Query 005972
Match_columns 666
No_of_seqs 498 out of 3467
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:30:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13796 GTPase YqeH; Provisio 100.0 1.3E-67 2.8E-72 571.7 33.7 332 245-616 34-365 (365)
2 TIGR03597 GTPase_YqeH ribosome 100.0 1.4E-64 3E-69 547.2 35.0 333 245-616 28-360 (360)
3 KOG1249 Predicted GTPases [Gen 100.0 2.3E-61 4.9E-66 523.1 9.4 403 244-654 155-569 (572)
4 COG1160 Predicted GTPases [Gen 100.0 5.5E-34 1.2E-38 308.3 16.7 278 203-530 4-304 (444)
5 COG1161 Predicted GTPases [Gen 100.0 6.2E-32 1.4E-36 288.5 8.1 306 247-615 1-321 (322)
6 cd01855 YqeH YqeH. YqeH is an 100.0 4.3E-30 9.3E-35 253.5 18.8 186 248-460 1-190 (190)
7 cd01858 NGP_1 NGP-1. Autoanti 99.9 4.4E-25 9.5E-30 211.6 14.8 148 287-460 5-157 (157)
8 PRK03003 GTP-binding protein D 99.9 2.6E-24 5.7E-29 241.1 18.5 274 203-528 39-335 (472)
9 TIGR03594 GTPase_EngA ribosome 99.9 3.4E-24 7.5E-29 236.6 18.2 273 206-528 3-296 (429)
10 PRK00093 GTP-binding protein D 99.9 1.3E-23 2.9E-28 232.6 18.0 275 204-528 3-297 (435)
11 PRK12289 GTPase RsgA; Reviewed 99.9 1.9E-23 4E-28 225.4 15.2 229 244-505 35-278 (352)
12 PRK09518 bifunctional cytidyla 99.9 4.8E-23 1E-27 241.4 19.0 274 203-528 276-574 (712)
13 cd01849 YlqF_related_GTPase Yl 99.9 2.6E-22 5.6E-27 192.2 15.3 142 292-460 1-155 (155)
14 TIGR03596 GTPase_YlqF ribosome 99.9 5.6E-22 1.2E-26 207.8 16.0 154 280-466 13-179 (276)
15 TIGR00157 ribosome small subun 99.9 9.2E-22 2E-26 202.9 14.9 193 287-510 33-229 (245)
16 PRK09563 rbgA GTPase YlqF; Rev 99.9 3.2E-21 7E-26 203.1 17.2 153 280-465 16-181 (287)
17 cd04178 Nucleostemin_like Nucl 99.9 8.3E-22 1.8E-26 192.9 11.8 147 292-460 1-172 (172)
18 PRK12288 GTPase RsgA; Reviewed 99.9 4.9E-21 1.1E-25 206.5 17.2 195 287-510 117-315 (347)
19 COG1159 Era GTPase [General fu 99.9 2.1E-21 4.6E-26 201.1 11.8 159 202-398 7-174 (298)
20 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 8.2E-21 1.8E-25 179.2 14.2 134 287-463 8-141 (141)
21 KOG2484 GTPase [General functi 99.8 5.1E-21 1.1E-25 203.4 13.3 158 280-466 138-313 (435)
22 cd01856 YlqF YlqF. Proteins o 99.8 2.2E-20 4.8E-25 181.8 16.2 144 287-461 16-171 (171)
23 COG1162 Predicted GTPases [Gen 99.8 3.8E-20 8.3E-25 193.4 16.4 190 281-500 71-262 (301)
24 cd01859 MJ1464 MJ1464. This f 99.8 7.4E-20 1.6E-24 174.8 16.5 144 288-460 10-156 (156)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.8 6.4E-20 1.4E-24 193.4 14.1 193 287-510 75-271 (287)
26 PRK00098 GTPase RsgA; Reviewed 99.8 2.6E-19 5.6E-24 189.7 16.4 194 287-510 77-274 (298)
27 KOG2423 Nucleolar GTPase [Gene 99.8 1.7E-19 3.7E-24 190.7 10.7 162 276-465 201-367 (572)
28 KOG1424 Predicted GTP-binding 99.8 1.7E-18 3.6E-23 189.1 12.1 168 271-467 157-376 (562)
29 PRK01889 GTPase RsgA; Reviewed 99.7 4.6E-16 9.9E-21 168.9 15.7 189 288-508 110-302 (356)
30 KOG2485 Conserved ATP/GTP bind 99.6 9.9E-16 2.1E-20 159.4 11.8 158 287-467 43-213 (335)
31 TIGR00436 era GTP-binding prot 99.6 1.9E-15 4.1E-20 157.8 11.2 157 202-398 1-166 (270)
32 PF03193 DUF258: Protein of un 99.6 8E-16 1.7E-20 148.8 5.5 133 362-509 8-144 (161)
33 KOG1423 Ras-like GTPase ERA [C 99.5 7.2E-14 1.6E-18 144.9 9.2 166 202-398 73-273 (379)
34 PRK00089 era GTPase Era; Revie 99.5 1.1E-13 2.4E-18 145.7 10.5 159 202-398 6-173 (292)
35 COG1160 Predicted GTPases [Gen 99.5 5.6E-14 1.2E-18 153.3 6.8 137 400-547 5-143 (444)
36 COG1159 Era GTPase [General fu 99.5 6.2E-14 1.3E-18 145.9 6.8 118 398-526 6-125 (298)
37 PRK12298 obgE GTPase CgtA; Rev 99.5 1.9E-13 4.2E-18 150.0 10.1 164 205-397 162-334 (390)
38 PRK15494 era GTPase Era; Provi 99.4 3.2E-13 7E-18 145.8 11.6 156 204-398 54-218 (339)
39 KOG1249 Predicted GTPases [Gen 99.4 1.6E-13 3.5E-18 151.0 8.8 180 245-449 75-270 (572)
40 KOG1144 Translation initiation 99.4 3.2E-12 6.9E-17 144.1 11.6 248 198-491 471-764 (1064)
41 PF02421 FeoB_N: Ferrous iron 99.3 7.9E-13 1.7E-17 127.6 2.8 144 205-391 3-156 (156)
42 COG0486 ThdF Predicted GTPase 99.3 4.9E-12 1.1E-16 138.6 9.2 123 395-528 214-337 (454)
43 PRK12296 obgE GTPase CgtA; Rev 99.3 1.2E-11 2.6E-16 139.0 11.8 162 205-395 162-339 (500)
44 COG0218 Predicted GTPase [Gene 99.3 1.8E-11 4E-16 121.5 11.2 159 201-395 23-196 (200)
45 TIGR02729 Obg_CgtA Obg family 99.2 2.3E-11 4.9E-16 131.0 10.7 160 205-395 160-328 (329)
46 cd01898 Obg Obg subfamily. Th 99.2 7.3E-11 1.6E-15 112.7 10.2 95 287-394 75-169 (170)
47 PRK12299 obgE GTPase CgtA; Rev 99.2 6.5E-11 1.4E-15 127.7 10.8 159 205-396 161-328 (335)
48 PF10662 PduV-EutP: Ethanolami 99.2 7.8E-11 1.7E-15 112.0 9.7 137 206-393 5-143 (143)
49 COG0486 ThdF Predicted GTPase 99.2 5.1E-11 1.1E-15 130.7 8.6 152 201-396 216-376 (454)
50 COG0218 Predicted GTPase [Gene 99.2 3E-11 6.6E-16 119.9 5.8 122 399-526 25-149 (200)
51 PRK12297 obgE GTPase CgtA; Rev 99.2 1.9E-10 4.1E-15 127.5 12.3 158 205-396 161-327 (424)
52 cd01894 EngA1 EngA1 subfamily. 99.2 1E-10 2.2E-15 109.4 8.8 84 287-394 73-156 (157)
53 PF02421 FeoB_N: Ferrous iron 99.1 1.2E-10 2.6E-15 112.6 9.0 132 400-546 2-137 (156)
54 KOG1191 Mitochondrial GTPase [ 99.1 7.4E-11 1.6E-15 129.3 6.9 109 395-510 265-375 (531)
55 cd04171 SelB SelB subfamily. 99.1 8.8E-10 1.9E-14 104.1 13.1 93 287-393 71-163 (164)
56 TIGR03156 GTP_HflX GTP-binding 99.1 3E-10 6.6E-15 123.4 10.3 153 201-394 188-350 (351)
57 TIGR02528 EutP ethanolamine ut 99.1 1.8E-09 4E-14 100.6 13.3 83 287-392 59-141 (142)
58 PF01926 MMR_HSR1: 50S ribosom 99.1 1.4E-10 3.1E-15 105.1 5.3 90 400-495 1-91 (116)
59 KOG1489 Predicted GTP-binding 99.0 5E-10 1.1E-14 117.3 9.2 156 207-394 201-365 (366)
60 cd01879 FeoB Ferrous iron tran 99.0 1.5E-09 3.1E-14 102.1 11.1 83 289-394 73-155 (158)
61 COG2262 HflX GTPases [General 99.0 1.2E-09 2.6E-14 118.3 11.3 102 288-410 269-372 (411)
62 PRK00093 GTP-binding protein D 99.0 1.3E-09 2.9E-14 121.1 11.9 160 200-394 171-342 (435)
63 cd01881 Obg_like The Obg-like 99.0 8.3E-10 1.8E-14 105.6 8.7 100 287-393 71-174 (176)
64 TIGR03594 GTPase_EngA ribosome 99.0 1.7E-09 3.8E-14 119.8 11.9 93 287-395 251-343 (429)
65 cd04160 Arfrp1 Arfrp1 subfamil 99.0 1.7E-09 3.7E-14 103.0 10.2 97 287-393 70-166 (167)
66 PRK15467 ethanolamine utilizat 99.0 4.2E-09 9.1E-14 101.5 12.8 86 287-395 61-146 (158)
67 cd01897 NOG NOG1 is a nucleola 99.0 2.1E-09 4.6E-14 102.5 10.4 87 291-394 80-166 (168)
68 cd00881 GTP_translation_factor 99.0 7.9E-09 1.7E-13 99.8 14.5 97 287-397 82-188 (189)
69 cd04163 Era Era subfamily. Er 99.0 2.6E-09 5.6E-14 99.9 10.5 89 287-394 79-167 (168)
70 PRK03003 GTP-binding protein D 99.0 1.9E-09 4.2E-14 121.5 11.4 110 287-421 290-399 (472)
71 PRK04213 GTP-binding protein; 99.0 4.5E-09 9.8E-14 104.0 12.7 94 288-397 88-193 (201)
72 PF00009 GTP_EFTU: Elongation 99.0 4.7E-09 1E-13 103.6 12.4 107 270-396 78-187 (188)
73 cd01890 LepA LepA subfamily. 99.0 9.4E-09 2E-13 99.2 14.0 91 287-396 87-177 (179)
74 cd01895 EngA2 EngA2 subfamily. 99.0 4E-09 8.6E-14 99.8 11.0 93 287-394 81-173 (174)
75 cd01889 SelB_euk SelB subfamil 99.0 7.7E-09 1.7E-13 102.2 13.1 97 287-397 88-187 (192)
76 TIGR00436 era GTP-binding prot 99.0 1.1E-09 2.4E-14 114.6 7.3 117 399-527 1-119 (270)
77 PRK11058 GTPase HflX; Provisio 99.0 2.8E-09 6E-14 118.6 10.9 89 288-396 274-362 (426)
78 PRK09518 bifunctional cytidyla 98.9 3.8E-09 8.1E-14 124.8 10.4 93 287-396 529-621 (712)
79 cd04166 CysN_ATPS CysN_ATPS su 98.9 2.3E-08 5E-13 100.5 14.2 89 287-388 97-186 (208)
80 cd01884 EF_Tu EF-Tu subfamily. 98.9 2.1E-08 4.6E-13 100.3 13.7 87 287-385 85-172 (195)
81 cd04138 H_N_K_Ras_like H-Ras/N 98.9 1.3E-08 2.8E-13 95.7 11.3 91 288-394 70-160 (162)
82 cd01861 Rab6 Rab6 subfamily. 98.9 1.6E-08 3.4E-13 95.7 11.6 91 288-394 70-160 (161)
83 cd01866 Rab2 Rab2 subfamily. 98.9 3.6E-08 7.9E-13 94.8 13.8 91 287-394 73-164 (168)
84 PRK05291 trmE tRNA modificatio 98.9 5E-09 1.1E-13 117.5 8.9 147 201-395 214-369 (449)
85 cd00154 Rab Rab family. Rab G 98.9 4.7E-08 1E-12 90.7 13.9 153 206-392 4-158 (159)
86 cd04151 Arl1 Arl1 subfamily. 98.9 3.2E-08 7E-13 93.9 13.0 95 287-393 63-157 (158)
87 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 4.9E-08 1.1E-12 92.8 14.2 93 287-394 70-164 (168)
88 smart00175 RAB Rab subfamily o 98.9 1.8E-08 3.9E-13 95.2 11.2 155 206-395 4-161 (164)
89 COG1084 Predicted GTPase [Gene 98.9 7.3E-09 1.6E-13 109.4 9.1 131 397-538 167-304 (346)
90 cd01868 Rab11_like Rab11-like. 98.8 2.1E-08 4.5E-13 95.5 11.5 156 204-394 5-163 (165)
91 cd04145 M_R_Ras_like M-Ras/R-R 98.8 2.4E-08 5.2E-13 94.5 11.6 156 204-394 4-162 (164)
92 smart00178 SAR Sar1p-like memb 98.8 3.5E-08 7.5E-13 97.0 12.9 159 203-393 18-182 (184)
93 cd04123 Rab21 Rab21 subfamily. 98.8 3.4E-08 7.4E-13 92.8 12.2 156 205-394 3-160 (162)
94 cd01864 Rab19 Rab19 subfamily. 98.8 4E-08 8.7E-13 93.8 12.9 92 287-394 72-164 (165)
95 cd01865 Rab3 Rab3 subfamily. 98.8 3.6E-08 7.7E-13 94.5 12.2 92 287-395 70-162 (165)
96 PRK15494 era GTPase Era; Provi 98.8 5.8E-09 1.3E-13 112.9 7.5 133 398-541 52-186 (339)
97 COG0536 Obg Predicted GTPase [ 98.8 7.7E-09 1.7E-13 109.7 8.1 99 287-395 234-332 (369)
98 cd01860 Rab5_related Rab5-rela 98.8 9.4E-08 2E-12 90.5 14.4 92 287-395 70-162 (163)
99 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 7.4E-09 1.6E-13 102.9 7.0 102 400-509 2-108 (196)
100 cd04119 RJL RJL (RabJ-Like) su 98.8 9.4E-08 2E-12 90.4 14.2 95 288-394 70-165 (168)
101 smart00173 RAS Ras subfamily o 98.8 3.1E-08 6.7E-13 94.1 10.9 91 288-394 69-160 (164)
102 PRK09554 feoB ferrous iron tra 98.8 1.9E-08 4.1E-13 119.3 11.5 84 289-395 84-167 (772)
103 cd01878 HflX HflX subfamily. 98.8 2.8E-08 6.2E-13 98.7 11.0 86 288-394 118-203 (204)
104 cd04164 trmE TrmE (MnmE, ThdF, 98.8 2E-08 4.3E-13 93.8 9.2 79 287-394 77-155 (157)
105 cd04159 Arl10_like Arl10-like 98.8 6E-08 1.3E-12 90.2 12.5 94 287-393 64-158 (159)
106 cd01862 Rab7 Rab7 subfamily. 98.8 1E-07 2.3E-12 90.9 14.3 96 287-394 69-165 (172)
107 cd04109 Rab28 Rab28 subfamily. 98.8 6.6E-08 1.4E-12 97.5 13.2 93 288-394 71-164 (215)
108 PRK12298 obgE GTPase CgtA; Rev 98.8 1.2E-08 2.5E-13 112.5 8.2 86 400-494 161-248 (390)
109 cd04157 Arl6 Arl6 subfamily. 98.8 5.8E-08 1.3E-12 91.7 11.8 97 287-393 65-161 (162)
110 TIGR03598 GTPase_YsxC ribosome 98.8 3E-08 6.5E-13 96.8 10.1 81 289-385 99-179 (179)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 3.9E-08 8.4E-13 95.5 10.7 94 287-393 79-173 (174)
112 cd04112 Rab26 Rab26 subfamily. 98.8 9.2E-08 2E-12 94.4 13.4 91 288-395 71-162 (191)
113 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.8 6.9E-08 1.5E-12 92.2 12.0 90 288-394 72-162 (166)
114 cd04136 Rap_like Rap-like subf 98.8 5.2E-08 1.1E-12 92.1 11.0 91 288-394 70-161 (163)
115 PTZ00258 GTP-binding protein; 98.8 1.8E-08 4E-13 110.5 8.6 90 395-493 18-125 (390)
116 PRK00089 era GTPase Era; Revie 98.8 1.4E-08 2.9E-13 107.2 7.4 120 398-528 5-126 (292)
117 KOG1191 Mitochondrial GTPase [ 98.7 4.6E-09 1E-13 115.5 3.6 169 201-394 267-448 (531)
118 cd04156 ARLTS1 ARLTS1 subfamil 98.7 9.2E-08 2E-12 90.5 12.0 95 288-393 65-159 (160)
119 PRK00454 engB GTP-binding prot 98.7 7.8E-08 1.7E-12 94.3 11.7 92 288-397 104-195 (196)
120 cd04140 ARHI_like ARHI subfami 98.7 9.2E-08 2E-12 91.6 11.9 93 288-394 70-163 (165)
121 cd01863 Rab18 Rab18 subfamily. 98.7 9.3E-08 2E-12 90.5 11.8 91 287-393 69-159 (161)
122 cd01853 Toc34_like Toc34-like 98.7 3E-08 6.6E-13 102.9 8.7 75 385-464 18-93 (249)
123 cd04101 RabL4 RabL4 (Rab-like4 98.7 1.1E-07 2.3E-12 90.4 11.7 102 270-394 60-162 (164)
124 cd01867 Rab8_Rab10_Rab13_like 98.7 1.3E-07 2.8E-12 90.8 12.3 91 287-394 72-163 (167)
125 cd01900 YchF YchF subfamily. 98.7 2E-08 4.4E-13 105.6 7.2 84 401-493 1-102 (274)
126 cd04150 Arf1_5_like Arf1-Arf5- 98.7 8.2E-08 1.8E-12 92.0 10.6 95 287-393 64-158 (159)
127 PRK09601 GTP-binding protein Y 98.7 3E-08 6.5E-13 107.8 8.3 86 399-493 3-106 (364)
128 cd04139 RalA_RalB RalA/RalB su 98.7 1.3E-07 2.8E-12 89.2 11.7 92 287-394 68-160 (164)
129 COG0370 FeoB Fe2+ transport sy 98.7 5.2E-08 1.1E-12 111.4 10.5 151 204-397 5-165 (653)
130 cd04144 Ras2 Ras2 subfamily. 98.7 1.5E-07 3.2E-12 92.8 12.5 94 287-394 67-161 (190)
131 cd01893 Miro1 Miro1 subfamily. 98.7 2.2E-07 4.9E-12 89.1 13.4 95 288-394 68-162 (166)
132 cd04175 Rap1 Rap1 subgroup. T 98.7 8.6E-08 1.9E-12 91.3 10.3 91 288-394 70-161 (164)
133 cd01891 TypA_BipA TypA (tyrosi 98.7 2.7E-07 5.8E-12 91.3 14.0 88 287-389 85-175 (194)
134 PRK12317 elongation factor 1-a 98.7 7.7E-08 1.7E-12 107.1 11.2 168 204-388 8-197 (425)
135 cd04118 Rab24 Rab24 subfamily. 98.7 2.4E-07 5.3E-12 91.0 13.3 93 288-394 71-164 (193)
136 cd04158 ARD1 ARD1 subfamily. 98.7 1.5E-07 3.3E-12 90.8 11.5 99 288-397 64-162 (169)
137 TIGR00450 mnmE_trmE_thdF tRNA 98.7 6.3E-08 1.4E-12 108.4 10.0 123 395-528 200-323 (442)
138 cd04124 RabL2 RabL2 subfamily. 98.7 3.7E-07 7.9E-12 87.3 13.9 88 287-394 69-156 (161)
139 cd04154 Arl2 Arl2 subfamily. 98.7 1E-07 2.3E-12 92.1 10.2 94 287-392 78-171 (173)
140 cd04149 Arf6 Arf6 subfamily. 98.7 2.1E-07 4.5E-12 90.2 12.2 95 287-393 73-167 (168)
141 cd04122 Rab14 Rab14 subfamily. 98.7 3.7E-07 7.9E-12 87.4 13.7 90 287-393 71-161 (166)
142 cd00879 Sar1 Sar1 subfamily. 98.7 1.6E-07 3.5E-12 91.9 11.2 161 203-394 20-189 (190)
143 cd04147 Ras_dva Ras-dva subfam 98.7 3E-07 6.4E-12 91.4 13.1 96 287-395 67-162 (198)
144 TIGR00437 feoB ferrous iron tr 98.7 6.9E-08 1.5E-12 111.7 9.8 83 289-394 71-153 (591)
145 smart00174 RHO Rho (Ras homolo 98.6 2.1E-07 4.6E-12 89.3 11.5 96 287-394 66-170 (174)
146 cd00878 Arf_Arl Arf (ADP-ribos 98.6 3.5E-07 7.5E-12 86.5 12.7 154 206-393 3-157 (158)
147 cd04176 Rap2 Rap2 subgroup. T 98.6 1.3E-07 2.8E-12 89.9 9.7 91 288-394 70-161 (163)
148 PRK05506 bifunctional sulfate 98.6 4.1E-07 8.8E-12 106.3 15.6 171 205-394 27-231 (632)
149 TIGR00450 mnmE_trmE_thdF tRNA 98.6 1.2E-07 2.6E-12 106.2 10.7 148 201-394 202-358 (442)
150 cd04113 Rab4 Rab4 subfamily. 98.6 5.4E-07 1.2E-11 85.4 13.7 89 288-393 70-159 (161)
151 cd04137 RheB Rheb (Ras Homolog 98.6 3.3E-07 7.2E-12 88.8 12.3 91 288-394 70-161 (180)
152 cd00876 Ras Ras family. The R 98.6 2.1E-07 4.6E-12 87.2 10.5 91 287-393 67-158 (160)
153 cd00880 Era_like Era (E. coli 98.6 3.1E-07 6.8E-12 84.4 11.2 91 287-394 72-162 (163)
154 cd04114 Rab30 Rab30 subfamily. 98.6 7.4E-07 1.6E-11 85.0 14.1 92 287-394 76-167 (169)
155 cd04107 Rab32_Rab38 Rab38/Rab3 98.6 3.9E-07 8.4E-12 90.7 12.5 96 287-394 70-166 (201)
156 cd04110 Rab35 Rab35 subfamily. 98.6 3.7E-07 8.1E-12 90.8 12.4 89 288-394 76-165 (199)
157 cd04106 Rab23_lke Rab23-like s 98.6 7.4E-07 1.6E-11 84.3 13.8 89 287-393 71-160 (162)
158 cd04142 RRP22 RRP22 subfamily. 98.6 3.5E-07 7.7E-12 91.4 12.0 95 287-394 77-172 (198)
159 PTZ00369 Ras-like protein; Pro 98.6 2.7E-07 5.9E-12 90.9 10.6 92 287-394 73-165 (189)
160 cd01892 Miro2 Miro2 subfamily. 98.6 1.3E-07 2.7E-12 91.7 8.1 90 287-394 74-164 (169)
161 cd04127 Rab27A Rab27a subfamil 98.6 7E-07 1.5E-11 86.4 13.1 92 287-394 83-175 (180)
162 cd01888 eIF2_gamma eIF2-gamma 98.6 6.3E-07 1.4E-11 89.8 13.1 99 287-398 103-201 (203)
163 cd04125 RabA_like RabA-like su 98.6 5.9E-07 1.3E-11 88.1 12.4 91 287-394 69-160 (188)
164 cd04116 Rab9 Rab9 subfamily. 98.6 2.1E-06 4.6E-11 82.2 15.8 95 287-393 74-168 (170)
165 TIGR00475 selB selenocysteine- 98.6 6.2E-07 1.3E-11 103.8 14.0 161 205-395 3-165 (581)
166 PLN03118 Rab family protein; P 98.6 4.4E-07 9.6E-12 91.0 11.1 161 202-395 14-176 (211)
167 TIGR03598 GTPase_YsxC ribosome 98.6 1.3E-07 2.8E-12 92.4 7.1 120 398-527 18-141 (179)
168 KOG1423 Ras-like GTPase ERA [C 98.5 7.8E-08 1.7E-12 100.6 5.7 62 399-465 73-135 (379)
169 smart00177 ARF ARF-like small 98.5 9.7E-07 2.1E-11 86.0 13.1 91 288-394 78-172 (175)
170 cd00157 Rho Rho (Ras homology) 98.5 2E-07 4.3E-12 88.9 8.0 94 288-393 69-170 (171)
171 PTZ00133 ADP-ribosylation fact 98.5 3.1E-07 6.7E-12 90.3 9.5 92 288-395 82-177 (182)
172 cd01895 EngA2 EngA2 subfamily. 98.5 2.9E-07 6.3E-12 87.0 8.8 122 399-528 3-126 (174)
173 cd01896 DRG The developmentall 98.5 2.6E-07 5.6E-12 94.9 9.0 50 333-396 177-226 (233)
174 cd04132 Rho4_like Rho4-like su 98.5 1.3E-06 2.8E-11 85.3 13.5 92 287-394 69-165 (187)
175 CHL00071 tufA elongation facto 98.5 4.7E-07 1E-11 100.5 11.5 154 203-383 13-180 (409)
176 cd01899 Ygr210 Ygr210 subfamil 98.5 9.9E-07 2.2E-11 94.8 13.5 64 332-405 214-278 (318)
177 PRK10512 selenocysteinyl-tRNA- 98.5 9.6E-07 2.1E-11 102.7 14.2 162 204-396 2-166 (614)
178 PRK12299 obgE GTPase CgtA; Rev 98.5 2.4E-07 5.3E-12 100.2 8.7 86 400-494 160-247 (335)
179 PRK09866 hypothetical protein; 98.5 5.9E-07 1.3E-11 102.8 12.0 96 287-394 255-351 (741)
180 cd04111 Rab39 Rab39 subfamily. 98.5 6.4E-07 1.4E-11 90.4 11.1 92 287-394 72-164 (211)
181 cd04155 Arl3 Arl3 subfamily. 98.5 1.3E-06 2.8E-11 83.8 12.7 90 288-393 79-172 (173)
182 PRK05291 trmE tRNA modificatio 98.5 3.5E-07 7.7E-12 102.7 10.1 93 397-496 214-307 (449)
183 PLN03110 Rab GTPase; Provision 98.5 1.7E-06 3.6E-11 87.6 14.0 91 287-394 81-172 (216)
184 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 5.7E-07 1.2E-11 87.4 10.1 90 288-393 71-161 (172)
185 PRK12296 obgE GTPase CgtA; Rev 98.5 2.3E-07 5E-12 104.8 8.4 87 399-494 160-247 (500)
186 cd01876 YihA_EngB The YihA (En 98.5 7.7E-07 1.7E-11 83.5 10.7 91 288-394 79-169 (170)
187 cd04135 Tc10 TC10 subfamily. 98.5 9.5E-07 2.1E-11 84.8 11.5 95 287-393 68-171 (174)
188 cd00877 Ran Ran (Ras-related n 98.5 1.1E-06 2.3E-11 84.9 11.8 89 288-395 70-158 (166)
189 cd04128 Spg1 Spg1p. Spg1p (se 98.5 1.9E-06 4.1E-11 84.9 13.5 94 287-394 69-164 (182)
190 TIGR00991 3a0901s02IAP34 GTP-b 98.5 2.7E-07 5.9E-12 98.3 7.8 76 384-464 24-100 (313)
191 cd01898 Obg Obg subfamily. Th 98.5 4.4E-07 9.4E-12 86.6 8.4 88 400-496 2-91 (170)
192 PRK12297 obgE GTPase CgtA; Rev 98.5 3.6E-07 7.9E-12 101.6 8.8 86 400-494 160-247 (424)
193 cd01870 RhoA_like RhoA-like su 98.5 1.6E-06 3.5E-11 83.3 12.3 96 287-394 69-173 (175)
194 PRK00049 elongation factor Tu; 98.5 1.8E-06 4E-11 95.4 14.4 96 287-395 95-202 (396)
195 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.5 2.2E-06 4.8E-11 84.1 13.4 96 288-394 73-168 (183)
196 TIGR03156 GTP_HflX GTP-binding 98.5 2.4E-07 5.2E-12 100.8 7.0 87 399-495 190-280 (351)
197 cd01894 EngA1 EngA1 subfamily. 98.5 2.4E-07 5.2E-12 86.6 6.0 116 402-528 1-118 (157)
198 PRK12735 elongation factor Tu; 98.5 1.8E-06 3.9E-11 95.5 13.9 169 202-396 12-203 (396)
199 PLN00223 ADP-ribosylation fact 98.5 1.3E-06 2.9E-11 85.8 11.5 91 288-394 82-176 (181)
200 cd00882 Ras_like_GTPase Ras-li 98.4 3.1E-06 6.8E-11 76.4 12.9 91 288-392 66-156 (157)
201 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 2.2E-06 4.8E-11 83.2 12.6 96 287-395 69-164 (170)
202 cd04177 RSR1 RSR1 subgroup. R 98.4 2.2E-06 4.7E-11 82.4 12.3 91 288-393 70-161 (168)
203 PRK12736 elongation factor Tu; 98.4 2.2E-06 4.8E-11 94.7 14.1 98 287-396 95-201 (394)
204 cd04146 RERG_RasL11_like RERG/ 98.4 9.7E-07 2.1E-11 84.3 9.8 92 288-394 69-162 (165)
205 cd04126 Rab20 Rab20 subfamily. 98.4 2.4E-06 5.1E-11 87.2 13.2 94 288-394 65-188 (220)
206 cd04143 Rhes_like Rhes_like su 98.4 4.4E-06 9.5E-11 86.7 15.0 98 288-395 69-170 (247)
207 TIGR01393 lepA GTP-binding pro 98.4 1.3E-06 2.8E-11 101.3 12.1 92 287-397 90-181 (595)
208 PRK09554 feoB ferrous iron tra 98.4 4.4E-07 9.4E-12 107.9 8.2 119 399-528 4-125 (772)
209 TIGR02729 Obg_CgtA Obg family 98.4 7.1E-07 1.5E-11 96.4 8.8 88 399-495 158-247 (329)
210 cd04164 trmE TrmE (MnmE, ThdF, 98.4 1E-06 2.3E-11 82.1 8.8 89 399-495 2-92 (157)
211 cd04120 Rab12 Rab12 subfamily. 98.4 4.3E-06 9.2E-11 84.2 13.7 91 287-394 69-161 (202)
212 cd04148 RGK RGK subfamily. Th 98.4 3.5E-06 7.6E-11 85.7 13.1 89 290-394 72-161 (221)
213 cd04117 Rab15 Rab15 subfamily. 98.4 6.7E-06 1.5E-10 78.7 14.2 90 288-394 70-160 (161)
214 PLN03108 Rab family protein; P 98.4 5.2E-06 1.1E-10 83.6 14.0 89 288-393 76-165 (210)
215 PRK11058 GTPase HflX; Provisio 98.4 3.7E-07 8E-12 101.8 6.2 89 400-496 199-289 (426)
216 CHL00189 infB translation init 98.4 2.9E-06 6.4E-11 100.0 14.0 159 201-394 243-408 (742)
217 PRK05124 cysN sulfate adenylyl 98.4 3.1E-06 6.6E-11 95.8 13.5 90 287-388 127-217 (474)
218 PLN03071 GTP-binding nuclear p 98.4 5E-06 1.1E-10 84.5 13.1 88 288-394 83-170 (219)
219 cd04162 Arl9_Arfrp2_like Arl9/ 98.3 1.7E-06 3.8E-11 83.3 9.1 91 287-392 64-162 (164)
220 PF04548 AIG1: AIG1 family; I 98.3 6.8E-07 1.5E-11 90.4 6.3 62 400-465 2-64 (212)
221 PLN03127 Elongation factor Tu; 98.3 3.4E-06 7.3E-11 94.8 12.4 97 287-396 144-252 (447)
222 cd01883 EF1_alpha Eukaryotic e 98.3 4.6E-06 1E-10 84.6 12.3 89 287-385 97-194 (219)
223 cd01871 Rac1_like Rac1-like su 98.3 6.7E-06 1.5E-10 80.2 13.0 95 287-393 69-172 (174)
224 TIGR00491 aIF-2 translation in 98.3 4.3E-06 9.3E-11 96.7 13.3 104 270-392 77-212 (590)
225 PLN03126 Elongation factor Tu; 98.3 6.1E-06 1.3E-10 93.4 14.0 158 203-383 82-249 (478)
226 TIGR00993 3a0901s04IAP86 chlor 98.3 1.5E-06 3.2E-11 99.8 8.9 63 398-465 118-181 (763)
227 TIGR00487 IF-2 translation ini 98.3 7E-06 1.5E-10 95.0 14.6 155 202-393 87-247 (587)
228 COG1084 Predicted GTPase [Gene 98.3 3E-06 6.5E-11 89.9 10.4 163 196-394 162-334 (346)
229 TIGR00485 EF-Tu translation el 98.3 5E-06 1.1E-10 91.9 12.6 96 287-394 95-199 (394)
230 PRK09602 translation-associate 98.3 5.7E-06 1.2E-10 91.5 12.9 61 332-403 217-278 (396)
231 cd01881 Obg_like The Obg-like 98.3 1.1E-06 2.5E-11 83.9 6.4 84 403-495 1-86 (176)
232 TIGR02034 CysN sulfate adenyly 98.3 7.6E-06 1.6E-10 90.9 13.8 99 270-387 88-188 (406)
233 cd01852 AIG1 AIG1 (avrRpt2-ind 98.3 2.4E-06 5.1E-11 85.0 8.9 165 205-397 3-185 (196)
234 cd01874 Cdc42 Cdc42 subfamily. 98.3 8.2E-06 1.8E-10 79.6 12.5 95 287-393 69-172 (175)
235 PRK00454 engB GTP-binding prot 98.3 1.1E-06 2.5E-11 86.1 6.4 60 398-463 24-83 (196)
236 PRK09602 translation-associate 98.3 1.3E-06 2.7E-11 96.7 7.4 87 399-494 2-113 (396)
237 cd04163 Era Era subfamily. Er 98.3 1.4E-06 3.1E-11 81.3 6.8 91 399-496 4-95 (168)
238 cd01886 EF-G Elongation factor 98.3 8.9E-07 1.9E-11 93.1 5.9 133 400-545 1-146 (270)
239 TIGR00231 small_GTP small GTP- 98.3 4.8E-06 1E-10 76.5 10.2 53 332-392 108-160 (161)
240 PTZ00327 eukaryotic translatio 98.3 8.1E-06 1.8E-10 91.9 13.9 98 287-397 137-234 (460)
241 PRK05306 infB translation init 98.3 6.4E-06 1.4E-10 97.9 13.6 154 201-393 289-449 (787)
242 cd04134 Rho3 Rho3 subfamily. 98.3 5.2E-06 1.1E-10 81.9 10.9 92 287-394 68-172 (189)
243 cd04130 Wrch_1 Wrch-1 subfamil 98.3 6.7E-06 1.5E-10 79.4 11.3 90 287-392 68-170 (173)
244 cd04161 Arl2l1_Arl13_like Arl2 98.3 6.9E-06 1.5E-10 79.3 11.4 95 287-392 63-165 (167)
245 PRK04213 GTP-binding protein; 98.3 1.2E-06 2.5E-11 86.8 6.0 55 398-461 9-63 (201)
246 cd04115 Rab33B_Rab33A Rab33B/R 98.3 1.4E-05 3E-10 77.0 13.3 90 288-393 73-166 (170)
247 TIGR00483 EF-1_alpha translati 98.3 1.6E-05 3.4E-10 88.8 15.4 91 287-387 105-198 (426)
248 COG0370 FeoB Fe2+ transport sy 98.2 3E-06 6.6E-11 97.2 9.4 61 399-465 4-65 (653)
249 cd04121 Rab40 Rab40 subfamily. 98.2 1.9E-05 4E-10 78.7 14.0 90 287-394 75-165 (189)
250 cd04104 p47_IIGP_like p47 (47- 98.2 9E-06 2E-10 81.1 11.6 95 287-397 77-185 (197)
251 COG1163 DRG Predicted GTPase [ 98.2 1.6E-06 3.5E-11 91.7 6.4 50 333-396 240-289 (365)
252 PRK05433 GTP-binding protein L 98.2 8.3E-06 1.8E-10 94.8 12.8 167 204-397 9-185 (600)
253 cd01886 EF-G Elongation factor 98.2 6.7E-06 1.5E-10 86.5 10.9 77 287-381 84-160 (270)
254 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 1.1E-06 2.5E-11 83.4 4.6 110 400-528 2-115 (168)
255 smart00176 RAN Ran (Ras-relate 98.2 2.2E-05 4.8E-10 78.9 14.1 89 287-394 64-152 (200)
256 TIGR03680 eif2g_arch translati 98.2 1.2E-05 2.6E-10 89.3 13.1 97 287-396 100-196 (406)
257 cd04168 TetM_like Tet(M)-like 98.2 1.5E-05 3.2E-10 82.3 12.8 48 287-347 84-131 (237)
258 COG3596 Predicted GTPase [Gene 98.2 1.3E-06 2.8E-11 90.8 4.7 89 396-495 37-129 (296)
259 cd01897 NOG NOG1 is a nucleola 98.2 2.1E-06 4.5E-11 81.9 5.8 57 400-462 2-59 (168)
260 cd01879 FeoB Ferrous iron tran 98.2 1.3E-06 2.8E-11 82.0 4.1 83 403-495 1-86 (158)
261 cd01896 DRG The developmentall 98.2 5.2E-06 1.1E-10 85.4 8.7 85 400-493 2-87 (233)
262 cd01899 Ygr210 Ygr210 subfamil 98.2 4E-06 8.6E-11 90.2 7.9 85 401-494 1-110 (318)
263 PRK04000 translation initiatio 98.2 3E-05 6.6E-10 86.3 14.8 98 287-397 105-202 (411)
264 cd04170 EF-G_bact Elongation f 98.1 3.9E-05 8.4E-10 80.2 14.7 48 287-347 84-131 (268)
265 cd01878 HflX HflX subfamily. 98.1 3.9E-06 8.5E-11 83.4 6.8 89 399-495 42-132 (204)
266 COG4917 EutP Ethanolamine util 98.1 1.4E-05 3.1E-10 74.1 9.6 138 206-394 5-144 (148)
267 cd04171 SelB SelB subfamily. 98.1 4E-06 8.7E-11 79.0 6.4 83 400-495 2-86 (164)
268 cd01875 RhoG RhoG subfamily. 98.1 4.8E-05 1E-09 75.3 13.9 96 287-394 71-175 (191)
269 PF00025 Arf: ADP-ribosylation 98.1 1.1E-05 2.4E-10 78.9 9.2 96 287-393 78-173 (175)
270 cd01882 BMS1 Bms1. Bms1 is an 98.1 3.9E-05 8.4E-10 78.5 13.3 82 287-382 100-182 (225)
271 COG0012 Predicted GTPase, prob 98.1 5.6E-06 1.2E-10 89.5 7.4 86 399-493 3-107 (372)
272 cd01876 YihA_EngB The YihA (En 98.1 4.9E-06 1.1E-10 78.0 6.2 58 400-463 1-58 (170)
273 cd04129 Rho2 Rho2 subfamily. 98.1 2.6E-05 5.7E-10 76.6 11.5 91 288-394 70-171 (187)
274 PF01926 MMR_HSR1: 50S ribosom 98.1 1.5E-05 3.2E-10 72.2 8.8 104 206-341 3-116 (116)
275 TIGR01394 TypA_BipA GTP-bindin 98.1 3.8E-05 8.2E-10 89.2 14.2 168 205-397 4-192 (594)
276 cd00880 Era_like Era (E. coli 98.1 7.5E-06 1.6E-10 75.2 6.5 91 403-501 1-93 (163)
277 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.0 8.6E-05 1.9E-09 76.5 14.6 92 287-394 81-186 (232)
278 cd04104 p47_IIGP_like p47 (47- 98.0 5.6E-06 1.2E-10 82.6 5.6 65 399-464 2-66 (197)
279 cd04165 GTPBP1_like GTPBP1-lik 98.0 2.9E-05 6.3E-10 79.5 10.6 91 290-394 109-221 (224)
280 cd04131 Rnd Rnd subfamily. Th 98.0 8.4E-05 1.8E-09 73.0 13.5 91 287-393 69-173 (178)
281 COG1163 DRG Predicted GTPase [ 98.0 4.5E-06 9.7E-11 88.5 4.6 59 399-463 64-123 (365)
282 cd04133 Rop_like Rop subfamily 98.0 5.3E-05 1.1E-09 74.5 11.7 92 287-394 69-171 (176)
283 cd00881 GTP_translation_factor 98.0 6.4E-06 1.4E-10 79.5 5.1 115 400-527 1-126 (189)
284 TIGR00484 EF-G translation elo 98.0 8.5E-06 1.8E-10 96.3 7.0 133 399-544 11-156 (689)
285 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.0 0.00011 2.4E-09 72.6 13.8 91 287-393 73-177 (182)
286 TIGR00484 EF-G translation elo 98.0 2.9E-05 6.2E-10 91.8 11.4 78 287-382 95-172 (689)
287 PRK10218 GTP-binding protein; 98.0 5.1E-05 1.1E-09 88.2 13.1 97 287-398 88-197 (607)
288 cd04168 TetM_like Tet(M)-like 98.0 1.1E-05 2.5E-10 83.1 6.8 133 400-545 1-146 (237)
289 TIGR00231 small_GTP small GTP- 98.0 1.5E-05 3.2E-10 73.2 6.6 56 399-460 2-60 (161)
290 cd01890 LepA LepA subfamily. 98.0 1.1E-05 2.3E-10 77.9 5.8 87 400-496 2-103 (179)
291 cd01861 Rab6 Rab6 subfamily. 98.0 1.5E-05 3.2E-10 75.3 6.6 55 400-460 2-59 (161)
292 PRK12739 elongation factor G; 98.0 4E-05 8.6E-10 90.7 11.6 78 287-382 93-170 (691)
293 PRK00007 elongation factor G; 97.9 3.1E-05 6.8E-10 91.6 10.3 77 287-381 95-171 (693)
294 cd01851 GBP Guanylate-binding 97.9 1.3E-05 2.8E-10 82.0 6.1 63 399-465 8-75 (224)
295 PF05049 IIGP: Interferon-indu 97.9 5.4E-06 1.2E-10 90.6 3.4 120 397-527 34-153 (376)
296 cd04166 CysN_ATPS CysN_ATPS su 97.9 9.7E-06 2.1E-10 81.6 5.0 88 400-497 1-114 (208)
297 PRK00007 elongation factor G; 97.9 1.3E-05 2.7E-10 94.9 6.5 134 399-545 11-157 (693)
298 KOG1547 Septin CDC10 and relat 97.9 1.6E-05 3.5E-10 81.0 6.2 82 381-463 26-117 (336)
299 PRK04004 translation initiatio 97.9 5.9E-05 1.3E-09 87.5 11.8 92 287-392 91-214 (586)
300 TIGR02836 spore_IV_A stage IV 97.9 1.5E-05 3.3E-10 87.4 6.5 81 386-466 5-107 (492)
301 cd04167 Snu114p Snu114p subfam 97.9 9.6E-05 2.1E-09 74.5 11.8 86 287-385 91-192 (213)
302 TIGR00092 GTP-binding protein 97.9 2.3E-05 5E-10 85.6 7.7 87 399-493 3-107 (368)
303 KOG0462 Elongation factor-type 97.9 8.2E-05 1.8E-09 83.4 11.6 130 242-397 106-236 (650)
304 cd04170 EF-G_bact Elongation f 97.9 1.3E-05 2.8E-10 83.8 5.0 133 400-545 1-146 (268)
305 PTZ00099 rab6; Provisional 97.9 0.00011 2.3E-09 72.4 11.1 94 287-397 49-143 (176)
306 PF00071 Ras: Ras family; Int 97.9 0.00012 2.5E-09 69.4 10.8 89 288-393 69-158 (162)
307 KOG1491 Predicted GTP-binding 97.9 3E-05 6.4E-10 82.7 7.2 86 398-492 20-123 (391)
308 COG0481 LepA Membrane GTPase L 97.8 7.6E-05 1.6E-09 82.5 10.3 155 214-397 21-187 (603)
309 cd04169 RF3 RF3 subfamily. Pe 97.8 2.4E-05 5.2E-10 82.2 6.4 134 399-545 3-153 (267)
310 PTZ00258 GTP-binding protein; 97.8 9.7E-05 2.1E-09 81.5 10.9 110 332-465 220-337 (390)
311 PTZ00132 GTP-binding nuclear p 97.8 0.00045 9.7E-09 69.4 14.9 110 288-416 79-193 (215)
312 PRK12317 elongation factor 1-a 97.8 2E-05 4.2E-10 87.9 5.5 88 398-495 6-119 (425)
313 cd01885 EF2 EF2 (for archaea a 97.8 0.00014 3.1E-09 74.5 11.2 46 287-345 93-138 (222)
314 PRK12739 elongation factor G; 97.8 2.3E-05 4.9E-10 92.8 5.9 118 399-529 9-139 (691)
315 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.8 0.00032 6.9E-09 71.8 13.5 95 287-393 69-173 (222)
316 KOG2486 Predicted GTPase [Gene 97.8 4.5E-05 9.8E-10 79.5 7.1 111 398-514 136-250 (320)
317 PF00350 Dynamin_N: Dynamin fa 97.8 3.3E-05 7.1E-10 74.1 5.8 24 401-424 1-24 (168)
318 PRK12740 elongation factor G; 97.8 0.00019 4.2E-09 84.6 13.2 26 373-398 239-264 (668)
319 PRK09866 hypothetical protein; 97.8 6.5E-05 1.4E-09 86.5 8.8 71 450-528 230-302 (741)
320 COG0532 InfB Translation initi 97.8 0.00018 4E-09 80.8 12.0 101 270-394 63-168 (509)
321 KOG1489 Predicted GTP-binding 97.8 3.7E-05 8.1E-10 81.4 6.1 89 399-496 197-287 (366)
322 cd01884 EF_Tu EF-Tu subfamily. 97.8 3E-05 6.4E-10 77.7 5.2 117 399-527 3-130 (195)
323 cd01889 SelB_euk SelB subfamil 97.8 2.7E-05 5.9E-10 76.9 4.7 88 400-497 2-105 (192)
324 cd01891 TypA_BipA TypA (tyrosi 97.8 3E-05 6.5E-10 76.7 5.1 87 399-495 3-100 (194)
325 PTZ00141 elongation factor 1- 97.7 0.00027 5.9E-09 79.5 13.2 88 287-386 105-203 (446)
326 cd04145 M_R_Ras_like M-Ras/R-R 97.7 5.5E-05 1.2E-09 71.5 6.4 56 399-461 3-61 (164)
327 PRK13768 GTPase; Provisional 97.7 0.00021 4.5E-09 74.6 10.9 97 291-398 129-249 (253)
328 CHL00071 tufA elongation facto 97.7 5.2E-05 1.1E-09 84.3 6.6 119 397-527 11-140 (409)
329 PRK15467 ethanolamine utilizat 97.7 6.2E-05 1.3E-09 72.5 6.3 75 400-496 3-77 (158)
330 TIGR00437 feoB ferrous iron tr 97.7 0.00011 2.4E-09 85.4 9.3 81 405-495 1-84 (591)
331 cd01868 Rab11_like Rab11-like. 97.7 7.6E-05 1.6E-09 71.0 6.6 57 399-461 4-63 (165)
332 PRK00741 prfC peptide chain re 97.7 0.00057 1.2E-08 78.5 14.8 47 287-346 99-145 (526)
333 TIGR02528 EutP ethanolamine ut 97.7 0.00013 2.7E-09 67.9 7.8 113 400-541 2-116 (142)
334 KOG1490 GTP-binding protein CR 97.7 2.5E-05 5.3E-10 86.7 3.3 86 397-492 167-256 (620)
335 COG0536 Obg Predicted GTPase [ 97.7 7E-05 1.5E-09 80.1 6.5 85 400-493 161-247 (369)
336 TIGR00487 IF-2 translation ini 97.7 0.00013 2.8E-09 84.7 9.3 124 397-539 86-211 (587)
337 cd01850 CDC_Septin CDC/Septin. 97.7 8.5E-05 1.8E-09 78.4 7.0 65 399-463 5-76 (276)
338 cd04138 H_N_K_Ras_like H-Ras/N 97.7 7.7E-05 1.7E-09 69.9 6.0 55 400-461 3-60 (162)
339 cd04160 Arfrp1 Arfrp1 subfamil 97.6 6.5E-05 1.4E-09 71.5 5.3 84 400-495 1-85 (167)
340 cd04155 Arl3 Arl3 subfamily. 97.6 0.00011 2.3E-09 70.5 6.9 57 397-461 13-69 (173)
341 smart00178 SAR Sar1p-like memb 97.6 0.00012 2.5E-09 72.0 7.0 82 396-495 15-96 (184)
342 PRK13351 elongation factor G; 97.6 0.00052 1.1E-08 81.3 13.6 26 373-398 255-280 (687)
343 cd00154 Rab Rab family. Rab G 97.6 0.00012 2.6E-09 67.8 6.6 82 400-495 2-84 (159)
344 KOG0075 GTP-binding ADP-ribosy 97.6 0.00029 6.3E-09 67.1 8.9 151 207-394 25-180 (186)
345 smart00173 RAS Ras subfamily o 97.6 8.6E-05 1.9E-09 70.4 5.5 56 400-462 2-60 (164)
346 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 0.00013 2.7E-09 70.9 6.7 80 398-495 15-94 (174)
347 cd04139 RalA_RalB RalA/RalB su 97.6 0.00011 2.3E-09 69.3 5.7 55 400-461 2-59 (164)
348 cd04119 RJL RJL (RabJ-Like) su 97.6 0.00014 3.1E-09 68.5 6.7 56 400-461 2-60 (168)
349 PRK05506 bifunctional sulfate 97.6 7.5E-05 1.6E-09 87.5 5.6 102 386-497 11-141 (632)
350 PLN03127 Elongation factor Tu; 97.6 9.3E-05 2E-09 83.3 5.8 119 397-527 60-189 (447)
351 cd04157 Arl6 Arl6 subfamily. 97.6 0.00013 2.8E-09 68.8 6.0 80 400-495 1-80 (162)
352 cd01866 Rab2 Rab2 subfamily. 97.5 0.00015 3.1E-09 69.8 6.3 81 399-495 5-88 (168)
353 smart00175 RAB Rab subfamily o 97.5 0.00017 3.6E-09 68.0 6.6 81 400-496 2-85 (164)
354 cd01873 RhoBTB RhoBTB subfamil 97.5 0.00051 1.1E-08 68.7 10.4 90 287-393 84-193 (195)
355 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.5 0.00016 3.6E-09 68.8 6.6 80 400-495 4-86 (166)
356 cd04142 RRP22 RRP22 subfamily. 97.5 0.00011 2.5E-09 73.4 5.7 57 400-462 2-61 (198)
357 cd01863 Rab18 Rab18 subfamily. 97.5 0.00016 3.6E-09 68.3 6.5 82 400-495 2-84 (161)
358 cd04136 Rap_like Rap-like subf 97.5 0.00012 2.7E-09 69.0 5.5 56 400-462 3-61 (163)
359 cd04175 Rap1 Rap1 subgroup. T 97.5 0.00014 3.1E-09 69.1 6.0 56 400-462 3-61 (164)
360 KOG1490 GTP-binding protein CR 97.5 0.00053 1.1E-08 76.5 10.9 87 291-389 248-334 (620)
361 cd04106 Rab23_lke Rab23-like s 97.5 0.00018 3.8E-09 68.0 6.4 55 400-460 2-61 (162)
362 cd00878 Arf_Arl Arf (ADP-ribos 97.5 0.00015 3.2E-09 68.5 5.8 78 400-495 1-78 (158)
363 cd01860 Rab5_related Rab5-rela 97.5 0.00019 4.2E-09 67.8 6.2 58 399-460 2-60 (163)
364 PLN00043 elongation factor 1-a 97.5 0.0016 3.6E-08 73.3 14.6 100 270-386 93-203 (447)
365 PRK12735 elongation factor Tu; 97.5 0.00011 2.3E-09 81.5 5.0 119 397-527 11-140 (396)
366 COG5256 TEF1 Translation elong 97.5 0.0011 2.3E-08 72.8 12.5 102 270-387 93-202 (428)
367 PF00735 Septin: Septin; Inte 97.5 0.00019 4E-09 76.1 6.5 65 399-463 5-76 (281)
368 cd04123 Rab21 Rab21 subfamily. 97.5 0.00024 5.2E-09 66.6 6.5 81 400-496 2-85 (162)
369 cd04154 Arl2 Arl2 subfamily. 97.5 0.0002 4.4E-09 69.1 6.2 80 398-495 14-93 (173)
370 cd04113 Rab4 Rab4 subfamily. 97.5 0.00024 5.2E-09 67.2 6.5 56 400-461 2-60 (161)
371 KOG0410 Predicted GTP binding 97.5 0.00035 7.6E-09 74.3 8.0 85 288-394 255-339 (410)
372 cd04159 Arl10_like Arl10-like 97.4 0.00019 4.1E-09 66.6 5.4 55 400-461 1-55 (159)
373 cd01862 Rab7 Rab7 subfamily. 97.4 0.00027 5.8E-09 67.3 6.6 23 400-422 2-24 (172)
374 cd01864 Rab19 Rab19 subfamily. 97.4 0.00027 5.9E-09 67.4 6.6 24 399-422 4-27 (165)
375 cd04137 RheB Rheb (Ras Homolog 97.4 0.00019 4.1E-09 69.5 5.5 56 399-461 2-60 (180)
376 cd00876 Ras Ras family. The R 97.4 0.0002 4.3E-09 67.0 5.4 79 400-495 1-82 (160)
377 cd04156 ARLTS1 ARLTS1 subfamil 97.4 0.00022 4.8E-09 67.3 5.7 79 400-495 1-79 (160)
378 cd00879 Sar1 Sar1 subfamily. 97.4 0.00035 7.6E-09 68.3 7.0 58 396-461 17-74 (190)
379 cd01882 BMS1 Bms1. Bms1 is an 97.4 0.00024 5.1E-09 72.7 5.9 108 397-527 38-145 (225)
380 PRK00049 elongation factor Tu; 97.4 0.00017 3.8E-09 79.8 4.8 119 397-527 11-140 (396)
381 cd01867 Rab8_Rab10_Rab13_like 97.4 0.00035 7.7E-09 66.9 6.3 24 399-422 4-27 (167)
382 cd04144 Ras2 Ras2 subfamily. 97.3 0.00026 5.6E-09 69.8 5.4 55 400-461 1-58 (190)
383 PLN03118 Rab family protein; P 97.3 0.00033 7.1E-09 70.3 6.2 80 399-495 15-97 (211)
384 cd04158 ARD1 ARD1 subfamily. 97.3 0.00074 1.6E-08 65.1 8.2 76 400-495 1-78 (169)
385 cd04112 Rab26 Rab26 subfamily. 97.3 0.00037 8.1E-09 68.7 6.2 23 400-422 2-24 (191)
386 cd04169 RF3 RF3 subfamily. Pe 97.3 0.002 4.2E-08 67.8 11.9 49 287-348 91-139 (267)
387 CHL00189 infB translation init 97.3 0.00022 4.7E-09 84.5 5.2 114 397-529 243-361 (742)
388 cd04116 Rab9 Rab9 subfamily. 97.3 0.00047 1E-08 66.0 6.7 24 399-422 6-29 (170)
389 cd01865 Rab3 Rab3 subfamily. 97.3 0.00047 1E-08 65.9 6.7 23 400-422 3-25 (165)
390 cd04177 RSR1 RSR1 subgroup. R 97.3 0.00038 8.3E-09 66.8 5.8 56 400-462 3-61 (168)
391 cd04146 RERG_RasL11_like RERG/ 97.3 0.00026 5.6E-09 67.5 4.7 80 400-495 1-83 (165)
392 cd04161 Arl2l1_Arl13_like Arl2 97.3 0.00038 8.3E-09 67.1 5.9 78 400-495 1-78 (167)
393 TIGR00503 prfC peptide chain r 97.3 0.00091 2E-08 76.8 9.7 72 287-376 100-171 (527)
394 COG2262 HflX GTPases [General 97.3 0.00026 5.6E-09 77.5 5.0 90 399-496 193-284 (411)
395 COG2895 CysN GTPases - Sulfate 97.3 0.00096 2.1E-08 71.8 8.9 97 270-386 94-193 (431)
396 cd04135 Tc10 TC10 subfamily. 97.3 0.00056 1.2E-08 65.6 6.6 56 400-462 2-60 (174)
397 COG1217 TypA Predicted membran 97.3 0.0022 4.8E-08 71.1 11.9 155 213-397 16-196 (603)
398 TIGR00475 selB selenocysteine- 97.3 0.00041 8.9E-09 80.6 6.7 85 400-497 2-87 (581)
399 cd04114 Rab30 Rab30 subfamily. 97.3 0.00057 1.2E-08 65.1 6.6 81 399-495 8-91 (169)
400 PRK14845 translation initiatio 97.3 0.0055 1.2E-07 75.2 16.4 106 270-394 534-671 (1049)
401 cd00157 Rho Rho (Ras homology) 97.3 0.00062 1.4E-08 64.7 6.8 23 400-422 2-24 (171)
402 cd04140 ARHI_like ARHI subfami 97.3 0.00036 7.7E-09 66.8 5.0 60 399-462 2-61 (165)
403 PRK05306 infB translation init 97.2 0.00052 1.1E-08 82.0 7.4 114 397-529 289-403 (787)
404 KOG0092 GTPase Rab5/YPT51 and 97.2 0.0014 3E-08 65.1 9.1 98 284-398 71-169 (200)
405 cd04124 RabL2 RabL2 subfamily. 97.2 0.00068 1.5E-08 64.7 6.8 81 400-496 2-85 (161)
406 cd04151 Arl1 Arl1 subfamily. 97.2 0.0005 1.1E-08 65.2 5.7 78 400-495 1-78 (158)
407 TIGR00503 prfC peptide chain r 97.2 0.0006 1.3E-08 78.3 7.2 136 397-545 10-162 (527)
408 cd04176 Rap2 Rap2 subgroup. T 97.2 0.00057 1.2E-08 64.8 5.7 56 400-462 3-61 (163)
409 smart00053 DYNc Dynamin, GTPas 97.2 0.0014 3E-08 68.0 8.9 23 400-422 28-50 (240)
410 KOG0073 GTP-binding ADP-ribosy 97.2 0.0037 8.1E-08 60.8 11.0 152 204-391 18-173 (185)
411 cd04109 Rab28 Rab28 subfamily. 97.2 0.00078 1.7E-08 67.9 6.8 80 400-495 2-85 (215)
412 PF00009 GTP_EFTU: Elongation 97.2 9.9E-05 2.1E-09 72.8 0.2 117 399-528 4-135 (188)
413 cd04149 Arf6 Arf6 subfamily. 97.2 0.00068 1.5E-08 65.6 6.1 80 398-495 9-88 (168)
414 PRK13351 elongation factor G; 97.2 0.0004 8.6E-09 82.3 5.2 134 399-545 9-155 (687)
415 cd01893 Miro1 Miro1 subfamily. 97.2 0.00046 9.9E-09 66.2 4.7 57 400-461 2-58 (166)
416 TIGR00485 EF-Tu translation el 97.1 0.00031 6.8E-09 77.7 3.8 118 398-527 12-140 (394)
417 cd04101 RabL4 RabL4 (Rab-like4 97.1 0.00046 9.9E-09 65.4 4.3 22 400-421 2-23 (164)
418 cd04115 Rab33B_Rab33A Rab33B/R 97.1 0.00097 2.1E-08 64.1 6.6 87 399-500 3-92 (170)
419 cd04127 Rab27A Rab27a subfamil 97.1 0.00084 1.8E-08 64.8 6.2 24 399-422 5-28 (180)
420 cd04111 Rab39 Rab39 subfamily. 97.1 0.00082 1.8E-08 67.8 6.3 57 399-461 3-63 (211)
421 PRK12736 elongation factor Tu; 97.1 0.0005 1.1E-08 76.2 5.0 119 397-527 11-140 (394)
422 COG5257 GCD11 Translation init 97.1 0.0019 4.1E-08 68.8 8.8 94 289-398 108-204 (415)
423 PRK00741 prfC peptide chain re 97.1 0.00087 1.9E-08 77.0 6.9 135 398-545 10-161 (526)
424 cd04147 Ras_dva Ras-dva subfam 97.1 0.00074 1.6E-08 67.1 5.5 55 400-461 1-58 (198)
425 KOG1145 Mitochondrial translat 97.1 0.0047 1E-07 69.8 12.2 99 270-393 209-313 (683)
426 cd04108 Rab36_Rab34 Rab34/Rab3 97.1 0.0012 2.6E-08 64.0 6.7 80 400-495 2-84 (170)
427 cd04118 Rab24 Rab24 subfamily. 97.1 0.0011 2.4E-08 65.0 6.5 23 400-422 2-24 (193)
428 smart00174 RHO Rho (Ras homolo 97.1 0.001 2.2E-08 63.8 6.1 55 401-462 1-58 (174)
429 cd04110 Rab35 Rab35 subfamily. 97.1 0.001 2.3E-08 66.1 6.4 24 399-422 7-30 (199)
430 cd04103 Centaurin_gamma Centau 97.1 0.0028 6.1E-08 60.9 9.1 90 289-393 64-156 (158)
431 cd01870 RhoA_like RhoA-like su 97.1 0.0011 2.3E-08 63.7 6.2 24 399-422 2-25 (175)
432 PF10662 PduV-EutP: Ethanolami 97.0 0.0024 5.2E-08 61.2 8.3 112 399-541 2-117 (143)
433 cd04107 Rab32_Rab38 Rab38/Rab3 97.0 0.0013 2.8E-08 65.4 6.8 23 400-422 2-24 (201)
434 PLN03110 Rab GTPase; Provision 97.0 0.0014 3E-08 66.3 6.8 57 399-461 13-72 (216)
435 cd04122 Rab14 Rab14 subfamily. 97.0 0.0014 3.1E-08 62.5 6.5 24 399-422 3-26 (166)
436 PTZ00369 Ras-like protein; Pro 97.0 0.0011 2.3E-08 65.3 5.8 24 399-422 6-29 (189)
437 cd04105 SR_beta Signal recogni 97.0 0.0081 1.7E-07 60.4 12.1 56 288-348 69-125 (203)
438 cd04125 RabA_like RabA-like su 97.0 0.0015 3.3E-08 63.9 6.8 23 400-422 2-24 (188)
439 PTZ00133 ADP-ribosylation fact 97.0 0.0018 3.9E-08 63.7 7.2 79 398-494 17-95 (182)
440 PRK05124 cysN sulfate adenylyl 97.0 0.0012 2.6E-08 75.0 6.7 92 397-498 26-145 (474)
441 cd04130 Wrch_1 Wrch-1 subfamil 97.0 0.0017 3.6E-08 62.7 6.7 57 400-463 2-61 (173)
442 cd00882 Ras_like_GTPase Ras-li 97.0 0.00056 1.2E-08 61.6 3.2 79 403-497 1-82 (157)
443 cd01883 EF1_alpha Eukaryotic e 97.0 0.0008 1.7E-08 68.3 4.6 87 400-496 1-113 (219)
444 cd04132 Rho4_like Rho4-like su 97.0 0.0017 3.7E-08 63.3 6.7 23 400-422 2-24 (187)
445 KOG2655 Septin family protein 97.0 0.0012 2.5E-08 71.9 6.0 66 399-464 22-93 (366)
446 PRK10512 selenocysteinyl-tRNA- 97.0 0.0011 2.4E-08 77.4 6.3 113 400-527 2-116 (614)
447 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.9 0.0012 2.5E-08 64.8 5.4 58 399-461 4-63 (183)
448 TIGR01393 lepA GTP-binding pro 96.9 0.00098 2.1E-08 77.7 5.6 91 399-499 4-109 (595)
449 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.9 0.0039 8.4E-08 62.3 8.6 162 200-397 20-186 (221)
450 PF08477 Miro: Miro-like prote 96.9 0.0012 2.6E-08 59.4 4.6 59 400-461 1-61 (119)
451 cd00877 Ran Ran (Ras-related n 96.9 0.0021 4.5E-08 62.0 6.6 22 400-421 2-23 (166)
452 PF08477 Miro: Miro-like prote 96.9 0.0016 3.5E-08 58.6 5.4 49 288-343 71-119 (119)
453 cd04150 Arf1_5_like Arf1-Arf5- 96.9 0.0018 3.8E-08 62.0 5.9 78 400-495 2-79 (159)
454 TIGR00490 aEF-2 translation el 96.9 0.0015 3.3E-08 77.8 6.6 117 399-528 20-151 (720)
455 cd04117 Rab15 Rab15 subfamily. 96.9 0.0023 4.9E-08 61.2 6.6 56 400-461 2-60 (161)
456 cd01885 EF2 EF2 (for archaea a 96.9 0.0015 3.1E-08 67.0 5.5 116 400-528 2-138 (222)
457 cd04167 Snu114p Snu114p subfam 96.9 0.0011 2.3E-08 66.9 4.5 88 400-497 2-108 (213)
458 PRK10218 GTP-binding protein; 96.9 0.002 4.4E-08 75.1 7.3 119 399-530 6-135 (607)
459 COG5019 CDC3 Septin family pro 96.9 0.0025 5.3E-08 69.1 7.3 64 398-463 23-95 (373)
460 COG0012 Predicted GTPase, prob 96.9 0.0017 3.7E-08 70.7 6.2 97 203-302 3-109 (372)
461 cd04102 RabL3 RabL3 (Rab-like3 96.8 0.021 4.5E-07 57.7 13.4 55 287-347 74-144 (202)
462 TIGR00491 aIF-2 translation in 96.8 0.0012 2.5E-08 76.9 4.8 110 399-528 5-134 (590)
463 KOG1486 GTP-binding protein DR 96.8 0.0015 3.3E-08 67.4 4.8 73 377-462 48-121 (364)
464 COG2229 Predicted GTPase [Gene 96.8 0.019 4E-07 57.0 12.1 103 268-394 74-176 (187)
465 TIGR02034 CysN sulfate adenyly 96.8 0.0021 4.5E-08 71.6 6.4 90 400-499 2-119 (406)
466 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.8 0.0025 5.4E-08 61.9 6.1 57 399-462 3-62 (172)
467 TIGR01394 TypA_BipA GTP-bindin 96.8 0.0016 3.5E-08 75.8 5.4 117 399-528 2-129 (594)
468 PLN03108 Rab family protein; P 96.7 0.0027 5.9E-08 63.9 6.4 57 399-461 7-66 (210)
469 COG1100 GTPase SAR1 and relate 96.7 0.015 3.3E-07 58.0 11.6 98 288-394 75-183 (219)
470 cd04105 SR_beta Signal recogni 96.7 0.0025 5.4E-08 64.0 6.0 80 400-496 2-85 (203)
471 PLN03126 Elongation factor Tu; 96.7 0.0019 4.2E-08 73.3 5.6 92 396-497 79-181 (478)
472 COG1100 GTPase SAR1 and relate 96.7 0.0016 3.4E-08 65.0 4.2 60 399-462 6-66 (219)
473 PRK09601 GTP-binding protein Y 96.7 0.0014 3.1E-08 71.8 4.1 97 203-302 3-108 (364)
474 TIGR00483 EF-1_alpha translati 96.7 0.002 4.4E-08 72.0 5.4 89 398-496 7-121 (426)
475 cd01850 CDC_Septin CDC/Septin. 96.7 0.0077 1.7E-07 63.7 9.4 72 289-378 113-184 (276)
476 PRK12740 elongation factor G; 96.7 0.0017 3.7E-08 76.7 5.0 129 404-545 1-142 (668)
477 PLN03071 GTP-binding nuclear p 96.7 0.0033 7.1E-08 63.9 6.4 60 398-463 13-75 (219)
478 cd01874 Cdc42 Cdc42 subfamily. 96.7 0.004 8.7E-08 60.7 6.7 57 400-463 3-62 (175)
479 TIGR00991 3a0901s02IAP34 GTP-b 96.7 0.0054 1.2E-07 65.8 8.2 129 200-348 36-169 (313)
480 KOG0461 Selenocysteine-specifi 96.7 0.0088 1.9E-07 64.3 9.5 94 288-394 91-191 (522)
481 cd01900 YchF YchF subfamily. 96.6 0.0014 2.9E-08 69.4 3.3 94 206-302 2-104 (274)
482 cd04162 Arl9_Arfrp2_like Arl9/ 96.6 0.003 6.4E-08 60.8 5.4 79 401-496 2-80 (164)
483 PLN00223 ADP-ribosylation fact 96.6 0.0033 7.2E-08 61.8 5.8 80 398-495 17-96 (181)
484 smart00177 ARF ARF-like small 96.6 0.0037 8E-08 60.8 6.1 80 398-495 13-92 (175)
485 cd04143 Rhes_like Rhes_like su 96.6 0.003 6.4E-08 65.7 5.7 55 400-461 2-59 (247)
486 KOG0394 Ras-related GTPase [Ge 96.6 0.019 4.1E-07 57.0 10.7 159 205-393 12-175 (210)
487 PTZ00416 elongation factor 2; 96.6 0.009 1.9E-07 72.4 10.5 46 287-345 112-157 (836)
488 cd01871 Rac1_like Rac1-like su 96.6 0.0048 1E-07 60.1 6.6 24 399-422 2-25 (174)
489 KOG0410 Predicted GTP binding 96.6 0.0013 2.8E-08 70.1 2.7 59 399-463 179-239 (410)
490 PRK07560 elongation factor EF- 96.5 0.0025 5.3E-08 76.2 4.8 117 399-528 21-152 (731)
491 KOG2486 Predicted GTPase [Gene 96.5 0.0041 8.8E-08 65.3 5.7 160 206-394 140-314 (320)
492 PRK09435 membrane ATPase/prote 96.5 0.0063 1.4E-07 66.1 7.4 60 336-396 198-260 (332)
493 cd04134 Rho3 Rho3 subfamily. 96.5 0.0061 1.3E-07 60.0 6.5 23 400-422 2-24 (189)
494 COG3276 SelB Selenocysteine-sp 96.4 0.016 3.4E-07 64.3 10.1 92 287-395 70-161 (447)
495 cd04148 RGK RGK subfamily. Th 96.4 0.0039 8.4E-08 63.4 5.2 22 400-421 2-23 (221)
496 cd04126 Rab20 Rab20 subfamily. 96.4 0.0053 1.2E-07 62.8 6.2 78 400-495 2-79 (220)
497 PTZ00416 elongation factor 2; 96.4 0.0035 7.7E-08 75.9 5.4 118 398-528 19-157 (836)
498 cd04131 Rnd Rnd subfamily. Th 96.4 0.0078 1.7E-07 59.1 6.8 24 399-422 2-25 (178)
499 KOG0078 GTP-binding protein SE 96.4 0.024 5.3E-07 57.2 10.2 90 287-393 81-171 (207)
500 TIGR00101 ureG urease accessor 96.4 0.0081 1.8E-07 60.5 6.9 53 336-394 141-194 (199)
No 1
>PRK13796 GTPase YqeH; Provisional
Probab=100.00 E-value=1.3e-67 Score=571.66 Aligned_cols=332 Identities=32% Similarity=0.572 Sum_probs=282.6
Q ss_pred ceeecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005972 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~ 324 (666)
.++|||||+++|||++.+ ..+++.+|.+.+... ....++|++|||++|+.++.... |.++.
