKFREMEFL-------GFKP------ 571 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------g~~p------ 571 (667)
.|...|++++|...++++.+ + ...++..+...|...|++++|.+.++++.+. ...+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 77777777777777766542 1 1235666677777777777777777776652 1111
Q ss_pred -CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 572 -DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 572 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
....+..+...+...+.+.+|...+...... .+....++..+..+|.+.|++++|.+.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1123333444455566666666666666322 2334456777777777777777777777654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=6.2e-09 Score=90.45 Aligned_cols=160 Identities=18% Similarity=0.094 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 4444555556666666666666655432 2345556666666666666666666666666553 335566666666666
Q ss_pred hcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMEL 595 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (667)
..|++++|.+.++.+. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777666654 2345566677777777788888888888777752 33456777777788888888888888
Q ss_pred HHHhHHh
Q 005969 596 FERMNRS 602 (667)
Q Consensus 596 ~~~~~~~ 602 (667)
+++....
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8777443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=2.1e-07 Score=91.18 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=134.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCC----CcchHHHHHHHHHHcCChh
Q 005969 378 SLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERP----DIVSWNIVIAACAHNGDYK 453 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 453 (667)
.+...+...|++++|.+.+++ +.++......+ ....+..+...+...|+++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~-------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEK-------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH-------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 455667777888887775553 22233332222 1234555677788889999
Q ss_pred HHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh-----HHHHHHHhcCChH
Q 005969 454 EVLELFKYMRAARIY--P--DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN-----MLIDMYGKCGSIG 524 (667)
Q Consensus 454 ~A~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~ 524 (667)
+|...+++..+..-. + ...++..+...+...|++++|...++........+.....+. ..+..+...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 999999887654321 1 234677777888889999999999998876532221211221 2334577899999
Q ss_pred HHHHHHHhcCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCH-hHHHHHHHHHhccCCHHHH
Q 005969 525 SSVKIFNEMTDRNV-------ITWTALISALGLNGFAQRALEKFREMEFL----GFKPDR-VALIAVLTACRHGGLVREG 592 (667)
Q Consensus 525 ~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~~-~~~~~li~~~~~~g~~~~A 592 (667)
+|...++...+++. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|++++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 99999998875321 24567778889999999999999887653 222222 2666777888899999999
Q ss_pred HHHHHHhHH
Q 005969 593 MELFERMNR 601 (667)
Q Consensus 593 ~~~~~~~~~ 601 (667)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988744
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.00 E-value=1.7e-08 Score=87.63 Aligned_cols=159 Identities=13% Similarity=-0.014 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHH
Q 005969 472 YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISAL 548 (667)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~ 548 (667)
..+..+...+...|+++.|...++.+.+.. |.+...+..+...+...|++++|...++.+. . .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 355566667777788888888777766543 3356777777777778888888888777665 2 3456677777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHH
Q 005969 549 GLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEA 628 (667)
Q Consensus 549 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (667)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 77788888888887777652 335667777777777788888888888777544 234456677777777788888888
Q ss_pred HHHHHhC
Q 005969 629 EKIITTM 635 (667)
Q Consensus 629 ~~~~~~m 635 (667)
.+.+++.
T Consensus 164 ~~~~~~~ 170 (186)
T 3as5_A 164 LPHFKKA 170 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=1.4e-08 Score=106.85 Aligned_cols=160 Identities=13% Similarity=0.062 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
...|+.+...|.+.|++++|+..|++..+. .| +..++..+..++.+.|++++|.+.+++..+.. |.+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 356778888888889999999999888874 45 46688888888899999999999999888875 54688888999
Q ss_pred HHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVR 590 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~ 590 (667)
..|...|++++|.+.|++.. +| +...|+.+...|...|++++|++.|++..+. .|+ ...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998776 34 5678888999999999999999999998884 665 668888999999999999
Q ss_pred HHHHHHHHhHH
Q 005969 591 EGMELFERMNR 601 (667)
Q Consensus 591 ~A~~~~~~~~~ 601 (667)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887643
No 80
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=2.3e-08 Score=91.72 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=165.9
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELF 459 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 459 (667)
++-..-.|++..++.-...+.............+++...|+++... ...|....+..+.. |...+ |+..|
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~-~~~~~----a~~~l 89 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQ-FLDTK----NIEEL 89 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHH-HHTTT----CCHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHH-Hhccc----HHHHH
Confidence 3455567888888875555433333334445567788888776421 11233223333333 33322 77888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-
Q 005969 460 KYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR- 536 (667)
Q Consensus 460 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~- 536 (667)
++..+.+ .++..++..+..++...|+.++|++++......+..+.+...+..++..+.+.|+.+.|.+.++.|. .|
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 8877665 5666677788888999999999999999886665322367888889999999999999999999887 35
Q ss_pred ----ChhhHHHHHHH--HHhCC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh-C---
Q 005969 537 ----NVITWTALISA--LGLNG--FAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSY-G--- 604 (667)
Q Consensus 537 ----~~~~~~~li~~--~~~~~--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~--- 604 (667)
+..+...|..+ ....| +..+|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.+.+ .
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 23455555555 33333 899999999998774 5653444445558889999999999999774432 1
Q ss_pred ----CCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH
Q 005969 605 ----VEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNAL 642 (667)
Q Consensus 605 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~ 642 (667)
-+.++.++..++.+....|+ +|.++++++. ..|+..
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 14466677666666666776 7888888884 455543
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.97 E-value=8e-08 Score=94.22 Aligned_cols=280 Identities=11% Similarity=0.059 Sum_probs=196.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhc--CCCCCcc-----hhHHHHHHHhhcCChhHHHHHHhcCCC-----CCc----chHHH
Q 005969 378 SLMTSYAKSGLISDALAFVTAL--NIPRAVV-----PANIIAGIYNRTGQYNETVKLLSQLER-----PDI----VSWNI 441 (667)
Q Consensus 378 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~ 441 (667)
.....+...|++++|...+++. ..+.+.. .+..+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3445667889999999999886 2232221 345666778889999999999887652 222 23556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--C-chhHHh
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAA----RIY--PD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS--S-DTFVCN 511 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~ 511 (667)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|+++.|...++...+..... + ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999999987653 222 32 3456667788899999999999999988764321 1 235677
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC----CCCh-hhHH-----HHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHHH
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMT----DRNV-ITWT-----ALISALGLNGFAQRALEKFREMEFLGFKPD---RVALIA 578 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~ 578 (667)
.+...+...|++++|...+++.. +++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 88889999999999999998764 2222 2222 233447789999999999998876432211 225677
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh---hCCCCCc-chhHHHHHHHhhcCChHHHHHHHHhCC-----------CCCCHHH
Q 005969 579 VLTACRHGGLVREGMELFERMNRS---YGVEPEM-DHYHCVVDLLVRYGHLKEAEKIITTMP-----------FPPNALI 643 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~-----------~~p~~~~ 643 (667)
+...+...|++++|...+++.... .+..++. ..+..+..++...|+.++|.+.+++.. +......
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~ 338 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 338 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHH
Confidence 888899999999999999987443 1222222 366677888899999999999887751 1122234
Q ss_pred HHHHHHHHHhcCCh
Q 005969 644 WRTFLEGCQRCRIA 657 (667)
Q Consensus 644 ~~~l~~~~~~~~~~ 657 (667)
...++..+.....+
T Consensus 339 ~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 339 MAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCC
Confidence 55667777777665
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=5e-08 Score=88.03 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=128.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 435 DIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...++...+.. |.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 3455666677777788888888888887776533666666667777778888888888888877764 44667777788
Q ss_pred HHHHhcCChHHHHHHHHhcC--CC-Ch-------hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhHHHHHHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DR-NV-------ITWTALISALGLNGFAQRALEKFREMEFLGFKPD---RVALIAVLT 581 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~-~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~li~ 581 (667)
..|...|++++|...+++.. .| +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 88888888888888887766 23 23 34666777778888888888888888774 565 346666666
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 005969 582 ACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIW 644 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 644 (667)
+|...| ..+++++... + ..+...|.... ....+.+++|.+.+++.. ..|+....
T Consensus 162 ~~~~~~-----~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHH-----HHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHH-----HHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 665544 3334444221 1 12223333322 234556778888877772 45544333
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.95 E-value=1.9e-08 Score=105.82 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=142.1
Q ss_pred CCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHH
Q 005969 468 YPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTA 543 (667)
Q Consensus 468 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ 543 (667)
.|+ ..+|+.+...+.+.|++++|.+.+++..+.. |.+...+..+..+|.+.|++++|...|++.. +| +...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344 4689999999999999999999999999885 5578999999999999999999999999877 45 5679999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
+...|...|++++|++.|++..+. .|+ ...|..+..+|...|++++|++.|++..+. -+-+...+..+..++...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 999999999999999999999985 664 679999999999999999999999998655 233467889999999999
Q ss_pred CChHHHHHHHHhC
Q 005969 623 GHLKEAEKIITTM 635 (667)
Q Consensus 623 g~~~~A~~~~~~m 635 (667)
|++++|.+.+++.
T Consensus 159 g~~~~A~~~~~ka 171 (723)
T 4gyw_A 159 CDWTDYDERMKKL 171 (723)
T ss_dssp TCCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 9999999888765
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=1.1e-07 Score=93.28 Aligned_cols=165 Identities=12% Similarity=0.023 Sum_probs=86.9
Q ss_pred HHHHHhcCChHHHHHHHhccCC-----CC----cccHHHHHHHHhcCCChH-HHHHHHHHHHcCCC-CC-HhhHHHHHHH
Q 005969 284 VDFYAKCDNLEGAHLCFSEISN-----KN----IVSWNALILGYASKSSPT-SIFLLIELLQLGYR-PN-EFTFSHVLRS 351 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~-~~-~~~~~~~l~~ 351 (667)
...+...|++++|...|++..+ ++ ...+..+...|...|+.+ |...+.+..+.... ++ ...
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~------- 180 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR------- 180 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH-------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh-------
Confidence 3445667777777777766543 22 234556666777778877 77777765442110 11 000
Q ss_pred hhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcC
Q 005969 352 SLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQL 431 (667)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (667)
...+++.+...|...|++++|.+.+++ |.++.+..
T Consensus 181 --------------------~~~~~~~lg~~y~~~~~~~~A~~~~~~-------------------------al~~~~~~ 215 (378)
T 3q15_A 181 --------------------TIQSLFVIAGNYDDFKHYDKALPHLEA-------------------------ALELAMDI 215 (378)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHHT
T ss_pred --------------------HHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------------HHHHHHHc
Confidence 112234566677777777777775543 22222222
Q ss_pred CCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 432 ERP--DIVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 432 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
..+ ...++..+...|...|++++|...+++..+. +.+....++..+...+.+.|+.+.|...+++..+.
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111 1234455556666666666666666665441 11112344555555555555555555555555543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=7.7e-09 Score=96.95 Aligned_cols=196 Identities=10% Similarity=-0.012 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHh------CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C-
Q 005969 471 NYTFVSLLSACSKLCNLALGSSLHGLIKKT------EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R- 536 (667)
Q Consensus 471 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 536 (667)
..++..+...+...|+++.|...++.+.+. +..+....++..+...|...|++++|...+++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555566666666666666666655544 22222345566666666666666666666665441 1
Q ss_pred ---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---
Q 005969 537 ---NVITWTALISALGLNGFAQRALEKFREMEFL------GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSY--- 603 (667)
Q Consensus 537 ---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 603 (667)
....+..+...|...|++++|++.+++..+. +-.|+ ..++..+...|...|++++|..++++.....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1235666667777777777777777776653 11222 3466677777777777777777777664321
Q ss_pred ---CCCCCc-chhHHHHHHHhhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHhhhhhc
Q 005969 604 ---GVEPEM-DHYHCVVDLLVRYG------HLKEAEKIITTMP-FPP-NALIWRTFLEGCQRCRIAKYDTLNSTK 666 (667)
Q Consensus 604 ---~~~~~~-~~~~~l~~~~~~~g------~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 666 (667)
...+.. ..+..+.......+ .+.++...++... ..| ...++..+...+...|+.+.|....++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112222 22222222222222 2333444444443 112 245566667777777777777666554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=1.1e-08 Score=95.85 Aligned_cols=198 Identities=15% Similarity=0.054 Sum_probs=133.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHh------CC
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAA------RIYP-DNYTFVSLLSACSKLCNLALGSSLHGLIKKT------EI 502 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 502 (667)
..++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...++++.+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777888888899999999888887654 2223 3457888888889999999999988887765 11
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----
Q 005969 503 ISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-------R----NVITWTALISALGLNGFAQRALEKFREMEFL---- 567 (667)
Q Consensus 503 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 567 (667)
.|.....+..+...|...|++++|...+++..+ + ...++..+...|...|++++|.+.+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 233567788888899999999999988887652 1 2346778888899999999999999888763
Q ss_pred ---CCCCCH-hHHHHHHHHHhccCCHHH------HHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 568 ---GFKPDR-VALIAVLTACRHGGLVRE------GMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 568 ---g~~p~~-~~~~~li~~~~~~g~~~~------A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...+.. ..+..+...+...+.... +...++.. .. ..+....++..+..+|.+.|++++|.+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC-KV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC-CC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123332 234444434433333322 22222222 01 11223456788899999999999999988764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=1.3e-07 Score=88.96 Aligned_cols=195 Identities=7% Similarity=-0.049 Sum_probs=140.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhHH
Q 005969 443 IAACAHNGDYKEVLELFKYMRAA----RIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNML 513 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 513 (667)
...|...|++++|...|.+..+. |-+++ ..+|..+...|...|++++|...+++..+......+ ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677888888888888876543 32222 457888888899999999999988887765311111 4578888
Q ss_pred HHHHHhc-CChHHHHHHHHhcCC--C---C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------hHHH
Q 005969 514 IDMYGKC-GSIGSSVKIFNEMTD--R---N----VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR------VALI 577 (667)
Q Consensus 514 ~~~~~~~-~~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~------~~~~ 577 (667)
...|... |++++|...|++..+ | + ..++..+...+...|++++|+..|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 999999999988763 1 1 346888899999999999999999999985322221 1567
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc------hhHHHHHHHh--hcCChHHHHHHHHhCC-CCCC
Q 005969 578 AVLTACRHGGLVREGMELFERMNRSYGVEPEMD------HYHCVVDLLV--RYGHLKEAEKIITTMP-FPPN 640 (667)
Q Consensus 578 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~-~~p~ 640 (667)
.+..++...|++++|...+++... +.|+.. .+..++.++. ..+++++|.+.|+++. ..|.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 788889999999999999998743 334321 2444566664 4567999999998874 4443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=6.8e-08 Score=90.78 Aligned_cols=197 Identities=8% Similarity=-0.028 Sum_probs=143.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCChHHH
Q 005969 451 DYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
++++|...|.+. ...|...|++++|...+.+..+. +..+....+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577889999999999887664 21111256889999999999999999
Q ss_pred HHHHHhcCC-----CC----hhhHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-------HhHHHHHHHHHhccCCH
Q 005969 527 VKIFNEMTD-----RN----VITWTALISALGLN-GFAQRALEKFREMEFLGFKPD-------RVALIAVLTACRHGGLV 589 (667)
Q Consensus 527 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~g~~p~-------~~~~~~li~~~~~~g~~ 589 (667)
...++...+ .+ ..+++.+...|... |++++|+..|++..+. .|+ ..++..+...+.+.|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999987763 12 35788899999996 9999999999998873 221 34788899999999999
Q ss_pred HHHHHHHHHhHHhhCCCCCcc-----hhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHH--hcC
Q 005969 590 REGMELFERMNRSYGVEPEMD-----HYHCVVDLLVRYGHLKEAEKIITTMP-FPPNAL------IWRTFLEGCQ--RCR 655 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~------~~~~l~~~~~--~~~ 655 (667)
++|...+++......-.+... .|..+..++...|++++|.+.+++.. +.|+.. .+..++.++. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999999865421122211 46778888999999999999999983 455422 3444555554 224
Q ss_pred ChhHHhhhh
Q 005969 656 IAKYDTLNS 664 (667)
Q Consensus 656 ~~~~a~~~~ 664 (667)
+++.|....
T Consensus 255 ~~~~A~~~~ 263 (292)
T 1qqe_A 255 QLSEHCKEF 263 (292)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555444
No 89
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=6.9e-08 Score=87.08 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHH
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALI 545 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li 545 (667)
.|+..+......+...|++++|...++...+.... ++...+..+...+...|++++|...++... .| +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45677777888888999999999999998887632 467777778889999999999999998876 34 445788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-H-------hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---cchhHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKPD-R-------VALIAVLTACRHGGLVREGMELFERMNRSYGVEPE---MDHYHC 614 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 614 (667)
..|...|++++|++.+++..+. .|+ . ..|..+...+...|++++|.+.+++..+ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8999999999999999998885 443 4 4577778888889999999999988743 3444 466777
Q ss_pred HHHHHhhcCC
Q 005969 615 VVDLLVRYGH 624 (667)
Q Consensus 615 l~~~~~~~g~ 624 (667)
+..++...|+
T Consensus 159 l~~~~~~~~~ 168 (228)
T 4i17_A 159 LGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.77 E-value=1.6e-07 Score=76.35 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=65.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHh
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGL 550 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 550 (667)
+..+...+...|+++.|..+++.+.+.. |.+...+..+...+...|++++|...++++. ..+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4445555556666666666666655543 2244555555555555555555555555543 1233445555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 551 NGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 555555555555555431 223444555555555555555555555554
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.76 E-value=3.4e-07 Score=74.32 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+ |.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677788888999999999999988754 3466778888888888999999999999988875 44677888888999
Q ss_pred HhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 518 GKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
...|++++|.+.++.+.+ .+...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999988762 35677888899999999999999999998874
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.74 E-value=4e-07 Score=85.10 Aligned_cols=163 Identities=8% Similarity=-0.021 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHH-
Q 005969 468 YPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNVITWTAL- 544 (667)
Q Consensus 468 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l- 544 (667)
+.+...+..+...+.+.|+.+.|...++.+.+.. |.+...+..+...+...|++++|...++.+.. |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3445567777778889999999999999998875 55788899999999999999999999999874 554433222
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcC
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYG 623 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (667)
...+...++.++|+..+++.... .| +...+..+...+...|++++|...++++.+...-..+...+..++.++...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23366777888899999998885 45 5678889999999999999999999999766222223567889999999999
Q ss_pred ChHHHHHHHHh
Q 005969 624 HLKEAEKIITT 634 (667)
Q Consensus 624 ~~~~A~~~~~~ 634 (667)
+.++|...+.+
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 99998887764
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.70 E-value=5.4e-07 Score=83.15 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-CchhHHhHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPD----NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS-SDTFVCNML 513 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l 513 (667)
+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|+++.|...++.+.+..... .....+..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344444555555555555555554432 21 3344445555555555555555555555543211 112334444
Q ss_pred HHHHHh--------cCChHHHHHHHHhcC--CCCh-hh-----------------HHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 514 IDMYGK--------CGSIGSSVKIFNEMT--DRNV-IT-----------------WTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 514 ~~~~~~--------~~~~~~A~~~~~~~~--~~~~-~~-----------------~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
...+.. .|++++|...|+++. .|+. .. +..+...|...|++++|+..|+++.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444444 455555555555443 1211 11 2344566666677777777777666
Q ss_pred HcCCCCC----HhHHHHHHHHHhcc----------CCHHHHHHHHHHhHHh
Q 005969 566 FLGFKPD----RVALIAVLTACRHG----------GLVREGMELFERMNRS 602 (667)
Q Consensus 566 ~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 602 (667)
+. .|+ ...+..+..+|... |++++|...++++.+.
T Consensus 176 ~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 176 DA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 63 333 23455555556544 6666666666666444
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.69 E-value=2.2e-07 Score=85.74 Aligned_cols=188 Identities=9% Similarity=0.005 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc---hhHHhHHHHHHHhcCChHHHHHHHHhcCC--CC----hh
Q 005969 469 PDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD---TFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RN----VI 539 (667)
Q Consensus 469 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~ 539 (667)
.+...+-.+...+.+.|++++|...|+.+.+.. |.+ ...+..+...|.+.|++++|...|+...+ |+ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 355667777788899999999999999998875 323 67888899999999999999999998873 42 23
Q ss_pred hHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCH-hHH-----------------HHHHHHHhccCCHHHHH
Q 005969 540 TWTALISALGL--------NGFAQRALEKFREMEFLGFKPDR-VAL-----------------IAVLTACRHGGLVREGM 593 (667)
Q Consensus 540 ~~~~li~~~~~--------~~~~~~A~~~~~~~~~~g~~p~~-~~~-----------------~~li~~~~~~g~~~~A~ 593 (667)
.+..+..++.. .|++++|+..|+++.+. .|+. ... ..+...|.+.|++++|.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 56677888888 99999999999999985 4542 333 55688899999999999
Q ss_pred HHHHHhHHhhCCCC-CcchhHHHHHHHhhc----------CChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCh
Q 005969 594 ELFERMNRSYGVEP-EMDHYHCVVDLLVRY----------GHLKEAEKIITTMP-FPPNA----LIWRTFLEGCQRCRIA 657 (667)
Q Consensus 594 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~-~~p~~----~~~~~l~~~~~~~~~~ 657 (667)
..|+++.+...-.+ ....+..+..+|... |++++|.+.++++. ..|+. .....+-......++.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999966522111 234677788888766 88999999998883 34443 2333333444444444
Q ss_pred hHH
Q 005969 658 KYD 660 (667)
Q Consensus 658 ~~a 660 (667)
+.+
T Consensus 249 ~~~ 251 (261)
T 3qky_A 249 EGD 251 (261)
T ss_dssp HTC
T ss_pred hhh
Confidence 443
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=4.2e-07 Score=77.91 Aligned_cols=156 Identities=10% Similarity=0.006 Sum_probs=101.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHH-HHhC
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RNVITWTALISA-LGLN 551 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 551 (667)
..+...+.+.|+++.|...++...+.. |.+...+..+...+...|++++|...++...+ |+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 344455666777777777777666553 44667777777888888888888888887763 433222222111 1122
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHH
Q 005969 552 GFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEK 630 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (667)
+...+|+..+++..+. .| +...+..+...+...|++++|...++++.+...-..+...+..+..++...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2334567788887774 55 46677888888888888888888888774431111224567788888888888888887
Q ss_pred HHHh
Q 005969 631 IITT 634 (667)
Q Consensus 631 ~~~~ 634 (667)
.+.+
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=5.5e-07 Score=79.62 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=104.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC 520 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 520 (667)
....+...|++++|+..|++..+. .|+.. .+.. . . .... ....+.....+...|.+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~---~~~~---------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-N---VDKN---------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-H---SCTT---------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-h---hcch---------------hhhhHHHHHHHHHHHHHC
Confidence 344556777888888888777763 34432 2222 0 0 0000 000122233467777777
Q ss_pred CChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCH--HHHHH
Q 005969 521 GSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLV--REGME 594 (667)
Q Consensus 521 ~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~--~~A~~ 594 (667)
|++++|...|++.. .| +...+..+...+...|++++|+..|++..+. .| +..++..+...|...|.. ..+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888877777765 33 5567777777788888888888888887774 45 355777777776555432 33444
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005969 595 LFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWRTFLE 649 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 649 (667)
.++... ...|....+.....++...|++++|.+.|++. ...|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444331 11222223344555666677888888888776 46777665555443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.7e-06 Score=76.55 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=115.4
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----ChhhHHHHHHHHHHhCCCCCchhH
Q 005969 434 PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC----NLALGSSLHGLIKKTEIISSDTFV 509 (667)
Q Consensus 434 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 509 (667)
.++..+..+...|...+++++|..+|++..+.| +...+..+-..|.. + +.++|.+.+++..+.+ ++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 566667777777778888888888888887765 45666666666766 5 7888888888887765 5667
Q ss_pred HhHHHHHHHh----cCChHHHHHHHHhcCCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHH
Q 005969 510 CNMLIDMYGK----CGSIGSSVKIFNEMTDRN-----VITWTALISALGL----NGFAQRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 510 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
+..|...|.. .+++++|...|+...+.+ ...+..|...|.. .++.++|+++|++..+. ..+...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHH
Confidence 7777777776 778888888888777432 5677777777777 67788888888888775 2344566
Q ss_pred HHHHHHHhcc-C-----CHHHHHHHHHHhHHh
Q 005969 577 IAVLTACRHG-G-----LVREGMELFERMNRS 602 (667)
Q Consensus 577 ~~li~~~~~~-g-----~~~~A~~~~~~~~~~ 602 (667)
..|...|... | ++++|..+++...+.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6666666542 2 788888888877433
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.64 E-value=4.5e-07 Score=83.15 Aligned_cols=175 Identities=9% Similarity=-0.020 Sum_probs=95.7
Q ss_pred HHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCChhHHHHhhccCC
Q 005969 125 CMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGF-DYELLVANSLVNMYFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 125 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (667)
|++.|++..+.+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666544 44555555666777777777777777777655443 2355566666677777777777777776664
Q ss_pred CCC-------chhHHHHHHH--HHc--cCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 005969 204 IRD-------VVSWNTIIGA--LAE--SENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNA 272 (667)
Q Consensus 204 ~~~-------~~~~~~li~~--~~~--~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 272 (667)
+.+ ..+...+..+ ... .+++.+|..+|+++.+. .|+..+-..++.++...|++++|+..++.+.+.-
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 321 2233333333 222 23677777777776554 3442333333445666666666666666544331
Q ss_pred ---------CCCCchHHHHHHHHHHhcCChHHHHHHHhccC
Q 005969 273 ---------LECDVFVGSALVDFYAKCDNLEGAHLCFSEIS 304 (667)
Q Consensus 273 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (667)
-+.+..+...+|......|+ +|.+++.++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 12244444344444444454 4455544443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=5.6e-07 Score=95.29 Aligned_cols=181 Identities=11% Similarity=0.011 Sum_probs=118.6
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 447 AHNGDYKEVLELFKYMR--------AARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
...|++++|++.+++.. +. -+.+...+..+...+.+.|++++|...++.+.+.. |.+...+..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 55677777777777776 32 12234566666677777777777777777777664 446667777777777
Q ss_pred hcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
..|++++|...|++.. .| +...|..+..++...|++++ ++.|++..+. .| +...|..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777765 33 45567777777777777777 7777777764 44 35567777777777777777777
Q ss_pred HHHHhHHhhCCCCC-cchhHHHHHHHhhcC--------ChHHHHHHHHhCC
Q 005969 595 LFERMNRSYGVEPE-MDHYHCVVDLLVRYG--------HLKEAEKIITTMP 636 (667)
Q Consensus 595 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~ 636 (667)
.|++..+ ..|+ ...+..+..++...| ++++|.+.+..+.
