Query 005972
Match_columns 666
No_of_seqs 498 out of 3467
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ec1_A YQEH GTPase; atnos1, at 100.0 8.4E-59 2.9E-63 502.2 28.0 334 245-616 36-369 (369)
2 3h2y_A GTPase family protein; 100.0 5.5E-58 1.9E-62 495.7 26.3 334 245-616 34-368 (368)
3 2hjg_A GTP-binding protein ENG 99.9 2.8E-26 9.6E-31 252.5 11.2 276 203-528 4-299 (436)
4 1mky_A Probable GTP-binding pr 99.9 2.3E-25 7.8E-30 245.5 12.3 274 205-528 4-305 (439)
5 4dcu_A GTP-binding protein ENG 99.9 2.1E-24 7E-29 238.9 12.1 292 202-543 23-337 (456)
6 1puj_A YLQF, conserved hypothe 99.9 5.6E-22 1.9E-26 206.9 14.0 153 280-465 15-180 (282)
7 3cnl_A YLQF, putative uncharac 99.8 2E-20 6.9E-25 193.1 6.0 142 287-465 18-159 (262)
8 1t9h_A YLOQ, probable GTPase E 99.6 6.2E-17 2.1E-21 170.8 6.2 155 287-465 83-239 (307)
9 2yv5_A YJEQ protein; hydrolase 99.6 1E-15 3.5E-20 160.8 13.4 154 287-465 76-231 (302)
10 2rcn_A Probable GTPase ENGC; Y 99.6 6.9E-15 2.3E-19 158.1 11.6 152 287-465 127-283 (358)
11 1u0l_A Probable GTPase ENGC; p 99.6 7.7E-15 2.6E-19 153.9 11.1 154 287-465 81-236 (301)
12 3iev_A GTP-binding protein ERA 99.5 3.7E-14 1.3E-18 149.1 6.3 160 201-398 10-183 (308)
13 1wf3_A GTP-binding protein; GT 99.4 2.6E-13 8.8E-18 142.5 4.6 157 202-397 8-173 (301)
14 1ega_A Protein (GTP-binding pr 99.4 3.8E-13 1.3E-17 141.0 5.5 158 203-398 9-176 (301)
15 1x3s_A RAS-related protein RAB 99.2 3.9E-12 1.3E-16 121.5 5.5 110 288-413 85-194 (195)
16 1svi_A GTP-binding protein YSX 99.1 3.6E-10 1.2E-14 108.2 13.4 90 289-395 104-193 (195)
17 4dhe_A Probable GTP-binding pr 99.1 6.7E-11 2.3E-15 116.1 6.2 97 288-397 113-211 (223)
18 3pqc_A Probable GTP-binding pr 99.1 8.8E-10 3E-14 104.9 12.7 92 288-396 102-193 (195)
19 2hjg_A GTP-binding protein ENG 99.1 4.5E-10 1.5E-14 123.4 11.2 94 287-395 254-347 (436)
20 3t5g_A GTP-binding protein RHE 99.0 1.8E-10 6.2E-15 109.0 6.7 106 287-413 74-180 (181)
21 2dyk_A GTP-binding protein; GT 99.0 3.2E-10 1.1E-14 104.6 8.0 85 287-395 76-160 (161)
22 3q72_A GTP-binding protein RAD 99.0 7.4E-10 2.5E-14 102.8 9.8 157 203-394 3-161 (166)
23 2qu8_A Putative nucleolar GTP- 99.0 7.7E-10 2.6E-14 109.8 10.4 96 289-394 107-202 (228)
24 3gee_A MNME, tRNA modification 99.0 7.6E-10 2.6E-14 123.3 10.8 157 201-396 232-397 (476)
25 3tkl_A RAS-related protein RAB 99.0 1.2E-09 4.1E-14 104.4 10.2 90 288-394 86-176 (196)
26 1ek0_A Protein (GTP-binding pr 99.0 8.6E-10 2.9E-14 102.2 8.4 96 288-396 73-168 (170)
27 1mky_A Probable GTP-binding pr 99.0 3E-10 1E-14 124.8 6.1 113 287-422 260-372 (439)
28 1zd9_A ADP-ribosylation factor 99.0 3.9E-09 1.4E-13 101.1 12.7 97 288-396 88-184 (188)
29 4dcu_A GTP-binding protein ENG 99.0 1.2E-09 4.2E-14 120.6 9.8 93 287-395 274-367 (456)
30 3i8s_A Ferrous iron transport 98.9 4.1E-10 1.4E-14 116.2 5.5 86 289-397 84-169 (274)
31 3iev_A GTP-binding protein ERA 98.9 6.2E-10 2.1E-14 116.9 6.8 139 397-544 9-153 (308)
32 2efe_B Small GTP-binding prote 98.9 3.4E-09 1.1E-13 99.8 11.2 92 288-396 82-174 (181)
33 1z0j_A RAB-22, RAS-related pro 98.9 2.6E-09 8.7E-14 99.2 10.1 92 288-396 76-168 (170)
34 3iby_A Ferrous iron transport 98.9 5.7E-10 1.9E-14 114.3 6.1 147 205-394 4-164 (256)
35 1r8s_A ADP-ribosylation factor 98.9 9E-09 3.1E-13 95.3 13.4 98 287-396 64-161 (164)
36 2nzj_A GTP-binding protein REM 98.9 1.8E-09 6.1E-14 101.0 8.5 91 288-394 75-166 (175)
37 1g16_A RAS-related protein SEC 98.9 2E-09 6.7E-14 100.0 8.7 91 288-395 73-163 (170)
38 2g6b_A RAS-related protein RAB 98.9 5.2E-09 1.8E-13 98.4 11.6 92 287-395 80-172 (180)
39 4dsu_A GTPase KRAS, isoform 2B 98.9 3.3E-09 1.1E-13 100.4 10.2 91 288-394 73-163 (189)
40 1r2q_A RAS-related protein RAB 98.9 3.4E-09 1.2E-13 98.1 9.8 92 288-396 76-168 (170)
41 2gj8_A MNME, tRNA modification 98.9 3.9E-10 1.3E-14 107.3 3.2 86 287-396 80-165 (172)
42 3cph_A RAS-related protein SEC 98.9 3.7E-09 1.3E-13 102.5 10.0 91 287-394 89-179 (213)
43 1z0f_A RAB14, member RAS oncog 98.9 4.3E-09 1.5E-13 98.5 10.0 91 287-394 84-175 (179)
44 3q85_A GTP-binding protein REM 98.9 3.6E-09 1.2E-13 98.4 9.4 91 288-394 73-164 (169)
45 1upt_A ARL1, ADP-ribosylation 98.9 9.5E-09 3.2E-13 95.6 12.1 96 287-395 71-167 (171)
46 4bas_A ADP-ribosylation factor 98.9 1.4E-09 4.6E-14 104.3 6.3 164 200-394 15-186 (199)
47 1kao_A RAP2A; GTP-binding prot 98.9 3.2E-09 1.1E-13 97.8 8.6 91 288-394 72-163 (167)
48 3dz8_A RAS-related protein RAB 98.9 6E-09 2.1E-13 99.9 10.8 91 287-394 92-183 (191)
49 3t1o_A Gliding protein MGLA; G 98.9 5.9E-09 2E-13 99.2 10.6 96 287-394 94-189 (198)
50 1lnz_A SPO0B-associated GTP-bi 98.9 9.5E-10 3.2E-14 117.6 5.4 97 287-396 233-329 (342)
51 1zbd_A Rabphilin-3A; G protein 98.9 7.4E-09 2.5E-13 99.9 11.2 91 287-394 77-168 (203)
52 3lvq_E ARF-GAP with SH3 domain 98.9 5.4E-09 1.8E-13 116.2 11.0 155 201-396 321-483 (497)
53 2fg5_A RAB-22B, RAS-related pr 98.9 6.6E-09 2.3E-13 99.9 10.2 92 288-396 93-185 (192)
54 2gf0_A GTP-binding protein DI- 98.9 9.9E-09 3.4E-13 98.2 11.2 95 288-397 77-171 (199)
55 2hup_A RAS-related protein RAB 98.9 1.4E-08 4.9E-13 98.7 12.3 160 202-394 29-190 (201)
56 1c1y_A RAS-related protein RAP 98.9 6.5E-09 2.2E-13 96.1 9.4 92 288-394 72-164 (167)
57 3con_A GTPase NRAS; structural 98.9 1.7E-08 6E-13 96.1 12.5 92 287-394 89-180 (190)
58 2hxs_A RAB-26, RAS-related pro 98.8 1.6E-08 5.5E-13 94.8 12.1 95 288-396 77-172 (178)
59 1xzp_A Probable tRNA modificat 98.8 3.3E-09 1.1E-13 118.4 8.5 83 287-394 320-402 (482)
60 3izq_1 HBS1P, elongation facto 98.8 5E-09 1.7E-13 120.1 10.1 172 200-387 165-362 (611)
61 1ksh_A ARF-like protein 2; sma 98.8 4.4E-09 1.5E-13 100.0 8.0 100 287-398 82-181 (186)
62 1z08_A RAS-related protein RAB 98.8 5.5E-09 1.9E-13 97.1 8.5 92 287-395 75-167 (170)
63 2ce2_X GTPase HRAS; signaling 98.8 1.4E-08 4.7E-13 93.2 11.1 92 288-395 72-163 (166)
64 3clv_A RAB5 protein, putative; 98.8 1.7E-08 5.8E-13 96.0 12.0 88 288-394 114-201 (208)
65 2wji_A Ferrous iron transport 98.8 4.8E-09 1.6E-13 98.5 8.1 84 289-395 80-163 (165)
66 4a9a_A Ribosome-interacting GT 98.8 2.5E-09 8.7E-14 115.6 7.0 88 399-495 73-161 (376)
67 2b6h_A ADP-ribosylation factor 98.8 1.4E-08 4.8E-13 98.0 11.5 96 288-395 94-189 (192)
68 3kkq_A RAS-related protein M-R 98.8 1.1E-08 3.8E-13 96.7 10.4 91 288-394 87-179 (183)
69 1zj6_A ADP-ribosylation factor 98.8 2.3E-08 7.8E-13 95.4 12.6 97 288-396 81-177 (187)
70 1f6b_A SAR1; gtpases, N-termin 98.8 3.2E-09 1.1E-13 103.2 6.7 99 287-394 89-196 (198)
71 3tw8_B RAS-related protein RAB 98.8 5E-09 1.7E-13 98.2 7.8 90 287-394 78-168 (181)
72 3o47_A ADP-ribosylation factor 98.8 1.2E-08 4.2E-13 108.0 11.6 158 202-396 165-326 (329)
73 2fu5_C RAS-related protein RAB 98.8 7.7E-09 2.6E-13 97.8 9.0 91 287-394 77-168 (183)
74 1fzq_A ADP-ribosylation factor 98.8 2.3E-08 7.9E-13 95.5 12.4 98 287-396 80-177 (181)
75 2oil_A CATX-8, RAS-related pro 98.8 4.6E-09 1.6E-13 100.6 7.5 90 288-394 95-185 (193)
76 2erx_A GTP-binding protein DI- 98.8 8.3E-09 2.8E-13 95.7 8.9 95 288-397 72-167 (172)
77 1u8z_A RAS-related protein RAL 98.8 8.6E-09 2.9E-13 95.0 9.0 91 288-394 73-164 (168)
78 3j2k_7 ERF3, eukaryotic polype 98.8 1.6E-08 5.6E-13 111.3 12.7 173 201-389 16-217 (439)
79 3reg_A RHO-like small GTPase; 98.8 6.9E-09 2.3E-13 99.6 8.5 93 287-395 91-186 (194)
80 3bc1_A RAS-related protein RAB 98.8 1.3E-08 4.4E-13 96.4 10.2 92 287-394 90-182 (195)
81 2y8e_A RAB-protein 6, GH09086P 98.8 6.4E-09 2.2E-13 97.3 7.9 92 288-396 84-176 (179)
82 2bcg_Y Protein YP2, GTP-bindin 98.8 1.2E-08 4.1E-13 98.9 10.0 92 287-395 77-169 (206)
83 2gf9_A RAS-related protein RAB 98.8 5.4E-09 1.8E-13 100.0 7.4 91 287-394 91-182 (189)
84 2fn4_A P23, RAS-related protei 98.8 6.6E-09 2.3E-13 97.4 7.9 91 288-394 78-169 (181)
85 1wf3_A GTP-binding protein; GT 98.8 3.4E-09 1.2E-13 111.1 6.4 119 399-528 8-130 (301)
86 3b1v_A Ferrous iron uptake tra 98.8 3E-09 1E-13 110.0 5.9 84 289-395 79-162 (272)
87 2e87_A Hypothetical protein PH 98.8 4.5E-10 1.5E-14 120.1 -0.5 146 333-494 89-257 (357)
88 2p5s_A RAS and EF-hand domain 98.8 9E-09 3.1E-13 99.5 8.8 91 288-395 98-195 (199)
89 2h17_A ADP-ribosylation factor 98.8 1.9E-08 6.4E-13 95.6 10.7 95 287-393 85-179 (181)
90 1wms_A RAB-9, RAB9, RAS-relate 98.8 5.3E-08 1.8E-12 91.2 13.5 96 287-394 76-171 (177)
91 4djt_A GTP-binding nuclear pro 98.8 4.9E-09 1.7E-13 102.6 6.6 92 288-396 82-174 (218)
92 2il1_A RAB12; G-protein, GDP, 98.8 1.1E-08 3.7E-13 98.5 8.9 92 287-394 95-187 (192)
93 2bme_A RAB4A, RAS-related prot 98.8 2E-08 6.9E-13 95.0 10.6 91 287-394 79-170 (186)
94 2a5j_A RAS-related protein RAB 98.8 6.4E-09 2.2E-13 99.7 7.1 90 288-394 91-181 (191)
95 3a1s_A Iron(II) transport prot 98.8 5.5E-09 1.9E-13 107.0 7.0 84 289-395 82-165 (258)
96 2a9k_A RAS-related protein RAL 98.8 1.6E-08 5.4E-13 95.3 9.6 91 288-394 87-178 (187)
97 3mca_A HBS1, elongation factor 98.8 2.1E-09 7.1E-14 122.8 4.0 100 287-396 275-396 (592)
98 1m2o_B GTP-binding protein SAR 98.8 3.1E-09 1E-13 102.5 4.5 95 287-394 87-189 (190)
99 2yc2_C IFT27, small RAB-relate 98.8 1.9E-08 6.4E-13 96.8 10.0 160 202-394 20-189 (208)
100 2ew1_A RAS-related protein RAB 98.8 1.3E-08 4.6E-13 99.5 9.1 91 287-394 95-186 (201)
101 1mh1_A RAC1; GTP-binding, GTPa 98.8 1.2E-08 4E-13 96.3 8.2 94 287-396 73-179 (186)
102 1z06_A RAS-related protein RAB 98.8 1.9E-08 6.4E-13 96.2 9.6 92 288-395 91-186 (189)
103 2o52_A RAS-related protein RAB 98.8 1.7E-08 5.8E-13 97.9 9.1 91 287-394 94-185 (200)
104 2qtf_A Protein HFLX, GTP-bindi 98.8 2.5E-08 8.5E-13 107.4 11.2 99 287-395 254-352 (364)
105 2f7s_A C25KG, RAS-related prot 98.7 5.1E-08 1.7E-12 95.2 12.3 92 287-394 104-196 (217)
106 1vg8_A RAS-related protein RAB 98.7 2.4E-08 8.2E-13 96.3 9.7 96 287-394 77-172 (207)
107 2bov_A RAla, RAS-related prote 98.7 3.8E-08 1.3E-12 94.7 10.8 91 288-394 83-174 (206)
108 3bwd_D RAC-like GTP-binding pr 98.7 6.6E-09 2.2E-13 97.9 5.3 92 287-394 76-178 (182)
109 3geh_A MNME, tRNA modification 98.7 8.8E-09 3E-13 114.3 7.1 152 201-396 223-383 (462)
110 2h57_A ADP-ribosylation factor 98.7 7.2E-08 2.5E-12 92.1 12.7 99 287-395 87-185 (190)
111 4gzl_A RAS-related C3 botulinu 98.7 9.9E-09 3.4E-13 100.1 6.7 92 287-394 98-202 (204)
112 1z2a_A RAS-related protein RAB 98.7 1.2E-08 3.9E-13 94.5 6.8 89 288-394 75-164 (168)
113 1wxq_A GTP-binding protein; st 98.7 6.1E-09 2.1E-13 113.4 5.5 57 333-398 215-272 (397)
114 2gco_A H9, RHO-related GTP-bin 98.7 3.3E-08 1.1E-12 95.8 10.1 92 287-394 93-197 (201)
115 2j1l_A RHO-related GTP-binding 98.7 1.3E-08 4.6E-13 99.9 7.3 92 287-394 102-206 (214)
116 2x77_A ADP-ribosylation factor 98.7 1.6E-08 5.4E-13 96.5 7.5 97 287-395 86-182 (189)
117 2g3y_A GTP-binding protein GEM 98.7 2.7E-08 9.3E-13 98.8 9.5 91 288-394 109-200 (211)
118 1moz_A ARL1, ADP-ribosylation 98.7 2.4E-08 8.1E-13 94.3 8.6 96 287-395 82-178 (183)
119 2fv8_A H6, RHO-related GTP-bin 98.7 1.6E-08 5.5E-13 98.5 7.3 92 287-394 93-197 (207)
120 3cpj_B GTP-binding protein YPT 98.7 9.2E-09 3.1E-13 101.5 5.6 93 287-396 82-175 (223)
121 2q3h_A RAS homolog gene family 98.7 1.2E-08 4E-13 98.4 6.1 92 287-394 88-192 (201)
122 2fh5_B SR-beta, signal recogni 98.7 2.5E-07 8.6E-12 90.0 15.5 101 288-394 76-213 (214)
123 2atx_A Small GTP binding prote 98.7 3.4E-08 1.1E-12 94.6 8.8 92 287-394 86-190 (194)
124 3oes_A GTPase rhebl1; small GT 98.7 8.3E-09 2.9E-13 99.9 4.6 92 287-394 92-184 (201)
125 3cbq_A GTP-binding protein REM 98.7 4.1E-08 1.4E-12 95.2 9.3 92 288-395 94-186 (195)
126 2iwr_A Centaurin gamma 1; ANK 98.7 2.8E-07 9.7E-12 86.6 14.7 93 289-394 71-166 (178)
127 3lxw_A GTPase IMAP family memb 98.7 6.6E-08 2.3E-12 98.1 10.4 166 201-396 20-207 (247)
128 3sjy_A Translation initiation 98.7 1.8E-07 6E-12 101.7 14.4 109 270-397 83-192 (403)
129 2atv_A RERG, RAS-like estrogen 98.7 5.8E-08 2E-12 93.4 9.4 91 288-394 96-188 (196)
130 3tr5_A RF-3, peptide chain rel 98.7 1.3E-07 4.5E-12 106.5 13.6 27 372-398 252-278 (528)
131 2e87_A Hypothetical protein PH 98.6 1.3E-07 4.4E-12 101.0 12.8 90 289-395 245-334 (357)
132 2cjw_A GTP-binding protein GEM 98.6 3.9E-08 1.3E-12 95.2 7.9 91 288-394 78-169 (192)
133 2lkc_A Translation initiation 98.6 3.9E-08 1.3E-12 92.2 7.6 89 287-394 75-168 (178)
134 1jwy_B Dynamin A GTPase domain 98.6 1.9E-08 6.5E-13 104.5 6.0 105 277-398 156-263 (315)
135 3q3j_B RHO-related GTP-binding 98.6 3.6E-08 1.2E-12 97.0 7.7 92 287-394 95-200 (214)
136 3gj0_A GTP-binding nuclear pro 98.6 1.9E-08 6.6E-13 98.8 5.7 89 288-395 85-173 (221)
137 2wjg_A FEOB, ferrous iron tran 98.6 1.7E-08 5.9E-13 95.8 5.2 87 289-398 84-170 (188)
138 3k53_A Ferrous iron transport 98.6 2.2E-08 7.4E-13 102.7 6.3 85 289-395 80-164 (271)
139 3p26_A Elongation factor 1 alp 98.6 1.1E-07 3.8E-12 105.8 11.9 103 270-387 119-228 (483)
140 3qq5_A Small GTP-binding prote 98.6 9.4E-09 3.2E-13 112.9 2.9 156 203-396 35-195 (423)
141 2cxx_A Probable GTP-binding pr 98.6 8.4E-08 2.9E-12 90.9 9.1 58 331-395 121-182 (190)
142 4dhe_A Probable GTP-binding pr 98.6 2.6E-08 9E-13 97.5 5.7 123 398-528 29-157 (223)
143 1wb1_A Translation elongation 98.6 1.3E-07 4.5E-12 105.3 11.8 164 201-395 18-187 (482)
144 3cb4_D GTP-binding protein LEP 98.6 1E-07 3.5E-12 108.9 11.1 127 270-421 79-216 (599)
145 2c78_A Elongation factor TU-A; 98.6 1.2E-07 4.2E-12 102.9 11.1 109 270-397 83-212 (405)
146 3l0i_B RAS-related protein RAB 98.6 2E-09 6.8E-14 104.2 -3.0 93 287-396 102-195 (199)
147 2zej_A Dardarin, leucine-rich 98.6 4.5E-08 1.6E-12 93.5 6.4 99 288-395 77-176 (184)
148 1svi_A GTP-binding protein YSX 98.6 4.2E-08 1.4E-12 93.7 5.7 121 398-528 23-147 (195)
149 3th5_A RAS-related C3 botulinu 98.0 6.5E-09 2.2E-13 100.7 0.0 95 287-393 98-201 (204)
150 3lxw_A GTPase IMAP family memb 98.6 8.9E-08 3E-12 97.1 8.1 106 398-508 21-129 (247)
151 2j0v_A RAC-like GTP-binding pr 98.6 3.5E-08 1.2E-12 96.0 4.9 93 287-395 77-178 (212)
152 1ky3_A GTP-binding protein YPT 98.6 2.1E-07 7.2E-12 87.1 9.9 96 287-394 78-175 (182)
153 1f60_A Elongation factor EEF1A 98.6 3.1E-07 1.1E-11 101.6 12.7 91 287-388 105-203 (458)
154 1m7b_A RND3/RHOE small GTP-bin 98.5 7.2E-08 2.5E-12 91.8 6.5 92 287-394 75-180 (184)
155 2xtp_A GTPase IMAP family memb 98.5 1.4E-07 4.9E-12 95.4 9.1 163 202-396 22-207 (260)
156 3c5c_A RAS-like protein 12; GD 98.5 3.3E-07 1.1E-11 87.9 10.9 93 288-394 89-183 (187)
157 1xzp_A Probable tRNA modificat 98.5 3E-08 1E-12 110.6 3.8 118 398-527 243-362 (482)
158 3i8s_A Ferrous iron transport 98.5 1.9E-07 6.5E-12 96.2 9.6 92 398-495 3-97 (274)
159 1zun_B Sulfate adenylate trans 98.5 4.1E-07 1.4E-11 99.8 12.7 99 270-386 112-213 (434)
160 3ihw_A Centg3; RAS, centaurin, 98.5 2E-06 6.8E-11 82.4 15.7 91 289-394 84-177 (184)
161 3llu_A RAS-related GTP-binding 98.5 1.7E-07 5.8E-12 90.4 8.2 98 288-394 93-194 (196)
162 1gwn_A RHO-related GTP-binding 98.5 9.4E-08 3.2E-12 93.6 6.4 92 287-394 96-201 (205)
163 3dpu_A RAB family protein; roc 98.5 1E-07 3.4E-12 107.3 7.4 89 288-397 119-208 (535)
164 1s0u_A EIF-2-gamma, translatio 98.5 8.2E-07 2.8E-11 96.5 14.3 97 287-396 101-197 (408)
165 3iby_A Ferrous iron transport 98.5 2.3E-07 7.8E-12 94.9 9.2 90 400-495 3-95 (256)
166 3pqc_A Probable GTP-binding pr 98.5 1.1E-07 3.9E-12 90.2 6.5 120 398-528 23-146 (195)
167 4dkx_A RAS-related protein RAB 98.5 4.6E-07 1.6E-11 90.3 11.1 91 288-395 83-174 (216)
168 1kk1_A EIF2gamma; initiation o 98.5 3.8E-07 1.3E-11 99.2 11.1 98 287-397 103-200 (410)
169 2wkq_A NPH1-1, RAS-related C3 98.5 1.9E-07 6.4E-12 96.8 7.9 92 287-394 223-327 (332)
170 1pui_A ENGB, probable GTP-bind 98.5 6.3E-07 2.2E-11 86.7 11.0 93 289-397 107-199 (210)
171 1ega_A Protein (GTP-binding pr 98.5 1.8E-08 6.2E-13 105.4 -0.1 115 399-528 9-129 (301)
172 1d2e_A Elongation factor TU (E 98.5 9.2E-07 3.2E-11 95.9 13.2 109 270-397 74-195 (397)
173 3t5d_A Septin-7; GTP-binding p 98.5 1.5E-07 5E-12 96.7 6.5 89 290-396 115-203 (274)
174 2ywe_A GTP-binding protein LEP 98.5 8.8E-07 3E-11 101.2 13.5 103 270-397 81-184 (600)
175 3r7w_A Gtpase1, GTP-binding pr 98.5 1.5E-07 5.1E-12 98.6 6.6 98 287-393 77-177 (307)
176 1jny_A EF-1-alpha, elongation 98.4 9.4E-07 3.2E-11 97.0 12.4 102 270-387 92-203 (435)
177 2gj8_A MNME, tRNA modification 98.4 2.2E-07 7.4E-12 88.1 6.0 61 398-463 4-65 (172)
178 3gee_A MNME, tRNA modification 98.4 7.9E-08 2.7E-12 107.0 3.3 95 398-499 233-328 (476)
179 3def_A T7I23.11 protein; chlor 98.4 3.5E-07 1.2E-11 93.3 7.4 76 385-465 23-99 (262)
180 1h65_A Chloroplast outer envel 98.4 3.2E-07 1.1E-11 93.9 7.1 62 398-464 39-101 (270)
181 3lxx_A GTPase IMAP family memb 98.4 9.4E-07 3.2E-11 88.3 10.3 166 202-395 29-212 (239)
182 2aka_B Dynamin-1; fusion prote 98.4 3.4E-07 1.2E-11 94.0 7.1 89 289-393 160-249 (299)
183 3lxx_A GTPase IMAP family memb 98.4 3.9E-07 1.3E-11 91.1 6.7 61 399-465 30-93 (239)
184 2dyk_A GTP-binding protein; GT 98.4 2.6E-07 8.8E-12 84.9 5.0 117 400-528 3-121 (161)
185 1wxq_A GTP-binding protein; st 98.4 1.5E-07 5.2E-12 102.4 3.7 91 400-499 2-117 (397)
186 3zvr_A Dynamin-1; hydrolase, D 98.3 4.7E-07 1.6E-11 105.8 7.4 88 289-393 186-274 (772)
187 2xtp_A GTPase IMAP family memb 98.3 6.1E-07 2.1E-11 90.7 7.3 93 398-495 22-117 (260)
188 2aka_B Dynamin-1; fusion prote 98.3 1.5E-06 5.1E-11 89.2 9.9 26 399-424 27-52 (299)
189 3t5d_A Septin-7; GTP-binding p 98.3 5.9E-07 2E-11 92.2 6.8 65 399-463 9-78 (274)
190 1f5n_A Interferon-induced guan 98.3 2.6E-07 9E-12 105.2 4.5 73 386-465 26-106 (592)
191 2ohf_A Protein OLA1, GTP-bindi 98.3 4.5E-07 1.5E-11 98.6 6.1 90 396-494 20-127 (396)
192 1jal_A YCHF protein; nucleotid 98.3 3.5E-07 1.2E-11 98.5 4.9 88 399-495 3-108 (363)
193 3avx_A Elongation factor TS, e 98.3 5E-06 1.7E-10 100.5 15.2 99 287-397 379-486 (1289)
194 3a1s_A Iron(II) transport prot 98.3 1.7E-06 5.7E-11 88.5 9.7 87 399-495 6-95 (258)
195 2elf_A Protein translation elo 98.3 1.5E-06 5E-11 93.8 9.5 104 270-396 68-179 (370)
196 2j69_A Bacterial dynamin-like 98.3 8.5E-07 2.9E-11 103.1 8.2 97 287-395 197-323 (695)
197 4a9a_A Ribosome-interacting GT 98.3 2.3E-07 7.7E-12 100.4 3.1 112 205-344 75-194 (376)
198 3geh_A MNME, tRNA modification 98.3 1.1E-07 3.8E-12 105.4 0.7 93 398-497 224-317 (462)
199 3izy_P Translation initiation 98.3 4.4E-07 1.5E-11 102.4 4.7 93 287-395 72-166 (537)
200 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 8.9E-07 3.1E-11 96.2 6.7 89 397-493 19-125 (392)
201 3qq5_A Small GTP-binding prote 98.2 5.1E-07 1.8E-11 99.1 4.8 121 398-531 34-156 (423)
202 1udx_A The GTP-binding protein 98.2 6E-07 2E-11 98.4 5.2 91 288-395 233-323 (416)
203 1jwy_B Dynamin A GTPase domain 98.2 1.1E-06 3.9E-11 91.0 7.0 25 399-423 25-49 (315)
204 2www_A Methylmalonic aciduria 98.2 1.7E-07 5.7E-12 100.2 0.7 90 288-395 185-277 (349)
205 1g7s_A Translation initiation 98.2 7.1E-07 2.4E-11 101.9 5.9 95 287-395 90-216 (594)
206 2xex_A Elongation factor G; GT 98.2 3.8E-06 1.3E-10 97.6 12.0 27 372-398 255-281 (693)
207 2j69_A Bacterial dynamin-like 98.2 1E-06 3.6E-11 102.3 7.2 130 384-528 55-243 (695)
208 2x2e_A Dynamin-1; nitration, h 98.2 6.7E-07 2.3E-11 95.3 4.6 89 289-393 166-254 (353)
209 3k53_A Ferrous iron transport 98.2 1.8E-06 6.1E-11 88.3 7.4 87 399-495 4-93 (271)
210 2x2e_A Dynamin-1; nitration, h 98.2 7.9E-07 2.7E-11 94.8 4.8 26 399-424 32-57 (353)
211 3b1v_A Ferrous iron uptake tra 98.2 9.6E-07 3.3E-11 91.2 5.2 59 399-463 4-62 (272)
212 3zvr_A Dynamin-1; hydrolase, D 98.2 1.8E-06 6.3E-11 100.8 7.9 153 373-528 15-230 (772)
213 1r5b_A Eukaryotic peptide chai 98.2 6.8E-06 2.3E-10 91.1 11.6 92 287-388 141-243 (467)
214 2wji_A Ferrous iron transport 98.1 1.6E-06 5.4E-11 81.2 5.3 59 399-463 4-63 (165)
215 2wjg_A FEOB, ferrous iron tran 98.1 2.9E-06 9.9E-11 80.3 6.9 59 399-463 8-67 (188)
216 2cxx_A Probable GTP-binding pr 98.1 1.6E-06 5.5E-11 81.9 5.2 55 400-463 3-57 (190)
217 2qtf_A Protein HFLX, GTP-bindi 98.1 4.5E-06 1.5E-10 89.8 9.1 87 401-495 182-269 (364)
218 2lkc_A Translation initiation 98.1 6.8E-07 2.3E-11 83.6 2.3 113 397-528 7-120 (178)
219 1dar_A EF-G, elongation factor 98.1 1.2E-05 4.3E-10 93.2 13.2 27 372-398 257-283 (691)
220 2dby_A GTP-binding protein; GD 98.1 3E-06 1E-10 91.3 7.0 88 399-495 2-111 (368)
221 2h5e_A Peptide chain release f 98.1 1.1E-05 3.6E-10 91.1 11.7 48 287-347 102-149 (529)
222 2qu8_A Putative nucleolar GTP- 98.1 3.6E-06 1.2E-10 83.2 6.6 60 398-463 29-89 (228)
223 1pui_A ENGB, probable GTP-bind 98.1 2.2E-06 7.5E-11 82.9 4.9 61 397-463 25-85 (210)
224 2qpt_A EH domain-containing pr 98.1 3.3E-06 1.1E-10 95.6 6.4 124 398-528 65-231 (550)
225 3p32_A Probable GTPase RV1496/ 98.0 3.9E-06 1.3E-10 89.6 6.1 90 289-396 191-283 (355)
226 2f9l_A RAB11B, member RAS onco 98.0 1.4E-05 4.9E-10 76.9 9.4 89 289-394 76-165 (199)
227 1z0f_A RAB14, member RAS oncog 98.0 1.4E-05 4.7E-10 74.4 8.6 83 399-497 16-101 (179)
228 3tw8_B RAS-related protein RAB 98.0 7.8E-06 2.7E-10 76.2 6.5 58 399-462 10-70 (181)
229 1lnz_A SPO0B-associated GTP-bi 98.0 3E-06 1E-10 90.5 3.9 87 400-495 160-248 (342)
230 4dsu_A GTPase KRAS, isoform 2B 98.0 9.6E-06 3.3E-10 76.3 6.8 57 399-462 5-64 (189)
231 3q72_A GTP-binding protein RAD 98.0 4.4E-06 1.5E-10 77.1 4.3 57 399-463 3-62 (166)
232 2il1_A RAB12; G-protein, GDP, 97.9 1.7E-05 5.7E-10 76.0 8.3 85 399-499 27-114 (192)
233 3t5g_A GTP-binding protein RHE 97.9 1.8E-05 6.1E-10 74.3 8.3 58 399-463 7-67 (181)
234 2nzj_A GTP-binding protein REM 97.9 8.7E-06 3E-10 75.6 5.9 57 399-462 5-64 (175)
235 2y8e_A RAB-protein 6, GH09086P 97.9 1.1E-05 3.7E-10 75.1 6.5 81 399-495 15-98 (179)
236 1zo1_I IF2, translation initia 97.9 9.5E-06 3.2E-10 90.8 7.0 90 287-393 71-163 (501)
237 1kao_A RAP2A; GTP-binding prot 97.9 1.4E-05 4.6E-10 73.2 6.8 80 399-495 4-86 (167)
238 1u8z_A RAS-related protein RAL 97.9 1.3E-05 4.6E-10 73.3 6.8 80 399-495 5-87 (168)
239 1yrb_A ATP(GTP)binding protein 97.9 4.3E-06 1.5E-10 84.0 3.7 98 287-396 135-256 (262)
240 1wms_A RAB-9, RAB9, RAS-relate 97.9 1.2E-05 4.2E-10 74.9 6.5 57 399-461 8-67 (177)
241 2g6b_A RAS-related protein RAB 97.9 1.3E-05 4.5E-10 74.9 6.6 83 399-496 11-96 (180)
242 2ged_A SR-beta, signal recogni 97.9 1.8E-05 6.2E-10 75.2 7.5 82 398-494 48-129 (193)
243 1fzq_A ADP-ribosylation factor 97.9 7.8E-06 2.7E-10 77.7 4.8 81 397-495 15-95 (181)
244 1z0j_A RAB-22, RAS-related pro 97.9 1.3E-05 4.4E-10 74.0 6.1 82 399-496 7-91 (170)
245 2bcg_Y Protein YP2, GTP-bindin 97.9 1.7E-05 5.9E-10 76.4 7.3 82 399-496 9-93 (206)
246 2fn4_A P23, RAS-related protei 97.9 1.7E-05 5.8E-10 73.9 6.9 80 399-495 10-92 (181)
247 2dy1_A Elongation factor G; tr 97.9 4.7E-05 1.6E-09 88.0 12.0 26 372-397 249-274 (665)
248 1g16_A RAS-related protein SEC 97.9 9.8E-06 3.4E-10 74.7 5.0 82 399-496 4-88 (170)
249 3j2k_7 ERF3, eukaryotic polype 97.9 9E-06 3.1E-10 89.4 5.5 91 398-498 17-133 (439)
250 3tkl_A RAS-related protein RAB 97.9 1.6E-05 5.4E-10 75.5 6.5 82 399-496 17-101 (196)
251 2x77_A ADP-ribosylation factor 97.9 2.3E-05 7.8E-10 74.4 7.6 93 385-495 8-101 (189)
252 3r7w_A Gtpase1, GTP-binding pr 97.9 8.7E-06 3E-10 85.1 5.0 90 398-497 3-94 (307)
253 1zj6_A ADP-ribosylation factor 97.9 4.5E-05 1.5E-09 72.3 9.4 81 397-495 15-95 (187)
254 2bov_A RAla, RAS-related prote 97.9 1.8E-05 6.3E-10 75.7 6.7 56 399-461 15-73 (206)
255 1ek0_A Protein (GTP-binding pr 97.9 1.5E-05 5.2E-10 73.3 5.9 82 399-496 4-88 (170)
256 2h17_A ADP-ribosylation factor 97.8 2.4E-05 8.1E-10 74.0 7.3 81 398-496 21-101 (181)
257 1nrj_B SR-beta, signal recogni 97.8 3.5E-05 1.2E-09 75.0 8.6 86 289-383 81-170 (218)
258 2a9k_A RAS-related protein RAL 97.8 2.1E-05 7.1E-10 73.7 6.8 80 399-495 19-101 (187)
259 2bme_A RAB4A, RAS-related prot 97.8 1.9E-05 6.4E-10 74.4 6.4 81 399-495 11-94 (186)
260 1z2a_A RAS-related protein RAB 97.8 1.4E-05 4.9E-10 73.4 5.4 82 399-496 6-90 (168)
261 3tr5_A RF-3, peptide chain rel 97.8 4.2E-06 1.4E-10 94.3 2.0 134 399-545 14-164 (528)
262 2p67_A LAO/AO transport system 97.8 1.4E-05 4.9E-10 84.8 6.0 86 289-395 168-259 (341)
263 1moz_A ARL1, ADP-ribosylation 97.8 2.3E-05 7.8E-10 73.6 6.7 81 397-495 17-97 (183)
264 1c1y_A RAS-related protein RAP 97.8 2.3E-05 7.8E-10 72.0 6.5 80 399-495 4-86 (167)
265 1z08_A RAS-related protein RAB 97.8 2E-05 7E-10 72.7 6.3 57 399-461 7-66 (170)
266 3cph_A RAS-related protein SEC 97.8 1.5E-05 5.3E-10 76.8 5.6 83 398-496 20-105 (213)
267 3con_A GTPase NRAS; structural 97.8 2.3E-05 8E-10 74.2 6.8 56 399-461 22-80 (190)
268 2wsm_A Hydrogenase expression/ 97.8 2.9E-05 1E-09 75.8 7.5 82 291-395 130-212 (221)
269 2ce2_X GTPase HRAS; signaling 97.8 2.9E-05 9.9E-10 70.8 6.9 80 399-495 4-86 (166)
270 1vg8_A RAS-related protein RAB 97.8 2.1E-05 7.1E-10 75.5 6.1 57 399-461 9-68 (207)
271 2oil_A CATX-8, RAS-related pro 97.8 4.4E-05 1.5E-09 72.6 8.3 81 399-495 26-109 (193)