T Consensus 34 ~~~C~RC~~l~hy~~~~~----~~~~~~~~~~~l~~i------~~~~~lIv~VVD~~D~~~s~~~~--------L~~~~- 94 (365)
T PRK13796 34 EVYCQRCFRLKHYNEIQD----VSLTDDDFLKLLNGI------GDSDALVVNVVDIFDFNGSWIPG--------LHRFV- 94 (365)
T ss_pred CeEchhhhhhhccCcccC----CCCCHHHHHHHHHhh------cccCcEEEEEEECccCCCchhHH--------HHHHh-
Confidence 579999999999999865 346777887766542 12244999999999998775432 22211
Q ss_pred hhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEE
Q 005972 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vv 404 (666)
.++|+++|+||+||+++....+.+..|++.+++..|+. +.+++++||++++|+++|++.|.+++. +.++++|
T Consensus 95 ------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~-~~~v~~vSAk~g~gI~eL~~~I~~~~~-~~~v~vv 166 (365)
T PRK13796 95 ------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR-PVDVVLISAQKGHGIDELLEAIEKYRE-GRDVYVV 166 (365)
T ss_pred ------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-cCcEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEE
Confidence 24579999999999987666677888998888777753 457999999999999999999988754 5689999
Q ss_pred eecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhc
Q 005972 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKEL 484 (666)
Q Consensus 405 G~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel 484 (666)
|+||||||||||+|++........+++|..||||++.+.++ ++.+..|+||||+..++++.+.|++++++.+.|.+++
T Consensus 167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~i 244 (365)
T PRK13796 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--LDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKEI 244 (365)
T ss_pred cCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--cCCCcEEEECCCccccchhhhcCCHHHHhhcCCCccc
Confidence 99999999999999976533334567899999999998876 6667899999999999888888999999999999999
Q ss_pred CceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcCCCCCCcccccccCCccc
Q 005972 485 QPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWKD 564 (666)
Q Consensus 485 ~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L~PP~~~~~~~~l~~~~~ 564 (666)
+|++|+++++|++++|||+|+|++++.. ..|++|+++++++|+|++++|+++|++|+|.+|.||..+ ++.++++|++
T Consensus 245 ~p~~~~l~~gq~l~~ggl~r~d~~~~~~--~~~~~~~~~~l~~H~t~~e~a~~~~~~~~g~~l~pp~~~-~~~~~~~~~~ 321 (365)
T PRK13796 245 KPKTYQLNEEQTLFLGGLARFDYVSGGR--RSFTAYFDNNLNIHRTKLEKADALYEKHLGDLLTPPTKE-ELEDFPPLVR 321 (365)
T ss_pred CceEEEECCCCEEEEeeEEEEEEecCCc--cEEEEEcCCCceeeeccccchhHHHHhhCCCCCCCCchh-HHhhccCcee
Confidence 9999999999999999999999998753 358999999999999999999999999999999999764 5667899999
Q ss_pred eEEEEcCCCCCCccccEEEcccceEEeeccCceEEEEEeeCCeeEEEeCCCC
Q 005972 565 RKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 565 ~~~~i~~~~~~~~~~DIvIsGLGWisv~~~g~~~i~v~tP~Gv~v~~R~pli 616 (666)
++|.+.+ .+||||+|||||+|++ .+.+++|+|+||+|++|+|||
T Consensus 322 ~~~~~~~------~~Divi~glGwi~v~~--~~~~~~~~p~gv~v~~R~~li 365 (365)
T PRK13796 322 HEFTIKE------KTDIVFSGLGWITVPG--GAKVAAWAPKGVDVVIRKALI 365 (365)
T ss_pred EEEEECC------cccEEEcCCceEEECC--CeEEEEEecCCceEEeecccC
Confidence 9999953 4899999999999985 688999999999999999996
No 2
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=100.00 E-value=1.4e-64 Score=547.19 Aligned_cols=333 Identities=32% Similarity=0.600 Sum_probs=284.4
Q ss_pred ceeecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005972 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~ 324 (666)
..+|||||+|+|||++.+. .+++.+|.+.+.. ....+++|++|+|++|++++....+. +.+
T Consensus 28 ~~~C~RC~~l~hy~~~~~~----~~~~e~f~~~l~~------~~~~~~~Il~VvD~~d~~~s~~~~l~----~~~----- 88 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQDV----ELNDDDFLNLLNS------LGDSNALIVYVVDIFDFEGSLIPELK----RFV----- 88 (360)
T ss_pred CeeecchhhhhccCccccC----CCCHHHHHHHHhh------cccCCcEEEEEEECcCCCCCccHHHH----HHh-----
Confidence 4689999999999998663 3567777765544 33467899999999999988654322 211
Q ss_pred hhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEE
Q 005972 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vv 404 (666)
..+|+++|+||+||+++......+..|++.+.++.|+. ..+++++||++|+|+++|++.|.++.. +.++++|
T Consensus 89 ------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~-~~~i~~vSAk~g~gv~eL~~~l~~~~~-~~~v~~v 160 (360)
T TIGR03597 89 ------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK-PVDIILVSAKKGNGIDELLDKIKKARN-KKDVYVV 160 (360)
T ss_pred ------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-cCcEEEecCCCCCCHHHHHHHHHHHhC-CCeEEEE
Confidence 23589999999999988766677889988777777753 456999999999999999999988754 4699999
Q ss_pred eecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhc
Q 005972 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKEL 484 (666)
Q Consensus 405 G~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel 484 (666)
|+||||||||||+|++........+++|..||||++.+.++ ++.+..+|||||+..++++...+++++++.+.+.+++
T Consensus 161 G~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i 238 (360)
T TIGR03597 161 GVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--LDDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEI 238 (360)
T ss_pred CCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--eCCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCcc
Confidence 99999999999999987654444578899999999998876 5667899999999999888888888888888999999
Q ss_pred CceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcCCCCCCcccccccCCccc
Q 005972 485 QPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWKD 564 (666)
Q Consensus 485 ~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L~PP~~~~~~~~l~~~~~ 564 (666)
++++|+++++|++++||++|+|++++. ...|++|+++.+++|+|++++|+++|++|+|.+|.||.. +++..+++|++
T Consensus 239 ~~~~~~l~~~q~~~~ggl~~~d~~~~~--~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~~l~pp~~-~~~~~~~~~~~ 315 (360)
T TIGR03597 239 KPKTYQLNPNQTLFLGGLARFDYLKGE--KTSFTFYVSNELNIHRTKLENADELYNKHLGNLLSPPCL-DDKFNLPELVF 315 (360)
T ss_pred CceEEEeCCCCEEEEceEEEEEEecCC--ceEEEEEccCCceeEeechhhhHHHHHhhcCCcCCCCCh-HHHHhccCcee
Confidence 999999999999999999999999875 346899999999999999999999999999999999954 45677899999
Q ss_pred eEEEEcCCCCCCccccEEEcccceEEeeccCceEEEEEeeCCeeEEEeCCCC
Q 005972 565 RKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 565 ~~~~i~~~~~~~~~~DIvIsGLGWisv~~~g~~~i~v~tP~Gv~v~~R~pli 616 (666)
++|.+.+ .+||||+|||||+|++ |.+.+++|+|+||+|++|+|||
T Consensus 316 ~~~~~~~------~~divi~glGwi~v~~-~~~~~~~~~p~gv~v~~R~~li 360 (360)
T TIGR03597 316 HTFTIKE------KTDIVFSGLGWITVKR-GGAKVKVYAPKGVGVSLRKALI 360 (360)
T ss_pred EEEEECC------cccEEEecCcEEEEec-CCEEEEEEeCCceEEEEecccC
Confidence 9999963 4899999999999995 6689999999999999999996
No 3
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2.3e-61 Score=523.11 Aligned_cols=403 Identities=42% Similarity=0.631 Sum_probs=350.7
Q ss_pred CceeecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHH-----HHHHH
Q 005972 244 EVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAK-----SLFKK 318 (666)
Q Consensus 244 ~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~-----~I~~~ 318 (666)
.+.||+||+.++||+.++.+..+...|+++|.....-.+.. ...--.+|+.|+|+.+|.|+++..... .+++.
T Consensus 155 ~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~kt--gyg~eeLI~~lvd~~df~Gdf~lvg~tnvgks~~fn~ 232 (572)
T KOG1249|consen 155 RPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKT--GYGIEELIVMLVDIVDFRGDFYLVGATNVGKSTLFNA 232 (572)
T ss_pred cchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhh--cccHHHHHHHhhheeeccCceeeeeecccchhhHHHH
Confidence 48899999999999999999999999999998766555554 555667999999999999998744322 22333
Q ss_pred HHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 319 LEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 319 L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
|... +.. +.+.+.++.+.||+|..+...+..++.-|....++..+..+...++.+||++.+|..+|+.........+
T Consensus 233 ll~s--D~c-~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~ag~~ 309 (572)
T KOG1249|consen 233 LLES--DLC-SVNAPKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGDAGKA 309 (572)
T ss_pred Hhhh--ccc-cccccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhccccc
Confidence 2221 111 2234678999999999998887777777877666666655556688999999999999999999888888
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+.|+.||.++.||+++||+|.......+.+++.++.||||.+.+++.+++..+-++|||||+++++++..+|+.+++..+
T Consensus 310 ~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v 389 (572)
T KOG1249|consen 310 GPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNV 389 (572)
T ss_pred cchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhc
Confidence 99999999999999999999976666777788899999999999998788889999999999999999999999999999
Q ss_pred HhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcCC--CCCCcccc
Q 005972 479 EIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQ--PPIGQDRA 556 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L~--PP~~~~~~ 556 (666)
.|++.++|++|.+++|+++|+|||+|||+++.+..+.+||+|+++.+++|++++++|++||++|+|..|. ||.+++||
T Consensus 390 ~p~~~lrprtf~vkpG~sl~iGGl~RLDilqa~~~~~~~Tv~as~~Lplhi~~t~~Ae~~y~~~~G~rll~vPp~genRm 469 (572)
T KOG1249|consen 390 TPRRVLRPRTFRVKPGYSLFIGGLVRLDILQASVETQYFTVFASEQLPLHIGPTEEAEAFYEKHLGTRLLLVPPGGENRM 469 (572)
T ss_pred CcccccccceEEcCCCcEEEEeeeEEeehhhccccceEEEEEecCcceeeecchhhHHHHHHHhcCCeeeecCCcchhhH
Confidence 9999999999999999999999999999999988777999999999999999999999999999999876 99999999
Q ss_pred cccCCccceEEEE-cCCCCCCc-cccEEEcccceEEeeccCceEEEEEeeCCeeEEEe-CCCCCCcccccccCCcchhHH
Q 005972 557 SELGTWKDRKLKV-SGTSWDVN-GIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLR-EPLVLDRAPFLERPGFWLPKA 633 (666)
Q Consensus 557 ~~l~~~~~~~~~i-~~~~~~~~-~~DIvIsGLGWisv~~~g~~~i~v~tP~Gv~v~~R-~pli~~~a~~~e~~~~~~~~~ 633 (666)
.++|.|+.+++.+ .|.+|+.. ++||+|||||||+|++.+.+++++|||+|.+|++| +||++.+|..+ ||++||+
T Consensus 470 ~ewpgl~~k~~~~~~G~~~d~~~~~DI~lSslGWvsv~~~~~~~L~~~Tp~~~~it~Ri~pllP~~a~~~---G~~i~~S 546 (572)
T KOG1249|consen 470 TEWPGLQGKDGEVMEGRNWDERGSCDIALSSLGWVSVTLKGDATLRAWTPEGAGITARIPPLLPYRASLF---GKRIPKS 546 (572)
T ss_pred hhCCCcccccceeecccccccccccceEecccceEEeecCcceeecccccccCceEEecCcccccchhhc---ceecccc
Confidence 9999999999999 89999998 89999999999999999999999999999999999 88888888887 9999999
Q ss_pred hhHhhh--hhhHHHHHHHHhhhh
Q 005972 634 ISDALG--SKSKLEAKRRKKLEE 654 (666)
Q Consensus 634 ~~~~~~--~~~~~~~~~~~~~~~ 654 (666)
++.... +-+-+..++|+|.+.
T Consensus 547 ~ay~~q~~~~p~~~k~~R~k~~k 569 (572)
T KOG1249|consen 547 VAYKTQPIQFPVVIKRVRKKKRK 569 (572)
T ss_pred eeeeecccCcchHHHHhhhhhcc
Confidence 999998 445555555665544
No 4
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=308.35 Aligned_cols=278 Identities=22% Similarity=0.233 Sum_probs=214.0
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cc------h
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PD------F 272 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~------~ 272 (666)
...|+||||||||||| |||.++|.++++.-+-. ||+|+|+........+.+ ++ .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGv----------------TRDr~y~~~~~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGV----------------TRDRIYGDAEWLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCC----------------ccCCccceeEEcCceEEEEECCCCCcCCch
Confidence 4567899999997766 99999998888776544 999999999887666654 22 2
Q ss_pred hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 273 DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 273 d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
.+.+.|..++.. ++..+|+|+||||++. |..+ .++.+.++|++ .++|+|||+||+|-...+.
T Consensus 68 ~l~~~i~~Qa~~--Ai~eADvilfvVD~~~--Git~--~D~~ia~~Lr~---------~~kpviLvvNK~D~~~~e~--- 129 (444)
T COG1160 68 ELQELIREQALI--AIEEADVILFVVDGRE--GITP--ADEEIAKILRR---------SKKPVILVVNKIDNLKAEE--- 129 (444)
T ss_pred HHHHHHHHHHHH--HHHhCCEEEEEEeCCC--CCCH--HHHHHHHHHHh---------cCCCEEEEEEcccCchhhh---
Confidence 477888888888 8999999999999998 4443 46778888875 4579999999999873222
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC-----------CCccEEEEeecCCChhhHHHhhhcc
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-----------PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~-----------~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
....| .++| +.++++|||.+|.|+.+|++.|.+.++ ..+++++||+||||||||+|+|++.
T Consensus 130 ~~~ef-----yslG---~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilge 201 (444)
T COG1160 130 LAYEF-----YSLG---FGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGE 201 (444)
T ss_pred hHHHH-----HhcC---CCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccC
Confidence 11222 3677 678999999999999999999988862 1368999999999999999999998
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCCh-hhHHHHHhhhhcCceeEEecCCCcccc
Q 005972 422 EGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNR-DEQKMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 422 ~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~-~~~~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
..+.+ |+.||||||.+.....++. .+.+|||.|+.+...+...+.- .-.+....-...+.+.+++++.+.+.-
T Consensus 202 eR~Iv-----~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~ 276 (444)
T COG1160 202 ERVIV-----SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISE 276 (444)
T ss_pred ceEEe-----cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchH
Confidence 87655 6999999999988765544 6899999999987765432100 012223344666788999999999998
Q ss_pred cceEEEeecccccceEEEEEecCCccccccc
Q 005972 500 GGLMRLDLDQASVETIYVTVWASPNVSLHLG 530 (666)
Q Consensus 500 ggl~rld~l~~~~~~v~~~v~~s~~l~~h~t 530 (666)
.++-.+.+.....+.+ +.+.|+-+.|..
T Consensus 277 qD~~ia~~i~~~g~~~---vIvvNKWDl~~~ 304 (444)
T COG1160 277 QDLRIAGLIEEAGRGI---VIVVNKWDLVEE 304 (444)
T ss_pred HHHHHHHHHHHcCCCe---EEEEEccccCCc
Confidence 8888888777666664 345677776653
No 5
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=6.2e-32 Score=288.52 Aligned_cols=306 Identities=27% Similarity=0.332 Sum_probs=225.8
Q ss_pred eecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhh
Q 005972 247 VCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDA 326 (666)
Q Consensus 247 vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~ 326 (666)
.|+||++.+||..+.. +|++.. ...+++.+ .+..+|+|+.|+|+++|.++....+.+.+
T Consensus 1 ~~~~~~~~~~~~~i~~------~~g~~~--k~~~~~~~--~~~~~d~vvevvDar~P~~s~~~~l~~~v----------- 59 (322)
T COG1161 1 QCQRCFRLKHYNKIQW------FPGHMK--KAKRQLKE--VLKSVDVVVEVVDARDPLGTRNPELERIV----------- 59 (322)
T ss_pred CchhhhHHHhcccccC------CCCchH--HHHHHHHH--hcccCCEEEEEEeccccccccCccHHHHH-----------
Confidence 4999999999988754 244321 12233334 56779999999999999999876544332
Q ss_pred hhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHH--------HHHHhhcCC-
Q 005972 327 KLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLL--------AFIKELAGP- 397 (666)
Q Consensus 327 ~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl--------~~I~~~l~~- 397 (666)
+.++.++|+||+||+|... +.+|++++.++.+.. .+.+|++.+.+...+. +.+..+.+.
T Consensus 60 ----~~k~~i~vlNK~DL~~~~~----~~~W~~~~~~~~~~~----~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 127 (322)
T COG1161 60 ----KEKPKLLVLNKADLAPKEV----TKKWKKYFKKEEGIK----PIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKG 127 (322)
T ss_pred ----ccCCcEEEEehhhcCCHHH----HHHHHHHHHhcCCCc----cEEEEeecccCccchHHHHHHHHHHHHHHHhhcC
Confidence 2345699999999999876 899998887665543 7788999988888777 455554443
Q ss_pred ----CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChh
Q 005972 398 ----RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRD 473 (666)
Q Consensus 398 ----~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~ 473 (666)
..+|++||+||||||||||+|+++..+ ++|+.||+|++.+.+. +..++.|+||||+..+..... +.
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~-----~~s~~PG~Tk~~q~i~--~~~~i~LlDtPGii~~~~~~~---~~ 197 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVA-----KTSNRPGTTKGIQWIK--LDDGIYLLDTPGIIPPKFDDD---EL 197 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccce-----eeCCCCceecceEEEE--cCCCeEEecCCCcCCCCccch---HH
Confidence 378999999999999999999998764 5579999999999887 677899999999999998653 33
Q ss_pred hHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcCCCCCCc
Q 005972 474 EQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQ 553 (666)
Q Consensus 474 ~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L~PP~~~ 553 (666)
...-+.+...++..++..+..+...++++. ++........ +..|.++. .|.++.+.+.+++.++.|..+.++...
T Consensus 198 v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~-~~~~~~~~~~--~~~y~~~~--~~~~~~~~~l~~~a~~rg~~l~~~g~~ 272 (322)
T COG1161 198 VLLKLAPKGEIKDPVLPADEVAERLLGGLL-IDEHYGEKLN--ITRYESNP--IHRTDPEEFLELIAKKRGWLLLKGGEP 272 (322)
T ss_pred HhhccccccccCccccChHHHHHHHHhhhh-hhhhhhHhhC--Cccccccc--ccccCHHHHHHHHHHHhhhhhcCCCCc
Confidence 444556788888888888888888888887 5444332222 22455555 788888999999999999878777632
Q ss_pred ccccccCCccceEEEEcCCCCCCccccEEEcccceEEeeccC--ceEEEEEeeCCeeEEEeCCC
Q 005972 554 DRASELGTWKDRKLKVSGTSWDVNGIDIAAAGLGWFSLGLKG--EASLTLWTYDGIEITLREPL 615 (666)
Q Consensus 554 ~~~~~l~~~~~~~~~i~~~~~~~~~~DIvIsGLGWisv~~~g--~~~i~v~tP~Gv~v~~R~pl 615 (666)
+ +.+..+.+ --|++.+||||+++-... ......|.|+++.+.+|.++
T Consensus 273 d-------~~~~~~~~--------~~d~~~gklg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (322)
T COG1161 273 D-------LERAAETI--------LKDIRNGKLGWFSLEEPEDNIEVVTIRDPEGSVVKARKSL 321 (322)
T ss_pred c-------HHHHHHHH--------HHHHHhCCcceeecCCccccchhhhhhccchhhhhhhccc
Confidence 2 11111111 129999999999996332 25577788999888888764
No 6
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.97 E-value=4.3e-30 Score=253.51 Aligned_cols=186 Identities=43% Similarity=0.670 Sum_probs=138.8
Q ss_pred ecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhh
Q 005972 248 CARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAK 327 (666)
Q Consensus 248 CqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~ 327 (666)
|+|||+|+|||++... .+|..++.+.+ +.. ...++|+|++|+|++++..+.... +.. ..
T Consensus 1 C~rC~~l~~~~~~~~~----~~~~~~~~~~~---l~~--~~~~ad~il~VvD~~~~~~~~~~~----l~~--~~------ 59 (190)
T cd01855 1 CQRCFRLKHYNKIDPV----EIPDEDFILNL---LSS--ISPKKALVVHVVDIFDFPGSLIPR----LRL--FG------ 59 (190)
T ss_pred CcchhhhhccCccccc----cCChHHHHHHH---HHh--cccCCcEEEEEEECccCCCccchh----HHH--hc------
Confidence 9999999999998753 33555442222 222 567899999999999977554422 111 10
Q ss_pred hhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHH-HHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEee
Q 005972 328 LSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR-AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGA 406 (666)
Q Consensus 328 ~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~-~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~ 406 (666)
..+|+++|+||+|++++......+..|.+.. .+..+.. +..++++||++|+|+++|++.|.++++.+.+++++|.
T Consensus 60 ---~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~ 135 (190)
T cd01855 60 ---GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK-PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA 135 (190)
T ss_pred ---CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC-cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence 2358999999999987655444455665211 1233321 3469999999999999999999999988889999999
Q ss_pred cCCChhhHHHhhhcccccee---ecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005972 407 QNAGKSTLINTFAKKEGVKV---SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 407 ~NVGKSTLiN~L~~~~~~~~---~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
||||||||||+|++...... ..+++|..||||++.+.+. ++.+++|||||||
T Consensus 136 ~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~~~~~~DtPG~ 190 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--LGNGKKLYDTPGI 190 (190)
T ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe--cCCCCEEEeCcCC
Confidence 99999999999998664433 3467789999999998876 5557899999997
No 7
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.93 E-value=4.4e-25 Score=211.61 Aligned_cols=148 Identities=31% Similarity=0.401 Sum_probs=114.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+++++|+|++|+|++++.+..... +...|... ...+|+|+|+||+||+++.. +..|+..+.+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~----i~~~l~~~-------~~~~p~ilVlNKiDl~~~~~----~~~~~~~~~~~~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKH----VEEYLKKE-------KPHKHLIFVLNKCDLVPTWV----TARWVKILSKEYP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHH----HHHHHHhc-------cCCCCEEEEEEchhcCCHHH----HHHHHHHHhcCCc
Confidence 678899999999999987654433 33444321 12368999999999986542 6678777654322
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc-----CCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA-----GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI 441 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l-----~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~ 441 (666)
+. ++++||+++.|+++|++.|.+++ +.+.+++++|+||||||||||+|++.... ++++.||||++.
T Consensus 70 ---~~-~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~-----~~~~~~g~T~~~ 140 (157)
T cd01858 70 ---TI-AFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVC-----KVAPIPGETKVW 140 (157)
T ss_pred ---EE-EEEeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCce-----eeCCCCCeeEeE
Confidence 22 68899999999999999998764 23457889999999999999999987644 446899999998
Q ss_pred EEEeeEeCCceEEEECCCC
Q 005972 442 LRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 442 ~~~~~~l~~~~~liDTPGi 460 (666)
..+. ++.++.++||||+
T Consensus 141 ~~~~--~~~~~~liDtPGi 157 (157)
T cd01858 141 QYIT--LMKRIYLIDCPGV 157 (157)
T ss_pred EEEE--cCCCEEEEECcCC
Confidence 7765 5677999999997
No 8
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.6e-24 Score=241.14 Aligned_cols=274 Identities=18% Similarity=0.114 Sum_probs=174.0
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh-----
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d----- 273 (666)
+..++||+||||||+| |++.+.+.++.... ...++.+.++.+......+. .|+.+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~----------------~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 102 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDV----------------PGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG 102 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCC----------------CCCCEeeEEEEEEECCcEEEEEeCCCcCCcchh
Confidence 4568899999996655 99998774433222 12244444444332222222 25543
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+..++.. ++..+|+||+|+|+.+... ..+..+...|++ ..+|+++|+||+|+..... .
T Consensus 103 ~~~~~~~~~~~--~~~~aD~il~VvD~~~~~s----~~~~~i~~~l~~---------~~~piilV~NK~Dl~~~~~--~- 164 (472)
T PRK03003 103 LQASVAEQAEV--AMRTADAVLFVVDATVGAT----ATDEAVARVLRR---------SGKPVILAANKVDDERGEA--D- 164 (472)
T ss_pred HHHHHHHHHHH--HHHhCCEEEEEEECCCCCC----HHHHHHHHHHHH---------cCCCEEEEEECccCCccch--h-
Confidence 22334444444 6678999999999998432 123455566654 3468999999999864322 1
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC----------CccEEEEeecCCChhhHHHhhhcccc
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP----------RGNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~----------~~~v~vvG~~NVGKSTLiN~L~~~~~ 423 (666)
.... ..+| +..++++||++|.|+++|++.|.+.+++ ..+|+++|.||||||||+|+|++...
T Consensus 165 ~~~~-----~~~g---~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~ 236 (472)
T PRK03003 165 AAAL-----WSLG---LGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER 236 (472)
T ss_pred hHHH-----HhcC---CCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 1111 1344 3457899999999999999998766543 25789999999999999999998654
Q ss_pred ceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH---HHhhhhcCceeEEecCCCcccc
Q 005972 424 VKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM---VEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 424 ~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~---~~~~kel~~~~f~l~~~~~l~l 499 (666)
.. ++..||||++.+.....++ ..+.++||||+....... ...+.... ....+..+...++++.......
T Consensus 237 ~~-----~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~ 309 (472)
T PRK03003 237 SV-----VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQA--SGHEYYASLRTHAAIEAAEVAVVLIDASEPISE 309 (472)
T ss_pred cc-----ccCCCCccCCcceEEEEECCEEEEEEECCCcccccccc--chHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCH
Confidence 32 3689999998765443343 357899999996543221 11111111 1234667888999998777666
Q ss_pred cceEEEeecccccceEEEEEecCCccccc
Q 005972 500 GGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 500 ggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
..+..+..+.....++ +.+.||.++.
T Consensus 310 ~~~~~~~~~~~~~~pi---IiV~NK~Dl~ 335 (472)
T PRK03003 310 QDQRVLSMVIEAGRAL---VLAFNKWDLV 335 (472)
T ss_pred HHHHHHHHHHHcCCCE---EEEEECcccC
Confidence 6655555544444454 3456777764
No 9
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=3.4e-24 Score=236.58 Aligned_cols=273 Identities=21% Similarity=0.199 Sum_probs=179.2
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh-----HHH
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD-----FDR 276 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d-----~~~ 276 (666)
++||+||||||+| |++.+.+.++++.. ..+++.+.|+.+......+.+ |+.. +..
T Consensus 3 ~ivG~~nvGKStL~n~l~~~~~~~v~~~----------------~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~ 66 (429)
T TIGR03594 3 AIVGRPNVGKSTLFNRLTGKRDAIVSDT----------------PGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDK 66 (429)
T ss_pred EEECCCCCCHHHHHHHHhCCCcceecCC----------------CCcccCceEEEEEECCeEEEEEECCCCCCcchhHHH
Confidence 5799999997655 99998874433222 234555555554433323222 5532 334
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+..++.. ++.++|+|++|+|+++. .. ..+..+..+|++ ..+|+++|+||+|+...... ...
T Consensus 67 ~~~~~~~~--~~~~ad~vl~vvD~~~~--~~--~~d~~i~~~l~~---------~~~piilVvNK~D~~~~~~~---~~~ 128 (429)
T TIGR03594 67 QIREQAEI--AIEEADVILFVVDGREG--LT--PEDEEIAKWLRK---------SGKPVILVANKIDGKKEDAV---AAE 128 (429)
T ss_pred HHHHHHHH--HHhhCCEEEEEEeCCCC--CC--HHHHHHHHHHHH---------hCCCEEEEEECccCCccccc---HHH
Confidence 45555555 67889999999999873 22 234456677765 24689999999999865431 111
Q ss_pred HHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC----------ccEEEEeecCCChhhHHHhhhcccccee
Q 005972 357 WVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR----------GNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 357 wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~----------~~v~vvG~~NVGKSTLiN~L~~~~~~~~ 426 (666)
...+| +..++++||++|.|+++|++.+.+.++.. .+++++|.+|||||||+|+|++.....
T Consensus 129 -----~~~lg---~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~- 199 (429)
T TIGR03594 129 -----FYSLG---FGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI- 199 (429)
T ss_pred -----HHhcC---CCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeee-
Confidence 12455 55699999999999999999998876431 468999999999999999999865433
Q ss_pred ecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-hHHHHHhhhhcCceeEEecCCCcccccceEE
Q 005972 427 SKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-EQKMVEIRKELQPRTYRVKARQAVHVGGLMR 504 (666)
Q Consensus 427 ~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~~~~~~~~kel~~~~f~l~~~~~l~lggl~r 504 (666)
++..||||++.+......+ ..+.++||||+.........+..- ........+..+...++++..+.+....+..
T Consensus 200 ----~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~ 275 (429)
T TIGR03594 200 ----VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRI 275 (429)
T ss_pred ----cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH
Confidence 3689999999765543333 368999999998765433211000 0111234566788889998877666555544
Q ss_pred EeecccccceEEEEEecCCccccc
Q 005972 505 LDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 505 ld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
+..+.....++ +.+.||.++.
T Consensus 276 ~~~~~~~~~~i---iiv~NK~Dl~ 296 (429)
T TIGR03594 276 AGLILEAGKAL---VIVVNKWDLV 296 (429)
T ss_pred HHHHHHcCCcE---EEEEECcccC
Confidence 44443334454 3456777764
No 10
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.3e-23 Score=232.55 Aligned_cols=275 Identities=22% Similarity=0.198 Sum_probs=177.5
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh-----H
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD-----F 274 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d-----~ 274 (666)
..++||+||||||+| |++.+.+.+++... ..+++.+.|+.+......+. .|+.. +
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~----------------~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADT----------------PGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC----------------CCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 456799999997766 99988874433221 22345555544433222222 25543 3
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH
Q 005972 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+..+... +...+|+|++|+|+.+... ..+..+..+|++ ..+|+++|+||+|+..... .+
T Consensus 67 ~~~~~~~~~~--~~~~ad~il~vvd~~~~~~----~~~~~~~~~l~~---------~~~piilv~NK~D~~~~~~---~~ 128 (435)
T PRK00093 67 EKQIREQAEL--AIEEADVILFVVDGRAGLT----PADEEIAKILRK---------SNKPVILVVNKVDGPDEEA---DA 128 (435)
T ss_pred HHHHHHHHHH--HHHhCCEEEEEEECCCCCC----HHHHHHHHHHHH---------cCCcEEEEEECccCccchh---hH
Confidence 4445554444 6678999999999987421 223455666665 2468999999999754221 12
Q ss_pred HHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC---------CCccEEEEeecCCChhhHHHhhhccccce
Q 005972 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG---------PRGNVWVIGAQNAGKSTLINTFAKKEGVK 425 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~---------~~~~v~vvG~~NVGKSTLiN~L~~~~~~~ 425 (666)
..+ ..+| +..++++||++|.|+++|++.|....+ ...+|+++|.+|||||||+|+|++.....
T Consensus 129 ~~~-----~~lg---~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~ 200 (435)
T PRK00093 129 YEF-----YSLG---LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI 200 (435)
T ss_pred HHH-----HhcC---CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 222 2445 445899999999999999999976321 23689999999999999999999876544
Q ss_pred eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-hHHHHHhhhhcCceeEEecCCCcccccceE
Q 005972 426 VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-EQKMVEIRKELQPRTYRVKARQAVHVGGLM 503 (666)
Q Consensus 426 ~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~~~~~~~~kel~~~~f~l~~~~~l~lggl~ 503 (666)
+ +..||||++.+....... ..+.++||||+.........+..- ........+..+...++++..+.+...+..
T Consensus 201 ~-----~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~ 275 (435)
T PRK00093 201 V-----SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR 275 (435)
T ss_pred e-----cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH
Confidence 3 689999999876544333 368999999998766543211000 112223456678888999988766655554
Q ss_pred EEeecccccceEEEEEecCCccccc
Q 005972 504 RLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 504 rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.+..+.....++ +.+.|+.+..
T Consensus 276 i~~~~~~~~~~~---ivv~NK~Dl~ 297 (435)
T PRK00093 276 IAGLALEAGRAL---VIVVNKWDLV 297 (435)
T ss_pred HHHHHHHcCCcE---EEEEECccCC
Confidence 444444333454 3456777764
No 11
>PRK12289 GTPase RsgA; Reviewed
Probab=99.90 E-value=1.9e-23 Score=225.45 Aligned_cols=229 Identities=24% Similarity=0.314 Sum_probs=150.2
Q ss_pred Cceeecccccceecceeccccccccc--Cch-hHHHHH------HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHH
Q 005972 244 EVTVCARCHSLRNYGQVKNEVAENLI--PDF-DFDRVI------ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKS 314 (666)
Q Consensus 244 ~~~vCqRC~rLr~ygkv~~~~~~~~i--P~~-d~~~~L------~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~ 314 (666)
....|.+|.++++++........+.+ ++. +-...| .+.+.+| +++++|+|++|+|+.++.. .+..++++
T Consensus 35 ~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~-~~aNvD~vLlV~d~~~p~~-~~~~LdR~ 112 (352)
T PRK12289 35 SLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRP-PVANADQILLVFALAEPPL-DPWQLSRF 112 (352)
T ss_pred eEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceech-hhhcCCEEEEEEECCCCCC-CHHHHHHH
Confidence 35789999999987743221111111 110 000000 1123343 4689999999999987542 23334444
Q ss_pred HHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 315 LFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 315 I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+... .. ...|+|||+||+||++... +..|...+ +.+|+ .++++||+++.|+++|++.|..
T Consensus 113 L~~a-~~---------~~ip~ILVlNK~DLv~~~~----~~~~~~~~-~~~g~----~v~~iSA~tg~GI~eL~~~L~~- 172 (352)
T PRK12289 113 LVKA-ES---------TGLEIVLCLNKADLVSPTE----QQQWQDRL-QQWGY----QPLFISVETGIGLEALLEQLRN- 172 (352)
T ss_pred HHHH-HH---------CCCCEEEEEEchhcCChHH----HHHHHHHH-HhcCC----eEEEEEcCCCCCHHHHhhhhcc-
Confidence 4321 11 3458899999999985432 56675544 46674 3899999999999999999875
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEEeeEeCCceEEEECCCCCCCCcccccCCh
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNR 472 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~ 472 (666)
..++|+|.||||||||||+|++.....++.++.....| ||++...+. ++.+..|+|||||..+... +++
T Consensus 173 ----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l~~g~~liDTPG~~~~~l~---~~~ 243 (352)
T PRK12289 173 ----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--LPNGGLLADTPGFNQPDLD---CSP 243 (352)
T ss_pred ----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--CCCCcEEEeCCCccccccc---cCH
Confidence 25899999999999999999987766654322222223 999987665 5666799999999988872 233
Q ss_pred hhHHHHHhhhhcCcee--EEecCCCccccc--ceEEE
Q 005972 473 DEQKMVEIRKELQPRT--YRVKARQAVHVG--GLMRL 505 (666)
Q Consensus 473 ~~~~~~~~~kel~~~~--f~l~~~~~l~lg--gl~rl 505 (666)
++ +...+++++... -.|++.+|.|.. |++..
T Consensus 244 ~~--l~~~F~e~~~~~~~~~CrF~dC~H~~EPgCaV~ 278 (352)
T PRK12289 244 RE--LAHYFPEARQRLAQGNCQFNDCLHRDEPNCAVR 278 (352)
T ss_pred HH--HHhhHHHHHHhHhhCceEccCCccCCCCChhhh
Confidence 32 344555655532 478999999987 55444
No 12
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=4.8e-23 Score=241.36 Aligned_cols=274 Identities=19% Similarity=0.124 Sum_probs=174.6
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh-----
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d----- 273 (666)
...++||+||||||+| |++.+.+.++++..+ ..++.+.++........+. .|++.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p----------------GvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~ 339 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTP----------------GVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG 339 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCC----------------CeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc
Confidence 3457899999996655 999988754443322 2244444444432222222 25543
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+.+++.. ++..+|+||+|+|+++.. . ..+..+...|+. .++|+|+|+||+|+..... .
T Consensus 340 ~~~~~~~~~~~--~~~~aD~iL~VvDa~~~~--~--~~d~~i~~~Lr~---------~~~pvIlV~NK~D~~~~~~---~ 401 (712)
T PRK09518 340 IDSAIASQAQI--AVSLADAVVFVVDGQVGL--T--STDERIVRMLRR---------AGKPVVLAVNKIDDQASEY---D 401 (712)
T ss_pred HHHHHHHHHHH--HHHhCCEEEEEEECCCCC--C--HHHHHHHHHHHh---------cCCCEEEEEECcccccchh---h
Confidence 34445555554 678899999999998732 2 234456666654 3568999999999864321 1
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC------------CccEEEEeecCCChhhHHHhhhcc
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP------------RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~------------~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
...+ ..+| +..++++||++|.|+++|++.|.+.++. ..+|+++|.+|||||||+|+|++.
T Consensus 402 ~~~~-----~~lg---~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 402 AAEF-----WKLG---LGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred HHHH-----HHcC---CCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 1111 1345 3458899999999999999998776543 157999999999999999999986
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH---HHhhhhcCceeEEecCCCcc
Q 005972 422 EGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM---VEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 422 ~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~---~~~~kel~~~~f~l~~~~~l 497 (666)
.... ++..||||++.+.....++ ..+.++||||+........ ..+.... ....+..+.+.++++.....
T Consensus 474 ~~~~-----v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~--~~e~~~~~r~~~~i~~advvilViDat~~~ 546 (712)
T PRK09518 474 ERAV-----VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT--GAEYYSSLRTQAAIERSELALFLFDASQPI 546 (712)
T ss_pred cccc-----cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch--hHHHHHHHHHHHHhhcCCEEEEEEECCCCC
Confidence 5432 3589999999765443333 3678999999975443211 1111111 12245677888888887766
Q ss_pred cccceEEEeecccccceEEEEEecCCccccc
Q 005972 498 HVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 498 ~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
....+..+..+.....++ +.+.||+++.
T Consensus 547 s~~~~~i~~~~~~~~~pi---IiV~NK~DL~ 574 (712)
T PRK09518 547 SEQDLKVMSMAVDAGRAL---VLVFNKWDLM 574 (712)
T ss_pred CHHHHHHHHHHHHcCCCE---EEEEEchhcC
Confidence 655554444443333454 3456777764
No 13
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.88 E-value=2.6e-22 Score=192.18 Aligned_cols=142 Identities=32% Similarity=0.407 Sum_probs=107.7
Q ss_pred CEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcc
Q 005972 292 GVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLN 371 (666)
Q Consensus 292 DvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~ 371 (666)
|+|++|+|++++.++....+.+ ..+.. .++|+|+|+||+||+++.. +..|+.++.+..+ .
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~---~~~~~---------~~~p~IiVlNK~Dl~~~~~----~~~~~~~~~~~~~----~ 60 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER---VLIKE---------KGKKLILVLNKADLVPKEV----LRKWLAYLRHSYP----T 60 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH---HHHhc---------CCCCEEEEEechhcCCHHH----HHHHHHHHHhhCC----c
Confidence 7899999999987665432221 12221 3468999999999986532 5677655543322 3
Q ss_pred eEEEEecccCcChhhHHHHHHhh-------------cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCce
Q 005972 372 GVYLVSARKDLGVRNLLAFIKEL-------------AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTT 438 (666)
Q Consensus 372 ~V~~VSAkkg~GveeLl~~I~~~-------------l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT 438 (666)
.++++||+++.|+++|++.|.+. .+...+++++|.||||||||+|+|++..... ++..||||
T Consensus 61 ~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~-----~~~~~~~t 135 (155)
T cd01849 61 IPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLK-----VGNVPGTT 135 (155)
T ss_pred eEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccccc-----ccCCCCcc
Confidence 58999999999999999988542 2345689999999999999999999876554 36889999
Q ss_pred eEEEEEeeEeCCceEEEECCCC
Q 005972 439 LGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 439 ~~~~~~~~~l~~~~~liDTPGi 460 (666)
++...+. ++.++.++||||+
T Consensus 136 ~~~~~~~--~~~~~~liDtPG~ 155 (155)
T cd01849 136 TSQQEVK--LDNKIKLLDTPGI 155 (155)
T ss_pred cceEEEE--ecCCEEEEECCCC
Confidence 9987765 5678999999997
No 14
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.88 E-value=5.6e-22 Score=207.79 Aligned_cols=154 Identities=27% Similarity=0.311 Sum_probs=117.5
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHH
Q 005972 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+++.+ +++++|+|++|+|++++.++....+ .+.+ ..+|+|+|+||+||+++.. +..|++
T Consensus 13 ~~~~~--~l~~aDvVl~V~Dar~p~~~~~~~i----~~~l-----------~~kp~IiVlNK~DL~~~~~----~~~~~~ 71 (276)
T TIGR03596 13 REIKE--KLKLVDVVIEVLDARIPLSSRNPMI----DEIR-----------GNKPRLIVLNKADLADPAV----TKQWLK 71 (276)
T ss_pred HHHHH--HHhhCCEEEEEEeCCCCCCCCChhH----HHHH-----------CCCCEEEEEEccccCCHHH----HHHHHH
Confidence 34455 6788999999999999877654332 2222 2358999999999976432 567766
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC-------------CccEEEEeecCCChhhHHHhhhcccccee
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP-------------RGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~-------------~~~v~vvG~~NVGKSTLiN~L~~~~~~~~ 426 (666)
++. ..+. .++++||+++.|+++|++.|.++++. ..++++||+||||||||||+|++.....
T Consensus 72 ~~~-~~~~----~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~- 145 (276)
T TIGR03596 72 YFE-EKGI----KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAK- 145 (276)
T ss_pred HHH-HcCC----eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccc-
Confidence 553 3342 48999999999999999988776542 2469999999999999999999765443
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcc
Q 005972 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 427 ~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~ 466 (666)
+++.||||+....+. +..++.|+||||+..|...
T Consensus 146 ----~~~~~g~T~~~~~~~--~~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 146 ----VGNRPGVTKGQQWIK--LSDGLELLDTPGILWPKFE 179 (276)
T ss_pred ----cCCCCCeecceEEEE--eCCCEEEEECCCcccCCCC
Confidence 468999999987665 5668999999999988653
No 15
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.87 E-value=9.2e-22 Score=202.88 Aligned_cols=193 Identities=20% Similarity=0.195 Sum_probs=139.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..+++|.+++|+|+.++..++. .+++++. .+.. .+.|+++|+||+||.+... ....|++.+ ++.|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~-~l~r~l~-~~~~---------~~i~~vIV~NK~DL~~~~~---~~~~~~~~~-~~~g 97 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLN-QLDRFLV-VAEA---------QNIEPIIVLNKIDLLDDED---MEKEQLDIY-RNIG 97 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHH-HHHHHHH-HHHH---------CCCCEEEEEECcccCCCHH---HHHHHHHHH-HHCC
Confidence 4678999999999998765532 3343332 2221 3467899999999976432 123455444 3466
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~ 444 (666)
+ .++.+||++|.|+++|.+.|.+ ..++++|.||||||||||+|++.....++.++.+...| ||++...+
T Consensus 98 ~----~v~~~SAktg~gi~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~ 168 (245)
T TIGR00157 98 Y----QVLMTSSKNQDGLKELIEALQN-----RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF 168 (245)
T ss_pred C----eEEEEecCCchhHHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE
Confidence 4 3899999999999999998874 47889999999999999999998777766554433434 99998777
Q ss_pred eeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc--ceEEEeeccc
Q 005972 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG--GLMRLDLDQA 510 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg--gl~rld~l~~ 510 (666)
. + .+..|+||||+....+.. ++++ .+...++++....-.|++.+|.|.. |++..+.++.
T Consensus 169 ~--l-~~~~liDtPG~~~~~l~~--~~~~--~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~ 229 (245)
T TIGR00157 169 H--F-HGGLIADTPGFNEFGLWH--LEPE--QLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQ 229 (245)
T ss_pred E--c-CCcEEEeCCCccccCCCC--CCHH--HHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHc
Confidence 6 4 467999999999888754 3322 2445666776666679999999997 6666555543
No 16
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.86 E-value=3.2e-21 Score=203.13 Aligned_cols=153 Identities=29% Similarity=0.328 Sum_probs=116.5
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHH
Q 005972 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+++.+ +++.+|+|++|+|++++.++.... +.+.+ ..+|+++|+||+||++.. .+..|++
T Consensus 16 ~~l~~--~l~~aDvIL~VvDar~p~~~~~~~----l~~~~-----------~~kp~iiVlNK~DL~~~~----~~~~~~~ 74 (287)
T PRK09563 16 REIKE--NLKLVDVVIEVLDARIPLSSENPM----IDKII-----------GNKPRLLILNKSDLADPE----VTKKWIE 74 (287)
T ss_pred HHHHH--HhhhCCEEEEEEECCCCCCCCChh----HHHHh-----------CCCCEEEEEEchhcCCHH----HHHHHHH
Confidence 34455 678899999999999987665432 22221 235799999999997542 2567766
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC-------------CCccEEEEeecCCChhhHHHhhhcccccee
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-------------PRGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~-------------~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~ 426 (666)
++. ..+. .++++||+++.|+++|++.|.+.++ ...+++++|.||||||||||+|+++....
T Consensus 75 ~~~-~~~~----~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~- 148 (287)
T PRK09563 75 YFE-EQGI----KALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAK- 148 (287)
T ss_pred HHH-HcCC----eEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccc-
Confidence 553 3342 3899999999999999998876543 23479999999999999999999876443
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCc
Q 005972 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 427 ~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
+++.||+|++...+. ++.++.++||||+..|..
T Consensus 149 ----~~~~~g~T~~~~~~~--~~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 149 ----TGNRPGVTKAQQWIK--LGKGLELLDTPGILWPKL 181 (287)
T ss_pred ----cCCCCCeEEEEEEEE--eCCcEEEEECCCcCCCCC
Confidence 468999999987665 567899999999998774
No 17
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.86 E-value=8.3e-22 Score=192.95 Aligned_cols=147 Identities=28% Similarity=0.421 Sum_probs=106.7
Q ss_pred CEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCC--
Q 005972 292 GVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPK-- 369 (666)
Q Consensus 292 DvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~-- 369 (666)
|+|++|+|++++.++....+.+.+. +.. .++|+|+|+||+||+++.. +..|++++.+....-.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~--l~~---------~~kp~IlVlNK~DL~~~~~----l~~~~~~~~~~~~~~~~~ 65 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL--QAG---------GNKKLVLVLNKIDLVPKEN----VEKWLKYLRREFPTVAFK 65 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH--hcc---------CCCCEEEEEehhhcCCHHH----HHHHHHHHHhhCCEEEEE
Confidence 7999999999988776544333220 221 3468999999999987544 7888887765432100
Q ss_pred ------------------cceEEEEecccCcChhhHHHHHHhhcCC-----CccEEEEeecCCChhhHHHhhhcccccee
Q 005972 370 ------------------LNGVYLVSARKDLGVRNLLAFIKELAGP-----RGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 370 ------------------~~~V~~VSAkkg~GveeLl~~I~~~l~~-----~~~v~vvG~~NVGKSTLiN~L~~~~~~~~ 426 (666)
.....++|+.++.|.+.|++.+.++... ..+++++|.||||||||||+|++.....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 66 ASTQSQKKNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred ecccccccchhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 0112345666677788888888765432 25899999999999999999998765444
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005972 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 427 ~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
++.||||++...+. ++.++.++||||+
T Consensus 146 -----~~~pg~T~~~~~~~--~~~~~~l~DtPGi 172 (172)
T cd04178 146 -----GATPGVTKSMQEVH--LDKKVKLLDSPGI 172 (172)
T ss_pred -----cCCCCeEcceEEEE--eCCCEEEEECcCC
Confidence 68999999987765 5678999999997
No 18
>PRK12288 GTPase RsgA; Reviewed
Probab=99.86 E-value=4.9e-21 Score=206.54 Aligned_cols=195 Identities=21% Similarity=0.202 Sum_probs=141.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..+++|.+++|.+.. ++.+ +..+++++.. ... ...|+++|+||+||++... ...+..|++.+ +..|
T Consensus 117 iaANvD~vlIV~s~~-p~~s-~~~Ldr~L~~-a~~---------~~i~~VIVlNK~DL~~~~~-~~~~~~~~~~y-~~~g 182 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELS-LNIIDRYLVA-CET---------LGIEPLIVLNKIDLLDDEG-RAFVNEQLDIY-RNIG 182 (347)
T ss_pred EEEEccEEEEEEeCC-CCCC-HHHHHHHHHH-HHh---------cCCCEEEEEECccCCCcHH-HHHHHHHHHHH-HhCC
Confidence 357899988888754 4433 2344554432 221 2357899999999986532 12345555443 4566
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~ 444 (666)
+ .++.+||+++.|+++|.+.|.. ..++|+|.||||||||||+|++.....++.++.+...| ||+....+
T Consensus 183 ~----~v~~vSA~tg~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~ 253 (347)
T PRK12288 183 Y----RVLMVSSHTGEGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLY 253 (347)
T ss_pred C----eEEEEeCCCCcCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEE
Confidence 4 3999999999999999999975 36899999999999999999998888777665555555 88887666
Q ss_pred eeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc--ceEEEeeccc
Q 005972 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG--GLMRLDLDQA 510 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg--gl~rld~l~~ 510 (666)
. ++.+..|+|||||....+.. ++.+ .+...++++.+..-.|++.+|.|.. |++..+.++.
T Consensus 254 ~--l~~~~~liDTPGir~~~l~~--~~~~--~l~~~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~ 315 (347)
T PRK12288 254 H--FPHGGDLIDSPGVREFGLWH--LEPE--QVTQGFVEFRDYLGTCKFRDCKHDDDPGCALREAVEE 315 (347)
T ss_pred E--ecCCCEEEECCCCCcccCCC--CCHH--HHHHhhHHHHHHhcCCCCCCCccCCCCCChHHHHHHc
Confidence 5 56677899999999888753 2322 3456677777777789999999997 7777777654
No 19
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=201.13 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=129.9
Q ss_pred CceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cch-----
Q 005972 202 GFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDF----- 272 (666)
Q Consensus 202 G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~----- 272 (666)
||++. ||||||||| +||++.|+|+||+++|+|| ||.+..|+++....|+++ |++
T Consensus 7 GfVaI-iGrPNvGKSTLlN~l~G~KisIvS~k~QT----------------TR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAI-IGRPNVGKSTLLNALVGQKISIVSPKPQT----------------TRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEE-EcCCCCcHHHHHHHHhcCceEeecCCcch----------------hhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 77776 999999955 5599999999999999999 999999999988888775 544
Q ss_pred hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 273 DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 273 d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
.+.+.|++.+.+ ++.++|+|+||||+.+..+. .++.+++.|++ .+.|+++++||+|+++....
T Consensus 70 ~l~~~m~~~a~~--sl~dvDlilfvvd~~~~~~~----~d~~il~~lk~---------~~~pvil~iNKID~~~~~~~-- 132 (298)
T COG1159 70 ALGELMNKAARS--ALKDVDLILFVVDADEGWGP----GDEFILEQLKK---------TKTPVILVVNKIDKVKPKTV-- 132 (298)
T ss_pred HHHHHHHHHHHH--HhccCcEEEEEEeccccCCc----cHHHHHHHHhh---------cCCCeEEEEEccccCCcHHH--
Confidence 477899999999 99999999999999985443 35667776664 23589999999999976542
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
+...++.+...+. |..++++||++|.|++.|++.|..++|++
T Consensus 133 -l~~~~~~~~~~~~---f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 133 -LLKLIAFLKKLLP---FKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred -HHHHHHHHHhhCC---cceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 3444444444444 77899999999999999999999999876
No 20
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.85 E-value=8.2e-21 Score=179.16 Aligned_cols=134 Identities=30% Similarity=0.379 Sum_probs=101.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++.++|+|++|+|++++...... .+.+++... . .++|+++|+||+||+++.. +..|.+++. ..+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~----~l~~~l~~~------~-~~k~~iivlNK~DL~~~~~----~~~~~~~~~-~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP----DLERYVKEV------D-PRKKNILLLNKADLLTEEQ----RKAWAEYFK-KEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH----HHHHHHHhc------c-CCCcEEEEEechhcCCHHH----HHHHHHHHH-hcC
Confidence 67889999999999998765433 333444331 0 2468999999999976432 456655443 444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG 446 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~ 446 (666)
. .++++||+++.+ +++++|.+|||||||||+|++.... .++..||+|++...+.
T Consensus 72 ~----~ii~iSa~~~~~----------------~~~~~G~~~vGKstlin~l~~~~~~-----~~~~~~~~~~~~~~~~- 125 (141)
T cd01857 72 I----VVVFFSALKENA----------------TIGLVGYPNVGKSSLINALVGKKKV-----SVSATPGKTKHFQTIF- 125 (141)
T ss_pred C----eEEEEEecCCCc----------------EEEEECCCCCCHHHHHHHHhCCCce-----eeCCCCCcccceEEEE-
Confidence 3 489999999875 6999999999999999999986543 3568899999977665
Q ss_pred EeCCceEEEECCCCCCC
Q 005972 447 ILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 447 ~l~~~~~liDTPGi~~~ 463 (666)
++.+..|+||||+..|
T Consensus 126 -~~~~~~i~DtpG~~~p 141 (141)
T cd01857 126 -LTPTITLCDCPGLVFP 141 (141)
T ss_pred -eCCCEEEEECCCcCCC
Confidence 5668899999999865
No 21
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.85 E-value=5.1e-21 Score=203.41 Aligned_cols=158 Identities=26% Similarity=0.454 Sum_probs=126.1
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHH
Q 005972 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+.+.+ .++.+||||.|+|||||.|+...+.++.++. +++++++|||+||+||+|++. +..|+.
T Consensus 138 ke~rk--vve~sDVVleVlDARDPlgtR~~~vE~~V~~-----------~~gnKkLILVLNK~DLVPrEv----~e~Wl~ 200 (435)
T KOG2484|consen 138 KEFRK--VVEASDVVLEVLDARDPLGTRCPEVEEAVLQ-----------AHGNKKLILVLNKIDLVPREV----VEKWLV 200 (435)
T ss_pred HHHHH--HHhhhheEEEeeeccCCCCCCChhHHHHHHh-----------ccCCceEEEEeehhccCCHHH----HHHHHH
Confidence 34455 6678999999999999999999887776643 124478999999999999987 899999
Q ss_pred HHHHhCCCCCcceEEEEeccc-------------CcChhhHHHHHHhhcC-----CCccEEEEeecCCChhhHHHhhhcc
Q 005972 360 HRAKAGGAPKLNGVYLVSARK-------------DLGVRNLLAFIKELAG-----PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkk-------------g~GveeLl~~I~~~l~-----~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
|+.+++.. |.+.++.. ..|.+.|+..+.++.. ...+|+|||+|||||||+||+|..+
T Consensus 201 YLr~~~pt-----v~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~ 275 (435)
T KOG2484|consen 201 YLRREGPT-----VAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRR 275 (435)
T ss_pred HHHhhCCc-----ceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHh
Confidence 98876542 44443332 2466778888876643 3478999999999999999999998
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcc
Q 005972 422 EGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 422 ~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~ 466 (666)
..+.++ +.||.|+.+..+. ++.++.|+|.||+..+...
T Consensus 276 k~C~vg-----~~pGvT~smqeV~--Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 276 KACNVG-----NVPGVTRSMQEVK--LDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred ccccCC-----CCccchhhhhhee--ccCCceeccCCceeecCCC
Confidence 887664 8999999998876 7889999999999977664
No 22
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.85 E-value=2.2e-20 Score=181.78 Aligned_cols=144 Identities=31% Similarity=0.336 Sum_probs=108.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++|+|++++...... .+...+ ..+|+++|+||+||++... +..|++++. ..+
T Consensus 16 ~i~~aD~il~v~D~~~~~~~~~~----~i~~~~-----------~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~-~~~ 75 (171)
T cd01856 16 KLKLVDLVIEVRDARIPLSSRNP----LLEKIL-----------GNKPRIIVLNKADLADPKK----TKKWLKYFE-SKG 75 (171)
T ss_pred HHhhCCEEEEEeeccCccCcCCh----hhHhHh-----------cCCCEEEEEehhhcCChHH----HHHHHHHHH-hcC
Confidence 67899999999999987654322 122322 2357899999999975422 455654432 222
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc------------CCCccEEEEeecCCChhhHHHhhhccccceeecccccCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA------------GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPI 434 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l------------~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~ 434 (666)
..++++||+++.|+++|++.|.+.+ +....++++|.+|||||||+|+|++.... +++..
T Consensus 76 ----~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~-----~~~~~ 146 (171)
T cd01856 76 ----EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVA-----KVGNK 146 (171)
T ss_pred ----CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCce-----eecCC
Confidence 3489999999999999999998864 23357899999999999999999986543 34689
Q ss_pred CCceeEEEEEeeEeCCceEEEECCCCC
Q 005972 435 PGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 435 PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
||||++...+. ++.++.++||||+.
T Consensus 147 ~~~T~~~~~~~--~~~~~~~iDtpG~~ 171 (171)
T cd01856 147 PGVTKGIQWIK--ISPGIYLLDTPGIL 171 (171)
T ss_pred CCEEeeeEEEE--ecCCEEEEECCCCC
Confidence 99999987765 44678999999984
No 23
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=3.8e-20 Score=193.36 Aligned_cols=190 Identities=26% Similarity=0.327 Sum_probs=142.1
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH
Q 005972 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH 360 (666)
Q Consensus 281 ~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~ 360 (666)
.+.+| ...++|-+++|+.+.+|+.+. ..+++++... +.. +..| ++|+||+||++...... +.+ ..
T Consensus 71 ~L~Rp-~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~a--------e~~-gi~p-vIvlnK~DL~~~~~~~~--~~~-~~ 135 (301)
T COG1162 71 VLIRP-PVANNDQAIIVVSLVDPDFNT-NLLDRYLVLA--------EAG-GIEP-VIVLNKIDLLDDEEAAV--KEL-LR 135 (301)
T ss_pred ceeCC-cccccceEEEEEeccCCCCCH-HHHHHHHHHH--------HHc-CCcE-EEEEEccccCcchHHHH--HHH-HH
Confidence 44555 345688889999999987553 3445554331 111 3344 77899999998765221 222 23
Q ss_pred HHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ce
Q 005972 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TT 438 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT 438 (666)
.++.+|++ ++.+|++++.|+++|...+.. ....++|.+|||||||||+|.+....+++.++.....| ||
T Consensus 136 ~y~~~gy~----v~~~s~~~~~~~~~l~~~l~~-----~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTT 206 (301)
T COG1162 136 EYEDIGYP----VLFVSAKNGDGLEELAELLAG-----KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTT 206 (301)
T ss_pred HHHhCCee----EEEecCcCcccHHHHHHHhcC-----CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCcc
Confidence 44678875 999999999999999998874 47889999999999999999998888888888777777 88
Q ss_pred eEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc
Q 005972 439 LGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG 500 (666)
Q Consensus 439 ~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg 500 (666)
++...+. ++.+++|+|||||......+ +.+++ +...+.++....-.|++..|.|.+
T Consensus 207 t~~~l~~--l~~gG~iiDTPGf~~~~l~~--~~~e~--l~~~F~ef~~~~~~CkFr~C~H~~ 262 (301)
T COG1162 207 THVELFP--LPGGGWIIDTPGFRSLGLAH--LEPED--LVQAFPEFAELARQCKFRDCTHTH 262 (301)
T ss_pred ceEEEEE--cCCCCEEEeCCCCCccCccc--CCHHH--HHHHhHHHHHHhcCCCCCCCCCCC
Confidence 8887766 77889999999999888732 44443 445677777766689999999987
No 24
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.83 E-value=7.4e-20 Score=174.76 Aligned_cols=144 Identities=35% Similarity=0.495 Sum_probs=105.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|+|++|+|++++...... .+...+.. ..+|+++|+||+|+++... ...|. .+.+..+.
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~----~l~~~~~~---------~~~p~iiv~NK~Dl~~~~~----~~~~~-~~~~~~~~ 71 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSR----KLERYVLE---------LGKKLLIVLNKADLVPKEV----LEKWK-SIKESEGI 71 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCH----HHHHHHHh---------CCCcEEEEEEhHHhCCHHH----HHHHH-HHHHhCCC
Confidence 4569999999999986544332 23232222 2468999999999975322 34443 22233332
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCC---CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEE
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGP---RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRI 444 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~---~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~ 444 (666)
.++++||+++.|+++|++.|.++++. ..+++++|.+|||||||+|+|.+.... .+++.+|+|++...+
T Consensus 72 ----~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-----~~~~~~~~t~~~~~~ 142 (156)
T cd01859 72 ----PVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSA-----STSPSPGYTKGEQLV 142 (156)
T ss_pred ----cEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCcc-----ccCCCCCeeeeeEEE
Confidence 38999999999999999999987654 457899999999999999999965433 346889999886544
Q ss_pred eeEeCCceEEEECCCC
Q 005972 445 GGILPAKAKLYDTPGL 460 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi 460 (666)
. ++.++.++||||+
T Consensus 143 ~--~~~~~~~~DtpGi 156 (156)
T cd01859 143 K--ITSKIYLLDTPGV 156 (156)
T ss_pred E--cCCCEEEEECcCC
Confidence 3 4567899999997
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.82 E-value=6.4e-20 Score=193.37 Aligned_cols=193 Identities=26% Similarity=0.247 Sum_probs=135.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|++++|+|+.++..+ +..+++++. .+.. .+.|+++|+||+||.+... ...|... +...|
T Consensus 75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~-~~~~---------~~ip~iIVlNK~DL~~~~~----~~~~~~~-~~~~g 138 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLV-AAEA---------AGIEPVIVLTKADLLDDEE----EELELVE-ALALG 138 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-HHHHHHHHH-HHHH---------cCCCEEEEEEHHHCCChHH----HHHHHHH-HHhCC
Confidence 46889999999999886522 234444332 2222 3457899999999986521 2334332 23456
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccc--cCCCCceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTE--APIPGTTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~--S~~PGTT~~~~~~ 444 (666)
+ .++++||+++.|+++|...|.. ..++++|.+|||||||||+|++.....++.++. +..++||++...+
T Consensus 139 ~----~v~~vSA~~g~gi~~L~~~L~~-----k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~ 209 (287)
T cd01854 139 Y----PVLAVSAKTGEGLDELREYLKG-----KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF 209 (287)
T ss_pred C----eEEEEECCCCccHHHHHhhhcc-----ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE
Confidence 4 3899999999999999998874 479999999999999999999877665554432 2344589887766
Q ss_pred eeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc--ceEEEeeccc
Q 005972 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG--GLMRLDLDQA 510 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg--gl~rld~l~~ 510 (666)
. ++....++||||+....... ++.+ .+...++++....-.|++.+|.|.. |++..+.++.
T Consensus 210 ~--~~~~~~liDtPG~~~~~~~~--~~~~--~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~ 271 (287)
T cd01854 210 P--LPGGGLLIDTPGFREFGLLH--IDPE--ELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEA 271 (287)
T ss_pred E--cCCCCEEEECCCCCccCCcc--CCHH--HHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHc
Confidence 5 55567999999998776432 3333 3455666676666679999999987 6666666553
No 26
>PRK00098 GTPase RsgA; Reviewed
Probab=99.81 E-value=2.6e-19 Score=189.74 Aligned_cols=194 Identities=26% Similarity=0.262 Sum_probs=133.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|++++|+|+.++... ...+++.+.. +.. .+.|+++|+||+||.+.. .....|.+.+ +..|
T Consensus 77 iaaniD~vllV~d~~~p~~~-~~~idr~L~~-~~~---------~~ip~iIVlNK~DL~~~~---~~~~~~~~~~-~~~g 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFS-TDLLDRFLVL-AEA---------NGIKPIIVLNKIDLLDDL---EEARELLALY-RAIG 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCC-HHHHHHHHHH-HHH---------CCCCEEEEEEhHHcCCCH---HHHHHHHHHH-HHCC
Confidence 45789999999999876432 2222333322 222 345789999999997332 2344554433 4556
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~ 444 (666)
+ .++++||+++.|+++|++.|. +..++++|.+|||||||||+|++.....++.++....-| ||++...+
T Consensus 142 ~----~v~~vSA~~g~gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~ 212 (298)
T PRK00098 142 Y----DVLELSAKEGEGLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY 212 (298)
T ss_pred C----eEEEEeCCCCccHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE
Confidence 4 389999999999999998885 347889999999999999999987766555444333344 88876665
Q ss_pred eeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc--ceEEEeeccc
Q 005972 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG--GLMRLDLDQA 510 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg--gl~rld~l~~ 510 (666)
. ++..+.|+||||+....... ++.++ +...++++.+..-.|++..|.|.+ |.+..+.++.
T Consensus 213 ~--~~~~~~~~DtpG~~~~~~~~--~~~~~--~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~ 274 (298)
T PRK00098 213 D--LPGGGLLIDTPGFSSFGLHD--LEAEE--LEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEE 274 (298)
T ss_pred E--cCCCcEEEECCCcCccCCCC--CCHHH--HHHHHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHc
Confidence 4 55678999999999766542 33332 334555555555568889999987 5555555543
No 27
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=190.69 Aligned_cols=162 Identities=35% Similarity=0.456 Sum_probs=128.2
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+.|...+.+ ++...|+||.|+|||||.|+....++++ |++. +..+.+|+|+||+||+|.+. ..
T Consensus 201 kRIW~ELyK--ViDSSDVvvqVlDARDPmGTrc~~ve~y----lkke-------~phKHli~vLNKvDLVPtwv----t~ 263 (572)
T KOG2423|consen 201 KRIWGELYK--VIDSSDVVVQVLDARDPMGTRCKHVEEY----LKKE-------KPHKHLIYVLNKVDLVPTWV----TA 263 (572)
T ss_pred hHHHHHHHH--hhcccceeEEeeeccCCcccccHHHHHH----Hhhc-------CCcceeEEEeeccccccHHH----HH
Confidence 355666677 7888999999999999999998665544 4432 13457999999999999987 68
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC-----CCccEEEEeecCCChhhHHHhhhccccceeeccc
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-----PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT 430 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~-----~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t 430 (666)
.|++.+.+.... + -|..|..+..|-..|++.|+++.. ..+.|++||+|||||||+||+|..+..+++
T Consensus 264 ~Wv~~lSkeyPT--i--AfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv---- 335 (572)
T KOG2423|consen 264 KWVRHLSKEYPT--I--AFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV---- 335 (572)
T ss_pred HHHHHHhhhCcc--e--eeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccc----
Confidence 999998876542 1 345577777898889988887643 346789999999999999999999998877
Q ss_pred ccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCc
Q 005972 431 EAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 431 ~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
.++||-|.-.+.+. |-..++|||.||++.|..
T Consensus 336 -APIpGETKVWQYIt--LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 336 -APIPGETKVWQYIT--LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred -cCCCCcchHHHHHH--HHhceeEecCCCccCCCC
Confidence 49999997655443 446889999999998875
No 28
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=189.06 Aligned_cols=168 Identities=26% Similarity=0.264 Sum_probs=122.5
Q ss_pred chhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC
Q 005972 271 DFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS 350 (666)
Q Consensus 271 ~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~ 350 (666)
.|+.+--+.+++++ +++..|+||.|||||+|.-.++.+++.++.+.. ..+..+|++||+||+++..
T Consensus 157 pFErNLE~WRQLWR--VlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----------~~K~~~LLvNKaDLl~~~q- 222 (562)
T KOG1424|consen 157 PFERNLEIWRQLWR--VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----------PSKANVLLVNKADLLPPEQ- 222 (562)
T ss_pred hhhhCHHHHHHHHH--HHhhcceEEEEeecCCccccCChhHHHHHhccc-----------cccceEEEEehhhcCCHHH-
Confidence 34444456788999 999999999999999998888887776664432 2245799999999998865
Q ss_pred hHHHHHHHHHHHHhCCCCCcceEEEEeccc------C----------cChhh------------HHHHHH----------
Q 005972 351 PTRLDRWVRHRAKAGGAPKLNGVYLVSARK------D----------LGVRN------------LLAFIK---------- 392 (666)
Q Consensus 351 ~~~L~~wl~~~~k~~g~~~~~~V~~VSAkk------g----------~Gvee------------Ll~~I~---------- 392 (666)
...|..++..+ +++ +++.||.. + .|+.. ++...+
T Consensus 223 ---r~aWa~YF~~~-ni~----~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~ 294 (562)
T KOG1424|consen 223 ---RVAWAEYFRQN-NIP----VVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVE 294 (562)
T ss_pred ---HHHHHHHHHhc-Cce----EEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHH
Confidence 68897766543 343 77778765 0 11110 110000
Q ss_pred h---------h-----cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECC
Q 005972 393 E---------L-----AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTP 458 (666)
Q Consensus 393 ~---------~-----l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTP 458 (666)
+ . .....+|++||+|||||||+||+|++.+.+ +||..||-|++++.+. +...+.|.|.|
T Consensus 295 ~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkV-----sVS~TPGkTKHFQTi~--ls~~v~LCDCP 367 (562)
T KOG1424|consen 295 QLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKV-----SVSSTPGKTKHFQTIF--LSPSVCLCDCP 367 (562)
T ss_pred hhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCcee-----eeecCCCCcceeEEEE--cCCCceecCCC
Confidence 0 0 011267899999999999999999998754 4579999999998875 78899999999
Q ss_pred CCCCCCccc
Q 005972 459 GLLHPHLMS 467 (666)
Q Consensus 459 Gi~~~~~~~ 467 (666)
|++.|+...
T Consensus 368 GLVfPSf~~ 376 (562)
T KOG1424|consen 368 GLVFPSFSP 376 (562)
T ss_pred CccccCCCc
Confidence 999998754
No 29
>PRK01889 GTPase RsgA; Reviewed
Probab=99.68 E-value=4.6e-16 Score=168.86 Aligned_cols=189 Identities=27% Similarity=0.233 Sum_probs=122.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
++++|.|++|+++. ++. .+..+++.+.. ... .+.+.+||+||+||++... . ...|+..+ ..|+
T Consensus 110 aANvD~vliV~s~~-p~~-~~~~ldr~L~~-a~~---------~~i~piIVLNK~DL~~~~~--~-~~~~~~~~--~~g~ 172 (356)
T PRK01889 110 AANVDTVFIVCSLN-HDF-NLRRIERYLAL-AWE---------SGAEPVIVLTKADLCEDAE--E-KIAEVEAL--APGV 172 (356)
T ss_pred EEeCCEEEEEEecC-CCC-ChhHHHHHHHH-HHH---------cCCCEEEEEEChhcCCCHH--H-HHHHHHHh--CCCC
Confidence 58999999999995 322 23344444432 222 2235688999999986521 1 22333322 3343
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEEe
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRIG 445 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~~ 445 (666)
.|+++|++++.|+++|...|.. +..++++|.+|||||||+|.|++.....++.+......| ||+....+
T Consensus 173 ----~Vi~vSa~~g~gl~~L~~~L~~----g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~- 243 (356)
T PRK01889 173 ----PVLAVSALDGEGLDVLAAWLSG----GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH- 243 (356)
T ss_pred ----cEEEEECCCCccHHHHHHHhhc----CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEE-
Confidence 3999999999999999998853 458999999999999999999987665555444333334 55543222
Q ss_pred eEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc--ceEEEeec
Q 005972 446 GILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG--GLMRLDLD 508 (666)
Q Consensus 446 ~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg--gl~rld~l 508 (666)
.++.+..++||||+..+..... ...+...++++....-.|++..|.|.. |.+..+.+
T Consensus 244 -~l~~~~~l~DtpG~~~~~l~~~-----~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~ 302 (356)
T PRK01889 244 -PLPSGGLLIDTPGMRELQLWDA-----EDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAI 302 (356)
T ss_pred -EecCCCeecCCCchhhhcccCc-----hhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHH
Confidence 2456678999999987765431 122233445555555568888888876 44444443
No 30
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.64 E-value=9.9e-16 Score=159.40 Aligned_cols=158 Identities=24% Similarity=0.242 Sum_probs=104.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+...|+||.|-|||-|..+... +++ ++. ..+|-|+|+||+||++.......++.+ ..+ .