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 7776632 2343 345556666665433 3566666666663
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=1.9e-06 Score=76.27 Aligned_cols=172 Identities=8% Similarity=-0.095 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC----ChHHHHH
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG----SIGSSVK 528 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 528 (667)
.+|.+.|++..+.| +...+..+-..|...++.++|...+++..+.+ ++..+..|...|.. + +.++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 45778888888865 67778888888888999999999999998876 67788888888888 6 8999999
Q ss_pred HHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHhc----cCCHHHHHHHHHH
Q 005969 529 IFNEMTD-RNVITWTALISALGL----NGFAQRALEKFREMEFLGFK-PDRVALIAVLTACRH----GGLVREGMELFER 598 (667)
Q Consensus 529 ~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 598 (667)
.|+...+ .+...+..|...|.. .+++++|+++|++..+.|.. .++..+..|...|.. .+++++|..+|++
T Consensus 75 ~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 75 LAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998875 466788888888887 88999999999999886521 126778888888887 8899999999999
Q ss_pred hHHhhCCCCCcchhHHHHHHHhhc-C-----ChHHHHHHHHhC
Q 005969 599 MNRSYGVEPEMDHYHCVVDLLVRY-G-----HLKEAEKIITTM 635 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m 635 (667)
..+. +.+...+..|...|... | +.++|.+++++.
T Consensus 155 A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 155 SSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 8443 34556788888888653 3 899999999876
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=6.8e-07 Score=84.62 Aligned_cols=211 Identities=8% Similarity=-0.009 Sum_probs=123.9
Q ss_pred hcCChhHHHHHHhcCCC----------CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CC-C-HHHHHHH
Q 005969 417 RTGQYNETVKLLSQLER----------PDI----VSWNIVIAACAHNGDYKEVLELFKYMRAARI---YP-D-NYTFVSL 477 (667)
Q Consensus 417 ~~~~~~~a~~~~~~~~~----------~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~-~~~~~~l 477 (667)
..|++++|.+++++..+ ++. ..|......|...|++++|...|.+..+... .+ . ..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677778777765431 111 2455566667777888888877777654311 11 1 2366677
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCC----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHH
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIIS----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTAL 544 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l 544 (667)
...|...|++++|...+++..+..... ....++..+...|.. |++++|...|++..+ .+ ..++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777788888888777765542111 013456667777777 777777777776552 11 3456667
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc---chhHHHH
Q 005969 545 ISALGLNGFAQRALEKFREMEFL----GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM---DHYHCVV 616 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~ 616 (667)
...|...|++++|++.|++..+. +..+. ...+..+..++...|++++|...|++.. ...-.++. .....++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 77777778888888877777652 11111 1245556666666778888887777764 21111111 1233444
Q ss_pred HHHhhcCChHHHHH
Q 005969 617 DLLVRYGHLKEAEK 630 (667)
Q Consensus 617 ~~~~~~g~~~~A~~ 630 (667)
.++ ..|+.+.+.+
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 444 4566666655
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=1.1e-06 Score=83.07 Aligned_cols=193 Identities=10% Similarity=-0.042 Sum_probs=140.8
Q ss_pred hCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC-----CC----cchHHHHHHHHHHcCChhHHH
Q 005969 386 SGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER-----PD----IVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~ 456 (667)
.+++++|...|. .....|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+
T Consensus 29 ~~~~~~A~~~~~------------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 29 KPDYDSAASEYA------------KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp SCCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCCHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 466666666544 456778889999999988887652 11 346888889999999999999
Q ss_pred HHHHHHHHcCC---CCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCC----CchhHHhHHHHHHHhcCChHHHH
Q 005969 457 ELFKYMRAARI---YPD--NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIIS----SDTFVCNMLIDMYGKCGSIGSSV 527 (667)
Q Consensus 457 ~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~ 527 (667)
..|++..+.-. .|. ..++..+...|.. |+++.|...+++..+..... ....++..+...|...|++++|.
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998765311 222 3577788888888 99999999999887653111 12467888999999999999999
Q ss_pred HHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHhccCCHHHH
Q 005969 528 KIFNEMTD-----RN----VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR------VALIAVLTACRHGGLVREG 592 (667)
Q Consensus 528 ~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~------~~~~~li~~~~~~g~~~~A 592 (667)
..|++..+ ++ ...+..+..++...|++++|...|++.. . .|+. .....++.++ ..|+.+.+
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 99998763 22 2256667778888899999999999988 4 4431 1344555555 56777666
Q ss_pred HHH
Q 005969 593 MEL 595 (667)
Q Consensus 593 ~~~ 595 (667)
.++
T Consensus 252 ~~~ 254 (307)
T 2ifu_A 252 LRV 254 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=1.8e-06 Score=76.68 Aligned_cols=123 Identities=8% Similarity=-0.073 Sum_probs=74.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCH
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLV 589 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 589 (667)
+..+...+...|++++|...|++..+|+...|..+...|...|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33445555666666666666666666666666666666666666666666666666542 22345666666666666666
Q ss_pred HHHHHHHHHhHHhhCCCCCc----------------chhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 590 REGMELFERMNRSYGVEPEM----------------DHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
++|.+.+++..+. .+.+. ..+..+..++.+.|++++|.+.+++.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666432 11111 45556666666666666666666665
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=1e-06 Score=77.81 Aligned_cols=107 Identities=12% Similarity=0.012 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCCCCc---chHHH----------------HHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLERPDI---VSWNI----------------VIAACAHNGDYKEVLELFKYMRAARIYP 469 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p 469 (667)
......+...|++++|+..|++..+.++ ..|.. +...|.+.|++++|+..|++..+.. +-
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3455677899999999999998874332 23333 4444555555555555555554432 22
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 470 DNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 470 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+...+..+...+...|+++.|...++++.+.. |.++..+..+...|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 33444444455555555555555555554443 323444444444443
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.2e-06 Score=92.69 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=140.0
Q ss_pred hccCChhhHHHHHHHHH--------HhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHh
Q 005969 482 SKLCNLALGSSLHGLIK--------KTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGL 550 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 550 (667)
...|+.++|.+.++... +. .|.+...+..+...|...|++++|.+.|+++.+ | +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 77899999999999988 43 355778899999999999999999999998873 4 66789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 551 NGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
.|++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|++..+. -+.+...+..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999985 56 46788999999999999999 9999998655 3445678899999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 005969 630 KIITTMP-FPPN-ALIWRTFLEGCQRCRI 656 (667)
Q Consensus 630 ~~~~~m~-~~p~-~~~~~~l~~~~~~~~~ 656 (667)
+.+++.. ..|+ ...|..+..++...|+
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999984 6676 5667777777666554
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.57 E-value=1.1e-06 Score=75.22 Aligned_cols=151 Identities=9% Similarity=0.031 Sum_probs=71.0
Q ss_pred HHHHHHhhcCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccC
Q 005969 410 IIAGIYNRTGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSA-CSKLC 485 (667)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~ 485 (667)
.....+...|++++|...|++..+ .+...+..+...+...|++++|...+++.... .|+...+..+... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 344445555555555556666553 33455666666666777777777777666543 2333222211111 11111
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC--CC---hhhHHHHHHHHHhCCChHHHHHH
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--RN---VITWTALISALGLNGFAQRALEK 560 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~A~~~ 560 (667)
....+...++...+.. |.++..+..+...+...|++++|...|+++.+ |+ ...+..+...+...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223444555554442 32344444555555555555555554444431 21 22344444444444444444444
Q ss_pred HHHH
Q 005969 561 FREM 564 (667)
Q Consensus 561 ~~~~ 564 (667)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=3.8e-06 Score=78.46 Aligned_cols=153 Identities=8% Similarity=-0.015 Sum_probs=78.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhc--CCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCC--CCcchHHHH-HHHHHHcCC
Q 005969 377 GSLMTSYAKSGLISDALAFVTAL--NIPRAVVPANIIAGIYNRTGQYNETVKLLSQLER--PDIVSWNIV-IAACAHNGD 451 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~ 451 (667)
..+...+...|++++|...|++. ..|.+...+..+..++...|++++|...+++... |+....... ...+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 35666777888888888877765 3444455555566666666666666666666553 322211111 112334445
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 005969 452 YKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIF 530 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 530 (667)
.+.|...+++..+.. +.+...+..+...+...|+.++|...+..+.+......+...+..++..+...|+.++|...+
T Consensus 201 ~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 201 DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 555555555554432 223444445555555555555555555555554321112344444444444444444444443
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=0.00011 Score=73.95 Aligned_cols=119 Identities=9% Similarity=-0.075 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-cCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH-GGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.|...+..+.+.+..+.|..+|++. .. ...+...|......-.. .++++.|..+|+...+.++ -++..+...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 4445555555566677777777776 21 11122333221111111 2257777777777755532 223344556666
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHhhhh
Q 005969 619 LVRYGHLKEAEKIITTMPFPPNALIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
..+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..+.
T Consensus 364 e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666777777777777763 35666777766666667766665543
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=3.1e-06 Score=75.85 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch-hHHhHH
Q 005969 437 VSWNIVIAACAHNGDYKEVLELFKYMRAARIY-PD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT-FVCNML 513 (667)
Q Consensus 437 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 513 (667)
..+..+...+...|++++|+..|+++.+.... |. ...+..+..++.+.|+++.|...++.+.+.....+.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 44555667788899999999999998875321 11 3567778888899999999999999988875332121 234444
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HH----------------
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV-AL---------------- 576 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~---------------- 576 (667)
...+...+.. .+ ..|..+...+...|+.++|+..|+++.+. .|+.. .+
T Consensus 85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 4444432110 00 01111222223344455555555555542 33321 11
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 577 -IAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 577 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
..+...|.+.|++++|...|+++.+.+.-.| ....+..+..++.+.|+.++|.+.++.+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2345556677777777777777755521111 1145666777777777777777777765
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.52 E-value=3.4e-07 Score=75.89 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=30.8
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGL 588 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 588 (667)
+...|.+.|++++|.+.|++.. .| +...|..+..+|...|++++|+..|++..+. .|+ ...+..+...|.+.|+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444333 12 2333444444444444444444444444442 232 3334444444444444
Q ss_pred HHH
Q 005969 589 VRE 591 (667)
Q Consensus 589 ~~~ 591 (667)
+++
T Consensus 115 ~~~ 117 (150)
T 4ga2_A 115 TDG 117 (150)
T ss_dssp SSS
T ss_pred hHH
Confidence 433
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=6.2e-06 Score=73.84 Aligned_cols=176 Identities=11% Similarity=-0.028 Sum_probs=118.7
Q ss_pred chhHHHHHHHhhcCChhHHHHHHhcCCC--CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----HHH
Q 005969 406 VPANIIAGIYNRTGQYNETVKLLSQLER--PDI----VSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNY----TFV 475 (667)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~ 475 (667)
..+......+...|++++|+..|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+.. |+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3445567788999999999999998873 443 457778889999999999999999998853 4322 344
Q ss_pred HHHHHHhc------------------cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC
Q 005969 476 SLLSACSK------------------LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN 537 (667)
Q Consensus 476 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 537 (667)
.+..++.. .|+.++|...++.+.+.. |.+.....+........+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~-------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL-------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH--------------
Confidence 44444433 355666666666666553 21222222111110000000
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
....-.+...|.+.|++++|+..|+++.+. .|+. ..+..+..+|.+.|++++|.+.++.+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 001124567788999999999999999985 4542 4688899999999999999999998843
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.50 E-value=7.3e-07 Score=73.89 Aligned_cols=140 Identities=10% Similarity=-0.049 Sum_probs=107.4
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGL 588 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~ 588 (667)
|...+...|++++|...++..... +...+-.+...|.+.|++++|++.|++..+. .| +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 445566678899999999887753 3446677899999999999999999999985 56 57799999999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005969 589 VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKI-ITTM-PFPP-NALIWRTFLEGCQRCRI 656 (667)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m-~~~p-~~~~~~~l~~~~~~~~~ 656 (667)
+++|...|++..+. -+-+...+..+..+|.+.|++++|.+. +++. .+.| ++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999998655 334567899999999999999876665 5654 4455 45666666555655553
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.47 E-value=3.1e-06 Score=88.06 Aligned_cols=147 Identities=12% Similarity=-0.039 Sum_probs=92.0
Q ss_pred cCChhHHHHHHhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 005969 418 TGQYNETVKLLSQLER---PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLH 494 (667)
Q Consensus 418 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 494 (667)
.|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4667777777777653 234566677777777788888888887777642 234566777777777777788887777
Q ss_pred HHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhC---CChHHHHHHHHHHHHc
Q 005969 495 GLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLN---GFAQRALEKFREMEFL 567 (667)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~ 567 (667)
++..+.. |.+...+..+...|...|++++|.+.+++.. .| +...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7777764 4356677777777777777777777777665 23 455666777777777 7777777777777764
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.44 E-value=2.6e-06 Score=88.66 Aligned_cols=149 Identities=12% Similarity=-0.042 Sum_probs=113.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
.|++++|...+++..+.. +-+...+..+...+...|++++|.+.+++..+.. |.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999987742 3356788889999999999999999999998875 5578899999999999999999999
Q ss_pred HHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc---CCHHHHHHHHHHhHH
Q 005969 529 IFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG---GLVREGMELFERMNR 601 (667)
Q Consensus 529 ~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 601 (667)
.+++.. .| +...+..+...|...|++++|.+.+++..+. .| +...+..+...+... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999876 34 5678899999999999999999999999885 45 467888899999999 999999999999865
Q ss_pred h
Q 005969 602 S 602 (667)
Q Consensus 602 ~ 602 (667)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.36 E-value=4.1e-05 Score=71.74 Aligned_cols=158 Identities=9% Similarity=-0.071 Sum_probs=91.7
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCch----hHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHH
Q 005969 478 LSACSKLCNLALGSSLHGLIKKTEIISSDT----FVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VITWTAL 544 (667)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l 544 (667)
+..+...|+++.|..+++...+.....|+. ..+..+...+...+++++|...++...+ ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666777777777777766543222221 1233455555666677777777765541 22 1256667
Q ss_pred HHHHHhCCChHHHHHHHHHHHH----c-CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHh---hCCCCC-cchhHH
Q 005969 545 ISALGLNGFAQRALEKFREMEF----L-GFKPD-RVALIAVLTACRHGGLVREGMELFERMNRS---YGVEPE-MDHYHC 614 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~ 614 (667)
...|...|++++|++.++++.+ . +..+. ..+|..+...|.+.|++++|...+++...- .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 21111 125666777777777777777777765432 111122 345666
Q ss_pred HHHHHhhcCC-hHHHHHHHHhC
Q 005969 615 VVDLLVRYGH-LKEAEKIITTM 635 (667)
Q Consensus 615 l~~~~~~~g~-~~~A~~~~~~m 635 (667)
+..++.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 7777777773 47777666654
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.35 E-value=0.00037 Score=70.18 Aligned_cols=185 Identities=10% Similarity=-0.033 Sum_probs=92.5
Q ss_pred hhhhHHHHHHHHHhhCCHHHHHHHHHhc-CCCCCcchhHHHHHHHhhcCChhHH-HHHHhcCC--C----------CCcc
Q 005969 372 YEYVLGSLMTSYAKSGLISDALAFVTAL-NIPRAVVPANIIAGIYNRTGQYNET-VKLLSQLE--R----------PDIV 437 (667)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~--~----------~~~~ 437 (667)
++.++-..+..+.+.|+.++|.+++++. .. |........ |....+.++. ..+.+... . ....
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~---y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY---YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH---HHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH---HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 3555666777778889999999999887 33 433322211 1111111111 11111110 0 0112
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSAC-SKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM 516 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (667)
.|-..+....+.++.+.|..+|++. ... ..+...|......- ...++.+.|..+|+...+.- |.++..+...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 3444444444556667777777666 211 12223332211111 11235666777777666653 2234444445555
Q ss_pred HHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 517 YGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 517 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
....|+.+.|..+|+.+.+ ....|...+.--...|+.+.+..++++..
T Consensus 364 e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666666666666666632 34455555555555566666666665554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.33 E-value=2.5e-05 Score=69.12 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI 523 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 523 (667)
..+...|++++|...|++. +.|+...+..+...+...|+++.|...++...+.. |.+...+..+...|...|++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcccH
Confidence 3344444444444444443 23344444444444444555555555554444442 22344444555555555555
Q ss_pred HHHHHHHHhcCC--C-----------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005969 524 GSSVKIFNEMTD--R-----------------NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 524 ~~A~~~~~~~~~--~-----------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~ 572 (667)
++|...|+...+ | ....+..+..+|...|++++|.+.|++..+. .|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Ccc
Confidence 555555544431 1 1256677777888888888888888888774 454
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.32 E-value=1.5e-05 Score=74.76 Aligned_cols=161 Identities=10% Similarity=0.060 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDN-----YTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFV 509 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 509 (667)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|+.+.|...+++..+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677788888888888777664321111 12223344455666777777776666543211111 235
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC-----CCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC-Hh
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT-----DRN-----VITWTALISALGLNGFAQRALEKFREMEFLG----FKPD-RV 574 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~p~-~~ 574 (667)
++.+...|...|++++|...+++.. .|+ ..++..+...|...|++++|++.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5556666666666666666665543 111 1355555566666666666666666554321 1111 34
Q ss_pred HHHHHHHHHhccCCHHHH-HHHHHHh
Q 005969 575 ALIAVLTACRHGGLVREG-MELFERM 599 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A-~~~~~~~ 599 (667)
+|..+..+|.+.|++++| ...+++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555566666666666 4545443
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=8.5e-06 Score=68.77 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGL 550 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~ 550 (667)
+..+...+...|+++.|...++...+.. |.+...+..+...+...|++++|...++... .| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3334444444555555555555544442 2234444444444444444444444444333 11 23334444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 005969 551 NGFAQRALEKFREMEF 566 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~ 566 (667)
.|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.29 E-value=9.7e-06 Score=64.54 Aligned_cols=88 Identities=18% Similarity=0.065 Sum_probs=40.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRH 585 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~ 585 (667)
+......|.+.|++++|.+.|++.. .| +...|..+..+|...|++++|++.+++.++. .| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHH
Confidence 3334444444444444444444433 12 3334444444444455555555555544442 22 23344444444555
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.|++++|.+.|++.
T Consensus 94 ~~~~~~A~~~~~~a 107 (126)
T 4gco_A 94 MREWSKAQRAYEDA 107 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555444
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.28 E-value=1.8e-05 Score=74.15 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=111.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc----hhHHhH
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARI-YPDNY----TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSD----TFVCNM 512 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 512 (667)
.+..+...|++++|..++++..+... .|+.. .+..+...+...++.+.|...++.+.+.....++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 36677888999999999988876431 22321 2334566677778889999999988875333323 236888
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD------RN----VITWTALISALGLNGFAQRALEKFREMEFL----GFKPD-RVALI 577 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~ 577 (667)
+...|...|++++|...|+.+.+ .+ ..++..+...|...|++++|++.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999888887762 11 236778888899999999999998887652 22222 55788
Q ss_pred HHHHHHhccCC-HHHHHHHHH
Q 005969 578 AVLTACRHGGL-VREGMELFE 597 (667)
Q Consensus 578 ~li~~~~~~g~-~~~A~~~~~ 597 (667)
.+..+|.+.|+ +++|.+.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHH
Confidence 88888888884 588887765
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.28 E-value=2.1e-05 Score=73.72 Aligned_cols=163 Identities=9% Similarity=-0.066 Sum_probs=102.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch----hHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC----hh
Q 005969 473 TFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDT----FVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN----VI 539 (667)
Q Consensus 473 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~ 539 (667)
.+...+..+...|+++.|.+.++...+.....++. ..+..+...+...|++++|...++...+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34455666777888888888887776653221111 2233455566677788888887776541 11 23
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC-----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCCCC-c
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL-GFKPD-----RVALIAVLTACRHGGLVREGMELFERMNRSY---GVEPE-M 609 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~ 609 (667)
+|+.+...|...|++++|++.+++..+. ...|+ ..++..+...|...|++++|...+++..... +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777778888888888888888877621 01222 1467777778888888888888888764331 11111 3
Q ss_pred chhHHHHHHHhhcCChHHH-HHHHHhC
Q 005969 610 DHYHCVVDLLVRYGHLKEA-EKIITTM 635 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A-~~~~~~m 635 (667)
.+|..+..++.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5567777777888888887 5556543
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.28 E-value=7e-06 Score=65.38 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
..+......|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..+++..+. -+.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHH
Confidence 45677889999999999999999999985 45 5778999999999999999999999998655 3445678999999
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005969 618 LLVRYGHLKEAEKIITTM-PFPPN-ALIWRTF 647 (667)
Q Consensus 618 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 647 (667)
++...|++++|.+.|++. .+.|+ ...+..|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999999987 35565 4444433
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.26 E-value=0.00032 Score=65.08 Aligned_cols=215 Identities=10% Similarity=0.028 Sum_probs=138.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCchhHhHh----hccCC-ccchhhHHHHHHHHHhCCCCCChhHHhhHHHHh----
Q 005969 15 AYSRCGYVEDALRMFLYMINRGFEPTQFTFGGL----LSCDS-LNPVEGAQLQASVLKNGLFCADAFVGTALLGLY---- 85 (667)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 85 (667)
........++|+.+++.++.. .|+..|.-.. +..-. ..++++...++.++..+ |-+..+|+.-..++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHH
Confidence 334445557899999998874 6666543221 11111 37888888888888776 55666666555555
Q ss_pred hcc---CChhHHHHhhccCCC---CCchhHHHHHHHHHhCCChH--HHHHHHHHHHHCCCcCChhhHHHHHHHhcccCc-
Q 005969 86 GRH---GCLDEVVSVFEDMPR---KSLVTWNSIVSIFGKHGFVE--DCMFLFCELVRSEVALTESSFVGVIHGLSNEQD- 156 (667)
Q Consensus 86 ~~~---g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~- 156 (667)
.+. +++++++.+++.+.+ .|..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 444 677888888877754 45566776666777777777 88888888877553 355566655555555554
Q ss_pred -----hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhH-HHHhhccCC------CCCchhHHHHHHHHHccCChh
Q 005969 157 -----LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWS-AEKMFKDVE------IRDVVSWNTIIGALAESENFG 224 (667)
Q Consensus 157 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~ 224 (667)
++++.+.++.++... +-|...|+.+-..+.+.|+..+ +..+.+++. .++...+..+...+.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 677777777777765 3466777777777777766433 333444432 234456666677777777777
Q ss_pred HHHHHHHHhHh
Q 005969 225 KALELYLRMSV 235 (667)
Q Consensus 225 ~a~~~~~~m~~ 235 (667)
+|+++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=2e-05 Score=62.43 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
.+..+...+...|++++|.+.++++. . .+...+..+...+...|++++|+.+++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33334444444444444444444333 1 123344444444444555555555555544431 2233344444445555
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.|++++|...++++
T Consensus 90 ~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 90 QGDYDEAIEYYQKA 103 (125)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 55555555555544
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.24 E-value=0.00062 Score=63.15 Aligned_cols=227 Identities=6% Similarity=-0.001 Sum_probs=150.4
Q ss_pred hhcCC-hhHHHHHHhcCCC--CC-cchHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcc-
Q 005969 416 NRTGQ-YNETVKLLSQLER--PD-IVSWNIVIAACAHNG--DYKEVLELFKYMRAARIYPDNYTFVSLLSAC----SKL- 484 (667)
Q Consensus 416 ~~~~~-~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~- 484 (667)
.+.|. .++|++.++.+.. |+ ...|+.--..+...| ++++++..++.+.... +-+..+++.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 34444 4678888887764 32 334566566666677 8888888888888753 22233444333333 333
Q ss_pred --CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH--HHHHHHHhcCC---CChhhHHHHHHHHHhCCC----
Q 005969 485 --CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIG--SSVKIFNEMTD---RNVITWTALISALGLNGF---- 553 (667)
Q Consensus 485 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---- 553 (667)
++++++..+++.+.+.. |.+..+|+.-...+.+.|+++ ++++.++.+.+ .|...|+.-...+...++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 67888888888888775 446777777777777778777 88888888773 355667666666666665
Q ss_pred --hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH-HHHHHHHhHHhh-CCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 554 --AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVRE-GMELFERMNRSY-GVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 554 --~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+..++.... .-+.++..+..+.+++.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 788888888888752 3356778777777777776444 556666653321 11335566778888888888888888
Q ss_pred HHHHhCC--CCCC-HHHHHH
Q 005969 630 KIITTMP--FPPN-ALIWRT 646 (667)
Q Consensus 630 ~~~~~m~--~~p~-~~~~~~ 646 (667)
++++.+. ..|- ...|+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHH
Confidence 8888874 4443 444443
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=2.3e-05 Score=62.16 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++... .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4577888899999999999999999998862 345778899999999999999999999999655 3456678889999
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005969 618 LLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGCQR 653 (667)
Q Consensus 618 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~ 653 (667)
.+...|++++|.+.++++. ..| +...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999873 334 45556555555543
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=1.5e-05 Score=68.14 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=65.6
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHH-HHhCCCh--HH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISA-LGLNGFA--QR 556 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~~~~--~~ 556 (667)
..|+++.|...++...+.. |.+...+..+...|...|++++|...|+...+ .+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455566666666555543 33455666666666666666666666665542 244455555555 5566666 67
Q ss_pred HHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 557 ALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 557 A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
|+..+++..+. .| +...+..+...|...|++++|...++++.