272 1ksh_A ARF-like protein 2; sma 97.8 2E-05 6.9E-10 74.4 5.8 82 397-496 17-98 (186)
273 2rdo_7 EF-G, elongation factor 97.8 0.00012 4E-09 85.3 13.3 27 372-398 263-289 (704)
274 1upt_A ARL1, ADP-ribosylation 97.8 1.9E-05 6.3E-10 73.1 5.3 81 397-495 6-86 (171)
275 4djt_A GTP-binding nuclear pro 97.8 1.4E-05 4.7E-10 77.8 4.5 84 399-497 12-98 (218)
276 2q3h_A RAS homolog gene family 97.8 5.3E-05 1.8E-09 72.5 8.4 82 398-496 20-104 (201)
277 2xex_A Elongation factor G; GT 97.8 9.1E-06 3.1E-10 94.4 3.5 133 399-544 11-156 (693)
278 3t34_A Dynamin-related protein 97.8 2.3E-05 7.9E-10 83.5 6.4 93 277-389 161-253 (360)
279 1r2q_A RAS-related protein RAB 97.8 2.6E-05 8.8E-10 71.7 5.9 82 399-496 7-91 (170)
280 2gf9_A RAS-related protein RAB 97.8 6.8E-05 2.3E-09 71.2 8.8 81 399-495 23-106 (189)
281 1z06_A RAS-related protein RAB 97.7 2.8E-05 9.7E-10 73.9 6.1 83 399-496 21-106 (189)
282 3clv_A RAB5 protein, putative; 97.7 2.8E-05 9.6E-10 73.5 5.9 25 398-422 7-31 (208)
283 2fg5_A RAB-22B, RAS-related pr 97.7 2.8E-05 9.6E-10 74.3 5.8 82 398-495 23-107 (192)
284 3q85_A GTP-binding protein REM 97.7 2.6E-05 8.8E-10 72.1 5.3 59 399-463 3-64 (169)
285 1oix_A RAS-related protein RAB 97.7 4.1E-05 1.4E-09 73.6 6.8 89 289-394 100-189 (191)
286 4bas_A ADP-ribosylation factor 97.7 4E-05 1.4E-09 72.9 6.6 83 398-496 17-99 (199)
287 1m2o_B GTP-binding protein SAR 97.7 3.4E-05 1.1E-09 74.0 6.1 80 398-495 23-102 (190)
288 2ged_A SR-beta, signal recogni 97.7 0.0001 3.5E-09 69.9 9.3 26 201-226 47-73 (193)
289 3c5h_A Glucocorticoid receptor 97.7 6.8E-05 2.3E-09 76.0 8.4 89 290-394 162-252 (255)
290 2efe_B Small GTP-binding prote 97.7 3.4E-05 1.2E-09 72.1 5.7 82 399-496 13-97 (181)
291 2erx_A GTP-binding protein DI- 97.7 2.5E-05 8.7E-10 71.9 4.8 83 399-495 4-86 (172)
292 2o52_A RAS-related protein RAB 97.7 2.7E-05 9.2E-10 75.2 5.2 82 398-495 25-109 (200)
293 1x3s_A RAS-related protein RAB 97.7 5.9E-05 2E-09 71.3 7.4 82 399-496 16-100 (195)
294 2qpt_A EH domain-containing pr 97.7 9.9E-06 3.4E-10 91.7 2.3 50 287-348 185-234 (550)
295 3vqt_A RF-3, peptide chain rel 97.7 0.00029 9.8E-09 79.7 14.0 59 270-347 108-167 (548)
296 2h57_A ADP-ribosylation factor 97.7 8E-05 2.7E-09 70.7 8.0 83 398-496 21-103 (190)
297 2hxs_A RAB-26, RAS-related pro 97.7 4E-05 1.4E-09 71.4 5.7 82 399-496 7-92 (178)
298 4gzl_A RAS-related C3 botulinu 97.7 5E-05 1.7E-09 73.6 6.5 111 398-528 30-147 (204)
299 1f6b_A SAR1; gtpases, N-termin 97.7 3.4E-05 1.2E-09 74.6 5.3 81 397-495 24-104 (198)
300 1zbd_A Rabphilin-3A; G protein 97.7 5.3E-05 1.8E-09 72.7 6.6 81 399-495 9-92 (203)
301 3kkq_A RAS-related protein M-R 97.7 5.7E-05 2E-09 70.9 6.7 82 398-496 18-102 (183)
302 2fu5_C RAS-related protein RAB 97.7 1.6E-05 5.6E-10 74.7 2.9 58 399-462 9-69 (183)
303 3p26_A Elongation factor 1 alp 97.7 4.4E-05 1.5E-09 84.8 6.8 102 387-499 23-150 (483)
304 1mh1_A RAC1; GTP-binding, GTPa 97.6 5E-05 1.7E-09 71.1 6.0 80 399-495 6-88 (186)
305 2ew1_A RAS-related protein RAB 97.6 5.1E-05 1.7E-09 73.9 6.2 56 399-460 27-85 (201)
306 2p5s_A RAS and EF-hand domain 97.6 0.0001 3.5E-09 70.8 8.2 84 398-497 28-114 (199)
307 3cpj_B GTP-binding protein YPT 97.6 6.9E-05 2.4E-09 73.5 7.1 81 399-495 14-97 (223)
308 3c5c_A RAS-like protein 12; GD 97.6 6.6E-05 2.3E-09 71.6 6.8 57 399-462 22-81 (187)
309 2a5j_A RAS-related protein RAB 97.6 3.6E-05 1.2E-09 73.4 4.9 81 399-495 22-105 (191)
310 3oes_A GTPase rhebl1; small GT 97.6 5.3E-05 1.8E-09 72.9 6.0 60 398-464 24-86 (201)
311 3cbq_A GTP-binding protein REM 97.6 3.5E-05 1.2E-09 74.4 4.6 58 399-462 24-84 (195)
312 3l0i_B RAS-related protein RAB 97.6 1.3E-05 4.6E-10 77.0 1.5 59 399-463 34-95 (199)
313 2atv_A RERG, RAS-like estrogen 97.6 0.0002 6.8E-09 68.4 9.7 80 398-495 28-110 (196)
314 3reg_A RHO-like small GTPase; 97.6 7.5E-05 2.6E-09 71.2 6.7 81 399-496 24-107 (194)
315 3gj0_A GTP-binding nuclear pro 97.6 5.5E-05 1.9E-09 73.9 5.8 82 399-496 16-100 (221)
316 2wkq_A NPH1-1, RAS-related C3 97.6 0.00011 3.8E-09 75.8 8.4 92 389-497 146-240 (332)
317 3izy_P Translation initiation 97.6 6.1E-06 2.1E-10 93.1 -1.3 113 397-528 3-117 (537)
318 2fv8_A H6, RHO-related GTP-bin 97.6 5.6E-05 1.9E-09 73.2 5.7 80 399-495 26-108 (207)
319 3bc1_A RAS-related protein RAB 97.6 8.2E-05 2.8E-09 69.9 6.6 82 399-496 12-106 (195)
320 1ky3_A GTP-binding protein YPT 97.6 3E-05 1E-09 72.3 3.3 57 399-461 9-69 (182)
321 2fh5_B SR-beta, signal recogni 97.6 7.6E-05 2.6E-09 72.3 6.3 80 398-495 7-90 (214)
322 2www_A Methylmalonic aciduria 97.6 1.4E-05 4.8E-10 85.3 0.8 23 398-420 74-96 (349)
323 1r8s_A ADP-ribosylation factor 97.5 7.2E-05 2.4E-09 68.7 5.5 78 400-495 2-79 (164)
324 1jal_A YCHF protein; nucleotid 97.5 0.00023 7.7E-09 76.6 10.1 24 202-225 2-26 (363)
325 2j1l_A RHO-related GTP-binding 97.5 8.6E-05 2.9E-09 72.5 6.2 57 398-461 34-93 (214)
326 2qm8_A GTPase/ATPase; G protei 97.5 0.00018 6.3E-09 76.3 9.1 87 289-395 167-259 (337)
327 1h65_A Chloroplast outer envel 97.5 0.00039 1.3E-08 70.8 11.3 53 289-348 118-170 (270)
328 2hup_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 72.5 5.3 81 399-495 30-113 (201)
329 1zd9_A ADP-ribosylation factor 97.5 7.1E-05 2.4E-09 71.2 5.3 81 398-495 22-102 (188)
330 2h5e_A Peptide chain release f 97.5 4.3E-05 1.5E-09 86.1 4.2 134 398-544 13-163 (529)
331 2b6h_A ADP-ribosylation factor 97.5 0.00014 4.9E-09 69.7 7.4 81 398-496 29-109 (192)
332 2j0v_A RAC-like GTP-binding pr 97.5 0.00016 5.5E-09 69.9 7.6 58 399-463 10-70 (212)
333 2atx_A Small GTP binding prote 97.5 8.1E-05 2.8E-09 70.8 5.4 80 399-495 19-101 (194)
334 2cjw_A GTP-binding protein GEM 97.5 6.2E-05 2.1E-09 72.5 4.3 59 399-462 7-68 (192)
335 2gf0_A GTP-binding protein DI- 97.5 7.5E-05 2.6E-09 71.0 4.7 84 398-495 8-91 (199)
336 3def_A T7I23.11 protein; chlor 97.5 0.00016 5.5E-09 73.4 7.3 52 289-347 115-166 (262)
337 1dar_A EF-G, elongation factor 97.5 5.8E-05 2E-09 87.7 4.5 133 399-544 13-158 (691)
338 2f7s_A C25KG, RAS-related prot 97.5 7.3E-05 2.5E-09 72.6 4.4 24 399-422 26-49 (217)
339 3dz8_A RAS-related protein RAB 97.4 3.4E-05 1.1E-09 73.6 1.9 83 399-495 24-107 (191)
340 3bwd_D RAC-like GTP-binding pr 97.4 4.5E-05 1.5E-09 71.3 2.6 81 398-495 8-91 (182)
341 2elf_A Protein translation elo 97.4 5.5E-05 1.9E-09 81.4 3.5 74 400-498 23-97 (370)
342 2qag_A Septin-2, protein NEDD5 97.4 4.8E-05 1.6E-09 81.5 3.0 85 290-395 145-235 (361)
343 3th5_A RAS-related C3 botulinu 96.6 2E-05 6.9E-10 75.9 0.0 58 398-462 30-90 (204)
344 2yc2_C IFT27, small RAB-relate 97.4 5.2E-05 1.8E-09 72.5 2.9 58 399-461 21-84 (208)
345 1udx_A The GTP-binding protein 97.4 0.00025 8.6E-09 77.5 8.5 88 398-494 157-246 (416)
346 2zej_A Dardarin, leucine-rich 97.4 0.00012 4.2E-09 69.4 5.3 59 399-461 3-67 (184)
347 3izq_1 HBS1P, elongation facto 97.4 4.4E-05 1.5E-09 87.5 2.4 90 397-496 166-281 (611)
348 2gco_A H9, RHO-related GTP-bin 97.4 9.9E-05 3.4E-09 71.1 4.6 57 398-461 25-84 (201)
349 3t34_A Dynamin-related protein 97.4 0.00016 5.6E-09 76.9 6.7 24 400-423 36-59 (360)
350 3j25_A Tetracycline resistance 97.4 0.00046 1.6E-08 79.4 10.7 60 270-348 75-135 (638)
351 1m7b_A RND3/RHOE small GTP-bin 97.4 0.0002 7E-09 67.7 6.6 24 399-422 8-31 (184)
352 2iwr_A Centaurin gamma 1; ANK 97.4 0.00013 4.4E-09 68.1 5.1 56 399-462 8-66 (178)
353 2qm8_A GTPase/ATPase; G protei 97.4 3.5E-05 1.2E-09 81.9 1.1 35 386-420 43-77 (337)
354 2g3y_A GTP-binding protein GEM 97.4 0.00012 4.2E-09 72.3 4.9 58 399-461 38-98 (211)
355 2qag_A Septin-2, protein NEDD5 97.4 0.00013 4.3E-09 78.3 5.3 64 399-462 38-107 (361)
356 2c78_A Elongation factor TU-A; 97.4 3.7E-05 1.3E-09 83.3 1.1 118 398-528 11-141 (405)
357 1nrj_B SR-beta, signal recogni 97.4 9.2E-05 3.2E-09 71.9 3.7 82 398-494 12-93 (218)
358 3ihw_A Centg3; RAS, centaurin, 97.3 0.00026 8.9E-09 67.5 6.4 55 399-461 21-78 (184)
359 3mca_A HBS1, elongation factor 97.3 3.8E-05 1.3E-09 87.6 0.7 64 399-462 178-267 (592)
360 3q5d_A Atlastin-1; G protein, 97.3 9E-05 3.1E-09 81.8 3.3 23 399-421 68-90 (447)
361 1zun_B Sulfate adenylate trans 97.3 0.00019 6.7E-09 78.5 5.9 90 399-498 25-142 (434)
362 3q3j_B RHO-related GTP-binding 97.3 0.00026 9E-09 69.2 6.3 57 398-461 27-86 (214)
363 2f9l_A RAB11B, member RAS onco 97.3 0.00028 9.5E-09 67.8 6.2 58 399-462 6-66 (199)
364 1gwn_A RHO-related GTP-binding 97.3 0.00031 1.1E-08 68.4 6.5 81 398-495 28-111 (205)
365 2rdo_7 EF-G, elongation factor 97.3 0.00026 9E-09 82.3 7.0 134 399-545 11-164 (704)
366 1tq4_A IIGP1, interferon-induc 97.3 0.00021 7.3E-09 78.1 5.7 77 386-463 57-133 (413)
367 1wb1_A Translation elongation 97.3 7.9E-05 2.7E-09 82.9 2.2 117 399-528 20-138 (482)
368 4fn5_A EF-G 1, elongation fact 97.2 0.0021 7.3E-08 74.7 14.2 58 270-346 93-151 (709)
369 3lvq_E ARF-GAP with SH3 domain 97.2 0.00016 5.4E-09 80.2 4.3 80 398-495 322-401 (497)
370 1oix_A RAS-related protein RAB 97.2 0.00045 1.5E-08 66.2 6.8 58 399-462 30-90 (191)
371 1zo1_I IF2, translation initia 97.2 5.5E-05 1.9E-09 84.7 0.1 60 398-463 4-64 (501)
372 2qnr_A Septin-2, protein NEDD5 97.2 0.00036 1.2E-08 72.8 6.2 69 332-406 155-223 (301)
373 3llu_A RAS-related GTP-binding 97.2 0.00041 1.4E-08 66.4 6.2 87 398-496 20-108 (196)
374 1tq4_A IIGP1, interferon-induc 97.1 0.00082 2.8E-08 73.4 8.6 111 288-414 146-271 (413)
375 3cb4_D GTP-binding protein LEP 97.1 0.00017 5.7E-09 82.5 3.0 133 399-544 5-152 (599)
376 2dby_A GTP-binding protein; GD 97.0 0.0014 4.7E-08 70.6 9.1 51 333-389 202-254 (368)
377 2ywe_A GTP-binding protein LEP 97.0 0.00019 6.4E-09 82.1 2.2 133 399-544 7-154 (600)
378 3o47_A ADP-ribosylation factor 97.0 0.00053 1.8E-08 72.3 5.5 80 398-495 165-244 (329)
379 3p32_A Probable GTPase RV1496/ 97.0 0.00046 1.6E-08 73.5 4.7 36 386-421 67-102 (355)
380 1d2e_A Elongation factor TU (E 96.9 0.00035 1.2E-08 75.5 3.5 90 399-498 4-104 (397)
381 2qag_B Septin-6, protein NEDD5 96.9 0.0011 3.8E-08 72.7 7.3 74 388-463 30-108 (427)
382 1f60_A Elongation factor EEF1A 96.9 0.00019 6.4E-09 79.3 1.1 88 399-496 8-121 (458)
383 2p67_A LAO/AO transport system 96.9 0.00062 2.1E-08 72.2 5.0 36 385-420 43-78 (341)
384 3dpu_A RAB family protein; roc 96.9 0.00042 1.4E-08 77.7 3.9 41 382-422 14-65 (535)
385 3t1o_A Gliding protein MGLA; G 96.9 0.00062 2.1E-08 64.1 4.3 24 399-422 15-38 (198)
386 1n0u_A EF-2, elongation factor 96.8 0.00033 1.1E-08 83.1 2.2 85 287-384 118-220 (842)
387 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.00096 3.3E-08 72.4 5.6 29 201-229 19-48 (392)
388 1jny_A EF-1-alpha, elongation 96.8 0.0004 1.4E-08 76.1 2.2 88 399-496 7-120 (435)
389 4dkx_A RAS-related protein RAB 96.7 0.0011 3.7E-08 65.8 4.8 59 399-463 14-75 (216)
390 1r5b_A Eukaryotic peptide chai 96.7 0.00046 1.6E-08 76.4 2.2 90 398-497 43-158 (467)
391 1kk1_A EIF2gamma; initiation o 96.7 0.00082 2.8E-08 72.8 4.1 85 399-496 11-119 (410)
392 1g7s_A Translation initiation 96.6 0.00029 9.9E-09 80.5 -0.1 109 399-527 6-134 (594)
393 1s0u_A EIF-2-gamma, translatio 96.6 0.0012 4.1E-08 71.5 4.7 86 398-496 8-117 (408)
394 3sjy_A Translation initiation 96.6 0.0036 1.2E-07 67.7 8.4 24 398-421 8-31 (403)
395 2j37_W Signal recognition part 96.6 0.0026 8.9E-08 71.2 7.4 82 290-394 213-310 (504)
396 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0015 5.2E-08 70.1 4.8 104 287-393 221-349 (362)
397 1n0u_A EF-2, elongation factor 96.6 0.00094 3.2E-08 79.2 3.5 117 399-528 20-163 (842)
398 2dy1_A Elongation factor G; tr 96.5 0.0013 4.5E-08 75.9 4.0 133 398-544 9-154 (665)
399 3sop_A Neuronal-specific septi 96.4 0.0014 4.7E-08 67.4 3.2 64 400-463 4-73 (270)
400 2qag_C Septin-7; cell cycle, c 96.3 0.0029 1E-07 69.2 5.5 25 399-423 32-56 (418)
401 1cip_A Protein (guanine nucleo 96.3 0.0019 6.4E-08 69.1 3.6 105 287-394 213-341 (353)
402 2qag_B Septin-6, protein NEDD5 96.1 0.0018 6E-08 71.1 2.4 68 293-379 151-218 (427)
403 1ko7_A HPR kinase/phosphatase; 96.1 0.0028 9.7E-08 66.7 3.8 75 333-421 81-167 (314)
404 3h2y_A GTPase family protein; 96.0 0.00014 4.7E-09 78.2 -7.0 23 107-129 5-27 (368)
405 2wsm_A Hydrogenase expression/ 96.0 0.00067 2.3E-08 66.0 -1.8 23 399-421 31-53 (221)
406 2qnr_A Septin-2, protein NEDD5 95.9 0.0043 1.5E-07 64.6 3.9 23 399-421 19-41 (301)
407 3avx_A Elongation factor TS, e 95.8 0.0035 1.2E-07 76.2 3.3 91 399-499 297-398 (1289)
408 3ec1_A YQEH GTPase; atnos1, at 95.8 0.00032 1.1E-08 75.3 -5.4 24 107-130 5-28 (369)
409 3vqt_A RF-3, peptide chain rel 95.5 0.0042 1.4E-07 70.2 2.0 135 398-545 31-182 (548)
410 2j37_W Signal recognition part 95.2 0.011 3.9E-07 66.0 4.5 21 399-419 102-122 (504)
411 3l82_B F-box only protein 4; T 95.1 0.051 1.7E-06 54.3 8.2 99 288-396 123-222 (227)
412 2hf9_A Probable hydrogenase ni 94.9 0.007 2.4E-07 58.9 1.4 56 333-394 165-221 (226)
413 3ney_A 55 kDa erythrocyte memb 94.7 0.014 4.8E-07 57.4 2.9 40 398-441 19-58 (197)
414 2ohf_A Protein OLA1, GTP-bindi 94.7 0.011 3.6E-07 64.3 2.2 33 201-234 21-54 (396)
415 3c8u_A Fructokinase; YP_612366 94.7 0.013 4.4E-07 57.0 2.6 27 396-422 20-46 (208)
416 3ohm_A Guanine nucleotide-bind 94.6 0.038 1.3E-06 58.4 6.2 104 287-393 187-314 (327)
417 1yrb_A ATP(GTP)binding protein 94.6 0.0065 2.2E-07 60.6 0.3 21 399-419 15-35 (262)
418 3j25_A Tetracycline resistance 94.5 0.0079 2.7E-07 69.1 0.7 134 399-545 3-149 (638)
419 2hf9_A Probable hydrogenase ni 94.4 0.0073 2.5E-07 58.8 0.2 23 399-421 39-61 (226)
420 3r7w_B Gtpase2, GTP-binding pr 94.4 0.024 8.1E-07 60.1 4.0 57 400-463 1-59 (331)
421 1znw_A Guanylate kinase, GMP k 94.3 0.017 5.9E-07 56.0 2.5 27 396-422 18-44 (207)
422 2xtz_A Guanine nucleotide-bind 94.2 0.021 7.4E-07 60.9 3.3 104 287-393 203-341 (354)
423 2v3c_C SRP54, signal recogniti 94.0 0.015 5.3E-07 63.7 1.7 23 399-421 100-122 (432)
424 1azs_C GS-alpha; complex (lyas 94.0 0.016 5.6E-07 63.0 1.7 105 287-394 237-382 (402)
425 1lvg_A Guanylate kinase, GMP k 93.8 0.023 8E-07 55.0 2.3 24 398-421 4-27 (198)
426 3r7w_B Gtpase2, GTP-binding pr 93.7 0.11 3.8E-06 55.0 7.5 99 288-395 70-172 (331)
427 4fn5_A EF-G 1, elongation fact 93.6 0.023 7.9E-07 66.0 2.3 134 399-545 14-167 (709)
428 4fid_A G protein alpha subunit 93.6 0.05 1.7E-06 57.8 4.7 104 287-393 181-324 (340)
429 3dm5_A SRP54, signal recogniti 93.6 1.2 4.1E-05 48.9 15.6 72 289-388 211-282 (443)
430 1kgd_A CASK, peripheral plasma 93.3 0.034 1.2E-06 52.7 2.6 25 398-422 5-29 (180)
431 2eyu_A Twitching motility prot 93.3 0.04 1.4E-06 56.1 3.2 37 383-421 12-48 (261)
432 3l2o_B F-box only protein 4; s 93.2 0.22 7.5E-06 52.0 8.5 96 288-396 208-307 (312)
433 2qag_C Septin-7; cell cycle, c 92.9 0.065 2.2E-06 58.5 4.2 60 332-396 167-226 (418)
434 3c5h_A Glucocorticoid receptor 92.8 0.043 1.5E-06 55.2 2.6 23 399-421 20-51 (255)
435 1s96_A Guanylate kinase, GMP k 92.7 0.046 1.6E-06 54.2 2.6 29 394-422 12-40 (219)
436 1zp6_A Hypothetical protein AT 92.6 0.053 1.8E-06 51.2 2.8 25 397-421 8-32 (191)
437 4a74_A DNA repair and recombin 92.5 0.047 1.6E-06 52.8 2.3 40 382-421 9-48 (231)
438 1z6g_A Guanylate kinase; struc 92.5 0.052 1.8E-06 53.4 2.6 25 397-421 22-46 (218)
439 4ido_A Atlastin-1; GTPase, GTP 92.3 0.13 4.5E-06 56.7 5.8 20 400-419 69-88 (457)
440 2v9p_A Replication protein E1; 92.2 0.086 2.9E-06 55.2 4.0 37 386-422 114-150 (305)
441 3tr0_A Guanylate kinase, GMP k 92.2 0.063 2.1E-06 51.2 2.7 25 397-421 6-30 (205)
442 1ex7_A Guanylate kinase; subst 92.1 0.058 2E-06 52.4 2.3 23 400-422 3-25 (186)
443 1ye8_A Protein THEP1, hypothet 91.9 0.062 2.1E-06 51.4 2.3 23 400-422 2-24 (178)
444 2gza_A Type IV secretion syste 91.6 0.085 2.9E-06 56.2 3.2 34 389-422 166-199 (361)
445 2ehv_A Hypothetical protein PH 91.5 0.05 1.7E-06 53.3 1.2 26 394-419 26-51 (251)
446 3tif_A Uncharacterized ABC tra 91.5 0.088 3E-06 52.6 2.9 27 396-422 29-55 (235)
447 3jvv_A Twitching mobility prot 91.4 0.1 3.4E-06 55.8 3.5 26 396-421 121-146 (356)
448 2qor_A Guanylate kinase; phosp 91.4 0.09 3.1E-06 50.7 2.8 27 396-422 10-36 (204)
449 3sop_A Neuronal-specific septi 91.4 0.34 1.2E-05 49.4 7.3 50 287-349 108-157 (270)
450 2pcj_A ABC transporter, lipopr 91.2 0.086 3E-06 52.3 2.5 27 396-422 28-54 (224)
451 3a00_A Guanylate kinase, GMP k 91.1 0.087 3E-06 50.1 2.4 23 400-422 3-25 (186)
452 2pt7_A CAG-ALFA; ATPase, prote 91.1 0.097 3.3E-06 55.1 3.0 37 386-422 159-195 (330)
453 2cbz_A Multidrug resistance-as 91.1 0.1 3.4E-06 52.3 2.9 27 396-422 29-55 (237)
454 1rz3_A Hypothetical protein rb 91.0 0.14 4.7E-06 49.4 3.7 37 385-421 8-45 (201)
455 2j41_A Guanylate kinase; GMP, 91.0 0.1 3.4E-06 49.7 2.7 25 397-421 5-29 (207)
456 3tau_A Guanylate kinase, GMP k 91.0 0.1 3.5E-06 50.6 2.8 26 397-422 7-32 (208)
457 1mv5_A LMRA, multidrug resista 90.8 0.1 3.6E-06 52.3 2.8 27 396-422 26-52 (243)
458 1b0u_A Histidine permease; ABC 90.7 0.12 4E-06 52.6 3.0 27 396-422 30-56 (262)
459 2ghi_A Transport protein; mult 90.4 0.13 4.3E-06 52.3 2.9 27 396-422 44-70 (260)
460 3co5_A Putative two-component 90.4 0.23 7.9E-06 45.2 4.5 38 384-421 13-50 (143)
461 2ff7_A Alpha-hemolysin translo 90.4 0.11 3.7E-06 52.4 2.4 27 396-422 33-59 (247)
462 2olj_A Amino acid ABC transpor 90.3 0.13 4.5E-06 52.5 3.0 27 396-422 48-74 (263)
463 2cvh_A DNA repair and recombin 90.3 0.14 4.9E-06 49.0 3.1 39 382-420 4-42 (220)
464 1sgw_A Putative ABC transporte 90.3 0.12 4E-06 51.2 2.5 27 396-422 33-59 (214)
465 2ixe_A Antigen peptide transpo 90.3 0.13 4.5E-06 52.6 2.9 27 396-422 43-69 (271)
466 2pze_A Cystic fibrosis transme 90.2 0.12 4E-06 51.5 2.5 27 396-422 32-58 (229)
467 2v3c_C SRP54, signal recogniti 90.2 0.5 1.7E-05 51.6 7.7 87 288-396 208-310 (432)
468 1vpl_A ABC transporter, ATP-bi 90.2 0.13 4.6E-06 52.1 3.0 28 395-422 38-65 (256)
469 1g6h_A High-affinity branched- 90.2 0.11 3.9E-06 52.5 2.4 27 396-422 31-57 (257)
470 4eun_A Thermoresistant glucoki 90.2 0.12 4.3E-06 49.5 2.6 25 398-422 29-53 (200)
471 4gp7_A Metallophosphoesterase; 90.2 0.11 3.7E-06 48.9 2.1 23 398-420 9-31 (171)
472 3b85_A Phosphate starvation-in 90.1 0.16 5.4E-06 49.9 3.3 24 398-421 22-45 (208)
473 2zu0_C Probable ATP-dependent 90.1 0.14 4.7E-06 52.3 2.9 26 396-421 44-69 (267)
474 3ec2_A DNA replication protein 90.1 0.12 4.2E-06 48.5 2.4 24 398-421 38-61 (180)
475 2kjq_A DNAA-related protein; s 90.1 0.11 3.8E-06 48.1 2.0 34 386-421 26-59 (149)
476 3asz_A Uridine kinase; cytidin 89.9 0.13 4.4E-06 49.5 2.4 24 398-421 6-29 (211)
477 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.12 4E-06 49.8 2.2 40 382-421 7-46 (235)
478 1ji0_A ABC transporter; ATP bi 89.9 0.13 4.4E-06 51.6 2.4 27 396-422 30-56 (240)
479 4g1u_C Hemin import ATP-bindin 89.8 0.13 4.4E-06 52.5 2.5 27 396-422 35-61 (266)
480 1kag_A SKI, shikimate kinase I 89.8 0.14 4.7E-06 47.4 2.5 24 399-422 5-28 (173)
481 2yz2_A Putative ABC transporte 89.8 0.15 5.2E-06 51.9 2.9 27 396-422 31-57 (266)
482 2d2e_A SUFC protein; ABC-ATPas 89.8 0.13 4.4E-06 51.9 2.4 25 397-421 28-52 (250)
483 1odf_A YGR205W, hypothetical 3 89.8 0.2 6.9E-06 51.8 3.9 38 385-422 14-55 (290)
484 3gfo_A Cobalt import ATP-bindi 89.8 0.13 4.5E-06 52.8 2.5 27 396-422 32-58 (275)
485 3n70_A Transport activator; si 89.7 0.26 8.9E-06 44.9 4.3 38 384-421 10-47 (145)
486 1n0w_A DNA repair protein RAD5 89.7 0.14 5E-06 49.8 2.7 40 382-421 8-47 (243)
487 1jbk_A CLPB protein; beta barr 89.7 0.23 7.8E-06 45.6 3.9 39 383-421 26-66 (195)
488 2qi9_C Vitamin B12 import ATP- 89.6 0.14 4.7E-06 51.8 2.5 27 396-422 24-50 (249)
489 3nh6_A ATP-binding cassette SU 89.6 0.11 3.7E-06 54.4 1.6 28 395-422 77-104 (306)
490 1np6_A Molybdopterin-guanine d 89.4 0.14 4.7E-06 49.0 2.2 22 400-421 8-29 (174)
491 2ihy_A ABC transporter, ATP-bi 89.3 0.15 5.1E-06 52.5 2.5 27 396-422 45-71 (279)
492 2oap_1 GSPE-2, type II secreti 89.3 0.2 6.7E-06 56.1 3.6 35 387-421 249-283 (511)
493 2nq2_C Hypothetical ABC transp 89.2 0.15 5.2E-06 51.5 2.5 27 396-422 29-55 (253)
494 2ewv_A Twitching motility prot 89.2 0.14 5E-06 54.7 2.4 26 396-421 134-159 (372)
495 2bdt_A BH3686; alpha-beta prot 89.2 0.15 5E-06 48.2 2.1 21 400-420 4-24 (189)
496 2bbw_A Adenylate kinase 4, AK4 89.1 0.18 6.2E-06 50.0 2.8 23 398-420 27-49 (246)
497 3uie_A Adenylyl-sulfate kinase 89.0 0.23 7.9E-06 47.6 3.5 27 396-422 23-49 (200)
498 3lnc_A Guanylate kinase, GMP k 88.9 0.13 4.6E-06 50.4 1.7 25 397-421 26-51 (231)
499 2i3b_A HCR-ntpase, human cance 88.8 0.18 6E-06 48.9 2.4 23 400-422 3-25 (189)
500 2bbs_A Cystic fibrosis transme 88.8 0.2 7E-06 51.8 3.0 27 396-422 62-88 (290)
No 1
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=100.00 E-value=8.4e-59 Score=502.18 Aligned_cols=334 Identities=32% Similarity=0.557 Sum_probs=260.6
Q ss_pred ceeecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005972 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~ 324 (666)
..+|||||+++||+++... .++...|.+.+... ...+++|++|+|+++|.++....+.+. +
T Consensus 36 ~~~C~RC~~l~hy~~~~~v----~~~~e~f~~~L~~~------~~~~~lil~VvD~~d~~~s~~~~l~~~----l----- 96 (369)
T 3ec1_A 36 EVICQRCFRLKHYNEVQDV----PLDDDDFLSMLHRI------GESKALVVNIVDIFDFNGSFIPGLPRF----A----- 96 (369)
T ss_dssp ---------------------------CHHHHHHHHH------HHHCCEEEEEEETTCSGGGCCSSHHHH----C-----
T ss_pred CEEchhHHHhhccccccCC----cCCHHHHHHHHHHh------hccCcEEEEEEECCCCCCchhhHHHHH----h-----
Confidence 5799999999999998753 35667777777653 345789999999999987665432211 1
Q ss_pred hhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEE
Q 005972 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vv 404 (666)
..+|+++|+||+||+++......+..|++.+++..|+. ..+++++||++|+|+++|++.|.+++. +.+++++
T Consensus 97 ------~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~-~~~v~~iSA~~g~gi~~L~~~I~~~~~-~~~i~~v 168 (369)
T 3ec1_A 97 ------ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC-PVDVCLVSAAKGIGMAKVMEAINRYRE-GGDVYVV 168 (369)
T ss_dssp ------TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC-CSEEEECBTTTTBTHHHHHHHHHHHHT-TSCEEEE
T ss_pred ------CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC-cccEEEEECCCCCCHHHHHHHHHhhcc-cCcEEEE
Confidence 24589999999999988766677889998888888853 357999999999999999999988765 4589999
Q ss_pred eecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhhc
Q 005972 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKEL 484 (666)
Q Consensus 405 G~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel 484 (666)
|.||||||||||+|++........+++++.||||++...+. ++.++.++||||+..+......+..+.+....+.+++
T Consensus 169 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i 246 (369)
T 3ec1_A 169 GCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LESGATLYDTPGIINHHQMAHFVDARDLKIITPKREI 246 (369)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCC
T ss_pred cCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhccccc
Confidence 99999999999999987322223445679999999987765 6678999999999988876667777777777777999
Q ss_pred CceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcCCCCCCcccccccCCccc
Q 005972 485 QPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWKD 564 (666)
Q Consensus 485 ~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L~PP~~~~~~~~l~~~~~ 564 (666)
+++.|++++++++++||+.++|+++....+ +++++++...+|.++++++.++|++|+|.+|+||++.+ ++.+++|++
T Consensus 247 ~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~--~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~-~~~~~~l~~ 323 (369)
T 3ec1_A 247 HPRVYQLNEGQTLFFGGLARLDYIKGGRRS--FVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRY-AAEFPPLVP 323 (369)
T ss_dssp CCEEEEECTTEEEEETTTEEEEEEESSSEE--EEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGG-TTTCCCEEE
T ss_pred CceEEEEcCCceEEECCEEEEEEccCCCce--EEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchh-hhhccCcEE
Confidence 999999999999999999999999986544 57788888899999999999999999999999999865 678899999
Q ss_pred eEEEEcCCCCCCccccEEEcccceEEeeccCceEEEEEeeCCeeEEEeCCCC
Q 005972 565 RKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 565 ~~~~i~~~~~~~~~~DIvIsGLGWisv~~~g~~~i~v~tP~Gv~v~~R~pli 616 (666)
++|.+.+ ..+||+|+|||||+|++ +++++++|+|+||+|++|+|||
T Consensus 324 ~~~~~~~-----~~~di~i~glgwi~v~~-~~~~~~~~~p~~v~v~~R~~li 369 (369)
T 3ec1_A 324 RSLSVKE-----RKTDIVFSGLGWVTCND-PGAQLVVHAPKGVDVFIRQSLI 369 (369)
T ss_dssp EEEECCS-----SSEEEEETTTEEEEESS-SCCEEEEEEETTSCEEEEECCC
T ss_pred EEEEeCC-----CceeEEEccCceEEeeC-CceEEEEEeCCCceEEeecCCC
Confidence 9998875 25899999999999984 4789999999999999999986
No 2
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=100.00 E-value=5.5e-58 Score=495.70 Aligned_cols=334 Identities=30% Similarity=0.553 Sum_probs=253.7
Q ss_pred ceeecccccceecceecccccccccCchhHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005972 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~ 324 (666)
..+|||||+++||+++... .++...|.+.+... ...+++|++|+|++|+.++.. ..|.++.