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~-----~~~---~~~-------~~k~riiVlNK~DLad~~~~k~~iq~~----~~~-~ 102 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNE-----LFQ---DFL-------PPKPRIIVLNKMDLADPKEQKKIIQYL----EWQ-N 102 (335)
T ss_pred hcccccEEEEeeccccCCccccH-----HHH---Hhc-------CCCceEEEEecccccCchhhhHHHHHH----Hhh-c
Confidence 45679999999999998877542 222 221 234679999999999865433333322 222 2
Q ss_pred CCCcceEEEEecccCcC--hhhHHHHHHhh----------cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCC
Q 005972 367 APKLNGVYLVSARKDLG--VRNLLAFIKEL----------AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPI 434 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~G--veeLl~~I~~~----------l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~ 434 (666)
....+..+..+..+ +..++..+... .+.+..++|||.||||||||||++......+...+++.+.
T Consensus 103 ---~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~ 179 (335)
T KOG2485|consen 103 ---LESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAE 179 (335)
T ss_pred ---ccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCC
Confidence 22244444444333 55544433221 2245689999999999999999998766555566788999
Q ss_pred CCceeEEEE-EeeEeCCceEEEECCCCCCCCccc
Q 005972 435 PGTTLGILR-IGGILPAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 435 PGTT~~~~~-~~~~l~~~~~liDTPGi~~~~~~~ 467 (666)
||.|+.+.. +...-...++++||||+..|++..
T Consensus 180 pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 180 PGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 999998654 332234578999999999997643
No 31
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.61 E-value=1.9e-15 Score=157.79 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=105.3
Q ss_pred CceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh----
Q 005972 202 GFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d---- 273 (666)
|++.. ||+||+||| |+|++.+++.++++.++++ ++....+.......++. .|++.
T Consensus 1 g~V~l-iG~pnvGKSTLln~L~~~~~~~vs~~~~T----------------Tr~~i~~i~~~~~~qii~vDTPG~~~~~~ 63 (270)
T TIGR00436 1 GFVAI-LGRPNVGKSTLLNQLHGQKISITSPKAQT----------------TRNRISGIHTTGASQIIFIDTPGFHEKKH 63 (270)
T ss_pred CEEEE-ECCCCCCHHHHHHHHhCCcEeecCCCCCc----------------ccCcEEEEEEcCCcEEEEEECcCCCCCcc
Confidence 45554 999999966 5599999999988888765 33333333332222222 26543
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+.+.|.+.+.. ++.++|+|++|+|+.+.... .+.++..+.. ...|+++|+||+|+.++..
T Consensus 64 ~l~~~~~~~~~~--~l~~aDvvl~VvD~~~~~~~-----~~~i~~~l~~---------~~~p~ilV~NK~Dl~~~~~--- 124 (270)
T TIGR00436 64 SLNRLMMKEARS--AIGGVDLILFVVDSDQWNGD-----GEFVLTKLQN---------LKRPVVLTRNKLDNKFKDK--- 124 (270)
T ss_pred hHHHHHHHHHHH--HHhhCCEEEEEEECCCCCch-----HHHHHHHHHh---------cCCCEEEEEECeeCCCHHH---
Confidence 34455555556 67899999999999875321 1344454443 3468999999999975432
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
+..+...+....+ +..++++||++|.|+++|++.|.+.++++
T Consensus 125 -~~~~~~~~~~~~~---~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 125 -LLPLIDKYAILED---FKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred -HHHHHHHHHhhcC---CCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 3333333333333 44699999999999999999999887764
No 32
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.59 E-value=8e-16 Score=148.79 Aligned_cols=133 Identities=25% Similarity=0.362 Sum_probs=91.3
Q ss_pred HHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--cee
Q 005972 362 AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTL 439 (666)
Q Consensus 362 ~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~ 439 (666)
++++|++ |+.+|++++.|+++|.+.+.. ..++++|.+|||||||||+|++.....++.++.....| ||+
T Consensus 8 y~~~gy~----v~~~S~~~~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt 78 (161)
T PF03193_consen 8 YEKLGYP----VFFISAKTGEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT 78 (161)
T ss_dssp HHHTTSE----EEE-BTTTTTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS----S--------------
T ss_pred HHHcCCc----EEEEeCCCCcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC
Confidence 4688875 999999999999999999875 48899999999999999999998877777776666677 777
Q ss_pred EEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccccc--ceEEEeecc
Q 005972 440 GILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVG--GLMRLDLDQ 509 (666)
Q Consensus 440 ~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lg--gl~rld~l~ 509 (666)
....+. ++.+..|||||||....... +++ ..+...++++.+..-.|++.+|.|.. |.+....++
T Consensus 79 ~~~l~~--l~~g~~iIDTPGf~~~~l~~--~~~--~~l~~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~ 144 (161)
T PF03193_consen 79 HRELFP--LPDGGYIIDTPGFRSFGLWH--IDP--EELAQYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVE 144 (161)
T ss_dssp SEEEEE--ETTSEEEECSHHHHT--GCC--S-H--HHHHHCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHH
T ss_pred CeeEEe--cCCCcEEEECCCCCcccccc--CCH--HHHHHHHHHhccccCCCCccCCCCCCCCCChHHHHHH
Confidence 766555 67899999999999888753 333 34556788888777789999999987 555555444
No 33
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.48 E-value=7.2e-14 Score=144.91 Aligned_cols=166 Identities=20% Similarity=0.231 Sum_probs=113.4
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh----
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d---- 273 (666)
++++ ++|.|||||+|| |.+++.|++.+++|..+ +|.+..|.+.....|..+ |+.-
T Consensus 73 L~va-vIG~PNvGKStLtN~mig~kv~~vS~K~~T----------------Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 73 LYVA-VIGAPNVGKSTLTNQMIGQKVSAVSRKVHT----------------TRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEE-EEcCCCcchhhhhhHhhCCccccccccccc----------------eeeeeeEEEecCceEEEEecCCcccccch
Confidence 4555 499999998877 99999999999999988 777778888776666554 4322
Q ss_pred -HH-HHHHH---HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 274 -FD-RVIAT---RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 274 -~~-~~L~~---~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
.. ..+.+ ..+. ++..+|+|+.|+|+.+......+. ++..|+.+ .+.|-|||+||+|+++..
T Consensus 136 ~r~~~l~~s~lq~~~~--a~q~AD~vvVv~Das~tr~~l~p~----vl~~l~~y--------s~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 136 HRRHHLMMSVLQNPRD--AAQNADCVVVVVDASATRTPLHPR----VLHMLEEY--------SKIPSILVMNKIDKLKQK 201 (379)
T ss_pred hhhHHHHHHhhhCHHH--HHhhCCEEEEEEeccCCcCccChH----HHHHHHHH--------hcCCceeeccchhcchhh
Confidence 11 12222 3344 678999999999999743333333 33445543 235779999999998643
Q ss_pred CCh------------H-HHHHHHHHHH---------HhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 349 VSP------------T-RLDRWVRHRA---------KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 349 ~~~------------~-~L~~wl~~~~---------k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
... . ...+|.+.+. ...|.++|+.||+|||++|.|+++|.++|...++++
T Consensus 202 ~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 202 RLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred hHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 210 0 0122222111 012355689999999999999999999999887765
No 34
>PRK00089 era GTPase Era; Reviewed
Probab=99.48 E-value=1.1e-13 Score=145.72 Aligned_cols=159 Identities=21% Similarity=0.282 Sum_probs=104.9
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh----
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d---- 273 (666)
||++. +|+||+|||+| |++.+.++++.+.++++ ++.+..+.......++.+ |+..
T Consensus 6 g~V~i-iG~pn~GKSTLin~L~g~~~~~vs~~~~t----------------t~~~i~~i~~~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 6 GFVAI-VGRPNVGKSTLLNALVGQKISIVSPKPQT----------------TRHRIRGIVTEDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred EEEEE-ECCCCCCHHHHHHHHhCCceeecCCCCCc----------------ccccEEEEEEcCCceEEEEECCCCCCchh
Confidence 56654 99999996655 99999998887776654 333333333322223222 5542
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+.+.|...+.. +..++|+|++|+|+.+... .....+++.+.. ...|+++|+||+|++... .
T Consensus 69 ~l~~~~~~~~~~--~~~~~D~il~vvd~~~~~~----~~~~~i~~~l~~---------~~~pvilVlNKiDl~~~~---~ 130 (292)
T PRK00089 69 ALNRAMNKAAWS--SLKDVDLVLFVVDADEKIG----PGDEFILEKLKK---------VKTPVILVLNKIDLVKDK---E 130 (292)
T ss_pred HHHHHHHHHHHH--HHhcCCEEEEEEeCCCCCC----hhHHHHHHHHhh---------cCCCEEEEEECCcCCCCH---H
Confidence 33455555555 6788999999999988322 223444454442 245899999999998431 1
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.+...++.+.+..+ +..++++||+++.|+++|++.|.+.++++
T Consensus 131 ~l~~~~~~l~~~~~---~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 131 ELLPLLEELSELMD---FAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhhCC---CCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 24444444444333 56799999999999999999999887654
No 35
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.46 E-value=5.6e-14 Score=153.35 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=105.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChh-hHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRD-EQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~-~~~~ 477 (666)
.|++||+||||||||+|+|+++..+.+ ++.||||||.+.....+ +..+.+|||+|+...... .|... ..+.
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV-----~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~--~l~~~i~~Qa 77 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAIV-----SDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDED--ELQELIREQA 77 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCeeeEe-----ecCCCCccCCccceeEEcCceEEEEECCCCCcCCch--HHHHHHHHHH
Confidence 699999999999999999999887665 59999999987654444 457999999999854421 11111 2333
Q ss_pred HHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcC
Q 005972 478 VEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRL 547 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L 547 (666)
.....+.+...|+++...+++..+....+.|....++++ .+.||++.. ...+.+.+||..++|...
T Consensus 78 ~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi---LvvNK~D~~-~~e~~~~efyslG~g~~~ 143 (444)
T COG1160 78 LIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI---LVVNKIDNL-KAEELAYEFYSLGFGEPV 143 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE---EEEEcccCc-hhhhhHHHHHhcCCCCce
Confidence 456789999999999999999999999999987667764 456777754 345778999998888743
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.46 E-value=6.2e-14 Score=145.90 Aligned_cols=118 Identities=25% Similarity=0.282 Sum_probs=90.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChh-hH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRD-EQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~-~~ 475 (666)
.+.|++||+||||||||+|+|++.+.+.+ |+.|+|||+.++--... +.++.++||||++.|... |... ..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIv-----S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~---l~~~m~~ 77 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIV-----SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA---LGELMNK 77 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEee-----cCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchH---HHHHHHH
Confidence 36799999999999999999999887665 79999999976643222 358899999999999653 3221 12
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVS 526 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~ 526 (666)
......++++...|+++..+.+..++.+.++.++....++++ +.|+++
T Consensus 78 ~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil---~iNKID 125 (298)
T COG1159 78 AARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVIL---VVNKID 125 (298)
T ss_pred HHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEE---EEEccc
Confidence 233457889999999999999999999999998874456543 456666
No 37
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=1.9e-13 Score=150.02 Aligned_cols=164 Identities=23% Similarity=0.252 Sum_probs=106.2
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc-cc---cCchhHH----
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NL---IPDFDFD---- 275 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~-~~---iP~~d~~---- 275 (666)
.++||+||+||| |||.|.+.|. +.+.++++ |+..++|.+.....+ +. +|+....
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~-~vs~~p~T----------------T~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~ 224 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKP-KVADYPFT----------------TLVPNLGVVRVDDERSFVVADIPGLIEGASEG 224 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcc-cccCCCCC----------------ccCcEEEEEEeCCCcEEEEEeCCCccccccch
Confidence 577999999965 5599999885 56666666 777777777543322 33 3765421
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
..|...+.+ .+.++|+|++|+|+..+....+......+++.|..+.. .+ ..+|+|+|+||+|++.+.. +.
T Consensus 225 ~~Lg~~~l~--~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~--~L--~~kP~IlVlNKiDl~~~~e----l~ 294 (390)
T PRK12298 225 AGLGIRFLK--HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP--KL--AEKPRWLVFNKIDLLDEEE----AE 294 (390)
T ss_pred hhHHHHHHH--HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh--hh--cCCCEEEEEeCCccCChHH----HH
Confidence 124444445 67889999999999854333343334455555554310 11 1368999999999976543 33
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
..++.+.+.++. ...++++||+++.|+++|++.|.+++++
T Consensus 295 ~~l~~l~~~~~~--~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 295 ERAKAIVEALGW--EGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHHhCC--CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 334443333331 1248999999999999999999887654
No 38
>PRK15494 era GTPase Era; Provisional
Probab=99.45 E-value=3.2e-13 Score=145.80 Aligned_cols=156 Identities=14% Similarity=0.171 Sum_probs=101.3
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh-----H
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD-----F 274 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d-----~ 274 (666)
-.++||+||+|||+| |++.+.+.++++.+.++ ++....+.+.....++.+ |+.+ +
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~t----------------Tr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l 117 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQT----------------TRSIITGIITLKDTQVILYDTPGIFEPKGSL 117 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCC----------------ccCcEEEEEEeCCeEEEEEECCCcCCCcccH
Confidence 345699999996655 99999998877776654 333333333332233322 6542 3
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH
Q 005972 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...|.+.++. ++.++|+|++|+|+.+... .....+++.++. ...|+|+|+||+|+..+. ...+
T Consensus 118 ~~~~~r~~~~--~l~~aDvil~VvD~~~s~~----~~~~~il~~l~~---------~~~p~IlViNKiDl~~~~--~~~~ 180 (339)
T PRK15494 118 EKAMVRCAWS--SLHSADLVLLIIDSLKSFD----DITHNILDKLRS---------LNIVPIFLLNKIDIESKY--LNDI 180 (339)
T ss_pred HHHHHHHHHH--HhhhCCEEEEEEECCCCCC----HHHHHHHHHHHh---------cCCCEEEEEEhhcCcccc--HHHH
Confidence 4455565555 6789999999999876322 233445555543 234678999999986431 1223
Q ss_pred HHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
..++ .... .+..++++||++|.|+++|++.|.++++++
T Consensus 181 ~~~l----~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 181 KAFL----TENH--PDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred HHHH----HhcC--CCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 3332 2222 145699999999999999999999988865
No 39
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=150.98 Aligned_cols=180 Identities=28% Similarity=0.476 Sum_probs=124.8
Q ss_pred ceeecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005972 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~ 324 (666)
..+|+||+.+.|++..... ...|+ .+.+.+.+. ..+-.++..|+|..|.+++..+ .+....
T Consensus 75 ~~~cpgc~~l~~~~~~~~~---~v~~~-~y~k~~~~~------~~~~~~~~~vvd~~d~p~~i~p--------~~~~~v- 135 (572)
T KOG1249|consen 75 AIVCPGCGFLEHMRAALAV---PVVPG-EYKKEKSEK------QENPALARKVVDLSDEPCSIDP--------LLTNDV- 135 (572)
T ss_pred cccCCcchHHHHhhhhccC---ccChh-hhhhhhhhh------hhcccceEEeeecccCcccccc--------chhhcc-
Confidence 4689999999988776532 22343 333333332 2234578899999998765432 222211
Q ss_pred hhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHH----HhC----CCC--CcceEEEEecccCcChhhHHHHHHhh
Q 005972 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA----KAG----GAP--KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~----k~~----g~~--~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..+.+++++||+|++|+....-........+. +.- ..+ .|.++..+|+++++|+++|+-.|...
T Consensus 136 ------~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 136 ------GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred ------cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhhe
Confidence 12347999999999998764333332211111 010 111 26678899999999999999999998
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccccce------eecccccCCCCceeEEEEEeeEeC
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVK------VSKLTEAPIPGTTLGILRIGGILP 449 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~------~~~~t~S~~PGTT~~~~~~~~~l~ 449 (666)
+.-++.++.+|++||||||++|+|+...... +.++|++++||||+...+++...+
T Consensus 210 ~df~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p 270 (572)
T KOG1249|consen 210 VDFRGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVP 270 (572)
T ss_pred eeccCceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCccccc
Confidence 8888999999999999999999999876542 456799999999999888875433
No 40
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.2e-12 Score=144.07 Aligned_cols=248 Identities=20% Similarity=0.243 Sum_probs=157.4
Q ss_pred CCCCCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHH--hhhcCCceeeccc------ccceecce--ec-cccc
Q 005972 198 LDLDGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREA--QKEKGEVTVCARC------HSLRNYGQ--VK-NEVA 265 (666)
Q Consensus 198 ~dl~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a--~~~~~~~~vCqRC------~rLr~ygk--v~-~~~~ 265 (666)
.+|...+.-++|-=-.|+| ||-.+.+.-|--. +| ..+....+|.+-| .-++.+++ +. +...
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqeg-------eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~l 543 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEG-------EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLL 543 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccc-------cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeE
Confidence 3577888888888888877 5565555431100 01 0112233444444 23333333 21 1222
Q ss_pred ccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC
Q 005972 266 ENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL 345 (666)
Q Consensus 266 ~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL 345 (666)
-+..|++.....+.++ ....||++|+|||+.+ |..|+.+... +.|+. ++.|+|+++||||.|
T Consensus 544 vIdtpghEsFtnlRsr-----gsslC~~aIlvvdImh--GlepqtiESi--~lLR~---------rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 544 VIDTPGHESFTNLRSR-----GSSLCDLAILVVDIMH--GLEPQTIESI--NLLRM---------RKTPFIVALNKIDRL 605 (1064)
T ss_pred EecCCCchhhhhhhhc-----cccccceEEEEeehhc--cCCcchhHHH--HHHHh---------cCCCeEEeehhhhhh
Confidence 2334888776666655 6678999999999999 7677665432 55554 567999999999998
Q ss_pred CCCCCh---------------------HHHHHHHHHHHHhCCC-----------CCcceEEEEecccCcChhhHHHHHHh
Q 005972 346 PSQVSP---------------------TRLDRWVRHRAKAGGA-----------PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 346 pk~~~~---------------------~~L~~wl~~~~k~~g~-----------~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
-.+... .++...+.++. +.|+ ..+..++|+||.+|.|+.+|+-+|.+
T Consensus 606 Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa-EQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 606 YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA-EQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 544320 11222222222 1121 12456899999999999999999987
Q ss_pred hcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEEeeEeCCceEEEECCCCCCCCcccccCC
Q 005972 394 LAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLN 471 (666)
Q Consensus 394 ~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~ 471 (666)
+.. .++...|.....+..+.+.+...+| ||.|++.+.+.+..+-.|+ .+|+..|-..+.+
T Consensus 685 ltQ---------------k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~Iv-vcG~~GpIvTtIR-- 746 (1064)
T KOG1144|consen 685 LTQ---------------KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIV-VCGLQGPIVTTIR-- 746 (1064)
T ss_pred HHH---------------HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEE-EcCCCCchhHHHH--
Confidence 643 3455666655444444555566666 9999999999888777777 7999988876543
Q ss_pred hhhHHHHHhhhhcCceeEEe
Q 005972 472 RDEQKMVEIRKELQPRTYRV 491 (666)
Q Consensus 472 ~~~~~~~~~~kel~~~~f~l 491 (666)
.+.++.|.+++++..-++
T Consensus 747 --aLLtP~PlkElRVk~~Y~ 764 (1064)
T KOG1144|consen 747 --ALLTPQPLKELRVKGTYV 764 (1064)
T ss_pred --HhcCCcchHhhcccccee
Confidence 456667889988764433
No 41
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.30 E-value=7.9e-13 Score=127.63 Aligned_cols=144 Identities=22% Similarity=0.207 Sum_probs=83.9
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCch------hH
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF------DF 274 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~------d~ 274 (666)
.|.||+||+|||+| |+|.+.+... ...+ +.++. +..|.+.....++. +|+. ..
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v-~n~p---------G~Tv~-------~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKV-GNWP---------GTTVE-------KKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEE-EEST---------TSSSE-------EEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEECCCCCCHHHHHHHHHCCCcee-cCCC---------CCCee-------eeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 36799999997765 9999999332 2222 22333 33333332111211 2431 22
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH
Q 005972 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+...... ....|+|++|+|++... + .-++...|.. -..|+++|+||+|++.+....-.
T Consensus 66 ee~v~~~~l~---~~~~D~ii~VvDa~~l~-----r-~l~l~~ql~e---------~g~P~vvvlN~~D~a~~~g~~id- 126 (156)
T PF02421_consen 66 EERVARDYLL---SEKPDLIIVVVDATNLE-----R-NLYLTLQLLE---------LGIPVVVVLNKMDEAERKGIEID- 126 (156)
T ss_dssp HHHHHHHHHH---HTSSSEEEEEEEGGGHH-----H-HHHHHHHHHH---------TTSSEEEEEETHHHHHHTTEEE--
T ss_pred HHHHHHHHHh---hcCCCEEEEECCCCCHH-----H-HHHHHHHHHH---------cCCCEEEEEeCHHHHHHcCCEEC-
Confidence 3333332221 35799999999998731 2 1233344443 24689999999999876542111
Q ss_pred HHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHH
Q 005972 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFI 391 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I 391 (666)
.+.+.+.+|.+ |+++||+++.|+++|++.|
T Consensus 127 ---~~~Ls~~Lg~p----vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 127 ---AEKLSERLGVP----VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ---HHHHHHHHTS-----EEEEBTTTTBTHHHHHHHH
T ss_pred ---HHHHHHHhCCC----EEEEEeCCCcCHHHHHhhC
Confidence 22233456765 9999999999999999876
No 42
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.30 E-value=4.9e-12 Score=138.60 Aligned_cols=123 Identities=22% Similarity=0.257 Sum_probs=89.5
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChh
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRD 473 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~ 473 (666)
+.++.+++++|+||||||||+|+|+++....+ ++.||||||++.....+++ .+.|+||.|++.......++ -
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-----TdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i--G 286 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIV-----TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI--G 286 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEe-----cCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH--H
Confidence 34678999999999999999999999987766 5999999999987655554 67999999999555432211 1
Q ss_pred hHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 474 EQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 474 ~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
..+.....++.+.+.|+++..+.+.-.+...++.+.. .+++ +++-||.++.
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~-~~~~---i~v~NK~DL~ 337 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPK-KKPI---IVVLNKADLV 337 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhccc-CCCE---EEEEechhcc
Confidence 1233445677889999999988777777777773332 2333 2345666654
No 43
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=1.2e-11 Score=138.97 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=95.0
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCch----hHHH
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF----DFDR 276 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~----d~~~ 276 (666)
.++||+||+||| |||+|.+.|..+ +..+++ |+.-++|.+.....++. +|+. +..+
T Consensus 162 V~LVG~PNAGKSTLln~Ls~akpkI-adypfT----------------Tl~P~lGvv~~~~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 162 VGLVGFPSAGKSSLISALSAAKPKI-ADYPFT----------------TLVPNLGVVQAGDTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred EEEEEcCCCCHHHHHHHHhcCCccc-cccCcc----------------cccceEEEEEECCeEEEEEECCCCccccchhh
Confidence 466999999965 559998877443 333333 33334444433222222 3653 2223
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCC-CCCcHHHHHHHHHHHHHhhhhh-------hhhcCCCcEEEEEECCCCCCCC
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFD-GMFPKRAAKSLFKKLEEAKDDA-------KLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~-gs~p~~i~~~I~~~L~~~~~~~-------~~~~~~kpvILVlNKiDLLpk~ 348 (666)
-|...+.+ .+..+|+||+|||+.+.. +..|......+...|..+.... .+ ..+|+|+|+||+|+....
T Consensus 225 gLg~~fLr--hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l--~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 225 GLGLDFLR--HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL--AERPRLVVLNKIDVPDAR 300 (500)
T ss_pred HHHHHHHH--HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh--cCCCEEEEEECccchhhH
Confidence 34444455 567899999999998643 2223222233333343321100 01 246899999999996433
Q ss_pred CChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. +..+++......+. .|++|||+++.|+++|+..|.+.+
T Consensus 301 e----l~e~l~~~l~~~g~----~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 301 E----LAEFVRPELEARGW----PVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred H----HHHHHHHHHHHcCC----eEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 33333333344454 399999999999999999988754
No 44
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=121.47 Aligned_cols=159 Identities=25% Similarity=0.279 Sum_probs=105.0
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhh-hhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHH--
Q 005972 201 DGFTPAGVGYGNIT-EELVERSKKKK-LSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDR-- 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~slLn~l~~~K-~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~-- 276 (666)
++.-.|.+||-||| ||++|.|.++| +.+++..+-. |++-+|=.+.+...-+.+|++-|-+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGr----------------Tq~iNff~~~~~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGR----------------TQLINFFEVDDELRLVDLPGYGYAKVP 86 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCc----------------cceeEEEEecCcEEEEeCCCcccccCC
Confidence 34556778999999 55779999976 4666665532 6666554444432223457655432
Q ss_pred ---------HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 277 ---------VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 277 ---------~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.+.+.+.. .++...+++|+|+++++ ...++.++++|... ..|+++|+||+|.+++
T Consensus 87 k~~~e~w~~~i~~YL~~---R~~L~~vvlliD~r~~~----~~~D~em~~~l~~~---------~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 87 KEVKEKWKKLIEEYLEK---RANLKGVVLLIDARHPP----KDLDREMIEFLLEL---------GIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHHHHHHHHHHHhh---chhheEEEEEEECCCCC----cHHHHHHHHHHHHc---------CCCeEEEEEccccCCh
Confidence 33333332 24577899999999953 45678889998873 4589999999999987
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcce--EEEEecccCcChhhHHHHHHhhc
Q 005972 348 QVSPTRLDRWVRHRAKAGGAPKLNG--VYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~~--V~~VSAkkg~GveeLl~~I~~~l 395 (666)
......+.. ..+.++.+.... ++++|+.++.|+++|...|.+.+
T Consensus 151 ~~~~k~l~~----v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 151 SERNKQLNK----VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred hHHHHHHHH----HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 653222222 222333221222 88999999999999999998764
No 45
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.25 E-value=2.3e-11 Score=131.01 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=93.6
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccc-ccc---ccCchh----HH
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEV-AEN---LIPDFD----FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~-~~~---~iP~~d----~~ 275 (666)
.++||+||+||| +||++...+.. ....+.+ +..-+.|.+.... .++ .+|+.. ..
T Consensus 160 V~lvG~pnaGKSTLl~~lt~~~~~-va~y~fT----------------T~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~ 222 (329)
T TIGR02729 160 VGLVGLPNAGKSTLISAVSAAKPK-IADYPFT----------------TLVPNLGVVRVDDGRSFVIADIPGLIEGASEG 222 (329)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC----------------ccCCEEEEEEeCCceEEEEEeCCCcccCCccc
Confidence 467899999966 55988876622 1111111 2222222222111 111 235432 11
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+.|...+.+ .+..++++++|+|+.+...+.+.+....+.+.|..+.. .+ ..+|+++|+||+|+.+... +.
T Consensus 223 ~gLg~~flr--hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~--~l--~~kp~IIV~NK~DL~~~~~----~~ 292 (329)
T TIGR02729 223 AGLGHRFLK--HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP--EL--AEKPRIVVLNKIDLLDEEE----LA 292 (329)
T ss_pred ccHHHHHHH--HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh--hh--ccCCEEEEEeCccCCChHH----HH
Confidence 234444444 56679999999999986443444444445555544311 11 2468999999999976532 34
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.+.+++.+..+. .++++||+++.|+++|++.|.+.+
T Consensus 293 ~~~~~l~~~~~~----~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 293 ELLKELKKALGK----PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHcCC----cEEEEEccCCcCHHHHHHHHHHHh
Confidence 444444444453 389999999999999999987653
No 46
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.20 E-value=7.3e-11 Score=112.66 Aligned_cols=95 Identities=23% Similarity=0.190 Sum_probs=60.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. . +......+.+.+..... ....+|+++|+||+|+.+... ...|+..+.....
T Consensus 75 ~~~~~d~vi~v~D~~~~~-~-~~~~~~~~~~~l~~~~~----~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDD-D-PVEDYKTIRNELELYNP----ELLEKPRIVVLNKIDLLDEEE----LFELLKELLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCC-C-HHHHHHHHHHHHHHhCc----cccccccEEEEEchhcCCchh----hHHHHHHHHhhCC
Confidence 345689999999999852 1 11222333344433210 002468999999999987654 3444444444321
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...++.+||+++.|+++|++.|.++
T Consensus 145 ---~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 ---GKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ---CCCEEEEecCCCCCHHHHHHHHHhh
Confidence 1248999999999999999988754
No 47
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=6.5e-11 Score=127.73 Aligned_cols=159 Identities=23% Similarity=0.247 Sum_probs=92.1
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecc-cccccc---cCchh----HH
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKN-EVAENL---IPDFD----FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~-~~~~~~---iP~~d----~~ 275 (666)
.++||+||+||| +||++...|..+ ...+.+ |..-+.|.+.. ...++. +|+.. ..
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~v-a~ypfT----------------T~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKI-ADYPFT----------------TLHPNLGVVRVDDYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCcc-CCCCCc----------------eeCceEEEEEeCCCcEEEEEeCCCccCCCCcc
Confidence 467999999966 459888776332 222222 33333333322 111122 35432 12
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+-|...+.+ .++.++++++|+|+.+.. +.+....+...|..+.. .+ ..+|+++|+||+|+.+..... .
T Consensus 224 ~gLg~~flr--hie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~~~--~L--~~kp~IIV~NKiDL~~~~~~~---~ 291 (335)
T PRK12299 224 AGLGHRFLK--HIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKYSP--EL--ADKPRILVLNKIDLLDEEEER---E 291 (335)
T ss_pred ccHHHHHHH--HhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHhhh--hc--ccCCeEEEEECcccCCchhHH---H
Confidence 234444455 567799999999998754 22333444455544311 11 246899999999998654311 1
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
...+...+..+. .++++||+++.|+++|++.|.+.+.
T Consensus 292 ~~~~~~~~~~~~----~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 292 KRAALELAALGG----PVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred HHHHHHHHhcCC----CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 111222233332 3899999999999999999987643
No 48
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.19 E-value=7.8e-11 Score=111.97 Aligned_cols=137 Identities=20% Similarity=0.310 Sum_probs=92.5
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhH-HHHHHHHhc
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDF-DRVIATRLM 283 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~-~~~L~~~l~ 283 (666)
..||+...|||+| ++|.++.. ..+|-|+ ...++.+ +..|+.-+ .+.+.+.+.
T Consensus 5 mliG~~g~GKTTL~q~L~~~~~--~~~KTq~------------------i~~~~~~------IDTPGEyiE~~~~y~aLi 58 (143)
T PF10662_consen 5 MLIGPSGSGKTTLAQALNGEEI--RYKKTQA------------------IEYYDNT------IDTPGEYIENPRFYHALI 58 (143)
T ss_pred EEECCCCCCHHHHHHHHcCCCC--CcCccce------------------eEecccE------EECChhheeCHHHHHHHH
Confidence 4589999999888 66666542 1222211 1111111 22354322 345666666
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHH
Q 005972 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 284 ~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k 363 (666)
. ...++|+|++|.|+.++...+|+..... =++|+|-|+||+|+.+......+..+|+ +
T Consensus 59 ~--ta~dad~V~ll~dat~~~~~~pP~fa~~----------------f~~pvIGVITK~Dl~~~~~~i~~a~~~L----~ 116 (143)
T PF10662_consen 59 V--TAQDADVVLLLQDATEPRSVFPPGFASM----------------FNKPVIGVITKIDLPSDDANIERAKKWL----K 116 (143)
T ss_pred H--HHhhCCEEEEEecCCCCCccCCchhhcc----------------cCCCEEEEEECccCccchhhHHHHHHHH----H
Confidence 6 6789999999999999888888642211 1358999999999985555444555554 5
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
..| +.+||.||+.+|.|+++|.++|.+
T Consensus 117 ~aG---~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 117 NAG---VKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred HcC---CCCeEEEECCCCcCHHHHHHHHhC
Confidence 667 567999999999999999999863
No 49
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.17 E-value=5.1e-11 Score=130.72 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=101.0
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc-------Cch
Q 005972 201 DGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI-------PDF 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~slLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i-------P~~ 272 (666)
+|+--+++|+|||| |||||.|.++-.+|++.-+-+ ||+.....+.-....+.+ -..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT----------------TRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT----------------TRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC----------------ccceEEEEEEECCEEEEEEecCCcccCc
Confidence 69999999999999 668899999997877766655 776655544433333222 111
Q ss_pred hHHHHH-HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh
Q 005972 273 DFDRVI-ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 273 d~~~~L-~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
+.-..+ .++.++ .++++|+|++|+|+..+.. ..+..++..+. .++|+++|+||+||..+....
T Consensus 280 d~VE~iGIeRs~~--~i~~ADlvL~v~D~~~~~~----~~d~~~~~~~~----------~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 280 DVVERIGIERAKK--AIEEADLVLFVLDASQPLD----KEDLALIELLP----------KKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred cHHHHHHHHHHHH--HHHhCCEEEEEEeCCCCCc----hhhHHHHHhcc----------cCCCEEEEEechhcccccccc
Confidence 222222 234455 6789999999999998522 22333333111 456899999999999765421
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. + .+ ..+ ..++.+||++|.|++.|.+.|.+++.
T Consensus 344 ~-~-~~------~~~----~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 344 S-E-KL------ANG----DAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred h-h-hc------cCC----CceEEEEecCccCHHHHHHHHHHHHh
Confidence 1 1 11 112 13889999999999999999988654
No 50
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.16 E-value=3e-11 Score=119.91 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=89.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCccccc---CChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMR---LNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~---L~~~~~ 475 (666)
..|+++|++|||||||||+|+++... +.+|..||.|+-+..+. +...+.++|.||+.-....... ....-.
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~L----ArtSktPGrTq~iNff~--~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNL----ARTSKTPGRTQLINFFE--VDDELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcce----eecCCCCCccceeEEEE--ecCcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 47999999999999999999996642 23479999999887765 5667999999999865542211 011112
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVS 526 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~ 526 (666)
.++.-+..++.....++....+..-+...++++.....++++.+-..++++
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK 149 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 345556678888888999888888888888888877777655555556555
No 51
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.15 E-value=1.9e-10 Score=127.54 Aligned_cols=158 Identities=22% Similarity=0.266 Sum_probs=95.1
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccc-ccccc---cCchh----HH
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNE-VAENL---IPDFD----FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~-~~~~~---iP~~d----~~ 275 (666)
.++||+|||||| +||++...|..++ ..+.+ |..-++|.+... ..++. +|+.. ..
T Consensus 161 VglVG~pNaGKSTLLn~Lt~ak~kIa-~ypfT----------------Tl~PnlG~v~~~~~~~~~laD~PGliega~~~ 223 (424)
T PRK12297 161 VGLVGFPNVGKSTLLSVVSNAKPKIA-NYHFT----------------TLVPNLGVVETDDGRSFVMADIPGLIEGASEG 223 (424)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccc-cCCcc----------------eeceEEEEEEEeCCceEEEEECCCCccccccc
Confidence 467999999965 5599988774432 22222 333344444322 12222 36542 12
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
..|...+.+ .+..++++++|+|+.+..+..+......+.+.|..+.. .+ ..+|+++|+||+||... ...+.
T Consensus 224 ~gLg~~fLr--hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~--~L--~~kP~IVV~NK~DL~~~---~e~l~ 294 (424)
T PRK12297 224 VGLGHQFLR--HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP--RL--LERPQIVVANKMDLPEA---EENLE 294 (424)
T ss_pred chHHHHHHH--HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch--hc--cCCcEEEEEeCCCCcCC---HHHHH
Confidence 234444444 56779999999999875443454444555566654311 11 24689999999997322 12233
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.+ .+.++. .++++||+++.|+++|++.|.+.+.
T Consensus 295 ~l----~~~l~~----~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 295 EF----KEKLGP----KVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred HH----HHHhCC----cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33 233332 3899999999999999999987643
No 52
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.15 E-value=1e-10 Score=109.41 Aligned_cols=84 Identities=25% Similarity=0.230 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+..... ...+..+++. ...|+++|+||+|+.+.... .. ....++
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~----~~~~~~~~~~---------~~~piiiv~nK~D~~~~~~~---~~-----~~~~~~ 131 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPA----DEEIAKYLRK---------SKKPVILVVNKVDNIKEEDE---AA-----EFYSLG 131 (157)
T ss_pred HHHhCCEEEEEEeccccCCcc----HHHHHHHHHh---------cCCCEEEEEECcccCChHHH---HH-----HHHhcC
Confidence 456799999999998743322 2234444543 23689999999999865431 11 123444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+..++.+||++|.|+++|++.|.+.
T Consensus 132 ---~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 132 ---FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ---CCCeEEEecccCCCHHHHHHHHHhh
Confidence 3358999999999999999998764
No 53
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.15 E-value=1.2e-10 Score=112.55 Aligned_cols=132 Identities=21% Similarity=0.170 Sum_probs=75.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|+++|.||||||||||+|++.+ ..+ +++||||.+.......+ +..+.++||||+..... .+.++....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v-----~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~----~s~ee~v~~ 71 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKV-----GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSS----KSEEERVAR 71 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEE-----EESTTSSSEEEEEEEEETTEEEEEEE----SSSSS----SSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-cee-----cCCCCCCeeeeeEEEEecCceEEEEECCCcccCCC----CCcHHHHHH
Confidence 68999999999999999999876 333 58999999976644333 34789999999976433 233332222
Q ss_pred Hh--hhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccc-cccccHHHHHHhhcCCc
Q 005972 479 EI--RKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHL-GKIENADEIWKNHVGIR 546 (666)
Q Consensus 479 ~~--~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~-tk~e~a~e~~~k~~g~~ 546 (666)
.. ....+...+.+++.+ + --++..+..+.....++++ +.|+++.-. ....--.+.+.+.+|..
T Consensus 72 ~~l~~~~~D~ii~VvDa~~-l-~r~l~l~~ql~e~g~P~vv---vlN~~D~a~~~g~~id~~~Ls~~Lg~p 137 (156)
T PF02421_consen 72 DYLLSEKPDLIIVVVDATN-L-ERNLYLTLQLLELGIPVVV---VLNKMDEAERKGIEIDAEKLSERLGVP 137 (156)
T ss_dssp HHHHHTSSSEEEEEEEGGG-H-HHHHHHHHHHHHTTSSEEE---EEETHHHHHHTTEEE-HHHHHHHHTS-
T ss_pred HHHhhcCCCEEEEECCCCC-H-HHHHHHHHHHHHcCCCEEE---EEeCHHHHHHcCCEECHHHHHHHhCCC
Confidence 22 355677788888754 2 2234333333344456533 445555322 11222233345555653
No 54
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=7.4e-11 Score=129.35 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=78.1
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCC-cccccCCh
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPH-LMSMRLNR 472 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~-~~~~~L~~ 472 (666)
+..+..++++|+||||||||+|+|.+.....+ |+.||||||.+.....+++ .+.|+||.|+.... .....+.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIV-----Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g- 338 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIV-----SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG- 338 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEe-----CCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh-
Confidence 45678999999999999999999999887665 6999999999887655543 78999999999822 2111110
Q ss_pred hhHHHHHhhhhcCceeEEecCCCcccccceEEEeeccc
Q 005972 473 DEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQA 510 (666)
Q Consensus 473 ~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~ 510 (666)
......-.++.+.+.+++++..+.+-.++...+.+..
T Consensus 339 -I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~ 375 (531)
T KOG1191|consen 339 -IERARKRIERADVILLVVDAEESDTESDLKIARILET 375 (531)
T ss_pred -HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHH
Confidence 1111223455678899999987777766664444443
No 55
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.11 E-value=8.8e-10 Score=104.06 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=55.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+. ..+.. .. .+..+... +.+|+++|+||+|+...... ......+....+..+
T Consensus 71 ~~~~ad~ii~V~d~~~~--~~~~~-~~-~~~~~~~~--------~~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 137 (164)
T cd04171 71 GAGGIDLVLLVVAADEG--IMPQT-RE-HLEILELL--------GIKRGLVVLTKADLVDEDWL-ELVEEEIRELLAGTF 137 (164)
T ss_pred hhhcCCEEEEEEECCCC--ccHhH-HH-HHHHHHHh--------CCCcEEEEEECccccCHHHH-HHHHHHHHHHHHhcC
Confidence 45679999999999862 22211 11 11222221 23489999999999754211 111122222222221
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.. ...++++||++|.|+++|++.|..
T Consensus 138 ~~-~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 138 LA-DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cC-CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 11 234999999999999999998864
No 56
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.09 E-value=3e-10 Score=123.36 Aligned_cols=153 Identities=26% Similarity=0.226 Sum_probs=84.9
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCch----
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF---- 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~---- 272 (666)
.++..++|||||+||| ++|++.+.+ .+++.+..+ .......++. ..+ ..++. .|++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~t-------T~d~~~~~i~---~~~-----~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFA-------TLDPTTRRLD---LPD-----GGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCcc-------ccCCEEEEEE---eCC-----CceEEEEecCcccccC
Confidence 3577889999999955 569999876 333333322 0111111111 101 01111 1333
Q ss_pred --hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC
Q 005972 273 --DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS 350 (666)
Q Consensus 273 --d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~ 350 (666)
++...+... .. .+.++|+|++|+|+.++... .. ...+...|..... ..+|+++|+||+|+.+...
T Consensus 252 ~~~lie~f~~t-le--~~~~ADlil~VvD~s~~~~~--~~-~~~~~~~L~~l~~------~~~piIlV~NK~Dl~~~~~- 318 (351)
T TIGR03156 252 PHELVAAFRAT-LE--EVREADLLLHVVDASDPDRE--EQ-IEAVEKVLEELGA------EDIPQLLVYNKIDLLDEPR- 318 (351)
T ss_pred CHHHHHHHHHH-HH--HHHhCCEEEEEEECCCCchH--HH-HHHHHHHHHHhcc------CCCCEEEEEEeecCCChHh-
Confidence 111112211 12 35679999999999986421 11 1222333433211 2468999999999975422
Q ss_pred hHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 351 PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 351 ~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+..+ .. + ...++++||++|.|+++|++.|.+.
T Consensus 319 ---v~~~-----~~-~---~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 ---IERL-----EE-G---YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---HHHH-----Hh-C---CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2221 11 1 1238899999999999999998753
No 57
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.07 E-value=1.8e-09 Score=100.56 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++...... .+... ..+|+++|+||+||.+.....+.+..|. +..+
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~----~~~~~------------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~----~~~~ 118 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP----GFASI------------FVKPVIGLVTKIDLAEADVDIERAKELL----ETAG 118 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh----hHHHh------------ccCCeEEEEEeeccCCcccCHHHHHHHH----HHcC
Confidence 35689999999999987654321 11111 1138999999999976443333334443 3334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHH
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
...++.+||++|.|+++|++.|.
T Consensus 119 ---~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 119 ---AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ---CCcEEEEecCCCCCHHHHHHHHh
Confidence 22488999999999999998874
No 58
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.06 E-value=1.4e-10 Score=105.09 Aligned_cols=90 Identities=32% Similarity=0.301 Sum_probs=61.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|+++|++|||||||||+|++..... ++..||+|+........++ ..+.++||||+.......... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-----~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-----VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-----ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-----ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHH
Confidence 48999999999999999999755433 3688999998854333333 356899999998765532210 0112233
Q ss_pred HhhhhcCceeEEecCCC
Q 005972 479 EIRKELQPRTYRVKARQ 495 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~ 495 (666)
.....++...|.++...
T Consensus 75 ~~~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASN 91 (116)
T ss_dssp HHHCTESEEEEEEETTS
T ss_pred HHHHHCCEEEEEEECCC
Confidence 44467777888888655
No 59
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.05 E-value=5e-10 Score=117.29 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=96.0
Q ss_pred eccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc-cc---cC----chhHHHH
Q 005972 207 GVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NL---IP----DFDFDRV 277 (666)
Q Consensus 207 ~vGrpNvg-~slLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~-~~---iP----~~d~~~~ 277 (666)
.||.||+| +||||.|...|- +...-++| |---|-|.+...... +. +| +-+.++=
T Consensus 201 LVG~PNAGKSTLL~als~AKp-kVa~YaFT----------------TL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG 263 (366)
T KOG1489|consen 201 LVGFPNAGKSTLLNALSRAKP-KVAHYAFT----------------TLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG 263 (366)
T ss_pred eecCCCCcHHHHHHHhhccCC-ccccccee----------------eeccccceeeccccceeEeccCccccccccccCc
Confidence 47999999 556698888883 33333332 111133433332222 11 24 3344444
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHH
Q 005972 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
|...+.+ .++.++.++||||+..+.-..|.+..+.++..|+.+.. ....+|.++|+||+|+...+. .+
T Consensus 264 lG~~FLr--HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek----~L~~rp~liVaNKiD~~eae~------~~ 331 (366)
T KOG1489|consen 264 LGYKFLR--HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK----GLADRPALIVANKIDLPEAEK------NL 331 (366)
T ss_pred ccHHHHH--HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh----hhccCceEEEEeccCchhHHH------HH
Confidence 4445555 67889999999999987444455555556666665432 113468999999999963322 22
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
++.+.+.+.- .+|+++||+++.|+++|++.|+..
T Consensus 332 l~~L~~~lq~---~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 332 LSSLAKRLQN---PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHHHHHcCC---CcEEEeeeccccchHHHHHHHhhc
Confidence 3334444432 269999999999999999988753
No 60
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.04 E-value=1.5e-09 Score=102.10 Aligned_cols=83 Identities=24% Similarity=0.198 Sum_probs=56.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.++.. ...++..+.. ..+|+++|+||+|+.+... +..+.+.+.+.++.
T Consensus 73 ~~~d~vi~v~d~~~~~~------~~~~~~~~~~---------~~~~~iiv~NK~Dl~~~~~----~~~~~~~~~~~~~~- 132 (158)
T cd01879 73 EKPDLIVNVVDATNLER------NLYLTLQLLE---------LGLPVVVALNMIDEAEKRG----IKIDLDKLSELLGV- 132 (158)
T ss_pred CCCcEEEEEeeCCcchh------HHHHHHHHHH---------cCCCEEEEEehhhhccccc----chhhHHHHHHhhCC-
Confidence 57999999999987421 1122222322 2468999999999976543 22233333444454
Q ss_pred CcceEEEEecccCcChhhHHHHHHhh
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++++||++|.|+++|++.|...
T Consensus 133 ---~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 133 ---PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---CeEEEEccCCCCHHHHHHHHHHH
Confidence 38999999999999999988765
No 61
>COG2262 HflX GTPases [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=118.33 Aligned_cols=102 Identities=24% Similarity=0.239 Sum_probs=66.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|||+.++. ...-.......|...+. ..+|+|+|+||+|+++.... +.. + .. +.
T Consensus 269 ~~~aDlllhVVDaSdp~---~~~~~~~v~~vL~el~~------~~~p~i~v~NKiD~~~~~~~---~~~-~----~~-~~ 330 (411)
T COG2262 269 VKEADLLLHVVDASDPE---ILEKLEAVEDVLAEIGA------DEIPIILVLNKIDLLEDEEI---LAE-L----ER-GS 330 (411)
T ss_pred hhcCCEEEEEeecCChh---HHHHHHHHHHHHHHcCC------CCCCEEEEEecccccCchhh---hhh-h----hh-cC
Confidence 46899999999999973 22212233344444322 34799999999999976541 111 1 11 11
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCCCc--cEEEEeecCCC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGPRG--NVWVIGAQNAG 410 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~--~v~vvG~~NVG 410 (666)
...++|||++|.|++.|++.|.+.++... ..+.+.+...|
T Consensus 331 ---~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~ 372 (411)
T COG2262 331 ---PNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAG 372 (411)
T ss_pred ---CCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccccc
Confidence 14889999999999999999988765322 23345555655
No 62
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.02 E-value=1.3e-09 Score=121.06 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccc---cceecceecccccccccCchh--
Q 005972 200 LDGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCH---SLRNYGQVKNEVAENLIPDFD-- 273 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~---rLr~ygkv~~~~~~~~iP~~d-- 273 (666)
.+.+..+++|+||+||| ++|++.+....+++..+ +.+..+.... ..+.|.. +..|+..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~---------gtt~~~~~~~~~~~~~~~~l-------vDT~G~~~~ 234 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA---------GTTRDSIDTPFERDGQKYTL-------IDTAGIRRK 234 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC---------CceEEEEEEEEEECCeeEEE-------EECCCCCCC
Confidence 35677889999999966 55999887533332211 1111111111 0011111 1124421
Q ss_pred ------HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 274 ------FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 274 ------~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
...+...+..+ ++..+|++++|+|+.+.. ... +..++..+.. ..+|+++|+||+|+++.
T Consensus 235 ~~~~~~~e~~~~~~~~~--~~~~ad~~ilViD~~~~~--~~~--~~~i~~~~~~---------~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLK--AIERADVVLLVIDATEGI--TEQ--DLRIAGLALE---------AGRALVIVVNKWDLVDE 299 (435)
T ss_pred cchhhHHHHHHHHHHHH--HHHHCCEEEEEEeCCCCC--CHH--HHHHHHHHHH---------cCCcEEEEEECccCCCH
Confidence 22222222223 466799999999998742 221 2334343332 34689999999999843
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 348 QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.. ...+.+.+...+.......++++||++|.|+++|++.+.+.
T Consensus 300 ~~----~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 300 KT----MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred HH----HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 22 23333333222221113459999999999999999988764
No 63
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.02 E-value=8.3e-10 Score=105.62 Aligned_cols=100 Identities=20% Similarity=0.143 Sum_probs=56.0
Q ss_pred cccccCEEEEEEecCCCCC---CCcHHHHHHHHHHHHHhhhhh-hhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDG---MFPKRAAKSLFKKLEEAKDDA-KLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA 362 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~g---s~p~~i~~~I~~~L~~~~~~~-~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~ 362 (666)
.+..+|+|++|+|+.+... ..+......+...+....... ......+|+++|+||+|+..... +..|.....
T Consensus 71 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~ 146 (176)
T cd01881 71 HIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----LEEELVREL 146 (176)
T ss_pred HHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----HHHHHHHHH
Confidence 3467999999999988530 011111122222222110000 00002368999999999986543 233311111
Q ss_pred HhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.... ...++.+||+++.|+++|++.|..
T Consensus 147 ~~~~---~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 147 ALEE---GAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hcCC---CCCEEEEehhhhcCHHHHHHHHHh
Confidence 1111 235999999999999999998864
No 64
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.00 E-value=1.7e-09 Score=119.79 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=59.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+.. .. .+..++..+.. ..+|+|+|+||+||+... .....+.+.+...+.
T Consensus 251 ~~~~ad~~ilV~D~~~~~--~~--~~~~~~~~~~~---------~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 251 AIERADVVLLVLDATEGI--TE--QDLRIAGLILE---------AGKALVIVVNKWDLVKDE---KTREEFKKELRRKLP 314 (429)
T ss_pred HHHhCCEEEEEEECCCCc--cH--HHHHHHHHHHH---------cCCcEEEEEECcccCCCH---HHHHHHHHHHHHhcc
Confidence 467899999999998742 22 12233333322 346899999999998321 223333333333332
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.-....++++||++|.|+++|++.|....
T Consensus 315 ~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 315 FLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 11134599999999999999999887653
No 65
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.00 E-value=1.7e-09 Score=103.04 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. + .......+...++.. . . ...|+++|+||+|+.+.. ....+..+++...+..+
T Consensus 70 ~~~~~~~~v~vvd~~~~~-~-~~~~~~~~~~~~~~~----~-~-~~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~ 140 (167)
T cd04160 70 YYAECHAIIYVIDSTDRE-R-FEESKSALEKVLRNE----A-L-EGVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIG 140 (167)
T ss_pred HhCCCCEEEEEEECchHH-H-HHHHHHHHHHHHhCh----h-h-cCCCEEEEEEccccccCC-CHHHHHHHhcccccccc
Confidence 345789999999998743 1 111222222222110 0 1 346899999999986643 23334555433322222
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.. ...++.+||++|.|++++++.|.+
T Consensus 141 ~~-~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 141 RR-DCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CC-ceEEEEeeCCCCcCHHHHHHHHhc
Confidence 21 235899999999999999988854
No 66
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.00 E-value=4.2e-09 Score=101.45 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.+.....+. ++.... ..+|+++|+||+|+... ....+..|+ ++.+
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~--------~~~~~~-------~~~~ii~v~nK~Dl~~~--~~~~~~~~~----~~~~ 119 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA--------GLLDIG-------VSKRQIAVISKTDMPDA--DVAATRKLL----LETG 119 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH--------HHHhcc-------CCCCeEEEEEccccCcc--cHHHHHHHH----HHcC
Confidence 35679999999999875433221 111110 23579999999998542 223344443 3444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. ...++++||++|.|+++|++.|.+.+
T Consensus 120 ~--~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 120 F--EEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred C--CCCEEEEECCCccCHHHHHHHHHHhc
Confidence 2 12499999999999999999998764
No 67
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.99 E-value=2.1e-09 Score=102.52 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=55.5
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCc
Q 005972 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKL 370 (666)
Q Consensus 291 aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~ 370 (666)
+|++++|+|+.+..+. .......++..+.... ...|+++|+||+|+..... +.. .+.+.+..+
T Consensus 80 ~d~~l~v~d~~~~~~~-~~~~~~~~~~~l~~~~-------~~~pvilv~NK~Dl~~~~~----~~~-~~~~~~~~~---- 142 (168)
T cd01897 80 RAAVLFLFDPSETCGY-SLEEQLSLFEEIKPLF-------KNKPVIVVLNKIDLLTFED----LSE-IEEEEELEG---- 142 (168)
T ss_pred cCcEEEEEeCCccccc-chHHHHHHHHHHHhhc-------CcCCeEEEEEccccCchhh----HHH-HHHhhhhcc----
Confidence 5889999999886432 2122233444444311 2468999999999975433 221 122222222
Q ss_pred ceEEEEecccCcChhhHHHHHHhh
Q 005972 371 NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 371 ~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..++.+||++|.|+++|++.|.+.
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHH
Confidence 248999999999999999998764
No 68
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.99 E-value=7.9e-09 Score=99.83 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=63.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|+|+.+... . ....++..+.. ...|+++|+||+|+..... ......+++...+..+
T Consensus 82 ~~~~~d~~i~v~d~~~~~~--~--~~~~~~~~~~~---------~~~~i~iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 82 GLSVSDGAILVVDANEGVQ--P--QTREHLRIARE---------GGLPIIVAINKIDRVGEED-LEEVLREIKELLGLIG 147 (189)
T ss_pred HHHhcCEEEEEEECCCCCc--H--HHHHHHHHHHH---------CCCCeEEEEECCCCcchhc-HHHHHHHHHHHHcccc
Confidence 4457999999999987432 1 12233333332 3468999999999987433 1223334443333333
Q ss_pred C----------CCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 A----------PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~----------~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
. .....++++||++|+|+++|++.|...+++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 1 124569999999999999999999887653
No 69
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.99 E-value=2.6e-09 Score=99.92 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=61.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.... ...+...+.. ...|+++|+||+|+..... .+..+...+....+
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~----~~~~~~~~~~---------~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~ 142 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEG----DEFILELLKK---------SKTPVILVLNKIDLVKDKE---DLLPLLEKLKELGP 142 (168)
T ss_pred HHHhCCEEEEEEECCCccCch----HHHHHHHHHH---------hCCCEEEEEEchhccccHH---HHHHHHHHHHhccC
Confidence 356789999999999863221 2333344433 2358999999999984322 24555555544433
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...++.+|++++.|+++|.+.|.+.
T Consensus 143 ---~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ---FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---CCceEEEEeccCCChHHHHHHHHhh
Confidence 3458999999999999999999764
No 70
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.98 E-value=1.9e-09 Score=121.46 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=66.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++.++|++++|+|+.+.. ... +..++..+.. ..+|+|+|+||+||..... ...+. +...+.+.
T Consensus 290 ~i~~ad~vilV~Da~~~~--s~~--~~~~~~~~~~---------~~~piIiV~NK~Dl~~~~~-~~~~~---~~i~~~l~ 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPI--SEQ--DQRVLSMVIE---------AGRALVLAFNKWDLVDEDR-RYYLE---REIDRELA 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCC--CHH--HHHHHHHHHH---------cCCCEEEEEECcccCChhH-HHHHH---HHHHHhcc
Confidence 456899999999998843 221 2223333322 3468999999999985432 11111 11112222
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
...+..++++||++|.|+++|++.|.+.+..... .+ +++.+|.++..
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~-------~i-~t~~ln~~~~~ 399 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETALESWDT-------RI-PTGRLNAWLGE 399 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc-------cC-CHHHHHHHHHH
Confidence 1113458999999999999999999876532111 11 35677877754
No 71
>PRK04213 GTP-binding protein; Provisional
Probab=98.98 E-value=4.5e-09 Score=104.04 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=57.8
Q ss_pred ccccCEEEEEEecCCCCCCC-------cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMF-------PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH 360 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~-------p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~ 360 (666)
...+++|++|+|+..+.... ....+..+...+.. ...|+++|+||+|+.+.. ...+..+.
T Consensus 88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~p~iiv~NK~Dl~~~~--~~~~~~~~-- 154 (201)
T PRK04213 88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---------LGIPPIVAVNKMDKIKNR--DEVLDEIA-- 154 (201)
T ss_pred hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---------cCCCeEEEEECccccCcH--HHHHHHHH--
Confidence 45678999999987653210 01122333344332 346899999999997543 12233332
Q ss_pred HHHhCCCCC-c----ceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 361 RAKAGGAPK-L----NGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 361 ~~k~~g~~~-~----~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
+.++... + ..++++||++| |+++|++.|.+.+++
T Consensus 155 --~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 --ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred --HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 3334210 1 13899999999 999999999876543
No 72
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.98 E-value=4.7e-09 Score=103.55 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=68.3
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|.+.+.. ++..+|++++|||+.+. ..+ .....+..+.. .+.|+|+|+||+|++...
T Consensus 78 PG~~~f~~~~~~------~~~~~D~ailvVda~~g--~~~--~~~~~l~~~~~---------~~~p~ivvlNK~D~~~~~ 138 (188)
T PF00009_consen 78 PGHEDFIKEMIR------GLRQADIAILVVDANDG--IQP--QTEEHLKILRE---------LGIPIIVVLNKMDLIEKE 138 (188)
T ss_dssp SSSHHHHHHHHH------HHTTSSEEEEEEETTTB--STH--HHHHHHHHHHH---------TT-SEEEEEETCTSSHHH
T ss_pred ccccceeecccc------eecccccceeeeecccc--ccc--ccccccccccc---------cccceEEeeeeccchhhh
Confidence 765 34444433 45679999999999984 222 22334444443 235799999999998211
Q ss_pred CChHHHHHHHHHHHHhCCCCC--cceEEEEecccCcChhhHHHHHHhhcC
Q 005972 349 VSPTRLDRWVRHRAKAGGAPK--LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~--~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
....+.++...+.+..+... ...++++||.+|+|+++|++.|.+++|
T Consensus 139 -~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 139 -LEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -HHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred -HHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11223333334444555431 346999999999999999999998876
No 73
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.97 E-value=9.4e-09 Score=99.22 Aligned_cols=91 Identities=22% Similarity=0.167 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.... ... ..+ ..+.. .+.|+++|+||+|+..... ...... +.+.++
T Consensus 87 ~~~~ad~~i~v~D~~~~~~~--~~~-~~~-~~~~~---------~~~~iiiv~NK~Dl~~~~~-~~~~~~----~~~~~~ 148 (179)
T cd01890 87 SLAACEGALLLVDATQGVEA--QTL-ANF-YLALE---------NNLEIIPVINKIDLPSADP-ERVKQQ----IEDVLG 148 (179)
T ss_pred HHHhcCeEEEEEECCCCccH--hhH-HHH-HHHHH---------cCCCEEEEEECCCCCcCCH-HHHHHH----HHHHhC
Confidence 45679999999999874321 111 111 11111 3458999999999864321 111222 233444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.+ ...++.+||++|.|+++|++.|.+.++
T Consensus 149 ~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 149 LD-PSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CC-cccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 32 335899999999999999999987654
No 74
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.96 E-value=4e-09 Score=99.82 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=59.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.... ...+...+.. ..+|+++|+||+|+.+... ..+..+.+...+.++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~~~---------~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 145 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQ----DLRIAGLILE---------EGKALVIVVNKWDLVEKDS--KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchh----HHHHHHHHHh---------cCCCEEEEEeccccCCccH--HHHHHHHHHHHhhcc
Confidence 346789999999998854321 1222222221 3468999999999986531 113333333333333
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
......++++||+++.|++++++.+...
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2113459999999999999999988753
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.96 E-value=7.7e-09 Score=102.15 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHH---HHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR---HRAK 363 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~---~~~k 363 (666)
+...+|.+++|+|+.+.. .... .+ .+..... ...|+++|+||+|+.........+..+.+ ....
T Consensus 88 ~~~~~d~vi~VvD~~~~~--~~~~-~~-~~~~~~~---------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 88 GAQIIDLMLLVVDATKGI--QTQT-AE-CLVIGEI---------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHhhCCEEEEEEECCCCc--cHHH-HH-HHHHHHH---------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999998732 2211 11 1121211 23489999999999854332122222222 1111
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
..+.. ...++++||++|.|+++|+++|.+..+.
T Consensus 155 ~~~~~-~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFK-NSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcC-CCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11211 2249999999999999999999886554
No 76
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.95 E-value=1.1e-09 Score=114.58 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=73.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChh-hHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRD-EQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~-~~~ 476 (666)
+.|+++|+||||||||+|+|++..... +|+.|+||++.+...... +.++.++||||+..+... +... ...
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~-----vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~---l~~~~~~~ 72 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISI-----TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS---LNRLMMKE 72 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEee-----cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch---HHHHHHHH
Confidence 478999999999999999999875433 478999999865432111 236789999999866321 1111 111
Q ss_pred HHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
.....+..+...|.++..+..... ...+..++....++ +.+.|+++.
T Consensus 73 ~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~---ilV~NK~Dl 119 (270)
T TIGR00436 73 ARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV---VLTRNKLDN 119 (270)
T ss_pred HHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE---EEEEECeeC
Confidence 223456778889998876543322 22233444444454 345667665
No 77
>PRK11058 GTPase HflX; Provisional
Probab=98.95 E-value=2.8e-09 Score=118.63 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=56.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ... ...+...|..... ...|+++|+||+|+.+... ..+. . ...+.
T Consensus 274 ~~~ADlIL~VvDaS~~~~--~e~-l~~v~~iL~el~~------~~~pvIiV~NKiDL~~~~~--~~~~----~--~~~~~ 336 (426)
T PRK11058 274 TRQATLLLHVVDAADVRV--QEN-IEAVNTVLEEIDA------HEIPTLLVMNKIDMLDDFE--PRID----R--DEENK 336 (426)
T ss_pred hhcCCEEEEEEeCCCccH--HHH-HHHHHHHHHHhcc------CCCCEEEEEEcccCCCchh--HHHH----H--HhcCC
Confidence 568999999999988531 111 1112233333211 3468999999999975421 1111 1 12232
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
..++++||++|.|+++|++.|.+.+.
T Consensus 337 ---~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 337 ---PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 22578999999999999999987654
No 78
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.91 E-value=3.8e-09 Score=124.76 Aligned_cols=93 Identities=15% Similarity=0.041 Sum_probs=59.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+.. ... +..++..+.. .++|+|+|+||+||.+... ...+.+.+...+.
T Consensus 529 ~i~~advvilViDat~~~--s~~--~~~i~~~~~~---------~~~piIiV~NK~DL~~~~~----~~~~~~~~~~~l~ 591 (712)
T PRK09518 529 AIERSELALFLFDASQPI--SEQ--DLKVMSMAVD---------AGRALVLVFNKWDLMDEFR----RQRLERLWKTEFD 591 (712)
T ss_pred HhhcCCEEEEEEECCCCC--CHH--HHHHHHHHHH---------cCCCEEEEEEchhcCChhH----HHHHHHHHHHhcc
Confidence 457799999999998743 221 2223333322 3468999999999986432 1111111222221
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
...+..++++||++|.|+++|++.+.+.++
T Consensus 592 ~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 592 RVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 112456899999999999999999987654
No 79
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.89 E-value=2.3e-08 Score=100.54 Aligned_cols=89 Identities=16% Similarity=0.029 Sum_probs=53.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC-hHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-PTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|+|+.+.. .. ....++..+... +.+++|+|+||+|+...... ...+..-++.+.+.+
T Consensus 97 ~~~~ad~~llVvD~~~~~--~~--~~~~~~~~~~~~--------~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~ 164 (208)
T cd04166 97 GASTADLAILLVDARKGV--LE--QTRRHSYILSLL--------GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKL 164 (208)
T ss_pred hhhhCCEEEEEEECCCCc--cH--hHHHHHHHHHHc--------CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHc
Confidence 456799999999998742 11 122222333221 23467889999999753221 111222333344556
Q ss_pred CCCCcceEEEEecccCcChhhHH
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl 388 (666)
+.+ ...++++||++|.|+.+..
T Consensus 165 ~~~-~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 165 GIE-DITFIPISALDGDNVVSRS 186 (208)
T ss_pred CCC-CceEEEEeCCCCCCCccCC
Confidence 642 2458999999999998654
No 80
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.89 E-value=2.1e-08 Score=100.30 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=54.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+... ..+. .+.++..+... +.+++|+|+||+|++......+.+...++.+.+.+|
T Consensus 85 ~~~~~D~~ilVvda~~g--~~~~--~~~~~~~~~~~--------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 85 GAAQMDGAILVVSATDG--PMPQ--TREHLLLARQV--------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred HhhhCCEEEEEEECCCC--CcHH--HHHHHHHHHHc--------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999873 2222 23344444432 233478999999998533222334445555555566
Q ss_pred CC-CcceEEEEecccCcChh
Q 005972 367 AP-KLNGVYLVSARKDLGVR 385 (666)
Q Consensus 367 ~~-~~~~V~~VSAkkg~Gve 385 (666)
+. ....++++||++|.++.
T Consensus 153 ~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 153 FDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccccCCeEEEeeCccccCCC
Confidence 42 12459999999998853
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.88 E-value=1.3e-08 Score=95.68 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=57.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..+++.+++|+|+.+.. ++ ..+.. ++..+.+.. .....|+++|+||+|+.........+..+ .+..+.
T Consensus 70 ~~~~~~~i~v~~~~~~~-s~-~~~~~-~~~~i~~~~-----~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 137 (162)
T cd04138 70 MRTGEGFLCVFAINSRK-SF-EDIHT-YREQIKRVK-----DSDDVPMVLVGNKCDLAARTVSSRQGQDL----AKSYGI 137 (162)
T ss_pred HhcCCEEEEEEECCCHH-HH-HHHHH-HHHHHHHhc-----CCCCCCEEEEEECcccccceecHHHHHHH----HHHhCC
Confidence 45688999999988732 11 12222 222222211 11346899999999998754433333333 234453
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||++|.|++++++.|.+.
T Consensus 138 ----~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 138 ----PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ----eEEEecCCCCCCHHHHHHHHHHH
Confidence 38899999999999999988653
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.88 E-value=1.6e-08 Score=95.71 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=56.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ...+.. ++..+... .....|+++|+||+|+...... .......+.+..+.
T Consensus 70 ~~~~~~ii~v~d~~~~~s--~~~~~~-~~~~~~~~------~~~~~~iilv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 137 (161)
T cd01861 70 IRDSSVAVVVYDITNRQS--FDNTDK-WIDDVRDE------RGNDVIIVLVGNKTDLSDKRQV---STEEGEKKAKELNA 137 (161)
T ss_pred hccCCEEEEEEECcCHHH--HHHHHH-HHHHHHHh------CCCCCEEEEEEEChhccccCcc---CHHHHHHHHHHhCC
Confidence 457899999999987431 222222 22222221 1123689999999999643321 11222223334443
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||+++.|+++|++.|.+.
T Consensus 138 ----~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 138 ----MFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHh
Confidence 38899999999999999998764
No 83
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.86 E-value=3.6e-08 Score=94.82 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. ++ ..+. .++..+++.. ....|+++|+||+|+..+. ........+ ....
T Consensus 73 ~~~~~d~il~v~d~~~~~-s~-~~~~-~~~~~~~~~~------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (168)
T cd01866 73 YYRGAAGALLVYDITRRE-TF-NHLT-SWLEDARQHS------NSNMTIMLIGNKCDLESRREVSYEEGEAF----AKEH 139 (168)
T ss_pred HhccCCEEEEEEECCCHH-HH-HHHH-HHHHHHHHhC------CCCCcEEEEEECcccccccCCCHHHHHHH----HHHc
Confidence 345789999999998732 11 1121 2222222211 1346899999999998433 232333333 3344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||+++.|+++++..+.+.
T Consensus 140 ~~----~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 140 GL----IFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38899999999999999887654
No 84
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.86 E-value=5e-09 Score=117.45 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=85.1
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccc---ccCchh-HH
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD-FD 275 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP~~d-~~ 275 (666)
.|+..+++|+||+||| ++|++.+.+.++++..+.+ ++......+......+ ..|++. +.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt----------------T~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGT----------------TRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc----------------ccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 5788899999999966 5599998775544443322 1111111111111111 124432 11
Q ss_pred HHH----HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh
Q 005972 276 RVI----ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 276 ~~L----~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
..+ .+.... ...++|++++|+|+.++... . ...+ +... ...|+++|+||+||.+...
T Consensus 278 ~~ie~~gi~~~~~--~~~~aD~il~VvD~s~~~s~--~--~~~~---l~~~--------~~~piiiV~NK~DL~~~~~-- 338 (449)
T PRK05291 278 DEVEKIGIERSRE--AIEEADLVLLVLDASEPLTE--E--DDEI---LEEL--------KDKPVIVVLNKADLTGEID-- 338 (449)
T ss_pred cHHHHHHHHHHHH--HHHhCCEEEEEecCCCCCCh--h--HHHH---HHhc--------CCCCcEEEEEhhhccccch--
Confidence 111 111222 45789999999999875421 1 1112 1111 3468999999999976432
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.. ...+ ..++.+||++|.|+++|++.|.+.+
T Consensus 339 --~~-------~~~~----~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 --LE-------EENG----KPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred --hh-------hccC----CceEEEEeeCCCCHHHHHHHHHHHH
Confidence 11 1112 2388999999999999999998764
No 85
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.86 E-value=4.7e-08 Score=90.69 Aligned_cols=153 Identities=19% Similarity=0.171 Sum_probs=84.1
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHHhcC
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMK 284 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~ 284 (666)
+.+|.||+|||+| |++...+.+.....- ....+..+.....+. ...- .-+..|+......+...