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77777766664 33 34556666666677777777777777664
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=7.5e-06 Score=71.91 Aligned_cols=152 Identities=8% Similarity=-0.044 Sum_probs=70.8
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCC
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
...|++++|.+.++.+.. .......++..+...+...|+++.|...+++..+. +..+.....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777774444432 11123445666666666667777776666665542 1111123444555555555555
Q ss_pred hHHHHHHHHhcCC-----C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHHhccC
Q 005969 523 IGSSVKIFNEMTD-----R-N----VITWTALISALGLNGFAQRALEKFREMEFLGF---KPD--RVALIAVLTACRHGG 587 (667)
Q Consensus 523 ~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~---~p~--~~~~~~li~~~~~~g 587 (667)
+++|...+++..+ + + ...+..+...+...|++++|...+++..+..- .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 5555555554331 1 1 12344444555555555555555555442100 011 112344444455555
Q ss_pred CHHHHHHHHHHh
Q 005969 588 LVREGMELFERM 599 (667)
Q Consensus 588 ~~~~A~~~~~~~ 599 (667)
++++|...+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=2.3e-05 Score=63.10 Aligned_cols=94 Identities=11% Similarity=-0.029 Sum_probs=51.0
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+...+..+...+...|++++|...|+...+ | +...+..+...+...|++++|++.+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344455555555555555555555555432 2 34455555555556666666666666655531 2234455555556
Q ss_pred HhccCCHHHHHHHHHHhH
Q 005969 583 CRHGGLVREGMELFERMN 600 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~ 600 (667)
+...|++++|...+++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666553
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=8.8e-06 Score=67.03 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=60.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLT 581 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~ 581 (667)
+...+..+...+...|++++|...|+... .| +...|..+..+|...|++++|+..|++.... .| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 44455556666666666666666666554 23 4556666666677777777777777776664 33 3456666666
Q ss_pred HHhccCCHHHHHHHHHHhHHh
Q 005969 582 ACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777766444
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.20 E-value=1.5e-05 Score=65.47 Aligned_cols=93 Identities=15% Similarity=-0.021 Sum_probs=48.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLT 581 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~ 581 (667)
+...+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|++.|++..+. .| ++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 34444555555555555555555555544 23 3445555555555555555555555555553 33 2445555555
Q ss_pred HHhccCCHHHHHHHHHHhH
Q 005969 582 ACRHGGLVREGMELFERMN 600 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~ 600 (667)
+|...|++++|...|++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555553
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.19 E-value=1.9e-05 Score=63.32 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=52.3
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
..+..+...+...|++++|...++... .| +...+..+...+...|++++|++.+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 344444444444455555555444433 11 33344444555555555555555555555431 122344455555555
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
..|++++|...+++..+. .+.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555554332 12233344444444444443
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.19 E-value=9.8e-06 Score=71.14 Aligned_cols=150 Identities=6% Similarity=-0.061 Sum_probs=104.9
Q ss_pred hcCChhHHHH---HHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChh
Q 005969 417 RTGQYNETVK---LLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAA----RIYP-DNYTFVSLLSACSKLCNLA 488 (667)
Q Consensus 417 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 488 (667)
..|++++|.+ .+..........+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666666 444433334566777888888889999999888887652 2222 2356777778888999999
Q ss_pred hHHHHHHHHHHhCCCC-----CchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhCCCh
Q 005969 489 LGSSLHGLIKKTEIIS-----SDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RNV----ITWTALISALGLNGFA 554 (667)
Q Consensus 489 ~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~ 554 (667)
.|...+++..+..... .....+..+...+...|++++|...+++..+ .+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 9999888776651111 1245677888889999999999998887652 222 2457788889999999
Q ss_pred HHHHHHHHHHHH
Q 005969 555 QRALEKFREMEF 566 (667)
Q Consensus 555 ~~A~~~~~~~~~ 566 (667)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=4.4e-05 Score=64.27 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=73.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
...+..+...+...|++++|...|+... . .+...+..+...+...|++++|++.+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445556666666677777776666554 2 245566666666666777777777776666642 22455666666666
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCCcchh--HHHHHHHhhcCChHHHHHHHHhC
Q 005969 584 RHGGLVREGMELFERMNRSYGVEPEMDHY--HCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
...|++++|...+++.... .+.+...+ ..++..+.+.|++++|.+.+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677777777777666443 12222233 22333355566666666665543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.19 E-value=2.4e-05 Score=62.61 Aligned_cols=118 Identities=12% Similarity=-0.089 Sum_probs=97.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
+...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34567778889999999999999999998852 336778899999999999999999999998655 344567888999
Q ss_pred HHHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh
Q 005969 617 DLLVRYGHLKEAEKIITTMP-FP-PNALIWRTFLEGCQRCRIA 657 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~~~~ 657 (667)
.++.+.|++++|.+.+++.. .. .+...+..+...+...|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999873 33 4677888888888877764
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.18 E-value=1.1e-05 Score=66.26 Aligned_cols=91 Identities=7% Similarity=-0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHh
Q 005969 474 FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGL 550 (667)
Q Consensus 474 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~ 550 (667)
+..+...+.+.|++++|...|+.+.+.. |.++..|..+..+|...|++++|...|++.. .| +...|..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 3333444444444444444444444443 2244444444444444444444444444443 22 23344444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 005969 551 NGFAQRALEKFREMEF 566 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~ 566 (667)
.|++++|+..|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444445444444444
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.16 E-value=2.3e-05 Score=63.05 Aligned_cols=115 Identities=8% Similarity=-0.087 Sum_probs=94.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
+...+..+...+...|++++|++.+++..+. .| +...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 4567888899999999999999999999885 44 6778999999999999999999999998655 34466788999
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 005969 616 VDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGCQRCR 655 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~ 655 (667)
..++.+.|++++|.+.+++.. ..| +...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999873 344 3566666666666554
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.14 E-value=4.6e-06 Score=77.58 Aligned_cols=181 Identities=9% Similarity=-0.091 Sum_probs=91.7
Q ss_pred HHHhhcCChhHHHHHHhcCC--C-CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhh
Q 005969 413 GIYNRTGQYNETVKLLSQLE--R-PDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLAL 489 (667)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 489 (667)
..+...|++++|+..|++.. . .+...|..+...|.+.|++++|...+++..+.. +-+...+..+..++...|++++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 33334444444444444433 1 245556666777777777777777777776542 2345566667777777777777
Q ss_pred HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005969 490 GSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGF 569 (667)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 569 (667)
|...++...+.... +...+...+....+..+.......-......+......+ ..+ ..|+.++|++.+++..+.
T Consensus 91 A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~-- 164 (281)
T 2c2l_A 91 AIANLQRAYSLAKE--QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRNHEG-- 164 (281)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTT--
T ss_pred HHHHHHHHHHhCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhcc--
Confidence 77777776655311 111111122221111111111111112222233333323 222 256777777777776653
Q ss_pred CCCHhH-HHHHHHHHhcc-CCHHHHHHHHHHhH
Q 005969 570 KPDRVA-LIAVLTACRHG-GLVREGMELFERMN 600 (667)
Q Consensus 570 ~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~~~ 600 (667)
.|+... ...+...+.+. +.+++|.++|....
T Consensus 165 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 165 HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555432 23333333433 56777888887664
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.14 E-value=2.2e-05 Score=67.10 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=93.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH-HHhcCCh--
Q 005969 447 AHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDM-YGKCGSI-- 523 (667)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 523 (667)
...|++++|...+++..+.. +.+...+..+...+...|+++.|...++.+.+.. |.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888888888877753 4466788888888888999999999998888775 4467777788888 7788888
Q ss_pred HHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 005969 524 GSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV 574 (667)
Q Consensus 524 ~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 574 (667)
++|...++... .| +...+..+...|...|++++|...|++..+. .|+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCc
Confidence 99999988776 34 4567888888999999999999999999885 55443
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=7.1e-05 Score=67.72 Aligned_cols=136 Identities=8% Similarity=-0.028 Sum_probs=89.9
Q ss_pred HhHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhc
Q 005969 510 CNMLIDMYGKCGSIGSSVKIFNEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRH 585 (667)
Q Consensus 510 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~ 585 (667)
.-.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3445667777888888888888776 3433355555567778888888888887554421 111 2356677778888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 005969 586 GGLVREGMELFERMNRSYGVEPE--MDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNALIWRTF 647 (667)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 647 (667)
.|++++|+..|++.. .....|. .........++.+.|+.++|..+|+++. ..|+...+..|
T Consensus 184 LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 888888888888774 3122143 3355667777788888888888888873 45664444443
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.08 E-value=6.3e-05 Score=61.80 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
+...+..+...+...|++++|+..|++.... .| +...|..+..+|...|++++|...+++.... -+.++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 3456777888999999999999999999985 45 6778889999999999999999999998655 34566788999
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005969 616 VDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m 635 (667)
..++...|++++|.+.|++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999887
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.07 E-value=3e-05 Score=74.16 Aligned_cols=86 Identities=9% Similarity=-0.134 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
..|..+..+|.+.|++++|+..+++..+. .| +...|..+..+|...|++++|...|++..+. .+.+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 56666666677777777777777776664 33 4556666666777777777777777766433 2333455666666
Q ss_pred HHhhcCChHHH
Q 005969 618 LLVRYGHLKEA 628 (667)
Q Consensus 618 ~~~~~g~~~~A 628 (667)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666666
No 144
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.07 E-value=7.7e-07 Score=84.19 Aligned_cols=421 Identities=11% Similarity=0.075 Sum_probs=266.8
Q ss_pred CChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhc
Q 005969 73 ADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLS 152 (667)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 152 (667)
..+.+|+.|..++.+.|++.+|++.|= +..|...|..+|.+..+.|.+++.+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 456678999999999999999888663 345777899999999999999999999887766533 3344457889999
Q ss_pred ccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCC------------------------CCch
Q 005969 153 NEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEI------------------------RDVV 208 (667)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 208 (667)
+.++..+.++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8888765544433 45665667788888888988888888877641 3677
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 005969 209 SWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYA 288 (667)
Q Consensus 209 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (667)
+|..+-.+|...+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++.-... -......|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 899999999999988877655444332 222 2334566678888888888888776521 2345667888888888
Q ss_pred hcCChHHHHHHHhccCC-----------CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhh
Q 005969 289 KCDNLEGAHLCFSEISN-----------KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQ 356 (667)
Q Consensus 289 ~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 356 (667)
+- +.++..+.++..-. .....|.-++-.|.+..+++ |....-+ . .|+...-..+.....+..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~---h--~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTS---C--HHHHCCGGGGTTTGGGCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHh---C--ChhhccHHHHHHHHHHcc
Confidence 75 45555555554332 23456777777777777777 5432211 0 001111111111122222
Q ss_pred hhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCC-------------CcchhHHHHHHHhhcCChhH
Q 005969 357 LLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPR-------------AVVPANIIAGIYNRTGQYNE 423 (667)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~ 423 (667)
..++.-.....-+.-.|..++-|+..+...=+...+.++++..+.-| ....-.++-+.|....+++.
T Consensus 349 N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 23444444444455556666677777766666677777776663222 22223456667777777776
Q ss_pred HHHHHhcCCCCCc------------chHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhH
Q 005969 424 TVKLLSQLERPDI------------VSWN-IVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALG 490 (667)
Q Consensus 424 a~~~~~~~~~~~~------------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 490 (667)
-..-.+....-|. .-|. +-...|.+.+++.+++.+.++ ...|.-.|......++.+.+
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~ela 499 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELA 499 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHH
T ss_pred HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHH
Confidence 5554444332222 2222 223345556666666554322 12233345556778888888
Q ss_pred HHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 491 SSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
.++++...+.| +...|.+.+-.|...=+++-+.++
T Consensus 500 eeLL~yFv~~g----~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 500 EELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHC----STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcC----chHHHHHHHHHHhhccChHHHHHH
Confidence 88988888877 667788887777777778877766
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.06 E-value=3.5e-05 Score=61.37 Aligned_cols=103 Identities=9% Similarity=-0.064 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhC-CCCC----cchhH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYG-VEPE----MDHYH 613 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 613 (667)
.+..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++..+... ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3445555566666666666666666553 33 344555566666666666666666665533210 1111 12445
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005969 614 CVVDLLVRYGHLKEAEKIITTM-PFPPNALIW 644 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 644 (667)
.+..++...|++++|.+.|++. ...|++.+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 5555566666666666666554 234444443
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=7e-06 Score=76.29 Aligned_cols=188 Identities=5% Similarity=-0.075 Sum_probs=124.8
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 436 IVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++...+.. |.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3456677788889999999999999988753 3367788888889999999999999999888764 557888899999
Q ss_pred HHHhcCChHHHHHHHHhcCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHH
Q 005969 516 MYGKCGSIGSSVKIFNEMTD--RN-VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREG 592 (667)
Q Consensus 516 ~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (667)
+|...|++++|...|+...+ |+ ...+...+....+ ..++.. +......-...+......+.. + ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 99999999999999987763 21 1111112222111 111222 222333334445444444433 2 26888899
Q ss_pred HHHHHHhHHhhCCCCC-cchhHHHHHHHhhc-CChHHHHHHHHhC
Q 005969 593 MELFERMNRSYGVEPE-MDHYHCVVDLLVRY-GHLKEAEKIITTM 635 (667)
Q Consensus 593 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m 635 (667)
.+.++... . ..|+ ......+...+.+. +.+++|.++|.+.
T Consensus 155 ~~~~~~al-~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNH-E--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGG-T--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhh-c--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888663 2 3444 33444455555554 6688899999766
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.04 E-value=4.5e-05 Score=60.70 Aligned_cols=92 Identities=9% Similarity=-0.111 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV 620 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (667)
|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+. .+.+...+..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 3344444555555555555555554431 123444555555555555555555555554332 1223344455555555
Q ss_pred hcCChHHHHHHHHhC
Q 005969 621 RYGHLKEAEKIITTM 635 (667)
Q Consensus 621 ~~g~~~~A~~~~~~m 635 (667)
..|++++|.+.+++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 555555555555544
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.02 E-value=5.1e-05 Score=68.64 Aligned_cols=124 Identities=14% Similarity=0.010 Sum_probs=89.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCC-C----hhhHHHHHHHHHh
Q 005969 476 SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDR-N----VITWTALISALGL 550 (667)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~ 550 (667)
.+...+...|++++|.++++.+...+ |.+. ....+...+.+.+++++|+..|+...+. + ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 34556677788888888887766544 3123 5566666888889999999998876642 2 2356777888899
Q ss_pred CCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 551 NGFAQRALEKFREMEFLGFKPD--RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999998875433254 235566777788899999999999988544
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=9.8e-05 Score=73.79 Aligned_cols=154 Identities=9% Similarity=-0.084 Sum_probs=70.2
Q ss_pred HHHHhhcCChhHHHHHHhcCCC--CCc------------------chHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC
Q 005969 412 AGIYNRTGQYNETVKLLSQLER--PDI------------------VSWNIVIAACAHNGDYKEVLELFKYMRAAR-IYPD 470 (667)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~--~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 470 (667)
...+.+.|++++|++.|..+.+ ++. ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566666666666655441 100 024455556666666666666665544321 1111
Q ss_pred HH----HHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-------
Q 005969 471 NY----TFVSLLSACSKLCNLALGSSLHGLIKKT----EIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD------- 535 (667)
Q Consensus 471 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------- 535 (667)
.. +.+.+-..+...|+.+.+..+++..... +..+....++..+...|...|++++|..++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1112222233345555555555544322 11111233444555555555555555555544320
Q ss_pred -C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 536 -R-NVITWTALISALGLNGFAQRALEKFREME 565 (667)
Q Consensus 536 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 565 (667)
+ ....+..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 11244444555555555555555555443
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=4e-05 Score=61.07 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=61.0
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HhHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLG--FKPD----RVALIA 578 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~p~----~~~~~~ 578 (667)
..+..+...+.+.|++++|+..|++.. .| +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344556666666666666666666554 23 44566666677777777777777777665521 0111 125566
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchh
Q 005969 579 VLTACRHGGLVREGMELFERMNRSYGVEPEMDHY 612 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (667)
+..++...|++++|++.|++.... .|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHH
Confidence 666677777777777777766433 3454443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=9.3e-05 Score=57.77 Aligned_cols=93 Identities=14% Similarity=-0.039 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34445555555566666666666655531 223445555555555666666666666655333 222344555555666
Q ss_pred hhcCChHHHHHHHHhC
Q 005969 620 VRYGHLKEAEKIITTM 635 (667)
Q Consensus 620 ~~~g~~~~A~~~~~~m 635 (667)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666666666554
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=7.1e-05 Score=61.09 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=41.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc
Q 005969 511 NMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG 586 (667)
Q Consensus 511 ~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~ 586 (667)
..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|+..|++..+. .| ++..+..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 333444444444444444444433 22 3334444445555555555555555555543 22 233444455555555
Q ss_pred CCHHHHHHHHHHh
Q 005969 587 GLVREGMELFERM 599 (667)
Q Consensus 587 g~~~~A~~~~~~~ 599 (667)
|++++|...|++.
T Consensus 100 g~~~~A~~~~~~a 112 (142)
T 2xcb_A 100 GDLDGAESGFYSA 112 (142)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555544
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=9.5e-05 Score=57.08 Aligned_cols=95 Identities=14% Similarity=-0.004 Sum_probs=56.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHhHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT---DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKP--DRVALIAVL 580 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p--~~~~~~~li 580 (667)
+...+..+...+...|++++|...++... ..+...+..+...+...|++++|++.+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 44455555566666666666666665544 1234455566666666666666666666666642 22 345566666
Q ss_pred HHHhcc-CCHHHHHHHHHHhHH
Q 005969 581 TACRHG-GLVREGMELFERMNR 601 (667)
Q Consensus 581 ~~~~~~-g~~~~A~~~~~~~~~ 601 (667)
.++... |++++|.+.+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 666666 666666666666643
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.99 E-value=8.2e-05 Score=62.52 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=50.7
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~ 582 (667)
...+..+...+...|++++|...|++.. .| +...|..+..+|...|++++|+..+++..+. .| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444445555555555555555555444 12 3445555555555666666666666665553 23 34455555556
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 005969 583 CRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~ 602 (667)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666655433
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00065 Score=67.71 Aligned_cols=256 Identities=8% Similarity=-0.064 Sum_probs=162.3
Q ss_pred HHHHHHhhCCHHHHHHHHHhc--CCCCCc-----------------chhHHHHHHHhhcCChhHHHHHHhcCCC-----C
Q 005969 379 LMTSYAKSGLISDALAFVTAL--NIPRAV-----------------VPANIIAGIYNRTGQYNETVKLLSQLER-----P 434 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~--~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 434 (667)
-...+.+.|++++|.+.|..+ ..+... ..+..+...|...|++++|.+.+....+ +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356678899999999999887 111111 1256788899999999999999988763 1
Q ss_pred Cc----chHHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhCC---
Q 005969 435 DI----VSWNIVIAACAHNGDYKEVLELFKYMRA----ARIYPD-NYTFVSLLSACSKLCNLALGSSLHGLIKKTEI--- 502 (667)
Q Consensus 435 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 502 (667)
+. .+.+.+-..+...|+++.|..++.+... .+..+. ..++..+...+...|+++.|..+++.+...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 1122233333456899999999988653 333443 45778889999999999999999998765421
Q ss_pred -CCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHH----c
Q 005969 503 -ISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD-----RN-----VITWTALISALGLNGFAQRALEKFREMEF----L 567 (667)
Q Consensus 503 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~ 567 (667)
.+.....+..++..|...|++++|..+++.... ++ ...+..+...+...|++++|...|.+..+ .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 122356788899999999999999999987652 22 23566667778888999999998887764 2
Q ss_pred CCCCCHhHHH-H---HHHHHhccCCHHHHHHHHHHhH-HhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 568 GFKPDRVALI-A---VLTACRHGGLVREGMELFERMN-RSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 568 g~~p~~~~~~-~---li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+......... . .+-+....+..+.....+..-. ......|....+..+..++. .+++....+.+...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~ 321 (434)
T 4b4t_Q 250 TTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQY 321 (434)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 2222222111 1 1111112222222223322110 11122333455666666665 45667766666665
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.97 E-value=0.00013 Score=59.04 Aligned_cols=94 Identities=9% Similarity=-0.095 Sum_probs=54.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
+...+..+...+...|++++|...|+... .| +...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 45556666666666666666666666544 22 34455566666666666666666666666532 2234455566666
Q ss_pred HhccCCHHHHHHHHHHhH
Q 005969 583 CRHGGLVREGMELFERMN 600 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~ 600 (667)
|...|++++|...+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666553
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.96 E-value=0.002 Score=60.36 Aligned_cols=222 Identities=10% Similarity=-0.017 Sum_probs=143.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc--c-CCc-cchhhHHHHHHHHHhCCCCCChhHHhhHHHH
Q 005969 9 FNSIISAYSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS--C-DSL-NPVEGAQLQASVLKNGLFCADAFVGTALLGL 84 (667)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (667)
++.+-......+..++|+++++.++.. .|+..|.-..-. + .-+ .++++...++.++..+ +-+..+|+.-...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 445445555667778899999999985 666654322222 1 122 5889999999999877 7777888887777
Q ss_pred hhcc-C-ChhHHHHhhccCCCC---CchhHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCcCChhhHHHHHHHh
Q 005969 85 YGRH-G-CLDEVVSVFEDMPRK---SLVTWNSIVSIFGKHGFVE--------DCMFLFCELVRSEVALTESSFVGVIHGL 151 (667)
Q Consensus 85 ~~~~-g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~ 151 (667)
+.+. + ++++++++++.+.+. |..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 7766 6 888999999888763 4556665555555555555 88889998887653 3666777776666
Q ss_pred cccCc-------hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh--------------------hHHHHhhccCCC
Q 005969 152 SNEQD-------LEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI--------------------WSAEKMFKDVEI 204 (667)
Q Consensus 152 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~ 204 (667)
.+.+. ++++.+..+..+... +-|...|+-+-..+.+.|+. ....+....+..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 66654 577778887777765 44677777766666666553 222222222221
Q ss_pred ---------CCchhHHHHHHHHHccCChhHHHHHHHHhHhC
Q 005969 205 ---------RDVVSWNTIIGALAESENFGKALELYLRMSVD 236 (667)
Q Consensus 205 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 236 (667)
++......+...|...|+.++|.++++.+.+.