T Consensus 34 ~~~C~Rc~~l~hy~~~~~v----~~~~e~f~~~l~~i------~~~~~~il~VvD~~d~~~~~~--------~~l~~~~- 94 (368)
T 3h2y_A 34 QVICQRCFRLKHYNEIQDV----SLTDDDFLRILNGI------GKSDALVVKIVDIFDFNGSWL--------PGLHRFV- 94 (368)
T ss_dssp --------------------------CHHHHHHHHHH------HHSCCEEEEEEETTSHHHHCC--------TTHHHHS-
T ss_pred CcEEhhhhhhhccCccccC----CCCHHHHHHHHHHH------hccCcEEEEEEECCCCcccHH--------HHHHHHh-
Confidence 5799999999999998653 34566777766553 335779999999998654332 2233221
Q ss_pred hhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEE
Q 005972 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vv 404 (666)
..+|+++|+||+||++.....+.+..|++.+++..|+. ...++++||++|+|+++|++.|.++.. +.+++++
T Consensus 95 ------~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~-~~~v~~iSA~~g~gi~~L~~~l~~~~~-~~~i~~v 166 (368)
T 3h2y_A 95 ------GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK-PEDVFLISAAKGQGIAELADAIEYYRG-GKDVYVV 166 (368)
T ss_dssp ------SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC-CSEEEECCTTTCTTHHHHHHHHHHHHT-TSCEEEE
T ss_pred ------CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC-cccEEEEeCCCCcCHHHHHhhhhhhcc-cceEEEe
Confidence 24689999999999987766677889988887787752 346999999999999999999988764 4689999
Q ss_pred eecCCChhhHHHhhhccccce-eecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHHhhhh
Q 005972 405 GAQNAGKSTLINTFAKKEGVK-VSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKE 483 (666)
Q Consensus 405 G~~NVGKSTLiN~L~~~~~~~-~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~ke 483 (666)
|.+|||||||||+|++..... ...++++..||||++...+. ++.++.++||||+..+......+..+.+....+.++
T Consensus 167 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 244 (368)
T 3h2y_A 167 GCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKE 244 (368)
T ss_dssp EBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSC
T ss_pred cCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccc
Confidence 999999999999999864322 12345689999999987765 566799999999999887777777777777777899
Q ss_pred cCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCCcCCCCCCcccccccCCcc
Q 005972 484 LQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWK 563 (666)
Q Consensus 484 l~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~~L~PP~~~~~~~~l~~~~ 563 (666)
++++.|.+++++++++||+.++|++++...+ +++++++...+|.++++++.++|++|+|..|+||.+. +.+.+++|+
T Consensus 245 i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~--~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~-~~~~~~~l~ 321 (368)
T 3h2y_A 245 IKPMVFQLNEEQTLFFSGLARFDYVSGGRRA--FTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPE-ELENMPELV 321 (368)
T ss_dssp CCCEEEEECTTEEEEETTTEEEEEEESSSEE--EEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCHH-HHHTSCCEE
T ss_pred cCceEEEEcCCCEEEEcceEEEEEecCCCce--EEEEecCccccccccHHHHHHHHHHHhCCccCCCchh-hHhhccCcE
Confidence 9999999999999999999999999986544 5678888888999999999999999999999999875 367889999
Q ss_pred ceEEEEcCCCCCCccccEEEcccceEEeeccCceEEEEEeeCCeeEEEeCCCC
Q 005972 564 DRKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 564 ~~~~~i~~~~~~~~~~DIvIsGLGWisv~~~g~~~i~v~tP~Gv~v~~R~pli 616 (666)
.++|.+.+. .+||+|+|||||+|++. ++.+++|+|+||+|++|+|||
T Consensus 322 ~~~~~~~~~-----~~di~i~glgwi~v~~~-~~~~~~~~p~~v~v~~r~~~~ 368 (368)
T 3h2y_A 322 KYEFNIREP-----KTDVVFSGLGWVTVNEP-GAKIVAHVPKGVSVSLRKSLI 368 (368)
T ss_dssp EEEEECCSS-----SEEEEETTTEEEEECSS-CCEEEEEEETTCCEEEEECCC
T ss_pred EEEEEecCC-----cceEEEcccceEEEecC-ceEEEEEecCCcEEEeecCcC
Confidence 999998752 58999999999999844 789999999999999999986
No 3
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2.8e-26 Score=252.48 Aligned_cols=276 Identities=17% Similarity=0.149 Sum_probs=165.1
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh-----
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d----- 273 (666)
+..++||+||||||+| |++.+.+.++++..+.. ++.++|+.+.....++.+ |+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~----------------T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 67 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGV----------------TRDRIYSSAEWLNYDFNLIDTGGIDIGDEP 67 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC---------------------------CEEEECTTCSSCCEEEC---------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCC----------------ccceEEEEEEECCceEEEEECCCCCCcchh
Confidence 3457899999997755 99999987766555433 666666666554433332 5542
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH
Q 005972 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 ~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+..++.. ++.++|+|++|+|+++.. .+ .+..+...|++ ..+|+++|+||+|+.+....
T Consensus 68 ~~~~~~~~~~~--~~~~ad~il~vvD~~~~~--~~--~d~~~~~~l~~---------~~~pvilv~NK~D~~~~~~~--- 129 (436)
T 2hjg_A 68 FLAQIRQQAEI--AMDEADVIIFMVNGREGV--TA--ADEEVAKILYR---------TKKPVVLAVNKLDNTEMRAN--- 129 (436)
T ss_dssp HHHHHHHHHHH--HHHHCSEEEEEEETTTCS--CH--HHHHHHHHHTT---------CCSCEEEEEECCCC-----C---
T ss_pred HHHHHHHHHHH--HHHhCCEEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCCEEEEEECccCccchhh---
Confidence 33455555444 678899999999998843 22 23445555543 35689999999999754221
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC---------CCccEEEEeecCCChhhHHHhhhccccc
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG---------PRGNVWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~---------~~~~v~vvG~~NVGKSTLiN~L~~~~~~ 424 (666)
+..+ ..+| +..++++||++|.|+++|++.|.+.++ ...+|+++|.+|||||||+|+|++....
T Consensus 130 ~~~~-----~~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 130 IYDF-----YSLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp CCSS-----GGGS---SCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred HHHH-----HHcC---CCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 1111 1334 345899999999999999999987765 2358999999999999999999987654
Q ss_pred eeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChh-hHHHHHhhhhcCceeEEecCCCcccccce
Q 005972 425 KVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRD-EQKMVEIRKELQPRTYRVKARQAVHVGGL 502 (666)
Q Consensus 425 ~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~-~~~~~~~~kel~~~~f~l~~~~~l~lggl 502 (666)
.+ +..||||++.+.....+++ .+.|+||||+.........+..- ........+..+.+.+.++..+.....++
T Consensus 202 ~~-----~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~ 276 (436)
T 2hjg_A 202 IV-----SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 (436)
T ss_dssp EE-----C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred ee-----cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH
Confidence 33 5899999997654433433 68999999997655432222110 11122345667888888888776665555
Q ss_pred EEEeecccccceEEEEEecCCccccc
Q 005972 503 MRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 503 ~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.++..+.....++ +.+.||.++.
T Consensus 277 ~~~~~~~~~~~~i---iiv~NK~Dl~ 299 (436)
T 2hjg_A 277 RIAGYAHEAGKAV---VIVVNKWDAV 299 (436)
T ss_dssp HHHHHHHHTTCEE---EEEEECGGGS
T ss_pred HHHHHHHHcCCcE---EEEEECccCC
Confidence 4444444334444 3456777764
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=2.3e-25 Score=245.45 Aligned_cols=274 Identities=20% Similarity=0.142 Sum_probs=155.6
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh------H
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD------F 274 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d------~ 274 (666)
.++||+||||||+| |++.+.+.++++..+.. ++.++|+.+.....++.+ |+.. +
T Consensus 4 v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~----------------T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 67 (439)
T 1mky_A 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGV----------------TRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII 67 (439)
T ss_dssp EEEECCTTSSHHHHHHHHHC------------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCceecCCCCC----------------ccceeeEEEEECCeEEEEEECCCccccccchH
Confidence 46799999996655 99999987766665543 666666655443333322 5533 2
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH
Q 005972 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+..++.. ++.++|+|++|+|+++.. . ..+..+..+|++ ..+|+++|+||+|+.... ...+
T Consensus 68 ~~~~~~~~~~--~~~~ad~il~V~D~~~~~--~--~~d~~i~~~l~~---------~~~p~ilv~NK~D~~~~~--~~~~ 130 (439)
T 1mky_A 68 SQKMKEVTLN--MIREADLVLFVVDGKRGI--T--KEDESLADFLRK---------STVDTILVANKAENLREF--EREV 130 (439)
T ss_dssp CHHHHHHHHH--HHTTCSEEEEEEETTTCC--C--HHHHHHHHHHHH---------HTCCEEEEEESCCSHHHH--HHHT
T ss_pred HHHHHHHHHH--HHHhCCEEEEEEECCCCC--C--HHHHHHHHHHHH---------cCCCEEEEEeCCCCcccc--HHHH
Confidence 3445555444 678899999999998732 2 234456566654 235899999999985320 0111
Q ss_pred HHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC-------------CCccEEEEeecCCChhhHHHhhhcc
Q 005972 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-------------PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~-------------~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+ ..++ .+| +..++++||++|.|+++|++.|.+.++ ...+++++|.+|||||||+|+|++.
T Consensus 131 --~-~~~~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 131 --K-PELY-SLG---FGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp --H-HHHG-GGS---SCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred --H-HHHH-hcC---CCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 0 1122 445 345899999999999999998865543 1247899999999999999999987
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCccc----ccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 422 EGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMS----MRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 422 ~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~----~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
....+ ++.||||++.......+++ .+.++||||+....... ..+. ...........+.+.+.++....
T Consensus 204 ~~~~v-----~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~--~~~~~~~i~~ad~vllv~d~~~~ 276 (439)
T 1mky_A 204 ERALV-----SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS--NYRVVDSIEKADVVVIVLDATQG 276 (439)
T ss_dssp TTEEE-----CCCC------CCEEEEETTEEEEESSCSCC-----------CCSC--CHHHHHHHHHCSEEEEEEETTTC
T ss_pred ccccc-----CCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH--HHHHHHHHhhCCEEEEEEeCCCC
Confidence 64433 6899999987554433443 57889999996443221 1111 11222334556777777776554
Q ss_pred ccccceEEEeecccccceEEEEEecCCccccc
Q 005972 497 VHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 497 l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.........+.+.....++ +.+.|+.++.
T Consensus 277 ~~~~~~~i~~~l~~~~~~~---ilv~NK~Dl~ 305 (439)
T 1mky_A 277 ITRQDQRMAGLMERRGRAS---VVVFNKWDLV 305 (439)
T ss_dssp CCHHHHHHHHHHHHTTCEE---EEEEECGGGS
T ss_pred CCHHHHHHHHHHHHcCCCE---EEEEECccCC
Confidence 4333332233333333443 3456777764
No 5
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=2.1e-24 Score=238.93 Aligned_cols=292 Identities=17% Similarity=0.150 Sum_probs=172.9
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh----
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d---- 273 (666)
-+..++||+||+|||+| |++.+.+.+++...+. +++.+.|+.+......+.+ |++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g----------------~t~~~~~~~~~~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG----------------VTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------CEEEECTTCSSCCEEECCCC------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC----------------cceeEEEEEEEECCceEEEEECCCCCCcch
Confidence 35668899999996655 9999998776655443 3555666555443333332 6533
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+...+..++.. ++.++|+||+|+|+++.. . ..+..+...|++ ..+|+++|+||+|+......
T Consensus 87 ~~~~~~~~~~~~--~~~~ad~il~VvD~~~~~--~--~~d~~l~~~l~~---------~~~pvilV~NK~D~~~~~~~-- 149 (456)
T 4dcu_A 87 PFLAQIRQQAEI--AMDEADVIIFMVNGREGV--T--AADEEVAKILYR---------TKKPVVLAVNKLDNTEMRAN-- 149 (456)
T ss_dssp CCHHHHHHHHHH--HHHHCSEEEEEEESSSCS--C--HHHHHHHHHHTT---------CCSCEEEEEECC----------
T ss_pred HHHHHHHHHHHh--hHhhCCEEEEEEeCCCCC--C--hHHHHHHHHHHH---------cCCCEEEEEECccchhhhhh--
Confidence 23444444444 677899999999998732 2 234556666654 35689999999999743210
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC---------CCccEEEEeecCCChhhHHHhhhcccc
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG---------PRGNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~---------~~~~v~vvG~~NVGKSTLiN~L~~~~~ 423 (666)
+..+ ..+| +..++++||++|.|+++|++.+.+.++ ...+++++|.+|||||||+|+|++...
T Consensus 150 -~~e~-----~~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~ 220 (456)
T 4dcu_A 150 -IYDF-----YSLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER 220 (456)
T ss_dssp --CCS-----GGGS---SSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred -HHHH-----HHcC---CCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCc
Confidence 1111 1334 456889999999999999999987653 235789999999999999999997654
Q ss_pred ceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-hHHHHHhhhhcCceeEEecCCCcccccc
Q 005972 424 VKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-EQKMVEIRKELQPRTYRVKARQAVHVGG 501 (666)
Q Consensus 424 ~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~~~~~~~~kel~~~~f~l~~~~~l~lgg 501 (666)
..+ +..||||++.+.....++ ..+.|+||||+............. ........+..+...+.++..+.+....
T Consensus 221 ~~~-----~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~ 295 (456)
T 4dcu_A 221 VIV-----SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD 295 (456)
T ss_dssp EEE-----CC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred ccc-----CCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH
Confidence 443 589999998643332233 368999999998655432211110 1122234566788889999887766656
Q ss_pred eEEEeecccccceEEEEEecCCcccccccc---cccHHHHHHhhc
Q 005972 502 LMRLDLDQASVETIYVTVWASPNVSLHLGK---IENADEIWKNHV 543 (666)
Q Consensus 502 l~rld~l~~~~~~v~~~v~~s~~l~~h~tk---~e~a~e~~~k~~ 543 (666)
..++..+.....++ +.+.||+++.... .+.+.+..++++
T Consensus 296 ~~~~~~~~~~~~~~---ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 337 (456)
T 4dcu_A 296 KRIAGYAHEAGKAV---VIVVNKWDAVDKDESTMKEFEENIRDHF 337 (456)
T ss_dssp HHHHHHHHHTTCEE---EEEEECGGGSCCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCE---EEEEEChhcCCCchHHHHHHHHHHHHhc
Confidence 55555555444554 3456788764322 244455555544
No 6
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.87 E-value=5.6e-22 Score=206.85 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=108.1
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHH
Q 005972 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+++.+ .+..+|+|++|+|++++.++....+.+ ++ ..+|+++|+||+||++. ..++.|++
T Consensus 15 ~~~~~--~l~~aDvVl~VvDAr~p~~~~~~~l~~----~l-----------~~kp~ilVlNK~DL~~~----~~~~~~~~ 73 (282)
T 1puj_A 15 REVTE--KLKLIDIVYELVDARIPMSSRNPMIED----IL-----------KNKPRIMLLNKADKADA----AVTQQWKE 73 (282)
T ss_dssp HHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHH----HC-----------SSSCEEEEEECGGGSCH----HHHHHHHH
T ss_pred HHHHH--HHhhCCEEEEEEeCCCCCccCCHHHHH----HH-----------CCCCEEEEEECcccCCH----HHHHHHHH
Confidence 34444 678899999999999998776533222 11 24689999999999874 23677876
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC-------------CCccEEEEeecCCChhhHHHhhhcccccee
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-------------PRGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~-------------~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~ 426 (666)
++ ++.|+ .++++||+++.|+++|++.|.+.++ ...+++++|.||||||||||+|++.....
T Consensus 74 ~~-~~~g~----~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~- 147 (282)
T 1puj_A 74 HF-ENQGI----RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAK- 147 (282)
T ss_dssp HH-HTTTC----CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred HH-HhcCC----cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceee-
Confidence 65 34554 3899999999999999988766532 34579999999999999999999876544
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCc
Q 005972 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 427 ~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
+++.||||++...+. ++.++.++||||+..+..
T Consensus 148 ----~~~~~g~T~~~~~~~--~~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 148 ----TGDRPGITTSQQWVK--VGKELELLDTPGILWPKF 180 (282)
T ss_dssp ---------------CCEE--ETTTEEEEECCCCCCSCC
T ss_pred ----cCCCCCeeeeeEEEE--eCCCEEEEECcCcCCCCC
Confidence 468999999986544 567899999999998764
No 7
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.80 E-value=2e-20 Score=193.08 Aligned_cols=142 Identities=24% Similarity=0.295 Sum_probs=104.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++|+|++++..+....++ + + .+|.++|+||+||++.. .++.|++++. +.|
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~l~--l---l------------~k~~iivlNK~DL~~~~----~~~~~~~~~~-~~g 75 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYGVD--F---S------------RKETIILLNKVDIADEK----TTKKWVEFFK-KQG 75 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTTSC--C---T------------TSEEEEEEECGGGSCHH----HHHHHHHHHH-HTT
T ss_pred HHhhCCEEEEEeeCCCCCcCcChHHH--h---c------------CCCcEEEEECccCCCHH----HHHHHHHHHH-HcC
Confidence 56789999999999998877543222 1 1 24789999999998743 3677876553 456
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG 446 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~ 446 (666)
++ + ++||+++.|+++|++.|.+.+ .+++++|.||||||||||+|++..... +++.||||++...+.
T Consensus 76 ~~----v-~iSa~~~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~~~-----~~~~~g~T~~~~~~~- 141 (262)
T 3cnl_A 76 KR----V-ITTHKGEPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRASS-----VGAQPGITKGIQWFS- 141 (262)
T ss_dssp CC----E-EECCTTSCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC---------------CCSCEEE-
T ss_pred Ce----E-EEECCCCcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccccc-----cCCCCCCccceEEEE-
Confidence 43 7 999999999999999887643 589999999999999999999876443 357899999876544
Q ss_pred EeCCceEEEECCCCCCCCc
Q 005972 447 ILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 447 ~l~~~~~liDTPGi~~~~~ 465 (666)
++.++.++||||+..+..
T Consensus 142 -~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 142 -LENGVKILDTPGILYKNI 159 (262)
T ss_dssp -CTTSCEEESSCEECCCCC
T ss_pred -eCCCEEEEECCCcccCcC
Confidence 567899999999998765
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=6.2e-17 Score=170.77 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=99.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++|+|+++|..+.. .+++.+.. ... ..+|++||+||+||++.......+..|.+.+ +..|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~-~~~---------~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-~~~g 150 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVL-VEA---------NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-RNIG 150 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHH-HHT---------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-HHHT
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHH-HHH---------CCCCEEEEEECCccCchhhhHHHHHHHHHHH-HhCC
Confidence 5689999999999998775542 34443321 111 3457899999999997632002356776544 4556
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeeccccc--CCCCceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S--~~PGTT~~~~~~ 444 (666)
++ ++++||.++.|+++|++.+. +..++++|.+|||||||+|+|++.....++.++.. .-.+||+....+
T Consensus 151 ~~----v~~~sa~~~~g~~~L~~~~~-----G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~ 221 (307)
T 1t9h_A 151 YD----VYLTSSKDQDSLADIIPHFQ-----DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI 221 (307)
T ss_dssp CC----EEECCHHHHTTCTTTGGGGT-----TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE
T ss_pred Ce----EEEEecCCCCCHHHHHhhcC-----CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh
Confidence 53 99999999999999887653 45889999999999999999998765544433321 222466654333
Q ss_pred eeEeCCceEEEECCCCCCCCc
Q 005972 445 GGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~ 465 (666)
. ++ ...++||||+.....
T Consensus 222 ~--~~-~g~v~dtpg~~~~~l 239 (307)
T 1t9h_A 222 H--TS-GGLVADTPGFSSLEF 239 (307)
T ss_dssp E--ET-TEEEESSCSCSSCCC
T ss_pred h--cC-CEEEecCCCcccccc
Confidence 2 33 578999999987664
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.63 E-value=1e-15 Score=160.79 Aligned_cols=154 Identities=24% Similarity=0.291 Sum_probs=103.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..+++|+|++|+|++++..++ ..+++++. .+.. ...|+++|+||+||++... ...+..|.+. ++..|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~-~~l~~~l~-~~~~---------~~~~~ilV~NK~DL~~~~~-v~~~~~~~~~-~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNN-YLLDNMLV-VYEY---------FKVEPVIVFNKIDLLNEEE-KKELERWISI-YRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCH-HHHHHHHH-HHHH---------TTCEEEEEECCGGGCCHHH-HHHHHHHHHH-HHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCH-HHHHHHHH-HHHh---------CCCCEEEEEEcccCCCccc-cHHHHHHHHH-HHHCC
Confidence 568999999999999875442 23344332 2332 3468899999999986421 0113445433 34566
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG--TT~~~~~~ 444 (666)
+ .++++||++|.|+++|++.+. +..++++|.+|||||||+|+|+ .....++.++.+..-| ||+....+
T Consensus 143 ~----~~~~~SA~~g~gi~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~ 212 (302)
T 2yv5_A 143 Y----DVLKVSAKTGEGIDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI 212 (302)
T ss_dssp C----EEEECCTTTCTTHHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE
T ss_pred C----eEEEEECCCCCCHHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE
Confidence 4 389999999999999998876 3478899999999999999999 6555455444322234 66554333
Q ss_pred eeEeCCceEEEECCCCCCCCc
Q 005972 445 GGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~ 465 (666)
. ++....++||||+.....
T Consensus 213 ~--~~~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 213 P--FGKGSFVGDTPGFSKVEA 231 (302)
T ss_dssp E--ETTTEEEESSCCCSSCCG
T ss_pred E--cCCCcEEEECcCcCcCcc
Confidence 2 345679999999986654
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.56 E-value=6.9e-15 Score=158.15 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=100.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++ ||+++|..+ +..+++++... .. ...|++||+||+||++... ...+..|+..+ +..|
T Consensus 127 i~anvD~v~i-v~a~~P~~~-~~~i~r~L~~a-~~---------~~~~~iivlNK~DL~~~~~-~~~~~~~~~~y-~~~G 192 (358)
T 2rcn_A 127 IAANIDQIVI-VSAILPELS-LNIIDRYLVGC-ET---------LQVEPLIVLNKIDLLDDEG-MDFVNEQMDIY-RNIG 192 (358)
T ss_dssp EEECCCEEEE-EEESTTTCC-HHHHHHHHHHH-HH---------HTCEEEEEEECGGGCCHHH-HHHHHHHHHHH-HTTT
T ss_pred HHhcCCEEEE-EEeCCCCCC-HHHHHHHHHHH-Hh---------cCCCEEEEEECccCCCchh-HHHHHHHHHHH-HhCC
Confidence 5689999985 577786544 33344443221 11 1246799999999997532 12366787654 5778
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcccc-ceeecccccCCCC----ceeEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEG-VKVSKLTEAPIPG----TTLGI 441 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~-~~~~~~t~S~~PG----TT~~~ 441 (666)
++ ++++||+++.|+++|...+. +..++++|.+|||||||+|.|++... ..++.++. .+| ||+..
T Consensus 193 ~~----v~~~Sa~~~~gl~~L~~~~~-----G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~--~~G~g~~tt~~~ 261 (358)
T 2rcn_A 193 YR----VLMVSSHTQDGLKPLEEALT-----GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN--VSGLGQHTTTAA 261 (358)
T ss_dssp CC----EEECBTTTTBTHHHHHHHHT-----TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCC
T ss_pred Cc----EEEEecCCCcCHHHHHHhcC-----CCEEEEECCCCccHHHHHHHHhccccccccCCccc--cCCCCccceEEE
Confidence 64 99999999999999987653 45789999999999999999998765 44443322 223 44443
Q ss_pred EEEeeEeCCceEEEECCCCCCCCc
Q 005972 442 LRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 442 ~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
.. +.++....++||||+.....
T Consensus 262 ~i--~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 262 RL--YHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp EE--EECTTSCEEEECHHHHTCCC
T ss_pred EE--EEECCCCEecCcccHHHhhh
Confidence 22 23556678999999987543
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.56 E-value=7.7e-15 Score=153.92 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=99.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|++++..++ ..+++.+ ..++. ...|++||+||+||.+... ...+..|++.+. ..
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l-~~~~~---------~~~piilv~NK~DL~~~~~-v~~~~~~~~~~~-~~- 146 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFL-VLAEK---------NELETVMVINKMDLYDEDD-LRKVRELEEIYS-GL- 146 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHH-HHHHH---------TTCEEEEEECCGGGCCHHH-HHHHHHHHHHHT-TT-
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHH-HHHHH---------CCCCEEEEEeHHHcCCchh-HHHHHHHHHHHh-hh-
Confidence 567899999999999875332 2233322 22222 3468999999999975421 122455554321 11
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeeccccc--CCCCceeEEEEE
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S--~~PGTT~~~~~~ 444 (666)
. .++.+||++|.|+++|+..+.. ..++++|.+|+|||||+|.|.+......+.+... .-..+|+....+
T Consensus 147 ~----~~~~~SAktg~gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~ 217 (301)
T 1u0l_A 147 Y----PIVKTSAKTGMGIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL 217 (301)
T ss_dssp S----CEEECCTTTCTTHHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE
T ss_pred C----cEEEEECCCCcCHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE
Confidence 2 3899999999999999988763 4788999999999999999998665444433321 122355443222
Q ss_pred eeEeCCceEEEECCCCCCCCc
Q 005972 445 GGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~ 465 (666)
. +.....++||||+.....
T Consensus 218 ~--~~~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 218 K--FDFGGYVVDTPGFANLEI 236 (301)
T ss_dssp E--CTTSCEEESSCSSTTCCC
T ss_pred E--cCCCCEEEECcCCCccCC
Confidence 2 334678999999987764
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.46 E-value=3.7e-14 Score=149.07 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=105.8
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccc-cccccc---Cch---
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNE-VAENLI---PDF--- 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~-~~~~~i---P~~--- 272 (666)
+||++. +|+||+|||+| |++.+.+.++++.++++ ++.+..+..... ..++.+ |+.
T Consensus 10 ~g~v~i-vG~~nvGKSTLin~l~g~~~~i~s~~~~t----------------T~~~~~~~~~~~~~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 10 VGYVAI-VGKPNVGKSTLLNNLLGTKVSIISPKAGT----------------TRMRVLGVKNIPNEAQIIFLDTPGIYEP 72 (308)
T ss_dssp EEEEEE-ECSTTSSHHHHHHHHHTSCCSCCCSSSCC----------------CCSCEEEEEEETTTEEEEEEECCCCCCC
T ss_pred CCEEEE-ECCCCCcHHHHHHHHhCCCccccCCCCCc----------------eeeEEEEEEecCCCCeEEEEECcCCCcc
Confidence 577776 99999996655 99999997766555432 334433433332 233332 543
Q ss_pred ----hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHH-HHHHHHhhhhhhhhcCCCcEEEEEECCCCC-C
Q 005972 273 ----DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSL-FKKLEEAKDDAKLSKKLPKLVLVGTKVDLL-P 346 (666)
Q Consensus 273 ----d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I-~~~L~~~~~~~~~~~~~kpvILVlNKiDLL-p 346 (666)
.+.+.|...+.. .+.++|+|++|+|+.+..+ .. +..+ ++.+.. ...|+++|+||+|++ +
T Consensus 73 ~~~~~l~~~~~~~~~~--~l~~aD~il~VvD~~~~~~--~~--~~~~~~~~l~~---------~~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 73 KKSDVLGHSMVEIAKQ--SLEEADVILFMIDATEGWR--PR--DEEIYQNFIKP---------LNKPVIVVINKIDKIGP 137 (308)
T ss_dssp CTTCHHHHHHHHHHHH--HHHHCSEEEEEEETTTBSC--HH--HHHHHHHHTGG---------GCCCEEEEEECGGGSSS
T ss_pred ccchhHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCC--ch--hHHHHHHHHHh---------cCCCEEEEEECccCCCC
Confidence 344556555555 6788999999999987432 21 2222 343332 246899999999998 4
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 347 SQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
... +..+++.+.+.++ .+..++++||++|.|+++|++.|.+.++++
T Consensus 138 ~~~----~~~~~~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 138 AKN----VLPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GGG----GHHHHHHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHH----HHHHHHHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 443 4445555555554 145699999999999999999998876643
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.35 E-value=2.6e-13 Score=142.53 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=99.0
Q ss_pred CceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh----
Q 005972 202 GFTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~sl-Ln~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d---- 273 (666)
|+ .++||+||+|||+ +|++.+.+.++++.++++ ++.+..+.+.....++. .|++.
T Consensus 8 g~-V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~t----------------Tr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GF-VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQT----------------TRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EE-EEEECSTTSSHHHHHHHHHTSCCSCCCSSSCC----------------CCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred CE-EEEECCCCCCHHHHHHHHhCCceeeecCCCCc----------------eeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 45 4569999999665 499999997755444332 33333333322222322 25432
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+.+.+...+.. ++.++|++++|+|+.+... ..+..+++.++... ...|+++|+||+|+.....
T Consensus 71 ~l~~~~~~~~~~--~l~~ad~il~VvD~~~~~~----~~~~~i~~~l~~~~-------~~~p~ilV~NK~Dl~~~~~--- 134 (301)
T 1wf3_A 71 ALGEFMDQEVYE--ALADVNAVVWVVDLRHPPT----PEDELVARALKPLV-------GKVPILLVGNKLDAAKYPE--- 134 (301)
T ss_dssp HHHHHHHHHHHH--HTSSCSEEEEEEETTSCCC----HHHHHHHHHHGGGT-------TTSCEEEEEECGGGCSSHH---
T ss_pred HHHHHHHHHHHH--HHhcCCEEEEEEECCCCCC----hHHHHHHHHHHhhc-------CCCCEEEEEECcccCCchH---
Confidence 34455555555 6788999999999987532 22445555554320 2468999999999975421
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.+..+++.+ .+ +..++++||++|.|+++|++.|...+++
T Consensus 135 ~~~~~~~~~---~~---~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 135 EAMKAYHEL---LP---EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHT---ST---TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHh---cC---cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 033333222 22 5569999999999999999999887654
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.35 E-value=3.8e-13 Score=141.03 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=102.6
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh--HHH
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD--FDR 276 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d--~~~ 276 (666)
...++||+||+|||+| |++.+.+.++++.+++ .++.+..|.+.....++. .|++. ...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~----------------tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~ 72 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ----------------TTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 72 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS----------------CCSSCEEEEEEETTEEEEEESSSSCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCC----------------cceeeEEEEEEECCeeEEEEECcCCCccchh
Confidence 3456799999996655 9999998765443322 234444444443333333 37765 222
Q ss_pred HHH----HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChH
Q 005972 277 VIA----TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 277 ~L~----~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
.+. ..+.. ++..+|++++|+|+.++. ..+..++..+.. ...|+++|+||+|+... ..
T Consensus 73 ~l~~~~~~~~~~--~l~~~D~vl~Vvd~~~~~-----~~~~~i~~~l~~---------~~~P~ilvlNK~D~~~~---~~ 133 (301)
T 1ega_A 73 AINRLMNKAASS--SIGDVELVIFVVEGTRWT-----PDDEMVLNKLRE---------GKAPVILAVNKVDNVQE---KA 133 (301)
T ss_dssp HHHHHHTCCTTS--CCCCEEEEEEEEETTCCC-----HHHHHHHHHHHS---------SSSCEEEEEESTTTCCC---HH
T ss_pred hHHHHHHHHHHH--HHhcCCEEEEEEeCCCCC-----HHHHHHHHHHHh---------cCCCEEEEEECcccCcc---HH
Confidence 333 23344 678999999999997721 223445554442 34689999999999752 22
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.+..+++.+.+.++ +..++++||+++.|+++|++.|...++++
T Consensus 134 ~~~~~l~~l~~~~~---~~~~i~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 134 DLLPHLQFLASQMN---FLDIVPISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHHHHHTTSC---CSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHhcC---cCceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 35555555554455 44699999999999999999999876643
No 15
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=3.9e-12 Score=121.55 Aligned_cols=110 Identities=23% Similarity=0.172 Sum_probs=63.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++. . ...+..++..... .......|+++|+||+|+............| .+..+.
T Consensus 85 ~~~~d~ii~v~d~~~~~-----s-~~~~~~~~~~i~~--~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 152 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRD-----T-FVKLDNWLNELET--YCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSM 152 (195)
T ss_dssp HTTCCEEEEEEETTCHH-----H-HHTHHHHHHHHTT--CCSCSCCEEEEEEECTTSSSCCSCHHHHHHH----HHHTTC
T ss_pred hccCCEEEEEEECcCHH-----H-HHHHHHHHHHHHH--hcCcCCCcEEEEEECCcCcccccCHHHHHHH----HHHcCC
Confidence 45689999999998732 1 1112222222110 0011346899999999997655443333433 344553
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKST 413 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKST 413 (666)
.++.+||++|.|+++|++.|.+.+......+--+.+|+||||
T Consensus 153 ----~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 153 ----LFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred ----EEEEecCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 388999999999999999998765544444555777999997
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.14 E-value=3.6e-10 Score=108.22 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=58.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.+... .....++.++.. ...|+++|+||+|+.+... +........+.+...
T Consensus 104 ~~~~~~i~v~d~~~~~~----~~~~~~~~~~~~---------~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 104 EELKAVVQIVDLRHAPS----NDDVQMYEFLKY---------YGIPVIVIATKADKIPKGK----WDKHAKVVRQTLNID 166 (195)
T ss_dssp TTEEEEEEEEETTSCCC----HHHHHHHHHHHH---------TTCCEEEEEECGGGSCGGG----HHHHHHHHHHHHTCC
T ss_pred hcCCEEEEEEECCCCCC----HHHHHHHHHHHH---------cCCCEEEEEECcccCChHH----HHHHHHHHHHHHccc
Confidence 44589999999987431 122334455543 3468999999999987543 222112222212211
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
....++.+||++|.|+++|++.|.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 134589999999999999999987654
No 17
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.09 E-value=6.7e-11 Score=116.13 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=61.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHh--C
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA--G 365 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~--~ 365 (666)
...+|+|++|+|+.+.. . ..+..++..+.. ...|+++|+||+|+++.......+..+.+.+... .
T Consensus 113 ~~~~d~vi~v~d~~~~~--~--~~~~~~~~~l~~---------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPL--T--ELDRRMIEWFAP---------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp CTTEEEEEEEEETTSCC--C--HHHHHHHHHHGG---------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCEEEEEEeCCCCC--C--HHHHHHHHHHHh---------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 35588999999998732 1 234445555543 2458999999999986433111122222222111 0
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
+......++.+||++|.|+++|++.|.+.++.
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 10113469999999999999999999887654
No 18
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.07 E-value=8.8e-10 Score=104.90 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|+|++|+|+.+.. ......+..++.. ...|+++|+||+|+.+..... .....++.+....+
T Consensus 102 ~~~~~~vi~v~d~~~~~----~~~~~~~~~~~~~---------~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~~~~~~~- 166 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPP----QDSDLMMVEWMKS---------LNIPFTIVLTKMDKVKMSERA-KKLEEHRKVFSKYG- 166 (195)
T ss_dssp CTTEEEEEEEEETTSCC----CHHHHHHHHHHHH---------TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHHSSC-
T ss_pred CcCceEEEEEecCCCCC----CHHHHHHHHHHHH---------cCCCEEEEEEChhcCChHHHH-HHHHHHHHHHhhcC-
Confidence 35679999999997742 1223344455544 246899999999998654321 12222233333333
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
...++.+||++|.|+++|++.|.+.++
T Consensus 167 --~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 --EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp --CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 234999999999999999999987654
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.05 E-value=4.5e-10 Score=123.37 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=59.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.+.. ... +..++..+.. ..+|+++|+||+|+++..... ...+.+...+.+.
T Consensus 254 ~~~~ad~~llv~D~~~~~--s~~--~~~~~~~~~~---------~~~~iiiv~NK~Dl~~~~~~~--~~~~~~~~~~~l~ 318 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGI--IEQ--DKRIAGYAHE---------AGKAVVIVVNKWDAVDKDEST--MKEFEENIRDHFQ 318 (436)
T ss_dssp HHHHCSEEEEEEETTTCC--CHH--HHHHHHHHHH---------TTCEEEEEEECGGGSCCCTTH--HHHHHHHHHHHCG
T ss_pred HHHhCCEEEEEEcCCcCC--cHH--HHHHHHHHHH---------cCCcEEEEEECccCCCcchHH--HHHHHHHHHHhcc
Confidence 456799999999998843 222 2233343332 346899999999998754321 1222222223322
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
......++++||++|.|+++|++.|.+.+
T Consensus 319 ~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 319 FLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred cCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 11123499999999999999998887653
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.04 E-value=1.8e-10 Score=108.97 Aligned_cols=106 Identities=20% Similarity=0.128 Sum_probs=63.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. . ...+..++..... .......|+++|+||+|+.... .....+..+ .+..
T Consensus 74 ~~~~~~~~i~v~d~~~~~-----s-~~~~~~~~~~~~~--~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 141 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIK-----S-FEVIKVIHGKLLD--MVGKVQIPIMLVGNKKDLHMERVISYEEGKAL----AESW 141 (181)
T ss_dssp GTTTCSEEEEEEETTCHH-----H-HHHHHHHHHHHHH--HC----CCEEEEEECTTCTTTCCSCHHHHHHH----HHHT
T ss_pred HHhcCCEEEEEEECCCHH-----H-HHHHHHHHHHHHH--hcCCCCCCEEEEEECccchhcceecHHHHHHH----HHHh
Confidence 456799999999998732 1 1112222221110 0011346899999999997543 333333333 3455
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKST 413 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKST 413 (666)
+. .++.+||++|.|+++|++.|.+.+... -|..++||||
T Consensus 142 ~~----~~~~~Sa~~~~~v~~l~~~l~~~~~~~-----~~~~~~gkss 180 (181)
T 3t5g_A 142 NA----AFLESSAKENQTAVDVFRRIILEAEKM-----DGACSQGKSS 180 (181)
T ss_dssp TC----EEEECCTTSHHHHHHHHHHHHHHHHTC----------CCBSC
T ss_pred CC----cEEEEecCCCCCHHHHHHHHHHHHHHh-----cCCcccCcCC
Confidence 64 389999999999999999987765432 2678889987
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.04 E-value=3.2e-10 Score=104.58 Aligned_cols=85 Identities=26% Similarity=0.194 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... .....+..++.. ...|+++|+||+|+..... .+..+ . .++
T Consensus 76 ~~~~~~~~i~v~d~~~~~~----~~~~~~~~~~~~---------~~~p~ilv~nK~Dl~~~~~---~~~~~----~-~~~ 134 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELT----QADYEVAEYLRR---------KGKPVILVATKVDDPKHEL---YLGPL----Y-GLG 134 (161)
T ss_dssp HTTTCSEEEEEEESSSCCC----HHHHHHHHHHHH---------HTCCEEEEEECCCSGGGGG---GCGGG----G-GGS
T ss_pred HHHhCCEEEEEEECCCccc----HhHHHHHHHHHh---------cCCCEEEEEECcccccchH---hHHHH----H-hCC
Confidence 4567999999999988421 223444455543 2358999999999976421 12222 1 334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+..++.+||++|.|+++|++.|.+.+
T Consensus 135 ---~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 135 ---FGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ---SCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---CCCeEEEecccCCChHHHHHHHHHhC
Confidence 33489999999999999999988754
No 22
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.02 E-value=7.4e-10 Score=102.84 Aligned_cols=157 Identities=17% Similarity=0.059 Sum_probs=75.8
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHHH
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATR 281 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~~ 281 (666)
|-.+++|.||+|||+| |++.+.+........ ...+.... ...+.... -.-+.+|+..-.+.+...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~-~~i~D~~g~~~~~~~~~~ 68 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAA----------GHTYDRSI---VVDGEEAS-LMVYDIWEQDGGRWLPGH 68 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC--------------------CEEEEEE---EETTEEEE-EEEEECC-----------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCcc----------ccceEEEE---EECCEEEE-EEEEECCCCccchhhhhh
Confidence 4456799999997755 999877644222211 11111111 11111000 000123544322222222
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHH
Q 005972 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRH 360 (666)
Q Consensus 282 l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~ 360 (666)
....+|++++|+|+.++.. ...+.. ++..+.... .....|+++|+||+||.+... .......
T Consensus 69 -----~~~~~~~~i~v~d~~~~~s--~~~~~~-~~~~~~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~---- 131 (166)
T 3q72_A 69 -----CMAMGDAYVIVYSVTDKGS--FEKASE-LRVQLRRAR-----QTDDVPIILVGNKSDLVRSREVSVDEGRA---- 131 (166)
T ss_dssp ---------CCEEEEEEETTCHHH--HHHHHH-HHHHHHHCC--------CCCEEEEEECTTCCSSCCSCHHHHHH----
T ss_pred -----hhhhCCEEEEEEECCCHHH--HHHHHH-HHHHHHHhc-----CCCCCCEEEEEeccccccccccCHHHHHH----
Confidence 3467899999999987421 111111 222222210 013468999999999986543 2222222
Q ss_pred HHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+....+. .++.+||++|.|+++|++.|.+.