T Consensus 4 ~~~G~~~~GKStl~~~l~~~~~~~~~~~t---------~~~~~~~~~~~~~~~-~~~~--~l~D~~g~~~~~~~~~~--- 68 (159)
T cd00154 4 VLIGDSGVGKTSLLLRFVDGKFDENYKST---------IGVDFKSKTIEIDGK-TVKL--QIWDTAGQERFRSITPS--- 68 (159)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCccCCc---------eeeeeEEEEEEECCE-EEEE--EEEecCChHHHHHHHHH---
Confidence 4689999996655 988877754331110 001111111111100 0000 00123655433333333
Q ss_pred cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC-CCCCChHHHHHHHHHHHH
Q 005972 285 PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL-PSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 285 P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL-pk~~~~~~L~~wl~~~~k 363 (666)
...++|++++|+|+.+... ...+. .++..+.... ....|+++|+||+|+. +.......+..|. .
T Consensus 69 --~~~~~d~ii~v~d~~~~~~--~~~~~-~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~ 133 (159)
T cd00154 69 --YYRGAHGAILVYDITNRES--FENLD-KWLKELKEYA------PENIPIILVGNKIDLEDQRQVSTEEAQQFA----K 133 (159)
T ss_pred --HhcCCCEEEEEEECCCHHH--HHHHH-HHHHHHHHhC------CCCCcEEEEEEcccccccccccHHHHHHHH----H
Confidence 4457999999999988431 11222 2333333211 0246899999999997 4444444444443 3
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHH
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
..+. .++.+||+++.|++++++.|.
T Consensus 134 ~~~~----~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 134 ENGL----LFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HcCC----eEEEEecCCCCCHHHHHHHHh
Confidence 3333 499999999999999998875
No 86
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.86 E-value=3.2e-08 Score=93.94 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=55.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. + .....+.+...++... . ...|+++|+||+|+..... ...+... +.....
T Consensus 63 ~~~~~~~ii~v~d~~~~~-~-~~~~~~~~~~~~~~~~----~--~~~piiiv~nK~Dl~~~~~-~~~i~~~---~~~~~~ 130 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRD-R-LGTAKEELHAMLEEEE----L--KGAVLLVFANKQDMPGALS-EAEISEK---LGLSEL 130 (158)
T ss_pred HhcCCCEEEEEEECCCHH-H-HHHHHHHHHHHHhchh----h--cCCcEEEEEeCCCCCCCCC-HHHHHHH---hCcccc
Confidence 356799999999998742 1 1112233333332211 0 2468999999999975432 1112111 100000
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
......++++||++|.|+++|++.|.+
T Consensus 131 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 131 KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 000125999999999999999998853
No 87
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.85 E-value=4.9e-08 Score=92.80 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhC-
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG- 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~- 365 (666)
....+|++++|+|+.+.. ... ....+..+.. ...|+++|+||+|+..... ..+...+..+....
T Consensus 70 ~~~~~d~il~v~d~~~~~--~~~--~~~~~~~~~~---------~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~ 134 (168)
T cd01887 70 GASLTDIAILVVAADDGV--MPQ--TIEAIKLAKA---------ANVPFIVALNKIDKPNANP--ERVKNELSELGLQGE 134 (168)
T ss_pred HHhhcCEEEEEEECCCCc--cHH--HHHHHHHHHH---------cCCCEEEEEEceecccccH--HHHHHHHHHhhcccc
Confidence 345789999999998743 111 1122233332 3458999999999874321 12222222211110
Q ss_pred -CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 -GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 -g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.......++.+||++|.|+++|++.|.+.
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 135 DEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred ccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 00012358999999999999999999765
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.85 E-value=1.8e-08 Score=95.23 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=85.4
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc-cccCchhHHHHHHHHhc
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NLIPDFDFDRVIATRLM 283 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~-~~iP~~d~~~~L~~~l~ 283 (666)
+.+|+||+|||+| +++.+.+....... ......+.......+.... .+ +.+|+......+...
T Consensus 4 ~v~G~~~~GKTtli~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~l~D~~G~~~~~~~~~~-- 68 (164)
T smart00175 4 ILIGDSGVGKSSLLSRFTDGKFSEQYKS-----------TIGVDFKTKTIEVDGKRVK--LQIWDTAGQERFRSITSS-- 68 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCC-----------ceeeEEEEEEEEECCEEEE--EEEEECCChHHHHHHHHH--
Confidence 4689999997765 98887764211111 1111111122221121100 01 123554322233322
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHH
Q 005972 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRA 362 (666)
Q Consensus 284 ~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~ 362 (666)
....+|++++|+|+.++.. . ..+..++..... ......|+++|+||+|+.+.. ...+....|.
T Consensus 69 ---~~~~~d~~ilv~d~~~~~s-----~-~~~~~~l~~~~~---~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~---- 132 (164)
T smart00175 69 ---YYRGAVGALLVYDITNRES-----F-ENLKNWLKELRE---YADPNVVIMLVGNKSDLEDQRQVSREEAEAFA---- 132 (164)
T ss_pred ---HhCCCCEEEEEEECCCHHH-----H-HHHHHHHHHHHH---hCCCCCeEEEEEEchhcccccCCCHHHHHHHH----
Confidence 3457999999999987431 1 122223322110 011346999999999987633 3334444443
Q ss_pred HhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+..+. .++.+||++|.|++++++.|.+.+
T Consensus 133 ~~~~~----~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 133 EEHGL----PFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred HHcCC----eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34453 289999999999999999987653
No 89
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=7.3e-09 Score=109.40 Aligned_cols=131 Identities=22% Similarity=0.211 Sum_probs=81.8
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.-.++.|.|+||||||||+++|.+.. +.+.++|-||+.+.-.....+ ..+++|||||+....... .++-++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak------pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E--rN~IE~ 238 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK------PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE--RNEIER 238 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC------CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHH--hcHHHH
Confidence 34589999999999999999998643 345689999998754322222 278999999999766543 355566
Q ss_pred HHHHhhhhc-CceeEEecCCCccccc--ceEEE-eecccc-cceEEEEEecCCcccccc-cccccHHHH
Q 005972 476 KMVEIRKEL-QPRTYRVKARQAVHVG--GLMRL-DLDQAS-VETIYVTVWASPNVSLHL-GKIENADEI 538 (666)
Q Consensus 476 ~~~~~~kel-~~~~f~l~~~~~l~lg--gl~rl-d~l~~~-~~~v~~~v~~s~~l~~h~-tk~e~a~e~ 538 (666)
+.+...+.+ ..+.|.+++....... ....| +-++.. ..++ +-+.||++++. .+.+++...
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~---v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPI---VVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCe---EEEEecccccchhHHHHHHHH
Confidence 666666666 4578888876433222 22211 111111 1232 33568888763 344555444
No 90
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.85 E-value=2.1e-08 Score=95.51 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=82.6
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc-cccCchhHHHHHHHH
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NLIPDFDFDRVIATR 281 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~-~~iP~~d~~~~L~~~ 281 (666)
-.+++|+||+|||+| +++.+.+.......... ...... .....+... ..+ +..|+......+...
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~---~~~~~~~~~--~~~l~D~~g~~~~~~~~~~ 71 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG--------VEFATR---SIQIDGKTI--KAQIWDTAGQERYRAITSA 71 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eEEEEE---EEEECCEEE--EEEEEeCCChHHHHHHHHH
Confidence 346799999997755 98887663321111100 000110 111111100 001 113554433333332
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRH 360 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~ 360 (666)
....++.+++|+|+.+... + ..+. .++..+... .....|+++|+||+|+.... ........+
T Consensus 72 -----~~~~~~~~i~v~d~~~~~s-~-~~~~-~~~~~~~~~------~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~--- 134 (165)
T cd01868 72 -----YYRGAVGALLVYDITKKQT-F-ENVE-RWLKELRDH------ADSNIVIMLVGNKSDLRHLRAVPTEEAKAF--- 134 (165)
T ss_pred -----HHCCCCEEEEEEECcCHHH-H-HHHH-HHHHHHHHh------CCCCCeEEEEEECccccccccCCHHHHHHH---
Confidence 3456899999999987431 1 1122 122222221 11246899999999997533 222223333
Q ss_pred HHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
....+. .++.+||++|.|+++|++.|.+.
T Consensus 135 -~~~~~~----~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 135 -AEKNGL----SFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHcCC----EEEEEECCCCCCHHHHHHHHHHH
Confidence 233342 38899999999999999988653
No 91
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.84 E-value=2.4e-08 Score=94.54 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=83.4
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc-cccCchhHHHHHHHH
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NLIPDFDFDRVIATR 281 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~-~~iP~~d~~~~L~~~ 281 (666)
-.+++|.||+|||+| +++.+.... +.... .....+...|+- .+... ..+ +..|+..-...+...
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~-------t~~~~~~~~~~~---~~~~~--~~~i~Dt~G~~~~~~~~~~ 69 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFV--TDYDP-------TIEDSYTKQCEI---DGQWA--ILDILDTAGQEEFSAMREQ 69 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC--cccCC-------CccceEEEEEEE---CCEEE--EEEEEECCCCcchhHHHHH
Confidence 346799999997765 888765521 11111 011112223321 11100 000 123554322333333
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRH 360 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~ 360 (666)
...++|.+++|+|+.+... + ..+.. ++..+.+.. .....|+++|+||+|+..... .......
T Consensus 70 -----~~~~~~~~ilv~d~~~~~s-~-~~~~~-~~~~~~~~~-----~~~~~piiiv~NK~Dl~~~~~~~~~~~~~---- 132 (164)
T cd04145 70 -----YMRTGEGFLLVFSVTDRGS-F-EEVDK-FHTQILRVK-----DRDEFPMILVGNKADLEHQRKVSREEGQE---- 132 (164)
T ss_pred -----HHhhCCEEEEEEECCCHHH-H-HHHHH-HHHHHHHHh-----CCCCCCEEEEeeCccccccceecHHHHHH----
Confidence 3456899999999987431 1 12222 222222211 113468999999999975432 2222223
Q ss_pred HHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+..+. .++.+||++|.|++++++.|...
T Consensus 133 ~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 133 LARKLKI----PYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred HHHHcCC----cEEEeeCCCCCCHHHHHHHHHHh
Confidence 3344453 38999999999999999988753
No 92
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.84 E-value=3.5e-08 Score=97.01 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=84.3
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHH
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATR 281 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~ 281 (666)
+-.+++|.||+|||+| +++.+.+.+... .+ . .... ... .++.+.- .-+.+|+..-.+.+...
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~~---~t------~-~~~~----~~~-~~~~~~~--~~~D~~G~~~~~~~~~~ 80 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQ---PT------Q-HPTS----EEL-AIGNIKF--TTFDLGGHQQARRLWKD 80 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccC---Cc------c-ccce----EEE-EECCEEE--EEEECCCCHHHHHHHHH
Confidence 5567799999997755 998887643210 00 0 0000 000 0111100 00123665433333332
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR 361 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~ 361 (666)
...++|.+++|+|+.++.. + ......+...+... .. ...|+++|+||+|+.. ......+..++.-.
T Consensus 81 -----~~~~ad~ii~vvD~~~~~~-~-~~~~~~l~~l~~~~----~~--~~~piliv~NK~Dl~~-~~~~~~i~~~l~l~ 146 (184)
T smart00178 81 -----YFPEVNGIVYLVDAYDKER-F-AESKRELDALLSDE----EL--ATVPFLILGNKIDAPY-AASEDELRYALGLT 146 (184)
T ss_pred -----HhCCCCEEEEEEECCcHHH-H-HHHHHHHHHHHcCh----hh--cCCCEEEEEeCccccC-CCCHHHHHHHcCCC
Confidence 4567999999999987431 1 11222222222110 01 3468999999999853 23333344433110
Q ss_pred HHh-----CCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 362 AKA-----GGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 362 ~k~-----~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
... .+. +...++++||++|.|++++++.|.+
T Consensus 147 ~~~~~~~~~~~-~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 147 NTTGSKGKVGV-RPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccccccCC-ceeEEEEeecccCCChHHHHHHHHh
Confidence 000 011 2456999999999999999999865
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.83 E-value=3.4e-08 Score=92.82 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=84.7
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHHhc
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLM 283 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~ 283 (666)
.+++|++|+|||+| |++...+....... .....+..++.....+ .+.- .-+..|+......+...
T Consensus 3 i~i~G~~~~GKStli~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~--~~~D~~g~~~~~~~~~~-- 68 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNEKHES---------TTQASFFQKTVNIGGK-RIDL--AIWDTAGQERYHALGPI-- 68 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCcCC---------ccceeEEEEEEEECCE-EEEE--EEEECCchHHHHHhhHH--
Confidence 45799999997765 98887764321110 0112222222222111 1100 00113553333333332
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHH
Q 005972 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRA 362 (666)
Q Consensus 284 ~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~ 362 (666)
...++|.+++|+|+.+... .... ..+++.+.... . ...|+++|+||+|+..... ....+..+ .
T Consensus 69 ---~~~~~~~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~-~~~piiiv~nK~D~~~~~~~~~~~~~~~----~ 132 (162)
T cd04123 69 ---YYRDADGAILVYDITDADS--FQKV-KKWIKELKQMR-----G-NNISLVIVGNKIDLERQRVVSKSEAEEY----A 132 (162)
T ss_pred ---HhccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhC-----C-CCCeEEEEEECcccccccCCCHHHHHHH----H
Confidence 3457899999999987431 1111 22223333321 1 2468999999999985332 22223332 3
Q ss_pred HhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+..+. .++.+||+++.|++++++.|.+.
T Consensus 133 ~~~~~----~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 133 KSVGA----KHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHcCC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 34443 38899999999999999998653
No 94
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.83 E-value=4e-08 Score=93.85 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.++.. + .. ...++..+... .....|+++|+||+|+..... ....... +.+..
T Consensus 72 ~~~~~d~~llv~d~~~~~s-~-~~-~~~~~~~i~~~------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~ 138 (165)
T cd01864 72 YYRSANGAIIAYDITRRSS-F-ES-VPHWIEEVEKY------GASNVVLLLIGNKCDLEEQREVLFEEACT----LAEKN 138 (165)
T ss_pred HhccCCEEEEEEECcCHHH-H-Hh-HHHHHHHHHHh------CCCCCcEEEEEECcccccccccCHHHHHH----HHHHc
Confidence 3457899999999987431 1 11 12222333221 113468999999999975432 2222222 23344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+ ...++.+||++|.|++++++.|.+.
T Consensus 139 ~---~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 139 G---MLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred C---CcEEEEEECCCCCCHHHHHHHHHHh
Confidence 4 3358999999999999999988753
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.82 E-value=3.6e-08 Score=94.46 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=58.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+.. . .+.+..++..... ......|+++|+||+||.+... .......+ .+.+
T Consensus 70 ~~~~~~~~l~v~d~~~~~-----s-~~~~~~~~~~i~~---~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~ 136 (165)
T cd01865 70 YYRGAMGFILMYDITNEE-----S-FNAVQDWSTQIKT---YSWDNAQVILVGNKCDMEDERVVSSERGRQL----ADQL 136 (165)
T ss_pred HccCCcEEEEEEECCCHH-----H-HHHHHHHHHHHHH---hCCCCCCEEEEEECcccCcccccCHHHHHHH----HHHc
Confidence 456799999999998742 1 1223333333211 1113468999999999976432 22222332 3445
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+. .++.+||++|.|+++|++.|.+.+
T Consensus 137 ~~----~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 137 GF----EFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHHHH
Confidence 54 389999999999999999987643
No 96
>PRK15494 era GTPase Era; Provisional
Probab=98.82 E-value=5.8e-09 Score=112.89 Aligned_cols=133 Identities=19% Similarity=0.160 Sum_probs=80.8
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChh-hH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRD-EQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~-~~ 475 (666)
.++|.++|.+|||||||+|+|++.... .+++.|+||++.+...... +.++.++||||+..+... +... ..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~-----ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~---l~~~~~r 123 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLS-----IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS---LEKAMVR 123 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCcee-----eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc---HHHHHHH
Confidence 358999999999999999999976543 2468899999865432223 346899999999765431 2111 11
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHh
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKN 541 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k 541 (666)
.........+...|.++...++.-....+++.++....+++ .+.|++++.......+.++++.
T Consensus 124 ~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I---lViNKiDl~~~~~~~~~~~l~~ 186 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI---FLLNKIDIESKYLNDIKAFLTE 186 (339)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE---EEEEhhcCccccHHHHHHHHHh
Confidence 11123467788889888766543333334444443333432 3457877643223334444443
No 97
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.82 E-value=7.7e-09 Score=109.67 Aligned_cols=99 Identities=27% Similarity=0.302 Sum_probs=70.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++.+-++++|||+...++..|.+....|...|..+.. ++ ..+|.++|+||+|+.-... .++...+++.+..+
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--~L--~~K~~ivv~NKiD~~~~~e---~~~~~~~~l~~~~~ 306 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--KL--AEKPRIVVLNKIDLPLDEE---ELEELKKALAEALG 306 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH--Hh--ccCceEEEEeccCCCcCHH---HHHHHHHHHHHhcC
Confidence 45668899999999988777777777778888877632 23 2467899999999654332 24555445544444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.. . .++|||.++.|+++|+..+.+++
T Consensus 307 ~~--~-~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 307 WE--V-FYLISALTREGLDELLRALAELL 332 (369)
T ss_pred CC--c-ceeeehhcccCHHHHHHHHHHHH
Confidence 31 1 22399999999999999998753
No 98
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.81 E-value=9.4e-08 Score=90.55 Aligned_cols=92 Identities=27% Similarity=0.307 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... + .....++..+.... ....|+++|+||+|+.+. ......+..+ .+..
T Consensus 70 ~~~~~~~~i~v~d~~~~~s-~--~~~~~~~~~~~~~~------~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~~~ 136 (163)
T cd01860 70 YYRGAAAAIVVYDITSEES-F--EKAKSWVKELQRNA------SPNIIIALVGNKADLESKRQVSTEEAQEY----ADEN 136 (163)
T ss_pred HhccCCEEEEEEECcCHHH-H--HHHHHHHHHHHHhC------CCCCeEEEEEECccccccCcCCHHHHHHH----HHHc
Confidence 3457899999999987431 1 11222333333221 134579999999998743 2232333333 2344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+. .++.+||++|.|+++|++.|.+.+
T Consensus 137 ~~----~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 137 GL----LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHHHh
Confidence 43 389999999999999999987653
No 99
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.81 E-value=7.4e-09 Score=102.91 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|++||.||||||||+|+|++.....+. ...+|+|+++......+. ..+.+|||||+.........+ ...+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~----~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~---~~~i~ 74 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK----LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQL---SKEIV 74 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc----cCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHH---HHHHH
Confidence 6899999999999999999987655332 235788888766544443 468999999999765321111 11111
Q ss_pred H----hhhhcCceeEEecCCCcccccceEEEeecc
Q 005972 479 E----IRKELQPRTYRVKARQAVHVGGLMRLDLDQ 509 (666)
Q Consensus 479 ~----~~kel~~~~f~l~~~~~l~lggl~rld~l~ 509 (666)
. ....++...|.++.++ +...+...++.++
T Consensus 75 ~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~ 108 (196)
T cd01852 75 RCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQ 108 (196)
T ss_pred HHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHH
Confidence 1 1234556677777665 5444555555543
No 100
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.80 E-value=9.4e-08 Score=90.38 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=57.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.+... + ..+ ..++..+.+... ........|+++|+||+|+.+. .........|. +..+
T Consensus 70 ~~~~d~~ilv~D~~~~~s-~-~~~-~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 141 (168)
T cd04119 70 YKDTQGVLLVYDVTDRQS-F-EAL-DSWLKEMKQEGG-PHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA----ESKG 141 (168)
T ss_pred hccCCEEEEEEECCCHHH-H-HhH-HHHHHHHHHhcc-ccccCCCceEEEEEEchhcccccccCHHHHHHHH----HHcC
Confidence 457899999999987431 1 111 122222222110 0000024689999999999743 33333344443 3444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 142 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 142 F----KYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred C----eEEEEECCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988753
No 101
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.80 E-value=3.1e-08 Score=94.11 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=56.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+... + ..+. .+...+.+.. .....|+++|+||+|+.+... .......+. +..+
T Consensus 69 ~~~~~~~i~v~d~~~~~s-~-~~~~-~~~~~i~~~~-----~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~----~~~~ 136 (164)
T smart00173 69 MRTGEGFLLVYSITDRQS-F-EEIK-KFREQILRVK-----DRDDVPIVLVGNKCDLESERVVSTEEGKELA----RQWG 136 (164)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHhc-----CCCCCCEEEEEECccccccceEcHHHHHHHH----HHcC
Confidence 456899999999987431 1 1111 1122222211 112468999999999976432 222333332 3344
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 137 ~----~~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 137 C----PFLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred C----EEEEeecCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998764
No 102
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.80 E-value=1.9e-08 Score=119.28 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=58.8
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|+|++|+|+.+... . ..+...+.+ ...|+++|+||+|+..+... ..-.+.+.+.+|.+
T Consensus 84 ~~aD~vI~VvDat~ler----~--l~l~~ql~e---------~giPvIvVlNK~Dl~~~~~i----~id~~~L~~~LG~p 144 (772)
T PRK09554 84 GDADLLINVVDASNLER----N--LYLTLQLLE---------LGIPCIVALNMLDIAEKQNI----RIDIDALSARLGCP 144 (772)
T ss_pred cCCCEEEEEecCCcchh----h--HHHHHHHHH---------cCCCEEEEEEchhhhhccCc----HHHHHHHHHHhCCC
Confidence 57899999999987431 1 123333333 24689999999999754432 22233344567764
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
++++||++|.|+++|++.|.+..
T Consensus 145 ----VvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 145 ----VIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ----EEEEEeecCCCHHHHHHHHHHhh
Confidence 99999999999999999998754
No 103
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.80 E-value=2.8e-08 Score=98.70 Aligned_cols=86 Identities=31% Similarity=0.356 Sum_probs=56.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++..... ...+.+.+..... ..+|+++|+||+|+.+... ...+ ....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~---~~~~~~~l~~~~~------~~~~viiV~NK~Dl~~~~~----~~~~----~~~~-- 178 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQ---IETVEKVLKELGA------EDIPMILVLNKIDLLDDEE----LEER----LEAG-- 178 (204)
T ss_pred HhcCCeEEEEEECCCCChhhH---HHHHHHHHHHcCc------CCCCEEEEEEccccCChHH----HHHH----hhcC--
Confidence 457899999999998542211 1222333433211 2468999999999986543 2211 1222
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...++.+||+++.|++++++.|...
T Consensus 179 --~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 179 --RPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred --CCceEEEEcCCCCCHHHHHHHHHhh
Confidence 2348999999999999999988753
No 104
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.80 E-value=2e-08 Score=93.77 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=54.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+...... ..+ +... ..+|+++|+||+|+.+.... .....+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~----~~~---~~~~--------~~~~vi~v~nK~D~~~~~~~----------~~~~~~ 131 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEED----LEI---LELP--------ADKPIIVVLNKSDLLPDSEL----------LSLLAG 131 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHH----HHH---HHhh--------cCCCEEEEEEchhcCCcccc----------ccccCC
Confidence 3467999999999997543221 111 1111 34689999999999875541 111222
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..++.+||+++.|+++|++.|.+.
T Consensus 132 ----~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 132 ----KPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred ----CceEEEECCCCCCHHHHHHHHHHh
Confidence 248999999999999999998764
No 105
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.80 E-value=6e-08 Score=90.16 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=54.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHH-HhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA-KAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~-k~~ 365 (666)
...++|++++|+|+.++.. + ......+...+.... ....|+++|+||+|+..... ...+..... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~-~-~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~ 131 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTA-L-EAAKNELHDLLEKPS------LEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSI 131 (159)
T ss_pred HHhcCCEEEEEEECCCHHH-H-HHHHHHHHHHHcChh------hcCCCEEEEEeCccccCCcC----HHHHHHHhCcccc
Confidence 3457899999999987431 1 111122222221100 02458999999999876543 222221111 011
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. .....++.+||++|.|++++++.|.+
T Consensus 132 ~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 132 T-DREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred c-CCceEEEEEEeccCCChHHHHHHHhh
Confidence 1 01235789999999999999998864
No 106
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.79 E-value=1e-07 Score=90.90 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-CCCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... + ... ..+...+..... .....+.|+++|+||+|+.. .......+..|. +..
T Consensus 69 ~~~~~d~~i~v~d~~~~~~-~-~~~-~~~~~~~~~~~~--~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 139 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKS-F-ESL-DSWRDEFLIQAS--PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC----QSN 139 (172)
T ss_pred HhcCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhcC--ccCCCCceEEEEEECcccccccccCHHHHHHHH----HHc
Confidence 3457999999999987431 1 111 111121111100 00012468999999999984 333334444443 344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+ ...++.+||++|.|++++++.|.+.
T Consensus 140 ~---~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 140 G---NIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred C---CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4 2359999999999999999988764
No 107
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.79 E-value=6.6e-08 Score=97.48 Aligned_cols=93 Identities=27% Similarity=0.333 Sum_probs=57.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-CCCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~g 366 (666)
..++|+||+|+|+.++.. + ..+ ..+...+.+... .....+|+++|+||+||.. ..........| .+..+
T Consensus 71 ~~~ad~iilV~D~t~~~s-~-~~~-~~w~~~l~~~~~---~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~ 140 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQS-F-ENL-EDWYSMVRKVLK---SSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANG 140 (215)
T ss_pred hhcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhcc---ccCCCceEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 457999999999988531 1 111 222333333211 0012357899999999974 33333333433 33445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ..+.+||++|.|+++|++.|...
T Consensus 141 ~----~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 141 M----ESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred C----EEEEEECCCCCCHHHHHHHHHHH
Confidence 3 37889999999999999998764
No 108
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.78 E-value=1.2e-08 Score=112.49 Aligned_cols=86 Identities=22% Similarity=0.144 Sum_probs=62.3
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.|++||+||||||||+|+|++.. +.++++|+||+..+......+ ..+.++||||+..+......| ...+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k------~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~L---g~~~ 231 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK------PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGL---GIRF 231 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc------ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhH---HHHH
Confidence 79999999999999999999754 235799999999766443333 248999999998655322112 3344
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
+......+...|+++..
T Consensus 232 l~~i~radvlL~VVD~s 248 (390)
T PRK12298 232 LKHLERCRVLLHLIDIA 248 (390)
T ss_pred HHHHHhCCEEEEEeccC
Confidence 55567778888888754
No 109
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.78 E-value=5.8e-08 Score=91.72 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=53.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|.+++|+|+.+... + ......+...+.. ........|+++|+||+|+..... ...+...+. + ....
T Consensus 65 ~~~~~d~ii~v~D~~~~~~-~-~~~~~~~~~~~~~----~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~-~-~~~~ 135 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLR-L-VVVKDELELLLNH----PDIKHRRVPILFFANKMDLPDALT-AVKITQLLG-L-ENIK 135 (162)
T ss_pred HHccCCEEEEEEeCCcHHH-H-HHHHHHHHHHHcC----cccccCCCCEEEEEeCccccCCCC-HHHHHHHhC-C-cccc
Confidence 3457999999999987431 1 1111122111111 011113468999999999975432 111221110 0 0001
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
...-.++.+||++|.|++++++.|.+
T Consensus 136 -~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 136 -DKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -CceEEEEEeeCCCCCchHHHHHHHhc
Confidence 01124788999999999999998853
No 110
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.78 E-value=3e-08 Score=96.82 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=48.9
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..++.+++|+|+..... ..+..++..+.. ..+|+++|+||+|+.+.......+..+ +......+.
T Consensus 99 ~~~~~ii~vvd~~~~~~----~~~~~~~~~~~~---------~~~pviiv~nK~D~~~~~~~~~~~~~i-~~~l~~~~~- 163 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLK----ELDLEMLEWLRE---------RGIPVLIVLTKADKLKKSELNKQLKKI-KKALKKDAD- 163 (179)
T ss_pred hhhcEEEEEecCCCCCC----HHHHHHHHHHHH---------cCCCEEEEEECcccCCHHHHHHHHHHH-HHHHhhccC-
Confidence 35789999999986321 222334444433 346899999999998543222222222 222233331
Q ss_pred CcceEEEEecccCcChh
Q 005972 369 KLNGVYLVSARKDLGVR 385 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gve 385 (666)
...++++||++|.|++
T Consensus 164 -~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 -DPSVQLFSSLKKTGID 179 (179)
T ss_pred -CCceEEEECCCCCCCC
Confidence 1259999999999974
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.77 E-value=3.9e-08 Score=95.51 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=54.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH-HHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH-RAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~-~~k~~ 365 (666)
....+|++++|+|+.+... + ......+...+... . . ...|+++|+||+|+.... ....+...+.. ..+..
T Consensus 79 ~~~~~d~vi~V~D~s~~~~-~-~~~~~~l~~~~~~~----~-~-~~~p~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~ 149 (174)
T cd04153 79 YYTNTDAVILVIDSTDRER-L-PLTKEELYKMLAHE----D-L-RKAVLLVLANKQDLKGAM-TPAEISESLGLTSIRDH 149 (174)
T ss_pred HhhcCCEEEEEEECCCHHH-H-HHHHHHHHHHHhch----h-h-cCCCEEEEEECCCCCCCC-CHHHHHHHhCcccccCC
Confidence 3467999999999987431 1 11222233322211 0 0 246899999999986532 22222211100 00011
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. -.++.+||++|.|++++++.|..
T Consensus 150 ~----~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 150 T----WHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred c----eEEEecccCCCCCHHHHHHHHhc
Confidence 1 14889999999999999998853
No 112
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.77 E-value=9.2e-08 Score=94.38 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=57.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+.. + ...+ ..++..+... .....|+++|+||+|+.... ...... +.+.+..+
T Consensus 71 ~~~ad~~i~v~D~~~~~-s-~~~~-~~~~~~i~~~------~~~~~piiiv~NK~Dl~~~~~~~~~~~----~~l~~~~~ 137 (191)
T cd04112 71 YRDAHALLLLYDITNKA-S-FDNI-RAWLTEIKEY------AQEDVVIMLLGNKADMSGERVVKREDG----ERLAKEYG 137 (191)
T ss_pred ccCCCEEEEEEECCCHH-H-HHHH-HHHHHHHHHh------CCCCCcEEEEEEcccchhccccCHHHH----HHHHHHcC
Confidence 45689999999998742 1 1112 2222333322 11346899999999997432 222222 23334455
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. .++.+||++|.|+++|+..|.+.+
T Consensus 138 ~----~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 138 V----PFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3 389999999999999999997654
No 113
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.77 E-value=6.9e-08 Score=92.17 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=56.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+.. + ...+..++..... ......|+++|+||+|+..... .......|. +..+
T Consensus 72 ~~~~~~ii~v~d~~~~~-s-----~~~l~~~~~~~~~---~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 138 (166)
T cd01869 72 YRGAHGIIIVYDVTDQE-S-----FNNVKQWLQEIDR---YASENVNKLLVGNKCDLTDKRVVDYSEAQEFA----DELG 138 (166)
T ss_pred hCcCCEEEEEEECcCHH-H-----HHhHHHHHHHHHH---hCCCCCcEEEEEEChhcccccCCCHHHHHHHH----HHcC
Confidence 45789999999998743 1 1122223322110 0113468999999999875432 223333332 3444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 139 ~----~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 139 I----PFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred C----eEEEEECCCCcCHHHHHHHHHHH
Confidence 3 38999999999999999988654
No 114
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.76 E-value=5.2e-08 Score=92.14 Aligned_cols=91 Identities=24% Similarity=0.275 Sum_probs=55.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..+++.+++|+|+.+... + .. ...+...+.+.. .....|+++|+||+|+.+... .......+ .+.++
T Consensus 70 ~~~~~~~ilv~d~~~~~s-~-~~-~~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 137 (163)
T cd04136 70 IKNGQGFVLVYSITSQSS-F-ND-LQDLREQILRVK-----DTENVPMVLVGNKCDLEDERVVSREEGQAL----ARQWG 137 (163)
T ss_pred hhcCCEEEEEEECCCHHH-H-HH-HHHHHHHHHHhc-----CCCCCCEEEEEECccccccceecHHHHHHH----HHHcC
Confidence 456899999999987431 1 11 112223333211 113468999999999975332 22222222 23444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 138 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 138 C----PFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred C----eEEEecCCCCCCHHHHHHHHHHh
Confidence 3 38999999999999999988753
No 115
>PTZ00258 GTP-binding protein; Provisional
Probab=98.75 E-value=1.8e-08 Score=110.50 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=64.8
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe------------------CCceEEEE
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------------------PAKAKLYD 456 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l------------------~~~~~liD 456 (666)
+.....|++||.||||||||+|+|.+.. . .++++||||++.......+ +.++.++|
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~-----~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvD 91 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-V-----PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITD 91 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCc-c-----cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEE
Confidence 3445789999999999999999998654 2 3468999999865533222 23589999
Q ss_pred CCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecC
Q 005972 457 TPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKA 493 (666)
Q Consensus 457 TPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~ 493 (666)
|||+.........| ...++...++.+...++++.
T Consensus 92 tpGLv~ga~~g~gL---g~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 92 IAGLVKGASEGEGL---GNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CCCcCcCCcchhHH---HHHHHHHHHHCCEEEEEEeC
Confidence 99999654422111 34556667888888888885
No 116
>PRK00089 era GTPase Era; Reviewed
Probab=98.75 E-value=1.4e-08 Score=107.16 Aligned_cols=120 Identities=25% Similarity=0.279 Sum_probs=76.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-hH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-EQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~~ 475 (666)
.+.|+++|.||||||||+|+|++..... +++.|+||++.+......+ .++.++||||+..+... +... ..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~-----vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~---l~~~~~~ 76 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI-----VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA---LNRAMNK 76 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee-----cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhH---HHHHHHH
Confidence 3679999999999999999999876443 3688999988654322112 37899999999866531 1111 11
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.........+...|.++..+.+.-.....++.+.....+++ .+.|+++..
T Consensus 77 ~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi---lVlNKiDl~ 126 (292)
T PRK00089 77 AAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI---LVLNKIDLV 126 (292)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE---EEEECCcCC
Confidence 12234566788889998876444333334444443334543 345666653
No 117
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.6e-09 Score=115.50 Aligned_cols=169 Identities=20% Similarity=0.134 Sum_probs=95.4
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccC--------c
Q 005972 201 DGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIP--------D 271 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~slLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP--------~ 271 (666)
-|--.|+||||||| ++|||.|....++|++..+-+ ||+-.-..++.....+.+- .
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GT----------------TRDaiea~v~~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGT----------------TRDAIEAQVTVNGVPVRLSDTAGIREES 330 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCc----------------chhhheeEeecCCeEEEEEecccccccc
Confidence 47777889999999 667899999999999887755 3333222222222222210 1
Q ss_pred hhHHHHH-HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHh-hh-hhhhhcCCCcEEEEEECCCCCCCC
Q 005972 272 FDFDRVI-ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEA-KD-DAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 272 ~d~~~~L-~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~-~~-~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
.+-...| .+++.+ ++..+|+|++|||+..-..+.+..+.+.+ +....- .. ..+. .+.|+|+|.||+|+.++-
T Consensus 331 ~~~iE~~gI~rA~k--~~~~advi~~vvda~~~~t~sd~~i~~~l-~~~~~g~~~~~~~~--~~~~~i~~~nk~D~~s~~ 405 (531)
T KOG1191|consen 331 NDGIEALGIERARK--RIERADVILLVVDAEESDTESDLKIARIL-ETEGVGLVVIVNKM--EKQRIILVANKSDLVSKI 405 (531)
T ss_pred CChhHHHhHHHHHH--HHhhcCEEEEEecccccccccchHHHHHH-HHhccceEEEeccc--cccceEEEechhhccCcc
Confidence 1111122 234445 67789999999999432222222223322 212110 00 0111 235899999999999762
Q ss_pred CC-hHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 349 VS-PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 349 ~~-~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.. ......|. ...|.+.+.-+..+|++++.|++.|.+.|.+.
T Consensus 406 ~~~~~~~~~~~----~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 406 PEMTKIPVVYP----SAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred ccccCCceecc----ccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 21 00011111 11233334445569999999999999888654
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.74 E-value=9.2e-08 Score=90.48 Aligned_cols=95 Identities=22% Similarity=0.152 Sum_probs=54.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.+.. + ...+...+...++.. .. ...|+++|+||+|+..... ...+...+. ...+..
T Consensus 65 ~~~~~~iv~v~D~~~~~-~-~~~~~~~~~~~~~~~----~~--~~~piilv~nK~Dl~~~~~-~~~i~~~~~--~~~~~~ 133 (160)
T cd04156 65 LENTDGLVYVVDSSDEA-R-LDESQKELKHILKNE----HI--KGVPVVLLANKQDLPGALT-AEEITRRFK--LKKYCS 133 (160)
T ss_pred hccCCEEEEEEECCcHH-H-HHHHHHHHHHHHhch----hh--cCCCEEEEEECcccccCcC-HHHHHHHcC--CcccCC
Confidence 45789999999998843 1 122233333333211 00 3468999999999964321 122221110 001110
Q ss_pred CCcceEEEEecccCcChhhHHHHHHh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.....++.+||++|.|++++++.|.+
T Consensus 134 ~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 134 DRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CCcEEEEecccccCCChHHHHHHHhc
Confidence 00124888999999999999998864
No 119
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.74 E-value=7.8e-08 Score=94.33 Aligned_cols=92 Identities=25% Similarity=0.207 Sum_probs=58.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
....+++++|+|+.+... .....+..++.. ...|+++|+||+|+++.... ..+...++.......
T Consensus 104 ~~~~~~~~~v~d~~~~~~----~~~~~i~~~l~~---------~~~~~iiv~nK~Dl~~~~~~-~~~~~~i~~~l~~~~- 168 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLK----ELDLQMIEWLKE---------YGIPVLIVLTKADKLKKGER-KKQLKKVRKALKFGD- 168 (196)
T ss_pred CccceEEEEEEecCCCCC----HHHHHHHHHHHH---------cCCcEEEEEECcccCCHHHH-HHHHHHHHHHHHhcC-
Confidence 345678999999876422 122334444433 23578999999999865431 112222222222212
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
..++++||+++.|++++++.|.+++.+
T Consensus 169 ---~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 ---DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ---CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 248999999999999999999887654
No 120
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.74 E-value=9.2e-08 Score=91.61 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=57.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|+|+.+... ......++..++.... ......|+++|+||+|+.+. .........+. ...+
T Consensus 70 ~~~~~~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~---~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 139 (165)
T cd04140 70 ISKGHAFILVYSVTSKQS---LEELKPIYELICEIKG---NNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWN 139 (165)
T ss_pred hhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhc---CCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhC
Confidence 456889999999987431 1112233344443211 00124689999999999763 22222222232 2333
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.++
T Consensus 140 ~----~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 C----AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred C----cEEEeecCCCCCHHHHHHHHHhc
Confidence 2 37899999999999999998764
No 121
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.74 E-value=9.3e-08 Score=90.52 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|+|+.+... + ..+.. ++..+.++. .....|+++|+||+|+............+. +..+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s-~-~~~~~-~~~~i~~~~-----~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~----~~~~ 136 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDT-F-TNLET-WLNELETYS-----TNNDIVKMLVGNKIDKENREVTREEGLKFA----RKHN 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHH-H-HhHHH-HHHHHHHhC-----CCCCCcEEEEEECCcccccccCHHHHHHHH----HHcC
Confidence 3457999999999987431 1 11221 223333221 113468999999999985554433333332 3334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. .++.+||++|.|++++++.+.+
T Consensus 137 ~----~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 M----LFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred C----EEEEEecCCCCCHHHHHHHHHH
Confidence 3 3899999999999999998865
No 122
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.72 E-value=3e-08 Score=102.94 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=56.5
Q ss_pred hhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005972 385 RNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 385 eeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.++...+.+......+|+++|.+|||||||+|+|++.....+ +..+++|+....+..... ..+.+|||||+...
T Consensus 18 ~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-----~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 18 LELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-----SAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred HHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-----CCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 445555556666678999999999999999999998765433 567778887766654433 36899999999866
Q ss_pred C
Q 005972 464 H 464 (666)
Q Consensus 464 ~ 464 (666)
.
T Consensus 93 ~ 93 (249)
T cd01853 93 V 93 (249)
T ss_pred h
Confidence 3
No 123
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.72 E-value=1.1e-07 Score=90.41 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=61.9
Q ss_pred CchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|+......|... ...++|++++|+|+.+... ...+ ..+++.+... . ...|+++|+||+|+.+...
T Consensus 60 ~G~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~s--~~~~-~~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 60 AGQELYSDMVSN-----YWESPSVFILVYDVSNKAS--FENC-SRWVNKVRTA------S-KHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred CCHHHHHHHHHH-----HhCCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------C-CCCCEEEEEECcccccccC
Confidence 665444444433 4567999999999987421 1111 2222322221 1 2468999999999976543
Q ss_pred -ChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 350 -SPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 -~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.......+ ....+. .++.+||++|.|+++|++.|.+.
T Consensus 125 ~~~~~~~~~----~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 125 VTDAQAQAF----AQANQL----KFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred CCHHHHHHH----HHHcCC----eEEEEeCCCCCChHHHHHHHHHH
Confidence 21122222 233343 38899999999999999988753
No 124
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.72 E-value=1.3e-07 Score=90.82 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+.. ++. .+.+ ++..+.+. .....|+++|+||+|+.... ........+ .+..
T Consensus 72 ~~~~ad~~i~v~d~~~~~-s~~-~~~~-~~~~i~~~------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~ 138 (167)
T cd01867 72 YYRGAMGIILVYDITDEK-SFE-NIRN-WMRNIEEH------ASEDVERMLVGNKCDMEEKRVVSKEEGEAL----ADEY 138 (167)
T ss_pred HhCCCCEEEEEEECcCHH-HHH-hHHH-HHHHHHHh------CCCCCcEEEEEECcccccccCCCHHHHHHH----HHHc
Confidence 356799999999998742 111 1221 22223221 11346899999999998532 222233333 2344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++++..|.+.
T Consensus 139 ~~----~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 139 GI----KFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988764
No 125
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.72 E-value=2e-08 Score=105.57 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=58.3
Q ss_pred EEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC------------------CceEEEECCCCCC
Q 005972 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP------------------AKAKLYDTPGLLH 462 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~------------------~~~~liDTPGi~~ 462 (666)
+++||.||||||||+|+|++... . ++++|+||++.......++ ..+.++||||+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~-----~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~ 74 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-E-----AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVK 74 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-c-----cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCC
Confidence 47899999999999999998653 3 3689999988654322222 2489999999996
Q ss_pred CCcccccCChhhHHHHHhhhhcCceeEEecC
Q 005972 463 PHLMSMRLNRDEQKMVEIRKELQPRTYRVKA 493 (666)
Q Consensus 463 ~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~ 493 (666)
......-| ...++...+..+...++++.
T Consensus 75 ~a~~~~gl---g~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 75 GASKGEGL---GNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred CCchhhHH---HHHHHHHHHhCCEEEEEEeC
Confidence 54321111 23455555677777887764
No 126
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.71 E-value=8.2e-08 Score=91.95 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=53.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. ++ ..+.+.+.+.+.. ... ..+|++||+||+||.......+....|. . ....
T Consensus 64 ~~~~ad~~i~v~D~~~~~-s~-~~~~~~~~~~~~~----~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~--~-~~~~ 132 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRE-RI-GEAREELQRMLNE----DEL--RDAVLLVFANKQDLPNAMSAAEVTDKLG--L-HSLR 132 (159)
T ss_pred HhcCCCEEEEEEeCCCHH-HH-HHHHHHHHHHHhc----HHh--cCCCEEEEEECCCCCCCCCHHHHHHHhC--c-cccC
Confidence 356799999999998743 11 1222222222221 111 2468999999999964322111112110 0 0000
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+...++.+||++|.|++++++.|.+
T Consensus 133 -~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 133 -NRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred -CCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 01124678999999999999988753
No 127
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.71 E-value=3e-08 Score=107.81 Aligned_cols=86 Identities=23% Similarity=0.228 Sum_probs=60.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC------------------CceEEEECCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP------------------AKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~------------------~~~~liDTPGi 460 (666)
.+|++||.||||||||+|+|++.. .. ++++||||++...-...++ ..+.++||||+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~-----v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL 76 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AE-----AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGL 76 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-Ce-----ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCC
Confidence 479999999999999999999865 33 3689999988653221121 25899999999
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecC
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKA 493 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~ 493 (666)
.........| ...++...++.+...++++.
T Consensus 77 ~~~a~~g~gl---g~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 77 VKGASKGEGL---GNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred CCCCChHHHH---HHHHHHHHHhCCEEEEEEeC
Confidence 8654322111 33555556777888888875
No 128
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.71 E-value=1.3e-07 Score=89.19 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=56.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....++.+++|+|+.++.. + ......+.. +.+.. .....|+++|+||+|+... .........+ .+.+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s-~-~~~~~~~~~-~~~~~-----~~~~~piiiv~NK~D~~~~~~~~~~~~~~~----~~~~ 135 (164)
T cd04139 68 YHRSGEGFLLVFSITDMES-F-TATAEFREQ-ILRVK-----DDDNVPLLLVGNKCDLEDKRQVSSEEAANL----ARQW 135 (164)
T ss_pred HhhcCCEEEEEEECCCHHH-H-HHHHHHHHH-HHHhc-----CCCCCCEEEEEEccccccccccCHHHHHHH----HHHh
Confidence 3456789999999877421 1 111222222 22210 0134689999999999762 2322222222 2344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 136 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 136 GV----PYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred CC----eEEEeeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988764
No 129
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.70 E-value=5.2e-08 Score=111.40 Aligned_cols=151 Identities=20% Similarity=0.191 Sum_probs=90.6
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccc---ccC------chh
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIP------DFD 273 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP------~~d 273 (666)
..|.+|.||+|||+| |+|.|.+... . .-++.|-.|.-|.......++ .+| .+.
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~V------------g-----NwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKV------------G-----NWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCcee------------c-----CCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence 367899999998877 9999998221 1 111222222222222221111 123 233
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
.++.+.+.+.. ..+.|+|+.|||+...+-. ....++ |... ..|+|+++|++|...+.-..
T Consensus 68 ~DE~Var~~ll---~~~~D~ivnVvDAtnLeRn-----LyltlQ-LlE~---------g~p~ilaLNm~D~A~~~Gi~-- 127 (653)
T COG0370 68 EDEKVARDFLL---EGKPDLIVNVVDATNLERN-----LYLTLQ-LLEL---------GIPMILALNMIDEAKKRGIR-- 127 (653)
T ss_pred chHHHHHHHHh---cCCCCEEEEEcccchHHHH-----HHHHHH-HHHc---------CCCeEEEeccHhhHHhcCCc--
Confidence 44444443322 3678999999999874311 111222 2222 34799999999998764311
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
+ =.+.+.+.+|.| |+++||++|.|+++|++.+.+..+.
T Consensus 128 I--D~~~L~~~LGvP----Vv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 128 I--DIEKLSKLLGVP----VVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred c--cHHHHHHHhCCC----EEEEEeecCCCHHHHHHHHHHhccc
Confidence 1 122334677887 9999999999999999999876543
No 130
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.70 E-value=1.5e-07 Score=92.83 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... + ..+ ..++..+..... ......|+++|+||+|+..... .......+ .+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s-~-~~~-~~~~~~i~~~~~---~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----~~~~ 136 (190)
T cd04144 67 WIREGEGFILVYSITSRST-F-ERV-ERFREQIQRVKD---ESAADVPIMIVGNKCDKVYEREVSTEEGAAL----ARRL 136 (190)
T ss_pred HHHhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHHhc---ccCCCCCEEEEEEChhccccCccCHHHHHHH----HHHh
Confidence 3457899999999987431 1 111 223333332210 0012468999999999975332 22222233 3344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++++..|.+.
T Consensus 137 ~~----~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 137 GC----EFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred CC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 53 38899999999999999988754
No 131
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.70 E-value=2.2e-07 Score=89.13 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=57.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
+..+|++++|+|+.++.. ...+...+++.++.. . ...|+++|+||+|+.+..... .+...+......+.
T Consensus 68 ~~~ad~~ilv~d~~~~~s--~~~~~~~~~~~i~~~------~-~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~- 136 (166)
T cd01893 68 IRKANVICLVYSVDRPST--LERIRTKWLPLIRRL------G-VKVPIILVGNKSDLRDGSSQA-GLEEEMLPIMNEFR- 136 (166)
T ss_pred cccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEEchhcccccchh-HHHHHHHHHHHHHh-
Confidence 457999999999987431 111112233334331 1 346899999999998654311 11222212222221
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
....++.+||++|.|+++|.+.+...
T Consensus 137 -~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 137 -EIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred -cccEEEEeccccccCHHHHHHHHHHH
Confidence 12358899999999999999988764
No 132
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.70 E-value=8.6e-08 Score=91.33 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=55.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+... + ..+.+ ++..+.+.. ...+.|+++|+||+||..... .......+ .+.++
T Consensus 70 ~~~~d~~ilv~d~~~~~s-~-~~~~~-~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 137 (164)
T cd04175 70 MKNGQGFVLVYSITAQST-F-NDLQD-LREQILRVK-----DTEDVPMILVGNKCDLEDERVVGKEQGQNL----ARQWG 137 (164)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHHH-HHHHHHHhc-----CCCCCCEEEEEECCcchhccEEcHHHHHHH----HHHhC
Confidence 456889999999876321 1 11221 222222110 113468999999999975432 22222333 23444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 138 ~----~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 138 C----AFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred C----EEEEeeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 133
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.69 E-value=2.7e-07 Score=91.29 Aligned_cols=88 Identities=22% Similarity=0.121 Sum_probs=49.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+. ..+. ...++..+.. ...|+++|+||+|+..... ...+..+.+ ++..++
T Consensus 85 ~~~~~d~~ilV~d~~~~--~~~~--~~~~~~~~~~---------~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~-~~~~~~ 149 (194)
T cd01891 85 VLSMVDGVLLLVDASEG--PMPQ--TRFVLKKALE---------LGLKPIVVINKIDRPDARP-EEVVDEVFD-LFIELG 149 (194)
T ss_pred HHHhcCEEEEEEECCCC--ccHH--HHHHHHHHHH---------cCCCEEEEEECCCCCCCCH-HHHHHHHHH-HHHHhC
Confidence 34578999999999873 2222 1222232222 2457999999999975322 112223222 222221
Q ss_pred CC--C-cceEEEEecccCcChhhHHH
Q 005972 367 AP--K-LNGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 367 ~~--~-~~~V~~VSAkkg~GveeLl~ 389 (666)
.. . --.++++||++|.|+.++.+
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred CccccCccCEEEeehhcccccccccc
Confidence 10 0 11489999999988765533
No 134
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.69 E-value=7.7e-08 Score=107.06 Aligned_cols=168 Identities=17% Similarity=0.087 Sum_probs=87.3
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHH--HHhhhcCCc-----eeec--------ccccceecceeccccccc
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAR--EAQKEKGEV-----TVCA--------RCHSLRNYGQVKNEVAEN 267 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~--~a~~~~~~~-----~vCq--------RC~rLr~ygkv~~~~~~~ 267 (666)
..+++|+||+||||| ++|....-++..+..+.- ++.+ .+.. .++. ..++...+..+......+
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~-~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKE-KGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHh-cCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 356799999997766 999987766655432111 1110 1110 0111 112222222222222222
Q ss_pred c---cCchh-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCC
Q 005972 268 L---IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 268 ~---iP~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
. .|++. |.+.+. . .+..+|++++|+|+.+..+..+.. ...+..+... +.+++++|+||+|
T Consensus 87 ~liDtpG~~~~~~~~~----~--~~~~aD~~ilVvDa~~~~~~~~~~--~~~~~~~~~~--------~~~~iivviNK~D 150 (425)
T PRK12317 87 TIVDCPGHRDFVKNMI----T--GASQADAAVLVVAADDAGGVMPQT--REHVFLARTL--------GINQLIVAINKMD 150 (425)
T ss_pred EEEECCCcccchhhHh----h--chhcCCEEEEEEEcccCCCCCcch--HHHHHHHHHc--------CCCeEEEEEEccc
Confidence 2 27652 333322 2 456799999999998742222221 1222222221 2346899999999
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhCCCCC-cceEEEEecccCcChhhHH
Q 005972 344 LLPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 344 LLpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~GveeLl 388 (666)
+..... ....+...++.+.+..++.. ...++++||++|.|++++.
T Consensus 151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 976321 11122233344444555321 2358999999999998743
No 135
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.68 E-value=2.4e-07 Score=90.96 Aligned_cols=93 Identities=26% Similarity=0.249 Sum_probs=56.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH-HHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL-DRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L-~~wl~~~~k~~g 366 (666)
..++|++++|+|+.+.. ++ .. ...++..+... ....|+++|+||+|+.........+ ...+..+....+
T Consensus 71 ~~~~d~iilv~d~~~~~-s~-~~-~~~~~~~i~~~-------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~ 140 (193)
T cd04118 71 YRGAKAAIVCYDLTDSS-SF-ER-AKFWVKELQNL-------EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK 140 (193)
T ss_pred cCCCCEEEEEEECCCHH-HH-HH-HHHHHHHHHhc-------CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC
Confidence 45799999999998742 11 11 12222333221 1246899999999997542110000 112222333444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 141 A----QHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999998764
No 136
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.68 E-value=1.5e-07 Score=90.82 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=57.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.++. ++ ..+...+.+.++.. .. ...|++||+||+||... .....+..+++. ...+.
T Consensus 64 ~~~ad~ii~V~D~s~~~-s~-~~~~~~~~~~~~~~----~~--~~~piilv~NK~Dl~~~-~~~~~~~~~~~~--~~~~~ 132 (169)
T cd04158 64 YLNTQAVVFVVDSSHRD-RV-SEAHSELAKLLTEK----EL--RDALLLIFANKQDVAGA-LSVEEMTELLSL--HKLCC 132 (169)
T ss_pred hccCCEEEEEEeCCcHH-HH-HHHHHHHHHHhcCh----hh--CCCCEEEEEeCcCcccC-CCHHHHHHHhCC--ccccC
Confidence 45689999999998743 11 22223332222211 01 23689999999999643 222334443211 01111
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.+...++.+||++|.|++++++.|.+.+.+
T Consensus 133 ~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 133 GRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 111247778999999999999998765443
No 137
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.68 E-value=6.3e-08 Score=108.40 Aligned_cols=123 Identities=22% Similarity=0.223 Sum_probs=76.1
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChh
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRD 473 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~ 473 (666)
+.++.+|.++|.||||||||+|+|++..... ++..||||++.+.....+++ .+.++||||+.......... .
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai-----vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~--g 272 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAI-----VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERL--G 272 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcc-----cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHH--H
Confidence 3456789999999999999999999865433 35889999998765544443 57899999997543211000 0
Q ss_pred hHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 474 EQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 474 ~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
........+..+.+.|+++..+....... ++..+.....++ +.+.||.++.
T Consensus 273 i~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~pi---IlV~NK~Dl~ 323 (442)
T TIGR00450 273 IEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPF---ILVLNKIDLK 323 (442)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCE---EEEEECccCC
Confidence 01122345667888888887654433333 333333223343 2455777753
No 138
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.67 E-value=3.7e-07 Score=87.33 Aligned_cols=88 Identities=23% Similarity=0.209 Sum_probs=55.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.... ..+ ..++..++.. ....|+++|+||+|+.+.. ...... +.+..+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~--~~~-~~~~~~i~~~-------~~~~p~ivv~nK~Dl~~~~--~~~~~~----~~~~~~ 132 (161)
T cd04124 69 YYHKAHACILVFDVTRKITY--KNL-SKWYEELREY-------RPEIPCIVVANKIDLDPSV--TQKKFN----FAEKHN 132 (161)
T ss_pred HhCCCCEEEEEEECCCHHHH--HHH-HHHHHHHHHh-------CCCCcEEEEEECccCchhH--HHHHHH----HHHHcC
Confidence 45679999999999874311 111 2223333321 1246899999999985321 111112 223334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.+.+.
T Consensus 133 ~----~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 133 L----PLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999988764
No 139
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.67 E-value=1e-07 Score=92.06 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=55.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. ++ ......+...+.... . ...|+++|+||+|+.... ....+..+++... ..
T Consensus 78 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~~-----~-~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~--~~ 146 (173)
T cd04154 78 YFESTDALIWVVDSSDRL-RL-DDCKRELKELLQEER-----L-AGATLLILANKQDLPGAL-SEEEIREALELDK--IS 146 (173)
T ss_pred HhCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHhChh-----h-cCCCEEEEEECcccccCC-CHHHHHHHhCccc--cC
Confidence 345799999999998742 11 112222222222110 1 346899999999997543 2233444331100 00
Q ss_pred CCCcceEEEEecccCcChhhHHHHHH
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
. ....++.+||++|.|++++++.|.
T Consensus 147 ~-~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 147 S-HHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred C-CceEEEeccCCCCcCHHHHHHHHh
Confidence 0 123589999999999999998875
No 140
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.67 E-value=2.1e-07 Score=90.21 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. ++ ......+.+.+... .. ...|++||+||+|+... ...+.+..++.. .+...
T Consensus 73 ~~~~a~~ii~v~D~t~~~-s~-~~~~~~~~~~~~~~----~~--~~~piilv~NK~Dl~~~-~~~~~i~~~~~~-~~~~~ 142 (168)
T cd04149 73 YYTGTQGLIFVVDSADRD-RI-DEARQELHRIINDR----EM--RDALLLVFANKQDLPDA-MKPHEIQEKLGL-TRIRD 142 (168)
T ss_pred HhccCCEEEEEEeCCchh-hH-HHHHHHHHHHhcCH----hh--cCCcEEEEEECcCCccC-CCHHHHHHHcCC-CccCC
Confidence 346799999999998843 11 12222222222211 01 24689999999998643 223334444210 00001
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
..-.++.+||++|.|++++++.|.+
T Consensus 143 --~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 143 --RNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --CcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1124789999999999999988853
No 141
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.67 E-value=3.7e-07 Score=87.43 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... .+.+..++..... ......|+++|+||+|+.... ........|. +..
T Consensus 71 ~~~~~~~~ilv~d~~~~~s------~~~~~~~~~~~~~---~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~----~~~ 137 (166)
T cd04122 71 YYRGAAGALMVYDITRRST------YNHLSSWLTDARN---LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA----DEN 137 (166)
T ss_pred HhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHH---hCCCCCeEEEEEECcccccccCcCHHHHHHHH----HHc
Confidence 3457999999999988431 1122233332111 111346899999999997543 2333444443 334
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
+. .++.+||++|.|+++++..+..
T Consensus 138 ~~----~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 138 GL----LFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHH
Confidence 43 3889999999999999877754
No 142
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.66 E-value=1.6e-07 Score=91.88 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHH
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATR 281 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~ 281 (666)
+..+++|.+|+|||+| +++.+.+.... .+..-..+.... ++.... .-+.+|+....+.+...
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~~~--------------~~T~~~~~~~i~-~~~~~~--~l~D~~G~~~~~~~~~~ 82 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLAQH--------------VPTLHPTSEELT-IGNIKF--KTFDLGGHEQARRLWKD 82 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCccc--------------CCccCcceEEEE-ECCEEE--EEEECCCCHHHHHHHHH
Confidence 4457799999997766 88877653210 001101111110 111100 00123554333333222
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR 361 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~ 361 (666)
....+|.+++|+|+.+.. ++ ......+...++.. . ..+.|+++|+||+|+... .....+..++...
T Consensus 83 -----~~~~ad~iilV~D~~~~~-s~-~~~~~~~~~i~~~~----~--~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~ 148 (190)
T cd00879 83 -----YFPEVDGIVFLVDAADPE-RF-QESKEELDSLLSDE----E--LANVPFLILGNKIDLPGA-VSEEELRQALGLY 148 (190)
T ss_pred -----HhccCCEEEEEEECCcHH-HH-HHHHHHHHHHHcCc----c--ccCCCEEEEEeCCCCCCC-cCHHHHHHHhCcc
Confidence 345689999999998742 11 11222222222110 0 134689999999999642 3334455544211
Q ss_pred HHhC--------CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 362 AKAG--------GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 362 ~k~~--------g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.... .......++.+||++|.|++++++.|.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 149 GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 0000 00011248999999999999999998764
No 143
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.65 E-value=3e-07 Score=91.38 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=55.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... + ..+ ..++..+.... .....|+|+|+||+|+.+...... .....+......+
T Consensus 67 ~~~~ad~vilv~d~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piilv~NK~Dl~~~~~~v~-~~~~~~~~~~~~~ 137 (198)
T cd04147 67 SIQNSDAFALVYAVDDPES-F-EEV-ERLREEILEVK-----EDKFVPIVVVGNKADSLEEERQVP-AKDALSTVELDWN 137 (198)
T ss_pred HhhcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCcEEEEEEcccccccccccc-HHHHHHHHHhhcC
Confidence 4567999999999987421 1 111 12222222211 013468999999999976322111 1111111111222
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. .++.+||++|.|+++|++.|.+.+
T Consensus 138 ~----~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 138 C----GFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred C----cEEEecCCCCCCHHHHHHHHHHHh
Confidence 2 378899999999999999987653
No 144
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.65 E-value=6.9e-08 Score=111.73 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=56.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.++|+|++|+|+.+.+- . . .+...+.+ .+.|+++|+||+|+..+...... .+.+.+.+|.+
T Consensus 71 ~~aDvvI~VvDat~ler----~-l-~l~~ql~~---------~~~PiIIVlNK~Dl~~~~~i~~d----~~~L~~~lg~p 131 (591)
T TIGR00437 71 EKPDLVVNVVDASNLER----N-L-YLTLQLLE---------LGIPMILALNLVDEAEKKGIRID----EEKLEERLGVP 131 (591)
T ss_pred cCCCEEEEEecCCcchh----h-H-HHHHHHHh---------cCCCEEEEEehhHHHHhCCChhh----HHHHHHHcCCC
Confidence 46899999999987421 1 1 11122222 34689999999999754432111 23344556654
Q ss_pred CcceEEEEecccCcChhhHHHHHHhh
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
++++||++|.|+++|++.|.+.
T Consensus 132 ----vv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 132 ----VVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred ----EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999999764
No 145
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.65 E-value=2.1e-07 Score=89.34 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=57.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH---------HHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
....+|++++|+|+.+.. ++ ..+...++..+... . ...|+++|+||+|+.+.......+ ..-
T Consensus 66 ~~~~~d~~ilv~d~~~~~-s~-~~~~~~~~~~i~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 136 (174)
T smart00174 66 SYPDTDVFLICFSVDSPA-SF-ENVKEKWYPEVKHF------C-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQ 136 (174)
T ss_pred hcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHhh------C-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHH
Confidence 456799999999998742 11 11112222333221 1 356999999999997532110000 001
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...+.+.++ ...++.+||++|.|+++|++.|...
T Consensus 137 ~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 137 GEALAKRIG---AVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHcC---CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 122334555 2348899999999999999988754
No 146
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.65 E-value=3.5e-07 Score=86.49 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=82.2
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHHhcC
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMK 284 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~ 284 (666)
+++|.||+|||+| +++.+.+.. ......+...+.+. |....- .-+.+|+....+.+...
T Consensus 3 ~iiG~~~~GKssli~~~~~~~~~--------------~~~~t~~~~~~~~~-~~~~~~--~i~D~~G~~~~~~~~~~--- 62 (158)
T cd00878 3 LILGLDGAGKTTILYKLKLGEVV--------------TTIPTIGFNVETVE-YKNVSF--TVWDVGGQDKIRPLWKH--- 62 (158)
T ss_pred EEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCcCcceEEEE-ECCEEE--EEEECCCChhhHHHHHH---
Confidence 4689999997755 988877621 11122222222222 111110 00123665433333332
Q ss_pred cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHh
Q 005972 285 PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA 364 (666)
Q Consensus 285 P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~ 364 (666)
....+|++++|+|+.+... + .... .++........ ....|+++|+||+|+..... ...+..++....
T Consensus 63 --~~~~~~~~i~v~D~~~~~~-~-~~~~----~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~-- 129 (158)
T cd00878 63 --YYENTNGIIFVVDSSDRER-I-EEAK----EELHKLLNEEE--LKGVPLLIFANKQDLPGALS-VSELIEKLGLEK-- 129 (158)
T ss_pred --HhccCCEEEEEEECCCHHH-H-HHHH----HHHHHHHhCcc--cCCCcEEEEeeccCCccccC-HHHHHHhhChhh--
Confidence 3457899999999987431 1 1111 22222111000 13468999999999986542 222333221110
Q ss_pred CCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
... ....++.+||++|.|++++++.|..
T Consensus 130 ~~~-~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 130 ILG-RRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred ccC-CcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 111 1345899999999999999988864
No 147
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.64 E-value=1.3e-07 Score=89.90 Aligned_cols=91 Identities=23% Similarity=0.217 Sum_probs=55.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+... + ..+. .+...+.+.. .....|+++|+||+|+.+... ...... .+.+.++
T Consensus 70 ~~~ad~~i~v~d~~~~~s-~-~~~~-~~~~~~~~~~-----~~~~~piviv~nK~Dl~~~~~~~~~~~~----~~~~~~~ 137 (163)
T cd04176 70 IKNGQGFIVVYSLVNQQT-F-QDIK-PMRDQIVRVK-----GYEKVPIILVGNKVDLESEREVSSAEGR----ALAEEWG 137 (163)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHhc-----CCCCCCEEEEEECccchhcCccCHHHHH----HHHHHhC
Confidence 457899999999988431 1 1121 2222232210 113468999999999975432 211222 2233444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 138 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 138 C----PFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred C----EEEEecCCCCCCHHHHHHHHHHh
Confidence 3 38899999999999999988754
No 148
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.64 E-value=4.1e-07 Score=106.32 Aligned_cols=171 Identities=17% Similarity=0.104 Sum_probs=91.1
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHh-hhcCC--c-----eeeccc--------ccceecceeccccccc
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQ-KEKGE--V-----TVCARC--------HSLRNYGQVKNEVAEN 267 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~-~~~~~--~-----~vCqRC--------~rLr~ygkv~~~~~~~ 267 (666)
.+++|.||+||||| ++|....-++.+++....+.. ...+. . .+..+. +....+..+.....++
T Consensus 27 i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~ 106 (632)
T PRK05506 27 FITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKF 106 (632)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceE
Confidence 46799999997766 999988766665432211100 01111 1 111111 1222233332222333
Q ss_pred cc---Cchh-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCC
Q 005972 268 LI---PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 268 ~i---P~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
.+ |++. |.+.|.. ++..+|++++|||+.+. ..++. ...+..+... +.+++|+|+||+|
T Consensus 107 ~liDtPG~~~f~~~~~~------~~~~aD~~llVvda~~g--~~~~t--~e~~~~~~~~--------~~~~iivvvNK~D 168 (632)
T PRK05506 107 IVADTPGHEQYTRNMVT------GASTADLAIILVDARKG--VLTQT--RRHSFIASLL--------GIRHVVLAVNKMD 168 (632)
T ss_pred EEEECCChHHHHHHHHH------HHHhCCEEEEEEECCCC--ccccC--HHHHHHHHHh--------CCCeEEEEEEecc
Confidence 33 7753 3333332 45689999999999873 33321 1122222221 2357899999999
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChh------------hHHHHHHhh
Q 005972 344 LLPSQV-SPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVR------------NLLAFIKEL 394 (666)
Q Consensus 344 LLpk~~-~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gve------------eLl~~I~~~ 394 (666)
++.... ....+..-+..+.+.+++. ...++++||++|.|+. .|++.|...
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~ 231 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLH-DVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV 231 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCC-CccEEEEecccCCCccccccCCCcccHhHHHHHHhcC
Confidence 985322 1111222223333455532 2348999999999987 377777654
No 149
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.64 E-value=1.2e-07 Score=106.20 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=81.4
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc---cccCchh---
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE---NLIPDFD--- 273 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~---~~iP~~d--- 273 (666)
+|+..+++|.||+||| ++|++.+....+++..+.+ ++....+.+...... +..|+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt----------------Trd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT----------------TRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc----------------EEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 6888899999999966 5599998764443332211 111111111111111 1124431
Q ss_pred -HHHHH-HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh
Q 005972 274 -FDRVI-ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 274 -~~~~L-~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
+.... ...... .+.++|++++|+|+.+... .. ..++..+.. ..+|+|+|+||+|+... .
T Consensus 266 ~~ie~~gi~~~~~--~~~~aD~il~V~D~s~~~s--~~---~~~l~~~~~---------~~~piIlV~NK~Dl~~~-~-- 326 (442)
T TIGR00450 266 DFVERLGIEKSFK--AIKQADLVIYVLDASQPLT--KD---DFLIIDLNK---------SKKPFILVLNKIDLKIN-S-- 326 (442)
T ss_pred hHHHHHHHHHHHH--HHhhCCEEEEEEECCCCCC--hh---HHHHHHHhh---------CCCCEEEEEECccCCCc-c--
Confidence 11111 111222 4678999999999987432 11 112222221 24689999999999654 1
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...+ .+.++.+ ++.+||++ .|++++++.|.+.
T Consensus 327 --~~~~----~~~~~~~----~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 327 --LEFF----VSSKVLN----SSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred --hhhh----hhhcCCc----eEEEEEec-CCHHHHHHHHHHH
Confidence 2222 1233432 78899998 5888888777653
No 150
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.63 E-value=5.4e-07 Score=85.43 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=56.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+.... ..+. .++..+... .....|+++|+||+|+.... .....+..+ .+..+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~--~~~~-~~~~~~~~~------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~~~~ 136 (161)
T cd04113 70 YRGAAGALLVYDITNRTSF--EALP-TWLSDARAL------ASPNIVVILVGNKSDLADQREVTFLEASRF----AQENG 136 (161)
T ss_pred hcCCCEEEEEEECCCHHHH--HHHH-HHHHHHHHh------CCCCCeEEEEEEchhcchhccCCHHHHHHH----HHHcC
Confidence 4578999999999884311 1122 222222221 11346899999999997543 222333333 23444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. .++.+||+++.|++++++.+..
T Consensus 137 ~----~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 L----LFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred C----EEEEEECCCCCCHHHHHHHHHH
Confidence 3 3899999999999999998864
No 151
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.63 E-value=3.3e-07 Score=88.75 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=55.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|+|+.+.. .......++..+.+.. .....|+|+|+||+|+..... ....+ ..+.+.++
T Consensus 70 ~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~-----~~~~~p~ilv~NK~Dl~~~~~~~~~~~----~~~~~~~~ 137 (180)
T cd04137 70 SIGIHGYILVYSVTSRK---SFEVVKVIYDKILDML-----GKESVPIVLVGNKSDLHTQRQVSTEEG----KELAESWG 137 (180)
T ss_pred HhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhc-----CCCCCCEEEEEEchhhhhcCccCHHHH----HHHHHHcC
Confidence 45688999999998732 1111222222222110 112458999999999975332 11112 22233444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||+++.|+.+++..|.+.
T Consensus 138 ~----~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 138 A----AFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999988764
No 152
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.62 E-value=2.1e-07 Score=87.20 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=56.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... + ... ..++..+.... .....|+++|+||+|+... ..... .+..+.+..
T Consensus 67 ~~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~~-----~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~ 134 (160)
T cd00876 67 YIRQGDGFILVYSITDRES-F-EEI-KGYREQILRVK-----DDEDIPIVLVGNKCDLENERQVSKE----EGKALAKEW 134 (160)
T ss_pred HHhcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCcEEEEEECCcccccceecHH----HHHHHHHHc
Confidence 3457899999999877431 1 111 12222222210 0024789999999999863 22222 223333444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
+. .++.+||+++.|+++|++.|.+
T Consensus 135 ~~----~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 135 GC----PFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CC----cEEEeccCCCCCHHHHHHHHHh
Confidence 43 3899999999999999999875
No 153
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.62 E-value=3.1e-07 Score=84.36 Aligned_cols=91 Identities=24% Similarity=0.149 Sum_probs=57.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++..... ..+...... .+.|+++|+||+|+.+... +..+.+.......