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23344555666666666667777776666543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=8.4e-05 Score=60.61 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
...+..+...+...|++++|+..|++.... .| +...|..+..+|...|++++|...+++.... .+.++..+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 345666778889999999999999999985 45 5778889999999999999999999999655 345667888999
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
.++...|++++|.+.+++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999887
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.94 E-value=0.0001 Score=61.93 Aligned_cols=113 Identities=10% Similarity=-0.053 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCV 615 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 615 (667)
+...+..+...+...|++++|++.|++..+. .| +...|..+..+|...|++++|+..+++..+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456778889999999999999999999985 45 6778999999999999999999999999655 34457788999
Q ss_pred HHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHh
Q 005969 616 VDLLVRYGHLKEAEKIITTMP----FPPNALIWRTFLEGCQR 653 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~ 653 (667)
..++.+.|++++|.+.|++.. ..++......+..+..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999872 33443344444444433
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.93 E-value=0.00014 Score=69.48 Aligned_cols=93 Identities=14% Similarity=-0.018 Sum_probs=71.8
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~ 582 (667)
...+..+...|.+.|++++|...++... .| +...|..+..+|...|++++|+..|++..+. .| +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 4677777788888888888888887766 23 5667888888888899999999999998885 55 46678888888
Q ss_pred HhccCCHHHH-HHHHHHhHH
Q 005969 583 CRHGGLVREG-MELFERMNR 601 (667)
Q Consensus 583 ~~~~g~~~~A-~~~~~~~~~ 601 (667)
+...|++++| ...++.|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8888888888 556666643
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00011 Score=58.50 Aligned_cols=94 Identities=15% Similarity=0.007 Sum_probs=62.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTA 582 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~ 582 (667)
...+..+...+.+.|++++|...|++.. .| +...|..+..++...|++++|+..+++..+. .| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3445555666666677777777666654 23 4556677777777777777777777777764 34 35567777777
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 005969 583 CRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777776433
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.93 E-value=4.8e-05 Score=58.84 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=18.2
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 3 DRNVVSFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
+.+...|..+...+.+.|++++|+..|++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 34 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ 34 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555556666666666666655554
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=4.5e-05 Score=61.05 Aligned_cols=106 Identities=10% Similarity=0.000 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC-CCC----cchhHHH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV-EPE----MDHYHCV 615 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~~l 615 (667)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++......- .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444555555555555555554431 223444455555555555555555555554332110 111 3344455
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005969 616 VDLLVRYGHLKEAEKIITTM-PFPPNALIWRTF 647 (667)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 647 (667)
..++.+.|++++|.+.+++. ...|+...+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555555544 133444433333
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=1.6e-05 Score=69.40 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=76.9
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC--C-C----------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD--R-N----------------VITWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
...+..+...+...|++++|...|++..+ | + ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34445555556666666666666665441 1 1 256677777778888888888888887775
Q ss_pred CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 568 GFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
. +.+...+..+..+|...|++++|...|++.... .+.+...+..+..++...|+.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234567777778888888888888888877444 2334456666666666666665555
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.91 E-value=0.00017 Score=56.19 Aligned_cols=93 Identities=15% Similarity=0.014 Sum_probs=60.1
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTAC 583 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 583 (667)
...+..+...+...|++++|...++... .| +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445555666666666666666666554 22 45566666667777777777777777776642 22455667777777
Q ss_pred hccCCHHHHHHHHHHhH
Q 005969 584 RHGGLVREGMELFERMN 600 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~~~ 600 (667)
...|++++|...+++..
T Consensus 83 ~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 77777777777777663
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.89 E-value=2.4e-05 Score=68.39 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=102.3
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CH----------------
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTD---RNVITWTALISALGLNGFAQRALEKFREMEFLGFKP-DR---------------- 573 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~---------------- 573 (667)
+......|+++++.+.|+.-.+ .....+..+...+...|++++|+..|++..+. .| +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHH
Confidence 3444455666666666654332 13456777888999999999999999999984 23 22
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005969 574 VALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGC 651 (667)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 651 (667)
..+..+..+|...|++++|...+++.... .+.+...+..+..++...|++++|.+.|++.. ..| +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 68888999999999999999999999655 34566788999999999999999999999873 344 567777777777
Q ss_pred HhcCChhHHh
Q 005969 652 QRCRIAKYDT 661 (667)
Q Consensus 652 ~~~~~~~~a~ 661 (667)
...++.+.+.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 7666665554
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.00021 Score=58.58 Aligned_cols=94 Identities=12% Similarity=-0.083 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYH 613 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (667)
...+..+...+...|++++|++.|++..+. .|+ ...+..+..+|...|++++|...+++.... .+.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 334445555555555555555555555552 343 344555555555555566655555555333 122334455
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 005969 614 CVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+..++...|++++|.+.+++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555556666665555554
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.84 E-value=5.9e-05 Score=60.33 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCC----HhHHHHH
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMT--D-RNVITWTALISALGLNGFAQRALEKFREMEFLGF--KPD----RVALIAV 579 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~p~----~~~~~~l 579 (667)
.+..+...+...|++++|...|+... . .+...+..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44445555555555555555555443 1 2344555555566666666666666666555310 111 4456666
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 005969 580 LTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~ 601 (667)
..++...|++++|.+.+++...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6666666777777777666643
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00035 Score=57.23 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=69.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcC--CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHH
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DRN----VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIA 578 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ 578 (667)
+...+..+...+...|++++|...|++.. .|+ ...|..+...|...|++++|+..+++..+. .| +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 45566666777777777777777777665 344 456777777788888888888888887774 34 4567777
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 005969 579 VLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
+..++...|++++|...+++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 788888888888888888877543
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.82 E-value=0.00023 Score=57.40 Aligned_cols=96 Identities=6% Similarity=-0.145 Sum_probs=59.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 537 NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 44556666666666777777777776666642 223556666666666677777777776666443 233445666666
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
.++...|++++|.+.+++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 6666677777776666655
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.82 E-value=0.0084 Score=56.25 Aligned_cols=208 Identities=12% Similarity=0.007 Sum_probs=98.7
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-C-ChHH
Q 005969 450 GDYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLC-NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-G-SIGS 525 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 525 (667)
+..++|+++++++... .|+ ...++.--..+...+ .+++++.+++.+...+ |.+..+|+.-...+... + ++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345566666666553 233 233444333344444 3666666666666553 33455555544444444 4 5566
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC------
Q 005969 526 SVKIFNEMTDR---NVITWTALISALGLNGFAQ--------RALEKFREMEFLGFKPDRVALIAVLTACRHGGL------ 588 (667)
Q Consensus 526 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~------ 588 (667)
++++++.+.+. |...|+--...+.+.|..+ ++++.++++.+.. .-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 66666665532 3334443333333333333 5666666666542 2245555555555555554
Q ss_pred -HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C-------CC
Q 005969 589 -VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHL--------------------KEAEKIITTMP-F-------PP 639 (667)
Q Consensus 589 -~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~m~-~-------~p 639 (667)
++++++.+++++.. .+-|...|+.+-..+.+.|+. .+..++..++. . .+
T Consensus 223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 45566666555433 233334444444444444432 22333333331 1 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHhhhh
Q 005969 640 NALIWRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 640 ~~~~~~~l~~~~~~~~~~~~a~~~~ 664 (667)
+...+..|...|...|+.+.|..+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555666666666666555554443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.77 E-value=0.00011 Score=61.44 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCC-CCcc
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLG----FKP-DRVALIAVLTACRHGGLVREGMELFERMNRSY---GVE-PEMD 610 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~ 610 (667)
.+..+...+...|++++|.+.+++..+.. -.+ ...++..+...+...|++++|...+++..... +.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555555555555555555544310 000 02345555555666666666666665553221 110 0123
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHh
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITT 634 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~ 634 (667)
.+..+...+...|++++|.+.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 455555666666666666665554
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.76 E-value=0.00023 Score=56.72 Aligned_cols=86 Identities=14% Similarity=-0.021 Sum_probs=37.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---cchhHHHHHH
Q 005969 546 SALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVEPE---MDHYHCVVDL 618 (667)
Q Consensus 546 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~ 618 (667)
..+...|++++|...|++..+. .|+. ..+..+..++...|++++|...++++... .+.+ ...+..+..+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 3444445555555555554442 2221 23444444444555555555555544332 1111 2334444444
Q ss_pred HhhcCChHHHHHHHHhC
Q 005969 619 LVRYGHLKEAEKIITTM 635 (667)
Q Consensus 619 ~~~~g~~~~A~~~~~~m 635 (667)
+.+.|++++|.+.+++.
T Consensus 86 ~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 55555555555554444
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=0.0002 Score=56.27 Aligned_cols=88 Identities=6% Similarity=-0.151 Sum_probs=39.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY 622 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (667)
+...+.+.|++++|+..+++..+. .| +...|..+..++...|++++|...+++..+. -+.+...+..+..++.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334444445555555555554442 23 2334444444444555555555555544322 112233444444445555
Q ss_pred CChHHHHHHHHhC
Q 005969 623 GHLKEAEKIITTM 635 (667)
Q Consensus 623 g~~~~A~~~~~~m 635 (667)
|++++|.+.+++.
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555544443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.68 E-value=0.00055 Score=54.45 Aligned_cols=88 Identities=15% Similarity=0.022 Sum_probs=58.0
Q ss_pred HHHHHHhcCChHHHHHHHHhcC--CCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMT--DRNV----ITWTALISALGLNGFAQRALEKFREMEFLGFKPD----RVALIAVLTA 582 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~ 582 (667)
+...+...|++++|...|+.+. .|+. ..+..+..++...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 4455556666666666666554 2322 25556667777777777787777777764 343 4456677777
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 005969 583 CRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~ 602 (667)
+...|++++|...++++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77788888888888777554
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.67 E-value=5.3e-05 Score=59.33 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHcCC-CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHH
Q 005969 552 GFAQRALEKFREMEFLGF-KP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 552 ~~~~~A~~~~~~~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
|++++|+..|++..+.+. .| +...+..+..+|...|++++|...+++..+. .+-+...+..+..++.+.|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444210 12 1224444444444444555554444444322 1222334444444444445555444
Q ss_pred HHHHhC
Q 005969 630 KIITTM 635 (667)
Q Consensus 630 ~~~~~m 635 (667)
+.+++.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 177
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.66 E-value=0.00016 Score=68.84 Aligned_cols=140 Identities=13% Similarity=0.048 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhc
Q 005969 175 ELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAG 254 (667)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (667)
.+.+|..|..+....|.+.+|.+.|-+. .|...|..+|....+.|.+++-+..+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4567788888888888888877766554 466778889999999999999999887666553333 344578888888
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCC------------------------CCccc
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISN------------------------KNIVS 310 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~ 310 (667)
.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.+ .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888776554443 45666667777888888888888888776653 35667
Q ss_pred HHHHHHHHhcCCChH
Q 005969 311 WNALILGYASKSSPT 325 (667)
Q Consensus 311 ~~~li~~~~~~~~~~ 325 (667)
|-.+-.+|...+.+.
T Consensus 202 WKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 202 WKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHTHHHHHSCTTT
T ss_pred HHHHHHHHhCchHHH
Confidence 777777777777665
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.00019 Score=59.85 Aligned_cols=137 Identities=11% Similarity=-0.033 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIY-PD----NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNM 512 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 512 (667)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+.....++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---- 86 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA---- 86 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH----
Confidence 3445555666666666666666665432100 11 12344444445555555555555554433211000000
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhccC
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFL----GFKPD-RVALIAVLTACRHGG 587 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g 587 (667)
.....+..+...+...|++++|.+.+++..+. +..+. ..++..+...+...|
T Consensus 87 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 87 -----------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 01234455566666677777777766665542 11111 346677777788888
Q ss_pred CHHHHHHHHHHhHH
Q 005969 588 LVREGMELFERMNR 601 (667)
Q Consensus 588 ~~~~A~~~~~~~~~ 601 (667)
++++|.+.+++..+
T Consensus 144 ~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 144 NHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877644
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.61 E-value=0.00035 Score=70.24 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=76.3
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChH
Q 005969 479 SACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQ 555 (667)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~ 555 (667)
..+.+.|++++|.+.+++..+.. |.+...+..+...|.+.|++++|.+.+++.. .| +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566778888888888777764 4457777777777888888888877777665 23 4556777777777778888
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHH--HhccCCHHHHHHHHH
Q 005969 556 RALEKFREMEFLGFKPD-RVALIAVLTA--CRHGGLVREGMELFE 597 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 597 (667)
+|++.+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888887777764 343 3344444444 666777777777776
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.61 E-value=0.00042 Score=54.40 Aligned_cols=93 Identities=9% Similarity=-0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+..+...+.+.|++++|...|++..+.. +-+...+..+..++...|+.++|...+++..+.. |.+...+..+...|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344455556666666666666665532 2244455555555666666666666666655553 324445555555555
Q ss_pred hcCChHHHHHHHHhcC
Q 005969 519 KCGSIGSSVKIFNEMT 534 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~ 534 (667)
..|++++|...+++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00049 Score=68.85 Aligned_cols=94 Identities=12% Similarity=-0.044 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
...|..+..+|.+.|++++|+..+++..+. .| +...|..+..+|...|++++|...|++..+. .+-+...+..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~ 392 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 356777777888888888888888888774 34 4667777788888888888888888877432 233456677777
Q ss_pred HHHhhcCChHHHHH-HHHhC
Q 005969 617 DLLVRYGHLKEAEK-IITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~-~~~~m 635 (667)
.++.+.|+.++|.+ .+.+|
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777776653 44544
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.56 E-value=0.00035 Score=58.44 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 575 ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.|..+..+|.+.|++++|...+++.... -+.+...|..+..++...|++++|.+.+++.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 4555555555666666666666555333 2233445555556666666666666655554
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.52 E-value=0.00027 Score=55.21 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..+..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...+++....
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555666666667777777777776664 33 3556666666677777777777777766544
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.49 E-value=0.00056 Score=66.07 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVV 616 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 616 (667)
...|..+..+|.+.|++++|++.+++..+. .| +...|..+..+|...|++++|...|++..+. .+.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345666666777777777777777777663 34 3556666777777777777777777766433 222344555556
Q ss_pred HHHhhcCChHHHHH
Q 005969 617 DLLVRYGHLKEAEK 630 (667)
Q Consensus 617 ~~~~~~g~~~~A~~ 630 (667)
.++.+.++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555555543
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.44 E-value=0.00064 Score=67.98 Aligned_cols=120 Identities=6% Similarity=-0.083 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPD----------------RVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
..|..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..+++....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35556666677777777777777777663 332 468889999999999999999999999655
Q ss_pred hCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHhh
Q 005969 603 YGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPP-NALIWRTFLEGCQRCRIAKYDTL 662 (667)
Q Consensus 603 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 662 (667)
.+.+...|..+..+|...|++++|.+.|++. .+.| +...+..+...+.+.|+.+.+++
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999988 4555 45677777777888887776654
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.44 E-value=0.034 Score=51.88 Aligned_cols=191 Identities=15% Similarity=0.076 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC-hHHHHHH
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLC--NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS-IGSSVKI 529 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 529 (667)
++++.+++.+.... +-+..+|+.-...+...+ .++.+..+++.+.+.. |.+...|+.-...+...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34444444444421 123333333333333333 2445555555554443 2244444444444444444 3445544
Q ss_pred HHhcCC---CChhhHHHHHHHHHhC--------------CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc-----
Q 005969 530 FNEMTD---RNVITWTALISALGLN--------------GFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG----- 586 (667)
Q Consensus 530 ~~~~~~---~~~~~~~~li~~~~~~--------------~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~----- 586 (667)
++.+.+ .|...|+.....+... +.++++++.+++.... .| |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 444442 1333343333222222 2355666666666653 34 344554444444333
Q ss_pred ------CCHHHHHHHHHHhHHhhCCCCCc-chhHHHHH---HHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 005969 587 ------GLVREGMELFERMNRSYGVEPEM-DHYHCVVD---LLVRYGHLKEAEKIITTMP-FPPN-ALIWRTFLEGC 651 (667)
Q Consensus 587 ------g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~ 651 (667)
+.++++++.++++.+. .|+. ..+..++. .....|..+++.++++++. +.|. .--|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3456666666666433 3332 22222221 1223456666666666663 3443 33334443333
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.0032 Score=50.65 Aligned_cols=110 Identities=12% Similarity=0.018 Sum_probs=62.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCChHH
Q 005969 450 GDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK----CGSIGS 525 (667)
Q Consensus 450 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 525 (667)
+++++|..+|++..+.| .|+.. +-..|...+.+++|.+.+++..+.| ++..+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35666777777776666 33333 4455555566666777777666654 45555666666655 455555
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 005969 526 SVKIFNEMT-DRNVITWTALISALGL----NGFAQRALEKFREMEFLG 568 (667)
Q Consensus 526 A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g 568 (667)
|.+.|+... ..+...+..|...|.. .++.++|.++|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555443 2344445555555554 455555555555555543
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.41 E-value=0.00038 Score=69.98 Aligned_cols=118 Identities=5% Similarity=-0.059 Sum_probs=89.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 005969 443 IAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS 522 (667)
Q Consensus 443 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 522 (667)
...+.+.|++++|.+.+++..+.. +-+...+..+..++.+.|++++|.+.+++..+.. |.+...+..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 345667899999999999988853 3357788888999999999999999999998874 4478888899999999999
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHH--HHhCCChHHHHHHHHH
Q 005969 523 IGSSVKIFNEMT--DR-NVITWTALISA--LGLNGFAQRALEKFRE 563 (667)
Q Consensus 523 ~~~A~~~~~~~~--~~-~~~~~~~li~~--~~~~~~~~~A~~~~~~ 563 (667)
+++|.+.|++.. .| +...+..+..+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999998876 33 34455556555 7778888888888776
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00016 Score=55.70 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-------cc
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE-------MD 610 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~ 610 (667)
...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++... ..|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3456667777777888888888888877742 23466777777788888888888888887742 3444 34
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+..+..++...|+.++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4555666666666666665555554
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.36 E-value=0.00096 Score=54.16 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCC-HhHH----HHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFL-----GFKPD-RVAL----IAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
.|..+..++.+.|++++|+..+++.++. -+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777778888888888888888887772 11665 3466 7788888888888888888887743
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.35 E-value=0.00077 Score=65.06 Aligned_cols=121 Identities=7% Similarity=-0.028 Sum_probs=90.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--------------CCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFL--------------GFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
+..+...+.+.|++++|++.|++..+. ...| +..+|..+..+|.+.|++++|+..+++..+. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 455566666667777777776666541 0233 3568889999999999999999999998543 2
Q ss_pred CCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHhhh
Q 005969 606 EPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPP-NALIWRTFLEGCQRCRIAKYDTLN 663 (667)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 663 (667)
+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+...++.+.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999873 444 577777777778877877777654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00056 Score=65.28 Aligned_cols=144 Identities=10% Similarity=-0.029 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 005969 471 NYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGL 550 (667)
Q Consensus 471 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 550 (667)
...+..+...+.+.|+++.|...|+...+.. | +... +...++.+++...+. ...|..+..+|.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p-~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~ 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--G-DDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--C-HHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--c-cchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHH
Confidence 4556677777888899999999998887763 2 2221 223334444443332 2377888899999
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHH-hhcCChHH
Q 005969 551 NGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEP-EMDHYHCVVDLL-VRYGHLKE 627 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~ 627 (667)
.|++++|+..+++..+. .| +...|..+..+|...|++++|...|++..+. .| +...+..+..+. ...+..++
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999885 45 5678899999999999999999999987433 34 344555555552 34456777
Q ss_pred HHHHHHhC
Q 005969 628 AEKIITTM 635 (667)
Q Consensus 628 A~~~~~~m 635 (667)
+.+.|.+|
T Consensus 318 a~~~~~~~ 325 (338)
T 2if4_A 318 QKEMYKGI 325 (338)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88888877
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.30 E-value=0.0027 Score=52.89 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=28.7
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005969 508 FVCNMLIDMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEF 566 (667)
Q Consensus 508 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 566 (667)
..+..+..+|.+.|++++|...++... .| +...|..+..+|...|++++|+..|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444455555555555555544443 12 333444455555555555555555555544
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00093 Score=51.31 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=72.7
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCC-------HHH
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPN-------ALI 643 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~-------~~~ 643 (667)
+...+..+...+...|++++|.+.+++.... .+.+...+..+..++.+.|++++|.+.+++. ...|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567788899999999999999999999655 3456778899999999999999999999987 45665 566
Q ss_pred HHHHHHHHHhcCChhHHhhhh
Q 005969 644 WRTFLEGCQRCRIAKYDTLNS 664 (667)
Q Consensus 644 ~~~l~~~~~~~~~~~~a~~~~ 664 (667)
+..+..++...|+.+.|....
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 667777777777766665443
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.24 E-value=0.0012 Score=63.07 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYG 518 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (667)
+..+...+.+.|++++|...|++.... .|+... +...++.+.+...+ ....|..+...|.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~~~ 241 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 455566677788888888888887763 344331 11112222211111 1124555555566
Q ss_pred hcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH-HhccCCHHHHH
Q 005969 519 KCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTA-CRHGGLVREGM 593 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~-~~~~g~~~~A~ 593 (667)
+.|++++|...++... .| +...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665544 22 4445556666666666666666666665542 343 2233333333 22344555566
Q ss_pred HHHHHhH
Q 005969 594 ELFERMN 600 (667)
Q Consensus 594 ~~~~~~~ 600 (667)
..|..|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 6666553
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.19 E-value=0.0012 Score=49.65 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 538 VITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 538 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
...+..+...|...|++++|++.|++..+. .| +...|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666666653 33 34456666666666666666666666554
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.15 E-value=0.0032 Score=50.66 Aligned_cols=110 Identities=10% Similarity=-0.053 Sum_probs=84.7
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC-CCChhhHHHHHHHHHh----CCChHHHH
Q 005969 484 LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT-DRNVITWTALISALGL----NGFAQRAL 558 (667)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~ 558 (667)
.++.++|.+.+++..+.+ ++... |...|...+.+++|.+.|+... ..+...+..|...|.. .++.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356788899999988887 23333 7777777788888888888766 4567788888888877 78899999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHh
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRH----GGLVREGMELFERMNRS 602 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 602 (667)
++|++..+.| ++..+..|...|.. .+++++|..++++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999988864 56667777777777 78889999988887433
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.11 E-value=0.043 Score=51.18 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=130.0
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCC----------hhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 005969 447 AHNGDYK-EVLELFKYMRAARIYPDNY-TFVSLLSACSKLCN----------LALGSSLHGLIKKTEIISSDTFVCNMLI 514 (667)
Q Consensus 447 ~~~g~~~-~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 514 (667)
.+.|.++ +|+.+++.+.. +.|+.. .++.--..+...+. ++.+..+++.+.... |.+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 4556654 78999999887 446543 33332222222222 577888888888875 44778888777
Q ss_pred HHHHhcC--ChHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc--
Q 005969 515 DMYGKCG--SIGSSVKIFNEMTD---RNVITWTALISALGLNGF-AQRALEKFREMEFLGFKPDRVALIAVLTACRHG-- 586 (667)
Q Consensus 515 ~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-- 586 (667)
..+...+ .++++..+++.+.+ .|...|+--...+...|. .+++++.++++.+.. +-|...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 7777777 48999999998883 466778777777778888 599999999999863 33566777665555443
Q ss_pred ------------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc-----------CChHHHHHHHHhC-CCCCCHH
Q 005969 587 ------------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY-----------GHLKEAEKIITTM-PFPPNAL 642 (667)
Q Consensus 587 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~ 642 (667)
+.++++++.+...... .|-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 5578899999988665 344555565555555444 4577888888888 356664
Q ss_pred HHH
Q 005969 643 IWR 645 (667)
Q Consensus 643 ~~~ 645 (667)
.|.