T Consensus 132 ~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 132 CAVVFDC----KFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHTTC----EEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHhCC----cEEEeccCCCCCHHHHHHHHHHH
Confidence 3345554 38999999999999999988764
No 23
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.02 E-value=7.7e-10 Score=109.84 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=59.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.+.... .......++..+... . ...|+++|+||+|+.............++.+....+.
T Consensus 107 ~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~l~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 177 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGL-TIKEQINLFYSIKSV------F-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN- 177 (228)
T ss_dssp TSSEEEEEEEETTCTTSS-CHHHHHHHHHHHHTC------C--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS-
T ss_pred ccccEEEEEEecccccCc-chHHHHHHHHHHHHh------h-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC-
Confidence 457899999999986432 212122233333321 0 2468999999999986543222222233344444441
Q ss_pred CcceEEEEecccCcChhhHHHHHHhh
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...++.+||++|.|+++|++.|.+.
T Consensus 178 -~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 178 -PIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp -CEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -CceEEEEecccCCCHHHHHHHHHHH
Confidence 2358999999999999999988764
No 24
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.01 E-value=7.6e-10 Score=123.26 Aligned_cols=157 Identities=13% Similarity=0.001 Sum_probs=78.6
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchhHHH
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDFDR 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d~~~ 276 (666)
.|+..++||+||+||| ++|++.+.+..+++..+.+ ++......+......+. .|++.-..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gt----------------T~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGT----------------TRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC----------------------------------CEEEEETTEEEEEEC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc----------------eEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 4777888999999966 5599999876666555433 11111111111111111 25432211
Q ss_pred -----HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh
Q 005972 277 -----VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 277 -----~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
...+.... ....+|+|++|+|+.++... .. ......++... ...|+|+|+||+|+.+...
T Consensus 296 ~~ve~~gi~~~~~--~~~~aD~vl~VvD~s~~~s~--~~-~~~~~~~l~~l--------~~~piIvV~NK~Dl~~~~~-- 360 (476)
T 3gee_A 296 EEIEHEGIRRSRM--KMAEADLILYLLDLGTERLD--DE-LTEIRELKAAH--------PAAKFLTVANKLDRAANAD-- 360 (476)
T ss_dssp ------------C--CCSSCSEEEEEEETTTCSSG--GG-HHHHHHHHHHC--------TTSEEEEEEECTTSCTTTH--
T ss_pred hHHHHHHHHHHHh--hcccCCEEEEEEECCCCcch--hh-hHHHHHHHHhc--------CCCCEEEEEECcCCCCccc--
Confidence 11122233 56789999999999985422 11 11122233321 2468999999999986543
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
... +.+.+. + +..++.+||++|.|+++|++.|.+.+.
T Consensus 361 --~~~--~~l~~~-~---~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 361 --ALI--RAIADG-T---GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp --HHH--HHHHHH-H---TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred --hhH--HHHHhc-C---CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 111 112221 1 124899999999999999999987643
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=104.43 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=58.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.+... ....... +.+..+
T Consensus 86 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 152 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQES--FNNV-KQWLQEIDRY------ASENVNKLLVGNKCDLTTKKVVDYTTAKE----FADSLG 152 (196)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECTTCTTTCCSCHHHHHH----HHHHTT
T ss_pred HhhCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------cCCCCCEEEEEECcccccccccCHHHHHH----HHHHcC
Confidence 456899999999987321 1111 1222333322 113568999999999986543 2222333 345566
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+ ++.+||++|.|++++++.|.+.
T Consensus 153 ~~----~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 153 IP----FLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp CC----EEEECTTTCTTHHHHHHHHHHH
T ss_pred Cc----EEEEeCCCCCCHHHHHHHHHHH
Confidence 43 8999999999999999888664
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.98 E-value=8.6e-10 Score=102.21 Aligned_cols=96 Identities=23% Similarity=0.172 Sum_probs=58.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ...+. .++..+... .....|+++|+||+|+.+............+.+.+..+.
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQS--FIKAR-HWVKELHEQ------ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL 143 (170)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHHH-HHHHHHHHH------SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC
T ss_pred hccCcEEEEEEecCChHH--HHHHH-HHHHHHHHh------cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC
Confidence 456899999999987321 11111 122222221 113568999999999986421111112222233344453
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.++.+||++|.|+++|++.|.+.+.
T Consensus 144 ----~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 144 ----LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999987654
No 27
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.98 E-value=3e-10 Score=124.83 Aligned_cols=113 Identities=19% Similarity=0.129 Sum_probs=70.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++++|+|+.+.. .. .+..+...+.. ..+|+++|+||+|++.... .....+.+...+.+.
T Consensus 260 ~i~~ad~vllv~d~~~~~--~~--~~~~i~~~l~~---------~~~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGI--TR--QDQRMAGLMER---------RGRASVVVFNKWDLVVHRE--KRYDEFTKLFREKLY 324 (439)
T ss_dssp HHHHCSEEEEEEETTTCC--CH--HHHHHHHHHHH---------TTCEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCG
T ss_pred HHhhCCEEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCCEEEEEECccCCCchh--hHHHHHHHHHHHHhc
Confidence 345689999999998732 22 12334444433 3468999999999986432 012223222223332
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
......++++||++|.|+++|++.|.+.+... ..-=+|+.+|.++...
T Consensus 325 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~--------~~~i~t~~ln~~l~~~ 372 (439)
T 1mky_A 325 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASY--------TTKVPSSAINSALQKV 372 (439)
T ss_dssp GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH--------TCCCCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh--------cccCCHHHHHHHHHHH
Confidence 11133589999999999999999987654321 0111689999998754
No 28
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.96 E-value=3.9e-09 Score=101.13 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+...+...+... .....|+++|+||+|+..... ...+.+.+....-.
T Consensus 88 ~~~~d~ii~v~D~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~ 155 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEK--IEASKNELHNLLDKP------QLQGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQ 155 (188)
T ss_dssp HTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCG------GGTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCC
T ss_pred HccCCEEEEEEECCCHHH--HHHHHHHHHHHHhCc------ccCCCCEEEEEECCCCccCCC----HHHHHHHhChhhhc
Confidence 457999999999987431 122222222222110 013468999999999986533 12222211111000
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.....++.+||++|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 156 DREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01224789999999999999999987654
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.95 E-value=1.2e-09 Score=120.59 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=61.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|+|+.+. .. ..+..++..+.. ..+|+|+|+||+|+.+... ....+..+++......
T Consensus 274 ~~~~ad~~llviD~~~~--~~--~~~~~~~~~~~~---------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEG--II--EQDKRIAGYAHE---------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHCSEEEEEEETTTC--CC--HHHHHHHHHHHH---------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred HHhhCCEEEEEEeCCCC--cC--HHHHHHHHHHHH---------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence 45679999999999873 22 233445554443 3468999999999987543 2223334433322211
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+ ...++++||++|.|+++|++.|.+.+
T Consensus 341 ~---~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 341 D---YAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp T---TSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred C---CCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 2 23499999999999999999887654
No 30
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.95 E-value=4.1e-10 Score=116.22 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=58.8
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.++. . ...+...+... ..|+++|+||+|+.........+..+ .+.+|.+
T Consensus 84 ~~~d~ii~VvD~~~~~-----~-~~~~~~~l~~~---------~~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg~~ 144 (274)
T 3i8s_A 84 GDADLLINVVDASNLE-----R-NLYLTLQLLEL---------GIPCIVALNMLDIAEKQNIRIEIDAL----SARLGCP 144 (274)
T ss_dssp TCCSEEEEEEEGGGHH-----H-HHHHHHHHHHH---------TCCEEEEEECHHHHHHTTEEECHHHH----HHHHTSC
T ss_pred cCCCEEEEEecCCChH-----H-HHHHHHHHHhc---------CCCEEEEEECccchhhhhHHHHHHHH----HHhcCCC
Confidence 5799999999998721 1 22333444432 35899999999997543211112332 3445654
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
++++||++|.|+++|++.|.+.++.
T Consensus 145 ----~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 145 ----VIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ----EEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred ----EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999887553
No 31
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.95 E-value=6.2e-10 Score=116.86 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=89.8
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCCcccccCChhh
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
+.+.|+++|.+|||||||+|+|++..... ++..||||++.+...... +.++.++||||+..+... ..+...-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i-----~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~-~~l~~~~ 82 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI-----ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS-DVLGHSM 82 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC-----CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT-CHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc-----cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc-hhHHHHH
Confidence 34789999999999999999999876443 368999999876543333 336889999999876521 1221111
Q ss_pred -HHHHHhhhhcCceeEEecCCCcccccceEE-EeecccccceEEEEEecCCccccc--ccccccHHHHHHhhcC
Q 005972 475 -QKMVEIRKELQPRTYRVKARQAVHVGGLMR-LDLDQASVETIYVTVWASPNVSLH--LGKIENADEIWKNHVG 544 (666)
Q Consensus 475 -~~~~~~~kel~~~~f~l~~~~~l~lggl~r-ld~l~~~~~~v~~~v~~s~~l~~h--~tk~e~a~e~~~k~~g 544 (666)
.......+..+...|+++............ ++.++....+++ .+.|+++.. ........+.+.+.++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi---lV~NK~Dl~~~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI---VVINKIDKIGPAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE---EEEECGGGSSSGGGGHHHHHHHHHHCT
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE---EEEECccCCCCHHHHHHHHHHHHHhcc
Confidence 122345677889999999887766665554 566655444543 455777753 2223333444555554
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.95 E-value=3.4e-09 Score=99.80 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=59.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+... .....|+++|+||+|+..... ....+..| .+..+
T Consensus 82 ~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~------~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~ 148 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQAS---FERAKKWVQELQAQ------GNPNMVMALAGNKSDLLDARKVTAEDAQTY----AQENG 148 (181)
T ss_dssp HTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHH------SCTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH---HHHHHHHHHHHHHh------cCCCCcEEEEEECCcccccccCCHHHHHHH----HHHcC
Confidence 456899999999987321 11112222323221 113568999999999985432 33333433 34455
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 149 ~----~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 149 L----FFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp C----EEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred C----EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4 3899999999999999999987654
No 33
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.94 E-value=2.6e-09 Score=99.20 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+... .....|+++|+||+|+.... ........ +.+..+
T Consensus 76 ~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~------~~~~~~iilv~nK~Dl~~~~~v~~~~~~~----~~~~~~ 142 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEET---FSTLKNWVRELRQH------GPPSIVVAIAGNKCDLTDVREVMERDAKD----YADSIH 142 (170)
T ss_dssp HTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHH------SCTTSEEEEEEECTTCGGGCCSCHHHHHH----HHHHTT
T ss_pred CcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHh------CCCCCcEEEEEECCccccccccCHHHHHH----HHHHcC
Confidence 456899999999987321 11112233333332 11346899999999998643 22233333 334555
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.++
T Consensus 143 ~----~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 A----IFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred C----EEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 3 3899999999999999999987643
No 34
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.94 E-value=5.7e-10 Score=114.28 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=85.6
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCch--------
Q 005972 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF-------- 272 (666)
Q Consensus 205 ~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~-------- 272 (666)
.+++|.||+|||+| |++.+.+.. ......++.....+.+......+. +|+.
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~-----------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 66 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQR-----------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAE 66 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEE-----------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC----
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-----------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCccccccccc
Confidence 46799999997765 999887611 111222333333333221111111 2433
Q ss_pred --hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC
Q 005972 273 --DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS 350 (666)
Q Consensus 273 --d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~ 350 (666)
.....+.+... ....+|+|++|+|+.++ .. ...+..++.. ...|+++|+||+|+......
T Consensus 67 ~~~~~e~i~~~~~---~~~~~d~vi~VvDas~~-----~~-~~~l~~~l~~---------~~~pvilv~NK~Dl~~~~~~ 128 (256)
T 3iby_A 67 GISQDEQIAAQSV---IDLEYDCIINVIDACHL-----ER-HLYLTSQLFE---------LGKPVVVALNMMDIAEHRGI 128 (256)
T ss_dssp --CHHHHHHHHHH---HHSCCSEEEEEEEGGGH-----HH-HHHHHHHHTT---------SCSCEEEEEECHHHHHHTTC
T ss_pred CCCHHHHHHHHHH---hhCCCCEEEEEeeCCCc-----hh-HHHHHHHHHH---------cCCCEEEEEEChhcCCcCCc
Confidence 22223433322 12579999999999872 11 2233333332 24689999999999854432
Q ss_pred hHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 351 PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 351 ~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...+.. +.+.+|.+ ++++||++|.|+++|++.|.+.
T Consensus 129 ~~~~~~----l~~~lg~~----vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 129 SIDTEK----LESLLGCS----VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECHHH----HHHHHCSC----EEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHH----HHHHcCCC----EEEEECCCCCCHHHHHHHHHhh
Confidence 111222 23445654 9999999999999999999875
No 35
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.93 E-value=9e-09 Score=95.27 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=56.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++.. + ..+...+...+... .....|+++|+||+|+..... ...+.+.+....-
T Consensus 64 ~~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 131 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRER-V-NEAREELMRMLAED------ELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSL 131 (164)
T ss_dssp HTTTCSEEEEEEETTCGGG-H-HHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGC
T ss_pred HhccCCEEEEEEECCCHHH-H-HHHHHHHHHHHhch------hhcCCeEEEEEECcCCcCCCC----HHHHHHHhCcccc
Confidence 3467999999999987431 1 12222222221110 013568999999999976432 2222211111100
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
...--.++.+||++|.|+++|++.|.+.+.
T Consensus 132 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 132 RHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp SSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 000124889999999999999999987643
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.93 E-value=1.8e-09 Score=100.96 Aligned_cols=91 Identities=21% Similarity=0.168 Sum_probs=56.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+ ..++..+.... .....|+++|+||+|+.+.. ........|. ...+
T Consensus 75 ~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~l~~~~-----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~ 142 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGS-F-ESA-SELRIQLRRTH-----QADHVPIILVGNKADLARCREVSVEEGRACA----VVFD 142 (175)
T ss_dssp TTSCSEEEEEEETTCHHH-H-HHH-HHHHHHHHHCC---------CCEEEEEECTTCTTTCCSCHHHHHHHH----HHHT
T ss_pred cccCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhh-----ccCCCCEEEEEEChhhccccccCHHHHHHHH----HHcC
Confidence 456899999999987421 1 111 12222233210 01246899999999998643 3333333332 3334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 143 ~----~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 143 C----KFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp S----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----eEEEEecCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 37
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.93 E-value=2e-09 Score=99.97 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=59.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+............+. +..+.
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (170)
T 1g16_A 73 YRGAMGIILVYDITDERT--FTNI-KQWFKTVNEH------ANDEAQLLLVGNKSDMETRVVTADQGEALA----KELGI 139 (170)
T ss_dssp HTTEEEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------cCCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCC
Confidence 457899999999987421 1111 1222223221 113468999999999965554434444443 34454
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+ ++.+||++|.|+++|++.|.+.+
T Consensus 140 ~----~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 140 P----FIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp C----EEECBTTTTBSHHHHHHHHHHHH
T ss_pred e----EEEEECCCCCCHHHHHHHHHHHH
Confidence 3 89999999999999999887653
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=5.2e-09 Score=98.38 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=59.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+..... .......| .+..
T Consensus 80 ~~~~~d~ii~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 146 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKAS--FDNI-QAWLTEIHEY------AQHDVALMLLGNKVDSAHERVVKREDGEKL----AKEY 146 (180)
T ss_dssp CGGGCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECCSTTSCCCSCHHHHHHH----HHHH
T ss_pred HccCCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------CCCCCcEEEEEECcccCcccccCHHHHHHH----HHHc
Confidence 5678999999999987321 1111 1222223221 113468999999999986432 33333333 3344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+.+ ++.+||++|.|+++|++.|.+.+
T Consensus 147 ~~~----~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 147 GLP----FMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCe----EEEEeCCCCCCHHHHHHHHHHHH
Confidence 543 89999999999999999887653
No 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.92 E-value=3.3e-09 Score=100.37 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=59.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.........+..+. +..+.
T Consensus 73 ~~~~~~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~-----~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (189)
T 4dsu_A 73 MRTGEGFLCVFAINNTKS--FEDI-HHYREQIKRVK-----DSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGI 140 (189)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHT-----TCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTC
T ss_pred HhcCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCC
Confidence 456899999999987321 1111 12222222211 113468999999999987665544444443 34454
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+ ++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 141 P----FIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp C----EEECCTTTCTTHHHHHHHHHHH
T ss_pred e----EEEEeCCCCCCHHHHHHHHHHH
Confidence 3 8999999999999999988764
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.91 E-value=3.4e-09 Score=98.11 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=58.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+.+.. ........| ....+
T Consensus 76 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 142 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEES--FARAK-NWVKELQRQ------ASPNIVIALSGNKADLANKRAVDFQEAQSY----ADDNS 142 (170)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHHH-HHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred ccCCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------cCCCCcEEEEEECccCccccccCHHHHHHH----HHHcC
Confidence 457899999999987421 11111 222222221 11346899999999997533 222333333 33445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.++
T Consensus 143 ~----~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 L----LFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3 3889999999999999999987654
No 41
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.91 E-value=3.9e-10 Score=107.25 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=56.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+..... ...++..+.... ....|+++|+||+||...... |. +..+
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~----~~~~~~~~~~~~------~~~~p~ilv~NK~Dl~~~~~~------~~----~~~~ 139 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD----PAEIWPEFIARL------PAKLPITVVRNKADITGETLG------MS----EVNG 139 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS----HHHHCHHHHHHS------CTTCCEEEEEECHHHHCCCCE------EE----EETT
T ss_pred HHHhCCEEEEEEECCCCCCHH----HHHHHHHHHHhc------ccCCCEEEEEECccCCcchhh------hh----hccC
Confidence 356799999999998865422 122333333311 124689999999999643221 10 1112
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
..++.+||++|.|+++|++.|.+.+.
T Consensus 140 ----~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 140 ----HALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ----EEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ----CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 24889999999999999999987643
No 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.90 E-value=3.7e-09 Score=102.53 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+............|. +..+
T Consensus 89 ~~~~~d~ii~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 155 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERT--FTNI-KQWFKTVNEH------ANDEAQLLLVGNKSDMETRVVTADQGEALA----KELG 155 (213)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------TTTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------cCCCCCEEEEEECCCCcccccCHHHHHHHH----HHcC
Confidence 3457999999999987321 1111 1222323221 113468999999999965544433344443 3445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+ ++.+||++|.|+++|++.|.+.
T Consensus 156 ~~----~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 156 IP----FIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp CC----EEECBTTTTBSSHHHHHHHHHH
T ss_pred CE----EEEEeCCCCCCHHHHHHHHHHH
Confidence 43 8999999999999999988764
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.90 E-value=4.3e-09 Score=98.49 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.... .....+..| .+..
T Consensus 84 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 150 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRST--YNHL-SSWLTDARNL------TNPNTVIILIGNKADLEAQRDVTYEEAKQF----AEEN 150 (179)
T ss_dssp HHHTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEeCcCHHH--HHHH-HHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 3456899999999987421 1111 1222223321 11346899999999997532 333334444 3455
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 151 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 151 GL----LFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp TC----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 54 38999999999999999988764
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.90 E-value=3.6e-09 Score=98.42 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=57.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+...+ ..+... ......|+++|+||+|+... .........+ .+..+
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~~~~~-~~~~~~-----~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRS--FSKVPETL-LRLRAG-----RPHHDLPVILVGNKSDLARSREVSLEEGRHL----AGTLS 140 (169)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHHHHH-HHHHHH-----STTSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCChHH--HHHHHHHH-HHHHhc-----ccCCCCCEEEEeeCcchhhcccCCHHHHHHH----HHHcC
Confidence 456899999999987321 11122222 222211 01125689999999999743 3333333333 34556
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 141 C----KHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----cEEEecCccCCCHHHHHHHHHHH
Confidence 4 48999999999999999988764
No 45
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.89 E-value=9.5e-09 Score=95.59 Aligned_cols=96 Identities=21% Similarity=0.194 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHh-C
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA-G 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~-~ 365 (666)
...++|++++|+|+.++.. .......+...+... .....|+++|+||+|+.+... ...+.+.+... .
T Consensus 71 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 138 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDR--IGISKSELVAMLEEE------ELRKAILVVFANKQDMEQAMT----SSEMANSLGLPAL 138 (171)
T ss_dssp GCTTCSEEEEEEETTCCTT--HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC----HHHHHHHHTGGGC
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHHhch------hhCCCEEEEEEECCCCcCCCC----HHHHHHHhCchhc
Confidence 4568999999999988542 222233332222211 013468999999999986543 22222221111 1
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
... --.++.+||++|.|+++|++.|.+.+
T Consensus 139 ~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 139 KDR-KWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TTS-CEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCC-ceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 100 11589999999999999999987654
No 46
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.89 E-value=1.4e-09 Score=104.30 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=84.7
Q ss_pred CCCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccc---ccCchhHH
Q 005972 200 LDGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFDFD 275 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP~~d~~ 275 (666)
...+..+++|.+|+|||+| +++.+.+...+.. .......... +......+ .+|+.+-.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---------~~t~~~~~~~---------~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---------TATVGYNVET---------FEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CC---------CCCSSEEEEE---------EEETTEEEEEEEECCSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---------ccccceeEEE---------EEeCCEEEEEEECCCCHhH
Confidence 3456668899999997655 9998877332100 0011111110 11111111 12554322
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhh--hcCCCcEEEEEECCCCCCCCCChHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKL--SKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~--~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
..+.. . ....+|++|+|+|+.+... ...+...+...+..... .+. .....|+++|+||+||..... ...
T Consensus 77 ~~~~~---~--~~~~~d~ii~v~D~~~~~s--~~~~~~~~~~~~~~~~~-~~~~~~~~~~piilv~NK~Dl~~~~~-~~~ 147 (199)
T 4bas_A 77 RGLWE---T--YYDNIDAVIFVVDSSDHLR--LCVVKSEIQAMLKHEDI-RRELPGGGRVPFLFFANKMDAAGAKT-AAE 147 (199)
T ss_dssp GGGGG---G--GCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTSHHH-HSBCTTSCBCCEEEEEECTTSTTCCC-HHH
T ss_pred HHHHH---H--HHhcCCEEEEEEECCcHHH--HHHHHHHHHHHHhChhh-hhcccccCCCCEEEEEECcCCCCCCC-HHH
Confidence 22211 1 4568999999999998431 12222233222211000 000 001468999999999987643 222
Q ss_pred HHHHHHHHH--HhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRA--KAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~--k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+...+.... +..+ ..++.+||++|.|+++|++.|.+.
T Consensus 148 ~~~~~~~~~~~~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 148 LVEILDLTTLMGDHP----FVIFASNGLKGTGVHEGFSWLQET 186 (199)
T ss_dssp HHHHHTHHHHHTTSC----EEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHhcchhhccCCe----eEEEEeeCCCccCHHHHHHHHHHH
Confidence 322221111 2222 258999999999999999998764
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.89 E-value=3.2e-09 Score=97.82 Aligned_cols=91 Identities=24% Similarity=0.220 Sum_probs=56.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... ...+... +..+.... .....|+++|+||+|+.+.. ........+ .+..+
T Consensus 72 ~~~~~~~i~v~d~~~~~s--~~~~~~~-~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQS--FQDIKPM-RDQIIRVK-----RYEKVPVILVGNKVDLESEREVSSSEGRAL----AEEWG 139 (167)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHHHH-HHHHHHHT-----TTSCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHT
T ss_pred hccCCEEEEEEeCCCHHH--HHHHHHH-HHHHHHhc-----CCCCCCEEEEEECCcccccccCCHHHHHHH----HHHhC
Confidence 456899999999987321 1111111 12222110 11346899999999997543 333333333 33445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+ ++.+||++|.|+++|++.|.+.
T Consensus 140 ~~----~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 CP----FMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp SC----EEEECTTCHHHHHHHHHHHHHH
T ss_pred CC----EEEecCCCCcCHHHHHHHHHHH
Confidence 43 8999999999999999998764
No 48
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=6e-09 Score=99.93 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=58.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... + ..+ ..++..+... .....|+++|+||+|+.... ........+ .+..
T Consensus 92 ~~~~~d~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 158 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEES-F-NAV-QDWATQIKTY------SWDNAQVILVGNKCDMEEERVVPTEKGQLL----AEQL 158 (191)
T ss_dssp HHTTCCEEEEEEETTCHHH-H-HTH-HHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred HHccCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHHHH----HHHc
Confidence 3457999999999987321 1 111 2233333321 11356899999999997543 332333333 3444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 159 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 159 GF----DFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp TC----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988764
No 49
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.88 E-value=5.9e-09 Score=99.16 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=59.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+............+..++.... ......|+++|+||+||... .....+..+ .+..+
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~----~~~~~~piilv~NK~Dl~~~-~~~~~~~~~----~~~~~ 164 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG----LTLDDVPIVIQVNKRDLPDA-LPVEMVRAV----VDPEG 164 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT----CCTTSSCEEEEEECTTSTTC-CCHHHHHHH----HCTTC
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc----cccCCCCEEEEEEchhcccc-cCHHHHHHH----HHhcC
Confidence 3457999999999985311101112223334443321 01134689999999999765 333334443 33445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ..++.+||++|.|+++|++.|.+.
T Consensus 165 ~---~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 165 K---FPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp C---SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred C---ceEEEEecCCCcCHHHHHHHHHHH
Confidence 3 248999999999999999988654
No 50
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.88 E-value=9.5e-10 Score=117.57 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..++++|+|+|+.++.+..+......+...|..+.. .. ..+|+++|+||+|+.... ..++.+ .+.+.
T Consensus 233 ~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~--~l--~~~p~ilV~NK~Dl~~~~---e~~~~l----~~~l~ 301 (342)
T 1lnz_A 233 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL--RL--TERPQIIVANKMDMPEAA---ENLEAF----KEKLT 301 (342)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS--ST--TTSCBCBEEECTTSTTHH---HHHHHH----HHHCC
T ss_pred HHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh--hh--cCCCEEEEEECccCCCCH---HHHHHH----HHHhh
Confidence 34668999999999875433444433445555554310 00 246899999999997532 123333 23333
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. ...++++||+++.|+++|++.|.+.+.
T Consensus 302 ~--~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 302 D--DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp S--CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred c--CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 1 124889999999999999999987654
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.88 E-value=7.4e-09 Score=99.94 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+.. ++ .. ...++..+... .....|+++|+||+|+.... .....+..| .+.+
T Consensus 77 ~~~~~d~ii~v~d~~~~~-s~-~~-~~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 143 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEE-SF-NA-VQDWSTQIKTY------SWDNAQVLLVGNKCDMEDERVVSSERGRQL----ADHL 143 (203)
T ss_dssp TGGGCSEEEEEEETTCHH-HH-HH-HHHHHHHHHHH------SCSSCEEEEEEECTTCTTSCCSCHHHHHHH----HHHH
T ss_pred hhcCCCEEEEEEECcCHH-HH-HH-HHHHHHHHHHh------cCCCCCEEEEEECcccCcccccCHHHHHHH----HHHC
Confidence 466899999999998732 11 11 11222223221 11356899999999998643 333333444 3344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 144 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 144 GF----EFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp TC----EEEECBTTTTBSSHHHHHHHHHH
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988754
No 52
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.87 E-value=5.4e-09 Score=116.17 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=87.2
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchhHHH
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDFDR 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d~~~ 276 (666)
..+..++||+|||||| ++|++.+.+... ..+ +....++.+......+. +|+....+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--------------~~~------T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--------------TIP------TVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--------------CCC------CSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--------------cCC------ccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 3567788999999966 459887765210 000 22222333222222222 25433222
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+ ... ...++|+||+|+|+.+... ...+...+...+... .....|+|||+||+||..... ...+.
T Consensus 381 ~~---~~~--~~~~ad~~i~V~D~~~~~s--~~~~~~~~~~~~~~~------~~~~~p~ilv~NK~Dl~~~~~-~~~~~- 445 (497)
T 3lvq_E 381 PL---WRH--YYTGTQGLIFVVDCADRDR--IDEARQELHRIINDR------EMRDAIILIFANKQDLPDAMK-PHEIQ- 445 (497)
T ss_dssp GG---GGG--GGTTCCEEEEEEETTCGGG--HHHHHHHHHHHHTSG------GGTTCEEEEEEECCSSSSCCC-HHHHH-
T ss_pred HH---HHH--HhccCCEEEEEEECcchhH--HHHHHHHHHHHhhhh------hcCCCcEEEEEECCCCCcCCC-HHHHH-
Confidence 22 122 5678999999999988431 122222222222211 013468999999999976433 11122
Q ss_pred HHHHHHHhCCCC----CcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 357 WVRHRAKAGGAP----KLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 357 wl~~~~k~~g~~----~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+.++.. ....++.+||++|.|+++|++.|.+.+.
T Consensus 446 ------~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 446 ------EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp ------HHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred ------HHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222221 1224899999999999999999987643
No 53
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=6.6e-09 Score=99.90 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=60.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.+. ......+..| .+..+
T Consensus 93 ~~~~d~iilV~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~----~~~~~ 159 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDS--FYTL-KKWVKELKEH------GPENIVMAIAGNKCDLSDIREVPLKDAKEY----AESIG 159 (192)
T ss_dssp HTTCSEEEEEEETTCTHH--HHHH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHTTT
T ss_pred hccCCEEEEEEeCCCHHH--HHHH-HHHHHHHHHh------CCCCCcEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 456899999999987421 1111 2222333321 1135689999999999753 3333334433 34555
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 160 ~----~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 160 A----IVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred C----EEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 4 3899999999999999999987654
No 54
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=9.9e-09 Score=98.22 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=60.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+.... ..+ ..++..+..... .....|+++|+||+|+.+..........+. ...+.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~--~~~-~~~~~~i~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 145 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSL--EEL-GPIYKLIVQIKG----SVEDIPVMLVGNKCDETQREVDTREAQAVA----QEWKC 145 (199)
T ss_dssp HHHCSEEEEEEETTCHHHH--HTT-HHHHHHHHHHHS----CGGGSCEEEEEECTTCSSCSSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECcCHHHH--HHH-HHHHHHHHHHhc----CCCCCCEEEEEECccCCccccCHHHHHHHH----HHhCC
Confidence 4568999999999874211 111 122233332210 002358999999999987655433344433 33443
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.++.+||++|.|+++|++.|.+.+..
T Consensus 146 ----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 146 ----AFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp ----EEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred ----eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 38999999999999999999876543
No 55
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.85 E-value=1.4e-08 Score=98.66 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=84.7
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchhHHHHHHH
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIAT 280 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d~~~~L~~ 280 (666)
-+-.+++|.||+|||+| |++.+.+...... .+ ....++.+.... .++... -.-+.+|+..-...+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--~t-------~~~~~~~~~~~~--~~~~~~-l~i~Dt~G~~~~~~~~~ 96 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQG--ST-------IGVDFTMKTLEI--QGKRVK-LQIWDTAGQERFRTITQ 96 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------CEEEEEEEE--TTEEEE-EEEECCTTCGGGHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCC--CC-------cceEEEEEEEEE--CCEEEE-EEEEECCCcHhHHHHHH
Confidence 35568899999997755 9988776431110 00 000111111100 010000 00012355432222322
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHH
Q 005972 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVR 359 (666)
Q Consensus 281 ~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~ 359 (666)
. ...++|++++|+|+.+... ...+. .++..+... .....|++||+||+||... ......+..|
T Consensus 97 ~-----~~~~~d~iilv~D~~~~~s--~~~~~-~~~~~i~~~------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-- 160 (201)
T 2hup_A 97 S-----YYRSANGAILAYDITKRSS--FLSVP-HWIEDVRKY------AGSNIVQLLIGNKSDLSELREVSLAEAQSL-- 160 (201)
T ss_dssp H-----HHTTCSEEEEEEETTBHHH--HHTHH-HHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHH--
T ss_pred H-----HHhhCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------cCCCCCEEEEEECCccccccccCHHHHHHH--
Confidence 2 3457999999999987321 11111 222223221 1134689999999999853 3333334444
Q ss_pred HHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+..+. ..++.+||++|.|+++|++.|.+.
T Consensus 161 --~~~~~~---~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 161 --AEHYDI---LCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp --HHHTTC---SEEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHHcCC---CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345553 358999999999999999988764
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.85 E-value=6.5e-09 Score=96.14 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.+... ...+. .++..+.... .....|+++|+||+|+.... .....+..+ .+.++
T Consensus 72 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQST--FNDLQ-DLREQILRVK-----DTEDVPMILVGNKCDLEDERVVGKEQGQNL----ARQWC 139 (167)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHH-HHHHHHHHHH-----CCSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH--HHHHH-HHHHHHHHhh-----CcCCCcEEEEEECccccccccCCHHHHHHH----HHHcc
Confidence 346899999999987421 01111 1222222211 11356899999999997543 233333433 34442
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...++.+||++|.|+++|++.|.+.
T Consensus 140 ---~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 140 ---NCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp ---SCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1248999999999999999998764
No 57
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.85 E-value=1.7e-08 Score=96.13 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=59.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.+.......+..+. +..+
T Consensus 89 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 156 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKS--FADI-NLYREQIKRVK-----DSDDVPMVLVGNKCDLPTRTVDTKQAHELA----KSYG 156 (190)
T ss_dssp -CTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----TCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHT
T ss_pred hhCcCCEEEEEEECcCHHH--HHHH-HHHHHHHHHHh-----CCCCCeEEEEEECCcCCcccCCHHHHHHHH----HHcC
Confidence 4567999999999987421 1111 12222232211 112468999999999987555444444443 3445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+ ++.+||++|.|+++|++.|.+.
T Consensus 157 ~~----~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 157 IP----FIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp CC----EEECCTTTCTTHHHHHHHHHHH
T ss_pred Ce----EEEEeCCCCCCHHHHHHHHHHH
Confidence 43 8999999999999999988754
No 58
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.85 E-value=1.6e-08 Score=94.82 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=58.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.+... + ..+ ..++..+..... .....+++++|+||+|+... .........|. +..+
T Consensus 77 ~~~~d~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~~~---~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 146 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQS-F-ENL-EDWYTVVKKVSE---ESETQPLVALVGNKIDLEHMRTIKPEKHLRFC----QENG 146 (178)
T ss_dssp HTTCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHHHH---HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHHhc---ccCCCCeEEEEEEccccccccccCHHHHHHHH----HHcC
Confidence 457899999999987431 1 111 122233332110 01123448999999999753 23333344443 3445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 147 ~----~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 147 F----SSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred C----cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 3899999999999999999877543
No 59
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.85 E-value=3.3e-09 Score=118.37 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++|+|+|+.+... . . +..+++.+ ..+|+|+|+||+||.+. .....+..+ . ..+
T Consensus 320 ~~~~aD~vl~VvD~s~~~s--~-~-~~~il~~l-----------~~~piivV~NK~DL~~~-~~~~~~~~~----~-~~~ 378 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLD--E-E-DRKILERI-----------KNKRYLVVINKVDVVEK-INEEEIKNK----L-GTD 378 (482)
T ss_dssp HHHHCSEEEEEEETTSCCC--H-H-HHHHHHHH-----------TTSSEEEEEEECSSCCC-CCHHHHHHH----H-TCS
T ss_pred HhhcccEEEEEecCCCCCC--H-H-HHHHHHHh-----------cCCCEEEEEECcccccc-cCHHHHHHH----h-cCC
Confidence 3467999999999987532 1 1 22333322 23589999999999754 222223322 1 122
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 379 ~----~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 379 R----HMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp T----TEEEEEGGGTCCHHHHHHHHHHH
T ss_pred C----cEEEEECCCCCCHHHHHHHHHHH
Confidence 2 38999999999999999999864
No 60
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.85 E-value=5e-09 Score=120.11 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=87.0
Q ss_pred CCCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHH--HHHhhhcCCce------------eecccccceecceecccc
Q 005972 200 LDGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKA--REAQKEKGEVT------------VCARCHSLRNYGQVKNEV 264 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a--~~a~~~~~~~~------------vCqRC~rLr~ygkv~~~~ 264 (666)
-+-+-.+++|+||+|||+| |+|.+....+..+...+ +++........ .-+..+....+..+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 3567788899999996655 99987754333321100 00000000000 001111111222222222
Q ss_pred cccc---cCchh-HHHHHHHHhcCcccccccCEEEEEEecCCC--CCC---CcHHHHHHHHHHHHHhhhhhhhhcCCCcE
Q 005972 265 AENL---IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDF--DGM---FPKRAAKSLFKKLEEAKDDAKLSKKLPKL 335 (666)
Q Consensus 265 ~~~~---iP~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df--~gs---~p~~i~~~I~~~L~~~~~~~~~~~~~kpv 335 (666)
.++. .|++. |.+.+ .. .+..+|++|+|||+.+. ... .+.. ...+..+... +.+++
T Consensus 245 ~~~~iiDTPG~e~f~~~~----~~--~~~~aD~~llVVDa~~g~~e~~~~~~~qt--~e~l~~~~~l--------gi~~i 308 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNA----IM--GISQADMAILCVDCSTNAFESGFDLDGQT--KEHMLLASSL--------GIHNL 308 (611)
T ss_dssp CEEEEEECCSSSCHHHHH----TT--TSSCCSEEEEEEECSHHHHHTTCCTTSHH--HHHHHHHHTT--------TCCEE
T ss_pred ceEEEEECCCCcccHHHH----HH--HHhhcCceEEEEECCCCcccccchhhhHH--HHHHHHHHHc--------CCCeE
Confidence 2222 37653 33322 23 56789999999999862 111 1221 1111222211 33569
Q ss_pred EEEEECCCCCCCCC-ChHHHHHHHHHHHHhCCCCC-cceEEEEecccCcChhhH
Q 005972 336 VLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 336 ILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~GveeL 387 (666)
|+|+||+|+.+... ....+...+..+...+|... ...++++||++|.|+.+|
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999986321 11223344444444555321 235899999999999865
No 61
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.84 E-value=4.4e-09 Score=99.98 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=59.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++.. ...+...+...+... .....|+++|+||+|+..... ...+..++.. ....
T Consensus 82 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~--~~~~ 150 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQR--MQDCQRELQSLLVEE------RLAGATLLIFANKQDLPGALS-CNAIQEALEL--DSIR 150 (186)
T ss_dssp GCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTG--GGCC
T ss_pred HhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHhCh------hcCCCcEEEEEeCccCCCCCC-HHHHHHHhCh--hhcc
Confidence 5678999999999988431 122222222222110 113468999999999976533 2222222100 0010
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
. ..-.++.+||++|.|+++|++.|.+.+.++
T Consensus 151 ~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 151 S-HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp S-SCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred C-CceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 0 112588999999999999999998765543
No 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.84 E-value=5.5e-09 Score=97.11 Aligned_cols=92 Identities=25% Similarity=0.312 Sum_probs=59.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....+|.+++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+... .........| .+..