T Consensus 72 ~~~~~d~il~v~~~~~~~~~~~----~~~~~~~~~---------~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~ 134 (163)
T cd00880 72 VLERADLILFVVDADLRADEEE----EKLLELLRE---------RGKPVLLVLNKIDLLPEEE----EEELLELRLLILL 134 (163)
T ss_pred HHHhCCEEEEEEeCCCCCCHHH----HHHHHHHHh---------cCCeEEEEEEccccCChhh----HHHHHHHHHhhcc
Confidence 3467899999999998643221 111222221 3468999999999987654 3333211111111
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
......++.+||+++.|+++|++.|...
T Consensus 135 ~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 135 LLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 1113458999999999999999988753
No 154
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.61 E-value=7.4e-07 Score=85.04 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=55.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..++... ....|+++|+||+|+.+..... ....+.+.+...
T Consensus 76 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~l~~~~------~~~~~~i~v~NK~D~~~~~~i~---~~~~~~~~~~~~ 143 (169)
T cd04114 76 YYRSANALILTYDITCEES--FRCL-PEWLREIEQYA------NNKVITILVGNKIDLAERREVS---QQRAEEFSDAQD 143 (169)
T ss_pred HhcCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhC------CCCCeEEEEEECcccccccccC---HHHHHHHHHHcC
Confidence 3456899999999987321 1111 12223333211 1346789999999997543211 111222222222
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..++.+||++|.|++++++.|...
T Consensus 144 ----~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 144 ----MYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 248899999999999999998753
No 155
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.61 E-value=3.9e-07 Score=90.66 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-CCCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~ 365 (666)
...+++.+++|+|+.++.. + ..+ ..+...+..... .......|++||+||+||.+ .......+..|. +..
T Consensus 70 ~~~~a~~~ilv~D~t~~~s-~-~~~-~~~~~~i~~~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~~~ 140 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPST-F-EAV-LKWKADLDSKVT--LPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC----KEN 140 (201)
T ss_pred HhCCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhhc--ccCCCCCcEEEEEECCCcccccccCHHHHHHHH----HHc
Confidence 3457999999999987431 1 111 112222222100 00013468999999999974 333334444443 444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+ +..++.+||++|.|++++++.|.+.
T Consensus 141 ~---~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 141 G---FIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred C---CceEEEEeCCCCCCHHHHHHHHHHH
Confidence 4 3358999999999999999988764
No 156
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.61 E-value=3.7e-07 Score=90.82 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=56.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..+++.+++|+|+.+... + ..+. .+++.+... . ...|+++|+||+|+.+... .......+ .+..+
T Consensus 76 ~~~a~~iilv~D~~~~~s-~-~~~~-~~~~~i~~~------~-~~~piivVgNK~Dl~~~~~~~~~~~~~~----~~~~~ 141 (199)
T cd04110 76 YRGTHGVIVVYDVTNGES-F-VNVK-RWLQEIEQN------C-DDVCKVLVGNKNDDPERKVVETEDAYKF----AGQMG 141 (199)
T ss_pred hCCCcEEEEEEECCCHHH-H-HHHH-HHHHHHHHh------C-CCCCEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 456899999999988431 1 1111 122223221 1 3468999999999976432 22222222 33444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|...
T Consensus 142 ~----~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 142 I----SLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred C----EEEEEECCCCcCHHHHHHHHHHH
Confidence 3 38999999999999999998754
No 157
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.61 E-value=7.4e-07 Score=84.29 Aligned_cols=89 Identities=24% Similarity=0.303 Sum_probs=56.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|.+++|+|+.+... + ..+..++..... .. ...|+++|+||+|+..... .......+ .+.+
T Consensus 71 ~~~~~~~~v~v~d~~~~~s-~-----~~l~~~~~~~~~---~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~----~~~~ 136 (162)
T cd04106 71 YYRGAQACILVFSTTDRES-F-----EAIESWKEKVEA---EC-GDIPMVLVQTKIDLLDQAVITNEEAEAL----AKRL 136 (162)
T ss_pred HhcCCCEEEEEEECCCHHH-H-----HHHHHHHHHHHH---hC-CCCCEEEEEEChhcccccCCCHHHHHHH----HHHc
Confidence 3457899999999987431 1 122223222110 01 3468999999999986432 22223333 3455
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
+. .++.+||++|.|+++|++.|..
T Consensus 137 ~~----~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 137 QL----PLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHH
Confidence 54 3899999999999999998865
No 158
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.60 E-value=3.5e-07 Score=91.45 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... .+....+.+.+.... .......|+++|+||+|+..... ....+..|.+ +..
T Consensus 77 ~~~~ad~iilv~D~~~~~S---~~~~~~~~~~i~~~~---~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~ 147 (198)
T cd04142 77 GLRNSRAFILVYDICSPDS---FHYVKLLRQQILETR---PAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSW 147 (198)
T ss_pred hhccCCEEEEEEECCCHHH---HHHHHHHHHHHHHhc---ccCCCCCCEEEEEECccccccccccHHHHHHHHH---Hhc
Confidence 4578999999999987421 111122222222210 00013468999999999965432 2222333321 223
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.+...
T Consensus 148 ~~----~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 148 KC----GYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred CC----cEEEecCCCCCCHHHHHHHHHHH
Confidence 32 38999999999999999888753
No 159
>PTZ00369 Ras-like protein; Provisional
Probab=98.59 E-value=2.7e-07 Score=90.87 Aligned_cols=92 Identities=22% Similarity=0.186 Sum_probs=56.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... + ..+. .+...+.+.. ...+.|+++|+||+|+.... ........| .+.+
T Consensus 73 ~~~~~d~iilv~D~s~~~s-~-~~~~-~~~~~i~~~~-----~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~----~~~~ 140 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSS-F-EEIA-SFREQILRVK-----DKDRVPMILVGNKCDLDSERQVSTGEGQEL----AKSF 140 (189)
T ss_pred HhhcCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHhc-----CCCCCCEEEEEECcccccccccCHHHHHHH----HHHh
Confidence 3457899999999988431 1 1122 2222222211 11346899999999986432 222223333 2334
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++++..|.+.
T Consensus 141 ~~----~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 141 GI----PFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred CC----EEEEeeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999888654
No 160
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.59 E-value=1.3e-07 Score=91.71 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.++. . ...+..++..... ....|+++|+||+||.+... .......+ .+.+
T Consensus 74 ~~~~~d~~llv~d~~~~~-----s-~~~~~~~~~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~ 138 (169)
T cd01892 74 ELAACDVACLVYDSSDPK-----S-FSYCAEVYKKYFM-----LGEIPCLFVAAKADLDEQQQRYEVQPDEF----CRKL 138 (169)
T ss_pred hhhcCCEEEEEEeCCCHH-----H-HHHHHHHHHHhcc-----CCCCeEEEEEEcccccccccccccCHHHH----HHHc
Confidence 346899999999997742 1 1122233322100 12468999999999975432 11112232 3445
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. ..++.+||++|.|+++|++.|.+.
T Consensus 139 ~~---~~~~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 139 GL---PPPLHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred CC---CCCEEEEeccCccHHHHHHHHHHH
Confidence 53 236899999999999999988764
No 161
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.58 E-value=7e-07 Score=86.38 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=58.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... + ..+ ..++..+.... ...+.|+++|+||+||... .........|. +..
T Consensus 83 ~~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~----~~~ 150 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQS-F-LNV-RNWMSQLQTHA-----YCENPDIVLCGNKADLEDQRQVSEEQAKALA----DKY 150 (180)
T ss_pred HhCCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCcEEEEEeCccchhcCccCHHHHHHHH----HHc
Confidence 3467999999999987421 1 111 11222222210 1134689999999999754 23333344443 444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+ ++.+||++|.|++++++.|.+.
T Consensus 151 ~~~----~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 151 GIP----YFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred CCe----EEEEeCCCCCCHHHHHHHHHHH
Confidence 543 8999999999999999988753
No 162
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.58 E-value=6.3e-07 Score=89.78 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=60.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.++. ..+.. .+ .+..+... +.+|+++|+||+|+.........++. ++.+.+...
T Consensus 103 ~~~~~D~~llVvd~~~~~-~~~~t-~~-~l~~~~~~--------~~~~iiivvNK~Dl~~~~~~~~~~~~-i~~~~~~~~ 170 (203)
T cd01888 103 GAAVMDGALLLIAANEPC-PQPQT-SE-HLAALEIM--------GLKHIIIVQNKIDLVKEEQALENYEQ-IKKFVKGTI 170 (203)
T ss_pred hhhcCCEEEEEEECCCCC-CCcch-HH-HHHHHHHc--------CCCcEEEEEEchhccCHHHHHHHHHH-HHHHHhccc
Confidence 567799999999998741 11211 12 22223221 33578999999999754321111121 222222211
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.. ...++++||++|.|+++|++.|.+.++++
T Consensus 171 ~~-~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 171 AE-NAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred cC-CCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 11 23489999999999999999999877654
No 163
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.57 E-value=5.9e-07 Score=88.08 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+.. + ...+..++..... ......|+++|+||+|+.... ........| .+..
T Consensus 69 ~~~~~d~iilv~d~~~~~-s-----~~~i~~~~~~i~~---~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~----~~~~ 135 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQE-S-----FENLKFWINEINR---YARENVIKVIVANKSDLVNNKVVDSNIAKSF----CDSL 135 (188)
T ss_pred HccCCCEEEEEEECcCHH-H-----HHHHHHHHHHHHH---hCCCCCeEEEEEECCCCcccccCCHHHHHHH----HHHc
Confidence 456799999999998743 1 1222233332211 111346899999999998433 222233333 2344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++++..|...
T Consensus 136 ~~----~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 136 NI----PFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred CC----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 38899999999999999888754
No 164
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.57 E-value=2.1e-06 Score=82.21 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=57.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|.|+.+.... ..+...+ ..+..... .......|+++|+||+|+.........+..|. +.++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~-~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 144 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSF--QNLSNWK-KEFIYYAD--VKEPESFPFVVLGNKNDIPERQVSTEEAQAWC----RENG 144 (170)
T ss_pred HhcCCCEEEEEEECCCHHHH--HhHHHHH-HHHHHhcc--cccCCCCcEEEEEECccccccccCHHHHHHHH----HHCC
Confidence 34568999999998874311 1111111 22211100 00012458999999999975554444455553 3444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
...++.+||++|.|+.++++.+.+
T Consensus 145 ---~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 145 ---DYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred ---CCeEEEEECCCCCCHHHHHHHHHh
Confidence 234889999999999999988764
No 165
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.56 E-value=6.2e-07 Score=103.76 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=86.1
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchh-HHHHHHHHh
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFD-FDRVIATRL 282 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d-~~~~L~~~l 282 (666)
.+.+|.+|+|||+| +++.+......... +..+.+..+...+ + .++... -.-+.+|+++ |.+.|..
T Consensus 3 I~iiG~~d~GKTTLi~aLtg~~~d~~~eE-------~~rGiTid~~~~~-~-~~~~~~--v~~iDtPGhe~f~~~~~~-- 69 (581)
T TIGR00475 3 IATAGHVDHGKTTLLKALTGIAADRLPEE-------KKRGMTIDLGFAY-F-PLPDYR--LGFIDVPGHEKFISNAIA-- 69 (581)
T ss_pred EEEECCCCCCHHHHHHHHhCccCcCChhH-------hcCCceEEeEEEE-E-EeCCEE--EEEEECCCHHHHHHHHHh--
Confidence 35689999997755 99987542211111 1122222221110 0 111100 0012247754 3333322
Q ss_pred cCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHH
Q 005972 283 MKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA 362 (666)
Q Consensus 283 ~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~ 362 (666)
....+|++++|+|+.+ |..+... +. +..+... +.+++|+|+||+|+++... ...+...++.+.
T Consensus 70 ----g~~~aD~aILVVDa~~--G~~~qT~-eh-l~il~~l--------gi~~iIVVlNK~Dlv~~~~-~~~~~~ei~~~l 132 (581)
T TIGR00475 70 ----GGGGIDAALLVVDADE--GVMTQTG-EH-LAVLDLL--------GIPHTIVVITKADRVNEEE-IKRTEMFMKQIL 132 (581)
T ss_pred ----hhccCCEEEEEEECCC--CCcHHHH-HH-HHHHHHc--------CCCeEEEEEECCCCCCHHH-HHHHHHHHHHHH
Confidence 4567999999999987 3334321 22 2233321 2334999999999986432 111223333333
Q ss_pred HhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+..+......++++||++|.|+++|...|..++
T Consensus 133 ~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 133 NSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 343321123599999999999999998886653
No 166
>PLN03118 Rab family protein; Provisional
Probab=98.55 E-value=4.4e-07 Score=91.03 Aligned_cols=161 Identities=16% Similarity=0.042 Sum_probs=84.8
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHH
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIAT 280 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~ 280 (666)
.|-.++||++|+|||+| +++...+..... +. ......+.... ..+.... -.-+.+|+.+....+..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t-------~~~~~~~~~~~---~~~~~~~-l~l~Dt~G~~~~~~~~~ 80 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLA--PT-------IGVDFKIKQLT---VGGKRLK-LTIWDTAGQERFRTLTS 80 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CC-------ceeEEEEEEEE---ECCEEEE-EEEEECCCchhhHHHHH
Confidence 46677899999997766 888776532110 00 00001111111 0110000 00012365443333433
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHH
Q 005972 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVR 359 (666)
Q Consensus 281 ~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~ 359 (666)
. ...++|.+|+|+|+.+... + ..+...+...+.... .....|+++|+||+||..... .......
T Consensus 81 ~-----~~~~~d~~vlv~D~~~~~s-f-~~~~~~~~~~~~~~~-----~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~--- 145 (211)
T PLN03118 81 S-----YYRNAQGIILVYDVTRRET-F-TNLSDVWGKEVELYS-----TNQDCVKMLVGNKVDRESERDVSREEGMA--- 145 (211)
T ss_pred H-----HHhcCCEEEEEEECCCHHH-H-HHHHHHHHHHHHHhc-----CCCCCCEEEEEECccccccCccCHHHHHH---
Confidence 3 3457899999999987431 1 112222222222110 112357899999999975432 2122222
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+....+. .++.+||+++.|++++++.|...+
T Consensus 146 -~~~~~~~----~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 146 -LAKEHGC----LFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred -HHHHcCC----EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2234443 378999999999999999998664
No 167
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.55 E-value=1.3e-07 Score=92.36 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=72.2
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhH--
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQ-- 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~-- 475 (666)
..+|+++|.+|||||||+|+|++.... ..++..+|+|+++..+. .+.++.++||||+.......... ..-.
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~----~~~~~~~~~t~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~-~~~~~~ 90 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKL----ARTSKTPGRTQLINFFE--VNDGFRLVDLPGYGYAKVSKEEK-EKWQKL 90 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc----ccccCCCCcceEEEEEE--eCCcEEEEeCCCCccccCChhHH-HHHHHH
Confidence 358999999999999999999976421 12357899999876554 34578999999986543311100 0001
Q ss_pred --HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 476 --KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 476 --~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
.++.....++...|.++..+.+.......+..+.....++ +++.|+++.
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pv---iiv~nK~D~ 141 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPV---LIVLTKADK 141 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCE---EEEEECccc
Confidence 1111112345677888877655544443334443333443 344577775
No 168
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.55 E-value=7.8e-08 Score=100.63 Aligned_cols=62 Identities=34% Similarity=0.289 Sum_probs=49.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
.+|++||.||||||||.|.|+++....+ |..+-|||.-+..-..- ..+..++||||++.+..
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~v-----S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAV-----SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccc-----cccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 6899999999999999999999887655 68899998855432111 23789999999997764
No 169
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.55 E-value=9.7e-07 Score=85.97 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=54.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++|+|+|+.++.. ...+.+.+...+.. ... ...|++||+||+||..... ...+.. .++.
T Consensus 78 ~~~ad~ii~v~D~t~~~s--~~~~~~~l~~~~~~----~~~--~~~piilv~NK~Dl~~~~~-~~~i~~-------~~~~ 141 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDR--IDEAREELHRMLNE----DEL--RDAVILVFANKQDLPDAMK-AAEITE-------KLGL 141 (175)
T ss_pred hCCCCEEEEEEECCCHHH--HHHHHHHHHHHhhC----Hhh--cCCcEEEEEeCcCcccCCC-HHHHHH-------HhCc
Confidence 457999999999987431 11222222222221 111 3468999999999864322 112222 1221
Q ss_pred C----CcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 P----KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~----~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. +.-.++.+||++|.|++++++.|.+.
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 142 HSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred cccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1 12236679999999999999998764
No 170
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.55 E-value=2e-07 Score=88.90 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=56.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH-------H-HHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR-------L-DRWVR 359 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~-------L-~~wl~ 359 (666)
...+|++++|+|+.+... + ......++..+... . ...|+++|+||+|+......... + ..-..
T Consensus 69 ~~~~~~~i~v~d~~~~~s-~-~~~~~~~~~~~~~~------~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~ 139 (171)
T cd00157 69 YPNTDVFLICFSVDSPSS-F-ENVKTKWIPEIRHY------C-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGE 139 (171)
T ss_pred cCCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHH
Confidence 457899999999987421 1 11222223333321 1 24789999999999865431000 0 11111
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+....+ ...++.+||++|.|+++|+..|.+
T Consensus 140 ~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 140 KLAKEIG---AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHhC---CeEEEEeecCCCCCHHHHHHHHhh
Confidence 2223344 235899999999999999998864
No 171
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.54 E-value=3.1e-07 Score=90.30 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=53.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++|+|+|+.+... + ......+.+.+.. ... ..+|++||+||.|+..... ...+. ..++.
T Consensus 82 ~~~ad~iI~v~D~t~~~s-~-~~~~~~l~~~~~~----~~~--~~~piilv~NK~Dl~~~~~-~~~i~-------~~l~~ 145 (182)
T PTZ00133 82 YQNTNGLIFVVDSNDRER-I-GDAREELERMLSE----DEL--RDAVLLVFANKQDLPNAMS-TTEVT-------EKLGL 145 (182)
T ss_pred hcCCCEEEEEEeCCCHHH-H-HHHHHHHHHHHhC----Hhh--cCCCEEEEEeCCCCCCCCC-HHHHH-------HHhCC
Confidence 457999999999987431 1 1122222222221 111 2468999999999854322 11121 12222
Q ss_pred CCc----ceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKL----NGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~----~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
..+ -.++.+||++|.|++++++.|.+.+
T Consensus 146 ~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 146 HSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 111 1255689999999999999987643
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.53 E-value=2.9e-07 Score=87.04 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=72.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCCh-hhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNR-DEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~-~~~~ 476 (666)
.+|+++|.+|+|||||+|+|++...... +..|+||++......... ..+.++||||+.........+.. ....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~ 77 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIV-----SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLR 77 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceec-----cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHH
Confidence 4799999999999999999997653332 467899888654332222 35789999999866432221110 0112
Q ss_pred HHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
........+...+.++..+......+..+..+.....++ +++.|++++.
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~---iiv~nK~Dl~ 126 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKAL---VIVVNKWDLV 126 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCE---EEEEeccccC
Confidence 223345667788888876654433332223332223343 3456777654
No 173
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.53 E-value=2.6e-07 Score=94.94 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=37.4
Q ss_pred CcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.|+++|+||+|+++... +..| .+. ..++++||++|+|+++|++.|.+.+.
T Consensus 177 ~p~iiV~NK~Dl~~~~~----~~~~----~~~------~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 177 IPCLYVYNKIDLISIEE----LDLL----ARQ------PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEECccCCCHHH----HHHH----hcC------CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 58999999999975432 3332 111 13889999999999999999987654
No 174
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.53 E-value=1.3e-06 Score=85.31 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-----CChHHHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-----VSPTRLDRWVRHR 361 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-----~~~~~L~~wl~~~ 361 (666)
....+|++++|+|+.+.. ++ ..+...++..+... . ...|+|+|+||+||.+.. ........|
T Consensus 69 ~~~~ad~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~---- 135 (187)
T cd04132 69 SYPDVDVLLICYAVDNPT-SL-DNVEDKWFPEVNHF------C-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV---- 135 (187)
T ss_pred hCCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEEeChhhhhCccccCCcCHHHHHHH----
Confidence 456799999999998743 11 11111122222211 1 346899999999997542 112223333
Q ss_pred HHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 362 AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 362 ~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+..+. ..++.+||++|.|+++++..+...
T Consensus 136 ~~~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 136 AKKQGA---FAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred HHHcCC---cEEEEccCCCCCCHHHHHHHHHHH
Confidence 344452 248999999999999999888754
No 175
>CHL00071 tufA elongation factor Tu
Probab=98.52 E-value=4.7e-07 Score=100.47 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=80.3
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHH-------HHHHHhhhcCCceeecc-cccceecceecccccccc---cC
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKK-------KAREAQKEKGEVTVCAR-CHSLRNYGQVKNEVAENL---IP 270 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~-------~a~~a~~~~~~~~vCqR-C~rLr~ygkv~~~~~~~~---iP 270 (666)
...+++|++|+|||+| ++|.+....+..++. +.. .+++++.+..+.. ++.. ...++. .|
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~-~e~~rg~T~~~~~~~~~~--------~~~~~~~iDtP 83 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAP-EEKARGITINTAHVEYET--------ENRHYAHVDCP 83 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCCh-hhhcCCEeEEccEEEEcc--------CCeEEEEEECC
Confidence 4567899999997655 999986432211111 000 1111222222211 1111 111222 37
Q ss_pred chh-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 271 DFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 271 ~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
++. |.+.+ .+ ++..+|++++|||+.. |..++ ...++..+... +.+.+|+|+||+|+++...
T Consensus 84 Gh~~~~~~~----~~--~~~~~D~~ilVvda~~--g~~~q--t~~~~~~~~~~--------g~~~iIvvvNK~D~~~~~~ 145 (409)
T CHL00071 84 GHADYVKNM----IT--GAAQMDGAILVVSAAD--GPMPQ--TKEHILLAKQV--------GVPNIVVFLNKEDQVDDEE 145 (409)
T ss_pred ChHHHHHHH----HH--HHHhCCEEEEEEECCC--CCcHH--HHHHHHHHHHc--------CCCEEEEEEEccCCCCHHH
Confidence 753 22222 33 5678999999999987 33332 23334444332 2233788999999986443
Q ss_pred ChHHHHHHHHHHHHhCCCCC-cceEEEEecccCcC
Q 005972 350 SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLG 383 (666)
Q Consensus 350 ~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~G 383 (666)
..+.+..-++.+.+..+++. ...++++||.+|++
T Consensus 146 ~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 146 LLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 22223333344444555321 23488999999874
No 176
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.52 E-value=9.9e-07 Score=94.82 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=45.9
Q ss_pred CCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHH-HHHhhcCCCccEEEEe
Q 005972 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA-FIKELAGPRGNVWVIG 405 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~-~I~~~l~~~~~v~vvG 405 (666)
.+|+|+|+||+|+..... +..+++ .... +..++++||+.+.++++|.+ .|.+++|++...-+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~---~~~~---~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLR---LKYP---DEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHH---hhCC---CCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 469999999999753322 222222 2222 45699999999999999998 6999999875555554
No 177
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.52 E-value=9.6e-07 Score=102.69 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=87.1
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeec-ccccceecceecccccccccCchh-HHHHHHH
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCA-RCHSLRNYGQVKNEVAENLIPDFD-FDRVIAT 280 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCq-RC~rLr~ygkv~~~~~~~~iP~~d-~~~~L~~ 280 (666)
+.+.+|.+|+|||+| +++.+........ .++++.+.... .++... -+.. -.-+..|++. |.+.|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~e-------E~~rGiTI~l~~~~~~~~-~g~~---i~~IDtPGhe~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPE-------EKKRGMTIDLGYAYWPQP-DGRV---LGFIDVPGHEKFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchh-------cccCCceEEeeeEEEecC-CCcE---EEEEECCCHHHHHHHHHH
Confidence 345689999997766 8888754221110 01122222111 111000 0000 0012247763 3333332
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH
Q 005972 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH 360 (666)
Q Consensus 281 ~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~ 360 (666)
....+|++++|||+.+ |..++. ...+..+... +.+++|+|+||+|++++..... +..-++.
T Consensus 71 ------g~~~~D~~lLVVda~e--g~~~qT--~ehl~il~~l--------gi~~iIVVlNKiDlv~~~~~~~-v~~ei~~ 131 (614)
T PRK10512 71 ------GVGGIDHALLVVACDD--GVMAQT--REHLAILQLT--------GNPMLTVALTKADRVDEARIAE-VRRQVKA 131 (614)
T ss_pred ------HhhcCCEEEEEEECCC--CCcHHH--HHHHHHHHHc--------CCCeEEEEEECCccCCHHHHHH-HHHHHHH
Confidence 4677999999999987 333432 2223333321 2344689999999986432111 1111222
Q ss_pred HHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+....+.. ...+++|||++|.|+++|++.|.++..
T Consensus 132 ~l~~~~~~-~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 132 VLREYGFA-EAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHhcCCC-CCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 22333421 235999999999999999999987643
No 178
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.52 E-value=2.4e-07 Score=100.18 Aligned_cols=86 Identities=24% Similarity=0.179 Sum_probs=59.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-C-CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-P-AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~-~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
+|.+||.||||||||+|+|.... +.++++|+||++.......+ + ..+.++||||+........-| ...+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~------~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gL---g~~f 230 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK------PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGL---GHRF 230 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC------CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccH---HHHH
Confidence 79999999999999999998643 23468999999976543333 2 368999999997544321111 2233
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
+.-....+...|+++..
T Consensus 231 lrhie~a~vlI~ViD~s 247 (335)
T PRK12299 231 LKHIERTRLLLHLVDIE 247 (335)
T ss_pred HHHhhhcCEEEEEEcCC
Confidence 33345566778888764
No 179
>PRK09866 hypothetical protein; Provisional
Probab=98.51 E-value=5.9e-07 Score=102.79 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=67.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
++.++|+|++|||+....+ ..++.+++.|++.. +..|+++|+||+|+..... ....+..+++......
T Consensus 255 qL~eADvVLFVVDat~~~s----~~DeeIlk~Lkk~~-------K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~ 323 (741)
T PRK09866 255 QLARASAVLAVLDYTQLKS----ISDEEVREAILAVG-------QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKG 323 (741)
T ss_pred HHhhCCEEEEEEeCCCCCC----hhHHHHHHHHHhcC-------CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhc
Confidence 5678999999999987432 23455666665421 2248999999999974322 2345666665443333
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+ +..||+|||++|.|++.|++.|...
T Consensus 324 ~i~-f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 324 CIT-PQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCC-CceEEEEeCCCCCCHHHHHHHHHhC
Confidence 332 7889999999999999999999874
No 180
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.51 E-value=6.4e-07 Score=90.38 Aligned_cols=92 Identities=26% Similarity=0.337 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.++. ++ ..+..++..... .......|+++|.||+|+.... ........+ .+.+
T Consensus 72 ~~~~~d~iilv~D~~~~~-Sf-----~~l~~~~~~i~~--~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~ 139 (211)
T cd04111 72 YYRNSVGVLLVFDITNRE-SF-----EHVHDWLEEARS--HIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDL 139 (211)
T ss_pred HhcCCcEEEEEEECCCHH-HH-----HHHHHHHHHHHH--hcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHh
Confidence 345789999999998843 11 112233332111 0011245789999999997643 233333333 3444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 140 ~~----~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 140 GM----KYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 38899999999999999998764
No 181
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.51 E-value=1.3e-06 Score=83.83 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=53.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.+.. + .......+...+.... ....|+++|+||+|+..... +.... +.++.
T Consensus 79 ~~~~~~ii~v~D~~~~~-~-~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~----~~~i~----~~l~~ 142 (173)
T cd04155 79 FENTDCLIYVIDSADKK-R-LEEAGAELVELLEEEK------LAGVPVLVFANKQDLATAAP----AEEIA----EALNL 142 (173)
T ss_pred hcCCCEEEEEEeCCCHH-H-HHHHHHHHHHHHhChh------hcCCCEEEEEECCCCccCCC----HHHHH----HHcCC
Confidence 45689999999998732 1 1112222222222110 12468999999999975433 22222 22222
Q ss_pred CC----cceEEEEecccCcChhhHHHHHHh
Q 005972 368 PK----LNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~----~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.. ...++.+||++|.|++++++.|.+
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 143 HDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 11 124778999999999999998853
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.51 E-value=3.5e-07 Score=102.67 Aligned_cols=93 Identities=23% Similarity=0.223 Sum_probs=61.8
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+.+|+++|.||||||||+|+|++..... +++.||||++.......++ ..+.++||||+..+......+ ...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-----v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~--gi~ 286 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI-----VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI--GIE 286 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc-----cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH--HHH
Confidence 45689999999999999999999765332 3589999999765543343 367999999997533211000 001
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...|+++....
T Consensus 287 ~~~~~~~~aD~il~VvD~s~~ 307 (449)
T PRK05291 287 RSREAIEEADLVLLVLDASEP 307 (449)
T ss_pred HHHHHHHhCCEEEEEecCCCC
Confidence 122345667777777776543
No 183
>PLN03110 Rab GTPase; Provisional
Probab=98.51 E-value=1.7e-06 Score=87.59 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=56.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....++.+++|+|+.+.. ++ ..+ ..++..+... .....|+++|+||+||..... ....... +....
T Consensus 81 ~~~~~~~~ilv~d~~~~~-s~-~~~-~~~~~~~~~~------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~----l~~~~ 147 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQ-TF-DNV-QRWLRELRDH------ADSNIVIMMAGNKSDLNHLRSVAEEDGQA----LAEKE 147 (216)
T ss_pred HhCCCCEEEEEEECCChH-HH-HHH-HHHHHHHHHh------CCCCCeEEEEEEChhcccccCCCHHHHHH----HHHHc
Confidence 345789999999998743 11 111 1222223221 113468999999999964332 2222222 23344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|...
T Consensus 148 ~~----~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 148 GL----SFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999888654
No 184
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.50 E-value=5.7e-07 Score=87.45 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=56.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+. .+...+.+.. .....|+++|+||+|+.... ........| .+..+
T Consensus 71 ~~~~d~~ilv~d~~~~~S-f-~~~~-~~~~~i~~~~-----~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----a~~~~ 138 (172)
T cd04141 71 MRCGEGFIICYSVTDRHS-F-QEAS-EFKKLITRVR-----LTEDIPLVLVGNKVDLESQRQVTTEEGRNL----AREFN 138 (172)
T ss_pred hhcCCEEEEEEECCchhH-H-HHHH-HHHHHHHHhc-----CCCCCCEEEEEEChhhhhcCccCHHHHHHH----HHHhC
Confidence 456899999999988542 1 1222 2223343321 11346899999999986432 332333333 23445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. .++.+||++|.|++++++.|..
T Consensus 139 ~----~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 139 C----PFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred C----EEEEEecCCCCCHHHHHHHHHH
Confidence 3 3889999999999999988764
No 185
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.50 E-value=2.3e-07 Score=104.78 Aligned_cols=87 Identities=22% Similarity=0.137 Sum_probs=59.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.+|.+||.||||||||||+|.+.. ..++++|+||++.+.....+. ..+.|+||||+.........| ...+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak------pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gL---g~~f 230 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK------PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGL---GLDF 230 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC------ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHH---HHHH
Confidence 479999999999999999998643 234789999998655332232 378999999997543211111 1223
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
+......+...|+++..
T Consensus 231 LrhieradvLv~VVD~s 247 (500)
T PRK12296 231 LRHIERCAVLVHVVDCA 247 (500)
T ss_pred HHHHHhcCEEEEEECCc
Confidence 33345567778888764
No 186
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.50 E-value=7.7e-07 Score=83.46 Aligned_cols=91 Identities=22% Similarity=0.156 Sum_probs=56.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
....+.+++|+|...... .....+..++.. ...|+++|+||+|++....... ...-++...+....
T Consensus 79 ~~~~~~~~~v~d~~~~~~----~~~~~~~~~l~~---------~~~~vi~v~nK~D~~~~~~~~~-~~~~~~~~l~~~~~ 144 (170)
T cd01876 79 RENLKGVVLLIDSRHGPT----EIDLEMLDWLEE---------LGIPFLVVLTKADKLKKSELAK-ALKEIKKELKLFEI 144 (170)
T ss_pred ChhhhEEEEEEEcCcCCC----HhHHHHHHHHHH---------cCCCEEEEEEchhcCChHHHHH-HHHHHHHHHHhccC
Confidence 346788999999976431 223334455554 2358999999999986543211 11111111111111
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...++++||+++.|++++++.|.++
T Consensus 145 --~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 --DPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHh
Confidence 2358999999999999999999764
No 187
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.50 E-value=9.5e-07 Score=84.84 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=58.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH---------HHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++++|+|+.+... + ..+...+...+... ....|+++|+||+||.+.......+ ...
T Consensus 68 ~~~~~~~~ilv~~~~~~~s-~-~~~~~~~~~~l~~~-------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (174)
T cd04135 68 SYPMTDVFLICFSVVNPAS-F-QNVKEEWVPELKEY-------APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQ 138 (174)
T ss_pred cCCCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh-------CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHH
Confidence 4567899999999987432 1 12222333444332 1356899999999997542211000 111
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+.+.+.++ ...++.+||++|.|++++++.+..
T Consensus 139 ~~~~~~~~~---~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 139 GQKLAKEIG---AHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHcC---CCEEEEecCCcCCCHHHHHHHHHH
Confidence 222334455 234889999999999999988764
No 188
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.50 E-value=1.1e-06 Score=84.91 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=55.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++|+|+|+.+... + ..+ ..++..+.+. . ...|+++|+||+|+....... ....+ .+..+
T Consensus 70 ~~~~d~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~------~-~~~piiiv~nK~Dl~~~~~~~-~~~~~----~~~~~- 133 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVT-Y-KNV-PNWHRDLVRV------C-GNIPIVLCGNKVDIKDRKVKA-KQITF----HRKKN- 133 (166)
T ss_pred hcCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHh------C-CCCcEEEEEEchhcccccCCH-HHHHH----HHHcC-
Confidence 356899999999987431 1 111 1222333321 1 257899999999997433321 11222 22222
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
..++.+||++|.|++++++.|.+.+
T Consensus 134 ---~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 134 ---LQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ---CEEEEEeCCCCCChHHHHHHHHHHH
Confidence 2489999999999999999987653
No 189
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.49 E-value=1.9e-06 Score=84.88 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=56.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC--ChHHHHHHHHHHHHh
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV--SPTRLDRWVRHRAKA 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~--~~~~L~~wl~~~~k~ 364 (666)
...++|++++|+|+.+... + ..+. ..+..+.+. .....| |+|+||+||..... ....+....+.+++.
T Consensus 69 ~~~~a~~iilv~D~t~~~s-~-~~i~-~~~~~~~~~------~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~ 138 (182)
T cd04128 69 VCNDAVAILFMFDLTRKST-L-NSIK-EWYRQARGF------NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA 138 (182)
T ss_pred HCcCCCEEEEEEECcCHHH-H-HHHH-HHHHHHHHh------CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH
Confidence 4568999999999988431 1 1111 222223221 112345 78999999964211 111122333444455
Q ss_pred CCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+. .++.+||++|.|+++|++.|.+.
T Consensus 139 ~~~----~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 139 MKA----PLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred cCC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 553 38899999999999999988654
No 190
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.48 E-value=2.7e-07 Score=98.26 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=50.9
Q ss_pred hhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005972 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 384 veeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
+-+|+..|.+.-....+|+++|.+||||||++|+|++.....+ |..+++|.......... +..+.+|||||+..
T Consensus 24 l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~v-----s~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 24 LLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATV-----SAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred HHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccc-----cCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 3444444444433456899999999999999999998765433 45666554433322222 34789999999987
Q ss_pred CC
Q 005972 463 PH 464 (666)
Q Consensus 463 ~~ 464 (666)
..
T Consensus 99 ~~ 100 (313)
T TIGR00991 99 GG 100 (313)
T ss_pred hH
Confidence 54
No 191
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.48 E-value=4.4e-07 Score=86.58 Aligned_cols=88 Identities=22% Similarity=0.158 Sum_probs=55.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CC-ceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PA-KAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~-~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
+|++||.+|||||||+|+|.+... .++..||+|++.......+ +. ++.++||||+.........+ ...+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~---~~~~ 72 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGL---GHRF 72 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc------cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCc---hHHH
Confidence 689999999999999999986432 3457788887643222112 22 67899999985332211111 1222
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
.......+...+.++....
T Consensus 73 ~~~~~~~d~vi~v~D~~~~ 91 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGD 91 (170)
T ss_pred HHHHHhCCEEEEEEecCCC
Confidence 2333456777888877543
No 192
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.47 E-value=3.6e-07 Score=101.62 Aligned_cols=86 Identities=20% Similarity=0.113 Sum_probs=60.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.|++||.||||||||||+|++.. .+++++|+||+.+......++ ..+.++||||+.........| ...+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak------~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gL---g~~f 230 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK------PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGL---GHQF 230 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC------CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchH---HHHH
Confidence 79999999999999999999653 234689999998765432233 478999999997533221111 2233
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
+.-....+...|+++..
T Consensus 231 Lrhier~~llI~VID~s 247 (424)
T PRK12297 231 LRHIERTRVIVHVIDMS 247 (424)
T ss_pred HHHHhhCCEEEEEEeCC
Confidence 44455677888888864
No 193
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.47 E-value=1.6e-06 Score=83.32 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=57.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH-------HH--
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD-------RW-- 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~-------~w-- 357 (666)
...++|++++|.|+.+... + ..+...+...++.. . ...|+++|+||+|+.+.......+. .|
T Consensus 69 ~~~~~d~~i~v~~~~~~~s-~-~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~ 139 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDS-L-ENIPEKWTPEVKHF------C-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 139 (175)
T ss_pred ccCCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHH
Confidence 4567899999999987431 1 12222222333321 1 3468999999999875432111110 01
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+.+.+..+ ...++.+||++|.|+++|+..|...
T Consensus 140 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 140 GRDMANKIG---AFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHcC---CcEEEEeccccCcCHHHHHHHHHHH
Confidence 112223333 2358999999999999999998754
No 194
>PRK00049 elongation factor Tu; Reviewed
Probab=98.47 E-value=1.8e-06 Score=95.41 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEE-EEEECCCCCCCCCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLV-LVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvI-LVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+ |..+. ...++..+.. ...|++ +++||+|+.++....+.+...++.+....
T Consensus 95 ~~~~aD~~llVVDa~~--g~~~q--t~~~~~~~~~---------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 95 GAAQMDGAILVVSAAD--GPMPQ--TREHILLARQ---------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred hhccCCEEEEEEECCC--CCchH--HHHHHHHHHH---------cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 5678999999999987 32332 2334444443 224655 68999999863332222333344444555
Q ss_pred CCC-CcceEEEEecccCc----------ChhhHHHHHHhhc
Q 005972 366 GAP-KLNGVYLVSARKDL----------GVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~-~~~~V~~VSAkkg~----------GveeLl~~I~~~l 395 (666)
+++ ....++++||.++. |+..|++.|....
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 542 12348899999875 4567777777654
No 195
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.47 E-value=2.2e-06 Score=84.06 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=54.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ...+...+ ..+.... .....|+++|+||+|+.... ....+..++.. ...+.
T Consensus 73 ~~~~d~ii~v~D~~~~~~--~~~~~~~~-~~i~~~~-----~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~--~~~~~ 141 (183)
T cd04152 73 TRCTDGIVFVVDSVDVER--MEEAKTEL-HKITRFS-----ENQGVPVLVLANKQDLPNAL-SVSEVEKLLAL--HELSA 141 (183)
T ss_pred hccCCEEEEEEECCCHHH--HHHHHHHH-HHHHhhh-----hcCCCcEEEEEECcCccccC-CHHHHHHHhCc--cccCC
Confidence 457999999999988421 11111111 1121110 11346899999999986432 22223332210 11111
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.....++++||++|.|+++|+..|.+.
T Consensus 142 ~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 142 STPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred CCceEEEEeecccCCCHHHHHHHHHHH
Confidence 011247899999999999999988754
No 196
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.46 E-value=2.4e-07 Score=100.83 Aligned_cols=87 Identities=30% Similarity=0.269 Sum_probs=59.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCC--CCcccccCChhh
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLH--PHLMSMRLNRDE 474 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~--~~~~~~~L~~~~ 474 (666)
.+|++||+||||||||+|+|++.. .. +++.||||++.......++ ..+.++||||+.. |.... +.-
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~~-----v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~li----e~f 259 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-VY-----AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELV----AAF 259 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ee-----eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHH----HHH
Confidence 579999999999999999999864 22 2578999998765444443 3689999999953 22110 111
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
..........+...++++...
T Consensus 260 ~~tle~~~~ADlil~VvD~s~ 280 (351)
T TIGR03156 260 RATLEEVREADLLLHVVDASD 280 (351)
T ss_pred HHHHHHHHhCCEEEEEEECCC
Confidence 122233556677888887654
No 197
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.46 E-value=2.4e-07 Score=86.59 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=68.7
Q ss_pred EEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-hHHHHH
Q 005972 402 WVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-EQKMVE 479 (666)
Q Consensus 402 ~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~~~~~~ 479 (666)
+++|.+|||||||+|+|++..... .+..|++|++......... ..+.++||||+..... .+... ......
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-----VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-----ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHH
Confidence 378999999999999999764322 2577899987655443332 3578999999975433 01000 111223
Q ss_pred hhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 480 IRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
..+..+...|.++..+....-....+..++....++ +.+.|+++..
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi---iiv~nK~D~~ 118 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPV---ILVVNKVDNI 118 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCE---EEEEECcccC
Confidence 346677788888876544333332233343333443 3455666653
No 198
>PRK12735 elongation factor Tu; Reviewed
Probab=98.46 E-value=1.8e-06 Score=95.49 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=85.6
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhh-----h--HHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cC
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKL-----S--KAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IP 270 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~-----s--i~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP 270 (666)
--..+++|.+|.|||+| ++|.+.-. + ......+.. .+++++.+..+...+ | .....++. .|
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~-~E~~rGiT~~~~~~~----~---~~~~~~i~~iDtP 83 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAP-EEKARGITINTSHVE----Y---ETANRHYAHVDCP 83 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCCh-hHHhcCceEEEeeeE----E---cCCCcEEEEEECC
Confidence 34567899999997766 98986311 0 000000110 111233333332111 1 01111222 37
Q ss_pred chhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEECCCCCCCCC
Q 005972 271 DFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPSQV 349 (666)
Q Consensus 271 ~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk~~ 349 (666)
++. .++ ....+ ++..+|++++|+|+.+. ..++. ..++..+.. ...| +|+|+||+|+++...
T Consensus 84 Gh~--~f~-~~~~~--~~~~aD~~llVvda~~g--~~~qt--~e~l~~~~~---------~gi~~iivvvNK~Dl~~~~~ 145 (396)
T PRK12735 84 GHA--DYV-KNMIT--GAAQMDGAILVVSAADG--PMPQT--REHILLARQ---------VGVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred CHH--HHH-HHHHh--hhccCCEEEEEEECCCC--CchhH--HHHHHHHHH---------cCCCeEEEEEEecCCcchHH
Confidence 763 222 22333 56789999999999873 22221 223333332 2235 446899999985433
Q ss_pred ChHHHHHHHHHHHHhCCCCC-cceEEEEecccCc----------ChhhHHHHHHhhcC
Q 005972 350 SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDL----------GVRNLLAFIKELAG 396 (666)
Q Consensus 350 ~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~----------GveeLl~~I~~~l~ 396 (666)
....+..-++.+.+..+... ...++++||.+|+ ++..|++.|.+.++
T Consensus 146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 22222222333344444311 1348999999985 56677777766543
No 199
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.46 E-value=1.3e-06 Score=85.82 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=54.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|.+|+|+|+.+... + ..+ ...+......... ...|++||+||+|+..... .... .+.++.
T Consensus 82 ~~~a~~iI~V~D~s~~~s-~-~~~----~~~l~~~l~~~~~--~~~piilv~NK~Dl~~~~~----~~~~----~~~l~l 145 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDR-V-VEA----RDELHRMLNEDEL--RDAVLLVFANKQDLPNAMN----AAEI----TDKLGL 145 (181)
T ss_pred hccCCEEEEEEeCCcHHH-H-HHH----HHHHHHHhcCHhh--CCCCEEEEEECCCCCCCCC----HHHH----HHHhCc
Confidence 457899999999988431 1 111 1223222110111 3468999999999864322 1221 123343
Q ss_pred CCc----ceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKL----NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~----~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..+ -.++.+||++|.|++++++.|.+.
T Consensus 146 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred cccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 211 124568999999999999998764
No 200
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.45 E-value=3.1e-06 Score=76.41 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=53.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.++.. .......+...+... .....|+++|+||+|+.+........ ..........
T Consensus 66 ~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~- 134 (157)
T cd00882 66 YRGADGIILVYDVTDRES--FENVKEWLLLILINK------EGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELG- 134 (157)
T ss_pred hcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhh------ccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcC-
Confidence 457899999999987431 111111100111111 11457899999999998665422111 0111112222
Q ss_pred CCcceEEEEecccCcChhhHHHHHH
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
..++.+|+.++.|++++++.|.
T Consensus 135 ---~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 135 ---VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ---CcEEEEecCCCCChHHHHHHHh
Confidence 3489999999999999998875
No 201
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.45 E-value=2.2e-06 Score=83.15 Aligned_cols=96 Identities=21% Similarity=0.193 Sum_probs=56.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... + ..+ ..++..+.+. ...+..|+++|.||+||.+..... ....-...+.+.++
T Consensus 69 ~~~~ad~~ilv~d~~~~~s-~-~~~-~~~~~~~~~~-----~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~ 139 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVAS-L-EHT-RQWLEDALKE-----NDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQ 139 (170)
T ss_pred HhcCCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh-----cCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcC
Confidence 3567999999999977321 1 111 1222222211 011235789999999997543210 01111112223444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. .++.+||++|.|+++|++.|..++
T Consensus 140 ~----~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 140 A----EYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred C----eEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 378899999999999999887653
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.44 E-value=2.2e-06 Score=82.37 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=55.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|+|+.+... + ... ..+...+.+.. .....|+++|+||+|+.+... .......+ .+..+
T Consensus 70 ~~~~~~~vlv~~~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piiiv~nK~D~~~~~~~~~~~~~~~----~~~~~ 137 (168)
T cd04177 70 IKSGQGFLLVYSVTSEAS-L-NEL-GELREQVLRIK-----DSDNVPMVLVGNKADLEDDRQVSREDGVSL----SQQWG 137 (168)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhh-----CCCCCCEEEEEEChhccccCccCHHHHHHH----HHHcC
Confidence 346889999999887431 1 111 12222222211 113468999999999975432 22222233 23334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
...++.+||++|.|++++++.|..
T Consensus 138 ---~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 138 ---NVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred ---CceEEEeeCCCCCCHHHHHHHHHH
Confidence 123889999999999999998875
No 203
>PRK12736 elongation factor Tu; Reviewed
Probab=98.44 E-value=2.2e-06 Score=94.70 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=59.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+ |..++. ..++..+... +.+.+|+|+||+|+++.+...+.+...++.+.+..+
T Consensus 95 ~~~~~d~~llVvd~~~--g~~~~t--~~~~~~~~~~--------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 95 GAAQMDGAILVVAATD--GPMPQT--REHILLARQV--------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHhhCCEEEEEEECCC--CCchhH--HHHHHHHHHc--------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999987 333322 2333333331 233367899999998543322223333344444444
Q ss_pred CC-CcceEEEEecccCc--------ChhhHHHHHHhhcC
Q 005972 367 AP-KLNGVYLVSARKDL--------GVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~-~~~~V~~VSAkkg~--------GveeLl~~I~~~l~ 396 (666)
+. ....++++||++|. ++..|++.|.++++
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 31 12358999999983 57888888887665
No 204
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.44 E-value=9.7e-07 Score=84.27 Aligned_cols=92 Identities=27% Similarity=0.288 Sum_probs=56.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + .. ...+...+.... ......|+++|+||+|+.... ........+ .+..+
T Consensus 69 ~~~~d~~i~v~d~~~~~s-~-~~-~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~ 137 (165)
T cd04146 69 IRWADGFVLVYSITDRSS-F-DE-ISQLKQLIREIK----KRDREIPVILVGNKADLLHYRQVSTEEGEKL----ASELG 137 (165)
T ss_pred HHhCCEEEEEEECCCHHH-H-HH-HHHHHHHHHHHh----cCCCCCCEEEEEECCchHHhCccCHHHHHHH----HHHcC
Confidence 456899999999987431 1 11 122333333311 001346899999999986432 222223333 23445
Q ss_pred CCCcceEEEEecccCc-ChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDL-GVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~-GveeLl~~I~~~ 394 (666)
. .++.+||++|. |+++++..|...
T Consensus 138 ~----~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 138 C----LFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred C----EEEEeCCCCCchhHHHHHHHHHHH
Confidence 3 37899999995 999999988754
No 205
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.44 E-value=2.4e-06 Score=87.24 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=56.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC--------------------C
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP--------------------S 347 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp--------------------k 347 (666)
..++|++|+|+|+.+... + ..+...+.. +.+. .....|+|||.||+||.. .
T Consensus 65 ~~~ad~~IlV~Dvt~~~S-f-~~l~~~~~~-l~~~------~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r 135 (220)
T cd04126 65 CRGAAAVILTYDVSNVQS-L-EELEDRFLG-LTDT------ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQR 135 (220)
T ss_pred hccCCEEEEEEECCCHHH-H-HHHHHHHHH-HHHh------cCCCCcEEEEEECcccccccccccccccccccccccccc
Confidence 457999999999998431 1 122222222 2221 113468999999999975 1
Q ss_pred CCChHHHHHHHHHHHHhCCC----------CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 348 QVSPTRLDRWVRHRAKAGGA----------PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~----------~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
....+....|.+ +.+. ..-...+.+||++|.|+++++..|.+.
T Consensus 136 ~v~~~e~~~~a~----~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 136 QVTLEDAKAFYK----RINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred cCCHHHHHHHHH----HhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 122233444432 2220 000247889999999999999888754
No 206
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.43 E-value=4.4e-06 Score=86.68 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhh---hhhhcCCCcEEEEEECCCCCC-CCCChHHHHHHHHHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDD---AKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~---~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k 363 (666)
..++|++++|+|+.+.. ++ +....+++.+...... ........|+|+|+||+||.. .......+..++. .
T Consensus 69 ~~~ad~iIlVfdv~~~~-Sf--~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~---~ 142 (247)
T cd04143 69 ILTGDVFILVFSLDNRE-SF--EEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG---G 142 (247)
T ss_pred hccCCEEEEEEeCCCHH-HH--HHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH---h
Confidence 45789999999998743 11 1112223333221000 000112468999999999975 3333333443321 1
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
..+ ..++.+||++|.|+++|++.|...+
T Consensus 143 ~~~----~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 143 DEN----CAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred cCC----CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 112 2489999999999999999998753
No 207
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.42 E-value=1.3e-06 Score=101.33 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|.+++|+|+.+.. ..... ..+..++. .+.|+|+|+||+|+..... . ...+.+.+.++
T Consensus 90 ~l~~aD~aILVvDat~g~--~~qt~-~~~~~~~~----------~~ipiIiViNKiDl~~~~~--~---~~~~el~~~lg 151 (595)
T TIGR01393 90 SLAACEGALLLVDAAQGI--EAQTL-ANVYLALE----------NDLEIIPVINKIDLPSADP--E---RVKKEIEEVIG 151 (595)
T ss_pred HHHhCCEEEEEecCCCCC--CHhHH-HHHHHHHH----------cCCCEEEEEECcCCCccCH--H---HHHHHHHHHhC
Confidence 456799999999998732 22221 12222111 2357999999999864321 1 11222223344
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.. ...++++||++|.|+++|++.|.+.+|.
T Consensus 152 ~~-~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 LD-ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CC-cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 32 3468999999999999999999887764
No 208
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.42 E-value=4.4e-07 Score=107.86 Aligned_cols=119 Identities=18% Similarity=0.078 Sum_probs=71.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.+|.++|.||||||||+|+|++... .++++||+|.+........+ ..+.++||||+..........+.++...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~------~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC------ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 4799999999999999999987542 24689999998765443333 3689999999976443221112222211
Q ss_pred HHh--hhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 478 VEI--RKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 478 ~~~--~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
... ....+...+.++..+.- ..+.....+.....++ +.+.|+++..
T Consensus 78 ~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPv---IvVlNK~Dl~ 125 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPC---IVALNMLDIA 125 (772)
T ss_pred HHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCE---EEEEEchhhh
Confidence 111 23567777788765411 1121122233333454 3456777764
No 209
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.40 E-value=7.1e-07 Score=96.38 Aligned_cols=88 Identities=23% Similarity=0.166 Sum_probs=59.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
-+|++||.||||||||+|+|.... ..++++|+||+........++ ..+.|+||||+.........+ ...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~------~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gL---g~~ 228 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK------PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGL---GHR 228 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC------ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccH---HHH
Confidence 379999999999999999998643 234688999988654332333 368999999997543321111 223
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
+..-....+...|+++...
T Consensus 229 flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISP 247 (329)
T ss_pred HHHHHHhhCEEEEEEcCcc
Confidence 3333456677888887653
No 210
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.40 E-value=1e-06 Score=82.09 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=57.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChh-hHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRD-EQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~-~~~ 476 (666)
.+++++|.+|+|||||+|+|++..... ++..||||++.......+.. .+.++||||+...... +... ...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---~~~~~~~~ 73 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-----VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE---IEKIGIER 73 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-----ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch---HHHHHHHH
Confidence 478999999999999999999765332 24789999887654333333 6789999998654321 1111 112
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
........+...+.++..+
T Consensus 74 ~~~~~~~~~~~v~v~d~~~ 92 (157)
T cd04164 74 AREAIEEADLVLFVIDASR 92 (157)
T ss_pred HHHHHhhCCEEEEEEECCC
Confidence 2233455666666666654
No 211
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.40 E-value=4.3e-06 Score=84.19 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... + ..+ ..++..++.. .....|++||.||+||.... ........|. +..
T Consensus 69 y~~~ad~iIlVfDvtd~~S-f-~~l-~~w~~~i~~~------~~~~~piilVgNK~DL~~~~~v~~~~~~~~a----~~~ 135 (202)
T cd04120 69 YYRSAKGIILVYDITKKET-F-DDL-PKWMKMIDKY------ASEDAELLLVGNKLDCETDREISRQQGEKFA----QQI 135 (202)
T ss_pred HhcCCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------CCCCCcEEEEEECcccccccccCHHHHHHHH----Hhc
Confidence 3457999999999998531 1 112 2222333321 11346899999999997432 2223333332 232
Q ss_pred -CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 -GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 -g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++++..|.+.
T Consensus 136 ~~~----~~~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 136 TGM----RFCEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred CCC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 32 37899999999999999888653
No 212
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.39 E-value=3.5e-06 Score=85.67 Aligned_cols=89 Identities=26% Similarity=0.195 Sum_probs=56.7
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCCCC
Q 005972 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 290 ~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~~ 368 (666)
++|++++|+|+.+... +. . ...++..+.... .....|+|+|+||+|+.+... ....... +....+.
T Consensus 72 ~ad~iilV~d~td~~S-~~-~-~~~~~~~l~~~~-----~~~~~piilV~NK~Dl~~~~~v~~~~~~~----~a~~~~~- 138 (221)
T cd04148 72 QGDAFVVVYSVTDRSS-FE-R-ASELRIQLRRNR-----QLEDRPIILVGNKSDLARSREVSVQEGRA----CAVVFDC- 138 (221)
T ss_pred CCCEEEEEEECCCHHH-HH-H-HHHHHHHHHHhc-----CCCCCCEEEEEEChhccccceecHHHHHH----HHHHcCC-
Confidence 7999999999998532 11 1 122333343321 013468999999999976432 2122222 2334443
Q ss_pred CcceEEEEecccCcChhhHHHHHHhh
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||+++.|+++|++.|...
T Consensus 139 ---~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 139 ---KFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred ---eEEEecCCCCCCHHHHHHHHHHH
Confidence 38899999999999999988754
No 213
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.39 E-value=6.7e-06 Score=78.69 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=56.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+.. ++ ..+..++..... ......|+++|.||+||.... ........ +.+..+
T Consensus 70 ~~~~~~~i~v~d~~~~~-sf-----~~~~~~~~~~~~---~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~----~~~~~~ 136 (161)
T cd04117 70 YRRAQGIFLVYDISSER-SY-----QHIMKWVSDVDE---YAPEGVQKILIGNKADEEQKRQVGDEQGNK----LAKEYG 136 (161)
T ss_pred hcCCcEEEEEEECCCHH-HH-----HHHHHHHHHHHH---hCCCCCeEEEEEECcccccccCCCHHHHHH----HHHHcC
Confidence 45789999999998742 11 122233332111 111346899999999997543 22222222 234444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ..+.+||++|.|+++++..|.+.
T Consensus 137 ~----~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 M----DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHhh
Confidence 3 37899999999999999988653
No 214
>PLN03108 Rab family protein; Provisional
Probab=98.39 E-value=5.2e-06 Score=83.58 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.++. ++ ..+. .++..+... .....|+++|+||+||.... ........|. +..+
T Consensus 76 ~~~ad~~vlv~D~~~~~-s~-~~l~-~~~~~~~~~------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 142 (210)
T PLN03108 76 YRGAAGALLVYDITRRE-TF-NHLA-SWLEDARQH------ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA----KEHG 142 (210)
T ss_pred hccCCEEEEEEECCcHH-HH-HHHH-HHHHHHHHh------cCCCCcEEEEEECccCccccCCCHHHHHHHH----HHcC
Confidence 45689999999998743 11 1111 122222211 11346899999999997543 2323334443 4445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. .++.+||+++.|+++++..+..
T Consensus 143 ~----~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 143 L----IFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHH
Confidence 3 3889999999999998876654
No 215
>PRK11058 GTPase HflX; Provisional
Probab=98.39 E-value=3.7e-07 Score=101.82 Aligned_cols=89 Identities=22% Similarity=0.124 Sum_probs=57.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC--ceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA--KAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.|++||+||||||||+|+|++.... +++.||||++.......++. .+.++||||+..... . .+-..-...
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp-~-~lve~f~~t 270 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVY------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP-H-DLVAAFKAT 270 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcee------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCC-H-HHHHHHHHH
Confidence 6899999999999999999975432 35789999987543333432 678999999953210 0 010111122
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...++++....
T Consensus 271 l~~~~~ADlIL~VvDaS~~ 289 (426)
T PRK11058 271 LQETRQATLLLHVVDAADV 289 (426)
T ss_pred HHHhhcCCEEEEEEeCCCc
Confidence 2334566778888887543
No 216
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.39 E-value=2.9e-06 Score=99.97 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccc---ccCchhHHH
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFDFDR 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP~~d~~~ 276 (666)
.....+++|++|+|||+| +++........+. .+.+.-. ..+... +.. ......+ .+|++.-..
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~----------~GiTq~i-~~~~v~-~~~-~~~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA----------GGITQKI-GAYEVE-FEY-KDENQKIVFLDTPGHEAFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccC----------Ccccccc-ceEEEE-EEe-cCCceEEEEEECCcHHHHH
Confidence 456678899999997755 8887655321110 0111000 011110 000 0001111 237764333
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.|... .+..+|++++|||+.+ |..+... + .+..+.. ...|+|+|+||+|+.... ...+..
T Consensus 310 ~mr~r-----g~~~aDiaILVVDA~d--Gv~~QT~-E-~I~~~k~---------~~iPiIVViNKiDl~~~~--~e~v~~ 369 (742)
T CHL00189 310 SMRSR-----GANVTDIAILIIAADD--GVKPQTI-E-AINYIQA---------ANVPIIVAINKIDKANAN--TERIKQ 369 (742)
T ss_pred HHHHH-----HHHHCCEEEEEEECcC--CCChhhH-H-HHHHHHh---------cCceEEEEEECCCccccC--HHHHHH
Confidence 33222 4567999999999987 4334321 1 2222322 345899999999997532 222333
Q ss_pred HHHHH---HHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 357 WVRHR---AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 357 wl~~~---~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
++..+ ...+|. ...++++||++|.|+++|++.|..+
T Consensus 370 eL~~~~ll~e~~g~--~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 370 QLAKYNLIPEKWGG--DTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred HHHHhccchHhhCC--CceEEEEECCCCCCHHHHHHhhhhh
Confidence 33221 122221 2348999999999999999988654
No 217
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.38 E-value=3.1e-06 Score=95.79 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=52.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+. ..++... .+..+... +.+++|+|+||+|++.... ....+...++.+.+.+
T Consensus 127 ~l~~aD~allVVDa~~G--~~~qt~~--~~~l~~~l--------g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~ 194 (474)
T PRK05124 127 GASTCDLAILLIDARKG--VLDQTRR--HSFIATLL--------GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQL 194 (474)
T ss_pred HHhhCCEEEEEEECCCC--ccccchH--HHHHHHHh--------CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhc
Confidence 45779999999999873 2222111 11222221 2357899999999985332 1112222222333344
Q ss_pred CCCCcceEEEEecccCcChhhHH
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl 388 (666)
+......++++||++|.|+.++.
T Consensus 195 ~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 195 PGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred CCCCCceEEEEEeecCCCccccc
Confidence 41113569999999999998653
No 218
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=5e-06 Score=84.45 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=55.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+|+|+|+.+.... ..+ ..++..+.+. . ...|++||+||+||.........+ .| .+..+.
T Consensus 83 ~~~~~~~ilvfD~~~~~s~--~~i-~~w~~~i~~~------~-~~~piilvgNK~Dl~~~~v~~~~~-~~----~~~~~~ 147 (219)
T PLN03071 83 YIHGQCAIIMFDVTARLTY--KNV-PTWHRDLCRV------C-ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNL 147 (219)
T ss_pred cccccEEEEEEeCCCHHHH--HHH-HHHHHHHHHh------C-CCCcEEEEEEchhhhhccCCHHHH-HH----HHhcCC
Confidence 4578999999999874311 111 1222323221 1 346899999999997544332222 22 233332
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..+.+||++|.|+++++..|.+.
T Consensus 148 ----~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 148 ----QYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred ----EEEEcCCCCCCCHHHHHHHHHHH
Confidence 37899999999999999888654
No 219
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.35 E-value=1.7e-06 Score=83.32 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=51.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHH--HHHHHh
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWV--RHRAKA 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl--~~~~k~ 364 (666)
...++|.+++|+|+.+.. ++ .... .++..... .. ...|+++|+||+|+..... ...+...+ ..+.++
T Consensus 64 ~~~~ad~ii~V~D~t~~~-s~-~~~~----~~l~~~~~---~~-~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~ 132 (164)
T cd04162 64 YLSGSQGLIFVVDSADSE-RL-PLAR----QELHQLLQ---HP-PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARG 132 (164)
T ss_pred HHhhCCEEEEEEECCCHH-HH-HHHH----HHHHHHHh---CC-CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCC
Confidence 356799999999998843 11 1111 22222111 01 3468999999999864332 12121111 111122
Q ss_pred CCCCCcceEEEEeccc------CcChhhHHHHHH
Q 005972 365 GGAPKLNGVYLVSARK------DLGVRNLLAFIK 392 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkk------g~GveeLl~~I~ 392 (666)
.+ -.++.+||++ +.|++++++.+.
T Consensus 133 ~~----~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 133 RR----WILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred Cc----eEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 22 2367788888 999999888764
No 220
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.34 E-value=6.8e-07 Score=90.41 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=40.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
+|+++|.+|+||||++|.|++....... ....+.|..+......+. ..+.+|||||+..+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~----~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSG----SSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeec----cccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 6899999999999999999998765432 123345555555444443 3789999999976654
No 221
>PLN03127 Elongation factor Tu; Provisional
Probab=98.34 E-value=3.4e-06 Score=94.76 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=55.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEECCCCCCCCCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+. ..++ .+.++..+... +.| +|+|+||+|++++....+.+...++.+...+
T Consensus 144 g~~~aD~allVVda~~g--~~~q--t~e~l~~~~~~---------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 144 GAAQMDGGILVVSAPDG--PMPQ--TKEHILLARQV---------GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred HHhhCCEEEEEEECCCC--Cchh--HHHHHHHHHHc---------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 34569999999999873 2332 23344444432 235 5789999999864332222333333333333
Q ss_pred CCC-CcceEEEEecc---cCcC-------hhhHHHHHHhhcC
Q 005972 366 GAP-KLNGVYLVSAR---KDLG-------VRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~-~~~~V~~VSAk---kg~G-------veeLl~~I~~~l~ 396 (666)
+++ ....++++||. +|.| +..|++.|.++++
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 431 01236777775 4544 5677787777654
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.33 E-value=4.6e-06 Score=84.60 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=51.8
Q ss_pred cccccCEEEEEEecCCCC-----CCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC---hHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFD-----GMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS---PTRLDRWV 358 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~-----gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~---~~~L~~wl 358 (666)
++..+|++++|||+.+.. +.... ..+ .+..+... +.+|+|+|+||+|+...... ...+...+
T Consensus 97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~~-~~~-~~~~~~~~--------~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l 166 (219)
T cd01883 97 GASQADVAVLVVDARKGEFEAGFEKGGQ-TRE-HALLARTL--------GVKQLIVAVNKMDDVTVNWSEERYDEIKKEL 166 (219)
T ss_pred HhhhCCEEEEEEECCCCccccccccccc-hHH-HHHHHHHc--------CCCeEEEEEEccccccccccHHHHHHHHHHH
Confidence 456799999999998842 11111 111 11222221 33688999999999853211 12233333
Q ss_pred HHHHHhCCCCC-cceEEEEecccCcChh
Q 005972 359 RHRAKAGGAPK-LNGVYLVSARKDLGVR 385 (666)
Q Consensus 359 ~~~~k~~g~~~-~~~V~~VSAkkg~Gve 385 (666)
+.+.+..+... -..++++||++|.|++
T Consensus 167 ~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 167 SPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 43445555321 1349999999999987
No 223
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.33 E-value=6.7e-06 Score=80.18 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH---------HH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD---------RW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~---------~w 357 (666)
....+|++|+|+|+.++. ++ ..+...++..+... . .+.|++||.||+||.+.......+. .-
T Consensus 69 ~~~~~d~~ilv~d~~~~~-sf-~~~~~~~~~~~~~~------~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~ 139 (174)
T cd01871 69 SYPQTDVFLICFSLVSPA-SF-ENVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 139 (174)
T ss_pred hcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHH
Confidence 456799999999998853 11 12212222333221 1 3468999999999965321111110 00
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
...+.+.++ ...++.+||++|.|++++++.+.+
T Consensus 140 ~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 140 GLAMAKEIG---AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHHHcC---CcEEEEecccccCCHHHHHHHHHH
Confidence 112233444 224789999999999999988864
No 224
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.33 E-value=4.3e-06 Score=96.73 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=60.4
Q ss_pred CchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|+++....|... ....+|++++|+|+.+ |..+.. ...+..++. .+.|+++|+||+|+.+...
T Consensus 77 pG~e~f~~l~~~-----~~~~aD~~IlVvD~~~--g~~~qt--~e~i~~l~~---------~~vpiIVv~NK~Dl~~~~~ 138 (590)
T TIGR00491 77 PGHEAFTNLRKR-----GGALADLAILIVDINE--GFKPQT--QEALNILRM---------YKTPFVVAANKIDRIPGWR 138 (590)
T ss_pred CCcHhHHHHHHH-----HHhhCCEEEEEEECCc--CCCHhH--HHHHHHHHH---------cCCCEEEEEECCCccchhh
Confidence 776544444332 3467999999999987 333332 122233332 3458999999999985321
Q ss_pred C-------------hHHH--------HHHHHHHHHhCCCC-----------CcceEEEEecccCcChhhHHHHHH
Q 005972 350 S-------------PTRL--------DRWVRHRAKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 350 ~-------------~~~L--------~~wl~~~~k~~g~~-----------~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
. ...+ ...+.++ .+.|+. ....++++||++|.|+++|+..|.
T Consensus 139 ~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l-~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~ 212 (590)
T TIGR00491 139 SHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKL-HEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA 212 (590)
T ss_pred hccCchHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence 0 0001 0001111 122221 123589999999999999998775
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=98.32 E-value=6.1e-06 Score=93.40 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=82.1
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHH------HHhhhcCCcee-ecccccceecceecccccccccCch-h
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAR------EAQKEKGEVTV-CARCHSLRNYGQVKNEVAENLIPDF-D 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~------~a~~~~~~~~v-CqRC~rLr~ygkv~~~~~~~~iP~~-d 273 (666)
...+++|.+|+|||+| ++|......+..+..... .++..++.+.. +..++...++ .+ .-+..|++ +
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~-~i----~liDtPGh~~ 156 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENR-HY----AHVDCPGHAD 156 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCc-EE----EEEECCCHHH
Confidence 4457799999997766 999976544433221100 01111233322 2222211111 00 01123765 3
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
|.+.|.. ++..+|++++|||+.+ |..++. +..+..+... +.+.+|+++||+|+++.+...+.
T Consensus 157 f~~~~~~------g~~~aD~ailVVda~~--G~~~qt--~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~ 218 (478)
T PLN03126 157 YVKNMIT------GAAQMDGAILVVSGAD--GPMPQT--KEHILLAKQV--------GVPNMVVFLNKQDQVDDEELLEL 218 (478)
T ss_pred HHHHHHH------HHhhCCEEEEEEECCC--CCcHHH--HHHHHHHHHc--------CCCeEEEEEecccccCHHHHHHH
Confidence 4444432 4567899999999987 444432 2233333321 23347889999999874332233
Q ss_pred HHHHHHHHHHhCCCCC-cceEEEEecccCcC
Q 005972 354 LDRWVRHRAKAGGAPK-LNGVYLVSARKDLG 383 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~G 383 (666)
+..-++.+.+..|++. -..++++||.+|++
T Consensus 219 i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 219 VELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 3333444455555421 23478999998854
No 226
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.31 E-value=1.5e-06 Score=99.84 Aligned_cols=63 Identities=32% Similarity=0.362 Sum_probs=46.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
..+|++||++||||||++|+|+++....+. +..|+||+- ..+.... +..+.||||||+.....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vs----s~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTD----AFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccccc----CCCCCceEE-EEEEEEECCceEEEEECCCCCcccc
Confidence 357999999999999999999987655432 234777764 3333333 34689999999997653
No 227
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.31 E-value=7e-06 Score=95.05 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=83.7
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccce--ecceecccccccccCchhHHHHH
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLR--NYGQVKNEVAENLIPDFDFDRVI 278 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr--~ygkv~~~~~~~~iP~~d~~~~L 278 (666)
....+++|.+|+|||+| +++.+.++...+. .+.+. -...+... .+..+. -+..|++.-...|
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~----------~GIT~-~ig~~~v~~~~~~~i~----~iDTPGhe~F~~~ 151 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA----------GGITQ-HIGAYHVENEDGKMIT----FLDTPGHEAFTSM 151 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccC----------Cceee-cceEEEEEECCCcEEE----EEECCCCcchhhH
Confidence 34567799999997755 9887765432111 01100 00001110 000110 0123776432233
Q ss_pred HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHH
Q 005972 279 ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWV 358 (666)
Q Consensus 279 ~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl 358 (666)
..+ ....+|++++|+|+.+ |..++... .+..++. .+.|+|+++||+|+... ....+..++
T Consensus 152 r~r-----ga~~aDiaILVVda~d--gv~~qT~e--~i~~~~~---------~~vPiIVviNKiDl~~~--~~e~v~~~L 211 (587)
T TIGR00487 152 RAR-----GAKVTDIVVLVVAADD--GVMPQTIE--AISHAKA---------ANVPIIVAINKIDKPEA--NPDRVKQEL 211 (587)
T ss_pred HHh-----hhccCCEEEEEEECCC--CCCHhHHH--HHHHHHH---------cCCCEEEEEECcccccC--CHHHHHHHH
Confidence 222 4567999999999987 44443321 1222222 34589999999999543 223344443
Q ss_pred HHH---HHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 359 RHR---AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 359 ~~~---~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
+.. ...++. ...++++||++|.|+++|++.|..