T Consensus 272 ~w~ 274 (331)
T 3dss_A 272 KWC 274 (331)
T ss_dssp HHH
T ss_pred chH
Confidence 454
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.07 E-value=0.0053 Score=49.81 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHhccCChhhHHHHHHHHHH
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPD--------N-----YTFVSLLSACSKLCNLALGSSLHGLIKK 499 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 499 (667)
+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..++...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556677788888888888887763 333 1 1444444445555555555555554444
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.06 E-value=0.0044 Score=45.20 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHH
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLL 619 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 619 (667)
.+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 44555556666666666666666666541 223455666666666666666666666666433 122334444444444
Q ss_pred hh
Q 005969 620 VR 621 (667)
Q Consensus 620 ~~ 621 (667)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.06 E-value=0.0027 Score=63.38 Aligned_cols=120 Identities=7% Similarity=-0.115 Sum_probs=69.7
Q ss_pred hccCChhhHHHHHHHHHHh-----CC-CCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC----------CC-hhhHHHH
Q 005969 482 SKLCNLALGSSLHGLIKKT-----EI-ISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD----------RN-VITWTAL 544 (667)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-~~~~~~l 544 (667)
...|++++|..++++..+. |. .|....+++.|..+|...|++++|+.++++..+ |+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666666655554432 11 111234566666666666666666666655441 11 2356677
Q ss_pred HHHHHhCCChHHHHHHHHHHHH-----cCCC-CC-HhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 545 ISALGLNGFAQRALEKFREMEF-----LGFK-PD-RVALIAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~-----~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
...|...|++++|+.++++..+ .|-. |+ ..+...+..++...|.+++|..+++++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776543 2211 22 22455666677777778888888877744
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.06 E-value=0.001 Score=66.37 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=91.3
Q ss_pred HHHHhcCChHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCC---C-HhHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD-------RN----VITWTALISALGLNGFAQRALEKFREMEFL---GFKP---D-RVAL 576 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~p---~-~~~~ 576 (667)
..+...|++++|+.++++..+ ++ ..+++.|...|...|++++|+.++++..+- -+.| + ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999988876651 22 248899999999999999999999997642 1223 3 3488
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHh----hCC-CC-CcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 577 IAVLTACRHGGLVREGMELFERMNRS----YGV-EP-EMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
+.|...|...|++++|..++++...- +|- .| ...+...+..++...|.+++|+.++.++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987432 221 12 2345567777888888999999999887
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.03 E-value=0.0013 Score=51.05 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..+..+...|...|++++|+..|++..+. .| +...|..+..+|...|++++|...|++.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444455555555555555555443 22 2334444555555555555555555544
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.90 E-value=0.0036 Score=48.36 Aligned_cols=97 Identities=7% Similarity=-0.065 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHH
Q 005969 555 QRALEKFREMEFLGFKP-DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIIT 633 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (667)
++|++.|++..+. .| +...+..+...|...|++++|...+++.... .+.+...+..+..++...|++++|.+.++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3577888888874 45 5778899999999999999999999999655 34456788899999999999999999999
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcC
Q 005969 634 TMP----FPPNALIWRTFLEGCQRCR 655 (667)
Q Consensus 634 ~m~----~~p~~~~~~~l~~~~~~~~ 655 (667)
+.. ..++......+...+...+
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 872 2234555555555554443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.81 E-value=0.0037 Score=46.82 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=68.4
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHH
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP----FPPNALIWRTF 647 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l 647 (667)
+...+..+...|...|++++|...|++..+. .+.+...|..+..+|.+.|++++|.+.+++.- ..++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 5678889999999999999999999999665 34456789999999999999999999998872 34666777777
Q ss_pred HHHHHhcCChh
Q 005969 648 LEGCQRCRIAK 658 (667)
Q Consensus 648 ~~~~~~~~~~~ 658 (667)
...+...+...
T Consensus 84 ~~~l~~~~~~~ 94 (100)
T 3ma5_A 84 QDAKLKAEGLE 94 (100)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHccccc
Confidence 77766665543
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.76 E-value=0.046 Score=55.94 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=106.9
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCC----------hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 005969 451 DYKEVLELFKYMRAARIYPD-NYTFVSLLSACSKLCN----------LALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK 519 (667)
Q Consensus 451 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (667)
..++|++.++++... .|+ ...|+.--..+...++ ++++.+.++.+.+.. |.+..+|..-...+.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 345678888888774 344 3345444444444444 677778888777765 4466777777777777
Q ss_pred cC--ChHHHHHHHHhcCC---CChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcc------
Q 005969 520 CG--SIGSSVKIFNEMTD---RNVITWTALISALGLNG-FAQRALEKFREMEFLGFKP-DRVALIAVLTACRHG------ 586 (667)
Q Consensus 520 ~~--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~------ 586 (667)
.+ +++++.+.++.+.+ .|...|+.-...+...| ..+++++.++++.+. .| |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccc
Confidence 77 56888888877763 35566776666666777 677888888877764 34 455666655554432
Q ss_pred --------CCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChH
Q 005969 587 --------GLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLK 626 (667)
Q Consensus 587 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (667)
+.++++.+.+++.... .+-+...|..+...+.+.++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4567777777776544 3444556666666666666533
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.65 E-value=0.0033 Score=50.89 Aligned_cols=93 Identities=12% Similarity=-0.056 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh----------HHHHHHHHhcC--CC-ChhhHHHHHHHHHhC-
Q 005969 486 NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSI----------GSSVKIFNEMT--DR-NVITWTALISALGLN- 551 (667)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~--~~-~~~~~~~li~~~~~~- 551 (667)
.+++|.+.++...+.. |.+...+..+..++...+++ ++|+..|++.. +| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444444444444443 33444554444444444432 35555555443 23 233455555555444
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 552 ----------GFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 552 ----------~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
|++++|++.|++..+ +.|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 367777777777777 46766655554443
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.57 E-value=0.028 Score=40.74 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMY 517 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (667)
.+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+.. |.+...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 44555566666777777777777766542 2345566666666677777777777777666653 33455555555444
Q ss_pred Hh
Q 005969 518 GK 519 (667)
Q Consensus 518 ~~ 519 (667)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.55 E-value=0.1 Score=48.87 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCcchHHHHHHHHH--HcC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 005969 434 PDIVSWNIVIAACA--HNG---DYKEVLELFKYMRAARIYPDN-YTFVSLLSA 480 (667)
Q Consensus 434 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 480 (667)
.+...|...+.+.. ..+ +..+|..+|++..+. .|+. ..+..+..+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a 242 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALV 242 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45566666665543 223 346788888888774 4653 344433333
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.40 E-value=0.075 Score=54.35 Aligned_cols=169 Identities=10% Similarity=-0.016 Sum_probs=125.7
Q ss_pred CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC----------hHHHHHHHHhcCC---CChhhHHHHHHHHHhC
Q 005969 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGS----------IGSSVKIFNEMTD---RNVITWTALISALGLN 551 (667)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 551 (667)
...++|.+.++.+.+.+ |.+...|+.--..+...|+ ++++.+.++.+.+ .+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34567889999998886 4466777766666666666 8999999998873 3667888888888888
Q ss_pred C--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhc------
Q 005969 552 G--FAQRALEKFREMEFLGFKPDRVALIAVLTACRHGG-LVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRY------ 622 (667)
Q Consensus 552 ~--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 622 (667)
+ +++++++.++++.+.. +-|...|+.-...+.+.| .++++++.++++++. -+-+...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccc
Confidence 9 6799999999999963 336778888888888888 899999999988554 344556676666666553
Q ss_pred --------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChh
Q 005969 623 --------GHLKEAEKIITTM-PF-PPNALIWRTFLEGCQRCRIAK 658 (667)
Q Consensus 623 --------g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~ 658 (667)
+.+++|.+.+++. .. +-+...|.-+-..+...++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 5578888888776 23 346778887777777666533
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.28 E-value=0.18 Score=54.62 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=46.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCCh
Q 005969 475 VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFA 554 (667)
Q Consensus 475 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 554 (667)
..++..+.+.|..+.|.++.+. +. .-.......|++++|.++.+.+. +...|..+...+.+.+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~----------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD----------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC----------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCChHHheecCCC----------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCH
Confidence 5555556666666666654421 11 11233455677777777766553 446677777777777777
Q ss_pred HHHHHHHHHHHH
Q 005969 555 QRALEKFREMEF 566 (667)
Q Consensus 555 ~~A~~~~~~~~~ 566 (667)
+.|.+.|.++.+
T Consensus 698 ~~A~~~y~~~~d 709 (814)
T 3mkq_A 698 KLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHccC
Confidence 777777776543
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.24 E-value=0.0041 Score=50.34 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=57.7
Q ss_pred HhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCCh----------HHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 005969 518 GKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFA----------QRALEKFREMEFLGFKPD-RVALIAVLTAC 583 (667)
Q Consensus 518 ~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~----------~~A~~~~~~~~~~g~~p~-~~~~~~li~~~ 583 (667)
.+.+.+++|.+.++... .| +...|..+..++...+++ ++|+..|++.++ +.|+ ...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 34455677777776655 33 555666666666666553 477777777777 3554 45677777777
Q ss_pred hccC-----------CHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 005969 584 RHGG-----------LVREGMELFERMNRSYGVEPEMDHYHCVVD 617 (667)
Q Consensus 584 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 617 (667)
...| ++++|.+.|++..+ +.|+...|..-+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 6653 67777777776643 3555554443333
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.3 Score=52.92 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 377 GSLMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
..++..+.+.|..++|+++.+. -..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QDQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HHHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cchheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHH
Confidence 4666677777888887764431 1222344566778888877776663 4567788888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHh
Q 005969 457 ELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNE 532 (667)
Q Consensus 457 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 532 (667)
+.|.++.+ |..+...+...++.+...++.+.....| -++.....|.+.|++++|.+++.+
T Consensus 702 ~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 702 EAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877643 3344445555666666555555555443 123334445556666666655444
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.03 E-value=0.099 Score=49.03 Aligned_cols=129 Identities=10% Similarity=0.033 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHhc-----cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh---cC-C----h---HHHHHHH
Q 005969 467 IYPDNYTFVSLLSACSK-----LCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGK---CG-S----I---GSSVKIF 530 (667)
Q Consensus 467 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~----~---~~A~~~~ 530 (667)
.+.+...|...+++... ..+..+|..+|+++.+.. |.....+..+..+|.. .+ . . ..+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45566777777766432 234577888888888874 4344555544444431 00 0 0 1111111
Q ss_pred HhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 531 NEMT--DRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 531 ~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..+. ..+...|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111 234455555555555556666666666666664 355555555555566666666666666655
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.94 E-value=0.021 Score=55.92 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=57.3
Q ss_pred hCCChHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHh----hC-CCCC-cchhHHHH
Q 005969 550 LNGFAQRALEKFREMEFL---GFKPD----RVALIAVLTACRHGGLVREGMELFERMNRS----YG-VEPE-MDHYHCVV 616 (667)
Q Consensus 550 ~~~~~~~A~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~-~~~~~~l~ 616 (667)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++...- +| ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777776541 12232 246778888888888888888888776432 11 1222 24578888
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 005969 617 DLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~m 635 (667)
..|...|++++|..++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 8888888888888887765
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.79 E-value=0.46 Score=36.48 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 005969 539 ITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGV 605 (667)
Q Consensus 539 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (667)
..++..+..+..+|+-+.-.+++..+... .+|++...--+..+|.+.|+..+|.+++.+..++ |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34555667777777777777777775332 4677777777777888888888888777777444 54
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.73 E-value=0.039 Score=40.85 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHh-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKP-DRV-ALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
...+...|++++|++.+++..+. .| +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677777777777777774 34 345 6777777777777888887777777544
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.60 E-value=0.037 Score=54.24 Aligned_cols=91 Identities=18% Similarity=0.069 Sum_probs=63.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC---CCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhh--CCCC---C-cch
Q 005969 545 ISALGLNGFAQRALEKFREMEFLG---FKPD----RVALIAVLTACRHGGLVREGMELFERMNRSY--GVEP---E-MDH 611 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~-~~~ 611 (667)
+..+...|++++|++++++..+.. +.|+ ..+++.|..+|...|++++|..++++...-+ -+.| + ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888877531 2333 3477888888888888888888888764321 1122 2 255
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhC
Q 005969 612 YHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
++.|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788888899999999988888776
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.37 Score=39.58 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=90.3
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHH
Q 005969 479 SACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRAL 558 (667)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 558 (667)
....+.|+++.|.++.+.+ . +...|..|.+.....|+++-|++.|+...+ +..+.--|...|+.++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------N-DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHH
Confidence 3455678999998887654 2 678999999999999999999999998775 444555566677877766
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHh-hcCChHHHHHHHHhCC
Q 005969 559 EKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLV-RYGHLKEAEKIITTMP 636 (667)
Q Consensus 559 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 636 (667)
++-+.....| -++.....+...|+++++.++|.+. |-.|. ...++ ..|..+.|.++.++++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~e-------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPL-------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHH-------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHH-------HHHHHHHcCcHHHHHHHHHHhC
Confidence 6666655544 2455555667789999999998765 22221 11222 3567788888888875
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.41 E-value=0.53 Score=36.17 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=88.6
Q ss_pred HhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhcCChh
Q 005969 117 GKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLV---ANSLVNMYFQCAGIW 193 (667)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 193 (667)
.-.|..++..+++.+.... .+..-||-+|.-....-+-+...++++.+-+ -.|... ...++..|++.|
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n--- 88 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINN--- 88 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTT---
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhc---
Confidence 4457777777777776553 2344455555444444444544554444322 112111 123344444433
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 005969 194 SAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNAL 273 (667)
Q Consensus 194 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 273 (667)
.+....+..+..+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 -----------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 89 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -----------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3555677788889999999999999888543 3578888888888899999999999999999988886
Q ss_pred C
Q 005969 274 E 274 (667)
Q Consensus 274 ~ 274 (667)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.35 E-value=0.029 Score=54.92 Aligned_cols=60 Identities=5% Similarity=-0.132 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH-----cC-CCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 540 TWTALISALGLNGFAQRALEKFREMEF-----LG-FKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 540 ~~~~li~~~~~~~~~~~A~~~~~~~~~-----~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.|...|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444455544444444432 11 1122 224555555555555555555555554
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.20 E-value=0.043 Score=53.75 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=60.8
Q ss_pred HHHHhcCChHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc-----C-CCCC-HhHH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTD-------RN----VITWTALISALGLNGFAQRALEKFREMEFL-----G-FKPD-RVAL 576 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~p~-~~~~ 576 (667)
..+...|++++|+.++++..+ |+ ..+++.+...|...|++++|+.++++...- | -.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456677777777665431 21 246778888888888888888888877642 2 1222 3478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 005969 577 IAVLTACRHGGLVREGMELFERMNR 601 (667)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~ 601 (667)
+.|...|...|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8899999999999999999887643
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.94 E-value=1.2 Score=36.70 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=51.7
Q ss_pred cCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005969 418 TGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLI 497 (667)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 497 (667)
.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+....+-+..
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444433 3455666677777777777777766666543 233444444555555555444444
Q ss_pred HHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcC
Q 005969 498 KKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMT 534 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 534 (667)
...| -++.....+...|+++++.++|.+..
T Consensus 87 ~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 87 QTRE-------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4433 12333444445566666666655544
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.89 E-value=0.12 Score=41.31 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC---CHHHHHHHHHHhHHhhCCCC--CcchhHHHHHHHhhcCChHHHH
Q 005969 555 QRALEKFREMEFLGFKPDRVALIAVLTACRHGG---LVREGMELFERMNRSYGVEP--EMDHYHCVVDLLVRYGHLKEAE 629 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 629 (667)
..+.+-|.+..+.| .++..+...+.+++++++ +.+++..++++..+. . .| ....+-.|.-++.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555554544 255556666666666666 445666666666544 2 23 2344555666666666666666
Q ss_pred HHHHhC-CCCCCH
Q 005969 630 KIITTM-PFPPNA 641 (667)
Q Consensus 630 ~~~~~m-~~~p~~ 641 (667)
+.++.+ .+.|+.
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 666666 244543
No 225
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.58 E-value=2.7 Score=38.48 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=116.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHH
Q 005969 379 LMTSYAKSGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLEL 458 (667)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 458 (667)
-+......|++-+|.+. |..+..-|.+++++++|++++..- ...+.+.|+...|-++
T Consensus 19 rl~~~I~~G~yYEAhQ~------------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DL 75 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQT------------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDL 75 (312)
T ss_dssp HHHHHHHHTCHHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhccChHHHHHH------------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 34556677889999884 446777788888999988876542 3455677887766654
Q ss_pred ----HHHHHHcCCCCCHHHHHHHHHHHhccCCh-----hhHHHHHHHHHHhCC-CCCchhHHhHHHHHHHhcCChHHHHH
Q 005969 459 ----FKYMRAARIYPDNYTFVSLLSACSKLCNL-----ALGSSLHGLIKKTEI-ISSDTFVCNMLIDMYGKCGSIGSSVK 528 (667)
Q Consensus 459 ----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 528 (667)
++-..+.+++++......++..+...... .-..+....-.+.|. ...++.....+...|.+.+++.+|+.
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 55566778999998888888887653321 222233333333332 22378889999999999999999998
Q ss_pred HHHhcCCCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005969 529 IFNEMTDRNVITWTALISALGLN---GFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRS 602 (667)
Q Consensus 529 ~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (667)
.|-.-...+...+..++.-+... |...++--+ . ...+--|.-.|+...|..+++...+.
T Consensus 156 H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~-~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 156 YFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------F-SRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------H-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------H-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77633322344444444333332 322222111 1 11222345667888888888877544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.29 E-value=0.3 Score=35.48 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 554 AQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
.++|..++++..+. .|+ ......+...+.+.|++++|...|+++
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555554442 332 234444444444555555555555554
No 227
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.16 E-value=3.3 Score=37.86 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=100.7
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCcCChhhHHHHHHHhccc
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFL----FCELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
.++..=|.+++++++|++++.. -...+.+.|+...|.++ ++-+.+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3444456777888888887532 34456677887766664 55566778899988888887776553
Q ss_pred C-----chHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHcc---CChh
Q 005969 155 Q-----DLEFGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAES---ENFG 224 (667)
Q Consensus 155 ~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~~ 224 (667)
. ..+-......+-.+.| ...|+..+..+...|.+.|++.+|+.-|-.....|...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 2 2233444444444443 2357888999999999999999998877643322444555555444443 4333
Q ss_pred HHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHH
Q 005969 225 KALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIK 270 (667)
Q Consensus 225 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 270 (667)
++--.+. ..++ .+.-.|++..|..+++...+
T Consensus 186 e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 186 TVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3211111 1122 23345778888877776543
No 228
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.02 E-value=0.48 Score=34.64 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005969 442 VIAACAHNGDYKEVLELFKYMRAARIYPDNY-TFVSLLSACSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 442 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (667)
....+...|++++|...+++..+.. +.+.. .+..+..++...|+++.|...++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667888888888888887753 23455 77777778888888888888888888775
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.92 E-value=0.23 Score=36.07 Aligned_cols=73 Identities=12% Similarity=-0.120 Sum_probs=55.3
Q ss_pred CCCHhHHHHHHHHHhccCC---HHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 005969 570 KPDRVALIAVLTACRHGGL---VREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALIWR 645 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 645 (667)
+.|+..+..+..++...++ .++|..++++.... -+-++.....+...+.+.|++++|.+.|+++ ...|+ ..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 4466777788887764444 79999999998555 3445577788899999999999999999998 35565 4444
No 230
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.60 E-value=4.4 Score=37.34 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=100.6
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCcCChhhHHHHHHHhccc
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLF----CELVRSEVALTESSFVGVIHGLSNE 154 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~li~~~~~~ 154 (667)
.++..=|.+.+++++|++++-. -...+.+.|+...+.++. +-+.+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444557788899999887532 244566778877666654 5556788899998888888777755
Q ss_pred Cch-----HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHH
Q 005969 155 QDL-----EFGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKAL 227 (667)
Q Consensus 155 ~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 227 (667)
..- .-..+.+.+-.+.| ..-|+.....+...|.+.+++.+|+.-|-....+....|..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~- 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA- 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH-
Confidence 431 22333334444444 3457888889999999999999998887533333335555555444443332222
Q ss_pred HHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHH
Q 005969 228 ELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIK 270 (667)
Q Consensus 228 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 270 (667)
|...-..++ .+.-.+++..|..+++...+
T Consensus 187 -------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 -------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111112222 24445677777777666554
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.41 E-value=0.7 Score=41.48 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-----CChHHHHHHHHhcC--CC--ChhhHHHHHHHHHhC-CChHHH
Q 005969 488 ALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-----GSIGSSVKIFNEMT--DR--NVITWTALISALGLN-GFAQRA 557 (667)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~--~~--~~~~~~~li~~~~~~-~~~~~A 557 (667)
..|...+++..+....-.+...|..|...|... |+.++|.+.|++.. .| +..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 444555555555532111344666666666663 66666666666655 34 255555666666663 667777
Q ss_pred HHHHHHHHHcCCC
Q 005969 558 LEKFREMEFLGFK 570 (667)
Q Consensus 558 ~~~~~~~~~~g~~ 570 (667)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777776664333
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.22 E-value=0.54 Score=35.01 Aligned_cols=60 Identities=8% Similarity=-0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFLG------FKPDRVALIAVLTACRHGGLVREGMELFERMN 600 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (667)
+..|...+...|+++.|...|++..+.- -.+....+..|..++.+.|+++.|..++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3345555666666666666666655421 01234456666666666666666666666663
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.21 E-value=0.3 Score=36.42 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhC-----CCCCcchhHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 005969 572 DRVALIAVLTACRHGGLVREGMELFERMNRSYG-----VEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP-FPPNA 641 (667)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~p~~ 641 (667)
+..-+..|...+.+.|+++.|..+++...+... -.+...++..|..++.+.|++++|...+++.. +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 445566788899999999999999999866531 12345678999999999999999999999883 56654
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.07 E-value=0.49 Score=37.80 Aligned_cols=81 Identities=10% Similarity=-0.068 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 005969 453 KEVLELFKYMRAARIYPDNYTFVSLLSACSKLC---NLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKI 529 (667)
Q Consensus 453 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 529 (667)
..+.+-|.+..+.| .++..+.-.+..++++.+ +.+++..+++.+.+..........+-.|.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555544 356666666666666666 44567777776666541000233333344444444444444444
Q ss_pred HHhcC
Q 005969 530 FNEMT 534 (667)
Q Consensus 530 ~~~~~ 534 (667)
++.+.
T Consensus 94 ~~~lL 98 (152)
T 1pc2_A 94 VRGLL 98 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.49 E-value=6.5 Score=36.25 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=88.6
Q ss_pred HHHHHhhCCH---HHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHH
Q 005969 380 MTSYAKSGLI---SDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVL 456 (667)
Q Consensus 380 ~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 456 (667)
+......|++ -+|.+. |..+..-|.+++++++|++++..- ...+.+.|+...|-
T Consensus 19 l~~~I~~G~y~~~YEAHQ~------------~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQE------------TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHH
T ss_pred HHHHHhCCCCccccHHHHH------------HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHH
Confidence 4556677888 788884 445677788889999998876542 34556677776655
Q ss_pred HHH----HHHHHcCCCCCHHHHHHHHHHHhccCChhh-HHHHH----HHHHHhC-CCCCchhHHhHHHHHHHhcCChHHH
Q 005969 457 ELF----KYMRAARIYPDNYTFVSLLSACSKLCNLAL-GSSLH----GLIKKTE-IISSDTFVCNMLIDMYGKCGSIGSS 526 (667)
Q Consensus 457 ~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~----~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A 526 (667)
++- +-..+.++++|..+...++..+......+- =..+. ..-.+.| ...-++.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 554 556677899999888888888776553221 12222 2333333 1223788888999999999999999
Q ss_pred HHHHH
Q 005969 527 VKIFN 531 (667)
Q Consensus 527 ~~~~~ 531 (667)
+..|-
T Consensus 156 e~H~i 160 (336)
T 3lpz_A 156 EKHLV 160 (336)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88874
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.10 E-value=15 Score=39.47 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=68.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 005969 444 AACAHNGDYKEVLELFKYMRAARIYPDNYTF--VSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCG 521 (667)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 521 (667)
-++...|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+..... . +......+.-++...|
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d-~VRraAViaLGlI~~g 608 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-D-DVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-H-HHHHHHHHHHHHHTSS
T ss_pred HHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-H-HHHHHHHHHHHhhccC
Confidence 33446678888888888777631 2222211 1233457777888777778887776531 1 2333333333444456
Q ss_pred ChHHHHHHHHhcC---CCChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCCHhHH
Q 005969 522 SIGSSVKIFNEMT---DRNVITWTALISALGLNGFA-QRALEKFREMEFLGFKPDRVAL 576 (667)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~g~~p~~~~~ 576 (667)
+.+.+.++++.+. +|.+..-..+.-+....|+. .+++.++..+.. .+|..+-
T Consensus 609 ~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 6666667766544 23333333334444444443 567777777765 4454433
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.92 E-value=1.1 Score=34.29 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHH---HHHHHHHhHHhhCCCC--CcchhHHHHHHHhhcCChHH
Q 005969 553 FAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVRE---GMELFERMNRSYGVEP--EMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 553 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 627 (667)
.+..+.+-|.+....| .|+..+-..+.+++.++..... ++.+++++.+. + .| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555555555544 3666666667777777766555 66777766443 2 12 23344556666777777777
Q ss_pred HHHHHHhC-CCCC
Q 005969 628 AEKIITTM-PFPP 639 (667)
Q Consensus 628 A~~~~~~m-~~~p 639 (667)
|.+.++.+ ...|
T Consensus 93 A~~~~~~lL~~eP 105 (126)
T 1nzn_A 93 ALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 77777776 2444
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.92 E-value=1.5 Score=39.36 Aligned_cols=80 Identities=5% Similarity=-0.018 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhc-CC
Q 005969 452 YKEVLELFKYMRAARIYPD---NYTFVSLLSACSKL-----CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKC-GS 522 (667)
Q Consensus 452 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 522 (667)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+... +..++....+.+++. |+
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCC
Confidence 3456666666666 4565 45677777777773 78888888888888876322 366777777777774 78
Q ss_pred hHHHHHHHHhcC
Q 005969 523 IGSSVKIFNEMT 534 (667)
Q Consensus 523 ~~~A~~~~~~~~ 534 (667)
.+++.+.+++..