T Consensus 75 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 141 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDS--FQKV-KNWVKELRKML------GNEICLCIVGNKIDLEKERHVSIQEAESY----AESV 141 (170)
T ss_dssp SSTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH------GGGSEEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhc------CCCCeEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 4678999999999987321 1111 12222232211 134689999999999864 3333334443 3455
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+. .++.+||++|.|+++|++.|.+.+
T Consensus 142 ~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 142 GA----KHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TC----EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CC----eEEEecCCCCCCHHHHHHHHHHHH
Confidence 53 388999999999999999987643
No 63
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.84 E-value=1.4e-08 Score=93.23 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=59.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.+.......+..+. +..+.
T Consensus 72 ~~~~~~~i~v~d~~~~~~--~~~~-~~~~~~i~~~~-----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKS--FEDI-HQYREQIKRVK-----DSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGI 139 (166)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----TCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCC
Confidence 346899999999987321 0111 22222222211 112468999999999987555444444443 34454
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+ ++.+||++|.|+++|++.|.+.+
T Consensus 140 ~----~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 140 P----YIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp C----EEEECTTTCTTHHHHHHHHHHHH
T ss_pred e----EEEecCCCCCCHHHHHHHHHHHH
Confidence 3 99999999999999999987643
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.84 E-value=1.7e-08 Score=95.95 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=56.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++.. ...+ ..++..+... ...|+++|+||+|+.........+..|+ +..+.
T Consensus 114 ~~~~d~~i~v~D~~~~~s--~~~~-~~~~~~i~~~--------~~~piilv~NK~D~~~~~~~~~~~~~~~----~~~~~ 178 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNT--LDRA-KTWVNQLKIS--------SNYIIILVANKIDKNKFQVDILEVQKYA----QDNNL 178 (208)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHH--------SCCEEEEEEECTTCC-CCSCHHHHHHHH----HHTTC
T ss_pred hcCCCEEEEEEECCCHHH--HHHH-HHHHHHHHhh--------CCCcEEEEEECCCcccccCCHHHHHHHH----HHcCC
Confidence 456899999999987321 1111 1122222221 2368999999999433344434444443 44553
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||++|.|+++|++.|.+.
T Consensus 179 ----~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 179 ----LFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp ----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred ----cEEEEecCCCCCHHHHHHHHHHH
Confidence 48999999999999999988754
No 65
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.84 E-value=4.8e-09 Score=98.55 Aligned_cols=84 Identities=29% Similarity=0.287 Sum_probs=54.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.++|++++|+|+.++. ... .++..+.+ ...|+++|+||+|+............|. +.++.
T Consensus 80 ~~~~~~i~v~D~~~~~-----~~~-~~~~~~~~---------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~- 139 (165)
T 2wji_A 80 EKPDLVVNIVDATALE-----RNL-YLTLQLME---------MGANLLLALNKMDLAKSLGIEIDVDKLE----KILGV- 139 (165)
T ss_dssp HCCSEEEEEEETTCHH-----HHH-HHHHHHHH---------TTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTS-
T ss_pred CCCCEEEEEecCCchh-----HhH-HHHHHHHh---------cCCCEEEEEEchHhccccChhhHHHHHH----HHhCC-
Confidence 3689999999998631 211 12222322 2468999999999864221111133332 33343
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.++.+||++|.|+++|++.|.+.+
T Consensus 140 ---~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 ---KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ---CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ---CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 389999999999999999987653
No 66
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.5e-09 Score=115.62 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=62.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.+|++||+||||||||+|+|++.. . .++++|+||++.+.-...+ +.++.++||||+........ .....+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~-----~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~---~~g~~~ 143 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-S-----EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR---GRGKQV 143 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-C-----CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-C-----cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh---HHHHHH
Confidence 379999999999999999999754 2 2368999999976543333 34789999999986533211 113445
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
+...+..+...++++...
T Consensus 144 l~~i~~ad~il~vvD~~~ 161 (376)
T 4a9a_A 144 IAVARTCNLLFIILDVNK 161 (376)
T ss_dssp HHHHHHCSEEEEEEETTS
T ss_pred HHHHHhcCccccccccCc
Confidence 556677788888888754
No 67
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.84 E-value=1.4e-08 Score=98.02 Aligned_cols=96 Identities=18% Similarity=0.144 Sum_probs=56.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ...+...+...+... .....|+++|+||+|+..... ...+.+.+....-.
T Consensus 94 ~~~~d~iilv~D~~~~~s--~~~~~~~l~~~~~~~------~~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRER--VQESADELQKMLQED------ELRDAVLLVFANKQDMPNAMP----VSELTDKLGLQHLR 161 (192)
T ss_dssp HHTCCEEEEEEETTCGGG--HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCS
T ss_pred hccCCEEEEEEECCCHHH--HHHHHHHHHHHhccc------ccCCCeEEEEEECCCCCCCCC----HHHHHHHhCccccc
Confidence 457899999999988531 122222222222110 013568999999999976432 22222111111000
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
...-.++.+||++|.|+++|++.|.+.+
T Consensus 162 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 162 SRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0012488999999999999999987654
No 68
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.83 E-value=1.1e-08 Score=96.71 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=57.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+.. ++..+.... .....|+++|+||+|+... ......+..| .+..+
T Consensus 87 ~~~~d~~i~v~d~~~~~s--~~~~~~-~~~~~~~~~-----~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~----~~~~~ 154 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKAS--FEHVDR-FHQLILRVK-----DRESFPMILVANKVDLMHLRKVTRDQGKEM----ATKYN 154 (183)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHHH-HHHHHHHHH-----TSSCCCEEEEEECTTCSTTCCSCHHHHHHH----HHHHT
T ss_pred HhcCCEEEEEEECCCHHH--HHHHHH-HHHHHHHhc-----CCCCCcEEEEEECCCchhccCcCHHHHHHH----HHHhC
Confidence 456899999999987421 111121 222222210 1134689999999999863 3333334444 34445
Q ss_pred CCCcceEEEEecc-cCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSAR-KDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAk-kg~GveeLl~~I~~~ 394 (666)
.+ ++.+||+ +|.|++++++.|.+.
T Consensus 155 ~~----~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 155 IP----YIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp CC----EEEEBCSSSCBSHHHHHHHHHHH
T ss_pred Ce----EEEeccCCCCCCHHHHHHHHHHH
Confidence 43 8999999 999999999988764
No 69
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=2.3e-08 Score=95.40 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.+.. + ...+...+...+... .....|+++|+||+|+..... ...+..++... .+..
T Consensus 81 ~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~--~~~~ 149 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRE-R-ISVTREELYKMLAHE------DLRKAGLLIFANKQDVKECMT-VAEISQFLKLT--SIKD 149 (187)
T ss_dssp HTTCCEEEEEEETTCTT-T-HHHHHHHHHHHHTSG------GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGG--GCCS
T ss_pred hcCCCEEEEEEeCCCHH-H-HHHHHHHHHHHHhch------hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChh--hhcC
Confidence 45799999999999853 2 222233222222110 013468999999999976432 22233332110 0110
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. --.++.+||++|.|+++|++.|.+.+.
T Consensus 150 ~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 150 H-QWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp S-CEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred C-CcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0 125889999999999999999987654
No 70
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.83 E-value=3.2e-09 Score=103.24 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHh--
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA-- 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~-- 364 (666)
...++|++++|+|+.+.. ++ ..+...+...++.. .....|+++|+||+|+.. ......+..++......
T Consensus 89 ~~~~~d~~i~v~D~~~~~-s~-~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~ 159 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHE-RL-LESKEELDSLMTDE------TIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTG 159 (198)
T ss_dssp GGGGCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG------GGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCC
T ss_pred HHhcCCEEEEEEECCCHH-HH-HHHHHHHHHHHhCc------ccCCCcEEEEEECCCccc-cCCHHHHHHHhCccccccc
Confidence 456899999999998743 11 12222222222110 013468999999999975 33334444443211000
Q ss_pred CC---C----CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 365 GG---A----PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g---~----~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+ + .....++.+||++|.|++++++.|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 160 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 00 0 012358899999999999999998764
No 71
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.83 E-value=5e-09 Score=98.21 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=57.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. . ...+..++..... .....|+++|+||+|+.+... .......+ ....
T Consensus 78 ~~~~~d~~i~v~d~~~~~-----s-~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 143 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAE-----S-FVNVKRWLHEINQ----NCDDVCRILVGNKNDDPERKVVETEDAYKF----AGQM 143 (181)
T ss_dssp GGTTCSEEEEEEETTCHH-----H-HHHHHHHHHHHHH----HCTTSEEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred HhccCCEEEEEEECCCHH-----H-HHHHHHHHHHHHH----hCCCCCEEEEEECCCCchhcccCHHHHHHH----HHHc
Confidence 456799999999998732 1 1122223322211 113468999999999986443 22333333 2344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+ ++.+||++|.|+++|++.|.+.
T Consensus 144 ~~~----~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 144 GIQ----LFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp TCC----EEECBTTTTBSHHHHHHHHHHH
T ss_pred CCe----EEEEECCCCCCHHHHHHHHHHH
Confidence 543 8999999999999999988764
No 72
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.83 E-value=1.2e-08 Score=108.02 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=85.1
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchhHHHH
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDFDRV 277 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d~~~~ 277 (666)
.+..+++|.||+|||+| +++.+.+.. ..+ + +....+..+......+. +|+......
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~-----------------~~~-p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTI-P--TIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCE-----------------EEE-E--ETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCC-----------------Ccc-c--ccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 45678899999997755 888766521 000 0 12222222222111222 255332222
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHH
Q 005972 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
+... ....+|++|+|+|+.+... ...+...+...+.... ....|+|||+||+||..... ...+
T Consensus 225 ~~~~-----~~~~ad~vilV~D~~~~~s--~~~~~~~~~~~~~~~~------~~~~piilV~NK~Dl~~~~~----~~~i 287 (329)
T 3o47_A 225 LWRH-----YFQNTQGLIFVVDSNDRER--VNEAREELMRMLAEDE------LRDAVLLVFANKQDLPNAMN----AAEI 287 (329)
T ss_dssp SHHH-----HHTTEEEEEEEEETTCSSS--HHHHHHHHHHHHTCGG------GTTCEEEEEEECTTSTTCCC----HHHH
T ss_pred HHHH-----HhccCCEEEEEEECCchHH--HHHHHHHHHHHHhhhc------cCCCeEEEEEECccCCcccC----HHHH
Confidence 2222 3457899999999988542 2233333333332211 13568999999999986543 2222
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
...+....-......++.+||++|.|+++|++.|.+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 288 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp HHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 222111110001124889999999999999999887543
No 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.83 E-value=7.7e-09 Score=97.85 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.++. ++ ..+ ..++..+... .....|+++|+||+||.... .....+..|. +..
T Consensus 77 ~~~~~d~~i~v~d~~~~~-s~-~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~ 143 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEK-SF-DNI-RNWIRNIEEH------ASADVEKMILGNKCDVNDKRQVSKERGEKLA----LDY 143 (183)
T ss_dssp TTTTCSEEEEEEETTCHH-HH-HHH-HHHHHHHHHH------SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH----HHH
T ss_pred HHhcCCEEEEEEECcCHH-HH-HHH-HHHHHHHHHh------cCCCCCEEEEEECccCCccCcCCHHHHHHHH----HHc
Confidence 567899999999998732 11 111 1122223221 11346899999999998643 3334444443 344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 144 ~~----~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 144 GI----KFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp TC----EEEECCC---CCHHHHHHHHHHH
T ss_pred CC----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988754
No 74
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.82 E-value=2.3e-08 Score=95.45 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=56.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... ...+...+...+... .....|+++|+||+|+..... ...+...+.. ....
T Consensus 80 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~--~~~~ 148 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKR--FEETGQELTELLEEE------KLSCVPVLIFANKQDLLTAAP-ASEIAEGLNL--HTIR 148 (181)
T ss_dssp HHTTCSEEEEEEETTCGGG--HHHHHHHHHHHTTCG------GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTG--GGCC
T ss_pred HhCCCCEEEEEEECcCHHH--HHHHHHHHHHHHhCh------hhcCCCEEEEEECcCcccCCC-HHHHHHHhCc--hhcc
Confidence 3457999999999987431 112222222222110 113468999999999986543 1112211100 0000
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.....++.+||++|.|++++++.|.+.+.
T Consensus 149 -~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 149 -DRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp -SSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred -CCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 01124889999999999999999987543
No 75
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.82 E-value=4.6e-09 Score=100.57 Aligned_cols=90 Identities=20% Similarity=0.157 Sum_probs=57.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+.. . ...+..++..... ......|+++|+||+||.... ........| .+..+
T Consensus 95 ~~~~d~vi~v~D~~~~~-----s-~~~~~~~l~~i~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 161 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQ-----T-YAVVERWLKELYD---HAEATIVVMLVGNKSDLSQAREVPTEEARMF----AENNG 161 (193)
T ss_dssp HTTCCEEEEEEETTCHH-----H-HHTHHHHHHHHHT---TSCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHH-----H-HHHHHHHHHHHHH---hcCCCCeEEEEEECCCcccccccCHHHHHHH----HHHcC
Confidence 45689999999998732 1 1112222222110 011346899999999998643 332333333 34555
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 162 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 L----LFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 48999999999999999988654
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=8.3e-09 Score=95.71 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=58.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+.... .. ...++..+..... .....|+++|+||+|+.+... .......+ .+..+
T Consensus 72 ~~~~~~~i~v~d~~~~~~~--~~-~~~~~~~i~~~~~----~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~ 140 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSL--EE-LKPIYEQICEIKG----DVESIPIMLVGNKCDESPSREVQSSEAEAL----ARTWK 140 (172)
T ss_dssp HHHCSEEEEEEETTCHHHH--HT-THHHHHHHHHHHC-------CCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHT
T ss_pred cccCCEEEEEEECcCHHHH--HH-HHHHHHHHHHHhC----CCCCCCEEEEEEccccccccccCHHHHHHH----HHHhC
Confidence 4568999999999873210 11 1122233332110 002468999999999986432 22223333 23334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
. .++.+||++|.|+++|++.|.+....
T Consensus 141 ~----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 C----AFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred C----eEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 3 38999999999999999999886543
No 77
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.82 E-value=8.6e-09 Score=95.03 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+... ......+..|. +..+
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 140 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEMES--FAAT-ADFREQILRVK-----EDENVPFLLVGNKSDLEDKRQVSVEEAKNRA----DQWN 140 (168)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----CCTTSCEEEEEECGGGGGGCCSCHHHHHHHH----HHHT
T ss_pred hhcCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCcEEEEEECccccccCccCHHHHHHHH----HHcC
Confidence 456899999999987421 1111 11222222211 1124689999999999754 33333344443 3334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 141 V----NYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred C----eEEEeCCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988764
No 78
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.82 E-value=1.6e-08 Score=111.30 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=86.8
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHH--HHHhhhc------------CCceeecccccceecceeccccc
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKA--REAQKEK------------GEVTVCARCHSLRNYGQVKNEVA 265 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a--~~a~~~~------------~~~~vCqRC~rLr~ygkv~~~~~ 265 (666)
+-.-.+++|+||+|||+| ++|.++...+.++...+ +++.... .....-+..+....+..+.....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 345668899999997755 99987754444433111 0010000 00000001111111111221122
Q ss_pred ccc---cCchh-HHHHHHHHhcCcccccccCEEEEEEecCCCCCC-----CcHHHHHHHHHHHHHhhhhhhhhcCCCcEE
Q 005972 266 ENL---IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGM-----FPKRAAKSLFKKLEEAKDDAKLSKKLPKLV 336 (666)
Q Consensus 266 ~~~---iP~~d-~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs-----~p~~i~~~I~~~L~~~~~~~~~~~~~kpvI 336 (666)
++. .|++. |.+.|.. .+..+|++++|||+.+.... .++. .+ .+..+... +.+++|
T Consensus 96 ~~~iiDTPGh~~f~~~~~~------~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e-~l~~~~~~--------~v~~iI 159 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIG------GASQADLAVLVISARKGEFETGFEKGGQT-RE-HAMLAKTA--------GVKHLI 159 (439)
T ss_pred EEEEEECCChHHHHHHHHh------hHhhCCEEEEEEECCCCccccccCCCchH-HH-HHHHHHHc--------CCCeEE
Confidence 222 27653 4444333 45679999999999884210 0221 11 22222221 334499
Q ss_pred EEEECCCCCCCCCChHH---HHHHHHHHHHhCCCCC--cceEEEEecccCcChhhHHH
Q 005972 337 LVGTKVDLLPSQVSPTR---LDRWVRHRAKAGGAPK--LNGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 337 LVlNKiDLLpk~~~~~~---L~~wl~~~~k~~g~~~--~~~V~~VSAkkg~GveeLl~ 389 (666)
+|+||+|+...+....+ +..-+..+.+.+|+.. ...++++||++|.|+++|.+
T Consensus 160 vviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999999753322222 2222333444555421 12489999999999998544
No 79
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.82 E-value=6.9e-09 Score=99.63 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC---CCChHHHHHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS---QVSPTRLDRWVRHRAK 363 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk---~~~~~~L~~wl~~~~k 363 (666)
...++|++++|+|+.+... ...+...+...+... ....|+++|+||+||... ......+..+ .+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~-------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~ 157 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTS--FDNISTKWEPEIKHY-------IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDL----CQ 157 (194)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH-------CTTSEEEEEEECGGGCCTTTTCCCHHHHHHH----HH
T ss_pred hccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHh-------CCCCCEEEEEEChhhccCCCCcccHHHHHHH----HH
Confidence 4568999999999987421 111112233333321 134689999999999853 2333334444 34
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
..+. ..++.+||++|.|+++|++.|.+.+
T Consensus 158 ~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 158 KLGC---VAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp HHTC---SCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcCC---CEEEEeecCCCCCHHHHHHHHHHHH
Confidence 4453 3489999999999999999887643
No 80
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.81 E-value=1.3e-08 Score=96.38 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+... ......+..|. ...
T Consensus 90 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 157 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQS--FLNV-RNWISQLQMHA-----YSENPDIVLCGNKSDLEDQRAVKEEEARELA----EKY 157 (195)
T ss_dssp TTTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHS-----SSSSCCEEEEEECTTCGGGCCSCHHHHHHHH----HHH
T ss_pred HHcCCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCCEEEEEECcccccccccCHHHHHHHH----HHc
Confidence 4567999999999987321 1111 12222222210 0024689999999999763 33333344443 344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+ ++.+||++|.|+++|++.|.+.
T Consensus 158 ~~~----~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 158 GIP----YFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHH
T ss_pred CCC----EEEEECCCCCCHHHHHHHHHHH
Confidence 543 8999999999999999988764
No 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.81 E-value=6.4e-09 Score=97.30 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=58.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+.... ........+. +..+
T Consensus 84 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 150 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTNS--FHQTS-KWIDDVRTE------RGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----KELN 150 (179)
T ss_dssp HHTCSEEEEEEETTCHHH--HHTHH-HHHHHHHHH------HTTSSEEEEEEECGGGGGGCCSCHHHHHHHH----HHHT
T ss_pred hcCCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------cCCCCcEEEEEECCcccccCcCCHHHHHHHH----HHcC
Confidence 456899999999987321 11111 122222221 11356899999999997543 2223333332 3334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.++
T Consensus 151 ~----~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 151 V----MFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp C----EEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3 3899999999999999999987654
No 82
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.81 E-value=1.2e-08 Score=98.87 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=59.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+||.... ........| ....
T Consensus 77 ~~~~~d~vilv~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 143 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQES--FNGV-KMWLQEIDRY------ATSTVLKLLVGNKCDLKDKRVVEYDVAKEF----ADAN 143 (206)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHH------SCTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHT
T ss_pred hccCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHHHH----HHHc
Confidence 4568999999999987321 1111 1222333321 11346899999999998643 332333333 3455
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+.+ ++.+||++|.|+++|++.|.+.+
T Consensus 144 ~~~----~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 144 KMP----FLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCe----EEEEeCCCCCCHHHHHHHHHHHH
Confidence 643 89999999999999999887653
No 83
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.81 E-value=5.4e-09 Score=99.96 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=58.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... + ..+ ..++..+... .....|+++|+||+|+.... .....+..| .+..
T Consensus 91 ~~~~~d~ii~v~d~~~~~s-~-~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 157 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQES-F-AAV-QDWATQIKTY------SWDNAQVILVGNKCDLEDERVVPAEDGRRL----ADDL 157 (189)
T ss_dssp GGTTCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred hccCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHh------cCCCCCEEEEEECcccccccCCCHHHHHHH----HHHc
Confidence 4567999999999987321 1 111 1222333321 11356899999999997643 223333444 3444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 158 ~~----~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 158 GF----EFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp TC----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999998764
No 84
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.81 E-value=6.6e-09 Score=97.39 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=56.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+...+...++.. .....|+++|+||+|+.... ........| ....+
T Consensus 78 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~ 145 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQS--FNEVGKLFTQILRVK------DRDDFPVVLVGNKADLESQRQVPRSEASAF----GASHH 145 (181)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHHHHHHHHHHHH------TSSCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred HhhCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhc------CCCCCCEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 346899999999987321 111222221111211 11356899999999998643 322333333 34445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 146 ~----~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 146 V----AYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----eEEEecCCCCCCHHHHHHHHHHH
Confidence 3 48999999999999999988754
No 85
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.81 E-value=3.4e-09 Score=111.07 Aligned_cols=119 Identities=24% Similarity=0.217 Sum_probs=77.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChh-hHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRD-EQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~-~~~ 476 (666)
+.|+++|.||||||||+|+|++..... ++..|+||++.+...... +.++.++||||+..+... +... ...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~i-----vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~---l~~~~~~~ 79 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAP-----ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA---LGEFMDQE 79 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC-----CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSH---HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee-----ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhH---HHHHHHHH
Confidence 579999999999999999999876443 358899999865432212 236789999999876431 1111 111
Q ss_pred HHHhhhhcCceeEEecCCCcccccceEEEeecccc--cceEEEEEecCCccccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQAS--VETIYVTVWASPNVSLH 528 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~--~~~v~~~v~~s~~l~~h 528 (666)
.....+..+...|.++....+..+....++.++.. ..++ +.+.|+++..
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~---ilV~NK~Dl~ 130 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI---LLVGNKLDAA 130 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE---EEEEECGGGC
T ss_pred HHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE---EEEEECcccC
Confidence 22345678889999998766555544444545443 3444 3456777753
No 86
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.80 E-value=3e-09 Score=109.97 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=55.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.++|+|++|+|+.+.. .. ..+...+.. ...|+++|+||+|+............| .+.+|.+
T Consensus 79 ~~~d~vi~V~D~t~~e-----~~-~~~~~~l~~---------~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~ 139 (272)
T 3b1v_A 79 QRADSILNVVDATNLE-----RN-LYLTTQLIE---------TGIPVTIALNMIDVLDGQGKKINVDKL----SYHLGVP 139 (272)
T ss_dssp TCCSEEEEEEEGGGHH-----HH-HHHHHHHHH---------TCSCEEEEEECHHHHHHTTCCCCHHHH----HHHHTSC
T ss_pred CCCCEEEEEecCCchH-----hH-HHHHHHHHh---------cCCCEEEEEEChhhCCcCCcHHHHHHH----HHHcCCC
Confidence 4699999999997621 11 122233332 246899999999997432111113333 2344643
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
++++||++|.|+++|++.|.+.+
T Consensus 140 ----vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 140 ----VVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ----EEECBTTTTBSHHHHHHHHHHSC
T ss_pred ----EEEEEccCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 87
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.80 E-value=4.5e-10 Score=120.14 Aligned_cols=146 Identities=18% Similarity=0.109 Sum_probs=87.2
Q ss_pred CcEEEEEECCCCCCCCCChHHHHHHHHHHHH-hCCCCCcceEEEEecccCcChhhHHHHHHhh-----------------
Q 005972 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK-AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL----------------- 394 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k-~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~----------------- 394 (666)
++.++++||+|+.+... ...|..++.. ..+.. ...+++..+.+...+.+.+.+.
T Consensus 89 k~~~~~Lnk~dl~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 160 (357)
T 2e87_A 89 DTFHKAMAGIDWAIRII----RELEERYVERIRYSND----PNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDL 160 (357)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTCCC----HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999987643 4566655543 32421 3334566666666655443221
Q ss_pred ---cCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccC
Q 005972 395 ---AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRL 470 (666)
Q Consensus 395 ---l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L 470 (666)
......++++|.+|||||||+|+|++.. .. +...|++|++......... ..+.++||||+...... .+
T Consensus 161 ~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~ 232 (357)
T 2e87_A 161 PVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS--ER 232 (357)
T ss_dssp CCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCST--TS
T ss_pred CccCCCCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchh--hh
Confidence 0234579999999999999999999765 22 2467888887654322222 25789999999764321 12
Q ss_pred ChhhHHHHH-hhhhcCceeEEecCC
Q 005972 471 NRDEQKMVE-IRKELQPRTYRVKAR 494 (666)
Q Consensus 471 ~~~~~~~~~-~~kel~~~~f~l~~~ 494 (666)
+.-+..... .....+...+.++..
T Consensus 233 ~~~~~~~~~~~~~~ad~illV~D~s 257 (357)
T 2e87_A 233 NEIEKQAILALRYLGNLIIYIFDPS 257 (357)
T ss_dssp CHHHHHHHHGGGGTCSEEEEEECTT
T ss_pred hHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 221222222 223355667777744
No 88
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.80 E-value=9e-09 Score=99.51 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-------CCCChHHHHHHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-------SQVSPTRLDRWVRH 360 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-------k~~~~~~L~~wl~~ 360 (666)
...+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+||.. ..........|
T Consensus 98 ~~~~d~iilv~d~~~~~s--~~~~-~~~~~~i~~~~------~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~--- 165 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKS--FLNI-REWVDMIEDAA------HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL--- 165 (199)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHC---------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH---
T ss_pred HhhCCEEEEEEECCChHH--HHHH-HHHHHHHHHhc------CCCCCEEEEEECcccccccccccccccCHHHHHHH---
Confidence 456899999999987321 1111 12223333211 12468999999999962 22222233333
Q ss_pred HHHhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.+..+. .++.+||++|.|+++|+..|.+.+
T Consensus 166 -~~~~~~----~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 166 -AMTYGA----LFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp -HHHHTC----EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHHcCC----eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 334453 388999999999999999987654
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.80 E-value=1.9e-08 Score=95.62 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. + ...+...+...+... .....|+++|+||+||..... ...+..++.. ....
T Consensus 85 ~~~~~d~ii~v~D~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~--~~~~ 153 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRE-R-ISVTREELYKMLAHE------DLRKAGLLIFANKQDVKECMT-VAEISQFLKL--TSIK 153 (181)
T ss_dssp GGTTCCEEEEEEETTCTT-T-HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTG--GGCC
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHHhCh------hhCCCeEEEEEECCCcccCCC-HHHHHHHhCc--cccc
Confidence 456899999999999853 1 222222332222210 013568999999999976432 2223332110 0011
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
. .--.++.+||++|.|+++|++.|.+
T Consensus 154 ~-~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 D-HQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp S-SCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred C-CceEEEEccCCCCcCHHHHHHHHHh
Confidence 0 0115899999999999999999875
No 90
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.79 E-value=5.3e-08 Score=91.18 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=59.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..+..... .......|+++|+||+|+.........+..|.+. ..+
T Consensus 76 ~~~~~~~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~~--~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~~~ 147 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQS--FQNL-SNWKKEFIYYAD--VKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---NGD 147 (177)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHHT--CSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---TTC
T ss_pred HHhcCCEEEEEEECcCHHH--HHHH-HHHHHHHHHHcc--ccccCCCcEEEEEECCcccccccCHHHHHHHHHh---cCC
Confidence 4567999999999987421 1111 122222222110 0000245899999999998555544445554321 223
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 148 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 148 Y----PYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp C----CEEECCTTTCTTHHHHHHHHHHH
T ss_pred c----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 2 38999999999999999988764
No 91
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.79 E-value=4.9e-09 Score=102.56 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=56.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+... ......... +.+..+
T Consensus 82 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 148 (218)
T 4djt_A 82 YIGASGAILFFDVTSRIT--CQNLA-RWVKEFQAV------VGNEAPIVVCANKIDIKNRQKISKKLVME----VLKGKN 148 (218)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTHH-HHHHHHHHH------HCSSSCEEEEEECTTCC----CCHHHHHH----HTTTCC
T ss_pred hhcCCEEEEEEeCCCHHH--HHHHH-HHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHHH----HHHHcC
Confidence 456999999999987321 11111 222223221 1134689999999999865 332222222 223344
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 149 ~----~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 149 Y----EYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp C----EEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred C----cEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3 4999999999999999999877543
No 92
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=98.52 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.... .....+..| .+.+
T Consensus 95 ~~~~~d~iilV~D~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~ 161 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKET--FDDL-PKWMKMIDKY------ASEDAELLLVGNKLDCETDREITRQQGEKF----AQQI 161 (192)
T ss_dssp HHHHCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHTS
T ss_pred HhcCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHHHH----HHhc
Confidence 3456899999999987421 1111 1222333322 11356899999999997543 332333333 3333
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ...++.+||++|.|+++|++.|.+.
T Consensus 162 ~---~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 162 T---GMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp T---TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred C---CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 1248899999999999999988754
No 93
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.79 E-value=2e-08 Score=95.02 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=58.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.+. .........| .+..
T Consensus 79 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 145 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRET--YNAL-TNWLTDARML------ASQNIVIILCGNKKDLDADREVTFLEASRF----AQEN 145 (186)
T ss_dssp TSTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HHhcCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 4567999999999987321 1111 1122222221 1135689999999999753 3332333333 3445
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 146 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 146 EL----MFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp TC----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred CC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 54 38899999999999999888654
No 94
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.78 E-value=6.4e-09 Score=99.74 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=57.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+... .........|. +..+
T Consensus 91 ~~~~d~ii~v~d~~~~~s--~~~~-~~~l~~i~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 157 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRET--FNHL-TSWLEDARQH------SSSNMVIMLIGNKSDLESRRDVKREEGEAFA----REHG 157 (191)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------cCCCCCEEEEEECcccCCccccCHHHHHHHH----HHcC
Confidence 457999999999987321 1111 1222223221 1135689999999999753 23333344443 3445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 158 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 158 L----IFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999888654
No 95
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.78 E-value=5.5e-09 Score=106.96 Aligned_cols=84 Identities=25% Similarity=0.257 Sum_probs=56.3
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|+|++|+|+.++. ... .+...+.. ...|+++|+||+|+............ +.+.+|.+
T Consensus 82 ~~~d~ii~V~D~t~~~-----~~~-~~~~~l~~---------~~~pvilv~NK~Dl~~~~~i~~~~~~----l~~~lg~~ 142 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-----QSL-YLLLEILE---------MEKKVILAMTAIDEAKKTGMKIDRYE----LQKHLGIP 142 (258)
T ss_dssp SCCSEEEEEEETTSCH-----HHH-HHHHHHHT---------TTCCEEEEEECHHHHHHTTCCBCHHH----HHHHHCSC
T ss_pred cCCCEEEEEeCCCchh-----hHH-HHHHHHHh---------cCCCEEEEEECcCCCCccchHHHHHH----HHHHcCCC
Confidence 4789999999998742 211 22233332 24689999999999743221111233 33455654
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
++++||++|.|+++|++.|.+.+
T Consensus 143 ----vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 143 ----VVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----EEEEEeeCCcCHHHHHHHHHHHh
Confidence 99999999999999999987653
No 96
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.78 E-value=1.6e-08 Score=95.28 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=57.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... ...+. .++..+.... .....|+++|+||+|+.... .....+..| .+..+
T Consensus 87 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 154 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMES--FAATA-DFREQILRVK-----EDENVPFLLVGNKSDLEDKRQVSVEEAKNR----AEQWN 154 (187)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHH-HHHHHHHHHH-----CCTTCCEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECcCHHH--HHHHH-HHHHHHHHhc-----CCCCCCEEEEEECccccccCccCHHHHHHH----HHHcC
Confidence 456899999999987421 11111 1222222211 11256899999999997643 333333333 34555
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 155 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 155 V----NYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred C----eEEEeCCCCCCCHHHHHHHHHHH
Confidence 4 38999999999999999988764
No 97
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.78 E-value=2.1e-09 Score=122.83 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=53.9
Q ss_pred cccccCEEEEEEecCCCC---CC--CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFD---GM--FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRH 360 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~---gs--~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~ 360 (666)
.+..+|++|+|||+.+.. |. .++. ...+..+... +.+++|+|+||+|+..... ....+...+..
T Consensus 275 ~~~~aD~alLVVDa~~g~~e~gi~~~~qt--~e~l~~~~~l--------gip~iIvviNKiDl~~~~~~~~~~i~~el~~ 344 (592)
T 3mca_A 275 GASSADFAVLVVDSSQNNFERGFLENGQT--REHAYLLRAL--------GISEIVVSVNKLDLMSWSEDRFQEIKNIVSD 344 (592)
T ss_dssp -------CCSEEEEEECCSSTTSCSCSSH--HHHHHHHHHS--------SCCCEEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccccccccchHH--HHHHHHHHHc--------CCCeEEEEEeccccccccHHHHHHHHHHHHH
Confidence 456799999999998732 11 2322 1222222221 3345999999999986321 11112223333
Q ss_pred HH-HhCCCCC-cceEEEEecccCcChh--------------hHHHHHHhhcC
Q 005972 361 RA-KAGGAPK-LNGVYLVSARKDLGVR--------------NLLAFIKELAG 396 (666)
Q Consensus 361 ~~-k~~g~~~-~~~V~~VSAkkg~Gve--------------eLl~~I~~~l~ 396 (666)
+. +..|+.. -..++++||++|.|+. .|++.|....+
T Consensus 345 ~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 345 FLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp HHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred HHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 33 3445421 1258999999999998 68888877654
No 98
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.78 E-value=3.1e-09 Score=102.52 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. ++ ..+...+...++.. .....|+++|+||+|+.. ......+..++ ....
T Consensus 87 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~-~~~~~~~~~~~----~~~~ 153 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPE-RF-DEARVELDALFNIA------ELKDVPFVILGNKIDAPN-AVSEAELRSAL----GLLN 153 (190)
T ss_dssp GCTTCCEEEEEEETTCGG-GH-HHHHHHHHHHHTCG------GGTTCCEEEEEECTTSTT-CCCHHHHHHHT----TCSS
T ss_pred HHhcCCEEEEEEECCChH-HH-HHHHHHHHHHHcch------hhcCCCEEEEEECCCCcC-CCCHHHHHHHh----CCcc
Confidence 456899999999998843 11 12222222221110 013468999999999976 33333333332 1110
Q ss_pred --------CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 --------APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 --------~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
......++.+||++|.|++++++.|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 154 TTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 0012358899999999999999998753
No 99
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.78 E-value=1.9e-08 Score=96.82 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=60.8
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecc---eecccccccccCchhHHHH
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYG---QVKNEVAENLIPDFDFDRV 277 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~yg---kv~~~~~~~~iP~~d~~~~ 277 (666)
.+-.+++|.+|+|||+| |++.+.+.........+ ....+... .....+ .+.- .-+.+|+......
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t-------~~~~~~~~--~~~~~~~~~~~~~--~l~Dt~G~~~~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMT-------SGVEVVVA--PVTIPDTTVSVEL--FLLDTAGSDLYKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------------CE--EEECTTSSEEEEE--EEEETTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCc-------cceEEEEE--EEEECCcccEEEE--EEEECCCcHHHHH
Confidence 35668899999997655 98888732222222111 00000000 001011 0000 0012366543222
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhc---CCCcEEEEEECCCCCC-C-CCChH
Q 005972 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSK---KLPKLVLVGTKVDLLP-S-QVSPT 352 (666)
Q Consensus 278 L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~---~~kpvILVlNKiDLLp-k-~~~~~ 352 (666)
+ ... ....+|++++|+|+.+.. + ...+ ..++..+... .. ...|+++|+||+|+.. . .....
T Consensus 89 ~---~~~--~~~~~d~~i~v~d~~~~~-s-~~~~-~~~~~~i~~~------~~~~~~~~piilv~nK~Dl~~~~~~v~~~ 154 (208)
T 2yc2_C 89 Q---ISQ--YWNGVYYAILVFDVSSME-S-FESC-KAWFELLKSA------RPDRERPLRAVLVANKTDLPPQRHQVRLD 154 (208)
T ss_dssp H---HST--TCCCCCEEEEEEETTCHH-H-HHHH-HHHHHHHHHH------CSCTTSCCEEEEEEECC-------CCCHH
T ss_pred H---HHH--HHhhCcEEEEEEECCCHH-H-HHHH-HHHHHHHHHh------hcccccCCcEEEEEECcccchhhccCCHH
Confidence 2 222 567899999999998732 1 0111 1222223221 11 2468999999999986 3 33333
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEEeccc-CcChhhHHHHHHhh
Q 005972 353 RLDRWVRHRAKAGGAPKLNGVYLVSARK-DLGVRNLLAFIKEL 394 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkk-g~GveeLl~~I~~~ 394 (666)
.+..| .+.++. .++.+||++ |.|+++|++.|.+.
T Consensus 155 ~~~~~----~~~~~~----~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 155 MAQDW----ATTNTL----DFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHHH----HHHTTC----EEEECCC-------CHHHHHHHHH
T ss_pred HHHHH----HHHcCC----EEEEeccCCCCcCHHHHHHHHHHH
Confidence 44444 345554 489999999 99999999988764
No 100
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77 E-value=1.3e-08 Score=99.49 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=58.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ...+..+... .....|+++|+||+|+... .........|. +..
T Consensus 95 ~~~~~d~~i~v~D~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~ 161 (201)
T 2ew1_A 95 YYRSANALILTYDITCEES--FRCL-PEWLREIEQY------ASNKVITVLVGNKIDLAERREVSQQRAEEFS----EAQ 161 (201)
T ss_dssp GSTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH----HHH
T ss_pred HHhcCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHHHHH----HHc
Confidence 4568999999999987321 0111 1222223221 1134689999999999753 33333344443 333
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+ ++.+||++|.|+++|++.|.+.
T Consensus 162 ~~~----~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 162 DMY----YLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHH
T ss_pred CCE----EEEEeCCCCCCHHHHHHHHHHH
Confidence 433 8999999999999999988654
No 101
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.77 E-value=1.2e-08 Score=96.27 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=59.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-------------CChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+.. .....