T Consensus 212 ~~~g~~~~~~~~--~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 212 SEYGLVPEDWGG--DTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHhhhhHHhcCC--CceEEEEECCCCCChHHHHHhhhh
Confidence 221 111221 124899999999999999988853
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.31 E-value=3e-06 Score=89.93 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=93.9
Q ss_pred CCCCCCCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCc
Q 005972 196 DDLDLDGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPD 271 (666)
Q Consensus 196 ~~~dl~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~ 271 (666)
...|.+.++..+-|+|||||| +++.+.+.|.-+++ -++| |.-.|-|.+......+. .|+
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-YPFT----------------TK~i~vGhfe~~~~R~QvIDTPG 224 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-YPFT----------------TKGIHVGHFERGYLRIQVIDTPG 224 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCC-CCcc----------------ccceeEeeeecCCceEEEecCCc
Confidence 356677888887799999955 55878877744332 2233 33334444332211111 243
Q ss_pred h-----hHHHHHHHHhcCcccc-cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC
Q 005972 272 F-----DFDRVIATRLMKPSGN-ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL 345 (666)
Q Consensus 272 ~-----d~~~~L~~~l~~P~al-~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL 345 (666)
. +-.+.+-+++.. ++ .-.++|+|++|.+..-|. +.+.-..|+..++... .+|+++|+||+|+.
T Consensus 225 lLDRPl~ErN~IE~qAi~--AL~hl~~~IlF~~D~Se~cgy-~lE~Q~~L~~eIk~~f--------~~p~v~V~nK~D~~ 293 (346)
T COG1084 225 LLDRPLEERNEIERQAIL--ALRHLAGVILFLFDPSETCGY-SLEEQISLLEEIKELF--------KAPIVVVINKIDIA 293 (346)
T ss_pred ccCCChHHhcHHHHHHHH--HHHHhcCeEEEEEcCccccCC-CHHHHHHHHHHHHHhc--------CCCeEEEEeccccc
Confidence 2 111233333332 32 347899999999986554 3333334455554422 25899999999998
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 346 PSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 346 pk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..+. ++....... ..| ......+|+.++.+++.+...+...
T Consensus 294 ~~e~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 294 DEEK----LEEIEASVL-EEG---GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred chhH----HHHHHHHHH-hhc---cccccceeeeehhhHHHHHHHHHHH
Confidence 6544 333222222 223 2235678999999999988887764
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.30 E-value=5e-06 Score=91.90 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=53.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+ |..++ ...++..+... +.+++|+|+||+|++++....+.+..-++.+.+..+
T Consensus 95 ~~~~~D~~ilVvda~~--g~~~q--t~e~l~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 95 GAAQMDGAILVVSATD--GPMPQ--TREHILLARQV--------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHhhCCEEEEEEECCC--CCcHH--HHHHHHHHHHc--------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999987 32232 22333333321 234455789999998643222222222333344444
Q ss_pred CCC-cceEEEEecccCc-C-------hhhHHHHHHhh
Q 005972 367 APK-LNGVYLVSARKDL-G-------VRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~-~~~V~~VSAkkg~-G-------veeLl~~I~~~ 394 (666)
... ...++++||.+|. | +..|++.|...
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 311 1348999999875 2 34555555543
No 230
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.30 E-value=5.7e-06 Score=91.53 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=43.1
Q ss_pred CCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhh-HHHHHHhhcCCCccEEE
Q 005972 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRN-LLAFIKELAGPRGNVWV 403 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gvee-Ll~~I~~~l~~~~~v~v 403 (666)
.+|+|+|+||+|+..... .+..+ .+. + +..++++||+.+.++++ |++.+.+++|.+...+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~---~l~~i----~~~-~---~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~ 278 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE---NIERL----KEE-K---YYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEI 278 (396)
T ss_pred CCCEEEEEEchhcccchH---HHHHH----Hhc-C---CCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCc
Confidence 379999999999764322 12322 121 3 45699999999999999 88888888887644443
No 231
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.29 E-value=1.1e-06 Score=83.88 Aligned_cols=84 Identities=25% Similarity=0.244 Sum_probs=53.5
Q ss_pred EEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCCcccccCChhhHHHHHh
Q 005972 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEI 480 (666)
Q Consensus 403 vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~ 480 (666)
++|.+|||||||+|+|++... .++..|+||++.......+ ...+.++||||+.........+. ..+...
T Consensus 1 iiG~~~~GKStll~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~---~~~~~~ 71 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLG---NQFLAH 71 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCcc---HHHHHH
Confidence 589999999999999997643 2247788888765433223 34679999999853222111111 123334
Q ss_pred hhhcCceeEEecCCC
Q 005972 481 RKELQPRTYRVKARQ 495 (666)
Q Consensus 481 ~kel~~~~f~l~~~~ 495 (666)
.+..+...+.++..+
T Consensus 72 ~~~~d~ii~v~d~~~ 86 (176)
T cd01881 72 IRRADAILHVVDASE 86 (176)
T ss_pred HhccCEEEEEEeccC
Confidence 455677777777644
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.29 E-value=7.6e-06 Score=90.87 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=57.2
Q ss_pred Cchh-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |.+.|.. ++..+|++++|||+.. |..++. +..+..+... +.+++|+|+||+|+....
T Consensus 88 PGh~~f~~~~~~------~~~~aD~allVVda~~--G~~~qt--~~~~~~~~~~--------~~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 88 PGHEQYTRNMAT------GASTADLAVLLVDARK--GVLEQT--RRHSYIASLL--------GIRHVVLAVNKMDLVDYD 149 (406)
T ss_pred CCHHHHHHHHHH------HHhhCCEEEEEEECCC--CCcccc--HHHHHHHHHc--------CCCcEEEEEEecccccch
Confidence 7753 4444432 4567999999999987 333322 1122222221 235689999999998543
Q ss_pred CC-hHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhH
Q 005972 349 VS-PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 349 ~~-~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeL 387 (666)
.. ...+...+..+.+..+.. -..++++||++|.|++++
T Consensus 150 ~~~~~~i~~~~~~~~~~~~~~-~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLGFR-DVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CccEEEeecccCCCCccc
Confidence 21 111222222333444532 124899999999998863
No 233
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.29 E-value=2.4e-06 Score=84.95 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=90.4
Q ss_pred eeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchh--------HH
Q 005972 205 PAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFD--------FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~sl-Ln~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d--------~~ 275 (666)
.++||+||+|||+ +|.|.+++...+.... ...+..|++-+......++. -+..|++. ..
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~--------~~~T~~~~~~~~~~~~~~i~----viDTPG~~d~~~~~~~~~ 70 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKLSA--------SSVTKTCQKESAVWDGRRVN----VIDTPGLFDTSVSPEQLS 70 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCCccccccCC--------CCcccccceeeEEECCeEEE----EEECcCCCCccCChHHHH
Confidence 3579999999665 5999999865333211 12233444322111000110 01124432 23
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+.|.+.+.. .....++|++|+|+.++. ..+..+++.+.+... .. -.+++++|+|+.|.+.... +.
T Consensus 71 ~~i~~~~~~--~~~g~~~illVi~~~~~t-----~~d~~~l~~l~~~fg-~~---~~~~~ivv~T~~d~l~~~~----~~ 135 (196)
T cd01852 71 KEIVRCLSL--SAPGPHAFLLVVPLGRFT-----EEEEQAVETLQELFG-EK---VLDHTIVLFTRGDDLEGGT----LE 135 (196)
T ss_pred HHHHHHHHh--cCCCCEEEEEEEECCCcC-----HHHHHHHHHHHHHhC-hH---hHhcEEEEEECccccCCCc----HH
Confidence 344444444 456789999999998732 234555666655321 01 1146899999999987653 33
Q ss_pred HH-------HHHHHHhCCCC--CcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 356 RW-------VRHRAKAGGAP--KLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 356 ~w-------l~~~~k~~g~~--~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.| ++.+.+..+.. .|.+... |+.++.++++|++.|.+.+++
T Consensus 136 ~~~~~~~~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 136 DYLENSCEALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHhccHHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHh
Confidence 33 22233333321 0222223 467788999999999987765
No 234
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.29 E-value=8.2e-06 Score=79.63 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=56.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH---------HHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++++|+|+.+.. ++ ..+...++..+... . ...|+|||.||+||.......+.+ ...
T Consensus 69 ~~~~a~~~ilv~d~~~~~-s~-~~~~~~w~~~i~~~------~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~ 139 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPS-SF-ENVKEKWVPEITHH------C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPET 139 (175)
T ss_pred hcccCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHH
Confidence 456799999999998743 11 11222223333321 1 346899999999986542110001 111
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+.+.+..+ ...++.+||++|.|++++++.+..
T Consensus 140 ~~~~a~~~~---~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 140 GEKLARDLK---AVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHHhC---CcEEEEecCCCCCCHHHHHHHHHH
Confidence 222233333 234899999999999999988865
No 235
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.29 E-value=1.1e-06 Score=86.08 Aligned_cols=60 Identities=28% Similarity=0.389 Sum_probs=45.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
..+|+++|.+|||||||+|+|++..... .++..+|+|+++..+. ++.++.|+||||+...
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~----~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLA----RTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcc----cccCCCCceeEEEEEe--cCCeEEEeCCCCCCCc
Confidence 3579999999999999999999754111 2357789998876543 3567899999997643
No 236
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.29 E-value=1.3e-06 Score=96.71 Aligned_cols=87 Identities=20% Similarity=0.100 Sum_probs=59.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE-------------------------eCCceE
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-------------------------LPAKAK 453 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~-------------------------l~~~~~ 453 (666)
.+|++||.||||||||+|+|++... .++++|+||++...-... ....+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~------~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~ 75 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV------EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVE 75 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc------cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEE
Confidence 3689999999999999999997542 336889999876542111 112467
Q ss_pred EEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCC
Q 005972 454 LYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKAR 494 (666)
Q Consensus 454 liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~ 494 (666)
++||||+........ .....++...+..+...++++..
T Consensus 76 i~D~aGl~~ga~~g~---glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 76 LIDVAGLVPGAHEGR---GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred EEEcCCcCCCccchh---hHHHHHHHHHHHCCEEEEEEeCC
Confidence 999999976432111 11345556677788888887764
No 237
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.29 E-value=1.4e-06 Score=81.26 Aligned_cols=91 Identities=29% Similarity=0.298 Sum_probs=57.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+.++|.+|+|||||+|+|++...... +..+++|+.......... ..+.++||||+..+...... ......
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~ 76 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIV-----SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGE--RMVKAA 76 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEec-----cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHH--HHHHHH
Confidence 4799999999999999999997653322 356677776544322112 35789999999865542110 001112
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
.......+...|.++....
T Consensus 77 ~~~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 77 WSALKDVDLVLFVVDASEP 95 (168)
T ss_pred HHHHHhCCEEEEEEECCCc
Confidence 2334556677777777654
No 238
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.29 E-value=8.9e-07 Score=93.10 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=81.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccce--eec----------ccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVK--VSK----------LTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~--~~~----------~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~ 466 (666)
+|+++|.+|+|||||+|+|+...+.. .+. .......|+|++.......+. .++.++||||.....
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 58999999999999999998543321 000 011235688887554443343 367899999975311
Q ss_pred cccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 467 SMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 467 ~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
.......+.++...+.+++...+..+....+..+.....+. +.+.||++....+.+++.+.++.+++.
T Consensus 79 --------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~---ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 79 --------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR---IAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred --------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE---EEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 12334567778889999987765444433444444434454 235788887654445555555655543
No 239
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.29 E-value=4.8e-06 Score=76.48 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=36.9
Q ss_pred CCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHH
Q 005972 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
..|+++|+||+|+..... ...........+ ...++.+||++|.|+.++.+.|.
T Consensus 108 ~~p~ivv~nK~D~~~~~~-----~~~~~~~~~~~~---~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKL-----KTHVAFLFAKLN---GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchh-----hHHHHHHHhhcc---CCceEEeecCCCCCHHHHHHHhh
Confidence 458999999999976442 111222222333 23499999999999999998875
No 240
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.28 E-value=8.1e-06 Score=91.90 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=60.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.+. +..++. .+.+ ..+... +.+++|+|+||+|+++.......+..+ +.+.+...
T Consensus 137 g~~~~D~alLVVda~~g-~~~~qT-~ehl-~i~~~l--------gi~~iIVvlNKiDlv~~~~~~~~~~ei-~~~l~~~~ 204 (460)
T PTZ00327 137 GAAVMDAALLLIAANES-CPQPQT-SEHL-AAVEIM--------KLKHIIILQNKIDLVKEAQAQDQYEEI-RNFVKGTI 204 (460)
T ss_pred HHhhCCEEEEEEECCCC-ccchhh-HHHH-HHHHHc--------CCCcEEEEEecccccCHHHHHHHHHHH-HHHHHhhc
Confidence 45679999999999873 112322 1222 222211 345789999999998643322222222 22222211
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
. ....++++||++|.|++.|+++|.+.++.
T Consensus 205 ~-~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 205 A-DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred c-CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 1 13459999999999999999999976654
No 241
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.28 E-value=6.4e-06 Score=97.88 Aligned_cols=154 Identities=17% Similarity=0.181 Sum_probs=83.2
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc---cccCchhHHH
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE---NLIPDFDFDR 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~---~~iP~~d~~~ 276 (666)
.....+++|.+|+|||+| +++.+.++...+. .+.+. -...+... ++ ... +..|++.-..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~----------~GIT~-~iga~~v~-~~-----~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA----------GGITQ-HIGAYQVE-TN-----GGKITFLDTPGHEAFT 351 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccc----------Cceee-eccEEEEE-EC-----CEEEEEEECCCCccch
Confidence 345557789999997755 8887655431110 11111 01111111 10 111 1237764222
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.|..+ ....+|++|+|+|+.+ |..+... + .+..+.. .+.|+|+|+||+|+...+ ...+..
T Consensus 352 ~m~~r-----ga~~aDiaILVVdAdd--Gv~~qT~-e-~i~~a~~---------~~vPiIVviNKiDl~~a~--~e~V~~ 411 (787)
T PRK05306 352 AMRAR-----GAQVTDIVVLVVAADD--GVMPQTI-E-AINHAKA---------AGVPIIVAINKIDKPGAN--PDRVKQ 411 (787)
T ss_pred hHHHh-----hhhhCCEEEEEEECCC--CCCHhHH-H-HHHHHHh---------cCCcEEEEEECccccccC--HHHHHH
Confidence 33322 4566899999999987 4444332 1 2222222 245899999999996432 222322
Q ss_pred HHHHH---HHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 357 WVRHR---AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 357 wl~~~---~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+... .+.+|- ...++++||++|.|+++|++.|..
T Consensus 412 eL~~~~~~~e~~g~--~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 412 ELSEYGLVPEEWGG--DTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHhcccHHHhCC--CceEEEEeCCCCCCchHHHHhhhh
Confidence 22211 112221 124899999999999999998863
No 242
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.28 E-value=5.2e-06 Score=81.89 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=56.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC-------------hHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-------------PTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-------------~~~ 353 (666)
....+|++++|.|+.+... + ..+...++..+... . ...|++||+||+||...... ...
T Consensus 68 ~~~~a~~~ilv~dv~~~~s-f-~~~~~~~~~~i~~~------~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDS-L-ENVESKWLGEIREH------C-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEE 138 (189)
T ss_pred cccCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHH
Confidence 4567899999999988531 1 11222223333321 1 34689999999999753211 111
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...| .+..+ .-.++.+||++|.|+++++..|...
T Consensus 139 ~~~~----~~~~~---~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 139 GLAV----AKRIN---ALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred HHHH----HHHcC---CCEEEEccCCcCCCHHHHHHHHHHH
Confidence 1122 22333 1237899999999999999988764
No 243
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.27 E-value=6.7e-06 Score=79.42 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-------------CChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
...++|++++|.|+.+... + ..+.+.++..+... . ...|+++|+||+||.+.. .....
T Consensus 68 ~~~~a~~~i~v~d~~~~~s-f-~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSS-F-QNISEKWIPEIRKH------N-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR 138 (173)
T ss_pred ccCCCcEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH
Confidence 4568999999999988431 1 11212233333321 1 246899999999997532 11112
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHH
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
...| .+..+ ...++.+||++|.|+++|++.+.
T Consensus 139 ~~~~----a~~~~---~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 139 AKAL----AEKIG---ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHH----HHHhC---CCeEEEEeCCCCCCHHHHHHHHH
Confidence 2222 33444 33589999999999999998764
No 244
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.27 E-value=6.9e-06 Score=79.28 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=52.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHH--HHHHHh
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWV--RHRAKA 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl--~~~~k~ 364 (666)
...++|++++|+|+.+.. ++ ..+. ..+..+.+. . ....+|+++|+||+|+..... ...+...+ ..+.+.
T Consensus 63 ~~~~a~~ii~V~D~s~~~-s~-~~~~-~~l~~l~~~---~--~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~l~~~~~~ 133 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDD-RV-QEVK-EILRELLQH---P--RVSGKPILVLANKQDKKNALL-GADVIEYLSLEKLVNE 133 (167)
T ss_pred HHcCCCEEEEEEECCchh-HH-HHHH-HHHHHHHcC---c--cccCCcEEEEEeCCCCcCCCC-HHHHHHhcCcccccCC
Confidence 456799999999998853 11 1111 122222211 0 002468999999999865432 11122211 011101
Q ss_pred CCCCCcceEEEEecccC------cChhhHHHHHH
Q 005972 365 GGAPKLNGVYLVSARKD------LGVRNLLAFIK 392 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg------~GveeLl~~I~ 392 (666)
.+. .-.++.+||++| .|+.+-++.|.
T Consensus 134 ~~~--~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 134 NKS--LCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCc--eEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 110 124777999998 78888888775
No 245
>PRK04213 GTP-binding protein; Provisional
Probab=98.27 E-value=1.2e-06 Score=86.85 Aligned_cols=55 Identities=29% Similarity=0.372 Sum_probs=43.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++.. . .++..||+|++...+. +. .+.++||||+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~-----~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-V-----RVGKRPGVTRKPNHYD--WG-DFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCceeeCceEEe--ec-ceEEEeCCccc
Confidence 3579999999999999999998754 2 2357899999876554 33 68999999973
No 246
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.27 E-value=1.4e-05 Score=76.99 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=53.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.++.. ...+ ..++..+.... .....|+++|+||+|+..... .......+ .+...
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~-----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (170)
T cd04115 73 YRNVHAVVFVYDVTNMAS--FHSL-PSWIEECEQHS-----LPNEVPRILVGNKCDLREQIQVPTDLAQRF----ADAHS 140 (170)
T ss_pred hcCCCEEEEEEECCCHHH--HHhH-HHHHHHHHHhc-----CCCCCCEEEEEECccchhhcCCCHHHHHHH----HHHcC
Confidence 457899999999987431 1111 22222232211 113468999999999974432 22222222 33333
Q ss_pred CCCcceEEEEeccc---CcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARK---DLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkk---g~GveeLl~~I~~ 393 (666)
. .++.+||++ +.++++++..+..
T Consensus 141 ~----~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 141 M----PLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred C----cEEEEeccCCcCCCCHHHHHHHHHH
Confidence 3 288899999 7778887777654
No 247
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.26 E-value=1.6e-05 Score=88.75 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=52.2
Q ss_pred cccccCEEEEEEecCCCCCC-CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHh
Q 005972 287 GNANAGVVVMVVDCVDFDGM-FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKA 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs-~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~ 364 (666)
....+|++++|+|+.+.... .+.. ... +..++.. +.+++|+|+||+|+..... ....+..-++.+.+.
T Consensus 105 ~~~~aD~~ilVvDa~~~~~~~~~~t-~~~-~~~~~~~--------~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~ 174 (426)
T TIGR00483 105 GASQADAAVLVVAVGDGEFEVQPQT-REH-AFLARTL--------GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKK 174 (426)
T ss_pred hhhhCCEEEEEEECCCCCcccCCch-HHH-HHHHHHc--------CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHH
Confidence 45679999999999985211 1111 111 1111111 2357899999999975322 111122223334445
Q ss_pred CCCCC-cceEEEEecccCcChhhH
Q 005972 365 GGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 365 ~g~~~-~~~V~~VSAkkg~GveeL 387 (666)
.+... ...++++||++|.|+.++
T Consensus 175 ~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 175 VGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred cCCCcccceEEEeecccccccccc
Confidence 55321 235899999999999874
No 248
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.24 E-value=3e-06 Score=97.25 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=47.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.||||||||+|+|++.+ . .++++||+|.+...-..... ..+.++|.||+..-.-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q-----~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-Q-----KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-c-----eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 469999999999999999999864 2 34699999998765443333 3589999999986544
No 249
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.24 E-value=1.9e-05 Score=78.68 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=59.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+|+|+|+.+... + ..+ +.+++.+... . ...|+|||.||+||... ....+..+.|. +..
T Consensus 75 ~~~~ad~illVfD~t~~~S-f-~~~-~~w~~~i~~~------~-~~~piilVGNK~DL~~~~~v~~~~~~~~a----~~~ 140 (189)
T cd04121 75 YSRGAQGIILVYDITNRWS-F-DGI-DRWIKEIDEH------A-PGVPKILVGNRLHLAFKRQVATEQAQAYA----ERN 140 (189)
T ss_pred HhcCCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------C-CCCCEEEEEECccchhccCCCHHHHHHHH----HHc
Confidence 3457999999999988532 1 122 2223333321 1 34689999999999643 33334445554 344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. ..+.+||++|.|++++++.|.+.
T Consensus 141 ~~----~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 141 GM----TFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred CC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 53 38899999999999999888653
No 250
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.24 E-value=9e-06 Score=81.09 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=58.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC--------hHH-HHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS--------PTR-LDRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~--------~~~-L~~w 357 (666)
...++|++++|.|. ++ ...+..+++.+... .+|+++|+||+|+...... .+. +...
T Consensus 77 ~~~~~d~~l~v~~~-~~-----~~~d~~~~~~l~~~---------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i 141 (197)
T cd04104 77 KFSEYDFFIIISST-RF-----SSNDVKLAKAIQCM---------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEI 141 (197)
T ss_pred CccCcCEEEEEeCC-CC-----CHHHHHHHHHHHHh---------CCCEEEEEecccchhhhhhccccccccHHHHHHHH
Confidence 34678988887543 22 23344555656542 3589999999999742210 112 2222
Q ss_pred HHH---HHHhCCCCCcceEEEEecc--cCcChhhHHHHHHhhcCC
Q 005972 358 VRH---RAKAGGAPKLNGVYLVSAR--KDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 358 l~~---~~k~~g~~~~~~V~~VSAk--kg~GveeLl~~I~~~l~~ 397 (666)
.+. .....|.. ...||++|+. .++++..|.+.|...+|.
T Consensus 142 ~~~~~~~~~~~~~~-~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 142 RDNCLENLQEAGVS-EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHHHcCCC-CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 222 22232332 4469999998 689999999999877764
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.23 E-value=1.6e-06 Score=91.69 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=38.2
Q ss_pred CcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+|.++|+||+|++..+. +... .+. .+.+++||++++|+++|++.|...+.
T Consensus 240 ~p~l~v~NKiD~~~~e~----~~~l----~~~------~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 240 KPALYVVNKIDLPGLEE----LERL----ARK------PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeEEEEecccccCHHH----HHHH----Hhc------cceEEEecccCCCHHHHHHHHHHhhC
Confidence 58899999999987433 3322 111 14899999999999999999998653
No 252
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.23 E-value=8.3e-06 Score=94.79 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=88.4
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHH--HHH---HHHhhhcCCceeecccccceecceeccccccc---ccCch-h
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERK--KKA---REAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDF-D 273 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk--~~a---~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP~~-d 273 (666)
-.++||-.++|||+| +++....-.+..+. .+. -..+++.+.+..++.++ + .|.........+ ..|++ +
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~-~-~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVR-L-NYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEE-E-EEEccCCCcEEEEEEECCCcHH
Confidence 346799999998877 88876432211110 000 00111233333333222 1 111000011111 23665 4
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
|...+.+ ++..+|.+++|+|+.+.. ..... ..+ ..+.. .+.|+|+|+||+|+.....
T Consensus 87 F~~~v~~------sl~~aD~aILVVDas~gv--~~qt~-~~~-~~~~~---------~~lpiIvViNKiDl~~a~~---- 143 (600)
T PRK05433 87 FSYEVSR------SLAACEGALLVVDASQGV--EAQTL-ANV-YLALE---------NDLEIIPVLNKIDLPAADP---- 143 (600)
T ss_pred HHHHHHH------HHHHCCEEEEEEECCCCC--CHHHH-HHH-HHHHH---------CCCCEEEEEECCCCCcccH----
Confidence 4444333 455789999999998732 22221 111 11111 2357999999999864321
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
....+.+...++.. ...++++||++|.|+++|++.|.+.+|.
T Consensus 144 -~~v~~ei~~~lg~~-~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 144 -ERVKQEIEDVIGID-ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -HHHHHHHHHHhCCC-cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 11112222334432 3458999999999999999999887763
No 253
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.22 E-value=6.7e-06 Score=86.50 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=48.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.+ |..+. .+.++..+.. .+.|+++++||+|+..... ...+..+...++
T Consensus 84 ~l~~aD~ailVVDa~~--g~~~~--t~~~~~~~~~---------~~~p~ivviNK~D~~~a~~-----~~~~~~l~~~l~ 145 (270)
T cd01886 84 SLRVLDGAVAVFDAVA--GVEPQ--TETVWRQADR---------YNVPRIAFVNKMDRTGADF-----FRVVEQIREKLG 145 (270)
T ss_pred HHHHcCEEEEEEECCC--CCCHH--HHHHHHHHHH---------cCCCEEEEEECCCCCCCCH-----HHHHHHHHHHhC
Confidence 5667899999999987 33322 2344554443 3468999999999875331 222333333444
Q ss_pred CCCcceEEEEecccC
Q 005972 367 APKLNGVYLVSARKD 381 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg 381 (666)
...+..++++|+..+
T Consensus 146 ~~~~~~~~Pisa~~~ 160 (270)
T cd01886 146 ANPVPLQLPIGEEDD 160 (270)
T ss_pred CCceEEEeccccCCC
Confidence 333667889998754
No 254
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.22 E-value=1.1e-06 Score=83.39 Aligned_cols=110 Identities=20% Similarity=0.119 Sum_probs=61.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe----CCceEEEECCCCCCCCcccccCChhhH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL----PAKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l----~~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.++++|.+|||||||+|+|+...... ...+++|.+........ +..+.++||||.......
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~--------- 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM--------- 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc------ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH---------
Confidence 58899999999999999998654221 24567777653222222 236899999996421110
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
........+...+.++............+..++....++ +++.|++++.
T Consensus 67 -~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~---ivv~NK~Dl~ 115 (168)
T cd01887 67 -RARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPF---IVALNKIDKP 115 (168)
T ss_pred -HHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE---EEEEEceecc
Confidence 011234456667777765432221111222233333443 3456777765
No 255
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.22 E-value=2.2e-05 Score=78.90 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=56.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++|+|+|+.+... ...+ ..++..+.+. . ...|++||+||+||......... ..| .+..+
T Consensus 64 ~~~~ad~~ilV~D~t~~~S--~~~i-~~w~~~i~~~------~-~~~piilvgNK~Dl~~~~v~~~~-~~~----~~~~~ 128 (200)
T smart00176 64 YYIQGQCAIIMFDVTARVT--YKNV-PNWHRDLVRV------C-ENIPIVLCGNKVDVKDRKVKAKS-ITF----HRKKN 128 (200)
T ss_pred HhcCCCEEEEEEECCChHH--HHHH-HHHHHHHHHh------C-CCCCEEEEEECcccccccCCHHH-HHH----HHHcC
Confidence 3457899999999988421 1112 2223333332 1 34689999999999654433222 223 23334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ..+.+||++|.|+++++..|...
T Consensus 129 ~----~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 129 L----QYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999998764
No 256
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.21 E-value=1.2e-05 Score=89.30 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|||+.+... .++ ..+.+ ..+... +.+++++|+||+|+++.......+.. +..+.+...
T Consensus 100 g~~~aD~aIlVVDa~~g~~-~~q-t~e~l-~~l~~~--------gi~~iIVvvNK~Dl~~~~~~~~~~~~-i~~~l~~~~ 167 (406)
T TIGR03680 100 GAALMDGALLVIAANEPCP-QPQ-TKEHL-MALEII--------GIKNIVIVQNKIDLVSKEKALENYEE-IKEFVKGTV 167 (406)
T ss_pred HHHHCCEEEEEEECCCCcc-ccc-hHHHH-HHHHHc--------CCCeEEEEEEccccCCHHHHHHHHHH-HHhhhhhcc
Confidence 4456899999999997420 121 11222 222221 33578999999999864321111111 111111111
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.. -..++++||++|.|+++|++.|...++
T Consensus 168 ~~-~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 168 AE-NAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cC-CCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 00 124899999999999999999988654
No 257
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.21 E-value=1.5e-05 Score=82.33 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=32.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
+...+|.+++|+|+.+. ... ..+.++..+.+ ...|+++++||+|+...
T Consensus 84 ~l~~aD~~IlVvd~~~g--~~~--~~~~~~~~~~~---------~~~P~iivvNK~D~~~a 131 (237)
T cd04168 84 SLSVLDGAILVISAVEG--VQA--QTRILWRLLRK---------LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHhCeEEEEEeCCCC--CCH--HHHHHHHHHHH---------cCCCEEEEEECccccCC
Confidence 45568999999999873 222 23344454443 24589999999999753
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.20 E-value=1.3e-06 Score=90.80 Aligned_cols=89 Identities=30% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC----ceeEEEEEeeEeCCceEEEECCCCCCCCcccccCC
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG----TTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLN 471 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG----TT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~ 471 (666)
.++.++.++|++|+|||||||+|+......++ ..+- +|+....+. .....|.||||+.....-+..
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-----~vg~~t~~~~~~~~~~~---~~~l~lwDtPG~gdg~~~D~~-- 106 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVS-----KVGVGTDITTRLRLSYD---GENLVLWDTPGLGDGKDKDAE-- 106 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceee-----ecccCCCchhhHHhhcc---ccceEEecCCCcccchhhhHH--
Confidence 35678899999999999999999966555443 3332 333333332 257899999999876543311
Q ss_pred hhhHHHHHhhhhcCceeEEecCCC
Q 005972 472 RDEQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 472 ~~~~~~~~~~kel~~~~f~l~~~~ 495 (666)
....+.....+++.....++.+.
T Consensus 107 -~r~~~~d~l~~~DLvL~l~~~~d 129 (296)
T COG3596 107 -HRQLYRDYLPKLDLVLWLIKADD 129 (296)
T ss_pred -HHHHHHHHhhhccEEEEeccCCC
Confidence 13456667777776666666543
No 259
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.20 E-value=2.1e-06 Score=81.89 Aligned_cols=57 Identities=32% Similarity=0.394 Sum_probs=42.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
+|.++|.+|||||||+|+|++... .++..|++|++........ ..++.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP------EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999997542 2346788887764322112 23689999999853
No 260
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.18 E-value=1.3e-06 Score=81.98 Aligned_cols=83 Identities=23% Similarity=0.246 Sum_probs=52.0
Q ss_pred EEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHHHHhh
Q 005972 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIR 481 (666)
Q Consensus 403 vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~ 481 (666)
++|.+|||||||+|+|++.. . .++..||+|++.......++ ..+.++||||+....... .+........
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~-----~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~ 70 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-Q-----KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS----EDEKVARDFL 70 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-c-----cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC----hhHHHHHHHh
Confidence 57999999999999998753 2 23577999988644332233 367899999997544321 1111111112
Q ss_pred --hhcCceeEEecCCC
Q 005972 482 --KELQPRTYRVKARQ 495 (666)
Q Consensus 482 --kel~~~~f~l~~~~ 495 (666)
+..+...+.++...
T Consensus 71 ~~~~~d~vi~v~d~~~ 86 (158)
T cd01879 71 LGEKPDLIVNVVDATN 86 (158)
T ss_pred cCCCCcEEEEEeeCCc
Confidence 45666677776543
No 261
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.18 E-value=5.2e-06 Score=85.35 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=54.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+++++|.+|||||||+|+|++... .++.+|+||.+.......+ +..+.++||||+........ .....++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~------~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~---~~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS------EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK---GRGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------cccCCCCccccceEEEEEECCeEEEEEECCCcccccccch---hHHHHHH
Confidence 688999999999999999997542 2357899998765432222 34678999999865432110 0012233
Q ss_pred HhhhhcCceeEEecC
Q 005972 479 EIRKELQPRTYRVKA 493 (666)
Q Consensus 479 ~~~kel~~~~f~l~~ 493 (666)
...+..+...+.++.
T Consensus 73 ~~~~~ad~il~V~D~ 87 (233)
T cd01896 73 AVARTADLILMVLDA 87 (233)
T ss_pred HhhccCCEEEEEecC
Confidence 445556666666654
No 262
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.17 E-value=4e-06 Score=90.20 Aligned_cols=85 Identities=24% Similarity=0.203 Sum_probs=57.7
Q ss_pred EEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe---------------------C----CceEEE
Q 005972 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL---------------------P----AKAKLY 455 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l---------------------~----~~~~li 455 (666)
+++||.||||||||+|+|++... .++++|+||++...-...+ + ..+.++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~------~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~ 74 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV------EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELI 74 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC------cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEE
Confidence 47899999999999999997542 3468999998854321111 1 247899
Q ss_pred ECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCC
Q 005972 456 DTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKAR 494 (666)
Q Consensus 456 DTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~ 494 (666)
||||+....... ......++...+..+...++++..
T Consensus 75 D~aGlv~ga~~~---~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 75 DVAGLVPGAHEG---KGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ECCCCCCCccch---hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 999997543211 111235556678888888888764
No 263
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.15 E-value=3e-05 Score=86.25 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.. .+.. .+ .+..+... +.+++++|+||+|+++.......... ++.+.+...
T Consensus 105 ~~~~~D~~llVVDa~~~~~-~~~t-~~-~l~~l~~~--------~i~~iiVVlNK~Dl~~~~~~~~~~~~-i~~~l~~~~ 172 (411)
T PRK04000 105 GAALMDGAILVIAANEPCP-QPQT-KE-HLMALDII--------GIKNIVIVQNKIDLVSKERALENYEQ-IKEFVKGTV 172 (411)
T ss_pred HHhhCCEEEEEEECCCCCC-ChhH-HH-HHHHHHHc--------CCCcEEEEEEeeccccchhHHHHHHH-HHHHhcccc
Confidence 4567899999999997421 1211 11 22333321 23578999999999865432111121 112221111
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
. ....++++||++|.|+++|++.|...++.
T Consensus 173 ~-~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 173 A-ENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred C-CCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 0 12348999999999999999999886553
No 264
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.15 E-value=3.9e-05 Score=80.20 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=32.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
++..+|.+++|+|+.+.. .. ....++..+.. .+.|+++|+||+|+...
T Consensus 84 ~l~~aD~~i~Vvd~~~g~--~~--~~~~~~~~~~~---------~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 84 ALRAADAALVVVSAQSGV--EV--GTEKLWEFADE---------AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHCCEEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCCEEEEEECCccCCC
Confidence 456789999999998742 22 12334444443 34588999999998754
No 265
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.15 E-value=3.9e-06 Score=83.36 Aligned_cols=89 Identities=26% Similarity=0.169 Sum_probs=53.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-C-ceEEEECCCCCCCCcccccCChhhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-A-KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~-~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
.+|+++|.+|||||||+|+|++.... +...+++|.+.......++ . .+.++||||+....... +...-..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~ 113 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY------AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ--LVEAFRS 113 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc------cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH--HHHHHHH
Confidence 58999999999999999999975421 2355666766543322232 2 68899999986432111 0000111
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
........+...+.++...
T Consensus 114 ~~~~~~~~d~ii~v~D~~~ 132 (204)
T cd01878 114 TLEEVAEADLLLHVVDASD 132 (204)
T ss_pred HHHHHhcCCeEEEEEECCC
Confidence 2223445666777776654
No 266
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.14 E-value=1.4e-05 Score=74.09 Aligned_cols=138 Identities=21% Similarity=0.300 Sum_probs=89.7
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHH-HHHHHhc
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDR-VIATRLM 283 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~-~L~~~l~ 283 (666)
+.||+-+.|+++| +.|.|.-. -.+|-|| ..|+. ...+..|+.-|.+ ...+.+.
T Consensus 5 ~~vG~~gcGKTtL~q~L~G~~~--lykKTQA-------------------ve~~d----~~~IDTPGEy~~~~~~Y~aL~ 59 (148)
T COG4917 5 AFVGQVGCGKTTLFQSLYGNDT--LYKKTQA-------------------VEFND----KGDIDTPGEYFEHPRWYHALI 59 (148)
T ss_pred EEecccccCchhHHHHhhcchh--hhcccce-------------------eeccC----ccccCCchhhhhhhHHHHHHH
Confidence 4689999999988 65555431 1222222 22211 1122345544443 3344444
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHH
Q 005972 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 284 ~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k 363 (666)
. .+.++|+|++|..+.|+...+|+. +... ..+|+|-|+||+||.. .....+.+.|+ .
T Consensus 60 t--t~~dadvi~~v~~and~~s~f~p~--------f~~~--------~~k~vIgvVTK~DLae-d~dI~~~~~~L----~ 116 (148)
T COG4917 60 T--TLQDADVIIYVHAANDPESRFPPG--------FLDI--------GVKKVIGVVTKADLAE-DADISLVKRWL----R 116 (148)
T ss_pred H--HhhccceeeeeecccCccccCCcc--------cccc--------cccceEEEEecccccc-hHhHHHHHHHH----H
Confidence 4 678999999999999988777753 1111 2346999999999984 22345567776 4
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.| ..+||.+|+....|+++|+++|...
T Consensus 117 eaG---a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 117 EAG---AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HcC---CcceEEEeccCcccHHHHHHHHHhh
Confidence 566 4569999999999999999998754
No 267
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.14 E-value=4e-06 Score=79.03 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=53.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.|.++|.+|||||||+|+|++..... ......+|+|.+.......+ ...+.++||||.... ...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~----------~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDR---LPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF----------IKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccccc---chhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH----------HHHH
Confidence 58899999999999999998643111 11123567887754333223 236789999996321 1122
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
.......+...|.++...
T Consensus 69 ~~~~~~ad~ii~V~d~~~ 86 (164)
T cd04171 69 LAGAGGIDLVLLVVAADE 86 (164)
T ss_pred HhhhhcCCEEEEEEECCC
Confidence 334556777888888654
No 268
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.12 E-value=4.8e-05 Score=75.32 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH---------HHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++|+|.|+.+... + ..+...+...+... . ...|++||.||.||.........+ ...
T Consensus 71 ~~~~a~~~ilvydit~~~S-f-~~~~~~w~~~i~~~------~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 141 (191)
T cd01875 71 SYPQTNVFIICFSIASPSS-Y-ENVRHKWHPEVCHH------C-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQ 141 (191)
T ss_pred hccCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHH
Confidence 4567999999999988532 1 11211222222221 1 346899999999995432100000 011
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+.+++..+ ....+.+||++|.|+++++..|.+.
T Consensus 142 ~~~~a~~~~---~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 142 GGALAKQIH---AVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HHHHHHHcC---CcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 122333444 2247889999999999999988754
No 269
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.12 E-value=1.1e-05 Score=78.94 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=57.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...+++.||||||+.+.. .-.+....+...+.. ... ...|+++++||.|+..... ...+...+. ...+.
T Consensus 78 y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~----~~~--~~~piLIl~NK~D~~~~~~-~~~i~~~l~--l~~l~ 146 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPE--RLQEAKEELKELLND----PEL--KDIPILILANKQDLPDAMS-EEEIKEYLG--LEKLK 146 (175)
T ss_dssp GHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTS----GGG--TTSEEEEEEESTTSTTSST-HHHHHHHTT--GGGTT
T ss_pred eccccceeEEEEecccce--eecccccchhhhcch----hhc--ccceEEEEeccccccCcch-hhHHHhhhh--hhhcc
Confidence 456789999999999843 112222223222221 111 3469999999999865432 233333221 01221
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
..+.-.|+.+||.+|.|+.+.++.|.+
T Consensus 147 ~~~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp SSSCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred cCCceEEEeeeccCCcCHHHHHHHHHh
Confidence 112345889999999999999998865
No 270
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.11 E-value=3.9e-05 Score=78.46 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=46.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH-HHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH-RAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~-~~k~~ 365 (666)
.+..+|+|++|+|+.... .. .+..++..+... +.+.+++|+||+|++........+..-++. +..++
T Consensus 100 ~ak~aDvVllviDa~~~~--~~--~~~~i~~~l~~~--------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~ 167 (225)
T cd01882 100 IAKVADLVLLLIDASFGF--EM--ETFEFLNILQVH--------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV 167 (225)
T ss_pred HHHhcCEEEEEEecCcCC--CH--HHHHHHHHHHHc--------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh
Confidence 346689999999998632 21 233455555432 223356699999998543321222222222 22222
Q ss_pred CCCCcceEEEEecccCc
Q 005972 366 GAPKLNGVYLVSARKDL 382 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~ 382 (666)
. ....|+++||++..
T Consensus 168 ~--~~~ki~~iSa~~~~ 182 (225)
T cd01882 168 Y--QGAKLFYLSGIVHG 182 (225)
T ss_pred C--CCCcEEEEeeccCC
Confidence 1 25679999999873
No 271
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.6e-06 Score=89.52 Aligned_cols=86 Identities=26% Similarity=0.255 Sum_probs=61.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee-------------------EeCCceEEEECCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG-------------------ILPAKAKLYDTPG 459 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~-------------------~l~~~~~liDTPG 459 (666)
..++|||.||||||||+|+|+... .. ..++|-||.++..-.. +.+..+.++|.+|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~-----~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAG 76 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AE-----IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAG 76 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-cc-----ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecc
Confidence 478999999999999999999765 33 2589999988533211 1223578999999
Q ss_pred CCCCCcccccCChhhHHHHHhhhhcCceeEEecC
Q 005972 460 LLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKA 493 (666)
Q Consensus 460 i~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~ 493 (666)
++....--.=| ..+++.-.++.+....+++.
T Consensus 77 LV~GAs~GeGL---GNkFL~~IRevdaI~hVVr~ 107 (372)
T COG0012 77 LVKGASKGEGL---GNKFLDNIREVDAIIHVVRC 107 (372)
T ss_pred cCCCcccCCCc---chHHHHhhhhcCeEEEEEEe
Confidence 99776543222 46677777888887776654
No 272
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.10 E-value=4.9e-06 Score=77.97 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=42.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.|+++|.+|+|||||+|+|++..... ..+..+|+|.....+. .+....++||||+...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~----~~~~~~~~t~~~~~~~--~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLA----RTSKTPGKTQLINFFN--VNDKFRLVDLPGYGYA 58 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcee----eecCCCCcceeEEEEE--ccCeEEEecCCCcccc
Confidence 47899999999999999999533222 1256778887765443 4558899999998654
No 273
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.10 E-value=2.6e-05 Score=76.63 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=55.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-----------ChHHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-----------SPTRLDR 356 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-----------~~~~L~~ 356 (666)
...++.++++.|+.+.. ++ ..+...++..+... . ...|+++|+||+|+.+... ......
T Consensus 70 ~~~a~~~llv~~i~~~~-s~-~~~~~~~~~~i~~~------~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~- 139 (187)
T cd04129 70 YSKAHVILIGFAVDTPD-SL-ENVRTKWIEEVRRY------C-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGK- 139 (187)
T ss_pred cCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHH-
Confidence 45789999999987643 11 11212222333221 1 3468999999999864211 111222
Q ss_pred HHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 357 WVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 357 wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+.+.++ ...++.+||++|.|++++++.+.+.
T Consensus 140 ---~~~~~~~---~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 140 ---RVAKEIG---AKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred ---HHHHHhC---CcEEEEccCCCCCCHHHHHHHHHHH
Confidence 2334455 2348899999999999999988753
No 274
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.09 E-value=1.5e-05 Score=72.22 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=59.1
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchhH----HH-
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDF----DR- 276 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d~----~~- 276 (666)
+++|+||+|||+| |.|.+.+... ......|++...|+.+......+. .|++.. ..
T Consensus 3 ~iiG~~~~GKSTlin~l~~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~ 66 (116)
T PF01926_consen 3 AIIGRPNVGKSTLINALTGKKLAK----------------VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDND 66 (116)
T ss_dssp EEEESTTSSHHHHHHHHHTSTSSE----------------ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHH
T ss_pred EEECCCCCCHHHHHHHHhcccccc----------------ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHH
Confidence 4689999996655 9999865322 222244555555544332222222 265421 11
Q ss_pred -HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEEC
Q 005972 277 -VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTK 341 (666)
Q Consensus 277 -~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNK 341 (666)
.+...+.+ .+..+|++++|+|+.+. ....+..++.+|+ ..+|+++|+||
T Consensus 67 ~~~~~~~~~--~~~~~d~ii~vv~~~~~----~~~~~~~~~~~l~----------~~~~~i~v~NK 116 (116)
T PF01926_consen 67 GKEIRKFLE--QISKSDLIIYVVDASNP----ITEDDKNILRELK----------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHH--HHCTESEEEEEEETTSH----SHHHHHHHHHHHH----------TTSEEEEEEES
T ss_pred HHHHHHHHH--HHHHCCEEEEEEECCCC----CCHHHHHHHHHHh----------cCCCEEEEEcC
Confidence 12222333 34779999999997661 2233455656663 24689999999
No 275
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.08 E-value=3.8e-05 Score=89.18 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=89.1
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHH------HHHhhhcCCceeecccccceecceecccccccccCch-hHHH
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKA------REAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDR 276 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a------~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~-d~~~ 276 (666)
.+++|..++|||+| ++|....-.+..+...+ -..+++.+.+..+..++- .|+..... -+..|++ +|..
T Consensus 4 IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v--~~~~~kin--lIDTPGh~DF~~ 79 (594)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI--RYNGTKIN--IVDTPGHADFGG 79 (594)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE--EECCEEEE--EEECCCHHHHHH
Confidence 36799999998877 88876432211110000 001122344444433221 12111100 0123766 4444
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+.. ++..+|.+++|||+.+ |..+. .+.++..+.. .+.|+|+|+||+|+..... ...+..
T Consensus 80 ev~~------~l~~aD~alLVVDa~~--G~~~q--T~~~l~~a~~---------~~ip~IVviNKiD~~~a~~-~~v~~e 139 (594)
T TIGR01394 80 EVER------VLGMVDGVLLLVDASE--GPMPQ--TRFVLKKALE---------LGLKPIVVINKIDRPSARP-DEVVDE 139 (594)
T ss_pred HHHH------HHHhCCEEEEEEeCCC--CCcHH--HHHHHHHHHH---------CCCCEEEEEECCCCCCcCH-HHHHHH
Confidence 3332 4567999999999987 43433 2333343333 2357899999999864321 111222
Q ss_pred HHHHHHHhCCCCC---cceEEEEecccCc----------ChhhHHHHHHhhcCC
Q 005972 357 WVRHRAKAGGAPK---LNGVYLVSARKDL----------GVRNLLAFIKELAGP 397 (666)
Q Consensus 357 wl~~~~k~~g~~~---~~~V~~VSAkkg~----------GveeLl~~I~~~l~~ 397 (666)
+..++..++... .-.++++||++|+ |+..|++.|.+++|.
T Consensus 140 -i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 140 -VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred -HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 222222222110 0138899999997 799999999888764
No 276
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.07 E-value=7.5e-06 Score=75.16 Aligned_cols=91 Identities=25% Similarity=0.277 Sum_probs=59.6
Q ss_pred EEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCCcccccCChhhHHHHHh
Q 005972 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEI 480 (666)
Q Consensus 403 vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~ 480 (666)
++|.+|+|||||+|+|++..... .+..+++|.......... ...+.++||||+.......... .......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~---~~~~~~~ 72 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-----VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER---EELARRV 72 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-----cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH---HHHHHHH
Confidence 58999999999999999764332 246778887766554333 3478999999998665432110 1122334
Q ss_pred hhhcCceeEEecCCCcccccc
Q 005972 481 RKELQPRTYRVKARQAVHVGG 501 (666)
Q Consensus 481 ~kel~~~~f~l~~~~~l~lgg 501 (666)
....+...|.++.........
T Consensus 73 ~~~~d~il~v~~~~~~~~~~~ 93 (163)
T cd00880 73 LERADLILFVVDADLRADEEE 93 (163)
T ss_pred HHhCCEEEEEEeCCCCCCHHH
Confidence 566777788887765444433
No 277
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.05 E-value=8.6e-05 Score=76.51 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|.|+.+... +. .+...++..+.+. . ...|+|||.||+||-.. ......
T Consensus 81 ~~~~ad~vIlVyDit~~~S-f~-~~~~~w~~~i~~~------~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 81 CYSDSDAVLLCFDISRPET-VD-SALKKWKAEIMDY------C-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQ 151 (232)
T ss_pred HcCCCcEEEEEEECCChHH-HH-HHHHHHHHHHHHh------C-CCCCEEEEEECcccccccchhhhhccccCCcCCHHH
Confidence 4568999999999988531 11 1112222333321 1 24589999999998531 222233
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCc-ChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDL-GVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~-GveeLl~~I~~~ 394 (666)
.+.| +++.+. ...+.+||++|. |++++...+...
T Consensus 152 ~~~~----a~~~~~---~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 152 GCAL----AKQLGA---EVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred HHHH----HHHcCC---CEEEEccCCcCCcCHHHHHHHHHHH
Confidence 3333 455663 236789999997 899999887643
No 278
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.04 E-value=5.6e-06 Score=82.59 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=40.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~ 464 (666)
.+++++|.+|||||||+|+|++........+++. ...||+....+.......+.++||||+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCceeeecCCCCCceEEeCCCCCccc
Confidence 4689999999999999999997432211111111 1224554433321112368999999998544
No 279
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.03 E-value=2.9e-05 Score=79.50 Aligned_cols=91 Identities=21% Similarity=0.200 Sum_probs=58.4
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC--
Q 005972 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA-- 367 (666)
Q Consensus 290 ~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~-- 367 (666)
.+|++++|+|+.+.. . ..+..++.++.. ...|+++|+||+|++++......+..+. ...+..|.
T Consensus 109 ~~D~~llVvda~~g~--~--~~d~~~l~~l~~---------~~ip~ivvvNK~D~~~~~~~~~~~~~l~-~~L~~~g~~~ 174 (224)
T cd04165 109 APDYAMLVVAANAGI--I--GMTKEHLGLALA---------LNIPVFVVVTKIDLAPANILQETLKDLK-RILKVPGVRK 174 (224)
T ss_pred CCCEEEEEEECCCCC--c--HHHHHHHHHHHH---------cCCCEEEEEECccccCHHHHHHHHHHHH-HHhcCCCccc
Confidence 589999999998732 2 334555566554 2357999999999986543222222221 11121111
Q ss_pred --------------------CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 --------------------PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 --------------------~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.....||++||.+|.|++.|+++|..+
T Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 175 LPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred cceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 012358999999999999999998754
No 280
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.03 E-value=8.4e-05 Score=72.99 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=56.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|.|+.+... + ..+...+...+++. . ...|++||.||+||.+. ......
T Consensus 69 ~~~~a~~~ilvfdit~~~S-f-~~~~~~w~~~i~~~------~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e 139 (178)
T cd04131 69 CYPDSDAVLICFDISRPET-L-DSVLKKWRGEIQEF------C-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQ 139 (178)
T ss_pred hcCCCCEEEEEEECCChhh-H-HHHHHHHHHHHHHH------C-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHH
Confidence 4568999999999987532 2 11112223333332 1 34689999999999541 122222
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcC-hhhHHHHHHh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLG-VRNLLAFIKE 393 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~G-veeLl~~I~~ 393 (666)
.. .++++.+. ...+.+||++|.+ ++++...+..
T Consensus 140 ~~----~~a~~~~~---~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 140 GC----AIAKQLGA---EIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HH----HHHHHhCC---CEEEECccCcCCcCHHHHHHHHHH
Confidence 23 33455552 2368899999995 9999887764
No 281
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.02 E-value=4.5e-06 Score=88.47 Aligned_cols=59 Identities=31% Similarity=0.357 Sum_probs=45.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
.+|++||.||||||||+|+|++... .+..+|-||+..+.-...+ +.+++|+|+||+...
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s------eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS------EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc------cccccCceecccccceEeecCceEEEEcCcccccC
Confidence 4899999999999999999997542 2347899998865432222 358899999999743
No 282
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.01 E-value=5.3e-05 Score=74.55 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=58.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-----------CChHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-----------VSPTRLD 355 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-----------~~~~~L~ 355 (666)
...+++.+|+|.|+.+... + ..+.+.++..+++. . ...|++||.||+||.+.. .......
T Consensus 69 ~~~~a~~~ilvyd~~~~~S-f-~~~~~~w~~~i~~~------~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~ 139 (176)
T cd04133 69 SYRGADVFVLAFSLISRAS-Y-ENVLKKWVPELRHY------A-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGE 139 (176)
T ss_pred hcCCCcEEEEEEEcCCHHH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHH
Confidence 4567999999999988542 1 11212222333321 1 346899999999996532 2223334
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.| ++..+. ...+-+||++|.|++++++.+.+.
T Consensus 140 ~~----a~~~~~---~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 140 EL----RKQIGA---AAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred HH----HHHcCC---CEEEECCCCcccCHHHHHHHHHHH
Confidence 44 344442 237789999999999999988764
No 283
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.01 E-value=6.4e-06 Score=79.48 Aligned_cols=115 Identities=19% Similarity=0.118 Sum_probs=63.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeec----------ccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSK----------LTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSM 468 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~----------~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~ 468 (666)
+|+++|.+|+|||||+|+|++........ ......+|+|.+........ ...+.++||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 47899999999999999998765432110 00122355665543222112 2367899999975311
Q ss_pred cCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 469 RLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 469 ~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
.......+..+...+.++............+..+.....+++ ++.|+++.
T Consensus 77 ------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~---iv~nK~D~ 126 (189)
T cd00881 77 ------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII---VAINKIDR 126 (189)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE---EEEECCCC
Confidence 112233456778888888765433222222233332234443 34556554
No 284
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.00 E-value=8.5e-06 Score=96.28 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=81.6
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--ecc----cc------cCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SKL----TE------APIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~~----t~------S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+|+|.+|+|||||+|+|+...+... +.. ++ ...+|+|++.......++ .++.++||||......
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 4899999999999999999986443321 000 01 124788888655444343 3789999999965221
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcC
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVG 544 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g 544 (666)
........++...+.++............+..++....+++ .+.||++......++..+.++.+++
T Consensus 91 ----------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i---vviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 91 ----------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI---AFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred ----------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE---EEEECCCCCCCCHHHHHHHHHHHhC
Confidence 12344566788899998876655554444444444344542 3578888654444444445555444
No 285
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.00 E-value=0.00011 Score=72.59 Aligned_cols=91 Identities=23% Similarity=0.222 Sum_probs=56.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|.|+.+.. ++ ..+...+++.+++. . ...|+|||.||+||... ......
T Consensus 73 ~~~~ad~~ilvyDit~~~-Sf-~~~~~~w~~~i~~~------~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 73 SYPDSDAVLICFDISRPE-TL-DSVLKKWKGEIQEF------C-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHH------C-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 456899999999998753 11 11112223333331 1 34689999999998531 122233
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcC-hhhHHHHHHh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLG-VRNLLAFIKE 393 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~G-veeLl~~I~~ 393 (666)
.+.| +++.+. ...+.+||++|.| ++++...+..
T Consensus 144 ~~~~----a~~~~~---~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANM----AKQIGA---ATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHH----HHHcCC---CEEEECCcCCCCCCHHHHHHHHHH
Confidence 3333 345552 2377899999998 9999887754
No 286
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.00 E-value=2.9e-05 Score=91.84 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=47.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.+. ..+. ...++..+.. .+.|+++|+||+|+.... +...++.+...++
T Consensus 95 ~l~~~D~~ilVvda~~g--~~~~--~~~~~~~~~~---------~~~p~ivviNK~D~~~~~-----~~~~~~~i~~~l~ 156 (689)
T TIGR00484 95 SLRVLDGAVAVLDAVGG--VQPQ--SETVWRQANR---------YEVPRIAFVNKMDKTGAN-----FLRVVNQIKQRLG 156 (689)
T ss_pred HHHHhCEEEEEEeCCCC--CChh--HHHHHHHHHH---------cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHhC
Confidence 56678999999999873 2222 2344454443 245889999999998643 1222333333344
Q ss_pred CCCcceEEEEecccCc
Q 005972 367 APKLNGVYLVSARKDL 382 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~ 382 (666)
...+..++++|+.++.
T Consensus 157 ~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 157 ANAVPIQLPIGAEDNF 172 (689)
T ss_pred CCceeEEeccccCCCc
Confidence 3324457788877663
No 287
>PRK10218 GTP-binding protein; Provisional
Probab=98.00 E-value=5.1e-05 Score=88.24 Aligned_cols=97 Identities=21% Similarity=0.105 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|.+++|+|+.+ |..+. .+.++..+.. ...|+++|+||+|+..... ...+..... +...++
T Consensus 88 ~l~~aDg~ILVVDa~~--G~~~q--t~~~l~~a~~---------~gip~IVviNKiD~~~a~~-~~vl~ei~~-l~~~l~ 152 (607)
T PRK10218 88 VMSMVDSVLLVVDAFD--GPMPQ--TRFVTKKAFA---------YGLKPIVVINKVDRPGARP-DWVVDQVFD-LFVNLD 152 (607)
T ss_pred HHHhCCEEEEEEeccc--CccHH--HHHHHHHHHH---------cCCCEEEEEECcCCCCCch-hHHHHHHHH-HHhccC
Confidence 4567999999999987 33332 2333333332 2347899999999864321 112222222 221222
Q ss_pred CCC---cceEEEEecccCc----------ChhhHHHHHHhhcCCC
Q 005972 367 APK---LNGVYLVSARKDL----------GVRNLLAFIKELAGPR 398 (666)
Q Consensus 367 ~~~---~~~V~~VSAkkg~----------GveeLl~~I~~~l~~~ 398 (666)
... --.|+++||++|+ |+..|++.|.+++|..
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 100 0128999999999 5889999998887643
No 288
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.99 E-value=1.1e-05 Score=83.09 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=74.4
Q ss_pred cEEEEeecCCChhhHHHhhhcccccee--ecc----cc------cCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKV--SKL----TE------APIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~~----t~------S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~ 466 (666)
+|+++|.+|+|||||+++|+...+... +.+ +. ....|+|.........+. .++.++||||......
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 588999999999999999987644321 000 11 112344443322222232 3789999999964221
Q ss_pred cccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 467 SMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 467 ~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
......+..+...+.++....+...-...++.++....+. +.+.||++......++.-+-++.+++.
T Consensus 80 ---------~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~---iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 80 ---------EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPT---IIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred ---------HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE---EEEEECccccCCCHHHHHHHHHHHHCC
Confidence 1223456677888888876654332222233333333443 246788887654444454445555554
No 289
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.97 E-value=1.5e-05 Score=73.15 Aligned_cols=56 Identities=30% Similarity=0.328 Sum_probs=41.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+++|.+|+|||||+|+|+... ... +..|++|++........+. .+.++||||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT-----EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC-----cCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 378999999999999999999765 322 3567888887654322332 4688999994
No 290
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.97 E-value=1.1e-05 Score=77.86 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=51.4
Q ss_pred cEEEEeecCCChhhHHHhhhcccccee------ec---ccccCCCCceeEEEEEeeEe------CCceEEEECCCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKV------SK---LTEAPIPGTTLGILRIGGIL------PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~------~~---~t~S~~PGTT~~~~~~~~~l------~~~~~liDTPGi~~~~ 464 (666)
+|.++|.+|||||||+|+|++..+... .. +......|+|.....+...+ .-.+.++||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 789999999999999999987532210 00 00112346665533222111 1246799999986422
Q ss_pred cccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 465 LMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 465 ~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
. ......+..+...++++....
T Consensus 82 ~----------~~~~~~~~ad~~i~v~D~~~~ 103 (179)
T cd01890 82 Y----------EVSRSLAACEGALLLVDATQG 103 (179)
T ss_pred H----------HHHHHHHhcCeEEEEEECCCC
Confidence 1 112234567778888877554
No 291
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.96 E-value=1.5e-05 Score=75.34 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=39.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
+++++|.+|||||||+|+|++..... +..|++|.+.......++. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc------cCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 68999999999999999999754322 3567777665443222332 4689999994
No 292
>PRK12739 elongation factor G; Reviewed
Probab=97.96 E-value=4e-05 Score=90.70 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=48.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.+ |..+. .+.++..+.. .+.|+|+++||+|+.... ....++++...++
T Consensus 93 al~~~D~~ilVvDa~~--g~~~q--t~~i~~~~~~---------~~~p~iv~iNK~D~~~~~-----~~~~~~~i~~~l~ 154 (691)
T PRK12739 93 SLRVLDGAVAVFDAVS--GVEPQ--SETVWRQADK---------YGVPRIVFVNKMDRIGAD-----FFRSVEQIKDRLG 154 (691)
T ss_pred HHHHhCeEEEEEeCCC--CCCHH--HHHHHHHHHH---------cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHhC
Confidence 5678999999999987 33222 3445555543 345789999999998644 2233333333444
Q ss_pred CCCcceEEEEecccCc
Q 005972 367 APKLNGVYLVSARKDL 382 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~ 382 (666)
...+..++++|+..+.
T Consensus 155 ~~~~~~~iPis~~~~f 170 (691)
T PRK12739 155 ANAVPIQLPIGAEDDF 170 (691)
T ss_pred CCceeEEecccccccc
Confidence 3223456777776553
No 293
>PRK00007 elongation factor G; Reviewed
Probab=97.94 E-value=3.1e-05 Score=91.57 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=47.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.. |..++ .+.++..+.+ .+.|+|+++||+|+.... +...++.+.+.++
T Consensus 95 al~~~D~~vlVvda~~--g~~~q--t~~~~~~~~~---------~~~p~iv~vNK~D~~~~~-----~~~~~~~i~~~l~ 156 (693)
T PRK00007 95 SLRVLDGAVAVFDAVG--GVEPQ--SETVWRQADK---------YKVPRIAFVNKMDRTGAD-----FYRVVEQIKDRLG 156 (693)
T ss_pred HHHHcCEEEEEEECCC--Ccchh--hHHHHHHHHH---------cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHhC
Confidence 5667899999999987 33332 3445555544 235789999999998644 2233333434444
Q ss_pred CCCcceEEEEecccC
Q 005972 367 APKLNGVYLVSARKD 381 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg 381 (666)
......++++||.++
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 322334667777666
No 294
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.94 E-value=1.3e-05 Score=82.00 Aligned_cols=63 Identities=30% Similarity=0.247 Sum_probs=45.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccc-cceeecccccCCCCceeEEEEEeeEe----CCceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE-GVKVSKLTEAPIPGTTLGILRIGGIL----PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~-~~~~~~~t~S~~PGTT~~~~~~~~~l----~~~~~liDTPGi~~~~~ 465 (666)
..|.|+|.+++|||||+|.|++.. ...++ +..+.||+++....... +..+.++||||+..+..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~----~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVM----DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEec----CCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 357899999999999999999873 33332 34577898865433222 24689999999987765
No 295
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.93 E-value=5.4e-06 Score=90.55 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
.+.+|+|+|.+|+|||||||+|.+-..-..+.+.+. ...||.....++..--.++.+.|.||+..+.... ..
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~-------~~ 105 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP-------EE 105 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H-------HH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH-------HH
Confidence 467999999999999999999986322111111111 1237777777764333589999999998765421 12
Q ss_pred HHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
++.-.+-...-.|.|-....+...+...+..++..+++.|| +-.+++.
T Consensus 106 Yl~~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyf---VRTKvD~ 153 (376)
T PF05049_consen 106 YLKEVKFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYF---VRTKVDS 153 (376)
T ss_dssp HHHHTTGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEE---EE--HHH
T ss_pred HHHHccccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEE---EEecccc
Confidence 33222211122344444444444444444445555566543 4455554
No 296
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.93 E-value=9.7e-06 Score=81.56 Aligned_cols=88 Identities=25% Similarity=0.240 Sum_probs=57.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceee-c------------------------ccccCCCCceeEEEEEeeEeC-CceE
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVS-K------------------------LTEAPIPGTTLGILRIGGILP-AKAK 453 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~-~------------------------~t~S~~PGTT~~~~~~~~~l~-~~~~ 453 (666)
+|+++|.+|+|||||+|+|+...+.... . ......+|+|++......... .++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4889999999999999999876544221 0 011123889998765443333 3789
Q ss_pred EEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 454 LYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 454 liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
|+||||... + ...+....+..+...++++.....
T Consensus 81 liDTpG~~~-------~---~~~~~~~~~~ad~~llVvD~~~~~ 114 (208)
T cd04166 81 IADTPGHEQ-------Y---TRNMVTGASTADLAILLVDARKGV 114 (208)
T ss_pred EEECCcHHH-------H---HHHHHHhhhhCCEEEEEEECCCCc
Confidence 999999632 1 111233456778888888876543
No 297
>PRK00007 elongation factor G; Reviewed
Probab=97.92 E-value=1.3e-05 Score=94.91 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=83.8
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--ecc----------cccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SKL----------TEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~~----------t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+|+|||||+|+|+...+... +.+ ..-..+|+|++.......+. ..+.++||||....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 4899999999999999999985433210 000 01136788988655544443 47899999996421
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
...+......++...+++++..++.......+..+.....+. +.+.||++.-.....+..+-+++.++.
T Consensus 89 --------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~---iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 89 --------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPR---IAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred --------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCE---EEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 112344566778889999988777666665566655555554 245688886543333343444444443
No 298
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.92 E-value=1.6e-05 Score=81.04 Aligned_cols=82 Identities=32% Similarity=0.437 Sum_probs=52.7
Q ss_pred CcChhhHHHHHHhhcCCC---ccEEEEeecCCChhhHHHhhhccccceeeccccc--CCCCceeEEEEEeeEeC-----C
Q 005972 381 DLGVRNLLAFIKELAGPR---GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTLGILRIGGILP-----A 450 (666)
Q Consensus 381 g~GveeLl~~I~~~l~~~---~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S--~~PGTT~~~~~~~~~l~-----~ 450 (666)
-.|++.+++.+...+-.. -+|++||.++.|||||+|.|+..+....+....+ +.|.|| .+..+...+. -
T Consensus 26 yvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~-eik~~thvieE~gVkl 104 (336)
T KOG1547|consen 26 YVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT-EIKSITHVIEEKGVKL 104 (336)
T ss_pred cccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceE-EEEeeeeeeeecceEE
Confidence 358888888886543222 4899999999999999999998765543222222 344444 2222222121 2
Q ss_pred ceEEEECCCCCCC
Q 005972 451 KAKLYDTPGLLHP 463 (666)
Q Consensus 451 ~~~liDTPGi~~~ 463 (666)
+..+|||||+...
T Consensus 105 kltviDTPGfGDq 117 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQ 117 (336)
T ss_pred EEEEecCCCcccc
Confidence 5689999999754
No 299
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.92 E-value=5.9e-05 Score=87.54 Aligned_cols=92 Identities=26% Similarity=0.391 Sum_probs=53.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC-------------hHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-------------PTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-------------~~~ 353 (666)
....+|++++|+|+.+ |..+.. ...+..+.. .+.|+++|+||+|+.+.... ...
T Consensus 91 ~~~~aD~~IlVvDa~~--g~~~qt--~e~i~~~~~---------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 91 GGALADIAILVVDINE--GFQPQT--IEAINILKR---------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred hHhhCCEEEEEEECCC--CCCHhH--HHHHHHHHH---------cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 4567999999999987 333322 122233332 34589999999999743210 000
Q ss_pred --------HHHHHHHHHHhCCCC-----------CcceEEEEecccCcChhhHHHHHH
Q 005972 354 --------LDRWVRHRAKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 354 --------L~~wl~~~~k~~g~~-----------~~~~V~~VSAkkg~GveeLl~~I~ 392 (666)
+.....++ ...|+. ....++++||++|.|+++|+..+.
T Consensus 158 v~~~f~~~l~ev~~~L-~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 158 VQQELEEKLYELIGQL-SELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHH-HhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00111111 222321 123589999999999999888764
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.92 E-value=1.5e-05 Score=87.45 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=58.6
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccce----------eecccccCCCC---ceeEEEEEee-----E
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPG---TTLGILRIGG-----I 447 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~----------~~~~t~S~~PG---TT~~~~~~~~-----~ 447 (666)
++.+.|.+....+..+++||..|+|||||||++++..... +..-.+++.+| ||++...++. .
T Consensus 5 ~iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~ 84 (492)
T TIGR02836 5 DIYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN 84 (492)
T ss_pred hHHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe
Confidence 4677788777777788899999999999999999873221 11113468899 9998765321 1
Q ss_pred e----CCceEEEECCCCCCCCcc
Q 005972 448 L----PAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 448 l----~~~~~liDTPGi~~~~~~ 466 (666)
. ...+.+|||+|+......
T Consensus 85 ~~~~~~~~VrlIDcvG~~v~Gal 107 (492)
T TIGR02836 85 INEGTKFKVRLVDCVGYTVKGAL 107 (492)
T ss_pred ccCCCcccEEEEECCCcccCCCc
Confidence 1 257899999999876543
No 301
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.91 E-value=9.6e-05 Score=74.49 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=49.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC------CChHHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ------VSPTRLDRWVRH 360 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~------~~~~~L~~wl~~ 360 (666)
....+|.+++|+|+.+... . . ...++..+.. ...|+++|+||+|++..+ ....++..+++.
T Consensus 91 ~~~~aD~~llVvD~~~~~~--~-~-~~~~~~~~~~---------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 91 ALRLSDGVVLVVDVVEGVT--S-N-TERLIRHAIL---------EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred HHHhCCEEEEEEECCCCCC--H-H-HHHHHHHHHH---------cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 4567899999999987431 1 1 1222232221 236899999999987321 112334444433
Q ss_pred H---HHhCCC-------CCcceEEEEecccCcChh
Q 005972 361 R---AKAGGA-------PKLNGVYLVSARKDLGVR 385 (666)
Q Consensus 361 ~---~k~~g~-------~~~~~V~~VSAkkg~Gve 385 (666)
+ .+..+. |--.+|++.||+.+|+..
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 2 222221 112468889999999974
No 302
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.91 E-value=2.3e-05 Score=85.59 Aligned_cols=87 Identities=22% Similarity=0.148 Sum_probs=59.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe------------------CCceEEEECCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------------------PAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l------------------~~~~~liDTPGi 460 (666)
.++++||.||||||||+|+|++..... ++++|.||.+...-...+ +..+.++|.||+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~-----~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGl 77 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNE-----AANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGL 77 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccc-----cCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccc
Confidence 478999999999999999999765323 247788887754321111 235789999999
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecC
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKA 493 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~ 493 (666)
........-| ...++...+..+....+++.