T Consensus 256 ~~~a~~~L~kAL 267 (301)
T 3u64_A 256 RAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.64 E-value=17 Score=37.31 Aligned_cols=450 Identities=9% Similarity=-0.044 Sum_probs=216.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCccchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHH
Q 005969 16 YSRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSLNPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEV 94 (667)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..+.|++..+..+...+...-+. .-..|..+.. +...... ++..-+.+..+.+.....-..-+..+++.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLMNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGGGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 44568888777776666443222 2235555544 3332333 33333444332344444455667778889999999
Q ss_pred HHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCC
Q 005969 95 VSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDY 174 (667)
Q Consensus 95 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 174 (667)
..++.. +..+...-.....+....|+..+|......+-..|. ..+.....++..+ .+.|.-.
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~----------------~~~g~lt 153 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVW----------------RASGKQD 153 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHH----------------HHTTCSC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHH----------------HHCCCCC
Confidence 998877 433444445567778888998888888888766553 2333444444444 4333322
Q ss_pred chHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHH---HHHH
Q 005969 175 ELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVY---VINS 251 (667)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~ 251 (667)
+...+.. +......|+...|..+...+..........++.... ++..+...... +.|+...-.. .+.-
T Consensus 154 ~~~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 154 PLAYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFAS 224 (618)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHH
Confidence 2233333 344556677778877777664222122233332222 22333332221 1222221111 1222
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCC-ChHHHHHH
Q 005969 252 CAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKS-SPTSIFLL 330 (667)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~ 330 (667)
+.+ .+.+.|...+....+... .+......+ +..+.......+ +.++...+
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~---------------------------~~~ia~~~~~~~~~~~~~~~~ 275 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQ-LNEDQIQEL---------------------------RDIVAWRLMGNDVTDEQAKWR 275 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHH---------------------------HHHHHHTSCSTTCCHHHHHHH
T ss_pred HHh-cCHHHHHHHHHhhhhccC-CCHHHHHHH---------------------------HHHHHHHHHHcCCChHHHHHH
Confidence 222 245556555555543321 111111111 111111122223 22233333
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCC--Ccchh
Q 005969 331 IELLQLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPR--AVVPA 408 (667)
Q Consensus 331 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 408 (667)
....... ++.... .-.+....+.|+++.|...|+.+...+ .....
T Consensus 276 ~~~~~~~--~~~~~~-------------------------------e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 276 DDAIMRS--QSTSLI-------------------------------ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp HHHHHTC--CCHHHH-------------------------------HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred HhccccC--CChHHH-------------------------------HHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 3322111 111111 122223345688888888888774332 22223
Q ss_pred HHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHH---HHHHHHHHHh
Q 005969 409 NIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLELFKYMRAARIYP---DNY---TFVSLLSACS 482 (667)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~---~~~~ll~~~~ 482 (667)
--+..++...|+.++|..+|..+.++. ..|. ++.+ .+.|..... . . ..+.+ ... .-..-+..+.
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg-~lAa-~~Lg~~~~~-~----~--~~~~~~~~~~~~~~~~~~r~~~L~ 392 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQQR-GFYP-MVAA-QRIGEEYEL-K----I--DKAPQNVDSALTQGPEMARVRELM 392 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHH-HHHH-HHTTCCCCC-C----C--CCCCSCCCCHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHH-HHHH-HHcCCCCCC-C----C--CCCChhHHhhhccChHHHHHHHHH
Confidence 456667777788888888888777642 2333 3221 222321000 0 0 00111 000 1112233455
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCC------hhhHHHHHHHHHhCCChHH
Q 005969 483 KLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRN------VITWTALISALGLNGFAQR 556 (667)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~ 556 (667)
..|....|...+..+.+.. +......+.......|..+.+..........+ +..|..++..+.+.-.++.
T Consensus 393 ~~g~~~~a~~ew~~~~~~~----~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~ 468 (618)
T 1qsa_A 393 YWNLDNTARSEWANLVKSK----SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQ 468 (618)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCH
T ss_pred HCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCH
Confidence 6777888877777766532 33333445555566777777666555444322 1245556666666555555
Q ss_pred HHHHHHHHHHcCCCCC
Q 005969 557 ALEKFREMEFLGFKPD 572 (667)
Q Consensus 557 A~~~~~~~~~~g~~p~ 572 (667)
.+-.---..+.++.|+
T Consensus 469 ~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 469 SYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCCCCCC
Confidence 5444333445555554
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.93 E-value=1.8 Score=34.93 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.4
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhCCC
Q 005969 610 DHYHCVVDLLVRYGHLKEAEKIITTMPF 637 (667)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 637 (667)
+.--.+..+|.+.|++++|+.+++.++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 4445688899999999999999999973
No 241
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.75 E-value=3.2 Score=29.75 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=63.4
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|.-|-+.+...+ . ...+-..-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+.+..-+.++.
T Consensus 21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 5667777777777666 2 44444444567889999999999999999999999987755 57788888888887887
Q ss_pred HCCCcCChhhHH
Q 005969 134 RSEVALTESSFV 145 (667)
Q Consensus 134 ~~~~~~~~~~~~ 145 (667)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 34444443
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.84 E-value=3.4 Score=29.65 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 54 NPVEGAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
..++|.-|-+.+...+ . ...+-..-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+.+..-+.++.
T Consensus 22 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 5667777777777666 2 44444444567889999999999999999999999987755 46788888887777777
Q ss_pred HCCCcCChhhH
Q 005969 134 RSEVALTESSF 144 (667)
Q Consensus 134 ~~~~~~~~~~~ 144 (667)
.+| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 3444444
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.79 E-value=13 Score=36.38 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhHHh-hCCCCCc----c
Q 005969 541 WTALISALGLNGFAQRALEKFREMEFL--GFKPD---RVALIAVLTACRHGGLVREGMELFERMNRS-YGVEPEM----D 610 (667)
Q Consensus 541 ~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~ 610 (667)
...|...+...|++.+|.+++.++... |..+. ...+..-++.|...+++..|..++.++... +...+++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777788888888888877542 22211 225566677777888888888888776321 1122221 3
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 611 HYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
.+...+..+...+++.+|-+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556666677777777776665554
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.49 E-value=2.3 Score=44.44 Aligned_cols=53 Identities=13% Similarity=-0.071 Sum_probs=42.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
..-|...|+++-|+++.++.... .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566788888899988888884 665 558888999999999999998888876
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.07 E-value=2.6 Score=32.31 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=16.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005969 544 LISALGLNGFAQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 544 li~~~~~~~~~~~A~~~~~~~~~~g~~p~ 572 (667)
|.-++.+.|++++|.+.++.+.+ +.|+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 44555666666666666666666 3553
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.35 E-value=9.5 Score=30.20 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=45.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 005969 449 NGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLID 515 (667)
Q Consensus 449 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (667)
.+++++|.++|+.+++.+-+- ...+.....--.+.|++..|.+++......+..| ...+...+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~--~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP--LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC--HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc--HHHHHHHHH
Confidence 478899999999887653333 5566666666678899999999999988877443 444444443
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.05 E-value=4.5 Score=29.25 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
.-+..+-++.+....+.|++......+++|.+..|+..|..+++-++.+ ..+...+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 3345555666666677888888888888888888888888888887544 33335566666554
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.79 E-value=3.7 Score=39.44 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCCcchhHH
Q 005969 542 TALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNR----SYGVEPEMDHYHC 614 (667)
Q Consensus 542 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~ 614 (667)
..++..+...|+.++|+..++.+... -+-+...+..++.++.+.|+..+|++.|+++.+ ..|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34566677788888888888777764 133666888888888888888888888877633 4588887765433
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.38 E-value=18 Score=35.45 Aligned_cols=162 Identities=6% Similarity=0.026 Sum_probs=84.6
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHhcCChhHHHHhhccCC-----C---CC--chh
Q 005969 145 VGVIHGLSNEQDLEFGEQIHGLVIKNGFDYE-----LLVANSLVNMYFQCAGIWSAEKMFKDVE-----I---RD--VVS 209 (667)
Q Consensus 145 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~--~~~ 209 (667)
..|...+...|++.+|..++..+...-...+ ...+...+..|...+++..|..+++++. . |+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3455666667777777777777654322211 3456666777777777777776666542 1 11 124
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhHhC-CcCCChhhHHH----HHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHH
Q 005969 210 WNTIIGALAESENFGKALELYLRMSVD-IVFPNQTTFVY----VINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALV 284 (667)
Q Consensus 210 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (667)
|...+..+...+++.+|...|.+.... .+.-|...+.. ++.+..-.+....-..++....+...-++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 555666667777887777766665432 11122222211 1111111122222223333333333334556677777
Q ss_pred HHHHhc--CChHHHHHHHhccCCC
Q 005969 285 DFYAKC--DNLEGAHLCFSEISNK 306 (667)
Q Consensus 285 ~~~~~~--g~~~~a~~~~~~~~~~ 306 (667)
.+|... .+++...+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 777653 4566666766665443
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.06 E-value=9.7 Score=30.15 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCch
Q 005969 221 ENFGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVF 278 (667)
Q Consensus 221 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 278 (667)
++.++|.++|+.+...+-+. ...|.....--.+.|++..|.+++......+..|...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 67777777777776542222 3333333333567788888888888888777665433
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.80 E-value=7.6 Score=43.61 Aligned_cols=162 Identities=10% Similarity=-0.008 Sum_probs=88.2
Q ss_pred hhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchH
Q 005969 79 TALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLE 158 (667)
Q Consensus 79 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 158 (667)
..++..+.+.|..+.|.++....++ +...--.+..++...|++++|.++|.+... |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3456667777888888777665554 333334456678888999999999977532 221111100 0000
Q ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHhhcc----CCCCC----chhHHHHHHHHHccCChhHHHH
Q 005969 159 FGEQIHGLVIKNG--FDYELLVANSLVNMYFQCAGIWSAEKMFKD----VEIRD----VVSWNTIIGALAESENFGKALE 228 (667)
Q Consensus 159 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~~~~~~a~~ 228 (667)
. +..+.... ...-..-|..++..+.+.|.++.+.++-+. ....+ ...|..+.+++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 11111111 011223456666666666666665444322 11111 1247777888888888888888
Q ss_pred HHHHhHhCCcCCChhhHHHHHHHhhccCCh
Q 005969 229 LYLRMSVDIVFPNQTTFVYVINSCAGLQNS 258 (667)
Q Consensus 229 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 258 (667)
.+-.+..... -...+..++..++..|..
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 8877765533 244556666665555543
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.63 E-value=7.4 Score=28.17 Aligned_cols=63 Identities=8% Similarity=-0.063 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVN 184 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (667)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++..-- ....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 3445666677777778888888888888888888888888888888776542 22445555443
No 253
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.37 E-value=17 Score=30.52 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=37.2
Q ss_pred CCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHh
Q 005969 72 CADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGL 151 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 151 (667)
.+|..+-...+..+.+.|..+....+++.+..++...-...+.++...|..+. ...+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 34455555555555555554444444444445555444445555555554332 222222322 13444444444444
Q ss_pred cccCc
Q 005969 152 SNEQD 156 (667)
Q Consensus 152 ~~~~~ 156 (667)
...++
T Consensus 101 ~~~~~ 105 (201)
T 3ltj_A 101 GQIGD 105 (201)
T ss_dssp HHHCC
T ss_pred HHhCc
Confidence 44443
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.33 E-value=8.8 Score=40.19 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=47.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhCC
Q 005969 580 LTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTMP 636 (667)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 636 (667)
.+.|...|+++-|+++-++.+.. .+-+..+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44567899999999999988655 45557899999999999999999999999997
No 255
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.31 E-value=20 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=22.3
Q ss_pred CChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCC
Q 005969 73 ADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGF 121 (667)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 121 (667)
++..+-...+..+++.|..+....+.+.+..++...-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444555555554444444444444444444444444444443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.70 E-value=9.5 Score=29.32 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 005969 556 RALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDL 618 (667)
Q Consensus 556 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (667)
+..+-++.+....+.|++......+++|-+..|+..|..+++-++.+ ..+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 44555556666677888888888888888888888888888888544 44445667666654
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.42 E-value=15 Score=32.88 Aligned_cols=210 Identities=10% Similarity=-0.088 Sum_probs=92.9
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhh--HHHHHHHhccc
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV---TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESS--FVGVIHGLSNE 154 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 154 (667)
..+...++.|+.+.+..+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3444555666666666666554332211 1112333344455543 3334444454433211 11222333334
Q ss_pred CchHHHHHHHHHHHHhcCCCchHH--HHHHHHHHHhcCChhHHHHhhccCCCCCch------------hHHHHHHHHHcc
Q 005969 155 QDLEFGEQIHGLVIKNGFDYELLV--ANSLVNMYFQCAGIWSAEKMFKDVEIRDVV------------SWNTIIGALAES 220 (667)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~ 220 (667)
|+.+ +++.+.+.|..++... -...+...+..|+.+-...+++....++.. .-...+...+..
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 4443 3334444454333111 112233345566666666666554332211 011233344455
Q ss_pred CChhHHHHHHHHhHhCCcCCCh---hhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCChHH
Q 005969 221 ENFGKALELYLRMSVDIVFPNQ---TTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFV--GSALVDFYAKCDNLEG 295 (667)
Q Consensus 221 ~~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 295 (667)
|+.+-+..+++. .|..++. ...+.+ ...+..++......+.+.+.+.|..++... ..+.+...++.|+.+-
T Consensus 159 ~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 159 GHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp TCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 665544443332 1333322 122222 223334555555667777777776655431 2234445556677776
Q ss_pred HHHHHh
Q 005969 296 AHLCFS 301 (667)
Q Consensus 296 a~~~~~ 301 (667)
+..+++
T Consensus 235 v~~Ll~ 240 (285)
T 1wdy_A 235 VQRLLE 240 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.40 E-value=13 Score=26.78 Aligned_cols=78 Identities=6% Similarity=-0.159 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 156 DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
.-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|.-+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555443 22333334456677899999999999999999999887765 477777888777777776
Q ss_pred CC
Q 005969 236 DI 237 (667)
Q Consensus 236 ~g 237 (667)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.79 E-value=13 Score=26.70 Aligned_cols=78 Identities=13% Similarity=-0.041 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHh
Q 005969 156 DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSV 235 (667)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 235 (667)
.-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|.-+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554442 22233333455667889999999988888888888877765 456777777776766665
Q ss_pred CC
Q 005969 236 DI 237 (667)
Q Consensus 236 ~g 237 (667)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.97 E-value=7.1 Score=31.51 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=39.2
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCc----hhHhHhhc-----cCCccchhhHHHHHHHHH
Q 005969 2 PDRNVVSFNSIISAYSRCGYVEDALRMFLYMINR-GFEPTQ----FTFGGLLS-----CDSLNPVEGAQLQASVLK 67 (667)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~----~~~~~ll~-----~~~~~~~~a~~~~~~~~~ 67 (667)
|+.+-+.+-.-+..+...|.++.|+-+.+.+... +..|+. .-|..++. +.++++..|...+++.+.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 6777788888889999999999999888887653 123332 11222221 444467777777776543
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.59 E-value=72 Score=34.37 Aligned_cols=263 Identities=8% Similarity=-0.033 Sum_probs=134.7
Q ss_pred HHHHhhCCHHHHHHHHHhcCCCC-Ccchh----HHHHHHHhhcCChhHHHHHHhcCC-CCC----------cchHHHHHH
Q 005969 381 TSYAKSGLISDALAFVTALNIPR-AVVPA----NIIAGIYNRTGQYNETVKLLSQLE-RPD----------IVSWNIVIA 444 (667)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~-~~~----------~~~~~~li~ 444 (667)
-+....|+.++++.++...-... +...+ ..+.-++...|..+++..++.... .++ ...-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566788888888887763211 11222 223333445555556666555433 222 111222323
Q ss_pred HHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH--HHHHh
Q 005969 445 ACAHNGD-YKEVLELFKYMRAARIYPDNYTFV--SLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLI--DMYGK 519 (667)
Q Consensus 445 ~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~ 519 (667)
+.+-.|. -+++.+.+..+.... .+...... .+-..+...|+.+....++..+.+.. +......+. -++..
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhh
Confidence 3333342 345666666665532 11111122 22333557788888888888777642 223333333 34446
Q ss_pred cCChHHHHHHHHhcC-CCChh-hHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 005969 520 CGSIGSSVKIFNEMT-DRNVI-TWT---ALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGME 594 (667)
Q Consensus 520 ~~~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (667)
.|+.+.+..+++.+. ..+.. -|. ++.-+|+..|+.....++++.+.+.. ..+....-.+.-++...|+.+.+..
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 677777777776665 23322 222 33456677788777777888888741 2222222333334455677777777
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHHHhhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005969 595 LFERMNRSYGVEPEMDHYHCVVDLLVRYGHL-KEAEKIITTMPFPPNALIWRTFLEGC 651 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~l~~~~ 651 (667)
+++.+.+. ..|....-..+.-+....|.. .+|.+.+..+...+|..+-..-+.++
T Consensus 616 lv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 616 IVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 77666332 234333333333333334433 57777887775556655555444443
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.96 E-value=3.8 Score=39.37 Aligned_cols=70 Identities=9% Similarity=-0.049 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC--------CCCCCHHHHHHH
Q 005969 576 LIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM--------PFPPNALIWRTF 647 (667)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~l 647 (667)
...++..+...|++++|...+..+... .+.+...+..++.++.+.|+..+|.+.|++. ++.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445677888999999999999998655 4556778999999999999999999998775 478887764433
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.35 E-value=18 Score=27.88 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=37.1
Q ss_pred CCCHhHHHHHHHHHhccCCH---HHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 005969 570 KPDRVALIAVLTACRHGGLV---REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNA 641 (667)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~ 641 (667)
.|+..|-..+.+++.++.+. .+++.+++++.+. +-.-....+-.|.-++.+.|++++|.+..+.+ ...|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 44555555555555554433 3456666665443 21112344445556666666666666666665 344543
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.33 E-value=40 Score=37.83 Aligned_cols=142 Identities=14% Similarity=0.048 Sum_probs=88.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCC---------------------
Q 005969 477 LLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTD--------------------- 535 (667)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------- 535 (667)
++..+...+..+.+.++... .+.++...-.+..+|...|++++|.+.|++...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34444455555555443322 122444444556667777777777777766541
Q ss_pred -----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 005969 536 -----RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDR----VALIAVLTACRHGGLVREGMELFERMNRSYGVE 606 (667)
Q Consensus 536 -----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (667)
.-..-|..++..+-+.+.++.++++-+...+..-+-+. ..|..+.+++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 01123566777888888889888888877664211121 25778888999999999999988877322 2
Q ss_pred CCcchhHHHHHHHhhcCChHH
Q 005969 607 PEMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~ 627 (667)
--...+..|+..++..|..+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 234567777777777665543
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.07 E-value=18 Score=28.30 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 005969 537 NVITWTALISALGLNGF---AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERM 599 (667)
Q Consensus 537 ~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (667)
+..+--.+..++++..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|+++.+.+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333344444444443 3345555555555321111223344444556666666666666655
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.37 E-value=11 Score=29.06 Aligned_cols=69 Identities=9% Similarity=-0.002 Sum_probs=44.3
Q ss_pred CChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 536 RNVITWTALISALGLNGF---AQRALEKFREMEFLGFKP--DRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 536 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
|+..+--.+..++++..+ ..+++.+++++.+.+ | ....+-.|.-++.+.|++++|+++.+.+.+ +.|+-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCC
Confidence 344444455566666554 456778888877754 4 234556677778888888888888887742 45554
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.00 E-value=35 Score=28.85 Aligned_cols=89 Identities=19% Similarity=0.131 Sum_probs=37.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRH 585 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 585 (667)
+...-...+.++.+.++.+....+.+.+.+++...-...+.++...|.. ++...+.++.+ .++...-...+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3444444444444444443333333333344444444444444444432 23333333332 3444444444444444
Q ss_pred cCCHHHHHHHHHHh
Q 005969 586 GGLVREGMELFERM 599 (667)
Q Consensus 586 ~g~~~~A~~~~~~~ 599 (667)
.+. .++...+..+
T Consensus 170 ~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 170 IGG-ERVRAAMEKL 182 (211)
T ss_dssp HCS-HHHHHHHHHH
T ss_pred hCc-hhHHHHHHHH
Confidence 444 3334444444
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.92 E-value=43 Score=29.80 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHhcCChHHHHHHHhccC-C---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCC
Q 005969 283 LVDFYAKCDNLEGAHLCFSEIS-N---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPN 341 (667)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~ 341 (667)
.+...+..|+.+-+..+++... . .+....+.+..+.. .+... ..++++.+.+.|..++
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~-~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH-CSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH-ccccchHHHHHHHHHHcCCCCC
Confidence 3344455666666666665422 1 22223333333333 33333 4555555666665544
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.25 E-value=19 Score=27.73 Aligned_cols=63 Identities=8% Similarity=-0.035 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 005969 121 FVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVN 184 (667)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (667)
+.-+..+-++.+...++.|++......+++|-+.+|+..|..+++-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 334566667777777888888888888888888888888888888877654 223445555543
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.64 E-value=29 Score=27.19 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=55.1
Q ss_pred CCCCCHhHHHHHHHHHhccCCH---HHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH
Q 005969 568 GFKPDRVALIAVLTACRHGGLV---REGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM-PFPPNALI 643 (667)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 643 (667)
+-.|+..+-..+.+++.++... .++..+++++.+. +-.-.....-.|.-++.+.|++++|.+..+.+ ...|+..-
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3357777777788888887654 5688888888665 32223455667888899999999999999988 46665433
Q ss_pred H
Q 005969 644 W 644 (667)
Q Consensus 644 ~ 644 (667)
-
T Consensus 113 A 113 (144)
T 1y8m_A 113 V 113 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=74.51 E-value=83 Score=32.42 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHH
Q 005969 439 WNIVIAACAH---NGDYKEVLELFKYM 462 (667)
Q Consensus 439 ~~~li~~~~~---~g~~~~A~~~~~~m 462 (667)
+..||..|.+ ..++..|.+.|--+
T Consensus 356 ~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 356 FANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 5556666654 45666666666555
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.67 E-value=50 Score=30.85 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCC
Q 005969 439 WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLC--NLALGSSLHGLIKKTEIIS 504 (667)
Q Consensus 439 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~ 504 (667)
.+.++.-|...|+.++|.+.++++....+. .......+..+.-+.+ ..+....++..+...+..+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 466778888888888888888888532111 1223344444444432 2345666666666666554
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=72.45 E-value=14 Score=33.51 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=19.9
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCC-CcccHHHHHHHHhcCCChH
Q 005969 282 ALVDFYAKCDNLEGAHLCFSEISNK-NIVSWNALILGYASKSSPT 325 (667)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~ 325 (667)
+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|..+
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHH
Confidence 3444445556666555555543332 2212223333444555555
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.05 E-value=48 Score=27.80 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 551 NGFAQRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 551 ~~~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
.+...++.++|..|...|+--. +..|......+...|++.+|.++|+.-+.. +-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 4456788889999988887765 446777888888889999999998887544 666643
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=70.03 E-value=81 Score=30.44 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=49.9
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCch--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChh--hHHHHHHHhcccC
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSLV--TWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTES--SFVGVIHGLSNEQ 155 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~ 155 (667)
+.+..-+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+..++ +.|..++.. .-.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 3444455667777777777653332211 1112333344556655443333 334333221 1112333444455
Q ss_pred chHHHHHHHHHHHHhcCCCchHH--HHHHHHHHHhcCChhHHHHhhccC
Q 005969 156 DLEFGEQIHGLVIKNGFDYELLV--ANSLVNMYFQCAGIWSAEKMFKDV 202 (667)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 202 (667)
+.+- .+.+.+.|..++... -..-+...+..|+.+.+..+++.-
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 5543 333444454333111 111233344556666665555543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.57 E-value=15 Score=35.80 Aligned_cols=63 Identities=8% Similarity=-0.027 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005969 438 SWNIVIAACAHNGDYKEVLELFKYMRAARIYP--DNYTFVSLLSACSKLCNLALGSSLHGLIKKT 500 (667)
Q Consensus 438 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (667)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-.+++.+...+++..+...+.++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666666666666666665432222 2234555555666666666666666655443
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.86 E-value=7 Score=34.55 Aligned_cols=114 Identities=13% Similarity=-0.026 Sum_probs=71.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 545 ISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 545 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
+....+.|++++|++....-++.. +-|...-..|++.+|-.|+++.|.+-++... + ..|+...-..+.+.+.++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a-~--l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI-K--LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H--HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H--hCchhhHHHHHHHHHHHH--
Confidence 345678899999999999888862 4467777889999999999999999998874 3 345543332232333332
Q ss_pred hHHHH-HHHHhC--C--CCCCHHHHHHHHHHH--HhcCChhHHhhhhh
Q 005969 625 LKEAE-KIITTM--P--FPPNALIWRTFLEGC--QRCRIAKYDTLNST 665 (667)
Q Consensus 625 ~~~A~-~~~~~m--~--~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~ 665 (667)
+... ++|.-- + +.....-...|+++. ...|+.+.|...+.