T Consensus 73 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPAS--FENVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------S-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hccCCcEEEEEEECCChhh--HHHHHHHHHHHHHHh------C-CCCCEEEEeEcccccccchhhhhhcccccccCCHHH
Confidence 4568999999999987321 111111233333331 1 246899999999997642 11112
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.. .+.+..+ ...++.+||++|.|+++|++.|.+.+.
T Consensus 144 ~~----~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 144 GL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HH----HHHHhcC---CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 22 2334455 235899999999999999999887653
No 102
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.77 E-value=1.9e-08 Score=96.16 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=55.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+.. ++..+.... .....|+++|+||+|+.... ........ +.+..+
T Consensus 91 ~~~~d~iilv~D~~~~~s--~~~~~~-~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~v~~~~~~~----~~~~~~ 158 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMAS--FHSLPA-WIEECKQHL-----LANDIPRILVGNKCDLRSAIQVPTDLAQK----FADTHS 158 (189)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTHHH-HHHHHHHHC-----CCSCCCEEEEEECTTCGGGCCSCHHHHHH----HHHHTT
T ss_pred hcCCCEEEEEEECcCHHH--HHHHHH-HHHHHHHhc-----CCCCCCEEEEEECccccccceeCHHHHHH----HHHHcC
Confidence 457899999999987321 011111 122222211 11346899999999997543 23233333 334556
Q ss_pred CCCcceEEEEecccC---cChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKD---LGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg---~GveeLl~~I~~~l 395 (666)
.+ ++.+||+++ .|++++++.|.+.+
T Consensus 159 ~~----~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MP----LFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CC----EEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CE----EEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 43 899999999 89999998886543
No 103
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.76 E-value=1.7e-08 Score=97.94 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+.... ........| .+..
T Consensus 94 ~~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 160 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRET--YNSLA-AWLTDARTL------ASPNIVVILCGNKKDLDPEREVTFLEASRF----AQEN 160 (200)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTHH-HHHHHHHHH------TCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEECcCHHH--HHHHH-HHHHHHHHh------cCCCCcEEEEEECCCcccccccCHHHHHHH----HHHc
Confidence 3467999999999987321 11111 122222221 11356899999999997533 322333333 3445
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 161 ~~----~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 161 EL----MFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp TC----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 38899999999999999988654
No 104
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.75 E-value=2.5e-08 Score=107.40 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=57.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++... .......+.+.|..... ...|+|+|+||+|+++... ......+..+.+.++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~-~~~~~~~~~~~L~~l~~------~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENL-LIETLQSSFEILREIGV------SGKPILVTLNKIDKINGDL--YKKLDLVEKLSKELY 324 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHH-HHHHHHHHHHHHHHHTC------CSCCEEEEEECGGGCCSCH--HHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEEEECCCCcch-HHHHHHHHHHHHHHhCc------CCCCEEEEEECCCCCCchH--HHHHHHHHHHHHHhc
Confidence 35679999999999874200 01111122233433211 3468999999999986541 111112212222321
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.. ...++++||+++.|+++|++.|.+.+
T Consensus 325 ~~-~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 325 SP-IFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp SC-EEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CC-CCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 10 12478999999999999999987754
No 105
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.75 E-value=5.1e-08 Score=95.19 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=58.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. . ...+..++..... .......|+++|+||+|+.... .....+..| .+..
T Consensus 104 ~~~~~d~iilV~D~~~~~-----s-~~~~~~~l~~i~~--~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~ 171 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQ-----S-FLNVRNWMSQLQA--NAYCENPDIVLIGNKADLPDQREVNERQAREL----ADKY 171 (217)
T ss_dssp HHTTCCEEEEEEETTCHH-----H-HHHHHHHHHTCCC--CCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred HhcCCCEEEEEEECcCHH-----H-HHHHHHHHHHHHH--hcCcCCCCEEEEEECCccccccccCHHHHHHH----HHHC
Confidence 346799999999998732 1 1223334433211 0000246899999999997532 333333433 3455
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+.+ ++.+||++|.|+++|++.|.+.
T Consensus 172 ~~~----~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 172 GIP----YFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp TCC----EEEEBTTTTBTHHHHHHHHHHH
T ss_pred CCc----EEEEECCCCCCHHHHHHHHHHH
Confidence 643 8999999999999999988764
No 106
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.75 E-value=2.4e-08 Score=96.30 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=58.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+.. ++..+..... .......|+++|+||+|+.........+..|.+ ...+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s--~~~~~~-~~~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~ 148 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNT--FKTLDS-WRDEFLIQAS--PRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNN 148 (207)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHTHHH-HHHHHHHHHC--CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTS
T ss_pred HHhCCcEEEEEEECCCHHH--HHHHHH-HHHHHHHhcc--cccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCC
Confidence 4567999999999987421 111111 1222222110 000023589999999999865554444444432 1333
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 149 ~----~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 149 I----PYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp C----CEEECBTTTTBSHHHHHHHHHHH
T ss_pred c----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998765
No 107
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.74 E-value=3.8e-08 Score=94.67 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=57.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+ ..++..+.... .....|+++|+||+|+... ......+..|. +..+
T Consensus 83 ~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 150 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMES-F-AAT-ADFREQILRVK-----EDENVPFLLVGNKSDLEDKRQVSVEEAKNRA----EQWN 150 (206)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HHH-HHHHHHHHHHT-----TCSCCCEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCCEEEEEeccCccccccccHHHHHHHH----HHhC
Confidence 456899999999987421 1 111 12222222211 1125689999999999864 33333444443 3344
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 151 ~----~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 151 V----NYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 108
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.74 E-value=6.6e-09 Score=97.87 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-----------ChHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-----------SPTRLD 355 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-----------~~~~L~ 355 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+... ......
T Consensus 76 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKAS--YENVSKKWIPELKHY------A-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 4567999999999987321 111111233333331 1 2468999999999975421 222233
Q ss_pred HHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.| .+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 147 ~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 147 EL----KKLIG---APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HH----HHHcC---CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33 23344 2348899999999999999998764
No 109
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.74 E-value=8.8e-09 Score=114.32 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccc---ccCchh-H-
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD-F- 274 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP~~d-~- 274 (666)
.|+..++||+||+||| ++|++.+....+++..+ ..++......+......+ ..|++. +
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~----------------gtT~d~~~~~i~~~g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP----------------GTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT----------------TCCHHHHHHEEEETTEEEEECC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----------------CeeEEEEEEEEEECCEEEEEEECCccccch
Confidence 4777889999999966 55999886533222111 111111000110001111 124431 1
Q ss_pred ---HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh
Q 005972 275 ---DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 275 ---~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
.....+.... ....+|+|++|+|+.+... .....++..+ ..+|+++|+||+|+.+.....
T Consensus 287 ~~ve~~gi~~~~~--~~~~aD~vl~VvD~s~~~~----~~~~~i~~~l-----------~~~piivV~NK~Dl~~~~~~~ 349 (462)
T 3geh_A 287 DQVEKIGVERSRQ--AANTADLVLLTIDAATGWT----TGDQEIYEQV-----------KHRPLILVMNKIDLVEKQLIT 349 (462)
T ss_dssp ------------C--CCCSCSEEEEEEETTTCSC----HHHHHHHHHH-----------TTSCEEEEEECTTSSCGGGST
T ss_pred hHHHHHHHHHHhh--hhhcCCEEEEEeccCCCCC----HHHHHHHHhc-----------cCCcEEEEEECCCCCcchhhH
Confidence 1111122233 5678999999999988431 1223333322 235899999999998653211
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.+. .+. ....++.+||++|.|+++|++.|.+.+.
T Consensus 350 -~~~--------~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 350 -SLE--------YPE--NITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp -TCC--------CCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred -HHH--------Hhc--cCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 011 111 1234899999999999999999987654
No 110
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.74 E-value=7.2e-08 Score=92.11 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... ...+...+...+.. ........|+++|+||+|+..... ...+..++.. ..+.
T Consensus 87 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~----~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~--~~~~ 157 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLR--MVVAKEELDTLLNH----PDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCL--ENIK 157 (190)
T ss_dssp GGGGCSEEEEEEETTCHHH--HHHHHHHHHHHHHS----TTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTG--GGCC
T ss_pred HHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhC----hhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhCh--hhcc
Confidence 4578999999999987321 11122222222211 000002468999999999976432 2333333210 1111
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. .--.++.+||++|.|+++|++.|.+.+
T Consensus 158 ~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 158 D-KPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp S-SCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred C-CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 012588999999999999999998754
No 111
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.73 E-value=9.9e-09 Score=100.05 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-------------ChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-------------SPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-------------~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+... . ...|+++|+||+||..... ....
T Consensus 98 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPAS--FENVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 4568999999999987321 111111233333331 1 3568999999999986431 1111
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.. .+.+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 169 ~~----~~~~~~~---~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 169 GL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HH----HHHHhcC---CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 22 2334555 3458999999999999999998764
No 112
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.73 E-value=1.2e-08 Score=94.54 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=57.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+.. ++..+... . ...|+++|+||+|+.... .....+..|. +..+
T Consensus 75 ~~~~d~~i~v~d~~~~~s--~~~~~~-~~~~i~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 140 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRES--FEAISS-WREKVVAE------V-GDIPTALVQNKIDLLDDSCIKNEEAEGLA----KRLK 140 (168)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTHHH-HHHHHHHH------H-CSCCEEEEEECGGGGGGCSSCHHHHHHHH----HHHT
T ss_pred hcCCCEEEEEEECcCHHH--HHHHHH-HHHHHHHh------C-CCCCEEEEEECcccCcccccCHHHHHHHH----HHcC
Confidence 457899999999987321 111111 22222221 1 346899999999998543 3333344443 3445
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 141 L----RFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp C----EEEECBTTTTBSSHHHHHHHHHH
T ss_pred C----eEEEEecCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998764
No 113
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=6.1e-09 Score=113.44 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=36.5
Q ss_pred CcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHH-HHHhhcCCC
Q 005972 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA-FIKELAGPR 398 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~-~I~~~l~~~ 398 (666)
+|+++|+||+|+. . ...+..+.+.+ ...+ ..++++||+.+.|+.+|++ .|.+++|.+
T Consensus 215 kP~i~v~NK~D~~-~---~~~l~~l~~~~-~~~~----~~vv~iSA~~e~~l~~L~~~~l~~~~p~~ 272 (397)
T 1wxq_A 215 KPMVIAANKADAA-S---DEQIKRLVREE-EKRG----YIVIPTSAAAELTLRKAAKAGFIEYIPGA 272 (397)
T ss_dssp SCEEEEEECGGGS-C---HHHHHHHHHHH-HHTT----CEEEEECHHHHHHHHSCSSSCCCCSCC--
T ss_pred CCEEEEEeCcccc-c---hHHHHHHHHHH-hhcC----CcEEEEeccchhhHHHHHhhhhhhhcCCC
Confidence 6899999999987 2 12233333222 2223 2499999999999988766 555555543
No 114
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.72 E-value=3.3e-08 Score=95.77 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-------------CChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
...++|++++|+|+.+... ...+...+...+... . ...|+++|+||+|+.+.. .....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDS--LENIPEKWTPEVKHF------C-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------S-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH
T ss_pred hcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH
Confidence 4568999999999987321 111212233333331 1 246899999999998642 11112
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.. .+.+..+. ..++.+||++|.|+++|++.|.+.
T Consensus 164 ~~----~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 164 GR----DMANRISA---FGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HH----HHHHHTTC---SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HH----HHHHhCCC---cEEEEeeCCCCCCHHHHHHHHHHH
Confidence 22 22344552 358999999999999999998764
No 115
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=99.88 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=56.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-------------CChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+.. .....
T Consensus 102 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNS--FDNIFNRWYPEVNHF------C-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp ---CEEEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred HhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence 4567999999999987321 111111222333321 1 346899999999998642 11122
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
... +.+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 173 ~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 173 GQE----MARSVG---AVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp HHH----HHHHTT---CSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHH----HHHhcC---CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 222 334555 2358999999999999999988764
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.72 E-value=1.6e-08 Score=96.49 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=58.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++. + .......+...+... .....|+++|+||+|+..... ...+... .....-
T Consensus 86 ~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~-~~~~~~~---~~~~~~ 153 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRD-R-MGVAKHELYALLDED------ELRKSLLLIFANKQDLPDAAS-EAEIAEQ---LGVSSI 153 (189)
T ss_dssp SSTTCCEEEEEEETTCCT-T-HHHHHHHHHHHHTCS------TTTTCEEEEEEECTTSTTCCC-HHHHHHH---TTGGGC
T ss_pred HhhcCCEEEEEEeCCCHH-H-HHHHHHHHHHHHhhh------hcCCCeEEEEEECCCCcCCCC-HHHHHHH---hChhhc
Confidence 456899999999999854 1 222222232222210 013468999999999976543 1222221 110000
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
...--.++.+||++|.|+++|++.|.+.+
T Consensus 154 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 154 MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00011588999999999999999987654
No 117
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.72 E-value=2.7e-08 Score=98.78 Aligned_cols=91 Identities=23% Similarity=0.201 Sum_probs=55.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|.|+.+.. ++ ..+ ..+...+.+.. .....|+|||+||+||... .........| ....+
T Consensus 109 ~~~a~~~ilVydvt~~~-sf-~~~-~~~~~~l~~~~-----~~~~~piilVgNK~DL~~~r~v~~~e~~~~----a~~~~ 176 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRA-SF-EKA-SELRIQLRRAR-----QTEDIPIILVGNKSDLVRCREVSVSEGRAC----AVVFD 176 (211)
T ss_dssp CCCCSEEEEEEETTCHH-HH-HHH-HHHHHHHHTSG-----GGTTSCEEEEEECTTCGGGCCSCHHHHHHH----HHHHT
T ss_pred HhhCCEEEEEEECCCHH-HH-HHH-HHHHHHHHHHh-----CCCCCcEEEEEEChHHhcCceEeHHHHHHH----HHHcC
Confidence 45688999999988732 11 111 12222232210 0134689999999999753 2322222233 23334
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 177 ~----~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 177 C----KFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999988653
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.72 E-value=2.4e-08 Score=94.29 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. + ...+. .++..... .......|+++|+||+|+..... ...+..++ ....
T Consensus 82 ~~~~~d~ii~v~d~~~~~-s-~~~~~----~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~----~~~~ 148 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKD-R-MSTAS----KELHLMLQ--EEELQDAALLVFANKQDQPGALS-ASEVSKEL----NLVE 148 (183)
T ss_dssp TTTTEEEEEEEEETTCTT-T-HHHHH----HHHHHHTT--SSTTSSCEEEEEEECTTSTTCCC-HHHHHHHT----TTTT
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHH----HHHHHHHc--ChhhCCCeEEEEEECCCCCCCCC-HHHHHHHh----Cccc
Confidence 456899999999998853 1 12222 22222111 00013468999999999976432 22233221 1111
Q ss_pred CC-CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 AP-KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~-~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.. ..-.++.+||++|.|+++|++.|.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 10 012589999999999999999987653
No 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=1.6e-08 Score=98.48 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-------------ChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-------------SPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-------------~~~~ 353 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+... ....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDS--LENIPEKWVPEVKHF------C-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp GCTTCCEEEEEEETTCHHH--HHHHHHTHHHHHHHH------S-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred hcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHH
Confidence 4568999999999987321 112222333434331 1 2468999999999976421 1111
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
... +....+ ...++.+||++|.|+++|++.|.+.
T Consensus 164 ~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 164 GRA----MAVRIQ---AYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHH----HHHhcC---CCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 122 233444 2358999999999999999998764
No 120
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.71 E-value=9.2e-09 Score=101.54 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|++||+||+||... .........| .+..
T Consensus 82 ~~~~~d~vilV~D~~~~~s--~~~~-~~~l~~i~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 148 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSS--YENC-NHWLSELREN------ADDNVAVGLIGNKSDLAHLRAVPTEESKTF----AQEN 148 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHH--HHHH-HHHHHHHHHH------CC--CEEEEEECCGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEeCCCHHH--HHHH-HHHHHHHHHh------CCCCCeEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 4567999999999987421 1111 1222333221 1134689999999999853 3333333433 3445
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+. .++.+||++|.|+++|++.|.+.+.
T Consensus 149 ~~----~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 149 QL----LFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp TC----EEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53 3889999999999999999876543
No 121
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.71 E-value=1.2e-08 Score=98.37 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=58.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+. ......
T Consensus 88 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSS--FQNVSEKWVPEIRCH------C-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 4567999999999987321 111111223333321 1 24689999999999753 222223
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...| .+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 159 ~~~~----~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 159 AKLL----AEEIK---AASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp HHHH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHH----HHhcC---CcEEEEEecCCCCCHHHHHHHHHHH
Confidence 3333 23334 2348999999999999999988654
No 122
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.70 E-value=2.5e-07 Score=90.02 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=55.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHH----
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK---- 363 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k---- 363 (666)
...+|++++|+|+.++. .....+..++..............|+++|+||+||..... ...+..+++....
T Consensus 76 ~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQ-----REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS-AKLIQQQLEKELNTLRV 149 (214)
T ss_dssp GGGEEEEEEEEETTTHH-----HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC-HHHHHHHHHHHHHHHHH
T ss_pred HhhCCEEEEEEECCCcC-----HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc-HHHHHHHHHHHHHHHhc
Confidence 45789999999998632 1111222222221110011113468999999999986544 2223333332221
Q ss_pred ---------------h--CCC-----C--C---cceEEEEecccC------cChhhHHHHHHhh
Q 005972 364 ---------------A--GGA-----P--K---LNGVYLVSARKD------LGVRNLLAFIKEL 394 (666)
Q Consensus 364 ---------------~--~g~-----~--~---~~~V~~VSAkkg------~GveeLl~~I~~~ 394 (666)
. .+. . . ...++.+||++| .|+++|.+.|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 010 0 0 124788999999 9999999998764
No 123
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=3.4e-08 Score=94.62 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=58.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+||.+. ......
T Consensus 86 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPAS--FQNVKEEWVPELKEY------A-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------S-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred hcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 4567999999999987321 111111233333331 1 24689999999999863 222233
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...|. +.++. ..++.+||++|.|+++|++.|.+.
T Consensus 157 ~~~~~----~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 157 GQKLA----KEIGA---CCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHH----HHHTC---SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHH----HHcCC---cEEEEeeCCCCCCHHHHHHHHHHH
Confidence 33332 33442 248999999999999999988754
No 124
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.69 E-value=8.3e-09 Score=99.91 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. . ...+..++..... .......|+++|+||+||.+... .......| .+..
T Consensus 92 ~~~~~d~~i~v~d~~~~~-----s-~~~~~~~~~~i~~--~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 159 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLH-----S-FQVIESLYQKLHE--GHGKTRVPVVLVGNKADLSPEREVQAVEGKKL----AESW 159 (201)
T ss_dssp GTTTCCEEEEEEETTCHH-----H-HHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred HHhcCCEEEEEEeCCCHH-----H-HHHHHHHHHHHHH--hcCCCCCCEEEEEECccCccccccCHHHHHHH----HHHh
Confidence 456799999999998732 1 1122222222111 00113468999999999985433 32333333 3344
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 160 ~~----~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 160 GA----TFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp TC----EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CC----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988764
No 125
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.69 E-value=4.1e-08 Score=95.24 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + ..+... +..+.... .....|+++|+||+||.... ........| .+..+
T Consensus 94 ~~~~d~~ilv~d~~~~~s-~-~~~~~~-~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----a~~~~ 161 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRS-F-SKVPET-LLRLRAGR-----PHHDLPVILVGNKSDLARSREVSLEEGRHL----AGTLS 161 (195)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HTHHHH-HHHHHHHS-----TTSCCCEEEEEECTTCTTTCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH-H-HHHHHH-HHHHHHhc-----CCCCCCEEEEeechhccccCCcCHHHHHHH----HHHhC
Confidence 346899999999987421 0 112222 22222210 00246899999999998543 333333333 34455
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. .++.+||++|.|+++|++.|.+.+
T Consensus 162 ~----~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 C----KHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp C----EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred C----EEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3 388999999999999999887643
No 126
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.68 E-value=2.8e-07 Score=86.55 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=56.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC---CCCChHHHHHHHHHHHHhC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~ 365 (666)
.++|++++|+|+.+... + .. ...++.++..... ......|+++|+||+|+.. .......+..|. +..
T Consensus 71 ~~~d~~ilv~D~~~~~s-~-~~-~~~~~~~i~~~~~---~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~~ 140 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENS-F-QA-VSRLHGQLSSLRG---EGRGGLALALVGTQDRISASSPRVVGDARARALX----ADM 140 (178)
T ss_dssp HHCSEEEEEEETTCHHH-H-HH-HHHHHHHHHHHHC---SSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH----HHH
T ss_pred HhCCEEEEEEECcCHHH-H-HH-HHHHHHHHHHHHh---cCCCCCCEEEEEECccccccccCcCCHHHHHHHH----Hhh
Confidence 45899999999987431 1 11 1222223332210 0113468999999999952 233334444443 222
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+ ...++.+||++|.|++++++.|.+.
T Consensus 141 ~---~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 141 K---RCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp S---SEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred c---CCeEEEEeccccCCHHHHHHHHHHH
Confidence 1 1248899999999999999988653
No 127
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.66 E-value=6.6e-08 Score=98.07 Aligned_cols=166 Identities=11% Similarity=0.082 Sum_probs=88.3
Q ss_pred CCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccc---ccCch----
Q 005972 201 DGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDF---- 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~---~iP~~---- 272 (666)
+.+-.++||+||+||| ++|++.+.+..+....... .+..|..... .....++ .+|++
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~--------~T~~~~~~~~-------~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATS--------VTRACTTGSR-------RWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------CCSCEEEEE-------EETTEEEEEEECCSCSSTT
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCC--------ccccEEEEEE-------EECCcEEEEEECCCCCCCC
Confidence 3466788999999966 5599999987655443221 1223332221 1111111 13553
Q ss_pred -----hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 273 -----DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 273 -----d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.+.+.+.+.+.. ....+|++|+|+|+..+. ..+..+++.+..... ... ...|+|||.||+||...
T Consensus 85 ~~~~~~~~~~i~~~~~~--~~~~~d~il~V~d~~~~~-----~~~~~~~~~l~~~~~-~~~--~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLL--SAPGPHALLLVTQLGRFT-----AQDQQAVRQVRDMFG-EDV--LKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHSTTSHHHHHHHHH--HTTCCSEEEEEEETTBCC-----HHHHHHHHHHHHHHC-GGG--GGGEEEEEECGGGGTTC
T ss_pred CCcHHHHHHHHHHHHHh--cCCCCCEEEEEEeCCCCC-----HHHHHHHHHHHHHhC-hhh--hccEEEEEEchHhcCCC
Confidence 222333332222 347899999999997532 233445555554311 000 13589999999999654
Q ss_pred CCChHHHH----HHHHHHHHhCCCCCcceEEEEeccc-----CcChhhHHHHHHhhcC
Q 005972 348 QVSPTRLD----RWVRHRAKAGGAPKLNGVYLVSARK-----DLGVRNLLAFIKELAG 396 (666)
Q Consensus 348 ~~~~~~L~----~wl~~~~k~~g~~~~~~V~~VSAkk-----g~GveeLl~~I~~~l~ 396 (666)
.. ...+. ..++.+.+..|.. ++++++.. +.|+++|++.|.++++
T Consensus 155 ~~-~~~l~~~~~~~l~~l~~~~g~~----~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 155 SL-HDYVSNTENRALRELVAECGGR----VCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp CH-HHHHHHCCCHHHHHHHHHTTTC----EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHhhcccHHHHHHHHHcCCe----EEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 31 11111 1123344555532 55555433 6899999999988765
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.66 E-value=1.8e-07 Score=101.68 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=65.9
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|.+.+.. ....+|++++|+|+.+.. +.++. .+ .+..+... +.+|+++|+||+|+++..
T Consensus 83 PGh~~~~~~~~~------~~~~~D~~ilVvda~~~~-~~~qt-~~-~~~~~~~~--------~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 83 PGHEVLMATMLS------GAALMDGAILVVAANEPF-PQPQT-RE-HFVALGII--------GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCCGGGHHHHHH------HHTTCSEEEEEEETTSCS-SCHHH-HH-HHHHHHHH--------TCCCEEEEEECGGGSCHH
T ss_pred CCcHHHHHHHHH------HHhhCCEEEEEEECCCCC-CcHHH-HH-HHHHHHHc--------CCCCEEEEEECccccchH
Confidence 665 34554444 346699999999999842 13322 22 22333322 335899999999998643
Q ss_pred CChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
....... .++.+.+..+.. ...++++||++|.|+++|++.|.+.++.
T Consensus 146 ~~~~~~~-~i~~~l~~~~~~-~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 146 EALSQYR-QIKQFTKGTWAE-NVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHH-HHHHHHTTSTTT-TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHH-HHHHHHHhhCCC-CCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2111111 222222222221 2249999999999999999999886553
No 129
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=5.8e-08 Score=93.42 Aligned_cols=91 Identities=26% Similarity=0.235 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.++.. + ..+ ..++..+.... .....|+++|+||+|+... .........+. +..+
T Consensus 96 ~~~~d~iilv~D~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~ 163 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGS-F-EEV-LPLKNILDEIK-----KPKNVTLILVGNKADLDHSRQVSTEEGEKLA----TELA 163 (196)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHHH-----TTSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHHT
T ss_pred hccCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHhh-----CCCCCcEEEEEECcccccccccCHHHHHHHH----HHhC
Confidence 456899999999987431 1 111 11222232211 1134689999999999863 33333344443 3334
Q ss_pred CCCcceEEEEecccCc-ChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDL-GVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~-GveeLl~~I~~~ 394 (666)
. .++.+||++|. |++++++.|.+.
T Consensus 164 ~----~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 164 C----AFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp S----EEEECCTTTCTTCHHHHHHHHHHH
T ss_pred C----eEEEECCCcCCcCHHHHHHHHHHH
Confidence 3 38999999999 999999988654
No 130
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.65 E-value=1.3e-07 Score=106.53 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.3
Q ss_pred eEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.|+++||++|.|+++|++.|.+++|..
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p 278 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPP 278 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCC
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCC
Confidence 478899999999999999999998765
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.65 E-value=1.3e-07 Score=101.03 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=58.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|.+++|+|+.++.+... .....++..+.... ...|+++|+||+|+..... +.... .+....+.+
T Consensus 245 ~~ad~illV~D~s~~~~~~~-~~~~~~~~~i~~~~-------~~~piilV~NK~Dl~~~~~----~~~~~-~~~~~~~~~ 311 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPL-EEQIHLFEEVHGEF-------KDLPFLVVINKIDVADEEN----IKRLE-KFVKEKGLN 311 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCH-HHHHHHHHHHHHHT-------TTSCEEEEECCTTTCCHHH----HHHHH-HHHHHTTCC
T ss_pred hcCCEEEEEEeCCccccCCH-HHHHHHHHHHHHhc-------CCCCEEEEEECcccCChHH----HHHHH-HHHHhcCCC
Confidence 46899999999987543222 22223334343311 1468999999999975432 22222 122344433
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
++.+||++|.|+++|++.|.+.+
T Consensus 312 ----~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 312 ----PIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ----CEECBTTTTBTHHHHHHHHHHHH
T ss_pred ----eEEEeCCCCcCHHHHHHHHHHHH
Confidence 88999999999999999987654
No 132
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.65 E-value=3.9e-08 Score=95.16 Aligned_cols=91 Identities=23% Similarity=0.187 Sum_probs=54.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|.|+.+... + .....++..+.... .....|+++|.||+||... .........| ....+
T Consensus 78 ~~~~~~~i~v~dv~~~~s-~--~~~~~~~~~l~~~~-----~~~~~piilV~NK~Dl~~~r~v~~~~~~~~----a~~~~ 145 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRAS-F--EKASELRIQLRRAR-----QTEDIPIILVGNKSDLVRXREVSVSEGRAX----AVVFD 145 (192)
T ss_dssp HHHCSEEEEEEETTCHHH-H--HHHHHHHHHHHHHT-----TTSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred cccCCEEEEEEECCCHHH-H--HHHHHHHHHHHHhh-----CCCCCeEEEEEechhhhccccccHHHHHHH----HHHhC
Confidence 345789999999987321 1 11122223333211 0124689999999999753 2222222222 23444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|...
T Consensus 146 ~----~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 146 X----KFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----ceEEeccccCCCHHHHHHHHHHH
Confidence 3 37889999999999999988754
No 133
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.65 E-value=3.9e-08 Score=92.21 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=55.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. .+.. . +.+.... ....|+++|+||+|+.... ...+..++ ...+
T Consensus 75 ~~~~~d~~i~v~d~~~~~--~~~~-~----~~l~~~~------~~~~p~ilv~nK~Dl~~~~--~~~~~~~~----~~~~ 135 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGV--MPQT-V----EAINHAK------AANVPIIVAINKMDKPEAN--PDRVMQEL----MEYN 135 (178)
T ss_dssp SCCCCCEEEEEEETTCCC--CHHH-H----HHHHHHG------GGSCCEEEEEETTTSSCSC--HHHHHHHH----TTTT
T ss_pred HHhhCCEEEEEEECCCCC--cHHH-H----HHHHHHH------hCCCCEEEEEECccCCcCC--HHHHHHHH----HhcC
Confidence 457799999999998742 2221 1 2222211 1346899999999998642 22233332 1211
Q ss_pred C--CCc---ceEEEEecccCcChhhHHHHHHhh
Q 005972 367 A--PKL---NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~--~~~---~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
. ... ..++.+||++|.|+++|++.|.+.
T Consensus 136 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 136 LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 1 001 258999999999999999988754
No 134
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.65 E-value=1.9e-08 Score=104.47 Aligned_cols=105 Identities=17% Similarity=0.061 Sum_probs=60.8
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+...+.. .+.++|++++|+|+........ . ...++..+.. ...|+++|+||+|+++.... +..
T Consensus 156 ~~~~~~~~--~~~~~d~iilvvd~~~~~~~~~-~-~~~i~~~~~~---------~~~~~i~v~NK~Dl~~~~~~---~~~ 219 (315)
T 1jwy_B 156 QIRRMVMA--YIKKQNAIIVAVTPANTDLANS-D-ALQLAKEVDP---------EGKRTIGVITKLDLMDKGTD---AME 219 (315)
T ss_dssp HHHHHHHH--HHHSTTEEEEEEEESSSCSTTC-S-HHHHHHHHCS---------SCSSEEEEEECTTSSCSSCC---CHH
T ss_pred HHHHHHHH--HHcCCCeEEEEEEecCcchhhh-H-HHHHHHHhCC---------CCCcEEEEEcCcccCCcchH---HHH
Confidence 44444444 6678999999999743221111 1 1233343332 34689999999999865431 223
Q ss_pred HHHHHHHhCCCCCcceEEEEeccc---CcChhhHHHHHHhhcCCC
Q 005972 357 WVRHRAKAGGAPKLNGVYLVSARK---DLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 357 wl~~~~k~~g~~~~~~V~~VSAkk---g~GveeLl~~I~~~l~~~ 398 (666)
+++.....++. .+..++.+||.+ +.|+.+|++.+.++++.+
T Consensus 220 ~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 220 VLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp HHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred HHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 32210001111 133455667777 889999999988877643
No 135
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.65 E-value=3.6e-08 Score=97.01 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=60.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC-------------CCCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-------------SQVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-------------k~~~~~~ 353 (666)
...++|++++|+|+.+... + ..+...++..+... . ...|++||+||+||.. .......
T Consensus 95 ~~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~~i~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPET-V-DSALKKWRTEILDY------C-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQ 165 (214)
T ss_dssp GCTTCSEEEEEEETTCTHH-H-HHHHTHHHHHHHHH------C-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred HcCCCeEEEEEEECcCHHH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHH
Confidence 4568999999999988421 1 11112233333332 1 3568999999999975 2333334
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcC-hhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLG-VRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~G-veeLl~~I~~~ 394 (666)
...|. +..+. ..++.+||++|.| +++|++.|.+.
T Consensus 166 ~~~~~----~~~~~---~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 166 GCAIA----KQLGA---EIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHH----HHHTC---SEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcCC---CEEEEeccCCCcccHHHHHHHHHHH
Confidence 44443 34453 3488999999998 99999988764
No 136
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.64 E-value=1.9e-08 Score=98.80 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=56.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.+... ...+. .++..+... . ...|+++|+||+||....... ....+. +..+.
T Consensus 85 ~~~~~~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~~~-~~~~~~----~~~~~ 149 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVT--YKNVP-NWHRDLVRV------C-ENIPIVLCGNKVDIKDRKVKA-KSIVFH----RKKNL 149 (221)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTHH-HHHHHHHHH------S-TTCCEEEEEECTTSSSCSSCG-GGCCHH----HHHTC
T ss_pred HhcCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------C-CCCCEEEEEECCccccccccH-HHHHHH----HHcCC
Confidence 457899999999987321 11111 122222221 1 346899999999998655432 122222 23343
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.++.+||++|.|+++|++.|.+.+
T Consensus 150 ----~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 150 ----QYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ----EEEECBGGGTBTTTHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 389999999999999999887653
No 137
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.64 E-value=1.7e-08 Score=95.84 Aligned_cols=87 Identities=28% Similarity=0.279 Sum_probs=56.3
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.++. .. ..++..+.. ...|+++|+||+|+............|. +.++.+
T Consensus 84 ~~~~~~i~v~d~~~~~-----~~-~~~~~~~~~---------~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~ 144 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE-----RN-LYLTLQLME---------MGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVK 144 (188)
T ss_dssp HCCSEEEEEEEGGGHH-----HH-HHHHHHHHT---------TTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSC
T ss_pred cCCCEEEEEecchhHH-----HH-HHHHHHHHh---------cCCCEEEEEEhhhccccccchHHHHHHH----HHhCCC
Confidence 3589999999987621 11 122222222 3468999999999964321111233332 334533
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
++.+||+++.|+++|++.|...+...
T Consensus 145 ----~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 145 ----VVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp ----EEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred ----eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999998776544
No 138
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.64 E-value=2.2e-08 Score=102.65 Aligned_cols=85 Identities=32% Similarity=0.370 Sum_probs=55.4
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.++|++++|+|+.++. . ...++..+... ...|+++|+||+|+............ +.+.+|.+
T Consensus 80 ~~~d~vi~v~D~~~~~-----~-~~~~~~~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~----l~~~lg~~ 141 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-----R-NLFLTLELFEM--------EVKNIILVLNKFDLLKKKGAKIDIKK----MRKELGVP 141 (271)
T ss_dssp TCCSEEEEEEEGGGHH-----H-HHHHHHHHHHT--------TCCSEEEEEECHHHHHHHTCCCCHHH----HHHHHSSC
T ss_pred cCCcEEEEEecCCcch-----h-hHHHHHHHHhc--------CCCCEEEEEEChhcCcccccHHHHHH----HHHHcCCc
Confidence 5799999999998731 1 11222222221 22689999999998743211111222 33445654
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
++++||++|.|+++|++.|...+
T Consensus 142 ----~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 142 ----VIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ----EEECBGGGTBTHHHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987653
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.63 E-value=1.1e-07 Score=105.79 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=59.0
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCC--C--CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDG--M--FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDL 344 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~g--s--~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDL 344 (666)
|++ +|.+.+.. .+..+|++|+|+|+.+... . .... ....+..+... +.+|+|+|+||+|+
T Consensus 119 PG~~~f~~~~~~------~~~~aD~~llVvDa~~g~~~~~~~~~~q-t~e~~~~~~~~--------~~~~iIvviNK~Dl 183 (483)
T 3p26_A 119 PGHRDFVPNAIM------GISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSL--------GIHNLIIAMNKMDN 183 (483)
T ss_dssp CCCGGGHHHHHH------HHTTCSEEEEEEECCC------CCCCHH-HHHHHHHHHHT--------TCCCEEEEEECGGG
T ss_pred CCcHHHHHHHHH------hhhhCCEEEEEEECCCCccccccchhhh-HHHHHHHHHHc--------CCCcEEEEEECcCc
Confidence 665 34444443 4567999999999988321 0 1111 12222222221 33579999999999
Q ss_pred CCCCC-ChHHHHHHHHHHHHhCCCCC-cceEEEEecccCcChhhH
Q 005972 345 LPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 345 Lpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~GveeL 387 (666)
..... ....+...+..+.+.+|... ...++++||++|.|+++|
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 86321 12223444444445555421 235899999999999863
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.62 E-value=9.4e-09 Score=112.88 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=81.5
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccccCchh-HHH---H
Q 005972 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFD-FDR---V 277 (666)
Q Consensus 203 ~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~iP~~d-~~~---~ 277 (666)
+-.+++|.+|+|||+| |++.+.+.+..+..+.+ ......... .....+.+. -+..|++. +.. .
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gt-------T~d~~~~~~-~~~~~~~l~----liDTpG~~d~~~l~~~ 102 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGT-------TTDPVYKSM-ELHPIGPVT----LVDTPGLDDVGELGRL 102 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC--------------------CCCCEEEE-EETTTEEEE----EEECSSTTCCCTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCe-------eeeeEEEEE-EECCCCeEE----EEECcCCCcccchhHH
Confidence 4567799999997755 99999887666555433 000000000 000000110 01124332 100 0
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHH
Q 005972 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
..+.... ....+|++++|+|+ . .. .....++..+.. .+.|+++|+||+|+...... ..
T Consensus 103 ~~~~~~~--~l~~aD~vllVvD~-~---~~--~~~~~~l~~l~~---------~~~piIvV~NK~Dl~~~~~~-----~~ 160 (423)
T 3qq5_A 103 RVEKARR--VFYRADCGILVTDS-A---PT--PYEDDVVNLFKE---------MEIPFVVVVNKIDVLGEKAE-----EL 160 (423)
T ss_dssp CHHHHHH--HHTSCSEEEEECSS-S---CC--HHHHHHHHHHHH---------TTCCEEEECCCCTTTTCCCT-----HH
T ss_pred HHHHHHH--HHhcCCEEEEEEeC-C---Ch--HHHHHHHHHHHh---------cCCCEEEEEeCcCCCCccHH-----HH
Confidence 0011111 34579999999998 2 12 223444455554 34689999999999876542 22
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.+.+.+.++. .++.+||++|.|+++|++.|.+.++
T Consensus 161 ~~~l~~~~g~----~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 161 KGLYESRYEA----KVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp HHHSSCCTTC----CCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred HHHHHHHcCC----CEEEEECCCCCCHHHHHHHHHHhhh
Confidence 2222233443 3889999999999999999998774
No 141
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.62 E-value=8.4e-08 Score=90.86 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=40.8
Q ss_pred CCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCc----ceEEEEecccCcChhhHHHHHHhhc
Q 005972 331 KLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKL----NGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 331 ~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~----~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
...|+++|+||+|+.... ...+..+ .+.++.+ + ..++.+||++|.|+++|++.|.+.+
T Consensus 121 ~~~piilv~nK~Dl~~~~--~~~~~~~----~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNV--QEVINFL----AEKFEVP-LSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp TTCCEEEEEECGGGCSCH--HHHHHHH----HHHHTCC-GGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcH--HHHHHHH----HHHhhhh-hhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 346899999999998653 2223333 3344432 2 2479999999999999999887653
No 142
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.62 E-value=2.6e-08 Score=97.50 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=75.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeE-e-CCceEEEECCCCCCCCcccccCChh-h
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-L-PAKAKLYDTPGLLHPHLMSMRLNRD-E 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~-l-~~~~~liDTPGi~~~~~~~~~L~~~-~ 474 (666)
..+|+++|.+|||||||+|+|++.... ..++..||+|++....... . +..+.|+||||+..+...... ... .