T Consensus 78 v~gAs~g~Gl---gn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 78 VGGASKGEGL---GNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred ccchhcccCc---chHHHHHHHhCCEEEEEEeC
Confidence 9765432222 34566667777777776654
No 303
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=8.2e-05 Score=83.42 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=81.6
Q ss_pred cCCceeecccccceecceecccccccccCch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHH
Q 005972 242 KGEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLE 320 (666)
Q Consensus 242 ~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~ 320 (666)
+++++--|-|.-.-.||+---- .-+..|++ ||....++ +++.|+-+++|||+.. |-.++...... .+++
T Consensus 106 RGITIkaQtasify~~~~~ylL-NLIDTPGHvDFs~EVsR------slaac~G~lLvVDA~q--GvqAQT~anf~-lAfe 175 (650)
T KOG0462|consen 106 RGITIKAQTASIFYKDGQSYLL-NLIDTPGHVDFSGEVSR------SLAACDGALLVVDASQ--GVQAQTVANFY-LAFE 175 (650)
T ss_pred cCcEEEeeeeEEEEEcCCceEE-EeecCCCcccccceehe------hhhhcCceEEEEEcCc--CchHHHHHHHH-HHHH
Confidence 6777777777533222221000 00123765 56544433 5677999999999988 65665544332 2333
Q ss_pred HhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 321 EAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 321 ~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
. +-.+|.|+||||+-.... +++.. +...-++++ ..+++.+||++|+|+++|++.|.+..|+
T Consensus 176 ~----------~L~iIpVlNKIDlp~adp--e~V~~---q~~~lF~~~-~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 176 A----------GLAIIPVLNKIDLPSADP--ERVEN---QLFELFDIP-PAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred c----------CCeEEEeeeccCCCCCCH--HHHHH---HHHHHhcCC-ccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 2 235899999999965432 33333 333344554 5679999999999999999999887664
No 304
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.88 E-value=1.3e-05 Score=83.80 Aligned_cols=133 Identities=15% Similarity=0.113 Sum_probs=69.1
Q ss_pred cEEEEeecCCChhhHHHhhhcccccee--ecc----cccC------CCCceeEEEEEeeEeC-CceEEEECCCCCCCCcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKV--SKL----TEAP------IPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~~----t~S~------~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~ 466 (666)
+|+++|.+|+|||||+|+|+...+... +.+ ++.. ..|.|.........+. ..+.++||||.....
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 478999999999999999986543311 000 1111 1122222211111122 367899999985211
Q ss_pred cccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 467 SMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 467 ~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
..........+...+.+++.......-...++.+.....+.+ .+.|+++......+..-+.++..+|.
T Consensus 79 --------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i---ivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 79 --------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI---IFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred --------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE---EEEECCccCCCCHHHHHHHHHHHhCC
Confidence 112234456677778887765443332222223333333432 35678886654444444445554443
No 305
>PTZ00099 rab6; Provisional
Probab=97.87 E-value=0.00011 Score=72.39 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|++|+|+|+.+... + ..+... +..+.+. .....|++||+||+||... .........|. +..
T Consensus 49 ~~~~ad~~ilv~D~t~~~s-f-~~~~~w-~~~i~~~------~~~~~piilVgNK~DL~~~~~v~~~e~~~~~----~~~ 115 (176)
T PTZ00099 49 YIRDSAAAIVVYDITNRQS-F-ENTTKW-IQDILNE------RGKDVIIALVGNKTDLGDLRKVTYEEGMQKA----QEY 115 (176)
T ss_pred HhCCCcEEEEEEECCCHHH-H-HHHHHH-HHHHHHh------cCCCCeEEEEEECcccccccCCCHHHHHHHH----HHc
Confidence 4567999999999988431 1 122222 2222221 1134578999999999642 22322333332 333
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
+. .++.+||++|.|++++++.|.+.+++
T Consensus 116 ~~----~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 116 NT----MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 42 36789999999999999999876543
No 306
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.86 E-value=0.00012 Score=69.36 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=57.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-CCCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~g 366 (666)
..++|.++++.|..+... ......+++.+... .....|++||.||.|+.. .....+....|. +.++
T Consensus 69 ~~~~~~~ii~fd~~~~~S---~~~~~~~~~~i~~~------~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~----~~~~ 135 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEES---FENLKKWLEEIQKY------KPEDIPIIVVGNKSDLSDEREVSVEEAQEFA----KELG 135 (162)
T ss_dssp HTTESEEEEEEETTBHHH---HHTHHHHHHHHHHH------STTTSEEEEEEETTTGGGGSSSCHHHHHHHH----HHTT
T ss_pred cccccccccccccccccc---cccccccccccccc------ccccccceeeeccccccccccchhhHHHHHH----HHhC
Confidence 456899999999987421 11111223333322 112468999999999986 444444445443 4555
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. ..+.+||+++.|+.+++..+.+
T Consensus 136 ~----~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 136 V----PYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp S----EEEEEBTTTTTTHHHHHHHHHH
T ss_pred C----EEEEEECCCCCCHHHHHHHHHH
Confidence 3 3788999999999998887754
No 307
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.86 E-value=3e-05 Score=82.69 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=60.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee------------------EeCCceEEEECCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG------------------ILPAKAKLYDTPG 459 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~------------------~l~~~~~liDTPG 459 (666)
...++|||.||||||||+|+|++.... ..++|-+|.+...-.. ..+...+++|+.|
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~------~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAG------AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCC------ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 348999999999999999999976533 3589999999654321 1234679999999
Q ss_pred CCCCCcccccCChhhHHHHHhhhhcCceeEEec
Q 005972 460 LLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVK 492 (666)
Q Consensus 460 i~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~ 492 (666)
+......-.=| ..+++.-.+.++.....|+
T Consensus 94 LvkGAs~G~GL---GN~FLs~iR~vDaifhVVr 123 (391)
T KOG1491|consen 94 LVKGASAGEGL---GNKFLSHIRHVDAIFHVVR 123 (391)
T ss_pred cccCcccCcCc---hHHHHHhhhhccceeEEEE
Confidence 99876644333 4566666666666544443
No 308
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=7.6e-05 Score=82.54 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=92.0
Q ss_pred hHHHH-HHHhhhhhhHHHHHHHHHHHh-------hhcCCceeecccccceecceecccccccc---cCch-hHHHHHHHH
Q 005972 214 TEELV-ERSKKKKLSKAERKKKAREAQ-------KEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF-DFDRVIATR 281 (666)
Q Consensus 214 g~slL-n~l~~~K~si~~rk~~a~~a~-------~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~-d~~~~L~~~ 281 (666)
||||| -|+...--...+|.-++ +. .+++.+.--|-|.-.-.+.. .+..... .|++ ||.-..++
T Consensus 21 GKSTLaDRlle~t~~~~~Rem~~--Q~LDsMdiERERGITIKaq~v~l~Yk~~~--g~~Y~lnlIDTPGHVDFsYEVSR- 95 (603)
T COG0481 21 GKSTLADRLLELTGGLSEREMRA--QVLDSMDIERERGITIKAQAVRLNYKAKD--GETYVLNLIDTPGHVDFSYEVSR- 95 (603)
T ss_pred CcchHHHHHHHHhcCcChHHHHH--HhhhhhhhHhhcCceEEeeEEEEEEEeCC--CCEEEEEEcCCCCccceEEEehh-
Confidence 66666 77777654444443321 22 23566666666653211111 0111111 2654 34322332
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR 361 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~ 361 (666)
+++.|.-.++|||+.. |-..+.+.+.. .+|. .+-.+|-|+|||||-..+. ++..++.
T Consensus 96 -----SLAACEGalLvVDAsQ--GveAQTlAN~Y-lAle----------~~LeIiPViNKIDLP~Adp-----ervk~eI 152 (603)
T COG0481 96 -----SLAACEGALLVVDASQ--GVEAQTLANVY-LALE----------NNLEIIPVLNKIDLPAADP-----ERVKQEI 152 (603)
T ss_pred -----hHhhCCCcEEEEECcc--chHHHHHHHHH-HHHH----------cCcEEEEeeecccCCCCCH-----HHHHHHH
Confidence 4566888999999988 65555444332 2333 2346899999999965442 3333333
Q ss_pred HHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 362 AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 362 ~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
..-+|++ ..+++.+|||+|.|++++++.|.+..|+
T Consensus 153 e~~iGid-~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 153 EDIIGID-ASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHHhCCC-cchheeEecccCCCHHHHHHHHHhhCCC
Confidence 3456775 6779999999999999999999888764
No 309
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.85 E-value=2.4e-05 Score=82.16 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=70.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceee----------cccccCC------CCceeEEEEEeeEe-CCceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS----------KLTEAPI------PGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~----------~~t~S~~------PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
++|.++|.+|+|||||+|+|+...+.... ..+++++ .|.|.........+ +..+.++||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999865443211 0111111 12222221111112 2367999999975
Q ss_pred CCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHh
Q 005972 462 HPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKN 541 (666)
Q Consensus 462 ~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k 541 (666)
.... ......+..+...++++....+..+-...+...+....++ +.+.|+++.......++.+-++.
T Consensus 83 df~~----------~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~---iivvNK~D~~~a~~~~~~~~l~~ 149 (267)
T cd04169 83 DFSE----------DTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI---ITFINKLDREGRDPLELLDEIEE 149 (267)
T ss_pred HHHH----------HHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE---EEEEECCccCCCCHHHHHHHHHH
Confidence 3211 1223345678888888876554332222223333223343 33568888654443333344455
Q ss_pred hcCC
Q 005972 542 HVGI 545 (666)
Q Consensus 542 ~~g~ 545 (666)
.+|.
T Consensus 150 ~l~~ 153 (267)
T cd04169 150 ELGI 153 (267)
T ss_pred HHCC
Confidence 5554
No 310
>PTZ00258 GTP-binding protein; Provisional
Probab=97.82 E-value=9.7e-05 Score=81.50 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCcEEEEEECC--CCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhH------HHHHHhhcCCCccEEE
Q 005972 332 LPKLVLVGTKV--DLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNL------LAFIKELAGPRGNVWV 403 (666)
Q Consensus 332 ~kpvILVlNKi--DLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeL------l~~I~~~l~~~~~v~v 403 (666)
.+|+++|+||. |+++... ..+... +.+....+ -..++++||+-..-+.+| .+++..+
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~--~~~~~l-~~~~~~~~---~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~--------- 284 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKN--KWLAKI-KEWVGEKG---GGPIIPYSAEFEEELAELGSEEERKEYLEEY--------- 284 (390)
T ss_pred cCCEEEEEECchhhhcccch--HHHHHH-HHHHHhcC---CCeEEEeeHHHHHHHHhcCCHHHHHHHHHHc---------
Confidence 47899999999 8743321 122222 22222332 123889998776533333 3444443
Q ss_pred EeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCc
Q 005972 404 IGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 404 vG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
|....|--.++++....-+..+ -.|+. |-.++- ..++.+.+..|..|..+.+.
T Consensus 285 -g~~~~gl~~li~~~~~lL~li~-ffT~g--~~e~ra-----w~i~~Gsta~~aAg~IHsD~ 337 (390)
T PTZ00258 285 -GIKQSMLDKIIKTGYKLLNLIH-FFTAG--PDEVRC-----WTIQKGTKAPQAAGVIHSDF 337 (390)
T ss_pred -CCCcccHHHHHHHHHHHhCCEE-EEcCC--CCceeE-----EEeCCCCcHHHHHhhhhhHH
Confidence 4555677778888774433321 12221 122322 22455666677777665443
No 311
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.82 E-value=0.00045 Score=69.44 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=67.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+++|+|+.+... + ..+ ..++..+.+. . .+.|+++|+||+|+......... ..+ .+..+.
T Consensus 79 ~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~------~-~~~~i~lv~nK~Dl~~~~~~~~~-~~~----~~~~~~ 143 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRIT-Y-KNV-PNWHRDIVRV------C-ENIPIVLVGNKVDVKDRQVKARQ-ITF----HRKKNL 143 (215)
T ss_pred hccCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------C-CCCCEEEEEECccCccccCCHHH-HHH----HHHcCC
Confidence 346789999999986321 1 111 1122222221 1 34689999999999754432221 222 233342
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecC-----CChhhHHH
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQN-----AGKSTLIN 416 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~N-----VGKSTLiN 416 (666)
..+.+||++|.|+++++..|...+-....++++.-|- +|-.....
T Consensus 144 ----~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 144 ----QYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence 3789999999999998888776655555777777766 55544433
No 312
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.82 E-value=2e-05 Score=87.94 Aligned_cols=88 Identities=22% Similarity=0.179 Sum_probs=58.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeec--------------c-----------cccCCCCceeEEEEEeeEeC-Cc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSK--------------L-----------TEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~--------------~-----------t~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
..++.++|.+|+|||||+|+|+...+..... . .....+|+|++........+ ..
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~ 85 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYY 85 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeE
Confidence 4689999999999999999999665432211 0 01126999999876553332 36
Q ss_pred eEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCC
Q 005972 452 AKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 452 ~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~ 495 (666)
+.++||||..... ..+.......+...+.++...
T Consensus 86 i~liDtpG~~~~~----------~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 86 FTIVDCPGHRDFV----------KNMITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEEECCCcccch----------hhHhhchhcCCEEEEEEEccc
Confidence 7999999953211 112233456788888888765
No 313
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.81 E-value=0.00014 Score=74.45 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=30.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL 345 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL 345 (666)
++..+|.+++|+|+... ..+. .+.++..... ...|+|+|+||+|++
T Consensus 93 ~l~~aD~~ilVvD~~~g--~~~~--t~~~l~~~~~---------~~~p~ilviNKiD~~ 138 (222)
T cd01885 93 ALRLCDGALVVVDAVEG--VCVQ--TETVLRQALK---------ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHhcCeeEEEEECCCC--CCHH--HHHHHHHHHH---------cCCCEEEEEECCCcc
Confidence 45679999999999873 3222 1223332222 235799999999986
No 314
>PRK12739 elongation factor G; Reviewed
Probab=97.80 E-value=2.3e-05 Score=92.76 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=75.0
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--ec----------ccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SK----------LTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~----------~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+|+|.+|+|||||+|+|+...+... +. ...-..+|+|++.......++ .++.++||||....
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f-- 86 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF-- 86 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH--
Confidence 4799999999999999999986432210 00 001136788888655544443 36899999997531
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHL 529 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~ 529 (666)
..........++...+++++...+.......+..+.....+.+ .+.||++...
T Consensus 87 --------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i---v~iNK~D~~~ 139 (691)
T PRK12739 87 --------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI---VFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE---EEEECCCCCC
Confidence 1123445677788999999877665554444444444444542 4567887653
No 315
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.80 E-value=0.00032 Score=71.84 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=54.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH---------HHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR---------LDRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~---------L~~w 357 (666)
...++|++++|+|+.+... + ..+...+...+... . ...|+|||.||+||......... -..-
T Consensus 69 ~~~~~d~illvfdis~~~S-f-~~i~~~w~~~~~~~------~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~ 139 (222)
T cd04173 69 AYPDSDAVLICFDISRPET-L-DSVLKKWQGETQEF------C-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQ 139 (222)
T ss_pred hccCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHH
Confidence 4568999999999988531 1 11212222222211 1 34689999999999642110000 0011
Q ss_pred HHHHHHhCCCCCcceEEEEecccCc-ChhhHHHHHHh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDL-GVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~-GveeLl~~I~~ 393 (666)
...+.++.|. ...+-+||+++. |+++++.....
T Consensus 140 g~~~ak~~~~---~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 140 GTVLAKQVGA---VSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHcCC---CEEEEcCCCcCCcCHHHHHHHHHH
Confidence 1223345552 247789999988 49999887654
No 316
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.79 E-value=4.5e-05 Score=79.47 Aligned_cols=111 Identities=19% Similarity=0.131 Sum_probs=71.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhh---
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDE--- 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~--- 474 (666)
+..+.++|.+|||||||||.++...... .+.+..||-|+.+..+. ++..++++|.||+.....-. .+..+-
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~---~t~k~K~g~Tq~in~f~--v~~~~~~vDlPG~~~a~y~~-~~~~d~~~~ 209 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIA---DTSKSKNGKTQAINHFH--VGKSWYEVDLPGYGRAGYGF-ELPADWDKF 209 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhh---hhcCCCCccceeeeeee--ccceEEEEecCCcccccCCc-cCcchHhHh
Confidence 3578999999999999999999766442 34456999998877665 56789999999976544322 222221
Q ss_pred -HHHHHhhhhcCceeEEecCCCcccccceEEEeecccccce
Q 005972 475 -QKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVET 514 (666)
Q Consensus 475 -~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~ 514 (666)
+.+..-++.+..+...++..-.+-.-++..+.++.....+
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP 250 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP 250 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC
Confidence 2233334444444445555555555566666666554444
No 317
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.79 E-value=3.3e-05 Score=74.07 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEeecCCChhhHHHhhhccccc
Q 005972 401 VWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~~~~ 424 (666)
|+|+|..++|||||||+|++....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~il 24 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPIL 24 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-S
T ss_pred CEEEcCCCCCHHHHHHHHHhcccC
Confidence 689999999999999999987643
No 318
>PRK12740 elongation factor G; Reviewed
Probab=97.78 E-value=0.00019 Score=84.58 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.1
Q ss_pred EEEEecccCcChhhHHHHHHhhcCCC
Q 005972 373 VYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 373 V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
|++.||++|.|++.|++.|..++|..
T Consensus 239 v~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 239 VFCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred EEeccccCCccHHHHHHHHHHHCCCh
Confidence 67889999999999999999988755
No 319
>PRK09866 hypothetical protein; Provisional
Probab=97.78 E-value=6.5e-05 Score=86.46 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=49.5
Q ss_pred CceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccc--eEEEEEecCCcccc
Q 005972 450 AKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVE--TIYVTVWASPNVSL 527 (666)
Q Consensus 450 ~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~--~v~~~v~~s~~l~~ 527 (666)
.++.++||||+..+.... | ...+....++.+.+.|+++..+....++...+..++...+ ++ +++.||++.
T Consensus 230 ~QIIFVDTPGIhk~~~~~--L---~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PV---ILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPH--L---QKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPL---YVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchH--H---HHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCE---EEEEEcccC
Confidence 467899999999775421 2 2334456788899999999887777777666666665443 54 356688886
Q ss_pred c
Q 005972 528 H 528 (666)
Q Consensus 528 h 528 (666)
.
T Consensus 302 ~ 302 (741)
T PRK09866 302 Q 302 (741)
T ss_pred C
Confidence 4
No 320
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00018 Score=80.84 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=70.0
Q ss_pred CchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|++.-...|..+ ..+-+|++++|||+.| |..|+.++.. ++++. .+.|+|+++||+|+.+.+-
T Consensus 63 PGHeAFt~mRaR-----Ga~vtDIaILVVa~dD--Gv~pQTiEAI--~hak~---------a~vP~iVAiNKiDk~~~np 124 (509)
T COG0532 63 PGHEAFTAMRAR-----GASVTDIAILVVAADD--GVMPQTIEAI--NHAKA---------AGVPIVVAINKIDKPEANP 124 (509)
T ss_pred CcHHHHHHHHhc-----CCccccEEEEEEEccC--CcchhHHHHH--HHHHH---------CCCCEEEEEecccCCCCCH
Confidence 888777777655 5667999999999998 8888765422 34443 3569999999999985432
Q ss_pred ChHHHHHHHHHHHHhCCCC-----CcceEEEEecccCcChhhHHHHHHhh
Q 005972 350 SPTRLDRWVRHRAKAGGAP-----KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 ~~~~L~~wl~~~~k~~g~~-----~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++..- + .+.|+. .-..++++||++|.|+++|+..|.-.
T Consensus 125 --~~v~~e---l-~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 125 --DKVKQE---L-QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred --HHHHHH---H-HHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 222211 1 122321 12458899999999999999988543
No 321
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.77 E-value=3.7e-05 Score=81.35 Aligned_cols=89 Identities=24% Similarity=0.225 Sum_probs=61.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
-+|.+||.||+|||||+|+|...+- .+.+++-||+...--....+ .++.+-|.|||.....+.-=| ...
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp------kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl---G~~ 267 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP------KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL---GYK 267 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC------cccccceeeeccccceeeccccceeEeccCccccccccccCcc---cHH
Confidence 3789999999999999999986542 33588889987532211111 258999999999887755333 344
Q ss_pred HHHhhhhcCceeEEecCCCc
Q 005972 477 MVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~ 496 (666)
++.-..+.+.-.|+++-...
T Consensus 268 FLrHiER~~~l~fVvD~s~~ 287 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGK 287 (366)
T ss_pred HHHHHHhhceEEEEEECCCc
Confidence 55445555666788876554
No 322
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.76 E-value=3e-05 Score=77.73 Aligned_cols=117 Identities=20% Similarity=0.125 Sum_probs=70.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccce----------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~----------~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~ 467 (666)
.+++++|.+|+|||||+++|+...... ......-..+|+|.+........ +.++.++||||....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 579999999999999999998641100 00001113678998875544322 236799999998521
Q ss_pred ccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 468 MRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 468 ~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
...+.......+...+.+++..++.......+..+.....+.+ +.+.|+++.
T Consensus 79 ------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~i--IvviNK~D~ 130 (195)
T cd01884 79 ------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYI--VVFLNKADM 130 (195)
T ss_pred ------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcE--EEEEeCCCC
Confidence 1122344566788888998877654443333444443333311 234577775
No 323
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.76 E-value=2.7e-05 Score=76.88 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=54.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccc-eeecccccCCCCceeEEEEEeeEe---------------CCceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGV-KVSKLTEAPIPGTTLGILRIGGIL---------------PAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~-~~~~~t~S~~PGTT~~~~~~~~~l---------------~~~~~liDTPGi~~~ 463 (666)
+|+++|.+|||||||+|+|+..... .......+..+|+|.+.......+ ...+.++||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 6899999999999999999964211 011112234678888764332222 23679999999731
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
+ ...+......++...++++.....
T Consensus 81 ------~---~~~~~~~~~~~d~vi~VvD~~~~~ 105 (192)
T cd01889 81 ------L---IRTIIGGAQIIDLMLLVVDATKGI 105 (192)
T ss_pred ------H---HHHHHHHHhhCCEEEEEEECCCCc
Confidence 1 112223345567788888876543
No 324
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.75 E-value=3e-05 Score=76.68 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=51.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeeccc----------ccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT----------EAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t----------~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~ 467 (666)
.+|+++|.+|||||||+|+|+...+......+ .....|+|.+........ ...+.++||||......
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-- 80 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG-- 80 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH--
Confidence 37999999999999999999963221110000 012356665543322112 23678999999753211
Q ss_pred ccCChhhHHHHHhhhhcCceeEEecCCC
Q 005972 468 MRLNRDEQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 468 ~~L~~~~~~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...++++...
T Consensus 81 --------~~~~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 81 --------EVERVLSMVDGVLLLVDASE 100 (194)
T ss_pred --------HHHHHHHhcCEEEEEEECCC
Confidence 12234566777788777654
No 325
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.75 E-value=0.00027 Score=79.54 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=49.8
Q ss_pred cccccCEEEEEEecCCCCCCC-------cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC--CCC-CChHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMF-------PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL--PSQ-VSPTRLDR 356 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~-------p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL--pk~-~~~~~L~~ 356 (666)
++..+|++++|||+.. |.+ ++. .+ .+..+... +.+++|+++||+|+. ... .....+..
T Consensus 105 g~~~aD~ailVVda~~--G~~e~~~~~~~qT-~e-h~~~~~~~--------gi~~iiv~vNKmD~~~~~~~~~~~~~i~~ 172 (446)
T PTZ00141 105 GTSQADVAILVVASTA--GEFEAGISKDGQT-RE-HALLAFTL--------GVKQMIVCINKMDDKTVNYSQERYDEIKK 172 (446)
T ss_pred hhhhcCEEEEEEEcCC--CceecccCCCccH-HH-HHHHHHHc--------CCCeEEEEEEccccccchhhHHHHHHHHH
Confidence 5667999999999987 321 221 11 22223321 334578999999953 221 11122222
Q ss_pred HHHHHHHhCCCCC-cceEEEEecccCcChhh
Q 005972 357 WVRHRAKAGGAPK-LNGVYLVSARKDLGVRN 386 (666)
Q Consensus 357 wl~~~~k~~g~~~-~~~V~~VSAkkg~Gvee 386 (666)
-++.+....|+.. -..++++||.+|.|+.+
T Consensus 173 ~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 173 EVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2333344455421 13489999999999864
No 326
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.74 E-value=5.5e-05 Score=71.51 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=37.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+|++++.... +..++|+.+.......+.. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-------TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-------cccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 47999999999999999999865321 2444555443322222333 46789999964
No 327
>PRK13768 GTPase; Provisional
Probab=97.72 E-value=0.00021 Score=74.56 Aligned_cols=97 Identities=26% Similarity=0.245 Sum_probs=60.2
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH----------
Q 005972 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH---------- 360 (666)
Q Consensus 291 aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~---------- 360 (666)
.++|++|+|++... .+.+.... .++.... ... ...|+++|+||+|+++.... ..+..+++.
T Consensus 129 ~~~ii~liD~~~~~--~~~d~~~~--~~l~~~~---~~~-~~~~~i~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~ 199 (253)
T PRK13768 129 KSVVVFLIDAVLAK--TPSDFVSL--LLLALSV---QLR-LGLPQIPVLNKADLLSEEEL-ERILKWLEDPEYLLEELKL 199 (253)
T ss_pred CeEEEEEechHHhC--CHHHHHHH--HHHHHHH---HHH-cCCCEEEEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhc
Confidence 78999999998733 33222211 1121100 000 24689999999999976542 223333321
Q ss_pred --------------HHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 361 --------------RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 361 --------------~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.+++.+. ...++++||+++.|+++|++.|.++++..
T Consensus 200 ~~~~~~~~~~~~~~~i~~~~~--~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 200 EKGLQGLLSLELLRALEETGL--PVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred ccchHHHHHHHHHHHHHHHCC--CCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 1223331 34689999999999999999999987644
No 328
>CHL00071 tufA elongation factor Tu
Probab=97.71 E-value=5.2e-05 Score=84.34 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCccEEEEeecCCChhhHHHhhhcccccee----------ecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKV----------SKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~----------~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
+..++.++|.+|+|||||+|+|++..+... ........+|+|++........+ .++.++||||.. ..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--~~ 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--DY 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH--HH
Confidence 346899999999999999999997533211 11122234899999765443222 367899999943 11
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
...+.......+...+.+++..++.-.....+..+.....+.+ +.+.||++.
T Consensus 89 --------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~i--IvvvNK~D~ 140 (409)
T CHL00071 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNI--VVFLNKEDQ 140 (409)
T ss_pred --------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE--EEEEEccCC
Confidence 1223344567788899998876654433333444433333311 234577775
No 329
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.71 E-value=6.2e-05 Score=72.51 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=46.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|+++|.+|||||||+|+|.+.... ..+|..+ .+. .. .++||||....+.. ....+..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~----------~~~~~~v-~~~----~~-~~iDtpG~~~~~~~------~~~~~~~ 60 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL----------ARKTQAV-EFN----DK-GDIDTPGEYFSHPR------WYHALIT 60 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc----------CccceEE-EEC----CC-CcccCCccccCCHH------HHHHHHH
Confidence 6899999999999999999865311 1233332 111 11 37999998544321 1222334
Q ss_pred hhhhcCceeEEecCCCc
Q 005972 480 IRKELQPRTYRVKARQA 496 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~~ 496 (666)
..+..+...+.++....
T Consensus 61 ~~~~ad~il~v~d~~~~ 77 (158)
T PRK15467 61 TLQDVDMLIYVHGANDP 77 (158)
T ss_pred HHhcCCEEEEEEeCCCc
Confidence 45677888888877543
No 330
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.70 E-value=0.00011 Score=85.42 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=52.0
Q ss_pred eecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHHHH--hh
Q 005972 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKMVE--IR 481 (666)
Q Consensus 405 G~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~~~--~~ 481 (666)
|.||||||||+|+|++... .++++||+|.+.......++ .++.++||||....... +.++..... ..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~----s~~e~v~~~~l~~ 70 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF----SLEEEVARDYLLN 70 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC------eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCcc----chHHHHHHHHHhh
Confidence 8899999999999997542 24689999998765433333 36789999999754332 122211111 12
Q ss_pred hhcCceeEEecCCC
Q 005972 482 KELQPRTYRVKARQ 495 (666)
Q Consensus 482 kel~~~~f~l~~~~ 495 (666)
...+.+.+.++..+
T Consensus 71 ~~aDvvI~VvDat~ 84 (591)
T TIGR00437 71 EKPDLVVNVVDASN 84 (591)
T ss_pred cCCCEEEEEecCCc
Confidence 34566677777643
No 331
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.69 E-value=7.6e-05 Score=70.98 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=36.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+|+|++..... ...|.++.+........+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 378999999999999999998654321 1234433333222111222 46899999964
No 332
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.69 E-value=0.00057 Score=78.50 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=31.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP 346 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp 346 (666)
++..+|.+++|+|+.+ |... ..+.++...+. .+.|+++++||+|+..
T Consensus 99 ~l~~aD~aIlVvDa~~--gv~~--~t~~l~~~~~~---------~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 99 TLTAVDSALMVIDAAK--GVEP--QTRKLMEVCRL---------RDTPIFTFINKLDRDG 145 (526)
T ss_pred HHHHCCEEEEEEecCC--CCCH--HHHHHHHHHHh---------cCCCEEEEEECCcccc
Confidence 4556899999999987 3222 12344443332 3468999999999864
No 333
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.68 E-value=0.00013 Score=67.88 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=59.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|.++|.+|||||||+|+|++... ..+. |... . +. ..++||||...... .....+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---------~~~~-t~~~-~----~~--~~~iDt~G~~~~~~------~~~~~~~~ 58 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---------LYKK-TQAV-E----YN--DGAIDTPGEYVENR------RLYSALIV 58 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---------cccc-ceeE-E----Ec--CeeecCchhhhhhH------HHHHHHHH
Confidence 589999999999999999987542 1111 2221 1 11 26899999731100 00112223
Q ss_pred hhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccc--cccccHHHHHHh
Q 005972 480 IRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHL--GKIENADEIWKN 541 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~--tk~e~a~e~~~k 541 (666)
..+..+...++++...........+++.+. .+++ .+.|++++.. ...+.+.+++++
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~~---~p~i---lv~NK~Dl~~~~~~~~~~~~~~~~ 116 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPPGFASIFV---KPVI---GLVTKIDLAEADVDIERAKELLET 116 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCChhHHHhcc---CCeE---EEEEeeccCCcccCHHHHHHHHHH
Confidence 356777777777764433332233333322 2432 3447877642 122344455544
No 334
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.68 E-value=2.5e-05 Score=86.71 Aligned_cols=86 Identities=24% Similarity=0.248 Sum_probs=56.4
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChh
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRD 473 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~ 473 (666)
+..+..++|+||||||||+|.+.... . .+.++|-||+.+.-. -++ -.+.++|||||...-.... +..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad-v-----evqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdr--N~I 236 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD-D-----EVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDR--NII 236 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc-c-----ccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhh--hHH
Confidence 45689999999999999999887543 2 334888899875321 111 2578999999997655332 333
Q ss_pred hHHHHHhhhhcCc-eeEEec
Q 005972 474 EQKMVEIRKELQP-RTYRVK 492 (666)
Q Consensus 474 ~~~~~~~~kel~~-~~f~l~ 492 (666)
++..+.....++. ..|.++
T Consensus 237 EmqsITALAHLraaVLYfmD 256 (620)
T KOG1490|consen 237 EMQIITALAHLRSAVLYFMD 256 (620)
T ss_pred HHHHHHHHHHhhhhheeeee
Confidence 5555555555544 345444
No 335
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.67 E-value=7e-05 Score=80.13 Aligned_cols=85 Identities=22% Similarity=0.132 Sum_probs=54.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE--eCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI--LPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~--l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
+|.+||.||+|||||||++...+ ..+.++|-||+....-... ....+.+-|.||+......-.=| ...+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak------PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL---G~~F 231 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK------PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL---GLRF 231 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC------CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc---cHHH
Confidence 68899999999999999998543 3446899999874321111 23468999999999765543323 2333
Q ss_pred HHhhhhcCceeEEecC
Q 005972 478 VEIRKELQPRTYRVKA 493 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~ 493 (666)
+.-..+-+...+.++.
T Consensus 232 LrHIERt~vL~hviD~ 247 (369)
T COG0536 232 LRHIERTRVLLHVIDL 247 (369)
T ss_pred HHHHHhhheeEEEEec
Confidence 3333333444555543
No 336
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.67 E-value=0.00013 Score=84.74 Aligned_cols=124 Identities=17% Similarity=0.097 Sum_probs=69.1
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-C-ceEEEECCCCCCCCcccccCChhh
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-A-KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~-~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
....|.++|.+|+|||||+|+|.+.... ....+|+|.+.-.....++ . .+.++||||......+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~-------- 151 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM-------- 151 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc------cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH--------
Confidence 3468999999999999999999865422 1346788887644433332 3 6899999996432211
Q ss_pred HHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHH
Q 005972 475 QKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIW 539 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~ 539 (666)
........+...+.++........-+..+...+....++ +.+.|+++......+++.+.+
T Consensus 152 --r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPi---IVviNKiDl~~~~~e~v~~~L 211 (587)
T TIGR00487 152 --RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI---IVAINKIDKPEANPDRVKQEL 211 (587)
T ss_pred --HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE---EEEEECcccccCCHHHHHHHH
Confidence 112234445566666655433222221222222223343 345677776533333443333
No 337
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.66 E-value=8.5e-05 Score=78.44 Aligned_cols=65 Identities=28% Similarity=0.273 Sum_probs=39.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecc---cccCCCCce-eEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKL---TEAPIPGTT-LGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~---t~S~~PGTT-~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+++++|.+|+|||||+|+|++......... +....+.|+ ..........++ ++.++||||+...
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 4789999999999999999998654332100 001133333 222222211121 5799999999754
No 338
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.66 E-value=7.7e-05 Score=69.94 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=35.1
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|++..... ..+.|+.+.......++. .+.++||||-.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVD-------EYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcC-------CcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 68999999999999999999654221 223333332222222332 35689999964
No 339
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.64 E-value=6.5e-05 Score=71.47 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=46.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|+++|.+|||||||+|+|+........ .....+.+|.+.......+ +..+.++||||...... ...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG--LPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS----------LWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC--CcccccCCccccceEEEEECCEEEEEEECCCChhhHH----------HHH
Confidence 4789999999999999999864321000 0012223333321111112 23678999999753211 111
Q ss_pred HhhhhcCceeEEecCCC
Q 005972 479 EIRKELQPRTYRVKARQ 495 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~ 495 (666)
...+..+...|.++..+
T Consensus 69 ~~~~~~~~~v~vvd~~~ 85 (167)
T cd04160 69 KYYAECHAIIYVIDSTD 85 (167)
T ss_pred HHhCCCCEEEEEEECch
Confidence 23455666777777543
No 340
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.64 E-value=0.00011 Score=70.49 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=38.9
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
...+++++|.+|||||||+|+|.+..... ..+..|.+...+... +..+.++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g~~~~~i~~~---~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQGFNIKTVQSD---GFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCCcceEEEEEC---CEEEEEEECCCCH
Confidence 35689999999999999999999753211 123445544443332 2357899999964
No 341
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.63 E-value=0.00012 Score=72.02 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhH
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
....+++++|.+|||||||+|+|.+...... .+..+.|...+.+. +..+.++||||......
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~---------- 76 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAIG---NIKFTTFDLGGHQQARR---------- 76 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEEC---CEEEEEEECCCCHHHHH----------
Confidence 3457899999999999999999987532211 12223232222221 23578999999753211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...|.++..+
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~ 96 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYD 96 (184)
T ss_pred HHHHHhCCCCEEEEEEECCc
Confidence 11233456777888887643
No 342
>PRK13351 elongation factor G; Reviewed
Probab=97.62 E-value=0.00052 Score=81.27 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred EEEEecccCcChhhHHHHHHhhcCCC
Q 005972 373 VYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 373 V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
|++.||+++.|++.|++.|..++|..
T Consensus 255 V~~gSA~~~~Gv~~LLd~I~~~lPsP 280 (687)
T PRK13351 255 VLFGSALKNIGIEPLLDAVVDYLPSP 280 (687)
T ss_pred EEecccCcCccHHHHHHHHHHHCCCh
Confidence 66779999999999999999887764
No 343
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.62 E-value=0.00012 Score=67.75 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=48.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~-l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|.++|.+|||||||+|+|++...... .....|.+.....+... ..-.+.++||||...... ...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS----------ITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH----------HHH
Confidence 689999999999999999986553321 01222333333222210 012568999999732111 122
Q ss_pred HhhhhcCceeEEecCCC
Q 005972 479 EIRKELQPRTYRVKARQ 495 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~ 495 (666)
...+..+...+.++...
T Consensus 68 ~~~~~~d~ii~v~d~~~ 84 (159)
T cd00154 68 SYYRGAHGAILVYDITN 84 (159)
T ss_pred HHhcCCCEEEEEEECCC
Confidence 34456777777777654
No 344
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.60 E-value=0.00029 Score=67.11 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=89.7
Q ss_pred eccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHHhcCc
Q 005972 207 GVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKP 285 (666)
Q Consensus 207 ~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P 285 (666)
.||-.|.||+++ |.+..-. -.....=++-++.+.|.+-.-.-.-..+|+..-.+.|..+.-+
T Consensus 25 lvGLq~sGKtt~Vn~ia~g~----------------~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR- 87 (186)
T KOG0075|consen 25 LVGLQNSGKTTLVNVIARGQ----------------YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR- 87 (186)
T ss_pred EEeeccCCcceEEEEEeecc----------------chhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh-
Confidence 589999998887 5222111 1122334556777766543211111223665555666666444
Q ss_pred ccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhC
Q 005972 286 SGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 286 ~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
.+++|+++||+.|++ ... ...+.+...|.+. .+ ...|++++.||+|+-..-.. ...+ ..+
T Consensus 88 ----~v~aivY~VDaad~~-k~~-~sr~EL~~LL~k~----~l--~gip~LVLGnK~d~~~AL~~----~~li----~rm 147 (186)
T KOG0075|consen 88 ----GVSAIVYVVDAADPD-KLE-ASRSELHDLLDKP----SL--TGIPLLVLGNKIDLPGALSK----IALI----ERM 147 (186)
T ss_pred ----cCcEEEEEeecCCcc-cch-hhHHHHHHHhcch----hh--cCCcEEEecccccCcccccH----HHHH----HHh
Confidence 689999999999954 332 2233444444331 11 34689999999998544221 1111 334
Q ss_pred CCCCc----ceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKL----NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~----~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
|+..+ .-.|.||++...+++.+++.|.+.
T Consensus 148 gL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 148 GLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred CccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 54322 236889999999999999999775
No 345
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.60 E-value=8.6e-05 Score=70.40 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=36.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+|++..... ..+.|+.+.......++. .+.++||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-------DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-------ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999998654221 223344333222222222 457899999654
No 346
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.59 E-value=0.00013 Score=70.87 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=48.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|+...... ..+..|.+.....+. +..+.++||||...... ..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~l~D~~G~~~~~~----------~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-----TSPTIGSNVEEIVYK---NIRFLMWDIGGQESLRS----------SW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEEC---CeEEEEEECCCCHHHHH----------HH
Confidence 4689999999999999999998654321 123344433322221 23689999999742111 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|+++..+
T Consensus 77 ~~~~~~~d~vi~V~D~s~ 94 (174)
T cd04153 77 NTYYTNTDAVILVIDSTD 94 (174)
T ss_pred HHHhhcCCEEEEEEECCC
Confidence 123455667777777543
No 347
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.58 E-value=0.00011 Score=69.31 Aligned_cols=55 Identities=31% Similarity=0.315 Sum_probs=35.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
++.++|.+|||||||+|+|+..... +...+|+.+........+. .+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-------cccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 6889999999999999999864422 1333444332222112222 47889999964
No 348
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.58 E-value=0.00014 Score=68.51 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=34.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEE--EEEeeE-eCCceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI--LRIGGI-LPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~--~~~~~~-l~~~~~liDTPGi~ 461 (666)
+|.++|.+|||||||+|+|++..... ...|..+.+. ..+... ..-.+.++||||..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 68999999999999999999765321 1222222221 111100 01256899999973
No 349
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.57 E-value=7.5e-05 Score=87.52 Aligned_cols=102 Identities=23% Similarity=0.219 Sum_probs=60.5
Q ss_pred hHHHHHHhh-cCCCccEEEEeecCCChhhHHHhhhccccceeec-c----cccCCCCceeEEEEE---------------
Q 005972 386 NLLAFIKEL-AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSK-L----TEAPIPGTTLGILRI--------------- 444 (666)
Q Consensus 386 eLl~~I~~~-l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~-~----t~S~~PGTT~~~~~~--------------- 444 (666)
++..+|... .++..+|+++|.+|+|||||+|+|+...+..... + ..+..+|+||+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~ 90 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGI 90 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCc
Confidence 344555432 2344679999999999999999999766543211 0 012345555443332
Q ss_pred -------eeEe-CCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 445 -------GGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 445 -------~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
.... +.++.++||||... + ...+.......+...++++....+
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~-------f---~~~~~~~~~~aD~~llVvda~~g~ 141 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQ-------Y---TRNMVTGASTADLAIILVDARKGV 141 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHH-------H---HHHHHHHHHhCCEEEEEEECCCCc
Confidence 1111 23678999999531 1 112333456778888888876554
No 350
>PLN03127 Elongation factor Tu; Provisional
Probab=97.56 E-value=9.3e-05 Score=83.28 Aligned_cols=119 Identities=19% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhcccc------ce----eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEG------VK----VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~------~~----~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
+..+|.++|.+|+|||||+++|.+... .. .........+|+|++........+ .++.++||||... .
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--f 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--Y 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--h
Confidence 346899999999999999999974210 00 111112345899999876653332 3679999999852 1
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
-..+..-....+...+.+++...+.......+..+.....+.+ +.+.||++.
T Consensus 138 --------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~i--IvviNKiDl 189 (447)
T PLN03127 138 --------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL--VVFLNKVDV 189 (447)
T ss_pred --------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeE--EEEEEeecc
Confidence 1122333445788899999876655444444445444333421 234577775
No 351
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.55 E-value=0.00013 Score=68.79 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=48.1
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|+++|.+|||||||+|+|.+...... ...+..|++...... -+..+.++||||....... ...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~~---~~~~~~l~Dt~G~~~~~~~----------~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFEK---GNLSFTAFDMSGQGKYRGL----------WEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEEE---CCEEEEEEECCCCHhhHHH----------HHH
Confidence 478999999999999999997532111 112334544332221 1235789999997532211 112
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...|+++...
T Consensus 65 ~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 65 YYKNIQGIIFVIDSSD 80 (162)
T ss_pred HHccCCEEEEEEeCCc
Confidence 3456677788877654
No 352
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.55 E-value=0.00015 Score=69.77 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=46.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.++++||.+|||||||+|+++........ +...|.+.....+. .+ ..+.++||||-.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~---------- 68 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMIT--IDGKQIKLQIWDTAGQESFRS---------- 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEE--ECCEEEEEEEEECCCcHHHHH----------
Confidence 37899999999999999999865422111 12234333322221 22 2568999999432111
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...++++...
T Consensus 69 ~~~~~~~~~d~il~v~d~~~ 88 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITR 88 (168)
T ss_pred HHHHHhccCCEEEEEEECCC
Confidence 11123355666777777554
No 353
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.55 E-value=0.00017 Score=68.04 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=46.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..... ..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR----------SI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH----------HH
Confidence 68999999999999999998654211 1223323222111111222 46799999942111 11
Q ss_pred HHHhhhhcCceeEEecCCCc
Q 005972 477 MVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++..+.
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~ 85 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNR 85 (164)
T ss_pred HHHHhCCCCEEEEEEECCCH
Confidence 12234556667777766543
No 354
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.54 E-value=0.00051 Score=68.71 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------------
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS------------------- 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk------------------- 347 (666)
...++|++++|.|+.+... + ..+...+...++.. . ...|++||.||+||...
T Consensus 84 ~~~~ad~iilv~d~t~~~S-f-~~~~~~w~~~i~~~------~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNS-L-RNVKTMWYPEIRHF------C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred cCCCCCEEEEEEECCChhH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 4678999999999988532 1 11212222333321 1 34689999999999631
Q ss_pred -CCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 348 -QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 348 -~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.......+.| ++..|. ..+-+||++|.|++++.+.+.+
T Consensus 155 ~~V~~~e~~~~----a~~~~~----~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 155 DILPPETGRAV----AKELGI----PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CccCHHHHHHH----HHHhCC----EEEEcCCCCCCCHHHHHHHHHH
Confidence 2222233333 345563 3788999999999999988764
No 355
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.54 E-value=0.00016 Score=68.85 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=45.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+++++|.+|||||||+|+++...... ...|.++.+.......+++ .+.++||||...... .
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~ 67 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTE------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------I 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH----------H
Confidence 68999999999999999998643211 2334333332211111222 468999999432211 1
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++..+
T Consensus 68 ~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred HHHHhCcCCEEEEEEECcC
Confidence 1123345566666666543
No 356
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.54 E-value=0.00011 Score=73.40 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=36.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|++++..... ...|.++.+.......+++ .+.|+||||...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc------ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 68999999999999999998754221 1344444343221112233 357999999854
No 357
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.54 E-value=0.00016 Score=68.26 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=47.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~-l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+++++|.+|||||||+|+|+...... ...+.+|++.....+... ..-.+.++||||....... ..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP----DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL----------TS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh----------hH
Confidence 68999999999999999998654321 123455555443333210 0124689999995322111 11
Q ss_pred HhhhhcCceeEEecCCC
Q 005972 479 EIRKELQPRTYRVKARQ 495 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~ 495 (666)
...+..+...+.++..+
T Consensus 68 ~~~~~~d~~i~v~d~~~ 84 (161)
T cd01863 68 SYYRGAQGVILVYDVTR 84 (161)
T ss_pred HHhCCCCEEEEEEECCC
Confidence 22345566666666554
No 358
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.53 E-value=0.00012 Score=69.04 Aligned_cols=56 Identities=25% Similarity=0.213 Sum_probs=35.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+++...... ..+.|+.+.......++. .+.++||||...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFVE-------KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-------ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999998643221 233344332222111222 356799999753
No 359
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.53 E-value=0.00014 Score=69.09 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=36.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+++..... ...+.|+.+.......++. ...++||||...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFV-------EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-------cccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence 6899999999999999999854321 2344455443322222332 346899999753
No 360
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.52 E-value=0.00053 Score=76.46 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=54.6
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCc
Q 005972 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKL 370 (666)
Q Consensus 291 aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~ 370 (666)
-..|+|++|...-=|..+.. --.|+.-++-.. .++|+|+|+||+|++..+.....-++.++.+....++
T Consensus 248 raaVLYfmDLSe~CGySva~-QvkLfhsIKpLF-------aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v--- 316 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAA-QVKLYHSIKPLF-------ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV--- 316 (620)
T ss_pred hhhheeeeechhhhCCCHHH-HHHHHHHhHHHh-------cCCceEEEeecccccCccccCHHHHHHHHHHHhccCc---
Confidence 45789999998755543322 223344444332 3578999999999997765433334444444433333
Q ss_pred ceEEEEecccCcChhhHHH
Q 005972 371 NGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 371 ~~V~~VSAkkg~GveeLl~ 389 (666)
.|+-.|..+..|+-.+..
T Consensus 317 -~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 317 -KVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred -eEEEecccchhceeeHHH
Confidence 388899999999866443
No 361
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.52 E-value=0.00018 Score=68.02 Aligned_cols=55 Identities=31% Similarity=0.359 Sum_probs=34.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-----CceEEEECCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-----AKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-----~~~~liDTPGi 460 (666)
+|+++|.+|||||||+|+|+...... ...|..+.+.......++ -.+.++||||.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 68999999999999999998653211 122333333322222222 24789999994
No 362
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.51 E-value=0.00015 Score=68.45 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+++++|.+|||||||+|++++..... .....|.+...+.+. ...+.++||||...... ....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~----------~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-----TIPTIGFNVETVEYK---NVSFTVWDVGGQDKIRP----------LWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCcCcceEEEEEC---CEEEEEEECCCChhhHH----------HHHH
Confidence 47899999999999999999765211 123344444433332 23689999999653211 1112
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...++++..+
T Consensus 63 ~~~~~~~~i~v~D~~~ 78 (158)
T cd00878 63 YYENTNGIIFVVDSSD 78 (158)
T ss_pred HhccCCEEEEEEECCC
Confidence 3355566777776654
No 363
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.49 E-value=0.00019 Score=67.78 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=35.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~-l~~~~~liDTPGi 460 (666)
.+++++|.+|||||||+|+|++..... ...+.+|.+.....+... ..-.+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE----NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 368999999999999999999765322 112334433222222210 0124679999994
No 364
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.48 E-value=0.0016 Score=73.33 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=56.7
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCc------HHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFP------KRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKV 342 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p------~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKi 342 (666)
|++ +|.+.|.. ++..+|.+++|||+.+ |.+. ....+.+ ..+... +.+++|+++||+
T Consensus 93 PGh~df~~~~~~------g~~~aD~aIlVVda~~--G~~e~g~~~~~qT~eh~-~~~~~~--------gi~~iIV~vNKm 155 (447)
T PLN00043 93 PGHRDFIKNMIT------GTSQADCAVLIIDSTT--GGFEAGISKDGQTREHA-LLAFTL--------GVKQMICCCNKM 155 (447)
T ss_pred CCHHHHHHHHHh------hhhhccEEEEEEEccc--CceecccCCCchHHHHH-HHHHHc--------CCCcEEEEEEcc
Confidence 765 45555443 4567999999999987 4321 1112221 112221 345688899999
Q ss_pred CCCCCCCChHHH---HHHHHHHHHhCCCCC-cceEEEEecccCcChhh
Q 005972 343 DLLPSQVSPTRL---DRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRN 386 (666)
Q Consensus 343 DLLpk~~~~~~L---~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gvee 386 (666)
|+.+......++ ..-++.+.+..|+.. -..++++||.+|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 987332222222 222334445566421 12489999999999853
No 365
>PRK12735 elongation factor Tu; Reviewed
Probab=97.48 E-value=0.00011 Score=81.51 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=68.5
Q ss_pred CCccEEEEeecCCChhhHHHhhhcccc------c----eeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEG------V----KVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~------~----~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
+..+++++|.+|+|||||+|+|++... . ...........|+|.+........+ .++.++||||...
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~--- 87 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD--- 87 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH---
Confidence 456899999999999999999986211 0 0111122236899998765543222 3679999999731
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
+ ...+.......+...+.++............+..+.....+.+ +.+.||++.
T Consensus 88 ----f---~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~i--ivvvNK~Dl 140 (396)
T PRK12735 88 ----Y---VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI--VVFLNKCDM 140 (396)
T ss_pred ----H---HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeE--EEEEEecCC
Confidence 1 1122333456678888888766543322222233332223322 234567775
No 366
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0011 Score=72.79 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=60.9
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCC-----CCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDG-----MFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~g-----s~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
|++ +|.+.|.. ....+|+.|+|||+++... ...+ ..+.+ .|.+.. +...+|+++||+|
T Consensus 93 PGHrdFvknmIt------GasqAD~aVLVV~a~~~efE~g~~~~gQ-trEH~--~La~tl-------Gi~~lIVavNKMD 156 (428)
T COG5256 93 PGHRDFVKNMIT------GASQADVAVLVVDARDGEFEAGFGVGGQ-TREHA--FLARTL-------GIKQLIVAVNKMD 156 (428)
T ss_pred CchHHHHHHhhc------chhhccEEEEEEECCCCccccccccCCc-hhHHH--HHHHhc-------CCceEEEEEEccc
Confidence 664 45554433 4567999999999998620 1111 11221 232321 3457999999999
Q ss_pred CCCCCCC-hHHHHHHHHHHHHhCCCCC-cceEEEEecccCcChhhH
Q 005972 344 LLPSQVS-PTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 344 LLpk~~~-~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~GveeL 387 (666)
+.+.++. .+.+..-+..+.+..|+.. -...++|||.+|.|+.+.
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9985431 1223333344556777641 124789999999997653
No 367
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.48 E-value=0.00019 Score=76.12 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=34.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec-c---cccCCCCceeEEEEEeeE---eCCceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK-L---TEAPIPGTTLGILRIGGI---LPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~-~---t~S~~PGTT~~~~~~~~~---l~~~~~liDTPGi~~~ 463 (666)
.+++|||.+|+|||||||+|++........ . ..+..+.++......... ..-+..++||||+...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 378999999999999999999875443310 0 001111112221111111 1125789999999754
No 368
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.47 E-value=0.00024 Score=66.61 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=45.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+++++|.+|||||||+|+|+...... ...+.++.........+.. .+.++||||-..... +
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~------ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----L------ 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----h------
Confidence 68999999999999999999654321 1222232222221111222 468999999432211 0
Q ss_pred HHHhhhhcCceeEEecCCCc
Q 005972 477 MVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++..+.
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~ 85 (162)
T cd04123 66 GPIYYRDADGAILVYDITDA 85 (162)
T ss_pred hHHHhccCCEEEEEEECCCH
Confidence 11223456666776665443
No 369
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.47 E-value=0.0002 Score=69.07 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=47.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+++++|.+|||||||+|+|++.... ...+..|.....+.+. ...+.++||||...... ..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~~~~~~~~~---~~~l~l~D~~G~~~~~~----------~~ 75 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGFQIKTLEYE---GYKLNIWDVGGQKTLRP----------YW 75 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCccccceEEEEEC---CEEEEEEECCCCHHHHH----------HH
Confidence 357999999999999999999875321 1123334333222222 22568999999642111 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|.++...
T Consensus 76 ~~~~~~~d~~i~v~d~~~ 93 (173)
T cd04154 76 RNYFESTDALIWVVDSSD 93 (173)
T ss_pred HHHhCCCCEEEEEEECCC
Confidence 122345566667666544
No 370
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.46 E-value=0.00024 Score=67.24 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=33.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+|+....... .+...|+......+ .++. .+.++||||..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED----SQHTIGVEFGSKII--RVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeeEEEEEE--EECCEEEEEEEEECcchH
Confidence 689999999999999999986542211 11222221111111 1222 46799999963
No 371
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.45 E-value=0.00035 Score=74.31 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=53.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
.+.+|++++|+|+.+|.... -...++.-|+..+..+. .+....|=|=||+|..+.... . +..
T Consensus 255 VaeadlllHvvDiShP~ae~---q~e~Vl~vL~~igv~~~--pkl~~mieVdnkiD~e~~~~e-----~------E~n-- 316 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEE---QRETVLHVLNQIGVPSE--PKLQNMIEVDNKIDYEEDEVE-----E------EKN-- 316 (410)
T ss_pred HhhcceEEEEeecCCccHHH---HHHHHHHHHHhcCCCcH--HHHhHHHhhccccccccccCc-----c------ccC--
Confidence 46899999999999976322 22334444554332100 011134557888888654321 0 111
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
..+.+||++|.|+++|++.+...
T Consensus 317 ----~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 317 ----LDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred ----CccccccccCccHHHHHHHHHHH
Confidence 16789999999999999998764
No 372
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.44 E-value=0.00019 Score=66.57 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=35.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
.|.++|.+|||||||+|+|.+..... ...|.+..+...+.. -...+.++||||..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~------~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 55 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSE------DTIPTVGFNMRKVTK-GNVTLKVWDLGGQP 55 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCc------CccCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 37899999999999999998764321 123433333332221 11257899999963
No 373
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.44 E-value=0.00027 Score=67.30 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=20.9
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 374
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.44 E-value=0.00027 Score=67.38 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+++|....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~ 27 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGT 27 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 479999999999999999998643
No 375
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.43 E-value=0.00019 Score=69.49 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=34.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+++...... ..+.|+.+.......++. .+.++||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE-------SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc-------ccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 378999999999999999999654221 122233221111111221 35799999965
No 376
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.43 E-value=0.0002 Score=67.00 Aligned_cols=79 Identities=19% Similarity=0.070 Sum_probs=46.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+|.++|.+|||||||+|+|++.... ...+.||.+........+ -.+.++||||...... .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-------EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA----------M 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-------cCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH----------H
Confidence 4789999999999999999865421 233444444333222222 2467899999654211 1
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++..+
T Consensus 64 ~~~~~~~~~~~i~v~d~~~ 82 (160)
T cd00876 64 RDLYIRQGDGFILVYSITD 82 (160)
T ss_pred HHHHHhcCCEEEEEEECCC
Confidence 1123445566666665543
No 377
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.42 E-value=0.00022 Score=67.30 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=47.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|+++|.+|||||||+|+|....... ..+..|.+...+... -...+.++||||...... ....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-----~~~t~~~~~~~~~~~--~~~~l~i~D~~G~~~~~~----------~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-----TIPTVGFNVEMLQLE--KHLSLTVWDVGGQEKMRT----------VWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-----ccCccCcceEEEEeC--CceEEEEEECCCCHhHHH----------HHHH
Confidence 47899999999999999999765321 123334333332221 112578999999742111 1112
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...|+++...
T Consensus 64 ~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 64 YLENTDGLVYVVDSSD 79 (160)
T ss_pred HhccCCEEEEEEECCc
Confidence 3455666777777654
No 378
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.40 E-value=0.00035 Score=68.29 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=36.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
....+++++|.+|||||||+|+|.+...... .+..|.+...+.+. +..+.++||||..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~~---~~~~~l~D~~G~~ 74 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTIG---NIKFKTFDLGGHE 74 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEEC---CEEEEEEECCCCH
Confidence 3457899999999999999999986542211 11222232222221 2357899999953
No 379
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.40 E-value=0.00024 Score=72.70 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
++..|+++|.+|+|||||+|+|++.... .+.+...|+. .+.. . ....+.++||||.. ..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~----~~~~~~~g~i-~i~~-~--~~~~i~~vDtPg~~-------------~~ 96 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTK----QNISDIKGPI-TVVT-G--KKRRLTFIECPNDI-------------NA 96 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccc----CccccccccE-EEEe-c--CCceEEEEeCCchH-------------HH
Confidence 3457899999999999999999865321 1233456641 1111 1 24578999999843 12
Q ss_pred HHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
+....+..+...+.++....+...+...+..++....+.++ .+.|+++.
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi--~VvnK~D~ 145 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVM--GVLTHLDL 145 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEE--EEEecccc
Confidence 33445778888999988766655554445555443334222 24566664
No 380
>PRK00049 elongation factor Tu; Reviewed
Probab=97.36 E-value=0.00017 Score=79.83 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccc---e-------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGV---K-------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~---~-------~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
+..++.++|.+|+|||||+++|+..... . .........+|+|++........ +.++.++||||... .
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~--f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD--Y 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH--H
Confidence 3468999999999999999999863110 0 00011123689999976554322 23678999999741 1
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
...+.......+...+.+++...+.......+.++.....+.+ +.+.||++.
T Consensus 89 --------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~i--iVvvNK~D~ 140 (396)
T PRK00049 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI--VVFLNKCDM 140 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEE--EEEEeecCC
Confidence 1122233466788888888876554443333344443333432 224577775
No 381
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.35 E-value=0.00035 Score=66.91 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+|++....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~ 27 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDS 27 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCc
Confidence 479999999999999999998654
No 382
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.35 E-value=0.00026 Score=69.79 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=34.3
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|+...... ..+.|+.+.......+++ .+.++||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE-------TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-------cCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999998543211 233343322211112332 36789999953
No 383
>PLN03118 Rab family protein; Provisional
Probab=97.34 E-value=0.00033 Score=70.29 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=47.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+++++|.+|||||||+|+|+...... .++..|++.....+. ++. .+.|+||||......+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~~~~~~--------- 78 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-----LAPTIGVDFKIKQLT--VGGKRLKLTIWDTAGQERFRTL--------- 78 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-----cCCCceeEEEEEEEE--ECCEEEEEEEEECCCchhhHHH---------
Confidence 589999999999999999998754211 123334333332222 222 4689999996533221
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...++++...
T Consensus 79 -~~~~~~~~d~~vlv~D~~~ 97 (211)
T PLN03118 79 -TSSYYRNAQGIILVYDVTR 97 (211)
T ss_pred -HHHHHhcCCEEEEEEECCC
Confidence 1122344555666665543
No 384
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.33 E-value=0.00074 Score=65.09 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=45.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeE--EEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLG--ILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~--~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
+|.++|.+|||||||+|+|...... . +.+|.+ ...+.. -+-.+.++||||...... ..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-------~--~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~----------~~ 60 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-------Q--PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLRP----------LW 60 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-------C--cCCcCceeEEEEEE-CCEEEEEEECCCChhcch----------HH
Confidence 4789999999999999999865211 1 222332 211211 123578999999753221 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|+++..+
T Consensus 61 ~~~~~~ad~ii~V~D~s~ 78 (169)
T cd04158 61 KHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred HHHhccCCEEEEEEeCCc
Confidence 223455677788777644
No 385
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.33 E-value=0.00037 Score=68.69 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.7
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+|+++...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~ 24 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA 24 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 386
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.32 E-value=0.002 Score=67.84 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=32.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
++..+|.+++|+|+.+. ... ..+.++..+.. .+.|+++++||+|+....
T Consensus 91 ~l~~aD~~IlVvda~~g--~~~--~~~~i~~~~~~---------~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 91 TLTAVDSAVMVIDAAKG--VEP--QTRKLFEVCRL---------RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHCCEEEEEEECCCC--ccH--HHHHHHHHHHh---------cCCCEEEEEECCccCCCC
Confidence 45568999999999863 221 12334443332 345899999999986543
No 387
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.32 E-value=0.00022 Score=84.52 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-----CCceEEEECCCCCCCCcccccCC
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-----PAKAKLYDTPGLLHPHLMSMRLN 471 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-----~~~~~liDTPGi~~~~~~~~~L~ 471 (666)
....|.++|.+|+|||||+++|+...... +..+|+|.+...+...+ ...+.++||||.....
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~------- 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS------- 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc------ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH-------
Confidence 34589999999999999999998654321 34567776533222112 1367999999963211
Q ss_pred hhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccc
Q 005972 472 RDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHL 529 (666)
Q Consensus 472 ~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~ 529 (666)
..........+...++++...+....-...+..++....++ +.+.|+++...
T Consensus 310 ---~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPi---IVViNKiDl~~ 361 (742)
T CHL00189 310 ---SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPI---IVAINKIDKAN 361 (742)
T ss_pred ---HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceE---EEEEECCCccc
Confidence 01112345567777888765544332222223333333343 34567777643
No 388
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.32 E-value=0.00047 Score=65.96 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++++|.+|||||||+|+++...
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~ 29 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNK 29 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998643
No 389
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.32 E-value=0.00047 Score=65.89 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=21.0
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++++|.+|||||||+|+|.+..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 390
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.30 E-value=0.00038 Score=66.76 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=34.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+|++.+..... ....|+.+.......++. .+.++||||...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIE-------SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-------ccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence 68999999999999999998654221 122233222111111222 457999999654
No 391
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.30 E-value=0.00026 Score=67.52 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=45.1
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+|+++|.+|||||||+++++...-. ...+.|+.........++. .+.++||||....... .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~-- 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-------GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE-------Q-- 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-------cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc-------h--
Confidence 4789999999999999999854321 1233333222111112232 3679999998752110 0
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++..+
T Consensus 65 ~~~~~~~~d~~i~v~d~~~ 83 (165)
T cd04146 65 LERSIRWADGFVLVYSITD 83 (165)
T ss_pred HHHHHHhCCEEEEEEECCC
Confidence 1122345566666666544
No 392
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.30 E-value=0.00038 Score=67.12 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=47.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+++++|.+|||||||+|+|.+..... ..+..|.++..+.+. +..+.++||||-..... ....
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~g~~~~~~~~~---~~~~~i~D~~G~~~~~~----------~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKK-----VAPTVGFTPTKLRLD---KYEVCIFDLGGGANFRG----------IWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcc-----ccCcccceEEEEEEC---CEEEEEEECCCcHHHHH----------HHHH
Confidence 47899999999999999998652111 123345443333221 23578999999532111 1123
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...|.++...
T Consensus 63 ~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 63 YYAEAHGLVFVVDSSD 78 (167)
T ss_pred HHcCCCEEEEEEECCc
Confidence 4456677788877654
No 393
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.29 E-value=0.00091 Score=76.85 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=42.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|.+|+|+|+.+ +... ..+.++..++. .+.|+++++||+|+..... ..+.. .+...++
T Consensus 100 ~l~~aD~aIlVvDa~~--gv~~--~t~~l~~~~~~---------~~~PiivviNKiD~~~~~~--~~ll~---~i~~~l~ 161 (527)
T TIGR00503 100 TLTAVDNCLMVIDAAK--GVET--RTRKLMEVTRL---------RDTPIFTFMNKLDRDIRDP--LELLD---EVENELK 161 (527)
T ss_pred HHHhCCEEEEEEECCC--CCCH--HHHHHHHHHHh---------cCCCEEEEEECccccCCCH--HHHHH---HHHHHhC
Confidence 5567999999999987 3222 22344444332 3468999999999864331 22222 2223344
Q ss_pred CCCcceEEEE
Q 005972 367 APKLNGVYLV 376 (666)
Q Consensus 367 ~~~~~~V~~V 376 (666)
...+..++++
T Consensus 162 ~~~~~~~~PI 171 (527)
T TIGR00503 162 INCAPITWPI 171 (527)
T ss_pred CCCccEEEEe
Confidence 3335557777
No 394
>COG2262 HflX GTPases [General function prediction only]
Probab=97.29 E-value=0.00026 Score=77.48 Aligned_cols=90 Identities=27% Similarity=0.127 Sum_probs=53.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
..|.+||++|+|||||+|+|++...... +..-+|++...-...++ ..+.+-||=||...-.. .|-+.-..
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~------d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~--~LV~AFks 264 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVA------DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH--PLVEAFKS 264 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeecc------ccccccccCceeEEEeCCCceEEEecCccCcccCCh--HHHHHHHH
Confidence 3689999999999999999997654322 33334444322111233 46889999999853211 11111122
Q ss_pred HHHhhhhcCceeEEecCCCc
Q 005972 477 MVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~ 496 (666)
.+.-..+.+.....++....
T Consensus 265 TLEE~~~aDlllhVVDaSdp 284 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDP 284 (411)
T ss_pred HHHHhhcCCEEEEEeecCCh
Confidence 23334556677777776654
No 395
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00096 Score=71.79 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=61.4
Q ss_pred Cchh-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |-+.|.. ...-||+.|++||++. |...+.=....+..|- +.+.+++++||+||+.-+
T Consensus 94 PGHeQYTRNMaT------GASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLL----------GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 94 PGHEQYTRNMAT------GASTADLAILLVDARK--GVLEQTRRHSFIASLL----------GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred CcHHHHhhhhhc------ccccccEEEEEEecch--hhHHHhHHHHHHHHHh----------CCcEEEEEEeeecccccC
Confidence 7763 5666653 5677999999999988 5433221111112121 345799999999999754
Q ss_pred CC-hHHH-HHHHHHHHHhCCCCCcceEEEEecccCcChhh
Q 005972 349 VS-PTRL-DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRN 386 (666)
Q Consensus 349 ~~-~~~L-~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gvee 386 (666)
+. -+.+ ..| ..+++++|.. ....+|+||..|.|+-.
T Consensus 156 e~~F~~I~~dy-~~fa~~L~~~-~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADY-LAFAAQLGLK-DVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHH-HHHHHHcCCC-cceEEechhccCCcccc
Confidence 31 1222 222 2345678875 45789999999998743
No 396
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.27 E-value=0.00056 Score=65.57 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=34.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+|+++...... ....|+.+.......++. .+.++||||-..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPE-------EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-------CCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 68999999999999999998654221 112233332221111232 357899999654
No 397
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.27 E-value=0.0022 Score=71.10 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=87.4
Q ss_pred chHHHH-HHHhhhhhhHHHHHHHHHHHhh------hcCCceeecccccceecceecccccccccCch-hHHHHHHHHhcC
Q 005972 213 ITEELV-ERSKKKKLSKAERKKKAREAQK------EKGEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDRVIATRLMK 284 (666)
Q Consensus 213 vg~slL-n~l~~~K~si~~rk~~a~~a~~------~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~-d~~~~L~~~l~~ 284 (666)
-||||| ..|.++.-...++.+-+..+|. ++++ ++...|+.....+...+ .+..|++ +|.....+
T Consensus 16 HGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGI-TILaKnTav~~~~~~IN---IvDTPGHADFGGEVER---- 87 (603)
T COG1217 16 HGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGI-TILAKNTAVNYNGTRIN---IVDTPGHADFGGEVER---- 87 (603)
T ss_pred CCcchHHHHHHhhccccccccchhhhhcCccchhhhcCc-EEEeccceeecCCeEEE---EecCCCcCCccchhhh----
Confidence 467777 8888886555555444322322 2333 34455665543332211 0123655 56554433
Q ss_pred cccccccCEEEEEEecCCCCCCCcHHHHHHHH-HHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHH
Q 005972 285 PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLF-KKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 285 P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~-~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k 363 (666)
.+..+|-|++||||.+ |..|+. ++++ ++|.. +.+| |+|+||+|.-...- ..+-.-+-.++-
T Consensus 88 --vl~MVDgvlLlVDA~E--GpMPQT--rFVlkKAl~~---------gL~P-IVVvNKiDrp~Arp--~~Vvd~vfDLf~ 149 (603)
T COG1217 88 --VLSMVDGVLLLVDASE--GPMPQT--RFVLKKALAL---------GLKP-IVVINKIDRPDARP--DEVVDEVFDLFV 149 (603)
T ss_pred --hhhhcceEEEEEEccc--CCCCch--hhhHHHHHHc---------CCCc-EEEEeCCCCCCCCH--HHHHHHHHHHHH
Confidence 4567999999999988 667754 3332 23322 4455 89999999864321 111111112222
Q ss_pred -------hCCCCCcceEEEEecccCcC----------hhhHHHHHHhhcCC
Q 005972 364 -------AGGAPKLNGVYLVSARKDLG----------VRNLLAFIKELAGP 397 (666)
Q Consensus 364 -------~~g~~~~~~V~~VSAkkg~G----------veeLl~~I~~~l~~ 397 (666)
++++| |++.||..|+- +..|++.|.++.|.
T Consensus 150 ~L~A~deQLdFP----ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 150 ELGATDEQLDFP----IVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HhCCChhhCCCc----EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 34444 88889988753 66788998888764
No 398
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.27 E-value=0.00041 Score=80.61 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=55.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
.|+++|.+|+|||||+|+|++.. ++.......+|+|.+.......++ ..+.++||||... + ...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~---~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~-------f---~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA---ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK-------F---ISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc---CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH-------H---HHHHH
Confidence 58899999999999999998643 111222346788988654332233 3578999999421 1 12234
Q ss_pred HhhhhcCceeEEecCCCcc
Q 005972 479 EIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~~l 497 (666)
.....++...++++.....
T Consensus 69 ~g~~~aD~aILVVDa~~G~ 87 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGV 87 (581)
T ss_pred hhhccCCEEEEEEECCCCC
Confidence 4456678888888876543
No 399
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.27 E-value=0.00057 Score=65.07 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=45.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+++++|.+|||||||+++|....... ...|.++.+.......+.+ .+.++||||......