T Consensus 78 -E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~ 124 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 124 (273)
T ss_dssp -HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2222 233222 1 222233445666664 44588888876654
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.60 E-value=16 Score=35.64 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=70.2
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCC------CChhhHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCCHhH--
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTD------RNVITWTALISALGLNGFAQRALEKFREMEF---LGFKPDRVA-- 575 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~g~~p~~~~-- 575 (667)
..+...+...|.+.|++++|.+.+.++.+ .-+..+-..+..+...+++..+...+.+... .+-.|+...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34667788999999999999999988873 2344677778888899999999999888754 232333321
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhC
Q 005969 576 LIAVLTACRHGGLVREGMELFERMNRSYG 604 (667)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (667)
...-...+...+++.+|...|-+....+.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 11222335678899999999998866643
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.56 E-value=23 Score=31.34 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=70.6
Q ss_pred HHHHhcCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccC
Q 005969 515 DMYGKCGSIGSSVKIFNEMT--DR-NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRV----ALIAVLTACRHGG 587 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g 587 (667)
....+.|++++|++....-. +| |...-..|+.-+|-.|++++|.+-++...+. .|+.. +|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 34567899999998887655 34 6667778899999999999999999998884 66533 45555543
Q ss_pred CHHHHHHHHHHhHHhhCCCCC----c-chhHHHHHHHh--hcCChHHHHHHHHhC
Q 005969 588 LVREGMELFERMNRSYGVEPE----M-DHYHCVVDLLV--RYGHLKEAEKIITTM 635 (667)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~----~-~~~~~l~~~~~--~~g~~~~A~~~~~~m 635 (667)
...-.++... +-.|. + .-...++.++. ..|+.++|.++-++.
T Consensus 78 -----E~~R~~vfaG-~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 78 -----AQARKDFAQG-AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp -----HHHHHHHTTS-CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2222222122 22222 1 23445666654 468999988876554
No 280
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=67.05 E-value=80 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.499 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCC
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNK 306 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~ 306 (667)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44556666667777777777766654
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.43 E-value=54 Score=28.13 Aligned_cols=17 Identities=6% Similarity=-0.255 Sum_probs=7.3
Q ss_pred HHHhcCChhHHHHhhcc
Q 005969 185 MYFQCAGIWSAEKMFKD 201 (667)
Q Consensus 185 ~~~~~g~~~~A~~~~~~ 201 (667)
..+..|+.+-+.-+++.
T Consensus 48 ~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 48 WAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 33444444444444443
No 282
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=63.43 E-value=65 Score=29.72 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCChHHHHHHHhccC-C---CCcccHHHHHHHHhcCCChHHHHHHHHHH
Q 005969 261 GKSIHAKVIKNALECDVFV--GSALVDFYAKCDNLEGAHLCFSEIS-N---KNIVSWNALILGYASKSSPTSIFLLIELL 334 (667)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~a~~~~~~m~ 334 (667)
...+.+.+.+.|..++... ..+-+...+..|..+.+..+++.-. . +|..-.+.|..+ ++.|..+. ++.+.
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~i---v~~Ll 293 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKKI---AELLC 293 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHHH---HHHHH
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHHH---HHHHH
Confidence 3445556677777665432 2234455667788887777765421 1 233223344333 34555553 33345
Q ss_pred HcCCCCCHhhHHHHHHHhhhhhhhHHHHHHHHhcCcch
Q 005969 335 QLGYRPNEFTFSHVLRSSLAFQLLQLHCLIIRMGYENY 372 (667)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (667)
+.|..++..+ .+......+..++.+.+.+.|-.||
T Consensus 294 ~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 294 KRGASTDCGD---LVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp TTSCSSTTCC---HHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred HCCCCCCCCC---HHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 6677776654 2222233344455555555554443
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.10 E-value=58 Score=28.03 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=14.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCcCC
Q 005969 114 SIFGKHGFVEDCMFLFCELVRSEVALT 140 (667)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~~ 140 (667)
...++.|+.+-+..+++.+.+.|..++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 334555666666666665555554443
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.94 E-value=69 Score=26.67 Aligned_cols=153 Identities=8% Similarity=-0.029 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhhHHHHHHHhhc
Q 005969 175 ELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTTFVYVINSCAG 254 (667)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (667)
+..+....+..+.+.|..+....+.+.+..++...-...+.++...++.+. ...+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 333333334444444443333334444444444444444555555554433 333333332 2455555555556665
Q ss_pred cCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHHHHH
Q 005969 255 LQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLIELL 334 (667)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~ 334 (667)
.++.+....+...+ -.++..+-...+.++.+.++.+....+...+.+++...-...+.++...+..++...+..+.
T Consensus 103 ~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l 178 (201)
T 3ltj_A 103 IGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLA 178 (201)
T ss_dssp HCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 55543333322222 24455566666666666666554444444455566555556666666666666666666655
Q ss_pred H
Q 005969 335 Q 335 (667)
Q Consensus 335 ~ 335 (667)
.
T Consensus 179 ~ 179 (201)
T 3ltj_A 179 E 179 (201)
T ss_dssp H
T ss_pred h
Confidence 4
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.72 E-value=48 Score=27.81 Aligned_cols=61 Identities=7% Similarity=0.045 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHH
Q 005969 485 CNLALGSSLHGLIKKTEIISSDTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALI 545 (667)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 545 (667)
++.....++|..|...|+-..-...|......+...|++.+|.++|+.-.+........|.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3355777777777777766555666777777777777777777777765544443333333
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.66 E-value=1.3e+02 Score=28.69 Aligned_cols=27 Identities=4% Similarity=-0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC
Q 005969 279 VGSALVDFYAKCDNLEGAHLCFSEISN 305 (667)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (667)
....|...|.+.|+.++..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888889999888888877654
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.37 E-value=64 Score=28.97 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=9.3
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 005969 284 VDFYAKCDNLEGAHLCFSE 302 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~ 302 (667)
+...++.|+.+-+.-+++.
T Consensus 199 L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 199 IKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHTCHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344455565555544444
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.45 E-value=63 Score=31.91 Aligned_cols=21 Identities=5% Similarity=-0.115 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005969 13 ISAYSRCGYVEDALRMFLYMI 33 (667)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~ 33 (667)
.--+..++++++|..+-..+.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~ 163 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVV 163 (523)
T ss_dssp ---------------------
T ss_pred HHHHhccccHHHHHHHHHHHH
Confidence 333455666666666655544
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=56.67 E-value=65 Score=26.69 Aligned_cols=150 Identities=8% Similarity=-0.016 Sum_probs=66.5
Q ss_pred HHhcCChhHHHHhhccCC-C---CCchhHHHHHHHHHccCChhHHHHHHHHhHhCCcCCChhh--HHHHHHHhhccCChh
Q 005969 186 YFQCAGIWSAEKMFKDVE-I---RDVVSWNTIIGALAESENFGKALELYLRMSVDIVFPNQTT--FVYVINSCAGLQNSI 259 (667)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 259 (667)
.+..|+.+....++..-. . .|..-++. +...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 344566666666665443 1 22222223 33334455544 3333444454443221 112233333445555
Q ss_pred HHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCChHHHHHHHhcc-CC---CCcccHHHHHHHHhcCCChH-HHHHHHH
Q 005969 260 LGKSIHAKVIKNALECDVF--VGSALVDFYAKCDNLEGAHLCFSEI-SN---KNIVSWNALILGYASKSSPT-SIFLLIE 332 (667)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~ 332 (667)
-+..+++. .+..++.. .-.+.+...++.|+.+-+..+++.- .. ++..-.+.+..+........ -.++++.
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 44444322 22222211 1122334455667777666666554 22 33333444544443333233 4566666
Q ss_pred HHHcCCCCCHh
Q 005969 333 LLQLGYRPNEF 343 (667)
Q Consensus 333 m~~~~~~~~~~ 343 (667)
+.+.|..++..
T Consensus 164 Ll~~ga~~~~~ 174 (201)
T 3hra_A 164 LMENGADQSIK 174 (201)
T ss_dssp HHHTTCCTTCC
T ss_pred HHHCCCCCCcc
Confidence 66777666543
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.17 E-value=12 Score=33.09 Aligned_cols=55 Identities=11% Similarity=-0.044 Sum_probs=32.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCcCChhh-------HHHHHHHh--cccCchHHHHHHHHHHH
Q 005969 114 SIFGKHGFVEDCMFLFCELVRSEVALTESS-------FVGVIHGL--SNEQDLEFGEQIHGLVI 168 (667)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~~--~~~~~~~~a~~~~~~~~ 168 (667)
...++.|+.+....+++.+.+.|..++... .+.|..+. ++.|+.+-+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566788877777777766665555332 22333332 25677777766666543
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.10 E-value=81 Score=26.91 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=6.4
Q ss_pred hccCChhhHHHHHH
Q 005969 482 SKLCNLALGSSLHG 495 (667)
Q Consensus 482 ~~~~~~~~a~~~~~ 495 (667)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455544444443
No 292
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=54.11 E-value=75 Score=27.23 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=11.5
Q ss_pred HHHhccCChhhHHHHHHHHHH
Q 005969 479 SACSKLCNLALGSSLHGLIKK 499 (667)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~ 499 (667)
......++...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334455566666666655544
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.42 E-value=72 Score=25.32 Aligned_cols=9 Identities=0% Similarity=0.168 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 005969 492 SLHGLIKKT 500 (667)
Q Consensus 492 ~~~~~~~~~ 500 (667)
++|..|...
T Consensus 86 ~if~~L~~~ 94 (152)
T 4a1g_A 86 QFFEFLYNH 94 (152)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
Confidence 333333333
No 294
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.32 E-value=57 Score=26.98 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=28.1
Q ss_pred hccCChhHHHHhhccCCCC-CchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCCh
Q 005969 86 GRHGCLDEVVSVFEDMPRK-SLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTE 141 (667)
Q Consensus 86 ~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 141 (667)
++.|+++....++..-... +...-.+.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 4556666666665543221 1011122334445556655556666666666655544
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.09 E-value=1.4e+02 Score=27.19 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHhcCCCh--H-HHHHHHHHHHcCCCCCHhhHH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNI---VSWNALILGYASKSSP--T-SIFLLIELLQLGYRPNEFTFS 346 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~--~-a~~~~~~m~~~~~~~~~~~~~ 346 (667)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++. + ...++..+...|+-+......
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 5678888889999999999999987622 2334444455554443 3 667888888777666555443
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.91 E-value=1.3e+02 Score=26.60 Aligned_cols=109 Identities=14% Similarity=0.027 Sum_probs=55.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 005969 506 DTFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNVITWTALISALGLNG-FAQRALEKFREMEFLGFKPDRVALIAVLTACR 584 (667)
Q Consensus 506 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 584 (667)
+...-...+.++...++.+....+.+.+.+++...-...+.++...+ ....+...+..+.+ .++...-...+.++.
T Consensus 141 ~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 141 STNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLS 217 (280)
T ss_dssp CHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 56666666666666665443334444445566555555555555544 23445555544443 455556666666777
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 585 HGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
+.|+......+...+ .+ ++ +-...+.++.+.|+
T Consensus 218 ~~~~~~~~~~L~~~l-~d----~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 218 YRKDKRVLSVLCDEL-KK----NT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HTTCGGGHHHHHHHH-TS----SS--CCHHHHHHHHHHCC
T ss_pred HhCCHhhHHHHHHHh-cC----cc--HHHHHHHHHHhcCc
Confidence 766544333333333 32 22 33445566666665
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=50.02 E-value=1.8e+02 Score=27.72 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHhc
Q 005969 373 EYVLGSLMTSYAKSGLISDALAFVTAL 399 (667)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 399 (667)
......+...|.+.|+.++..+++...
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345567888899999999999888766
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.64 E-value=46 Score=29.24 Aligned_cols=26 Identities=4% Similarity=-0.201 Sum_probs=13.7
Q ss_pred HHHccCChhHHHHHHHHhHhCCcCCC
Q 005969 216 ALAESENFGKALELYLRMSVDIVFPN 241 (667)
Q Consensus 216 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 241 (667)
..++.|+.+....+++.+...|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666665555555555444444
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.45 E-value=1.8e+02 Score=28.85 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=65.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHHhcCCCCh-h------hHH-HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----
Q 005969 507 TFVCNMLIDMYGKCGSIGSSVKIFNEMTDRNV-I------TWT-ALISALGLNGFAQRALEKFREMEFLGFKPDRV---- 574 (667)
Q Consensus 507 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~------~~~-~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~---- 574 (667)
...+|.+++.|...+.++.|..+.....-|.. . .|. -+...+.-.+++.+|.+.+...... .+++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhhhhH
Confidence 45667777888888888888888887764422 1 121 2345566778888998888887764 222221
Q ss_pred ---H--HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 575 ---A--LIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 575 ---~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
. |..++..+ .|++.+ ..+| ..++......-|..|..++ +.|+.++-.+.+++-
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFF----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHH----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHh----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 1 11222222 244333 1111 1111111123366666664 678877766666655
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.91 E-value=65 Score=27.98 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=44.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 005969 513 LIDMYGKCGSIGSSVKIFNEMTD-----RN-----VITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVALIAVLTA 582 (667)
Q Consensus 513 l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 582 (667)
-++.+....++++|..++++..+ ++ .......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 35666777788888777775541 11 111122222222222223333444444 22 4445555666667
Q ss_pred HhccCCHHHHHHHHHHh
Q 005969 583 CRHGGLVREGMELFERM 599 (667)
Q Consensus 583 ~~~~g~~~~A~~~~~~~ 599 (667)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77777777777777666
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.63 E-value=1.1e+02 Score=24.33 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCc
Q 005969 555 QRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEM 609 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (667)
+++.++|..|..+|+-.. +..|......+...|++.+|.++|+.-++. +-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 447888888888887765 446777788888889999999998887544 666643
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.58 E-value=1.1e+02 Score=24.38 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=41.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDRNV---ITWTALISALGLNGF--AQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~~~~~g~~p~ 572 (667)
....++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345677888888899999999988876632 233444445544332 4557777777777665443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.86 E-value=76 Score=27.55 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=14.3
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 005969 113 VSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~ 133 (667)
+..+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 556666777777777776654
No 304
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.67 E-value=1.6e+02 Score=26.03 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=19.4
Q ss_pred ChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCC
Q 005969 74 DAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHG 120 (667)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 120 (667)
|..+-..-+..+.+.|..+....+.+.+..++...-...+.++...|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 33333334444444444333333333333344444444445555544
No 305
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.30 E-value=2.1e+02 Score=26.48 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=5.8
Q ss_pred ccCChhhHHHHHH
Q 005969 483 KLCNLALGSSLHG 495 (667)
Q Consensus 483 ~~~~~~~a~~~~~ 495 (667)
..|+.+-+..+++
T Consensus 253 ~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 253 RAAMVLLTKELLQ 265 (364)
T ss_dssp HTCCHHHHHHHHH
T ss_pred HhChHHHHHHHHH
Confidence 3455444444443
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.11 E-value=84 Score=21.47 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHHCCCcCChhhHHHHHHHhcccC-chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh
Q 005969 130 CELVRSEVALTESSFVGVIHGLSNEQ-DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGI 192 (667)
Q Consensus 130 ~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (667)
+.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777776655 34555555544 4556778888888777666777777777777776654
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.76 E-value=1.4e+02 Score=24.03 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcc
Q 005969 555 QRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMD 610 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (667)
+++.++|..|...|+-.. +..|......+...|++.+|.++|+.-+.. +-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHH
Confidence 347778888988887766 446777777888889999999999888544 6666543
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.47 E-value=85 Score=25.93 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=27.9
Q ss_pred HHHhhccCChhHHHHhhccCC-C---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCC
Q 005969 82 LGLYGRHGCLDEVVSVFEDMP-R---KSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALT 140 (667)
Q Consensus 82 ~~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 140 (667)
+...+..|+.+.+..++..-. . .+...++.| ...++.|+.+ +++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADIN 66 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCC
Confidence 334456788888888887654 2 222223333 3334455543 4444445554443
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.22 E-value=65 Score=27.14 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHh--H-----HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCC
Q 005969 554 AQRALEKFREMEFLGFKPDRV--A-----LIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGH 624 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~--~-----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (667)
++.|+.+|+.+.+.--.|+.. . --..+-.|.+.|.+++|.+++++...+ .++..-...-+....+.++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~---~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK---DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC---CCCchHHHHHHHHHHhccC
Confidence 677888888887753222211 1 123455678888888888888877432 4444433333333344443
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.75 E-value=1.3e+02 Score=23.11 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHhcCCCh--H-HHHHHHHHHHcCCCCCHhh
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNI---VSWNALILGYASKSSP--T-SIFLLIELLQLGYRPNEFT 344 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~--~-a~~~~~~m~~~~~~~~~~~ 344 (667)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.+.. + ...++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566667777777777777777765421 2233334444444322 3 5566667766665554443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.68 E-value=1.4e+02 Score=23.67 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHhcCCCh--H-HHHHHHHHHHcCCCCCHhh
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNI---VSWNALILGYASKSSP--T-SIFLLIELLQLGYRPNEFT 344 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~--~-a~~~~~~m~~~~~~~~~~~ 344 (667)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.+.. + ...++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566667777777777777777765421 2233334444443332 2 5556666666665554443
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.54 E-value=2.6e+02 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 005969 515 DMYGKCGSIGSSVKIFNEMTDR---NVITWTALISALGLNGFAQRALEKFREMEFLGFKPDR 573 (667)
Q Consensus 515 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~ 573 (667)
...+..|+.+-+.-+++.-.++ +..-++.|.. .+..|+. ++.+.+.+.|..|+.
T Consensus 316 ~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChH----HHHHHHHHCcCCCCC
Confidence 3344566666666666543332 2222233333 3345554 345556667777754
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.46 E-value=2.4e+02 Score=26.31 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHhcCCCh--H-HHHHHHHHHHcCCCCCHhhHHHHHH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNI---VSWNALILGYASKSSP--T-SIFLLIELLQLGYRPNEFTFSHVLR 350 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~--~-a~~~~~~m~~~~~~~~~~~~~~~l~ 350 (667)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++. + ...++..+...|+-+.......+.+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 5677888888999999999999887642 2344444455554433 3 6677778887776665555444443
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.36 E-value=1.8e+02 Score=24.84 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 005969 555 QRALEKFREMEFLGFKPD-RVALIAVLTACRHGGLVREGMELFERMNRSYGVEPE 608 (667)
Q Consensus 555 ~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (667)
+++.++|..|...|+--. +..|......+...|++.+|.++|+.-+.. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 567788888888887765 446777788888889999999988887554 66664
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.87 E-value=1.3e+02 Score=23.02 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 005969 509 VCNMLIDMYGKCGSIGSSVKIFNEMTDRNV---ITWTALISALGLNGF--AQRALEKFREMEFLGFKPD 572 (667)
Q Consensus 509 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~~~~~g~~p~ 572 (667)
....++.-|...|+.++|.+.++++..|.. .....+..++-+.+. .+.+..++..+.+.|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345677888888999999999998876632 233444445544432 4567777888777665443
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.70 E-value=2.3e+02 Score=27.51 Aligned_cols=47 Identities=17% Similarity=0.035 Sum_probs=31.4
Q ss_pred hCCHHHHHHHHHhcCCCCCcchhHHHHHHHhhcCChhHHHHHHhcCC
Q 005969 386 SGLISDALAFVTALNIPRAVVPANIIAGIYNRTGQYNETVKLLSQLE 432 (667)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (667)
..+.+-|.++-.+.+.|.....|..-.+.+...|++++|.++--..+
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 46677777777777666666666666667777777777766655443
No 317
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=38.14 E-value=95 Score=23.33 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHH
Q 005969 554 AQRALEKFREMEFLGFKPDRVALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKE 627 (667)
Q Consensus 554 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 627 (667)
+.+|+.-+++..+. .+|......++..+... ++.++++.++.....|+ .+.++...++.+.+.|-.++
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~ 71 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPE 71 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCc
Confidence 44455555555432 33444444444444332 34455555555444454 35555556666666654433
No 318
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=37.92 E-value=2.4e+02 Score=25.76 Aligned_cols=15 Identities=0% Similarity=-0.108 Sum_probs=7.3
Q ss_pred HHHhhCCHHHHHHHH
Q 005969 382 SYAKSGLISDALAFV 396 (667)
Q Consensus 382 ~~~~~~~~~~a~~~~ 396 (667)
..+..|..+.+..++
T Consensus 245 ~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 334455555555443
No 319
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=36.04 E-value=2.5e+02 Score=25.54 Aligned_cols=75 Identities=13% Similarity=-0.014 Sum_probs=32.6
Q ss_pred hHHHHHHHHhcCcchhhh--HHHHHHHHHhhCCHHHHHHHHHhcCCCCCcc--hhHHHHHHHhhcCChhHHHHHHhcCCC
Q 005969 358 LQLHCLIIRMGYENYEYV--LGSLMTSYAKSGLISDALAFVTALNIPRAVV--PANIIAGIYNRTGQYNETVKLLSQLER 433 (667)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (667)
.++...+.+.|..++..- -.+.+...+..|+.+-+.-+++ .+..++.. .-...+...+..|+.+-+.-+++.-..
T Consensus 227 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 345555555554432111 1123344455566544443333 22222211 112233444556666666666665443
No 320
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.68 E-value=2e+02 Score=24.35 Aligned_cols=85 Identities=4% Similarity=-0.131 Sum_probs=38.2
Q ss_pred HHHHHccCChhHHHHHHHHhHhCCcCCChhh--HHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchH--HHHHHHHHHh
Q 005969 214 IGALAESENFGKALELYLRMSVDIVFPNQTT--FVYVINSCAGLQNSILGKSIHAKVIKNALECDVFV--GSALVDFYAK 289 (667)
Q Consensus 214 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~ 289 (667)
+...++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566777766666666655555444321 112233333444443 3333444554443221 1122333344
Q ss_pred cCChHHHHHHHhc
Q 005969 290 CDNLEGAHLCFSE 302 (667)
Q Consensus 290 ~g~~~~a~~~~~~ 302 (667)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5555544444443
No 321
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.60 E-value=3.9e+02 Score=27.56 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=20.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005969 8 SFNSIISAYSRCGYVEDALRMFLYMIN 34 (667)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (667)
.|- +|--|.|+|++++|.++.++...
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh
Confidence 443 57778899999999999877654
No 322
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.19 E-value=2.7e+02 Score=25.69 Aligned_cols=207 Identities=11% Similarity=0.024 Sum_probs=98.8
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCCcc--hhHHHHHHHhhcCChhHHHHHHhcCCCCCcchHHHHHHHHHHcCChhHHHH
Q 005969 380 MTSYAKSGLISDALAFVTALNIPRAVV--PANIIAGIYNRTGQYNETVKLLSQLERPDIVSWNIVIAACAHNGDYKEVLE 457 (667)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 457 (667)
+...+..|+.+-+..+++. +..++.. .-...+...+..|+.+-+.-+++.-..++...-.+.+...+..|+.+-+..
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHH
Confidence 3344455565555555543 1111111 112233444455666655556665444333222234444556777777777
Q ss_pred HHHHHHHcCCCCCH--------------------HHHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCC--CchhHHhHH
Q 005969 458 LFKYMRAARIYPDN--------------------YTFVSLLSACSKLC--NLALGSSLHGLIKKTEIIS--SDTFVCNML 513 (667)
Q Consensus 458 ~~~~m~~~g~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~--~~~~~~~~l 513 (667)
+++.-...|..|+. .-.+.|.. .+..| +.+- ++.+.+.|..+ .+..-. +.