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~ 103 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRL----AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAA-KAHWE 103 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSS----SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTH-HHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcc----eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhh-HHHHH
Confidence 468999999999999999999986521 1235889999887554421 1 247899999998765432110 000 0
Q ss_pred HHHHHhhhh---cCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 475 QKMVEIRKE---LQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 475 ~~~~~~~ke---l~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
..+....+. ++...|.++....+.......++.+.....+++ .+.|+++..
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i---~v~nK~Dl~ 157 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH---SLLTKCDKL 157 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE---EEEECGGGS
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE---EEEeccccC
Confidence 111122333 455888888876555444445555554444543 455777753
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.61 E-value=1.3e-07 Score=105.34 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=85.8
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccc---cccCchh-HH
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE---NLIPDFD-FD 275 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~---~~iP~~d-~~ 275 (666)
+-+..+++|.+|+|||+| ++|.+........+.. .....+.+... .|..+...... +..|++. |.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~---~e~~~GiTi~~-------~~~~~~~~~~~i~iiDtPGh~~~~ 87 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLP---ESQKRGITIDI-------GFSAFKLENYRITLVDAPGHADLI 87 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC------------------------------CCCEEEETTEEEEECCCSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCccccccccc---ccccCccEEec-------ceEEEEECCEEEEEEECCChHHHH
Confidence 346668899999997655 9998776111000000 00001111111 11111101111 1237753 33
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHH
Q 005972 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+.+.. .+..+|++++|+|+.+ |..++.. + .+..+.. ...|+|+|+||+|+.+... ...+.
T Consensus 88 ~~~~~------~~~~aD~~ilVvda~~--g~~~qt~-e-~l~~~~~---------~~ip~IvviNK~Dl~~~~~-~~~~~ 147 (482)
T 1wb1_A 88 RAVVS------AADIIDLALIVVDAKE--GPKTQTG-E-HMLILDH---------FNIPIIVVITKSDNAGTEE-IKRTE 147 (482)
T ss_dssp HHHHH------HTTSCCEEEEEEETTT--CSCHHHH-H-HHHHHHH---------TTCCBCEEEECTTSSCHHH-HHHHH
T ss_pred HHHHH------HHhhCCEEEEEEecCC--CccHHHH-H-HHHHHHH---------cCCCEEEEEECCCcccchh-HHHHH
Confidence 33333 4567999999999987 4344322 2 2223332 2346799999999986321 11122
Q ss_pred HHHHHHHHhC-CCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 356 RWVRHRAKAG-GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 356 ~wl~~~~k~~-g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
..++.+.+.. ++. ...++++||++|.|+++|++.|.+.+
T Consensus 148 ~~l~~~l~~~~~~~-~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 148 MIMKSILQSTHNLK-NSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHHSSSGG-GCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccc-cceEEEEECcCCCCHHHHHHHHHHhh
Confidence 2233333344 321 23489999999999999999998753
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.61 E-value=1e-07 Score=108.89 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=82.8
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|...+.+ ++..+|.+++|+|+.+. ..+.... .+...+ . .+.|+|+|+||+|+....
T Consensus 79 PGh~dF~~ev~~------~l~~aD~aILVVDa~~g--v~~qt~~-~~~~~~-~---------~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 79 PGHVDFSYEVSR------SLAACEGALLVVDAGQG--VEAQTLA-NCYTAM-E---------MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp CCCGGGHHHHHH------HHHHCSEEEEEEETTTC--CCTHHHH-HHHHHH-H---------TTCEEEEEEECTTSTTCC
T ss_pred CCchHHHHHHHH------HHHHCCEEEEEEECCCC--CCHHHHH-HHHHHH-H---------CCCCEEEeeeccCccccc
Confidence 665 45544443 45568999999999883 3343322 222211 1 345899999999997643
Q ss_pred CChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCC-------ccEEEEee---cCCChhhHHHhh
Q 005972 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR-------GNVWVIGA---QNAGKSTLINTF 418 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~-------~~v~vvG~---~NVGKSTLiN~L 418 (666)
. ....+.+...++.. ...++++||++|.|+++|++.|.+.++.. ...+++.. +++|+.++++.+
T Consensus 140 --~---~~v~~ei~~~lg~~-~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~ 213 (599)
T 3cb4_D 140 --P---ERVAEEIEDIVGID-ATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIK 213 (599)
T ss_dssp --H---HHHHHHHHHHTCCC-CTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEE
T ss_pred --H---HHHHHHHHHHhCCC-cceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEE
Confidence 1 22223333445542 34689999999999999999998887642 23445444 889999988877
Q ss_pred hcc
Q 005972 419 AKK 421 (666)
Q Consensus 419 ~~~ 421 (666)
-+.
T Consensus 214 sG~ 216 (599)
T 3cb4_D 214 NGT 216 (599)
T ss_dssp ESC
T ss_pred eCE
Confidence 654
No 145
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.60 E-value=1.2e-07 Score=102.92 Aligned_cols=109 Identities=23% Similarity=0.222 Sum_probs=66.1
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEECCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPS 347 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk 347 (666)
|++ +|.+.+.. .+..+|++++|+|+.+ +..+.. ...+..+.. ...| +++|+||+|+...
T Consensus 83 pG~~~f~~~~~~------~~~~aD~~ilVvda~~--g~~~qt--~~~l~~~~~---------~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 83 PGHADYIKNMIT------GAAQMDGAILVVSAAD--GPMPQT--REHILLARQ---------VGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp CCSGGGHHHHHH------HHTTCSSEEEEEETTT--CCCHHH--HHHHHHHHH---------TTCCCEEEEEECGGGCCC
T ss_pred CChHHHHHHHHH------HHHHCCEEEEEEECCC--CCcHHH--HHHHHHHHH---------cCCCEEEEEEECccccCc
Confidence 665 45554443 3457999999999988 334322 223333332 1235 8899999999852
Q ss_pred CCChHHHHHHHHHHHHhCCCC-CcceEEEEecccCcC------------------hhhHHHHHHhhcCC
Q 005972 348 QVSPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKDLG------------------VRNLLAFIKELAGP 397 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~G------------------veeLl~~I~~~l~~ 397 (666)
......+..-++.+.+..++. ....++++||++|.| +.+|++.|.++++.
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 211111222233344555531 013489999999987 78888888887653
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.59 E-value=2e-09 Score=104.16 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=51.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.+... .......| ...+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 168 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQES--FNNV-KQWLQEIDRY------ASENVNKLLVGNKCDLTTKKVVDYTTAKEF----ADSL 168 (199)
T ss_dssp --CCCSEEEECC-CCCSHH--HHHH-HHHHHHHHSC------C-CCSEEEEC-CCSSCC--CCCCSCC-CHH----HHTT
T ss_pred HhhcCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------ccCCCCEEEEEECccCCccccCCHHHHHHH----HHHc
Confidence 4567999999999988421 1111 2222223221 113568999999999985432 11122333 2445
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+.+ ++.+||++|.|+++|++.|.+.+.
T Consensus 169 ~~~----~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 GIP----FLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TCC----BCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCe----EEEEECCCCCCHHHHHHHHHHHHH
Confidence 543 788999999999999999987654
No 147
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.59 E-value=4.5e-08 Score=93.49 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=55.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..+++++++|+|+.+...++ ..+..++..... .. ...|+++|+||+|+..............+.+.+..+.
T Consensus 77 ~~~~~~~i~v~d~~~~~~s~-----~~~~~~~~~~~~---~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 77 MTQRALYLAVYDLSKGQAEV-----DAMKPWLFNIKA---RA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHHSEEEEEEEEGGGCHHHH-----HTHHHHHHHHHH---HC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred ccCCcEEEEEEeCCcchhHH-----HHHHHHHHHHHh---hC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 44678999999998732111 112223322110 01 2468999999999964321000111222222233443
Q ss_pred CCcceEEEEecccCc-ChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDL-GVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~-GveeLl~~I~~~l 395 (666)
+....++.+||+++. |+++|++.|.+.+
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHH
Confidence 212247899999997 9999999887653
No 148
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.58 E-value=4.2e-08 Score=93.70 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=65.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH-
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK- 476 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~- 476 (666)
..+|+++|.+|||||||+|+|++..... ..+..||+|++...+. ++.++.++||||+..+...... ...-..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~t~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~ 95 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLA----RTSSKPGKTQTLNFYI--INDELHFVDVPGYGFAKVSKSE-REAWGRM 95 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-----------------CCEEEEE--ETTTEEEEECCCBCCCSSCHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc----ccCCCCCceeeEEEEE--ECCcEEEEECCCCCccccCHHH-HHHHHHH
Confidence 4689999999999999999999764211 2357889998876554 4668999999998765432110 000011
Q ss_pred HHHhhhh---cCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 477 MVEIRKE---LQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 477 ~~~~~ke---l~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.....+. ++...|.++.........+..+..+.....++ +.+.|+.+..
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~---i~v~nK~Dl~ 147 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV---IVIATKADKI 147 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE---EEEEECGGGS
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE---EEEEECcccC
Confidence 1112222 36677777776654444433334443333444 3455677653
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.99 E-value=6.5e-09 Score=100.74 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=56.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH---------HHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++++|+|+.+.... ..+...++..+... . ...|+++|+||+|+.+.......+ ...
T Consensus 98 ~~~~~d~iilv~D~~~~~s~--~~~~~~~~~~l~~~------~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASF--ENVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 45678999999999885422 12221233333321 0 246899999999998643211000 001
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
...+.+..+. ..++.+||++|.|+++|++.|.+
T Consensus 169 ~~~~~~~~~~---~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 169 GLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 1112223332 24789999999999999998865
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.56 E-value=8.9e-08 Score=97.12 Aligned_cols=106 Identities=9% Similarity=0.015 Sum_probs=61.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCccc-ccCChh-h
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMS-MRLNRD-E 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~-~~L~~~-~ 474 (666)
..+|++||.+|||||||+|+|++....... ....|||+.+........ ..+.|+||||+....... ..+... .
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~----~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSR----LGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC-------------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCcccc----CCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 368999999999999999999987654332 123368877655443333 368999999997655432 111111 1
Q ss_pred HHHHHhhhhcCceeEEecCCCcccccceEEEeec
Q 005972 475 QKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLD 508 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l 508 (666)
..+....+..+...++++.+. +.......++.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l 129 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQV 129 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHH
Confidence 111122366777888888764 433343334443
No 151
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.56 E-value=3.5e-08 Score=95.96 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=58.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC---------ChHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV---------SPTRLDRW 357 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~---------~~~~L~~w 357 (666)
...++|++++|+|+.+... ...+...++..+... . ...|++||+||+||..... .......|
T Consensus 77 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKAS--YENVLKKWMPELRRF------A-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH
T ss_pred hccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH
Confidence 4568999999999987321 111111223333321 1 2468999999999975421 22223333
Q ss_pred HHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.+.++ ...++.+||++|.|+++|++.|.+.+
T Consensus 148 ----~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 148 ----RKQIG---AAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHcC---CceEEEccCCCCCCHHHHHHHHHHHH
Confidence 34445 23489999999999999999887653
No 152
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.56 E-value=2.1e-07 Score=87.13 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC--CChHHHHHHHHHHHHh
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ--VSPTRLDRWVRHRAKA 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~--~~~~~L~~wl~~~~k~ 364 (666)
....+|++++|+|+.+... ...+. .++..+..... .......|+++|+||+|+.... .....+..|. +.
T Consensus 78 ~~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~~~--~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~----~~ 148 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASS--FENIK-SWRDEFLVHAN--VNSPETFPFVILGNKIDAEESKKIVSEKSAQELA----KS 148 (182)
T ss_dssp CSTTCCEEEEEEETTCHHH--HHTHH-HHHHHHHHHHC--CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHH----HH
T ss_pred HhhcCCEEEEEEECCChHH--HHHHH-HHHHHHHHHhc--ccCcCCCcEEEEEECCccccccccCCHHHHHHHH----Hh
Confidence 4678999999999987421 11111 11222221100 0001346899999999996432 2233344442 22
Q ss_pred CCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.+ ...++.+||++|.|+++|++.|.+.
T Consensus 149 ~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 149 LG---DIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp TT---SCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cC---CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 22 1238999999999999999988754
No 153
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.55 E-value=3.1e-07 Score=101.63 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=51.7
Q ss_pred cccccCEEEEEEecCCCCCCCcH------HHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPK------RAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVR 359 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~------~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~ 359 (666)
.+..+|++|+|+|+.+.. .+. .. ...+..+... +.+++|+|+||+|+.+... ....+...++
T Consensus 105 ~~~~aD~~ilVvda~~g~--~~~sf~~~~qt-~~~~~~~~~~--------~v~~iivviNK~Dl~~~~~~~~~~i~~~~~ 173 (458)
T 1f60_A 105 GTSQADCAILIIAGGVGE--FEAGISKDGQT-REHALLAFTL--------GVRQLIVAVNKMDSVKWDESRFQEIVKETS 173 (458)
T ss_dssp SSSCCSEEEEEEECSHHH--HHHHTCTTSHH-HHHHHHHHHT--------TCCEEEEEEECGGGGTTCHHHHHHHHHHHH
T ss_pred hhhhCCEEEEEEeCCcCc--cccccCcchhH-HHHHHHHHHc--------CCCeEEEEEEccccccCCHHHHHHHHHHHH
Confidence 567899999999998621 110 11 1122222211 2345999999999984221 1112222333
Q ss_pred HHHHhCCCCC-cceEEEEecccCcChhhHH
Q 005972 360 HRAKAGGAPK-LNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 360 ~~~k~~g~~~-~~~V~~VSAkkg~GveeLl 388 (666)
.+.+.+++.. ...++++||++|.|+.++.
T Consensus 174 ~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 174 NFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp HHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred HHHHHcCCCccCceEEEeecccCcCccccc
Confidence 3334445310 1349999999999998664
No 154
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.55 E-value=7.2e-08 Score=91.81 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+... ......
T Consensus 75 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~i~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEF------C-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHH------C-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH
Confidence 4568999999999987321 111112222333321 1 34689999999999742 222233
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecc-cCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSAR-KDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAk-kg~GveeLl~~I~~~ 394 (666)
...|. +.++ ...++.+||+ ++.|+++|++.|.+.
T Consensus 146 ~~~~~----~~~~---~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 146 GANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHHHH----HHHT---CSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcC---CcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 34443 3334 2248899998 689999999988754
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.55 E-value=1.4e-07 Score=95.39 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=86.7
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceecccccccc---cCchh----
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~---iP~~d---- 273 (666)
-+..+++|.||+|||+| |++.+.+..+....+ ...+..|.. +.+.....++. .|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~--------~~~t~~~~~-------~~~~~~~~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGS--------QTLTKTCSK-------SQGSWGNREIVIIDTPDMFSWKD 86 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTS--------CCCCCSCEE-------EEEEETTEEEEEEECCGGGGSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCC--------CceeeeeEE-------EEEEeCCCEEEEEECcCCCCCCC
Confidence 45667799999996655 999987743221111 001111211 11111111111 25432
Q ss_pred ----HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEE-CCCCCCCC
Q 005972 274 ----FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGT-KVDLLPSQ 348 (666)
Q Consensus 274 ----~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlN-KiDLLpk~ 348 (666)
+.+.+.+.+.. ....+|++|+|+|+.++. .....++..+.+... .. ...|+++|+| |+|+....
T Consensus 87 ~~~~~~~~i~~~~~~--~~~~~d~il~V~d~~~~~-----~~~~~~~~~l~~~~~-~~---~~~~~i~vv~nK~Dl~~~~ 155 (260)
T 2xtp_A 87 HCEALYKEVQRCYLL--SAPGPHVLLLVTQLGRYT-----SQDQQAAQRVKEIFG-ED---AMGHTIVLFTHKEDLNGGS 155 (260)
T ss_dssp CCHHHHHHHHHHHHH--HTTCCSEEEEEEETTCCC-----HHHHHHHHHHHHHHC-GG---GGGGEEEEEECGGGGTTCC
T ss_pred CHHHHHHHHHHHHHh--cCCCCcEEEEEEeCCCCC-----HHHHHHHHHHHHHhC-ch---hhccEEEEEEcccccCCcc
Confidence 11233333333 456799999999998632 223444455554311 00 0236788888 99998532
Q ss_pred CChHHHHHHHH--------HHHHhCCCCC--cceEEEEecccCcChhhHHHHHHhhcC
Q 005972 349 VSPTRLDRWVR--------HRAKAGGAPK--LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 349 ~~~~~L~~wl~--------~~~k~~g~~~--~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+..|++ ...+..+... +.. +++||++|.|+++|++.|.+.++
T Consensus 156 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 156 -----LMDYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp -----HHHHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHH
Confidence 233221 1233443210 222 68999999999999999887543
No 156
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.54 E-value=3.3e-07 Score=87.86 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=57.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + ..+. .++..+.... .......|+++|+||+|+... .........|. +..+
T Consensus 89 ~~~~~~~ilv~d~~~~~s-~-~~~~-~~~~~i~~~~---~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 158 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQS-F-DSSS-SYLELLALHA---KETQRSIPALLLGNKLDMAQYRQVTKAEGVALA----GRFG 158 (187)
T ss_dssp HTTCSEEEEEEETTCHHH-H-HHHH-HHHHHHHHHH---HHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHHh---hccCCCCCEEEEEECcchhhcCccCHHHHHHHH----HHcC
Confidence 356899999999987321 1 1111 2222222211 000134689999999999753 33333444443 3445
Q ss_pred CCCcceEEEEec-ccCcChhhHHHHHHhh
Q 005972 367 APKLNGVYLVSA-RKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSA-kkg~GveeLl~~I~~~ 394 (666)
. .++.+|| ++|.|+++|++.|.+.
T Consensus 159 ~----~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 159 C----LFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp C----EEEECCSSSCSHHHHHHHHHHHHH
T ss_pred C----cEEEEeecCccccHHHHHHHHHHH
Confidence 3 3889999 8999999999988764
No 157
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.53 E-value=3e-08 Score=110.65 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCC-CCCcccccCChhhH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL-HPHLMSMRLNRDEQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~-~~~~~~~~L~~~~~ 475 (666)
+.+|+++|.||||||||+|+|++..... ++..||||++.+.....++ ..+.|+||||+. .+......+. ..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~-----vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~g--i~ 315 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAI-----VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLG--IE 315 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCC-----CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCC--HH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCc-----cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHH--HH
Confidence 4689999999999999999999865333 3689999998654433333 368999999997 5432211111 12
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
......+..+...|+++............++.+. ..+++ .+.||+++
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~--~~pii---vV~NK~DL 362 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIK--NKRYL---VVINKVDV 362 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHT--TSSEE---EEEEECSS
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhc--CCCEE---EEEECccc
Confidence 2334567788889998876544333332333332 23432 34566665
No 158
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.53 E-value=1.9e-07 Score=96.20 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=59.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+.+|+++|.+|||||||+|+|++.. .. ++.+||+|.+.......+ +..+.++||||+..........+.++..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~-----v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i 76 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QR-----VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI 76 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EE-----EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cc-----cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHH
Confidence 3579999999999999999999865 33 358999998875544333 3468899999997655322111112211
Q ss_pred HH--HhhhhcCceeEEecCCC
Q 005972 477 MV--EIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~--~~~kel~~~~f~l~~~~ 495 (666)
.. ......+...+.++..+
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~ 97 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASN 97 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGG
T ss_pred HHHHHhhcCCCEEEEEecCCC
Confidence 11 12356677777777654
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.53 E-value=4.1e-07 Score=99.77 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=58.8
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|.+.+.. .+..+|++++|+|+.+ +..++. .+ .+..+... +.+|+|+|+||+|+.+..
T Consensus 112 pGh~~f~~~~~~------~~~~aD~~ilVvDa~~--g~~~qt-~~-~l~~~~~~--------~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 112 PGHEQYTRNMAT------GASTCDLAIILVDARY--GVQTQT-RR-HSYIASLL--------GIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp CCSGGGHHHHHH------HHTTCSEEEEEEETTT--CSCHHH-HH-HHHHHHHT--------TCCEEEEEEECTTTTTSC
T ss_pred CChHHHHHHHHH------HHhhCCEEEEEEECCC--CCcHHH-HH-HHHHHHHc--------CCCeEEEEEEcCcCCccc
Confidence 665 35555543 3467999999999998 334332 22 22222221 335799999999998642
Q ss_pred C-ChHHHHHHHHHHHHhCCCC-CcceEEEEecccCcChhh
Q 005972 349 V-SPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKDLGVRN 386 (666)
Q Consensus 349 ~-~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~Gvee 386 (666)
. ....+...++.+.+.++.. ....++++||++|.|+++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 1 1111223334444556521 123589999999999987
No 160
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.51 E-value=2e-06 Score=82.35 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=55.8
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC---CCCChHHHHHHHHHHHHhC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~ 365 (666)
..+|++++|+|+.+... ...+ ..++..+..... ....|+++|+||+||.. .......+..| .+.+
T Consensus 84 ~~~~~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~~-----~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~----~~~~ 151 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEIS--FQTV-YNYFLRLCSFRN-----ASEVPMVLVGTQDAISAANPRVIDDSRARKL----STDL 151 (184)
T ss_dssp HHCSEEEEEEETTCHHH--HHHH-HHHHHHHHTTSC-----GGGSCEEEEEECTTCBTTBCCCSCHHHHHHH----HHHT
T ss_pred cCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhcC-----CCCCCEEEEEECcccccccccccCHHHHHHH----HHHc
Confidence 34899999999987321 1111 122233322100 02358999999999952 22333334444 3444
Q ss_pred CCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
+ ...++.+||++|.|+++|++.|.+.
T Consensus 152 ~---~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 152 K---RCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp T---TCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred C---CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 4 2248899999999999999988653
No 161
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.51 E-value=1.7e-07 Score=90.40 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=58.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh---HHHHH-HHHHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP---TRLDR-WVRHRAK 363 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~---~~L~~-wl~~~~k 363 (666)
..++|++++|+|+.+. .......+..++..... .....|++||+||+||++..... ..+.. ..+.+.+
T Consensus 93 ~~~~~~~i~v~d~~~~----~~~~~~~~~~~l~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD----YMEALTRLHITVSKAYK----VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHTCSEEEEEEETTSC----CHHHHHHHHHHHHHHHH----HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCc----hHHHHHHHHHHHHHHHh----cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 4568999999999983 12333444455554211 11356999999999998643211 11111 1222333
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.........++.+||++ .|++++++.|.+.
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 11000112488999999 9999999988653
No 162
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.51 E-value=9.4e-08 Score=93.62 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=57.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+. ......
T Consensus 96 ~~~~~d~~ilv~D~~~~~s--~~~~~~~~~~~i~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEF------C-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHH------C-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHH
Confidence 4568999999999987321 111112222333321 1 34689999999999742 222233
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecc-cCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSAR-KDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAk-kg~GveeLl~~I~~~ 394 (666)
...|. +.++ ...++.+||+ ++.|+++|++.|.+.
T Consensus 167 ~~~~~----~~~~---~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 167 GANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHHH----HHHT---CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcC---CCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 33332 3334 2248899999 689999999988754
No 163
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.51 E-value=1e-07 Score=107.30 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.++. . ...++..+.... ...|+|+|+||+|+..... ....+.. .....+
T Consensus 119 l~~~d~ii~V~D~s~~~-----~-~~~~~~~l~~~~-------~~~pvilV~NK~Dl~~~~~v~~~~~~~----~~~~~~ 181 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDS-----N-KHYWLRHIEKYG-------GKSPVIVVMNKIDENPSYNIEQKKINE----RFPAIE 181 (535)
T ss_dssp HHSSEEEEEEECGGGGG-----G-HHHHHHHHHHHS-------SSCCEEEEECCTTTCTTCCCCHHHHHH----HCGGGT
T ss_pred ccCCcEEEEEEeCCCch-----h-HHHHHHHHHHhC-------CCCCEEEEEECCCcccccccCHHHHHH----HHHhcC
Confidence 34689999999998741 2 233444454421 3468999999999986543 2222222 223444
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
. .++.+||++|.|+++|++.|.+.+..
T Consensus 182 ~----~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 182 N----RFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp T----CEEECCC-----CTTHHHHHHHHHTC
T ss_pred C----ceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3 29999999999999999999876654
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.50 E-value=8.2e-07 Score=96.54 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=54.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++++|+|+.+.. ..++. .+.+ ..+... +.+|+|+|+||+|+.+........... +.+.+...
T Consensus 101 ~~~~~D~~ilVvda~~g~-~~~qt-~e~l-~~~~~l--------~~~~iivv~NK~Dl~~~~~~~~~~~~i-~~~l~~~~ 168 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPC-PQPQT-KEHL-MALEIL--------GIDKIIIVQNKIDLVDEKQAEENYEQI-KEFVKGTI 168 (408)
T ss_dssp TCSCCSEEEEEEETTSCS-SCHHH-HHHH-HHHHHT--------TCCCEEEEEECTTSSCTTTTTTHHHHH-HHHHTTST
T ss_pred hHhhCCEEEEEEECCCCC-CCchh-HHHH-HHHHHc--------CCCeEEEEEEccCCCCHHHHHHHHHHH-HHHHhhcC
Confidence 456799999999999731 13322 2222 222221 335799999999998754322222222 22222221
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.. ...++++||++|.|+++|++.|.+.++
T Consensus 169 ~~-~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 169 AE-NAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TT-TCCEEEC------CHHHHHHHHHHHSC
T ss_pred CC-CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 11 224899999999999999999988654
No 165
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.50 E-value=2.3e-07 Score=94.87 Aligned_cols=90 Identities=22% Similarity=0.250 Sum_probs=58.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|+++|.+|||||||+|+|++.. .. ++.+||+|.+.......+++ .+.++||||+.........-+.++....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~-----v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~ 76 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QR-----VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAA 76 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EE-----EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CC-----ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHH
Confidence 68999999999999999999864 22 35889999886654433333 6789999999755431100011121111
Q ss_pred Hhh--hhcCceeEEecCCC
Q 005972 479 EIR--KELQPRTYRVKARQ 495 (666)
Q Consensus 479 ~~~--kel~~~~f~l~~~~ 495 (666)
... ...+...+.++..+
T Consensus 77 ~~~~~~~~d~vi~VvDas~ 95 (256)
T 3iby_A 77 QSVIDLEYDCIINVIDACH 95 (256)
T ss_dssp HHHHHSCCSEEEEEEEGGG
T ss_pred HHHhhCCCCEEEEEeeCCC
Confidence 222 56777788887654
No 166
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.50 E-value=1.1e-07 Score=90.15 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=70.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++.... ..++.+|+|++..... .+.++.++||||+......... ......+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~t~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~-~~~~~~~ 94 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIA-----FVSKTPGKTRSINFYL--VNSKYYFVDLPGYGYAKVSKKE-RMLWKRL 94 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCS-----CCCSSCCCCCCEEEEE--ETTTEEEEECCCBSSSCCCHHH-HHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccc-----cccCCCCCccCeEEEE--ECCcEEEEECCCCccccCChhh-HHHHHHH
Confidence 358999999999999999999987532 2357889998865543 4668999999997654321100 0000111
Q ss_pred -HHhh---hhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 478 -VEIR---KELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 478 -~~~~---kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.... ..++...|.++............+..+.....++ +.+.||.+..
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~---i~v~nK~Dl~ 146 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF---TIVLTKMDKV 146 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE---EEEEECGGGS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE---EEEEEChhcC
Confidence 1122 2335667777765544333333333444333444 3456777753
No 167
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.50 E-value=4.6e-07 Score=90.34 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=59.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
..+++.+++|.|+.+... + ..+.. .+..+... .....|++||.||+||... .........|. +.++
T Consensus 83 ~~~a~~~ilv~di~~~~S-f-~~i~~-~~~~i~~~------~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a----~~~~ 149 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNS-F-QQTTK-WIDDVRTE------RGSDVIIMLVGNKTDLADKRQVSIEEGERKA----KELN 149 (216)
T ss_dssp HTTCSEEEEEEETTCHHH-H-HTHHH-HHHHHHHH------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred hccccEEEEEeecchhHH-H-HHHHH-HHHHHHHh------cCCCCeEEEEeeccchHhcCcccHHHHhhHH----HHhC
Confidence 457899999999987431 1 11222 22223221 1145689999999999754 34444444443 4455
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.+ .+.+||++|.|++++++.|...+
T Consensus 150 ~~----~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 150 VM----FIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp CE----EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred Ce----eEEEeCCCCcCHHHHHHHHHHHH
Confidence 42 77899999999999999887654
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.49 E-value=3.8e-07 Score=99.21 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=60.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++++|+|+.+.. ..++. .+.+ ..+... +.+|+|+|+||+|+.+.......+.. ++.+.+...
T Consensus 103 ~~~~~D~~ilVvda~~g~-~~~qt-~e~l-~~~~~~--------~~~~iivviNK~Dl~~~~~~~~~~~~-i~~~l~~~~ 170 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPC-PRPQT-REHL-MALQII--------GQKNIIIAQNKIELVDKEKALENYRQ-IKEFIEGTV 170 (410)
T ss_dssp CGGGCSEEEEEEETTSCS-SCHHH-HHHH-HHHHHH--------TCCCEEEEEECGGGSCHHHHHHHHHH-HHHHHTTST
T ss_pred hhhhCCEEEEEEECCCCC-CChhH-HHHH-HHHHHc--------CCCcEEEEEECccCCCHHHHHHHHHH-HHHHHHhcC
Confidence 456799999999999731 13332 2222 223221 34579999999999864321111222 222222211
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.. ...++++||++|.|+++|++.|.+.++.
T Consensus 171 ~~-~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 171 AE-NAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp TT-TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cC-CCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 11 2349999999999999999999886653
No 169
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.47 E-value=1.9e-07 Score=96.84 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-------------CCChHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+... . ...|+++|+||+||.+. ......
T Consensus 223 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPAS--FHHVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hccCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhh------C-CCCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence 4568999999999987321 111111223333321 1 25689999999999753 122222
Q ss_pred HHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
...| .+..+ +..++.+||++|.|+++|++.|.+.
T Consensus 294 ~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 294 GLAM----AKEIG---AVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHH----HHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHH----HHHcC---CcEEEEecCCCCcCHHHHHHHHHHH
Confidence 2333 34455 2358999999999999999988764
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.47 E-value=6.3e-07 Score=86.75 Aligned_cols=93 Identities=17% Similarity=0.045 Sum_probs=57.3
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..++.+++|+|+.+... ..+..+..++.. ...|+++|.||+|+++.... .+....++.+....+.
T Consensus 107 ~~~~~~~~v~d~~~~~~----~~~~~~~~~~~~---------~~~~~~~v~nK~D~~s~~~~-~~~~~~~~~~~~~~~~- 171 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLK----DLDQQMIEWAVD---------SNIAVLVLLTKADKLASGAR-KAQLNMVREAVLAFNG- 171 (210)
T ss_dssp TTEEEEEEEEETTSCCC----HHHHHHHHHHHH---------TTCCEEEEEECGGGSCHHHH-HHHHHHHHHHHGGGCS-
T ss_pred hcccEEEEEEECCCCCc----hhHHHHHHHHHH---------cCCCeEEEEecccCCCchhH-HHHHHHHHHHHHhcCC-
Confidence 45788999999987431 122334444433 23578899999999864321 1111122222223221
Q ss_pred CcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
...++++||+++.|+++|++.|.++...
T Consensus 172 -~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 -DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp -CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred -CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 2347899999999999999999876543
No 171
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.46 E-value=1.8e-08 Score=105.37 Aligned_cols=115 Identities=20% Similarity=0.159 Sum_probs=70.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC-CCCcccccCChhhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL-HPHLMSMRLNRDEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~-~~~~~~~~L~~~~~~ 476 (666)
+.|++||.+|||||||+|+|++..... ++..||||++.+...... +.++.++||||+. .+.. .+ ...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i-----~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---~l---~~~ 77 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISI-----TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---AI---NRL 77 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEE-----CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH---HH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccc-----cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh---hH---HHH
Confidence 579999999999999999999865332 357899998754322112 2367899999986 2221 01 001
Q ss_pred H----HHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 477 M----VEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 477 ~----~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
+ ....+..+...|.++... +..+....++.+.....++++ +.|+++..
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~il---vlNK~D~~ 129 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVIL---AVNKVDNV 129 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEE---EEESTTTC
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEE---EEECcccC
Confidence 1 112345566677788765 544444444555543455433 34777764
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.46 E-value=9.2e-07 Score=95.87 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=65.5
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEECCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPS 347 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk 347 (666)
|++ +|.+.|.. .+..+|++++|+|+.+ +..++. .+ .+..+.. ...| +|+|+||+|+...
T Consensus 74 pG~~~f~~~~~~------~~~~aD~~ilVvda~~--g~~~qt-~e-~l~~~~~---------~~vp~iivviNK~Dl~~~ 134 (397)
T 1d2e_A 74 PGHADYVKNMIT------GTAPLDGCILVVAAND--GPMPQT-RE-HLLLARQ---------IGVEHVVVYVNKADAVQD 134 (397)
T ss_dssp SSHHHHHHHHHH------TSSCCSEEEEEEETTT--CSCHHH-HH-HHHHHHH---------TTCCCEEEEEECGGGCSC
T ss_pred CChHHHHHHHHh------hHhhCCEEEEEEECCC--CCCHHH-HH-HHHHHHH---------cCCCeEEEEEECcccCCC
Confidence 776 34444432 4567999999999998 434432 22 2233332 2235 7899999999852
Q ss_pred CCChHHHHHHHHHHHHhCCCC-CcceEEEEecccCcC----------hhhHHHHHHhhcCC
Q 005972 348 QVSPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKDLG----------VRNLLAFIKELAGP 397 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~G----------veeLl~~I~~~l~~ 397 (666)
......+..-++.+.+..++. ....++++||++|.| +.+|++.|.++++.
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 135 SEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 211111222233344555531 012589999999774 88999999887654
No 173
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.46 E-value=1.5e-07 Score=96.71 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=45.3
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCC
Q 005972 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPK 369 (666)
Q Consensus 290 ~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~ 369 (666)
.+|+++++++.... +.. ..+..+++.+. ...|+|+|+||+|++...... .....+.......+++
T Consensus 115 r~~~~l~~i~~~~~-~~~--~~d~~~l~~l~----------~~~pvi~V~nK~D~~~~~e~~-~~~~~i~~~l~~~~i~- 179 (274)
T 3t5d_A 115 RVQCCLYFIAPSGH-GLK--PLDIEFMKRLH----------EKVNIIPLIAKADTLTPEECQ-QFKKQIMKEIQEHKIK- 179 (274)
T ss_dssp CCCEEEEEECSCCS-SCC--HHHHHHHHHHT----------TTSCEEEEESSGGGSCHHHHH-HHHHHHHHHHHHTTCC-
T ss_pred ceeEEEEEecCCCC-CCC--HHHHHHHHHHh----------ccCCEEEEEeccCCCCHHHHH-HHHHHHHHHHHHcCCe-
Confidence 47788888876542 222 23344444443 246899999999998643311 1112222233344543
Q ss_pred cceEEEEecccCcChhhHHHHHHhhcC
Q 005972 370 LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 370 ~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
++.+||+++.|+++|.+.|.+.+|
T Consensus 180 ---v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 180 ---IYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp ---CCCC-----------CHHHHHTCS
T ss_pred ---EEcCCCCCChhHHHHHHHHhcCCC
Confidence 788999999999999999988654
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.46 E-value=8.8e-07 Score=101.19 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=67.7
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|...+.+ ++..+|.+|+|+|+.+ |..++.. ..+ ..+.. .+.|+|+|+||+|+....
T Consensus 81 PGh~dF~~ev~r------~l~~aD~aILVVDa~~--gv~~qt~-~~~-~~a~~---------~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 81 PGHVDFSYEVSR------ALAACEGALLLIDASQ--GIEAQTV-ANF-WKAVE---------QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp CCSGGGHHHHHH------HHHTCSEEEEEEETTT--BCCHHHH-HHH-HHHHH---------TTCEEEEEEECTTSTTCC
T ss_pred CCcHhHHHHHHH------HHHhCCEEEEEEECCC--CccHHHH-HHH-HHHHH---------CCCCEEEEEeccCccccC
Confidence 665 45544443 3456899999999998 3334332 222 11111 345899999999997543
Q ss_pred CChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC
Q 005972 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.....+.+...++.. ...++++||++|.|+++|++.|.+.++.
T Consensus 142 -----~~~v~~el~~~lg~~-~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 142 -----VDRVKKQIEEVLGLD-PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp -----HHHHHHHHHHTSCCC-GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -----HHHHHHHHHHhhCCC-cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 223333444555643 3468999999999999999999887764
No 175
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.46 E-value=1.5e-07 Score=98.58 Aligned_cols=98 Identities=15% Similarity=0.053 Sum_probs=56.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh---HHHHHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP---TRLDRWVRHRAK 363 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~---~~L~~wl~~~~k 363 (666)
...++|++++|+|+.+... ... ...+..++..... .. ...|+++|+||+|+....... .....-++.+.+
T Consensus 77 ~~~~ad~vi~V~D~t~~~s--~~~-l~~~~~~l~~l~~---~~-~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~ 149 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEV--LKD-IEIFAKALKQLRK---YS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS 149 (307)
T ss_dssp HHTTCSEEEEEEETTCSCH--HHH-HHHHHHHHHHHHH---HC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCEEEEEEECCChhh--HHH-HHHHHHHHHHHHH---hC-CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH
Confidence 3467999999999988531 111 1222233333210 01 346999999999998632211 012233444556
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+|.+ ...++.+||++ .|+.+++..+..