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------- 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS---------- 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH----------
Confidence 479999999999999999998543211 1122223333221112222 357889999542111
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 72 ITQSYYRSANALILTYDITC 91 (169)
T ss_pred HHHHHhcCCCEEEEEEECcC
Confidence 11223455566667666553
No 400
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.26 E-value=0.0055 Score=75.21 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|++.-...+... ....+|++++|+|+.+ |..+.. ...+..+.. .+.|+++|+||+|+.+.+.
T Consensus 534 PGhe~F~~lr~~-----g~~~aDivlLVVDa~~--Gi~~qT--~e~I~~lk~---------~~iPiIVViNKiDL~~~~~ 595 (1049)
T PRK14845 534 PGHEAFTSLRKR-----GGSLADLAVLVVDINE--GFKPQT--IEAINILRQ---------YKTPFVVAANKIDLIPGWN 595 (1049)
T ss_pred CCcHHHHHHHHh-----hcccCCEEEEEEECcc--cCCHhH--HHHHHHHHH---------cCCCEEEEEECCCCccccc
Confidence 776433333322 4466999999999987 333322 122333333 2458999999999986432
Q ss_pred C--------------hHHHHHH-------HHHHHHhCCCC-----------CcceEEEEecccCcChhhHHHHHHhh
Q 005972 350 S--------------PTRLDRW-------VRHRAKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 ~--------------~~~L~~w-------l~~~~k~~g~~-----------~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ...+... +.++ .+.|+. ....+++|||++|.|+++|+..|..+
T Consensus 596 ~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L-~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 596 ISEDEPFLLNFNEQDQHALTELEIKLYELIGKL-YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH-HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0 0001111 1111 122221 13468999999999999999988643
No 401
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.26 E-value=0.00062 Score=64.72 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.0
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++++|.+|||||||+|+|++..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999999754
No 402
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.25 E-value=0.00036 Score=66.75 Aligned_cols=60 Identities=25% Similarity=0.210 Sum_probs=35.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.+|.++|.+|||||||+|++++..-.... .+..+.+++..+.... -.-.+.++||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~---~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY---IPTIEDTYRQVISCSK-NICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCc---CCcchheEEEEEEECC-EEEEEEEEECCCCCc
Confidence 36899999999999999999865422111 1122223332222211 112467999999754
No 403
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.25 E-value=0.00052 Score=81.97 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
....|.++|.+|+|||||+++|.+.... ....+|+|.+...+...++ ..+.|+||||......+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m--------- 353 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVA------AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAM--------- 353 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc------ccccCceeeeccEEEEEECCEEEEEEECCCCccchhH---------
Confidence 3458999999999999999999864322 2345777877544333332 46899999996432211
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHL 529 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~ 529 (666)
........+...+.++....+...-...+........++ +.+.|+++...
T Consensus 354 -~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPi---IVviNKiDl~~ 403 (787)
T PRK05306 354 -RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPI---IVAINKIDKPG 403 (787)
T ss_pred -HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcE---EEEEECccccc
Confidence 112334456677777665443322222222222233343 34567777643
No 404
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0014 Score=65.14 Aligned_cols=98 Identities=27% Similarity=0.291 Sum_probs=65.0
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-CCCChHHHHHHHHHHH
Q 005972 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRA 362 (666)
Q Consensus 284 ~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~ 362 (666)
.|+...+++.+|+|-|+.+.. |+ .-.+..++.|.+.. + .+.-+.||.||+||.. +.......+. ++
T Consensus 71 apMYyRgA~AAivvYDit~~~-SF--~~aK~WvkeL~~~~-----~-~~~vialvGNK~DL~~~R~V~~~ea~~----yA 137 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEE-SF--EKAKNWVKELQRQA-----S-PNIVIALVGNKADLLERREVEFEEAQA----YA 137 (200)
T ss_pred ccceecCCcEEEEEEecccHH-HH--HHHHHHHHHHHhhC-----C-CCeEEEEecchhhhhhcccccHHHHHH----HH
Confidence 355677899999999999854 22 11233344455421 1 2223556999999997 4443333333 44
Q ss_pred HhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
+..|.. .+-+||++|.|+++|...|.+.+|..
T Consensus 138 e~~gll----~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 138 ESQGLL----FFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HhcCCE----EEEEecccccCHHHHHHHHHHhccCc
Confidence 566653 77899999999999999999887754
No 405
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.23 E-value=0.00068 Score=64.71 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=44.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+|+++|.+|||||||+++++........ ....+.+ .......++. .+.++||||-......
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ----LSTYALT--LYKHNAKFEGKTILVDFWDTAGQERFQTM---------- 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc----CCceeeE--EEEEEEEECCEEEEEEEEeCCCchhhhhh----------
Confidence 6899999999999999999864322110 1111222 1111111222 4678999996432211
Q ss_pred HHHhhhhcCceeEEecCCCc
Q 005972 477 MVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...++++....
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~ 85 (161)
T cd04124 66 HASYYHKAHACILVFDVTRK 85 (161)
T ss_pred hHHHhCCCCEEEEEEECCCH
Confidence 11234555666777765543
No 406
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.23 E-value=0.0005 Score=65.18 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=45.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|+++|.+|||||||+|+|....... ..|.+..+...+.+ -+..+.++||||...... ....
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-------~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-------TIPTIGFNVETVTY-KNLKFQVWDLGGQTSIRP----------YWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-------cCCccCcCeEEEEE-CCEEEEEEECCCCHHHHH----------HHHH
Confidence 47899999999999999997543221 12211111212221 123678999999753221 1122
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...|+++...
T Consensus 63 ~~~~~~~ii~v~d~~~ 78 (158)
T cd04151 63 YYSNTDAIIYVVDSTD 78 (158)
T ss_pred HhcCCCEEEEEEECCC
Confidence 3455677777777644
No 407
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.21 E-value=0.0006 Score=78.34 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=73.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhcccccee--ec--------ccccC------CCCceeEEEEEeeEe-CCceEEEECCC
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKV--SK--------LTEAP------IPGTTLGILRIGGIL-PAKAKLYDTPG 459 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~--------~t~S~------~PGTT~~~~~~~~~l-~~~~~liDTPG 459 (666)
...+++++|.+|+|||||+++|+...+... +. .++++ ..|.|.........+ +..+.++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 356999999999999999999975433211 10 01111 123333322122112 33678999999
Q ss_pred CCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHH
Q 005972 460 LLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIW 539 (666)
Q Consensus 460 i~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~ 539 (666)
..... . .........+...++++...++...-...++..+....++ +.+.||++....+.+...+..
T Consensus 90 ~~df~-------~---~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pi---ivviNKiD~~~~~~~~ll~~i 156 (527)
T TIGR00503 90 HEDFS-------E---DTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPI---FTFMNKLDRDIRDPLELLDEV 156 (527)
T ss_pred hhhHH-------H---HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE---EEEEECccccCCCHHHHHHHH
Confidence 84211 1 1223446678888888876654322112222222223343 335688887544444454555
Q ss_pred HhhcCC
Q 005972 540 KNHVGI 545 (666)
Q Consensus 540 ~k~~g~ 545 (666)
+..++.
T Consensus 157 ~~~l~~ 162 (527)
T TIGR00503 157 ENELKI 162 (527)
T ss_pred HHHhCC
Confidence 555554
No 408
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.19 E-value=0.00057 Score=64.78 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=34.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+++++...... ..+.|+.+.......+++ .+.|+||||...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIE-------KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-------CCCCchhheEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999998643221 122232222211111222 367899999643
No 409
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.19 E-value=0.0014 Score=68.00 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=21.0
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++||.+++||||++|+|++..
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCC
Confidence 68999999999999999999763
No 410
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.18 E-value=0.0037 Score=60.76 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=77.9
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCc-hhHHHHHHHH
Q 005972 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPD-FDFDRVIATR 281 (666)
Q Consensus 204 ~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~-~d~~~~L~~~ 281 (666)
...++|-.|.|||++ +++.++-.+ ...++.|-+-+.+- |..++-. -..+++ -.+..+..+
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~~--------------~i~pt~gf~Iktl~-~~~~~L~--iwDvGGq~~lr~~W~n- 79 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDTD--------------TISPTLGFQIKTLE-YKGYTLN--IWDVGGQKTLRSYWKN- 79 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCcc--------------ccCCccceeeEEEE-ecceEEE--EEEcCCcchhHHHHHH-
Confidence 445689999998866 766665522 22344444443332 2111110 011233 233444444
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHH--HH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW--VR 359 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w--l~ 359 (666)
..+.+|.+|+|||..|. ....+- ...|.....+-... ..|++++.||.|+.+.- +.+.+..- +.
T Consensus 80 -----YfestdglIwvvDssD~-----~r~~e~-~~~L~~lL~eerla--G~~~Lvlank~dl~~~l-~~~~i~~~~~L~ 145 (185)
T KOG0073|consen 80 -----YFESTDGLIWVVDSSDR-----MRMQEC-KQELTELLVEERLA--GAPLLVLANKQDLPGAL-SLEEISKALDLE 145 (185)
T ss_pred -----hhhccCeEEEEEECchH-----HHHHHH-HHHHHHHHhhhhhc--CCceEEEEecCcCcccc-CHHHHHHhhCHH
Confidence 34568999999999873 222221 22333332222333 25789999999997432 22222221 11
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHH
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFI 391 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I 391 (666)
.+.+.... .++-+||.+|.++.+=++.|
T Consensus 146 ~l~ks~~~----~l~~cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 146 ELAKSHHW----RLVKCSAVTGEDLLEGIDWL 173 (185)
T ss_pred HhccccCc----eEEEEeccccccHHHHHHHH
Confidence 22222222 38889999996654444333
No 411
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.17 E-value=0.00078 Score=67.92 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=46.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC----ceEEEECCCCCCCCcccccCChhhH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA----KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~----~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
+|.++|.+|||||||+|+|++..... ...|-++.+.......++. .+.|+||||-..+..+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~------~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l--------- 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK------SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM--------- 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH---------
Confidence 58999999999999999998653211 1233333343222222322 4679999995332211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...++++...
T Consensus 67 -~~~~~~~ad~iilV~D~t~ 85 (215)
T cd04109 67 -LDKYIYGAHAVFLVYDVTN 85 (215)
T ss_pred -HHHHhhcCCEEEEEEECCC
Confidence 1123455666677766543
No 412
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.17 E-value=9.9e-05 Score=72.79 Aligned_cols=117 Identities=22% Similarity=0.219 Sum_probs=73.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceee------------cccccCCCCceeEEEEEeeE---eCCceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS------------KLTEAPIPGTTLGILRIGGI---LPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~------------~~t~S~~PGTT~~~~~~~~~---l~~~~~liDTPGi~~~ 463 (666)
.+|+++|..++|||||+++|+...+.... ........|.|.+....... -...+.++||||...
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 47899999999999999999976532110 01112234555554333322 234789999999632
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
+ ...+....+..+...+.+++..++.......+..+.....++ +.+.||++..
T Consensus 83 ------f---~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~---ivvlNK~D~~ 135 (188)
T PF00009_consen 83 ------F---IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPI---IVVLNKMDLI 135 (188)
T ss_dssp ------H---HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SE---EEEEETCTSS
T ss_pred ------e---eecccceecccccceeeeecccccccccccccccccccccce---EEeeeeccch
Confidence 1 122344567788899999998877666655666665555554 3456777764
No 413
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.17 E-value=0.00068 Score=65.62 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=49.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|.++|.+|||||||+++|...... ...|.++.+...+.. -.-.+.++||||...... ..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-------~~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~~~----------~~ 70 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-------TTIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRP----------LW 70 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-------cccCCcccceEEEEE-CCEEEEEEECCCCHHHHH----------HH
Confidence 358999999999999999999754321 112332222222221 123578999999753211 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|+++..+
T Consensus 71 ~~~~~~a~~ii~v~D~t~ 88 (168)
T cd04149 71 RHYYTGTQGLIFVVDSAD 88 (168)
T ss_pred HHHhccCCEEEEEEeCCc
Confidence 234566777888888665
No 414
>PRK13351 elongation factor G; Reviewed
Probab=97.16 E-value=0.0004 Score=82.25 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=75.2
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--ecc----ccc------CCCCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SKL----TEA------PIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~~----t~S------~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
.+|+++|..|+|||||+++|+...+... +.+ +.. ...|.|.........+ ...+.++||||......
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~ 88 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTG 88 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHH
Confidence 4899999999999999999986433210 000 001 1234454432222222 33689999999853211
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
......+..+...+.++............+..+.....+++ .+.|+++.......+.-+-++..++.
T Consensus 89 ----------~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i---iviNK~D~~~~~~~~~~~~i~~~l~~ 155 (687)
T PRK13351 89 ----------EVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL---IFINKMDRVGADLFKVLEDIEERFGK 155 (687)
T ss_pred ----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE---EEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 12334566777888888766544333322333333334442 35688887665555555555555554
No 415
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.16 E-value=0.00046 Score=66.17 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=34.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+|+........ ....+.+|.... +.. ..-.+.++||||..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENV---PRVLPEITIPAD-VTP-ERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccC---CCcccceEeeee-ecC-CeEEEEEEeCCCch
Confidence 6899999999999999999875432110 011222332221 110 11256899999975
No 416
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.14 E-value=0.00031 Score=77.71 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=68.2
Q ss_pred CccEEEEeecCCChhhHHHhhhcccc------ce----eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEG------VK----VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~------~~----~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~ 466 (666)
..++.++|..++|||||+++|++... .. ..........|+|++...+....+ .++.++||||.....
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~-- 89 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV-- 89 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH--
Confidence 46899999999999999999984310 00 011111234899999866553222 257899999974211
Q ss_pred cccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 467 SMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 467 ~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
..+..-...++...+.++....+.......+..+.....+.+ +.+.||++.
T Consensus 90 --------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~i--IvvvNK~Dl 140 (394)
T TIGR00485 90 --------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYI--VVFLNKCDM 140 (394)
T ss_pred --------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE--EEEEEeccc
Confidence 122333455677788888766543333333333333233322 234577775
No 417
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.13 E-value=0.00046 Score=65.41 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.0
Q ss_pred cEEEEeecCCChhhHHHhhhcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+++++|.+|||||||+++|...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 418
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.12 E-value=0.00097 Score=64.15 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=46.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|.++|.+|||||||+++++....... ..|..+.+.......++. .+.++||||...... .
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~ 67 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPER------TEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK---------S 67 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc------cccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---------h
Confidence 4789999999999999999986432111 112212221111111222 568999999532110 0
Q ss_pred HHHHhhhhcCceeEEecCCCccccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVG 500 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lg 500 (666)
......+..+...+.++....-.+.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~ 92 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFH 92 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHH
Confidence 0112235556667766665443333
No 419
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.12 E-value=0.00084 Score=64.82 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=21.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++++|.+|||||||+|++....
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998643
No 420
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.12 E-value=0.00082 Score=67.82 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=35.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|+....... ..|.++.+.......+ ++ .+.++||||-.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC------CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 4799999999999999999997543221 2233333432211112 11 46799999953
No 421
>PRK12736 elongation factor Tu; Reviewed
Probab=97.11 E-value=0.0005 Score=76.16 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccce----------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~----------~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
+..++.++|.+++|||||+++|++..... ..........|+|++........ +..+.++||||.. ..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--DY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--HH
Confidence 45689999999999999999998632110 01111123689999986554322 2367899999943 11
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
...+..-....+...+.++....+.......+..+.....+.+ +.+.|+++.
T Consensus 89 --------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~--IvviNK~D~ 140 (394)
T PRK12736 89 --------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYL--VVFLNKVDL 140 (394)
T ss_pred --------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEE--EEEEEecCC
Confidence 1122333456778888888776554433333333333333321 234566664
No 422
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0019 Score=68.84 Aligned_cols=94 Identities=17% Similarity=0.272 Sum_probs=59.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh---HHHHHHHHHHHHhC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP---TRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~---~~L~~wl~~~~k~~ 365 (666)
+--|-.++|+++..+ .-.|+.-+ .++ +|+-. +.+.+|+|=||+||+.++... +.+++|++--. .-
T Consensus 108 AlMDgAlLvIaANEp-cPQPQT~E-Hl~-AleIi--------gik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~-Ae 175 (415)
T COG5257 108 ALMDGALLVIAANEP-CPQPQTRE-HLM-ALEII--------GIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTV-AE 175 (415)
T ss_pred hhhcceEEEEecCCC-CCCCchHH-HHH-HHhhh--------ccceEEEEecccceecHHHHHHHHHHHHHHhcccc-cC
Confidence 345677889988765 33454422 222 23322 345699999999999876422 12222221100 11
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
+ ..|++|||.++.|++.|+++|.++.|.+
T Consensus 176 ~----aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 176 N----APIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred C----CceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 2 2499999999999999999999987643
No 423
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.09 E-value=0.00087 Score=76.97 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=70.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccce--ee--------cccccC------CCCceeEEEEEeeEe-CCceEEEECCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVK--VS--------KLTEAP------IPGTTLGILRIGGIL-PAKAKLYDTPGL 460 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~--~~--------~~t~S~------~PGTT~~~~~~~~~l-~~~~~liDTPGi 460 (666)
..+++++|.+|+|||||+++|+...+.. .+ ..++++ ..|.|.........+ +..+.++||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 4699999999999999999998543321 11 001111 113232221111112 236899999997
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHH
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWK 540 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~ 540 (666)
..... .........+...+.++....+...-...+...+....++ +.+.|+++.........-+-++
T Consensus 90 ~df~~----------~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi---iv~iNK~D~~~a~~~~~l~~i~ 156 (526)
T PRK00741 90 EDFSE----------DTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI---FTFINKLDRDGREPLELLDEIE 156 (526)
T ss_pred hhhHH----------HHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE---EEEEECCcccccCHHHHHHHHH
Confidence 53221 1122345678888888876544332212222232223343 3456788865544333333345
Q ss_pred hhcCC
Q 005972 541 NHVGI 545 (666)
Q Consensus 541 k~~g~ 545 (666)
..+|.
T Consensus 157 ~~l~~ 161 (526)
T PRK00741 157 EVLGI 161 (526)
T ss_pred HHhCC
Confidence 55554
No 424
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.08 E-value=0.00074 Score=67.07 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=34.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+++++...... ..+.|+.+.......+.. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP-------KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-------cCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999998654221 222333222211111222 46799999965
No 425
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0047 Score=69.80 Aligned_cols=99 Identities=22% Similarity=0.244 Sum_probs=66.1
Q ss_pred CchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|++.-...|..+ ...-+|+|++||.+-| |..|+... .| ++-+. .+.|+|+++||||.-. .
T Consensus 209 PGHaAF~aMRaR-----GA~vtDIvVLVVAadD--GVmpQT~E-aI-khAk~---------A~VpiVvAinKiDkp~--a 268 (683)
T KOG1145|consen 209 PGHAAFSAMRAR-----GANVTDIVVLVVAADD--GVMPQTLE-AI-KHAKS---------ANVPIVVAINKIDKPG--A 268 (683)
T ss_pred CcHHHHHHHHhc-----cCccccEEEEEEEccC--CccHhHHH-HH-HHHHh---------cCCCEEEEEeccCCCC--C
Confidence 887666666654 5667899999999988 77876532 22 22222 3569999999999643 2
Q ss_pred ChHHHHHHHHHHH------HhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 350 SPTRLDRWVRHRA------KAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 350 ~~~~L~~wl~~~~------k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+.++ .+++. +.+|- -..+++|||++|.|++.|.+.|.-
T Consensus 269 ~pekv---~~eL~~~gi~~E~~GG--dVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 269 NPEKV---KRELLSQGIVVEDLGG--DVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CHHHH---HHHHHHcCccHHHcCC--ceeEEEeecccCCChHHHHHHHHH
Confidence 32332 22222 23332 245899999999999999887753
No 426
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.07 E-value=0.0012 Score=63.97 Aligned_cols=80 Identities=20% Similarity=0.103 Sum_probs=45.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+|++||.+|||||||+|+++...-.. ...|-+..+.......+. ..+.++||||...... .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK------NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC----------I 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh----------h
Confidence 68999999999999999999753211 112222223221111122 2578999999753221 1
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...++.+..+
T Consensus 66 ~~~~~~~ad~~ilv~d~~~ 84 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTD 84 (170)
T ss_pred HHHHhcCCCEEEEEEECcC
Confidence 1123455666666666544
No 427
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.07 E-value=0.0011 Score=65.03 Aligned_cols=23 Identities=22% Similarity=0.614 Sum_probs=20.8
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~ 24 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR 24 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999999654
No 428
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.07 E-value=0.001 Score=63.75 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=33.1
Q ss_pred EEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
|+++|.+|||||||+|+++...... ...| |+.+.......++. .+.++||||...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE------DYVP-TVFENYSADVEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC------CCCC-cEEeeeeEEEEECCEEEEEEEEECCCCcc
Confidence 5789999999999999998754221 1122 22221111111222 468999999653
No 429
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.06 E-value=0.001 Score=66.13 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+++++...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~ 30 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNT 30 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998653
No 430
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.06 E-value=0.0028 Score=60.90 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=54.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC---CCCChHHHHHHHHHHHHhC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~ 365 (666)
..+|.+++|.|+.+... + ..+ ..++..+.... .....|+++|.||.||.. ........+.| .++.
T Consensus 64 ~~~~~~ilv~d~~~~~s-f-~~~-~~~~~~i~~~~-----~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~----~~~~ 131 (158)
T cd04103 64 SWVDAVIFVFSLENEAS-F-QTV-YNLYHQLSSYR-----NISEIPLILVGTQDAISESNPRVIDDARARQL----CADM 131 (158)
T ss_pred hcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHH----HHHh
Confidence 46899999999998532 1 122 22333333211 012358999999999852 22222222333 3333
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
+ .-.++.+||++|.|+++++..+.+
T Consensus 132 ~---~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 K---RCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred C---CCcEEEEecCCCCCHHHHHHHHHh
Confidence 2 113889999999999999988764
No 431
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.06 E-value=0.0011 Score=63.71 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++++|.+|||||||++++++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~ 25 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ 25 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999754
No 432
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.04 E-value=0.0024 Score=61.16 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=67.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
.++++||.+++|||||+++|.+... ...-|..+... ..+|||||=.-.+... ...++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~----------~~~KTq~i~~~-------~~~IDTPGEyiE~~~~------y~aLi 58 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI----------RYKKTQAIEYY-------DNTIDTPGEYIENPRF------YHALI 58 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC----------CcCccceeEec-------ccEEECChhheeCHHH------HHHHH
Confidence 3799999999999999999987542 12223333221 2459999965443321 23344
Q ss_pred HhhhhcCceeEEecCCC--cccccceEEEeecccccceEEEEEecCCccccc--ccccccHHHHHHh
Q 005972 479 EIRKELQPRTYRVKARQ--AVHVGGLMRLDLDQASVETIYVTVWASPNVSLH--LGKIENADEIWKN 541 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~--~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h--~tk~e~a~e~~~k 541 (666)
....+.+...+..++.. +.+.-|++.. .. +++ +. +..+++.. ..+.++|.++++.
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~fa~~--f~---~pv-IG--VITK~Dl~~~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPGFASM--FN---KPV-IG--VITKIDLPSDDANIERAKKWLKN 117 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCchhhcc--cC---CCE-EE--EEECccCccchhhHHHHHHHHHH
Confidence 55677888888777653 5555565543 22 233 22 33555554 4566777777664
No 433
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.04 E-value=0.0013 Score=65.37 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 KivivG~~~vGKTsli~~l~~~~ 24 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI 24 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999653
No 434
>PLN03110 Rab GTPase; Provisional
Probab=97.01 E-value=0.0014 Score=66.34 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=35.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+++|++..... ...|.++.+.......++. .+.|+||||-.
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~------~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCL------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999998654221 1123222232221112232 56889999953
No 435
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.01 E-value=0.0014 Score=62.52 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.++.++|.+|||||||+|+++...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~ 26 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998653
No 436
>PTZ00369 Ras-like protein; Provisional
Probab=97.01 E-value=0.0011 Score=65.34 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++++|.+|||||||+++++...
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~ 29 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNH 29 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999654
No 437
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.00 E-value=0.0081 Score=60.36 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=33.6
Q ss_pred cccc-CEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 288 NANA-GVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 288 l~~a-DvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
...+ +.||+|+|+.+...+ .......+...+... ...+...|+++|+||+|+....
T Consensus 69 ~~~~~~~vV~VvD~~~~~~~-~~~~~~~l~~il~~~----~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 69 LKNSAKGIVFVVDSATFQKN-LKDVAEFLYDILTDL----EKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HhccCCEEEEEEECccchhH-HHHHHHHHHHHHHHH----hhccCCCCEEEEecchhhcccC
Confidence 3445 999999999985311 223333443333221 1111357999999999997543
No 438
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.99 E-value=0.0015 Score=63.93 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.8
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~ 24 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998654
No 439
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.99 E-value=0.0018 Score=63.66 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=46.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|.++|.+|||||||++++....... ..+..|.+.. .+.. -+-.+.++||||...... ..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-----~~~T~~~~~~--~~~~-~~~~~~l~D~~G~~~~~~----------~~ 78 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-----TIPTIGFNVE--TVEY-KNLKFTMWDVGGQDKLRP----------LW 78 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-----cCCccccceE--EEEE-CCEEEEEEECCCCHhHHH----------HH
Confidence 4689999999999999999996432211 1111222221 1211 123578999999742111 11
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
....+..+...|+++..
T Consensus 79 ~~~~~~ad~iI~v~D~t 95 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSN 95 (182)
T ss_pred HHHhcCCCEEEEEEeCC
Confidence 22345667777777764
No 440
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.99 E-value=0.0012 Score=74.97 Aligned_cols=92 Identities=20% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecc---------------------------cccCCCCceeEEEEEeeEe-
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKL---------------------------TEAPIPGTTLGILRIGGIL- 448 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~---------------------------t~S~~PGTT~~~~~~~~~l- 448 (666)
+..+++++|.+|+|||||+++|+...+....+. ..-...|.|.+........
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 346899999999999999999987654322100 0011245566654332222
Q ss_pred CCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccc
Q 005972 449 PAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVH 498 (666)
Q Consensus 449 ~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~ 498 (666)
+.++.++||||.. . + ...+..-....+...+.++....+.
T Consensus 106 ~~~i~~iDTPGh~--~-----f---~~~~~~~l~~aD~allVVDa~~G~~ 145 (474)
T PRK05124 106 KRKFIIADTPGHE--Q-----Y---TRNMATGASTCDLAILLIDARKGVL 145 (474)
T ss_pred CcEEEEEECCCcH--H-----H---HHHHHHHHhhCCEEEEEEECCCCcc
Confidence 2368999999932 1 1 1123334577788899998866553
No 441
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.97 E-value=0.0017 Score=62.71 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=37.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
+++++|.+|||||||+++++...-. ...+.|+.+.......+++ .+.++||||....
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP-------TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh
Confidence 5889999999999999999864321 1344455444333222332 4678999998543
No 442
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.97 E-value=0.00056 Score=61.57 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=45.1
Q ss_pred EEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe---CCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL---PAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 403 vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l---~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
++|.+|+|||||+|+|++...... ....|..+........ ...+.++||||....... ...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~ 64 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL----------RRL 64 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc------ccccchhheeeEEEEECCEEEEEEEEecCChHHHHhH----------HHH
Confidence 579999999999999997654211 1111112222222111 236789999997643321 123
Q ss_pred hhhhcCceeEEecCCCcc
Q 005972 480 IRKELQPRTYRVKARQAV 497 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~~l 497 (666)
..+..+...|.++..+..
T Consensus 65 ~~~~~~~~i~v~d~~~~~ 82 (157)
T cd00882 65 YYRGADGIILVYDVTDRE 82 (157)
T ss_pred HhcCCCEEEEEEECcCHH
Confidence 345566667777665543
No 443
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.97 E-value=0.0008 Score=68.28 Aligned_cols=87 Identities=24% Similarity=0.190 Sum_probs=57.0
Q ss_pred cEEEEeecCCChhhHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-CceE
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AKAK 453 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~-------------------------~~~t~S~~PGTT~~~~~~~~~l~-~~~~ 453 (666)
+|+++|.+++|||||+.+|+...+... .........|+|++.......+. ..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 588999999999999999975433210 01112246789999766654333 3689
Q ss_pred EEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 454 LYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 454 liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
++||||..... ..+.......+...++++....
T Consensus 81 liDtpG~~~~~----------~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFV----------PNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHH----------HHHHHHhhhCCEEEEEEECCCC
Confidence 99999964211 1223344567788888887653
No 444
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.96 E-value=0.0017 Score=63.27 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~ 24 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK 24 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998654
No 445
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0012 Score=71.92 Aligned_cols=66 Identities=21% Similarity=0.170 Sum_probs=39.8
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee-ecccccCCCCceeEEEEEeeEeCC-----ceEEEECCCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV-SKLTEAPIPGTTLGILRIGGILPA-----KAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~-~~~t~S~~PGTT~~~~~~~~~l~~-----~~~liDTPGi~~~~ 464 (666)
-+++++|.+|.|||||||+|+....... .....+..|-.|..+......+.. ..+++||||+....
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 4799999999999999999997632211 001112222224333332222221 46899999997543
No 446
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.96 E-value=0.0011 Score=77.42 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=68.3
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.|+++|.+|+|||||+|+|++.. +.........|+|.+........+ ..+.++||||... + ...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~---~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------f---i~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN---ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------F---LSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------H---HHHH
Confidence 47899999999999999998643 222233455789988643322222 2468999999631 1 1224
Q ss_pred HHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 478 VEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
......++...+.++....+.......++.+.....+.+ +.+.||++.
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~i--IVVlNKiDl 116 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPML--TVALTKADR 116 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeE--EEEEECCcc
Confidence 444566788888888776554444333444443332321 235567765
No 447
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=96.94 E-value=0.0012 Score=64.85 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=35.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE--eCCceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI--LPAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~--l~~~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+++....... .+..|.+.....+... -.-.+.++||||..
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-----VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-----CCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 4789999999999999999986542211 1222333333332210 01257899999953
No 448
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.94 E-value=0.00098 Score=77.69 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=55.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec-----c----cccCCCCceeEEEEEeeEe---C---CceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK-----L----TEAPIPGTTLGILRIGGIL---P---AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~-----~----t~S~~PGTT~~~~~~~~~l---~---~~~~liDTPGi~~~ 463 (666)
+++.++|.+++|||||+++|+...+....+ . ......|.|.....+...+ + -.+.|+||||....
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998754321110 0 0012357776643332222 2 24689999999753
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcccc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
.. .+....+..+...+.++..+....
T Consensus 84 ~~----------~v~~~l~~aD~aILVvDat~g~~~ 109 (595)
T TIGR01393 84 SY----------EVSRSLAACEGALLLVDAAQGIEA 109 (595)
T ss_pred HH----------HHHHHHHhCCEEEEEecCCCCCCH
Confidence 22 112334556777788877654433
No 449
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0039 Score=62.27 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=88.2
Q ss_pred CCCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhh----cCCceeecccccceecceecccccccccCchhH
Q 005972 200 LDGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKE----KGEVTVCARCHSLRNYGQVKNEVAENLIPDFDF 274 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~----~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~ 274 (666)
+-.|-...+|--+||||.| +|-...+.-..-. |--+ .....+-.|-.||+.|... +...|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~Yq------ATIGiDFlskt~~l~d~~vrLQlWDTA---------GQERF 84 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQ------ATIGIDFLSKTMYLEDRTVRLQLWDTA---------GQERF 84 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccc------ceeeeEEEEEEEEEcCcEEEEEEEecc---------cHHHH
Confidence 4456667789999998854 8766665111000 0000 0011122333344333221 11123
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH
Q 005972 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+ |+.+.++.++|.|.|+.+-.. +. ....+| +.+++.. .....-++||.||.||+.+..- . .
T Consensus 85 rsli------psY~Rds~vaviVyDit~~~S-fe-~t~kWi-~dv~~e~-----gs~~viI~LVGnKtDL~dkrqv-s-~ 148 (221)
T KOG0094|consen 85 RSLI------PSYIRDSSVAVIVYDITDRNS-FE-NTSKWI-EDVRRER-----GSDDVIIFLVGNKTDLSDKRQV-S-I 148 (221)
T ss_pred hhhh------hhhccCCeEEEEEEeccccch-HH-HHHHHH-HHHHhcc-----CCCceEEEEEcccccccchhhh-h-H
Confidence 2222 235678899999999998643 21 223333 2222211 1123458889999999976431 0 1
Q ss_pred HHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
++ -...+++++. ..+-+||+.|.|+++|...|...+++
T Consensus 149 eE-g~~kAkel~a----~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 149 EE-GERKAKELNA----EFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HH-HHHHHHHhCc----EEEEecccCCCCHHHHHHHHHHhccC
Confidence 11 0122345552 36679999999999999999887764
No 450
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.90 E-value=0.0012 Score=59.41 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=33.7
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEE--EEEeeEeCCceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI--LRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~--~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+|+|.+||||||||++|++....... ......+.|... ...... ...+.+.|++|-.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~ 61 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNS--VPEETSEITIGVDVIVVDGD-RQSLQFWDFGGQE 61 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------SSTTSCEEEEEEEETTE-EEEEEEEEESSSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccc--cccccCCCcEEEEEEEecCC-ceEEEEEecCccc
Confidence 4889999999999999999976543100 011233333332 221110 1136788999984
No 451
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.89 E-value=0.0021 Score=61.96 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.0
Q ss_pred cEEEEeecCCChhhHHHhhhcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+++++|.+|||||||+|+++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 452
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.89 E-value=0.0016 Score=58.55 Aligned_cols=49 Identities=31% Similarity=0.374 Sum_probs=29.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
...+|++++|+|+.+.. ++ .....++.+|.... +.. ...|++||.||.|
T Consensus 71 ~~~~d~~ilv~D~s~~~-s~--~~~~~~~~~l~~~~---~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPE-SL--EYLSQLLKWLKNIR---KRD-KNIPIILVGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECCGHH-HH--HHHHHHHHHHHHHH---HHS-SCSEEEEEEE-TC
T ss_pred hhcCcEEEEEEcCCChH-HH--HHHHHHHHHHHHHH---ccC-CCCCEEEEEeccC
Confidence 45689999999998842 11 11122344454432 111 3479999999998
No 453
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.87 E-value=0.0018 Score=62.00 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=45.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|.++|.+|||||||+++|....-. +..|.+..+...+.. -.-.+.++||||...... ....
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-------~~~pt~g~~~~~~~~-~~~~~~l~D~~G~~~~~~----------~~~~ 63 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP----------LWRH 63 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-------ccCCCCCcceEEEEE-CCEEEEEEECCCCHhHHH----------HHHH
Confidence 6899999999999999999643221 112321111111211 123578999999742111 1123
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...|+++..+
T Consensus 64 ~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 64 YFQNTQGLIFVVDSND 79 (159)
T ss_pred HhcCCCEEEEEEeCCC
Confidence 4566777788877644
No 454
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.87 E-value=0.0015 Score=77.81 Aligned_cols=117 Identities=16% Similarity=0.077 Sum_probs=66.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceee------cccc----cCCCCceeEEEEEe----eEe-CCceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS------KLTE----APIPGTTLGILRIG----GIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~------~~t~----S~~PGTT~~~~~~~----~~l-~~~~~liDTPGi~~~ 463 (666)
.+|+++|..++|||||+++|+...+.... .... ....|+|.+...+. ... +..+.++||||....
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 58999999999999999999864322100 0001 11256665532211 011 235799999999753
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.. .........+...+.++...++.......+........+. +.+.|+++..
T Consensus 100 ~~----------~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~---ivviNKiD~~ 151 (720)
T TIGR00490 100 GG----------DVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKP---VLFINKVDRL 151 (720)
T ss_pred HH----------HHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCE---EEEEEChhcc
Confidence 21 1234567778888888876655443322233222222333 2456777754
No 455
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.87 E-value=0.0023 Score=61.21 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=33.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+++++|.+|||||||+++++...-.. ...|..+.+.......+++ .+.++||||-.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 58899999999999999998653221 1222222222211111222 46789999954
No 456
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.86 E-value=0.0015 Score=67.05 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=63.3
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecc----------cccCCCCceeEEEEEeeEe-----------CCceEEEECC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKL----------TEAPIPGTTLGILRIGGIL-----------PAKAKLYDTP 458 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~----------t~S~~PGTT~~~~~~~~~l-----------~~~~~liDTP 458 (666)
+|+++|..+.|||||+++|+...+...... ......|.|.....+...+ ...+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 789999999999999999986554321100 0011233343322111112 1246889999
Q ss_pred CCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 459 GLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 459 Gi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
|...... ......+..+...+.++....+...-...+........++ +.+.||++..
T Consensus 82 G~~~f~~----------~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~---ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSS----------EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKP---VLVINKIDRL 138 (222)
T ss_pred CccccHH----------HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCE---EEEEECCCcc
Confidence 9874221 2334557778888888876655433222222222122343 3456777754
No 457
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.86 E-value=0.0011 Score=66.92 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=50.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceee---------ccc----ccCCCCceeEEEEEeeEeC------CceEEEECCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVS---------KLT----EAPIPGTTLGILRIGGILP------AKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~---------~~t----~S~~PGTT~~~~~~~~~l~------~~~~liDTPGi 460 (666)
+|.++|.+++|||||+++|+........ ... .....|+|.....+...+. ..+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 000 0012334433222211111 24689999997
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
..... .........+...+.++.....
T Consensus 82 ~~f~~----------~~~~~~~~aD~~llVvD~~~~~ 108 (213)
T cd04167 82 VNFMD----------EVAAALRLSDGVVLVVDVVEGV 108 (213)
T ss_pred cchHH----------HHHHHHHhCCEEEEEEECCCCC
Confidence 64211 1223455677778888765443
No 458
>PRK10218 GTP-binding protein; Provisional
Probab=96.86 E-value=0.002 Score=75.14 Aligned_cols=119 Identities=15% Similarity=0.041 Sum_probs=67.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec----------ccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK----------LTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~----------~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~ 467 (666)
.+|+++|..++|||||+++|+...+..... .......|.|.........+. ..+.++||||......
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 479999999999999999999743321110 001234577766543332232 3678999999754321
Q ss_pred ccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccccc
Q 005972 468 MRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLG 530 (666)
Q Consensus 468 ~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~t 530 (666)
......+..+...+.++........-...+........+. +.+.|+++....
T Consensus 84 --------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~---IVviNKiD~~~a 135 (607)
T PRK10218 84 --------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP---IVVINKVDRPGA 135 (607)
T ss_pred --------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE---EEEEECcCCCCC
Confidence 1223457778888888876554332222222222222333 235677776543
No 459
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.86 E-value=0.0025 Score=69.15 Aligned_cols=64 Identities=28% Similarity=0.281 Sum_probs=39.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCC----ceeEEEEEeeEeC-----CceEEEECCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG----TTLGILRIGGILP-----AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG----TT~~~~~~~~~l~-----~~~~liDTPGi~~~ 463 (666)
.-++++||.+|.||||+||.|++....... ..-...+ .|..+......+. -.+.+|||||+...
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~--~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDET--EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCC--CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 458999999999999999999987322211 0001111 2333332222222 25689999999854
No 460
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0017 Score=70.67 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=49.1
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccce-ecc--------eecccccccccCch
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLR-NYG--------QVKNEVAENLIPDF 272 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr-~yg--------kv~~~~~~~~iP~~ 272 (666)
+...+||-|||||||| |.+.+.. .....-+++--.-+...-.+-..||..|- .++ -++-...--++|+-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4556899999997777 8777766 22223333210000011111224444432 111 11110111123554
Q ss_pred hHHHHHHHHhcCcccccccCEEEEEEecCC
Q 005972 273 DFDRVIATRLMKPSGNANAGVVVMVVDCVD 302 (666)
Q Consensus 273 d~~~~L~~~l~~P~al~~aDvVV~VVDa~D 302 (666)
+-.+=|.+++.. .+.++|.|++|||+++
T Consensus 82 s~GeGLGNkFL~--~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLD--NIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHH--hhhhcCeEEEEEEecC
Confidence 444444455555 5678999999999983
No 461
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.82 E-value=0.021 Score=57.66 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=32.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhh----------------hhhcCCCcEEEEEECCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDA----------------KLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~----------------~~~~~~kpvILVlNKiDLLpk 347 (666)
...+++++|+|.|+.+.... ..+ -.|+....... .......|+|||.||+||.+.
T Consensus 74 ~yr~ad~iIlVyDvtn~~Sf--~~l----~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 74 FYNQVNGIILVHDLTNRKSS--QNL----QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HhCcCCEEEEEEECcChHHH--HHH----HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 34579999999999985321 122 22332221100 001134689999999999864
No 462
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.81 E-value=0.0012 Score=76.87 Aligned_cols=110 Identities=17% Similarity=0.056 Sum_probs=58.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCC-ceeEE--EEEeeE--------------e---CCceEEEECC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG-TTLGI--LRIGGI--------------L---PAKAKLYDTP 458 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG-TT~~~--~~~~~~--------------l---~~~~~liDTP 458 (666)
..|.++|.+|+|||||+|+|++.... +..|| +|++. ..++.. + ..++.++|||
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~-------~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTp 77 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVA-------KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTP 77 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccc-------cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECC
Confidence 36899999999999999999976422 23344 45431 111100 0 0247899999
Q ss_pred CCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 459 GLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 459 Gi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
|...... .........+...+.++...++....+..+..++....++ +.+.|+++..
T Consensus 78 G~e~f~~----------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpi---IVv~NK~Dl~ 134 (590)
T TIGR00491 78 GHEAFTN----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPF---VVAANKIDRI 134 (590)
T ss_pred CcHhHHH----------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCE---EEEEECCCcc
Confidence 9532111 1112345567777777765443322222223333333343 2345666653
No 463
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.78 E-value=0.0015 Score=67.42 Aligned_cols=73 Identities=29% Similarity=0.291 Sum_probs=49.8
Q ss_pred ecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEE
Q 005972 377 SARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLY 455 (666)
Q Consensus 377 SAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~li 455 (666)
|+-+|.|.+-+.+ ...+|+++|.|.||||||+..|....... ....-||+.++.-...+ +..+.++
T Consensus 48 s~~kg~GFeV~Ks-------GdaRValIGfPSVGKStlLs~iT~T~Sea------A~yeFTTLtcIpGvi~y~ga~IQll 114 (364)
T KOG1486|consen 48 SSGKGEGFEVLKS-------GDARVALIGFPSVGKSTLLSKITSTHSEA------ASYEFTTLTCIPGVIHYNGANIQLL 114 (364)
T ss_pred CCCCCCCeeeecc-------CCeEEEEecCCCccHHHHHHHhhcchhhh------hceeeeEEEeecceEEecCceEEEe
Confidence 4446777654332 13579999999999999999998654321 24555887765432222 3578999
Q ss_pred ECCCCCC
Q 005972 456 DTPGLLH 462 (666)
Q Consensus 456 DTPGi~~ 462 (666)
|.|||..
T Consensus 115 DLPGIie 121 (364)
T KOG1486|consen 115 DLPGIIE 121 (364)
T ss_pred cCccccc
Confidence 9999974
No 464
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.78 E-value=0.019 Score=56.97 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=70.7
Q ss_pred ccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 268 LIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 268 ~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
-+|++.-.++|...+.+ .+.-+|++||++++... -+..++..+... ...|+++.+||.||-+.
T Consensus 74 gtPGq~RF~fm~~~l~~-----ga~gaivlVDss~~~~~----~a~~ii~f~~~~--------~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 74 GTPGQERFKFMWEILSR-----GAVGAIVLVDSSRPITF----HAEEIIDFLTSR--------NPIPVVVAINKQDLFDA 136 (187)
T ss_pred cCCCcHHHHHHHHHHhC-----CcceEEEEEecCCCcch----HHHHHHHHHhhc--------cCCCEEEEeeccccCCC
Confidence 34888877888877544 57888999999986532 345566666541 22689999999999765
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 348 QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.- ++.+..+++.- .+.. .++.++|.+++|..+.+..+...
T Consensus 137 ~p-pe~i~e~l~~~--~~~~----~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 137 LP-PEKIREALKLE--LLSV----PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CC-HHHHHHHHHhc--cCCC----ceeeeecccchhHHHHHHHHHhh
Confidence 43 33455443211 1233 39999999999998888877654
No 465
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.78 E-value=0.0021 Score=71.57 Aligned_cols=90 Identities=22% Similarity=0.175 Sum_probs=56.2
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeec---------------------------ccccCCCCceeEEEEEeeEeC-Cc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSK---------------------------LTEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~---------------------------~t~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
++.++|.+++|||||+++|+...+....+ .......|.|++........+ .+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 68999999999999999998654432110 001123466777654432222 36
Q ss_pred eEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccc
Q 005972 452 AKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 452 ~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
+.++||||... + ...+.......+...+.+++...+..
T Consensus 82 ~~liDtPGh~~-------f---~~~~~~~~~~aD~allVVda~~G~~~ 119 (406)
T TIGR02034 82 FIVADTPGHEQ-------Y---TRNMATGASTADLAVLLVDARKGVLE 119 (406)
T ss_pred EEEEeCCCHHH-------H---HHHHHHHHhhCCEEEEEEECCCCCcc
Confidence 78999999432 1 11233345677888888888765543
No 466
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.77 E-value=0.0025 Score=61.91 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=34.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+++++....... ..-|+.+.......+++ .+.|+||||-..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~-------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY-------HDPTIEDAYKQQARIDNEPALLDILDTAGQAE 62 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC-------cCCcccceEEEEEEECCEEEEEEEEeCCCchh
Confidence 4789999999999999999986432211 11122121111111222 467899999754
No 467
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.75 E-value=0.0016 Score=75.80 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=67.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceee--cc--------cccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS--KL--------TEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~--~~--------t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~ 467 (666)
++|+++|..++|||||+++|+...+.... .+ ......|.|.........+ +..+.|+||||......
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~-- 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGG-- 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHH--
Confidence 37999999999999999999964332110 00 0112456666543322223 33688999999743211
Q ss_pred ccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 468 MRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 468 ~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.+....+..+...+.+++.......-...+..+.....++ +.+.||++..
T Consensus 80 --------ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~---IVviNKiD~~ 129 (594)
T TIGR01394 80 --------EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP---IVVINKIDRP 129 (594)
T ss_pred --------HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE---EEEEECCCCC
Confidence 1233456678888888876554333223333333333343 3456888864
No 468
>PLN03108 Rab family protein; Provisional
Probab=96.75 E-value=0.0027 Score=63.88 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=34.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+|+|+........ ....|++.....+. ++. .+.++||||..
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~----~~ti~~~~~~~~i~--~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMIT--IDNKPIKLQIWDTAGQE 66 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceEEEEEEE--ECCEEEEEEEEeCCCcH
Confidence 47999999999999999999865432211 11223222211111 221 46799999954
No 469
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.73 E-value=0.015 Score=57.96 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=55.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH-------HHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD-------RWVRH 360 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~-------~wl~~ 360 (666)
...++.+++++|..++..+. ...+.+.+.+..... ...|+++|.||+||.........+. .+...
T Consensus 75 ~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~l~~~~~------~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (219)
T COG1100 75 YRGANGILIVYDSTLRESSD--ELTEEWLEELRELAP------DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVL 146 (219)
T ss_pred hcCCCEEEEEEecccchhhh--HHHHHHHHHHHHhCC------CCceEEEEecccccccchhHHHHHHhhhhcCcchhhh
Confidence 35688999999998854432 233344444443210 1358999999999987643211110 01100
Q ss_pred --HHHhCCCCCcceEEEEecc--cCcChhhHHHHHHhh
Q 005972 361 --RAKAGGAPKLNGVYLVSAR--KDLGVRNLLAFIKEL 394 (666)
Q Consensus 361 --~~k~~g~~~~~~V~~VSAk--kg~GveeLl~~I~~~ 394 (666)
........... .+.+|++ .+.++.++...+...
T Consensus 147 ~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~ 183 (219)
T COG1100 147 APKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRK 183 (219)
T ss_pred HhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHH
Confidence 00011000123 7889999 999999888776543
No 470
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.73 E-value=0.0025 Score=64.02 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=47.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE---eCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI---LPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~---l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+|+++|.+|||||||+++|....... ..+.++.+...+... -+..+.|+||||..... ..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~-------t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~----------~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS-------TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR----------DK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-------ccCcEeecceEEEeecCCCCceEEEEECCCCHHHH----------HH
Confidence 58999999999999999998753221 112222221111100 12468899999965321 11
Q ss_pred HHHhhhhc-CceeEEecCCCc
Q 005972 477 MVEIRKEL-QPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel-~~~~f~l~~~~~ 496 (666)
.....+.. +...|+++....
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~ 85 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATF 85 (203)
T ss_pred HHHHHhccCCEEEEEEECccc
Confidence 12223344 888888887653
No 471
>PLN03126 Elongation factor Tu; Provisional
Probab=96.71 E-value=0.0019 Score=73.33 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCCccEEEEeecCCChhhHHHhhhcccccee----------ecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCC
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKV----------SKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~----------~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
.+..++.++|.+|+|||||+++|+...+... .........|+|.+........ +..+.++||||.....
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 3456899999999999999999996432211 1112234578888865544322 3468999999965310
Q ss_pred cccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 465 LMSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 465 ~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
..+.......+...+.+++..++
T Consensus 159 ----------~~~~~g~~~aD~ailVVda~~G~ 181 (478)
T PLN03126 159 ----------KNMITGAAQMDGAILVVSGADGP 181 (478)
T ss_pred ----------HHHHHHHhhCCEEEEEEECCCCC
Confidence 12233344567777777766544
No 472
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.69 E-value=0.0016 Score=65.03 Aligned_cols=60 Identities=28% Similarity=0.286 Sum_probs=36.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeeccc-ccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT-EAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t-~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.+++++|.+|||||||+|+|.+.........+ ....|+.+...... .-...++||+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~Dt~gq~~ 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR----NIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC----EEEEEeecCCCHHH
Confidence 47999999999999999999976543321111 12222222221100 11368899999763
No 473
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.69 E-value=0.0014 Score=71.75 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=47.9
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCce-------eecccccce-ecceecccccccccCchh
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVT-------VCARCHSLR-NYGQVKNEVAENLIPDFD 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~-------vCqRC~rLr-~ygkv~~~~~~~~iP~~d 273 (666)
...++||+||+||||| |+|.+.+ +++...+.+.-.-......+ ++..|...+ .+..+.-....-++++.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 3456799999997765 9999988 44444444300000000000 011111110 000111000001112233
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCC
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVD 302 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~D 302 (666)
..+-|.+++.+ .+.++|++++|||++.
T Consensus 82 ~g~glg~~fL~--~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 KGEGLGNQFLA--NIREVDAIVHVVRCFE 108 (364)
T ss_pred hHHHHHHHHHH--HHHhCCEEEEEEeCCc
Confidence 34456666666 6789999999999963
No 474
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.68 E-value=0.002 Score=71.97 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=56.5
Q ss_pred CccEEEEeecCCChhhHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-Cc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~-------------------------~~~t~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
..++.++|.+++|||||+++|+...+... .........|+|++........+ ..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 46799999999999999999986433211 00111235689998766543332 36
Q ss_pred eEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 452 AKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 452 ~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
+.|+||||... . ...+.......+...++++..+.
T Consensus 87 i~iiDtpGh~~--f--------~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 87 VTIVDCPGHRD--F--------IKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred EEEEECCCHHH--H--------HHHHHhhhhhCCEEEEEEECCCC
Confidence 78999999431 1 01223334567777888877654
No 475
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.67 E-value=0.0077 Score=63.67 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=41.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+++++++++...- +. ...+..+++.|. ...|+|+|+||+|++..... ..++..++......+++
T Consensus 113 ~rvh~~ly~i~~~~~-~l--~~~D~~~lk~l~----------~~v~vi~VinK~D~l~~~e~-~~~k~~i~~~l~~~~i~ 178 (276)
T cd01850 113 TRVHACLYFIEPTGH-GL--KPLDIEFMKRLS----------KRVNIIPVIAKADTLTPEEL-KEFKQRIMEDIEEHNIK 178 (276)
T ss_pred CceEEEEEEEeCCCC-CC--CHHHHHHHHHHh----------ccCCEEEEEECCCcCCHHHH-HHHHHHHHHHHHHcCCc
Confidence 368899999987641 21 223344445443 23589999999999875432 22333344444555643
Q ss_pred CcceEEEEec
Q 005972 369 KLNGVYLVSA 378 (666)
Q Consensus 369 ~~~~V~~VSA 378 (666)
++..+.
T Consensus 179 ----~~~~~~ 184 (276)
T cd01850 179 ----IYKFPE 184 (276)
T ss_pred ----eECCCC
Confidence 555443
No 476
>PRK12740 elongation factor G; Reviewed
Probab=96.67 E-value=0.0017 Score=76.65 Aligned_cols=129 Identities=16% Similarity=0.050 Sum_probs=71.9
Q ss_pred EeecCCChhhHHHhhhccccceeec--c----ccc------CCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccC
Q 005972 404 IGAQNAGKSTLINTFAKKEGVKVSK--L----TEA------PIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRL 470 (666)
Q Consensus 404 vG~~NVGKSTLiN~L~~~~~~~~~~--~----t~S------~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L 470 (666)
||.+|+|||||+|+|+...+..... + ++. ..+|.|.+.......+. ..+.++||||.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 5899999999999997665432110 0 111 13566655433332232 368999999985311
Q ss_pred ChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 471 NRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 471 ~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
..........+...+.+++.+.........+..+.....+++ .+.|+++..........+-+++.+|.
T Consensus 75 ----~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i---iv~NK~D~~~~~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 75 ----GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI---IFVNKMDRAGADFFRVLAQLQEKLGA 142 (668)
T ss_pred ----HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE---EEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 112234556788888888876554333322333333333432 35678876544444455555555554
No 477
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.67 E-value=0.0033 Score=63.90 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=37.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~ 463 (666)
..+|++||.+|||||||+++++....... ..+..|++.....+. .+ -.+.++||||....
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~--~~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFF--TNCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEE--ECCeEEEEEEEECCCchhh
Confidence 35899999999999999999875432111 122334333332221 11 25789999997543
No 478
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.67 E-value=0.004 Score=60.71 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
++.++|.+|||||||+++++...-.. ....|+.+.......++. .+.|+||||-...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~-------~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPS-------EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 62 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-------CCCCceeeeeEEEEEECCEEEEEEEEECCCccch
Confidence 68999999999999999998643211 122232222221112222 4679999998643
No 479
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.66 E-value=0.0054 Score=65.82 Aligned_cols=129 Identities=11% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHH
Q 005972 200 LDGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVI 278 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L 278 (666)
..-+..+++|++|+||| ++|++.++++..++.... ......|..++. .|. .- .-+..|++.-...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-------~t~~~~~~~~~~---~G~-~l--~VIDTPGL~d~~~~ 102 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-------EGLRPMMVSRTR---AGF-TL--NIIDTPGLIEGGYI 102 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-------cceeEEEEEEEE---CCe-EE--EEEECCCCCchHHH
Confidence 45677788999999955 559999998765543321 112223333221 111 00 01123654422222
Q ss_pred HHHhcC----cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 279 ATRLMK----PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 279 ~~~l~~----P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
++.+.. =......|+|++|....... ....+..+++.+..... ... -.+.|+|+|+.|.++++
T Consensus 103 ~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R---~~~~DkqlLk~Iqe~FG-~~i---w~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 103 NDQAVNIIKRFLLGKTIDVLLYVDRLDAYR---VDTLDGQVIRAITDSFG-KDI---WRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeccCccc---CCHHHHHHHHHHHHHhh-hhh---hccEEEEEECCccCCCC
Confidence 222111 00113689999995433211 11234455565554321 111 13689999999999653
No 480
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0088 Score=64.29 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=63.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHH---h
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK---A 364 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k---~ 364 (666)
..-.|+.++|+|+.. |-.++..+-.++-.+- -+..|+|+||+|++|......++.+..+.+.+ +
T Consensus 91 aqiiDlm~lviDv~k--G~QtQtAEcLiig~~~-----------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 91 AQIIDLMILVIDVQK--GKQTQTAECLIIGELL-----------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred hheeeeeeEEEehhc--ccccccchhhhhhhhh-----------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 445799999999987 5555554444333221 13579999999999987766666655444443 4
Q ss_pred CCCCCcceEEEEecccC----cChhhHHHHHHhh
Q 005972 365 GGAPKLNGVYLVSARKD----LGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg----~GveeLl~~I~~~ 394 (666)
.++..-..|+.+||+.| .++.+|.+.|...
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 44332345999999999 7788888877654
No 481
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=96.62 E-value=0.0014 Score=69.38 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=45.6
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecc------cccce--ecceecccccccccCchhHHH
Q 005972 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCAR------CHSLR--NYGQVKNEVAENLIPDFDFDR 276 (666)
Q Consensus 206 a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqR------C~rLr--~ygkv~~~~~~~~iP~~d~~~ 276 (666)
++||+||+||||| |+|.+.++ .+...+.+--........+-+.| |+.-+ .+..+.-....-++++.+...
T Consensus 2 givG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 4699999997765 99999886 44444433100000011111111 11111 011111100011112222334
Q ss_pred HHHHHhcCcccccccCEEEEEEecCC
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVD 302 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~D 302 (666)
-|.+++.. .+.++|++++|||+++
T Consensus 81 glg~~fL~--~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLS--HIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHH--HHHhCCEEEEEEeCcC
Confidence 45555555 6778999999999863
No 482
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.62 E-value=0.003 Score=60.84 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=46.9
Q ss_pred EEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHh
Q 005972 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEI 480 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~ 480 (666)
|+++|.+|||||||+++++........ .+..|. +...+.. -+..+.++||||-...... ....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~--~~~~i~~-~~~~l~i~Dt~G~~~~~~~----------~~~~ 64 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGF--NSVAIPT-QDAIMELLEIGGSQNLRKY----------WKRY 64 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCc--ceEEEee-CCeEEEEEECCCCcchhHH----------HHHH
Confidence 789999999999999999965322110 111222 1222221 1235789999996532211 1134
Q ss_pred hhhcCceeEEecCCCc
Q 005972 481 RKELQPRTYRVKARQA 496 (666)
Q Consensus 481 ~kel~~~~f~l~~~~~ 496 (666)
.+..+...|+++....
T Consensus 65 ~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 65 LSGSQGLIFVVDSADS 80 (164)
T ss_pred HhhCCEEEEEEECCCH
Confidence 5667778888876543
No 483
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.62 E-value=0.0033 Score=61.78 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=46.8
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|.++|.+|||||||+++|....-.. ..|.+..+...+.. -.-.+.++||||-.... ...
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-------~~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~~~----------~~~ 78 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEY-KNISFTVWDVGGQDKIR----------PLW 78 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-------ccCCcceeEEEEEE-CCEEEEEEECCCCHHHH----------HHH
Confidence 4589999999999999999997532211 12222222222221 12357899999942111 111
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|+++..+
T Consensus 79 ~~~~~~a~~iI~V~D~s~ 96 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSND 96 (181)
T ss_pred HHHhccCCEEEEEEeCCc
Confidence 223466677788777654
No 484
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.61 E-value=0.0037 Score=60.81 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=47.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..++.++|.+|||||||+++|...... ...|.+..+...+.. -.-.+.++||||...... ..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-------~~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~~~~----------~~ 74 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-------TTIPTIGFNVETVTY-KNISFTVWDVGGQDKIRP----------LW 74 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-------CcCCccccceEEEEE-CCEEEEEEECCCChhhHH----------HH
Confidence 468999999999999999999643211 122322222222221 122578999999643211 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|.++..+
T Consensus 75 ~~~~~~ad~ii~v~D~t~ 92 (175)
T smart00177 75 RHYYTNTQGLIFVVDSND 92 (175)
T ss_pred HHHhCCCCEEEEEEECCC
Confidence 223466677777777643
No 485
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.61 E-value=0.003 Score=65.69 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=34.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+++...-.. ....|+.+.......+++ .+.|+||+|..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-------~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-------QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-------CCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 58999999999999999998643211 223333332221111222 45799999965
No 486
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=96.60 E-value=0.019 Score=57.03 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=84.8
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHHhc
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLM 283 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~ 283 (666)
.+++|-++||++ |||+.+-+|-+.+.+--.- +.=..-...+=+|..-|..+.. .+.+-.+.|.-.
T Consensus 12 ViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg--adFltKev~Vd~~~vtlQiWDT----------AGQERFqsLg~a-- 77 (210)
T KOG0394|consen 12 VIILGDSGVGKTSLMNQYVNKKFSQQYKATIG--ADFLTKEVQVDDRSVTLQIWDT----------AGQERFQSLGVA-- 77 (210)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHHHhccccc--hhheeeEEEEcCeEEEEEEEec----------ccHHHhhhcccc--
Confidence 356899999955 7799999986633321110 0000000111122222222211 122222222222
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC---CCCChHHHHHHHHH
Q 005972 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRH 360 (666)
Q Consensus 284 ~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~ 360 (666)
-...+|..++|-|..++.... .++..--++|.+.. +. .+..=|+||+.||+|+-. ...+..+.+.|-
T Consensus 78 ---FYRgaDcCvlvydv~~~~Sfe--~L~~Wr~EFl~qa~--~~-~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC-- 147 (210)
T KOG0394|consen 78 ---FYRGADCCVLVYDVNNPKSFE--NLENWRKEFLIQAS--PQ-DPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC-- 147 (210)
T ss_pred ---eecCCceEEEEeecCChhhhc--cHHHHHHHHHHhcC--CC-CCCcccEEEEcccccCCCCccceeeHHHHHHHH--
Confidence 235788888888887754321 22222223333321 11 112238999999999965 445556667774
Q ss_pred HHHhCC-CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 361 RAKAGG-APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 361 ~~k~~g-~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
+..| ++ .|-+|||...++++....+..
T Consensus 148 --~s~gnip----yfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 148 --KSKGNIP----YFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred --HhcCCce----eEEecccccccHHHHHHHHHH
Confidence 3333 33 678999999999998877754
No 487
>PTZ00416 elongation factor 2; Provisional
Probab=96.60 E-value=0.009 Score=72.43 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=32.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL 345 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL 345 (666)
++..+|.+++|||+.+ |..+. .+.++..+.. .+.|+|+++||+|++
T Consensus 112 al~~~D~ailVvda~~--g~~~~--t~~~~~~~~~---------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 112 ALRVTDGALVVVDCVE--GVCVQ--TETVLRQALQ---------ERIRPVLFINKVDRA 157 (836)
T ss_pred HHhcCCeEEEEEECCC--CcCcc--HHHHHHHHHH---------cCCCEEEEEEChhhh
Confidence 5677999999999988 43333 2344454443 345889999999997
No 488
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.57 E-value=0.0048 Score=60.10 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.++.++|.+|||||||+.+++...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~ 25 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA 25 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998643
No 489
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.57 E-value=0.0013 Score=70.08 Aligned_cols=59 Identities=32% Similarity=0.290 Sum_probs=37.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~ 463 (666)
..|.+||++|+|||||||+|++.......+ ---|+|...-...++ ..+.+.||-||...
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~dr------LFATLDpT~h~a~Lpsg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDR------LFATLDPTLHSAHLPSGNFVLLTDTVGFISD 239 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccch------hheeccchhhhccCCCCcEEEEeechhhhhh
Confidence 478999999999999999999544332211 112333222222233 34678899999843
No 490
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.51 E-value=0.0025 Score=76.18 Aligned_cols=117 Identities=19% Similarity=0.148 Sum_probs=65.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecc----c------ccCCCCceeEEEEEeeEe-----CCceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKL----T------EAPIPGTTLGILRIGGIL-----PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~----t------~S~~PGTT~~~~~~~~~l-----~~~~~liDTPGi~~~ 463 (666)
.+|+++|..++|||||+.+|+...+...... + .-...|+|.+...+...+ +..+.++||||....
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 5899999999999999999987554322100 0 001223444332221112 235789999999763
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
. .........++...+.|++..++..+....+........+. +.+.||++..
T Consensus 101 ~----------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~---iv~iNK~D~~ 152 (731)
T PRK07560 101 G----------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP---VLFINKVDRL 152 (731)
T ss_pred H----------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe---EEEEECchhh
Confidence 1 12234457778888999877665544333333221122233 2346777754
No 491
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=96.50 E-value=0.0041 Score=65.25 Aligned_cols=160 Identities=19% Similarity=0.095 Sum_probs=86.6
Q ss_pred eeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccc-eecceecccc-----cccccCchhHHHHH
Q 005972 206 AGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSL-RNYGQVKNEV-----AENLIPDFDFDRVI 278 (666)
Q Consensus 206 a~vGrpNvg-~slLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rL-r~ygkv~~~~-----~~~~iP~~d~~~~L 278 (666)
+.+|+-||| ++|||-+...|+..-..|. +...+-|..|+.. .+|-.+.... +.+..|. ++.++-
T Consensus 140 ~~~g~SNVGKSSLln~~~r~k~~~~t~k~--------K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~-d~~~~t 210 (320)
T KOG2486|consen 140 AFYGRSNVGKSSLLNDLVRVKNIADTSKS--------KNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPA-DWDKFT 210 (320)
T ss_pred eeecCCcccHHHHHhhhhhhhhhhhhcCC--------CCccceeeeeeeccceEEEEecCCcccccCCccCcc-hHhHhH
Confidence 558999999 6688999998866444332 3345556666644 3343332222 2222222 233322
Q ss_pred HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC--C---hHH
Q 005972 279 ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV--S---PTR 353 (666)
Q Consensus 279 ~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~--~---~~~ 353 (666)
...+.. -.+---++++||+.-+.- ..+...++++.+ .+.|..+|+||+|...+.. . ...
T Consensus 211 ~~Y~le---R~nLv~~FLLvd~sv~i~----~~D~~~i~~~ge---------~~VP~t~vfTK~DK~k~~~~~~kKp~~~ 274 (320)
T KOG2486|consen 211 KSYLLE---RENLVRVFLLVDASVPIQ----PTDNPEIAWLGE---------NNVPMTSVFTKCDKQKKVKRTGKKPGLN 274 (320)
T ss_pred HHHHHh---hhhhheeeeeeeccCCCC----CCChHHHHHHhh---------cCCCeEEeeehhhhhhhccccccCcccc
Confidence 221111 012224678888876432 234455677776 3468999999999874322 0 011
Q ss_pred HHHHHHHHHHhCCCCCcce---EEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNG---VYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~---V~~VSAkkg~GveeLl~~I~~~ 394 (666)
++..+. .++.--+.. -+.+|+.++.|++.|+=.|.+.
T Consensus 275 i~~~f~----~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 275 IKINFQ----GLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeehh----hccccceeccCCceeeecccccCceeeeeehhhh
Confidence 111111 111000111 2359999999999998777664
No 492
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.48 E-value=0.0063 Score=66.07 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=37.8
Q ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHHhCCC--CCc-ceEEEEecccCcChhhHHHHHHhhcC
Q 005972 336 VLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA--PKL-NGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 336 ILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~--~~~-~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
|+|+||+|+++.... ......++........ +.. ..|+++||+++.|+++|++.|.++++
T Consensus 198 IiVVNKaDl~~~~~a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 198 LIVINKADGDNKTAA-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred eEEeehhcccchhHH-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999875531 1122222222111110 001 24999999999999999999988644
No 493
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.45 E-value=0.0061 Score=60.05 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=20.7
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+|+++|.+|||||||+++++...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~ 24 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGY 24 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998654
No 494
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.016 Score=64.34 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=62.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++...|..++|||+.+ |..++..+-. ..|+-+ +.+..++|+||+|+..... ++...++....+.
T Consensus 70 g~~~~d~alLvV~~de--Gl~~qtgEhL--~iLdll--------gi~~giivltk~D~~d~~r----~e~~i~~Il~~l~ 133 (447)
T COG3276 70 GLGGIDYALLVVAADE--GLMAQTGEHL--LILDLL--------GIKNGIIVLTKADRVDEAR----IEQKIKQILADLS 133 (447)
T ss_pred hhcCCceEEEEEeCcc--CcchhhHHHH--HHHHhc--------CCCceEEEEeccccccHHH----HHHHHHHHHhhcc
Confidence 4567899999999976 5455443222 233333 3456799999999986543 4444444443333
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+. -..++.+|+++|.|+++|.++|.+++
T Consensus 134 l~-~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 LA-NAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cc-cccccccccccCCCHHHHHHHHHHhh
Confidence 22 34589999999999999999998876
No 495
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.44 E-value=0.0039 Score=63.44 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.9
Q ss_pred cEEEEeecCCChhhHHHhhhcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+|+++|.+|||||||+++++..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~ 23 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG 23 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999754
No 496
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.43 E-value=0.0053 Score=62.76 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=43.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|+++|.+|||||||+++++...... ..|-+..+...... -.-.+.|+||||-.....+. ..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-------~~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~l~----------~~ 63 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-------TVSTVGGAFYLKQW-GPYNISIWDTAGREQFHGLG----------SM 63 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-------CCCccceEEEEEEe-eEEEEEEEeCCCcccchhhH----------HH
Confidence 68999999999999999998654221 11111112111110 11257899999975432211 12
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...++++...
T Consensus 64 ~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 64 YCRGAAAVILTYDVSN 79 (220)
T ss_pred HhccCCEEEEEEECCC
Confidence 2445566666665443
No 497
>PTZ00416 elongation factor 2; Provisional
Probab=96.41 E-value=0.0035 Score=75.88 Aligned_cols=118 Identities=21% Similarity=0.131 Sum_probs=69.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeec----------ccccCCCCceeEEEEEeeEeC-----------CceEEEE
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSK----------LTEAPIPGTTLGILRIGGILP-----------AKAKLYD 456 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~----------~t~S~~PGTT~~~~~~~~~l~-----------~~~~liD 456 (666)
-.+|+++|..++|||||+++|+...+..... ...-...|+|.+...+...+. ..+.++|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 3589999999999999999999765432110 000112233333211111121 2478999
Q ss_pred CCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 457 TPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 457 TPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
|||...... .+....+..+...+.+++..++..+....+..+.....++ +.+.|+++..
T Consensus 99 tPG~~~f~~----------~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~---iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFSS----------EVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRP---VLFINKVDRA 157 (836)
T ss_pred CCCHHhHHH----------HHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCE---EEEEEChhhh
Confidence 999965211 1234567788889999987776666544444444333343 2345777765
No 498
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.39 E-value=0.0078 Score=59.11 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+++++...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~ 25 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC 25 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 478999999999999999998653
No 499
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.024 Score=57.21 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=58.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....|.-|++|.|+.+-.. -+.+..|++... +......+++||.||+|+-.+ ....++-+ .++.++
T Consensus 81 YyrgA~gi~LvyDitne~S------feni~~W~~~I~---e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge----~lA~e~ 147 (207)
T KOG0078|consen 81 YYRGAMGILLVYDITNEKS------FENIRNWIKNID---EHASDDVVKILVGNKCDLEEKRQVSKERGE----ALAREY 147 (207)
T ss_pred HHhhcCeeEEEEEccchHH------HHHHHHHHHHHH---hhCCCCCcEEEeeccccccccccccHHHHH----HHHHHh
Confidence 3456889999999987322 122333443321 111135689999999999863 33333333 345677
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
|.+ .+-+||+.|.++++....|..
T Consensus 148 G~~----F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 148 GIK----FFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred CCe----EEEccccCCCCHHHHHHHHHH
Confidence 864 788999999999987766654
No 500
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.36 E-value=0.0081 Score=60.47 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=38.2
Q ss_pred EEEEECCCCCCC-CCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 336 VLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 336 ILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
++|+||+|+.+. ......+..+++.+ .. ...++.+||++|.|+++|.++|.++
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~--~~----~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKM--RG----EKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHh--CC----CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 789999999853 22333445554333 11 2459999999999999999999875
Done!