T Consensus 103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~----v~~Ll~~ga~~~~~d~~g~-t~ 176 (364)
T 3ljn_A 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEM----IKILVQLGASPTAKDKADE-TP 176 (364)
T ss_dssp HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHH----HHHHHHHTCCTTCCCTTSC-CH
T ss_pred HHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHH----HHHHHHcCCCCcccCCCCC-CH
Confidence 77765554544443 11223333 33444 4443 33344444332 122222 23
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH--HHHHHHH
Q 005969 514 IDMYGKCGSIGSSVKIFNEMTD--------RNVITWTALISALGLNGFAQRALEKFREMEFLGFKPDRVAL--IAVLTAC 583 (667)
Q Consensus 514 ~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~--~~li~~~ 583 (667)
+...+..|+.+-+..+++.-.. .+..-.+.|. ..+..|+.+ +.+.+.+.|..++.... .+-+...
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 4445567888877777775332 2222223333 334556544 44555667776653311 1223333
Q ss_pred hccCCHHHHHHHHHH
Q 005969 584 RHGGLVREGMELFER 598 (667)
Q Consensus 584 ~~~g~~~~A~~~~~~ 598 (667)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 456777777777665
No 323
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.72 E-value=1.1e+02 Score=27.01 Aligned_cols=18 Identities=0% Similarity=-0.073 Sum_probs=9.9
Q ss_pred HHhcCChhHHHHhhccCC
Q 005969 186 YFQCAGIWSAEKMFKDVE 203 (667)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~ 203 (667)
.+..|+.+-+.-+++...
T Consensus 108 A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 108 AIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHCCC
Confidence 345566666666655543
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.17 E-value=93 Score=25.09 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=8.5
Q ss_pred HhccCChhhHHHHHHHHHHhC
Q 005969 481 CSKLCNLALGSSLHGLIKKTE 501 (667)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~ 501 (667)
+...|++..|.++++.-.+.+
T Consensus 106 lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 106 YEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 333344444444444444333
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.82 E-value=1.9e+02 Score=23.46 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=44.5
Q ss_pred hcCChHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---------------C-C-HhHHHHHHH
Q 005969 519 KCGSIGSSVKIFNEMTDRNVITWTALISALGLNGFAQRALEKFREMEFLGFK---------------P-D-RVALIAVLT 581 (667)
Q Consensus 519 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~---------------p-~-~~~~~~li~ 581 (667)
-.|.+..++-++.........-|..| +|-+.+++.+|+..++.+....+. | | ...|+.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 34556666555554332222222222 345566777777777777644333 1 2 224566677
Q ss_pred HHhccCCHHHHHHHHHH
Q 005969 582 ACRHGGLVREGMELFER 598 (667)
Q Consensus 582 ~~~~~g~~~~A~~~~~~ 598 (667)
.|...|+.++|...+..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
Confidence 77788888888888764
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.88 E-value=2.2e+02 Score=23.93 Aligned_cols=20 Identities=0% Similarity=-0.203 Sum_probs=11.8
Q ss_pred HHHHHhcCChhHHHHhhccC
Q 005969 183 VNMYFQCAGIWSAEKMFKDV 202 (667)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~ 202 (667)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44455566776666666543
No 327
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.69 E-value=4.2e+02 Score=27.07 Aligned_cols=325 Identities=10% Similarity=-0.046 Sum_probs=158.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhhhhhH
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAFQLLQ 359 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (667)
..-+..+.+.+++.....++.. ...+...-.....+....|+.. +......+-..|. ..+..+..++....
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~------ 147 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWR------ 147 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHH------
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHH------
Confidence 3445556666777777776655 3333444444555666667666 6665555544432 12223333333222
Q ss_pred HHHHHHHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCCCCcc-hhHHHHHHHhhcCChhHHHHHHhcCCCCCcch
Q 005969 360 LHCLIIRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIPRAVV-PANIIAGIYNRTGQYNETVKLLSQLERPDIVS 438 (667)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 438 (667)
+.|......++ .-+......|+...|..+...+ +++.. ....++.... +...+....... .++...
T Consensus 148 ------~~g~lt~~~~~-~R~~~al~~~~~~~a~~l~~~l--~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~ 214 (618)
T 1qsa_A 148 ------ASGKQDPLAYL-ERIRLAMKAGNTGLVTVLAGQM--PADYQTIASAIISLAN---NPNTVLTFARTT-GATDFT 214 (618)
T ss_dssp ------HTTCSCHHHHH-HHHHHHHHTTCHHHHHHHHHTC--CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHH
T ss_pred ------HCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHhC--CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhh
Confidence 22222222222 2234555666677666665544 11111 1122222221 222222222221 122211
Q ss_pred ---HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 005969 439 ---WNIVIAACAHNGDYKEVLELFKYMRAARIYPDNYT----FVSLLSACSKLCNLALGSSLHGLIKKTEIISSDTFVCN 511 (667)
Q Consensus 439 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (667)
+..-+.-+.+ .+.+.|...+....+.+ ..+... ...+.......+...++...+....... .+.....
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e 289 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSLIE 289 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC---CChHHHH
Confidence 1112222333 36788888888776543 223322 2223333344443445555555543322 2444445
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHc------------CCCCC----
Q 005969 512 MLIDMYGKCGSIGSSVKIFNEMTDRN---VITWTALISALGLNGFAQRALEKFREMEFL------------GFKPD---- 572 (667)
Q Consensus 512 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------g~~p~---- 572 (667)
-.+....+.|+++.|...|+.|.... ..-.--+..++...|+.++|..+|+++... |.++.
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~ 369 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID 369 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC
Confidence 55555567788888888888887532 222223455667788888888888776532 22110
Q ss_pred ---H---h-----HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCcchhHHHHHHHhhcCChHHHHHHHHhC
Q 005969 573 ---R---V-----ALIAVLTACRHGGLVREGMELFERMNRSYGVEPEMDHYHCVVDLLVRYGHLKEAEKIITTM 635 (667)
Q Consensus 573 ---~---~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 635 (667)
. . .-..-+..+...|....|...|..+.+. . +......+.......|..+.++....+.
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~--~--~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--K--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc--C--CHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 0 0112234456677788888777776332 2 2233334455555667777666655544
No 328
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.66 E-value=96 Score=27.01 Aligned_cols=55 Identities=11% Similarity=-0.114 Sum_probs=28.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCcCCh-------hhHHHHHHHhccc---CchHHHHHHHHHHH
Q 005969 113 VSIFGKHGFVEDCMFLFCELVRSEVALTE-------SSFVGVIHGLSNE---QDLEFGEQIHGLVI 168 (667)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~ 168 (667)
+...++.|+.+....+++.+.+.|..++. ...+.| ...+.. |+.+-+..+++.-.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCC
Confidence 33445667777666666666665554433 222222 222233 66666665555443
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.81 E-value=1.2e+02 Score=20.60 Aligned_cols=62 Identities=3% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHhHhCCcCCChhhHHHHHHHhhccC-ChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 005969 231 LRMSVDIVFPNQTTFVYVINSCAGLQ-NSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNL 293 (667)
Q Consensus 231 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (667)
+.|.+.|+.++..-. .++..+...+ ..-.+.++.+.+.+.+...+..+....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 345566777665443 4445555544 5566778888887777666666666666666666543
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.14 E-value=1.9e+02 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 005969 13 ISAYSRCGYVEDALRMFLYMINRGFEPTQ 41 (667)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 41 (667)
+...++.|+.+ +++.+.+.|..++.
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~ 39 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDT 39 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCc
Confidence 44445566654 34444555555443
No 331
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.31 E-value=1.2e+02 Score=26.31 Aligned_cols=23 Identities=4% Similarity=-0.122 Sum_probs=11.3
Q ss_pred HHHccCChhHHHHHHHHhHhCCc
Q 005969 216 ALAESENFGKALELYLRMSVDIV 238 (667)
Q Consensus 216 ~~~~~~~~~~a~~~~~~m~~~g~ 238 (667)
..++.|+.+.+..+++.+...|.
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 33445555555555554444443
No 332
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.97 E-value=65 Score=27.55 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=72.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCch---hHhHhhc-cCCccchhhHHHHHHHHHhCCCCC-----C--hhHHh
Q 005969 11 SIISAYSRCGYVEDALRMFLYMINRGFEPTQF---TFGGLLS-CDSLNPVEGAQLQASVLKNGLFCA-----D--AFVGT 79 (667)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~-----~--~~~~~ 79 (667)
+.+...++.|+.+.+..+++. .|..++.. -++.+.. +..++.+.+..+++ .| ..+ + .....
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~-~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLME----AA-PELVFEPMTSELYEGQ 76 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HC-GGGGGCCCCSTTTTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----cC-chhccccccccCCCCc
Confidence 345556677877665555542 25444432 2233333 44445544444443 33 111 1 01123
Q ss_pred hHHHHhhccCChhHHHHhhccCCCCCc----------------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhh
Q 005969 80 ALLGLYGRHGCLDEVVSVFEDMPRKSL----------------VTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESS 143 (667)
Q Consensus 80 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 143 (667)
..+...+..|+.+-+..+++.-..++. ...+ .+...+..|+.+ +++.+.+.|..++...
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH-PLSFAACVGSEE----IVRLLIEHGADIRAQD 151 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSS-HHHHHHHHTCHH----HHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCCCC
Confidence 344455667777777777765433221 1222 233334455543 3444445555444321
Q ss_pred --HHHHHHHhcccCchHHHHHHHHHHHHhcCC
Q 005969 144 --FVGVIHGLSNEQDLEFGEQIHGLVIKNGFD 173 (667)
Q Consensus 144 --~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (667)
-.+.+...+..|+.+.+..+++.+.+.|..
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 123445555667777777777777776643
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.33 E-value=4e+02 Score=25.86 Aligned_cols=117 Identities=17% Similarity=0.001 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCCCHhhHHHHHHHhhhh
Q 005969 280 GSALVDFYAKCDNLEGAHLCFSEISN---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRPNEFTFSHVLRSSLAF 355 (667)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 355 (667)
|..-.+.+...|++++|.++-..-+. ++..+.+.+-..-...|... -+..|..+.+.|- .+..--.-+.+.....
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~q 442 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQQ 442 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cchHHhhHHhHHHHhc
Confidence 33344455666777777666554443 33333333322223344444 5555555555542 2332222233333333
Q ss_pred hhhHHHHHH-HHhcCcchhhhHHHHHHHHHhhCCHHHHHHHHHhcCCC
Q 005969 356 QLLQLHCLI-IRMGYENYEYVLGSLMTSYAKSGLISDALAFVTALNIP 402 (667)
Q Consensus 356 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 402 (667)
+..++.... .+..+..+...-. ++ +..+..-|+.+|.+.+.+
T Consensus 443 ~r~~llekWl~e~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~~~ 485 (494)
T 1bpo_A 443 GRKQLLEKWLKEDKLECSEELGD-LV----KSVDPTLALSVYLRANVP 485 (494)
T ss_dssp TCHHHHHHHHHHTCSCCCHHHHH-HH----HHHCSHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHhcCCccccHHhHh-hh----hhcCHHHHHHHHHHcCCc
Confidence 444333333 3334444443322 22 334566666666555433
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.26 E-value=96 Score=24.32 Aligned_cols=63 Identities=10% Similarity=0.040 Sum_probs=38.5
Q ss_pred HHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChh
Q 005969 130 CELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIW 193 (667)
Q Consensus 130 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (667)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3455667666655443 33333334445567777777777766666666666677777777654
No 335
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.04 E-value=1.1e+02 Score=26.14 Aligned_cols=28 Identities=7% Similarity=-0.083 Sum_probs=17.5
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcCCC
Q 005969 248 VINSCAGLQNSILGKSIHAKVIKNALEC 275 (667)
Q Consensus 248 ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 275 (667)
.+...+..|+.+.+..+++.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3444555677776667777777776543
No 336
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.12 E-value=3.4e+02 Score=24.62 Aligned_cols=27 Identities=4% Similarity=0.148 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCC
Q 005969 281 SALVDFYAKCDNLEGAHLCFSEISNKN 307 (667)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 307 (667)
..++.-|...|+.++|...++++..|.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 455666666777777777777766543
No 337
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.06 E-value=50 Score=23.76 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=31.0
Q ss_pred CChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHH
Q 005969 89 GCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCM 126 (667)
Q Consensus 89 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 126 (667)
.+.+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999999988899999999998777655443
No 338
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.49 E-value=2.9e+02 Score=23.61 Aligned_cols=53 Identities=6% Similarity=0.009 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHCCCcCCh-hhHHHHHHHhcccCchHHHHHHHHHHHHhcCCC
Q 005969 122 VEDCMFLFCELVRSEVALTE-SSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDY 174 (667)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 174 (667)
.+++.++|..|...||--.. .-|..-...+...|++.+|..+|+.-++.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35777888888887765443 345555666667788888888888777777665
No 339
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.03 E-value=1.9e+02 Score=25.41 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=7.5
Q ss_pred HccCChhHHHHHHHHhH
Q 005969 218 AESENFGKALELYLRMS 234 (667)
Q Consensus 218 ~~~~~~~~a~~~~~~m~ 234 (667)
++.|+.+.+..+++...
T Consensus 21 ~~~g~~~~v~~Ll~~~~ 37 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQ 37 (273)
T ss_dssp HHTTCSSTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 33444444444444433
No 340
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.49 E-value=1.8e+02 Score=22.42 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHCCCcCChhhHHHHHHHhcccC-chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChh
Q 005969 131 ELVRSEVALTESSFVGVIHGLSNEQ-DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIW 193 (667)
Q Consensus 131 ~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (667)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456677777766543 344444444 56678888888888877777766666677777766543
No 341
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.21 E-value=2e+02 Score=24.26 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=32.7
Q ss_pred hHHHHHHHHhcCC-CC--hh--------hHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005969 523 IGSSVKIFNEMTD-RN--VI--------TWTALISALGLNGFAQRALEKFREMEFL 567 (667)
Q Consensus 523 ~~~A~~~~~~~~~-~~--~~--------~~~~li~~~~~~~~~~~A~~~~~~~~~~ 567 (667)
.+.|..+|+.+.+ .+ .. .--..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 6889999998873 11 11 1113356788999999999999998774
No 342
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.19 E-value=1.8e+02 Score=22.86 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHCCCcCChhhHHHHHHHhcccC-chHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChh
Q 005969 130 CELVRSEVALTESSFVGVIHGLSNEQ-DLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIW 193 (667)
Q Consensus 130 ~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (667)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4466788887776654 444454444 56678999999988877777777666777777777543
No 343
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.81 E-value=1.4e+02 Score=21.33 Aligned_cols=41 Identities=7% Similarity=0.030 Sum_probs=30.9
Q ss_pred CChHHHHHHHhccCCCCcccHHHHHHHHhcCCChHHHHHHH
Q 005969 291 DNLEGAHLCFSEISNKNIVSWNALILGYASKSSPTSIFLLI 331 (667)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~ 331 (667)
...+.|.++++.++.++...|..++.++...|.....+++.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~ 91 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLR 91 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHc
Confidence 46788888888888888888888888887777766444443
No 344
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.73 E-value=1.8e+02 Score=20.48 Aligned_cols=61 Identities=7% Similarity=0.125 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCCCChhHHhhHHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChH
Q 005969 58 GAQLQASVLKNGLFCADAFVGTALLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVE 123 (667)
Q Consensus 58 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 123 (667)
...++..+.+.|.+. ..-+..+. ......+.|..+++.++.++..+|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vlt--~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT--ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSC--HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345666666666222 22222222 23567788899998888888888888888888776543
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.35 E-value=3.3e+02 Score=22.77 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=40.3
Q ss_pred HHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh-----hhHHHHHHHHHHhC
Q 005969 440 NIVIAACA---HNGDYKEVLELFKYMRAARIYPDNYTFVSLLSACSKLCNL-----ALGSSLHGLIKKTE 501 (667)
Q Consensus 440 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~ 501 (667)
--+|+++. +..+++.|+-++-+|.+.| .|....-..++-+.-..|.- ..|...++.....|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 83 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG 83 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 34556654 4679999999999999999 77766666666666555432 23344444455555
No 346
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.01 E-value=4.4e+02 Score=24.09 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCchhHhHhhc-cCCc-cchhhHHHHH-----------HHHHhCCCCCChhHHhhHHH
Q 005969 17 SRCGYVEDALRMFLYMINRGFEPTQFTFGGLLS-CDSL-NPVEGAQLQA-----------SVLKNGLFCADAFVGTALLG 83 (667)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~-~~~~a~~~~~-----------~~~~~~~~~~~~~~~~~l~~ 83 (667)
...|++.+|+..|+..... ..+. .... +.+++.++.. ++.++. ++.+...-+.-+.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~-l~~~~~kR~lELA 193 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETAREYILGLSIELERRS-LKEGNTVRMLELA 193 (325)
T ss_dssp HHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTTCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHH
Confidence 5689999999999998853 2222 2222 3444444333 222222 2333333444444
Q ss_pred HhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHCCCcCChhhHHHHHHHhcccCchHHHHHH
Q 005969 84 LYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELVRSEVALTESSFVGVIHGLSNEQDLEFGEQI 163 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 163 (667)
+|-.+-+++....++ +...-+....+.+++..|..+-+++++.+.. ....++|.++
T Consensus 194 AYFT~c~LQp~H~~L---------aLr~AM~~a~K~KNy~tAa~fArrLLel~p~---------------~~~a~qArki 249 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTN---------ALQVAMSQHFKHKNFLQASYFAGEFLKIISS---------------GPRAEQARKI 249 (325)
T ss_dssp HHGGGSCCCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS---------------SHHHHHHHHH
T ss_pred HHhccCCCcHHHHHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---------------HHHHHHHHHH
Confidence 554444444443332 5566677788899999999999999886532 2244567777
Q ss_pred HHHHHHh
Q 005969 164 HGLVIKN 170 (667)
Q Consensus 164 ~~~~~~~ 170 (667)
+....+.
T Consensus 250 l~~ce~~ 256 (325)
T 3mv2_A 250 KNKADSM 256 (325)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 6666544
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.97 E-value=4.6e+02 Score=28.62 Aligned_cols=52 Identities=8% Similarity=-0.054 Sum_probs=39.9
Q ss_pred HHHHhhccCChhHHHHhhccCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 005969 81 LLGLYGRHGCLDEVVSVFEDMPRKSLVTWNSIVSIFGKHGFVEDCMFLFCELV 133 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (667)
++..+...|..+-|.++....+.....+ -.+..+|...|++++|.++|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6677778889998888887777533333 356778899999999999998863
No 348
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.71 E-value=1.7e+02 Score=22.91 Aligned_cols=33 Identities=6% Similarity=-0.064 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 005969 259 ILGKSIHAKVIKNALECDVFVGSALVDFYAKCD 291 (667)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 291 (667)
-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 38 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444444444433333333333334444433
No 349
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.66 E-value=3.1e+02 Score=22.31 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=15.2
Q ss_pred hhHHHHHHHhhcC-ChHHHHHHHHhCCCCCC
Q 005969 611 HYHCVVDLLVRYG-HLKEAEKIITTMPFPPN 640 (667)
Q Consensus 611 ~~~~l~~~~~~~g-~~~~A~~~~~~m~~~p~ 640 (667)
....++..+.+.| .++.+..+++.+...||
T Consensus 138 ~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 138 KQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 3445555666666 45555556655543443
No 350
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.35 E-value=1.4e+02 Score=23.56 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=40.8
Q ss_pred HHHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhH
Q 005969 130 CELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWS 194 (667)
Q Consensus 130 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (667)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 345667776655543 3344444445566788888888888777777777777778888776543
No 351
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.11 E-value=1.1e+02 Score=24.56 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=46.9
Q ss_pred HHHHHHHHH-HHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCChhH
Q 005969 123 EDCMFLFCE-LVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKN--GFDYELLVANSLVNMYFQCAGIWS 194 (667)
Q Consensus 123 ~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 194 (667)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 344444433 456777776654 34555666666677788888888887 766777666667777888776543
No 352
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.72 E-value=53 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHhCCCCCChh
Q 005969 54 NPVEGAQLQASVLKNGLFCADAF 76 (667)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~ 76 (667)
+++.|...|..+.+.|.+||+.+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CHHHHHHHHHHHHHcCCCCHHHh
Confidence 77777777777777776777654
No 353
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.71 E-value=3.5e+02 Score=22.46 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=6.4
Q ss_pred HHHhcccCchHHHH
Q 005969 148 IHGLSNEQDLEFGE 161 (667)
Q Consensus 148 i~~~~~~~~~~~a~ 161 (667)
+...+..|+.+-+.
T Consensus 29 L~~A~~~g~~~~v~ 42 (223)
T 2f8y_A 29 LHLAARYSRSDAAK 42 (223)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 34444555544333
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.27 E-value=1.3e+02 Score=22.95 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 005969 159 FGEQIHGLVIKNGFDYELLVANSLVNMYFQCAG 191 (667)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (667)
.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 28 sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 28 SAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444444433344444444444444443
No 355
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.26 E-value=2e+02 Score=20.23 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=21.3
Q ss_pred CChhHHHHhhccCCCCCchhHHHHHHHHHccCCh
Q 005969 190 AGIWSAEKMFKDVEIRDVVSWNTIIGALAESENF 223 (667)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 223 (667)
...+.|.++++.++.++..+|..++.++.+.+..
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 4455666666666666666666666666665543
No 356
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.01 E-value=4.8e+02 Score=23.83 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHhc-
Q 005969 228 ELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAK----CDNLEGAHLCFSE- 302 (667)
Q Consensus 228 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~- 302 (667)
+++..+.+.|+.|...++..++..+++.=.++.+..+|+.+...|...-..+..+++..+.. ..+.++..+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred cCCCCcccHHHHHHHHhcCCChHHHHHHHH
Q 005969 303 ISNKNIVSWNALILGYASKSSPTSIFLLIE 332 (667)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~~~~~a~~~~~~ 332 (667)
++..+......++...........+.-++.
T Consensus 289 ~p~~~~~di~~li~~A~~l~~s~~l~~~e~ 318 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMDIAKQLQAYEV 318 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHH
No 357
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.69 E-value=3e+02 Score=21.56 Aligned_cols=63 Identities=6% Similarity=0.025 Sum_probs=41.2
Q ss_pred HHhHhCCcCCChhhHHHHHHHhhccC-ChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 005969 231 LRMSVDIVFPNQTTFVYVINSCAGLQ-NSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLE 294 (667)
Q Consensus 231 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (667)
+.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456677776655443 344444455 56778888888888877777776666667777766543
No 358
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.44 E-value=90 Score=24.36 Aligned_cols=152 Identities=9% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHhhccCCCCCchhHH--HHHHHHHccCC
Q 005969 145 VGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIWSAEKMFKDVEIRDVVSWN--TIIGALAESEN 222 (667)
Q Consensus 145 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~ 222 (667)
...+...+..|+.+.+..+++. ....+......-...+.. +..|+.+-+..+++....++..... +.+...+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q ss_pred hhHHHHHHHHhHhCCcCCChhhHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHhc
Q 005969 223 FGKALELYLRMSVDIVFPNQTTFVYVINSCAGLQNSILGKSIHAKVIKNALECDVFVGSALVDFYAKCDNLEGAHLCFSE 302 (667)
Q Consensus 223 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (667)
.+-+.-+++ ....+......-.+.+...+..|+.+-+.-+++. ..+......-.+-+...++.|+.+-+.-+++.
T Consensus 81 ~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVE--HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Q ss_pred c
Q 005969 303 I 303 (667)
Q Consensus 303 ~ 303 (667)
+
T Consensus 156 ~ 156 (156)
T 1bd8_A 156 M 156 (156)
T ss_dssp C
T ss_pred C
No 359
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.41 E-value=1.5e+02 Score=23.22 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=34.8
Q ss_pred HHHHCCCcCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChh
Q 005969 131 ELVRSEVALTESSFVGVIHGLSNEQDLEFGEQIHGLVIKNGFDYELLVANSLVNMYFQCAGIW 193 (667)
Q Consensus 131 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (667)
.+.+.|++++..-.. ++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 9 ~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345566666555432 233333333 4467777777776666666666666666677766543
No 360
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.21 E-value=3.5e+02 Score=23.76 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=26.9
Q ss_pred HHHHHhcCChHHHHHHHhccC-C---CCcccHHHHHHHHhcCCChH-HHHHHHHHHHcCCCC
Q 005969 284 VDFYAKCDNLEGAHLCFSEIS-N---KNIVSWNALILGYASKSSPT-SIFLLIELLQLGYRP 340 (667)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~-a~~~~~~m~~~~~~~ 340 (667)
+...+..|+.+-+..+++.-. . .+..-++.+..+........ ..+++..+.+.|..+
T Consensus 115 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~ 176 (276)
T 4hbd_A 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN 176 (276)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc
Confidence 334456667666666665432 2 23333444444433322222 555555555555433
Done!