T Consensus 150 ~~g~~-~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 150 EFGFP-NLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp TTTCC-SCEEEECCTTS-SHHHHHHHHHHH
T ss_pred HcCCC-CeEEEEeeecC-ChHHHHHHHHHH
Confidence 66632 13589999999 677666665544
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.43 E-value=9.4e-07 Score=97.01 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=58.9
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcH-----HHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPK-----RAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~-----~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
|++ +|...+.. .+..+|++++|+|+.+ +++.. ...+..+..+... +.+++|+|+||+|
T Consensus 92 pG~~~f~~~~~~------~~~~aD~~ilVvDa~~--gsfe~~~~~~~qt~~~~~~~~~~--------~~~~iivviNK~D 155 (435)
T 1jny_A 92 PGHRDFVKNMIT------GASQADAAILVVSAKK--GEYEAGMSVEGQTREHIILAKTM--------GLDQLIVAVNKMD 155 (435)
T ss_dssp SSSTTHHHHHHH------TSSCCSEEEEEEECST--THHHHHHSTTCHHHHHHHHHHHT--------TCTTCEEEEECGG
T ss_pred CCcHHHHHHHHh------hhhhcCEEEEEEECCC--CccccccccchHHHHHHHHHHHc--------CCCeEEEEEEccc
Confidence 665 45444433 4567999999999998 42210 0011122222221 3356899999999
Q ss_pred CCCCCCCh---HHHHHHHHHHHHhCCCCC-cceEEEEecccCcChhhH
Q 005972 344 LLPSQVSP---TRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 344 LLpk~~~~---~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~GveeL 387 (666)
+.+..... ..+...++.+.+..++.. ...++++||++|.|+.++
T Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 156 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 98743222 223333444455556321 135899999999999743
No 177
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.42 E-value=2.2e-07 Score=88.14 Aligned_cols=61 Identities=34% Similarity=0.422 Sum_probs=45.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
+.+|+++|.+|||||||+|+|++..... ++..||||++.......+++ .+.++||||+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAI-----VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC-----CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcce-----eeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 4579999999999999999999764322 35789999876544333443 5789999999754
No 178
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.41 E-value=7.9e-08 Score=107.02 Aligned_cols=95 Identities=24% Similarity=0.154 Sum_probs=42.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChhhHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+.+|+++|.||||||||+|+|++..... ++..||||++.+.....+++ .+.++||||+..+......+. ...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-----vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~g--i~~ 305 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAI-----VSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEG--IRR 305 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-----------------------CEEEEETTEEEEEEC--------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-----cCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHH--HHH
Confidence 5679999999999999999999865333 35899999997654433433 689999999976432111000 011
Q ss_pred HHHhhhhcCceeEEecCCCcccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~l 499 (666)
.....+..+...|+++..+....
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~~s~ 328 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTERLD 328 (476)
T ss_dssp --CCCSSCSEEEEEEETTTCSSG
T ss_pred HHhhcccCCEEEEEEECCCCcch
Confidence 12234556777888887665443
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.40 E-value=3.5e-07 Score=93.28 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=52.3
Q ss_pred hhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005972 385 RNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 385 eeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
.+++..+........+|+++|.+|||||||+|+|++..... ++..+++|..........++ .+.|+||||+...
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-----VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSC-----CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcc-----cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 34444444332334689999999999999999999865432 35788888776554433433 6899999999765
Q ss_pred Cc
Q 005972 464 HL 465 (666)
Q Consensus 464 ~~ 465 (666)
..
T Consensus 98 ~~ 99 (262)
T 3def_A 98 GY 99 (262)
T ss_dssp TE
T ss_pred cc
Confidence 43
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.39 E-value=3.2e-07 Score=93.86 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=46.6
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~ 464 (666)
..+|+++|.+|||||||+|+|++..... ++..+|+|.+...+...... .+.|+||||+....
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVS-----ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSC-----CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccc-----ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 4589999999999999999999765432 35778888776554432322 68999999997654
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.39 E-value=9.4e-07 Score=88.33 Aligned_cols=166 Identities=12% Similarity=0.084 Sum_probs=79.7
Q ss_pred CceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecc-eecccccccccCchh------
Q 005972 202 GFTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYG-QVKNEVAENLIPDFD------ 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~sl-Ln~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~yg-kv~~~~~~~~iP~~d------ 273 (666)
-+..++||++|+|||+ +|++.+.+......... ..+..|...+.. ..+ .+ .-+..|++.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~--------~~t~~~~~~~~~-~~~~~i----~liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK--------SITKKCEKRSSS-WKETEL----VVVDTPGIFDTEVPN 95 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------CCSCEEEEEE-ETTEEE----EEEECCSCC-----C
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCC--------ceeeeEEEEEEE-eCCceE----EEEECCCccCCCCCH
Confidence 4667889999999665 49999887532211100 112222211110 000 00 001125432
Q ss_pred --HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCCh
Q 005972 274 --FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 274 --~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
+.+.+.+.+.. ....+|++|+|+|+.++.. . +...+..+..... .. ...|+++|+||+|++......
T Consensus 96 ~~~~~~~~~~~~~--~~~~~~~~l~v~d~~~~~~----~-~~~~l~~~~~~~~-~~---~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 96 AETSKEIIRCILL--TSPGPHALLLVVPLGRYTE----E-EHKATEKILKMFG-ER---ARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHHHHHH--TTTCCSEEEEEEETTCCSS----H-HHHHHHHHHHHHH-HH---HGGGEEEEEECGGGC------
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEEeeCCCCCH----H-HHHHHHHHHHHhh-hh---ccceEEEEEeCCccCCcccHH
Confidence 23334443333 4467899999999976432 1 1222233322111 00 124799999999998654322
Q ss_pred HHHH---HHHHHHHHhCCCCCcceEEEEecc-----cCcChhhHHHHHHhhc
Q 005972 352 TRLD---RWVRHRAKAGGAPKLNGVYLVSAR-----KDLGVRNLLAFIKELA 395 (666)
Q Consensus 352 ~~L~---~wl~~~~k~~g~~~~~~V~~VSAk-----kg~GveeLl~~I~~~l 395 (666)
..+. ..++.+.+..+. .++++++. +..++.+|+..|...+
T Consensus 165 ~~i~~~~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 165 DYLREAPEDIQDLMDIFGD----RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp ------CHHHHHHHHHHSS----SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHcCC----EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 1111 122333344453 25666654 3468888988887654
No 182
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.39 E-value=3.4e-07 Score=94.05 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=51.1
Q ss_pred cccC-EEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 289 ANAG-VVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aD-vVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++ +|++|+|+.+.... .. ...++..+.. ...|+++|+||+|+++.... ...+++.....+..
T Consensus 160 ~~~~~~il~v~d~~~~~~~--~~-~~~~~~~~~~---------~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~~~~ 224 (299)
T 2aka_B 160 TKENCLILAVSPANSDLAN--SD-ALKIAKEVDP---------QGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRR 224 (299)
T ss_dssp TSTTEEEEEEEESSSCGGG--CH-HHHHHHHHCT---------TCSSEEEEEECGGGSCTTCC---CHHHHTTCSSCCTT
T ss_pred cCCCeEEEEEecCCcchhh--hH-HHHHHHHhCC---------CCCeEEEEEEccccCCCCch---HHHHHhCCcCcCCC
Confidence 3445 55589999763211 11 1123333321 34689999999999865431 12222110001100
Q ss_pred CCcceEEEEecccCcChhhHHHHHHh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+..++.+||++|.|+++|++.|.+
T Consensus 225 -~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 225 -GYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp -CEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred -CcEEEECCChhhccccccHHHHHHH
Confidence 1235788999999999999998865
No 183
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.36 E-value=3.9e-07 Score=91.14 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=40.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCC--CceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIP--GTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~P--GTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+|||||||+|+|++..... +..| ++|++.......+. ..+.|+||||+.....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 93 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC------C-------CCSCEEEEEEETTEEEEEEECCSCC----
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC
Confidence 589999999999999999999865432 2344 67777655444344 3789999999986543
No 184
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.36 E-value=2.6e-07 Score=84.90 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=63.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-hHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-EQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~~~~ 477 (666)
+|+++|.+|||||||+|+|++..... .+..|++|.+........+ ..+.++||||...... +... ....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~ 73 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAV-----VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK----WEKKIQEKV 73 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC----------------CCEEEEEEETTEEEEEEECGGGCSSSS----CCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeee-----ccCCCCceecceEEEEEeCCceEEEEECCCCCCccc----hHHHHHHHH
Confidence 68999999999999999999765322 2467888877654433333 3678999999876542 1111 1122
Q ss_pred HHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 478 VEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
....+..+...|.++..+.+........+.++....++ +.+.|+.+..
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~---ilv~nK~Dl~ 121 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPV---ILVATKVDDP 121 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCE---EEEEECCCSG
T ss_pred HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCE---EEEEECcccc
Confidence 23456677778888776643332222233333333343 3445666653
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=1.5e-07 Score=102.42 Aligned_cols=91 Identities=22% Similarity=0.147 Sum_probs=43.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee---------------------EeC----CceEE
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG---------------------ILP----AKAKL 454 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~---------------------~l~----~~~~l 454 (666)
+|++||.||||||||+|+|++.. . .+++.|+||++...... .+. ..+.+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~-----~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~l 75 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-V-----EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKM 75 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-C-----cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEE
Confidence 68999999999999999999765 3 23689999987543210 011 25789
Q ss_pred EECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccc
Q 005972 455 YDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 455 iDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
+||||+.........+ ...++...+..+...++++.....+.
T Consensus 76 vDtpG~~~~a~~~~~l---~~~~l~~i~~aD~il~VvD~~~~~~~ 117 (397)
T 1wxq_A 76 VDVAGLVPGAHEGRGL---GNKFLDDLRMASALIHVVDATGKTDP 117 (397)
T ss_dssp EECC------------------CCCSSTTCSEEEEEEETTCCBCT
T ss_pred EECCCcccchhhhhhH---HHHHHHHHhcCCEEEEEEecccccCC
Confidence 9999997532211111 01111234667778888887665443
No 186
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.33 E-value=4.7e-07 Score=105.76 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=57.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC-
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA- 367 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~- 367 (666)
..+|+|++|+|+........ ...++..+.. ...|+|+|+||+|++++.... ..+++. +....
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d---~l~ll~~L~~---------~g~pvIlVlNKiDlv~~~~~~---~~il~~--~~~~l~ 248 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSD---ALKIAKEVDP---------QGQRTIGVITKLDLMDEGTDA---RDVLEN--KLLPLR 248 (772)
T ss_dssp STTEEEEEEEETTSCSSSCH---HHHHHHHHCT---------TCSSEEEEEECTTSSCTTCCS---HHHHTT--CSSCCS
T ss_pred cCCcEEEEEEcCCCCcchhH---HHHHHHHHHh---------cCCCEEEEEeCcccCCcchhh---HHHHHH--Hhhhhh
Confidence 57899999999987543221 1134444432 346899999999999765432 122110 01110
Q ss_pred CCcceEEEEecccCcChhhHHHHHHh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
..+..|+++||++|.|+++|++.|.+
T Consensus 249 lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 249 RGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCceEEecccccccchhHHHHHHH
Confidence 01456889999999999999999876
No 187
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.33 E-value=6.1e-07 Score=90.72 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=58.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCC-ceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChh-h
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG-TTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRD-E 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PG-TT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~-~ 474 (666)
..+|+++|.+|||||||+|+|++...... +..|+ +|++.......+. ..+.|+||||+.........+... .
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFES-----KLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCC-----CTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccc-----CCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 46899999999999999999998654332 34455 7777554333333 368999999998654321100000 0
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
..+....+..+...|+++...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC
T ss_pred HHHHhcCCCCcEEEEEEeCCC
Confidence 111123456777888888764
No 188
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.31 E-value=1.5e-06 Score=89.19 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~ 424 (666)
.+|+++|.+|||||||+|+|++....
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 47999999999999999999987643
No 189
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.31 E-value=5.9e-07 Score=92.17 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=37.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecc--cccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKL--TEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~--t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|++||.+|||||||+|+|++......... +....|+++.+........++ .+.|+||||+...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 4799999999999999999987664433210 001134445554443322222 6799999999643
No 190
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.31 E-value=2.6e-07 Score=105.22 Aligned_cols=73 Identities=27% Similarity=0.226 Sum_probs=46.6
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCc----eeEEEEEee----EeCCceEEEEC
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGT----TLGILRIGG----ILPAKAKLYDT 457 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGT----T~~~~~~~~----~l~~~~~liDT 457 (666)
+.++.|.....+...|+|+|.||||||||||+|++..... .++|| |+.+..... ..+..+.|+||
T Consensus 26 eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-------~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDT 98 (592)
T 1f5n_A 26 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-------SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDT 98 (592)
T ss_dssp HHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-------CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEE
T ss_pred HHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-------ccCCCCCCceeEEEEeecccccCCCceEEEecC
Confidence 3344554443334578899999999999999999875321 34444 444322210 11346899999
Q ss_pred CCCCCCCc
Q 005972 458 PGLLHPHL 465 (666)
Q Consensus 458 PGi~~~~~ 465 (666)
||+..+..
T Consensus 99 pGi~~~~~ 106 (592)
T 1f5n_A 99 EGLGDVEK 106 (592)
T ss_dssp CCBCCGGG
T ss_pred CCcCcccc
Confidence 99987654
No 191
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.31 E-value=4.5e-07 Score=98.64 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=47.0
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe------------------CCceEEEEC
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------------------PAKAKLYDT 457 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l------------------~~~~~liDT 457 (666)
..+.++++||.||||||||+|+|++... .+++.|+||++.......+ +..+.++||
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 3456899999999999999999997542 3468899997643322112 335899999
Q ss_pred CCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCC
Q 005972 458 PGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKAR 494 (666)
Q Consensus 458 PGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~ 494 (666)
||+.........+ ...++...+..+...++++..
T Consensus 94 pGl~~~as~~~gl---g~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 94 AGLVKGAHNGQGL---GNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp CC--------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred CCcccccchhhHH---HHHHHHHHHhcCeEEEEEecC
Confidence 9998654321111 123445567788888887753
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.30 E-value=3.5e-07 Score=98.47 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=54.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEE----EEee--------------EeCCceEEEECCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGIL----RIGG--------------ILPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~----~~~~--------------~l~~~~~liDTPGi 460 (666)
.+|++||.||||||||+|+|++.. . .+++.|+||++.. .++. ..+..+.++||||+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~-----~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-I-----EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL 76 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-C-----cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCC
Confidence 479999999999999999999754 2 2357889887743 2211 01246899999999
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecCCC
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~ 495 (666)
.........+ ...++...+..+...++++...
T Consensus 77 ~~~a~~~~gl---~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 77 VAGASKGEGL---GNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CTTHHHHGGG---TCCHHHHHHTCSEEEEEEECSC
T ss_pred cccccccchH---HHHHHHHHHhcCeEEEEEecCC
Confidence 8653211111 1223344567787888777543
No 193
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.30 E-value=5e-06 Score=100.51 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=60.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++|+|||+.+. ..++. .+ .+..+... +.+.+|+|+||+|+.........+..-++.+.+..+
T Consensus 379 gas~AD~aILVVDAtdG--v~~QT-rE-hL~ll~~l--------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 379 GAAQMDGAILVVAATDG--PMPQT-RE-HILLGRQV--------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp TSCCCSEEEEEEETTTC--SCTTH-HH-HHHHHHHH--------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhCCEEEEEEcCCcc--CcHHH-HH-HHHHHHHc--------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 56789999999999983 34432 22 22333321 233378999999998532111112222333445555
Q ss_pred CC-CcceEEEEecccC--------cChhhHHHHHHhhcCC
Q 005972 367 AP-KLNGVYLVSARKD--------LGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~-~~~~V~~VSAkkg--------~GveeLl~~I~~~l~~ 397 (666)
+. ....++++||++| .|+.+|++.|.++++.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 31 1134899999999 4789999999886653
No 194
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.30 E-value=1.7e-06 Score=88.49 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=57.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.+|+++|.+|||||||+|+|++.... ++.+||+|.+......... ..+.|+||||....... +.++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~e~v~ 75 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY------VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYS----SIDEKIA 75 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSS----SHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc------ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCC----CHHHHHH
Confidence 47899999999999999999975422 3578999988765443332 36899999998754432 1112111
Q ss_pred HHh--hhhcCceeEEecCCC
Q 005972 478 VEI--RKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~--~kel~~~~f~l~~~~ 495 (666)
... ....+...+.++..+
T Consensus 76 ~~~~~~~~~d~ii~V~D~t~ 95 (258)
T 3a1s_A 76 RDYLLKGDADLVILVADSVN 95 (258)
T ss_dssp HHHHHHSCCSEEEEEEETTS
T ss_pred HHHHhhcCCCEEEEEeCCCc
Confidence 111 145677777777654
No 195
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.29 E-value=1.5e-06 Score=93.76 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=60.8
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcE-EEEEE-CCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKL-VLVGT-KVDLLP 346 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpv-ILVlN-KiDLLp 346 (666)
|++ +|.+.+.. .+..+|++++|+| .+ |..++. +..+..+.. ...|. |+|+| |+|+ +
T Consensus 68 PGh~~f~~~~~~------~~~~aD~ailVvd-~~--g~~~qt--~e~~~~~~~---------~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 68 HSYPKTLKSLIT------ALNISDIAVLCIP-PQ--GLDAHT--GECIIALDL---------LGFKHGIIALTRSDST-H 126 (370)
T ss_dssp TTTTTCHHHHHH------HHHTCSEEEEEEC-TT--CCCHHH--HHHHHHHHH---------TTCCEEEEEECCGGGS-C
T ss_pred CChHHHHHHHHH------HHHHCCEEEEEEc-CC--CCcHHH--HHHHHHHHH---------cCCCeEEEEEEeccCC-C
Confidence 665 45444443 3467999999999 54 555432 222233332 12355 99999 9999 4
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcceEEE--Eeccc---CcChhhHHHHHHhhcC
Q 005972 347 SQVSPTRLDRWVRHRAKAGGAPKLNGVYL--VSARK---DLGVRNLLAFIKELAG 396 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~~~~~V~~--VSAkk---g~GveeLl~~I~~~l~ 396 (666)
... ...+..-++.+.+..+.. ...+++ +||++ +.|+++|++.|.++++
T Consensus 127 ~~~-~~~~~~~i~~~l~~~~~~-~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 127 MHA-IDELKAKLKVITSGTVLQ-DWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHH-HHHHHHHHHHHTTTSTTT-TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHhcCCC-ceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 221 011111122222222321 235899 99999 9999999999987654
No 196
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.29 E-value=8.5e-07 Score=103.08 Aligned_cols=97 Identities=8% Similarity=0.019 Sum_probs=56.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC----CChHH-------HH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ----VSPTR-------LD 355 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~----~~~~~-------L~ 355 (666)
.+..+|+||+|+|+.+... ......+...+.. ...|+++|+||+|++... ..... +.
T Consensus 197 ~i~~aD~vL~Vvda~~~~s---~~e~~~l~~~l~~---------~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~ 264 (695)
T 2j69_A 197 YVNNCHAILFVMRASQPCT---LGERRYLENYIKG---------RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLR 264 (695)
T ss_dssp HHHSSSEEEEEEETTSTTC---HHHHHHHHHHTTT---------SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEEeCCCccc---hhHHHHHHHHHHh---------hCCCEEEEEECcccccccccChhhHHHHHHHHHHHH
Confidence 4567999999999987421 1111222222221 235799999999997542 11111 11
Q ss_pred HHHHHHHHh-CC---C-CCcceEEEEecc--------------cCcChhhHHHHHHhhc
Q 005972 356 RWVRHRAKA-GG---A-PKLNGVYLVSAR--------------KDLGVRNLLAFIKELA 395 (666)
Q Consensus 356 ~wl~~~~k~-~g---~-~~~~~V~~VSAk--------------kg~GveeLl~~I~~~l 395 (666)
..+...... .+ + .....+++|||+ ++.|+++|.+.|.+.+
T Consensus 265 ~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 265 QVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 111111111 11 0 002359999999 9999999999987754
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.3e-07 Score=100.39 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=68.5
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCCceeecccccceecceeccccccccc---Cchh----HHH
Q 005972 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD----FDR 276 (666)
Q Consensus 205 ~a~vGrpNvg~s-lLn~l~~~K~si~~rk~~a~~a~~~~~~~~vCqRC~rLr~ygkv~~~~~~~~i---P~~d----~~~ 276 (666)
.++||+|||||| |+|+|.+.+..+ ... +-||+..+.|.+.....++.+ |++. ..+
T Consensus 75 V~ivG~PNvGKSTL~n~Lt~~~~~v-~~~----------------pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~ 137 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKLTGTESEA-AEY----------------EFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR 137 (376)
T ss_dssp EEEECCCCHHHHHHHHHHHSBCCCG-GGT----------------CSSCCCEEEEEEEETTEEEEEEECGGGCCC-----
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcc-cCC----------------CCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh
Confidence 467999999955 559999988332 222 345777777776655444443 4432 222
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCC
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDL 344 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDL 344 (666)
-+.+++.. .+.++|+|++|||+.+| ....+.+...|..... .+ ..+|.++++||+|.
T Consensus 138 ~~g~~~l~--~i~~ad~il~vvD~~~p-----~~~~~~i~~EL~~~~~--~l--~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 138 GRGKQVIA--VARTCNLLFIILDVNKP-----LHHKQIIEKELEGVGI--RL--NKTPPDILIKKKEK 194 (376)
T ss_dssp CHHHHHHH--HHHHCSEEEEEEETTSH-----HHHHHHHHHHHHHTTE--EE--TCCCCCEEEEECSS
T ss_pred HHHHHHHH--HHHhcCccccccccCcc-----HHHHHHHHHHHHHhhH--hh--ccCChhhhhhHhhh
Confidence 33344444 56789999999999873 3333444445544321 11 23567899999996
No 198
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.28 E-value=1.1e-07 Score=105.43 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=50.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+.+|.++|.+|||||||+|+|++..... ++..||||++.......++ ..+.++||||+.........+. ...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-----v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~g--i~~ 296 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAI-----VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIG--VER 296 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSC-----CSCCTTCCHHHHHHEEEETTEEEEECC--------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccc-----ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHH--HHH
Confidence 4679999999999999999999865332 3578999998643222232 2678999999965432111000 011
Q ss_pred HHHhhhhcCceeEEecCCCcc
Q 005972 477 MVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l 497 (666)
.....+..+...+.++.....
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~ 317 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGW 317 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCS
T ss_pred HhhhhhcCCEEEEEeccCCCC
Confidence 112234455666777665543
No 199
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.26 E-value=4.4e-07 Score=102.43 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC--hHHHHHHHHHHHHh
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS--PTRLDRWVRHRAKA 364 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~--~~~L~~wl~~~~k~ 364 (666)
....+|++++|+|+.+ +..++.. ..+..+.. .+.|+|+|+||+|+...... ...+..+- .....
T Consensus 72 ~~~~aD~vILVVDa~d--g~~~qt~--e~l~~~~~---------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~-~~~e~ 137 (537)
T 3izy_P 72 GTQVTDIVILVVAADD--GVMKQTV--ESIQHAKD---------AHVPIVLAINKCDKAEADPEKVKKELLAYD-VVCED 137 (537)
T ss_dssp SSBSBSSCEEECBSSS--CCCHHHH--HHHHHHHT---------TTCCEEECCBSGGGTTTSCCSSSSHHHHTT-SCCCC
T ss_pred HHccCCEEEEEEECCC--CccHHHH--HHHHHHHH---------cCCcEEEEEecccccccchHHHHHHHHhhh-hhHHh
Confidence 5677999999999998 5455432 22233332 34589999999999753221 11121110 00001
Q ss_pred CCCCCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
++ ....++++||++|.|+++|++.|..++
T Consensus 138 ~~--~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 138 YG--GDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp SS--SSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred cC--CCceEEEEECCCCCCchhHHHHHHHhh
Confidence 11 012588999999999999999987653
No 200
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=8.9e-07 Score=96.24 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=59.9
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC------------------CceEEEECC
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP------------------AKAKLYDTP 458 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~------------------~~~~liDTP 458 (666)
.+..+++||.+|||||||+|+|++.... .+++.|+||++.......++ ..+.++|||
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a-----~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG-----NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT-----STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-----cccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 4568999999999999999999985432 34689999987533222222 247999999
Q ss_pred CCCCCCcccccCChhhHHHHHhhhhcCceeEEecC
Q 005972 459 GLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKA 493 (666)
Q Consensus 459 Gi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~ 493 (666)
|+.........| ...+....+..+...+.++.
T Consensus 94 Gl~~~~s~~e~L---~~~fl~~ir~~d~il~Vvd~ 125 (392)
T 1ni3_A 94 GLTKGASTGVGL---GNAFLSHVRAVDAIYQVVRA 125 (392)
T ss_dssp GGCCCCCSSSSS---CHHHHHHHTTCSEEEEEEEC
T ss_pred ccccCCcHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 998654322222 12344555667777777764
No 201
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.25 E-value=5.1e-07 Score=99.07 Aligned_cols=121 Identities=19% Similarity=0.097 Sum_probs=69.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC--ceEEEECCCCCCCCcccccCChhhH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA--KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
..+|+++|.+|+|||||+|+|++..... ++..+|||.+.......+.. .+.++||||+......... ...
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~-----~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~---~~~ 105 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSI-----VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL---RVE 105 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC---CHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCc-----cCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH---HHH
Confidence 4589999999999999999999765432 25789999886555443443 6899999999865432211 122
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGK 531 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk 531 (666)
.........+...+.++. +..-....++..++....++ +.+.||++.....
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~pi---IvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPF---VVVVNKIDVLGEK 156 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCE---EEECCCCTTTTCC
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCE---EEEEeCcCCCCcc
Confidence 334455667778888876 22222233444444434443 3567888875443
No 202
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.24 E-value=6e-07 Score=98.35 Aligned_cols=91 Identities=23% Similarity=0.223 Sum_probs=55.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+++|+|+. ..+......+...+..+. ..+. .+|.++|+||+|+... . .+..+.+ ..+..+.
T Consensus 233 ~era~~lL~vvDls----~~~~~~ls~g~~el~~la--~aL~--~~P~ILVlNKlDl~~~-~---~~~~l~~-~l~~~g~ 299 (416)
T 1udx_A 233 IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYD--PALL--RRPSLVALNKVDLLEE-E---AVKALAD-ALAREGL 299 (416)
T ss_dssp HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHC--HHHH--HSCEEEEEECCTTSCH-H---HHHHHHH-HHHTTTS
T ss_pred HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHh--HHhh--cCCEEEEEECCChhhH-H---HHHHHHH-HHHhcCC
Confidence 35689999999996 112222222222232211 0011 2478999999999754 2 2333332 2234443
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.++++||+++.|+++|++.|.+.+
T Consensus 300 ----~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 ----AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp ----CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----eEEEEECCCccCHHHHHHHHHHHH
Confidence 399999999999999999998754
No 203
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.24 E-value=1.1e-06 Score=91.01 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.7
Q ss_pred ccEEEEeecCCChhhHHHhhhcccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~ 423 (666)
..|+|+|.+|||||||+|+|++...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4799999999999999999998765
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.24 E-value=1.7e-07 Score=100.23 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=49.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+..... . ..+...+ -..|.++|+||+|+.+.......+..+...+ +....
T Consensus 185 ~~~~d~vl~V~d~~~~~~--~----~~i~~~i-----------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l-~~~~~ 246 (349)
T 2www_A 185 ADMVDMFVLLLPPAGGDE--L----QGIKRGI-----------IEMADLVAVTKSDGDLIVPARRIQAEYVSAL-KLLRK 246 (349)
T ss_dssp HTTCSEEEEEECCC-----------------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHH-TTCC-
T ss_pred HhhCCEEEEEEcCCcchh--H----HHhHHHH-----------HhcCCEEEEeeecCCCchhHHHHHHHHHHHH-HhcCc
Confidence 357899999999876321 1 1111101 1136799999999974321000112221111 11110
Q ss_pred ---CCcceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 ---PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ---~~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.....++++||++|.|+++|++.|.+++
T Consensus 247 ~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 247 RSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0013589999999999999999998764
No 205
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.24 E-value=7.1e-07 Score=101.92 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=59.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCC-------------hHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-------------PTR 353 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-------------~~~ 353 (666)
.+..+|.+|+|+|+.+ |..++.. ..+..++. .+.|+++|+||+|+.+.... ...
T Consensus 90 ~~~~aD~aILVvDa~~--Gv~~qT~--e~l~~l~~---------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 90 GGALADLAILIVDINE--GFKPQTQ--EALNILRM---------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp SSBSCSEEEEEEETTT--CCCHHHH--HHHHHHHH---------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHhhCCEEEEEEECCC--CccHhHH--HHHHHHHH---------cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 5667999999999998 4444332 22333433 34689999999999853211 011
Q ss_pred ----H----HHHHHHHHHhCCCC-----------CcceEEEEecccCcChhhHHHHHHhhc
Q 005972 354 ----L----DRWVRHRAKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 354 ----L----~~wl~~~~k~~g~~-----------~~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+ ..+...+. +.++. ....++++||++|.|+++|++.|..++
T Consensus 157 v~~~~~e~i~ei~~~L~-e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLH-EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 1 11111221 22220 123589999999999999999887543
No 206
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.23 E-value=3.8e-06 Score=97.56 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.1
Q ss_pred eEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.|++.||.++.|++.|++.|.+++|..
T Consensus 255 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP 281 (693)
T 2xex_A 255 PVLCGTAFKNKGVQLMLDAVIDYLPSP 281 (693)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCCG
T ss_pred eEEEeecccCcCHHHHHHHHHHHCCCc
Confidence 378889999999999999999888765
No 207
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.23 E-value=1e-06 Score=102.34 Aligned_cols=130 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred hhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCc--------------eeEE--------
Q 005972 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGT--------------TLGI-------- 441 (666)
Q Consensus 384 veeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGT--------------T~~~-------- 441 (666)
+..|...+..+...+.+|+|+|.+|+|||||+|+|++.....+ +..|+| |++.
T Consensus 55 l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v-----~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~ 129 (695)
T 2j69_A 55 IEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPS-----DVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQ 129 (695)
T ss_dssp HHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCC-----CCCTTTCCCEEEEECSSCEEEEEESSSCCCCE
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----CCCCCccceEEEEeCCCCeEEEEEcCCCcccc
Confidence 3455555555555677999999999999999999998764433 456766 4432
Q ss_pred -------------------------------EEEeeEeC-----CceEEEECCCCCCCCcccccCChhhHHHHHhhhhcC
Q 005972 442 -------------------------------LRIGGILP-----AKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQ 485 (666)
Q Consensus 442 -------------------------------~~~~~~l~-----~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~ 485 (666)
..+...++ .++.|+||||+...... ........+..+
T Consensus 130 ~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~-------~~~~~~~i~~aD 202 (695)
T 2j69_A 130 LDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEAR-------NELSLGYVNNCH 202 (695)
T ss_dssp EEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTC-------HHHHTHHHHSSS
T ss_pred cChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhH-------HHHHHHHHHhCC
Confidence 00000011 36899999998753210 112223456788
Q ss_pred ceeEEecCCCcccccceEEE-eecccccceEEEEEecCCccccc
Q 005972 486 PRTYRVKARQAVHVGGLMRL-DLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 486 ~~~f~l~~~~~l~lggl~rl-d~l~~~~~~v~~~v~~s~~l~~h 528 (666)
...|+++..+.+....+..+ +.+.....++ +++.|+++..
T Consensus 203 ~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~i---iiVlNK~Dl~ 243 (695)
T 2j69_A 203 AILFVMRASQPCTLGERRYLENYIKGRGLTV---FFLVNAWDQV 243 (695)
T ss_dssp EEEEEEETTSTTCHHHHHHHHHHTTTSCCCE---EEEEECGGGG
T ss_pred EEEEEEeCCCccchhHHHHHHHHHHhhCCCE---EEEEECcccc
Confidence 89999998776555444322 2344333343 3455677653
No 208
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.21 E-value=6.7e-07 Score=95.34 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=51.4
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
...++|++|+|+..... . .....++..+.. ...|+++|+||+|++++... +..+++.....+..
T Consensus 166 ~~~~iiL~v~~a~~~~~--~-~~~~~i~~~~~~---------~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~l~~- 229 (353)
T 2x2e_A 166 KENCLILAVSPANSDLA--N-SDALKVAKEVDP---------QGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRR- 229 (353)
T ss_dssp STTEEEEEEEETTSCGG--G-CHHHHHHHHHCT---------TCTTEEEEEECGGGSCTTCC---CHHHHTTCSSCCTT-
T ss_pred CCCeEEEEEecCCCccc--h-hHHHHHHHHhCc---------CCCceEEEeccccccCcchh---HHHHHhCCcccccC-
Confidence 34668888888765211 1 111123333221 34689999999999865432 12222110000000
Q ss_pred CcceEEEEecccCcChhhHHHHHHh
Q 005972 369 KLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.+..++.+||+++.|+++|++.+.+
T Consensus 230 ~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 230 GYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CceEEEeCCcccccccccHHHHHHH
Confidence 1335788999999999999998865
No 209
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.20 E-value=1.8e-06 Score=88.34 Aligned_cols=87 Identities=21% Similarity=0.165 Sum_probs=57.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.+|+++|.+|||||||+|+|++... .+ +..||+|.+.......+. ..+.++||||+....... ..+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~-----~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~ 73 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HV-----GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIA 73 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EE-----EECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-cc-----CCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHH
Confidence 4799999999999999999997643 33 488999988765443333 357899999987543311 111111
Q ss_pred HHh--hhhcCceeEEecCCC
Q 005972 478 VEI--RKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~--~kel~~~~f~l~~~~ 495 (666)
... ....+...+.++..+
T Consensus 74 ~~~~~~~~~d~vi~v~D~~~ 93 (271)
T 3k53_A 74 RNFILDGNADVIVDIVDSTC 93 (271)
T ss_dssp HHHHHTTCCSEEEEEEEGGG
T ss_pred HHhhhccCCcEEEEEecCCc
Confidence 111 245666777777654
No 210
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.19 E-value=7.9e-07 Score=94.78 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~ 424 (666)
..|+|||.+|||||||+|+|++....
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 47999999999999999999987643
No 211
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.19 E-value=9.6e-07 Score=91.18 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=44.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++... .++++||+|.+........+..+.++||||....
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~------~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQ------RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC------CCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC------cccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence 4789999999999999999997542 2358899998754433111447899999998754
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.18 E-value=1.8e-06 Score=100.84 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=78.1
Q ss_pred EEEEecccCcChhhHHHHHHhhc------C-----CCccEEEEeecCCChhhHHHhhhccccceeec-ccc---------
Q 005972 373 VYLVSARKDLGVRNLLAFIKELA------G-----PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSK-LTE--------- 431 (666)
Q Consensus 373 V~~VSAkkg~GveeLl~~I~~~l------~-----~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~-~t~--------- 431 (666)
+...++..+.|+++|+..+.++. + .-..|+|||.+|+|||||+|+|++......+. +++
T Consensus 15 ~~~~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~ 94 (772)
T 3zvr_A 15 VPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLV 94 (772)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEE
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEee
Confidence 44567777888888877765431 1 12479999999999999999999865422110 000
Q ss_pred -----------------------------------cCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCccccc--C-C
Q 005972 432 -----------------------------------APIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMR--L-N 471 (666)
Q Consensus 432 -----------------------------------S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~--L-~ 471 (666)
....|++.+.+.+....+ .++.|+||||+......... + .
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~ 174 (772)
T 3zvr_A 95 NSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 174 (772)
T ss_dssp ECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHH
T ss_pred cCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHH
Confidence 011233334343332222 36899999999873211000 0 0
Q ss_pred hhhHHHHH-hhhhcCceeEEecCCCcccccce-EEEeecccccceEEEEEecCCccccc
Q 005972 472 RDEQKMVE-IRKELQPRTYRVKARQAVHVGGL-MRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 472 ~~~~~~~~-~~kel~~~~f~l~~~~~l~lggl-~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
.....+.. ...+.+...+++++...+...+. ..++.+.....+++ .+.||++..
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvI---lVlNKiDlv 230 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI---GVITKLDLM 230 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEE---EEEECTTSS
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEE---EEEeCcccC
Confidence 00111111 22455667888888776655554 34455554444543 345666653
No 213
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.16 E-value=6.8e-06 Score=91.11 Aligned_cols=92 Identities=18% Similarity=0.051 Sum_probs=50.5
Q ss_pred cccccCEEEEEEecCCCCC--C---CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHH---HHHH
Q 005972 287 GNANAGVVVMVVDCVDFDG--M---FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---DRWV 358 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~g--s---~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---~~wl 358 (666)
....+|++|+|+|+.+... + .++. .+.+ ..+... +.+++|+|+||+|+........++ ..-+
T Consensus 141 ~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l-~~~~~~--------~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~ 210 (467)
T 1r5b_A 141 GASQADIGVLVISARRGEFEAGFERGGQT-REHA-VLARTQ--------GINHLVVVINKMDEPSVQWSEERYKECVDKL 210 (467)
T ss_dssp -TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHH-HHHHHT--------TCSSEEEEEECTTSTTCSSCHHHHHHHHHHH
T ss_pred hcccCCEEEEEEeCCcCccccccCCCCcH-HHHH-HHHHHc--------CCCEEEEEEECccCCCccccHHHHHHHHHHH
Confidence 4577999999999988310 0 0111 1111 222211 223499999999997533222221 1122
Q ss_pred HHHHHhC-CCC--CcceEEEEecccCcChhhHH
Q 005972 359 RHRAKAG-GAP--KLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 359 ~~~~k~~-g~~--~~~~V~~VSAkkg~GveeLl 388 (666)
+.+.+.. |+. .-..++++||++|.|+.++.
T Consensus 211 ~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 211 SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 2333343 431 01248899999999998754
No 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.15 E-value=1.6e-06 Score=81.18 Aligned_cols=59 Identities=27% Similarity=0.283 Sum_probs=38.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++... .++..||+|++.......++ ..+.++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 4789999999999999999997532 12467888876433222222 36789999998754
No 215
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.14 E-value=2.9e-06 Score=80.31 Aligned_cols=59 Identities=27% Similarity=0.282 Sum_probs=43.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++... . ++..||+|.+.......++ ..+.++||||....
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~-~-----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENV-Y-----IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCE-E-----EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-c-----ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 4799999999999999999997542 2 2467898887654333232 36789999998754
No 216
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.14 E-value=1.6e-06 Score=81.89 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=43.6
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
+|+++|.+|||||||+|+|++... ..+..||+|++...+. +. .+.++||||+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV------RRGKRPGVTRKIIEIE--WK-NHKIIDMPGFGFM 57 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC------SSSSSTTCTTSCEEEE--ET-TEEEEECCCBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC------ccCCCCCccceeEEEe--cC-CEEEEECCCcccc
Confidence 689999999999999999997542 2356789888776654 33 7899999998643
No 217
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.13 E-value=4.5e-06 Score=89.77 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=47.3
Q ss_pred EEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
|+++|.+|||||||+|+|++... .++..|++|++.......++ ..+.++||||+..... .. +-+.......
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp-~~-lve~f~~tl~ 253 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP-PQ-IVDAFFVTLS 253 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------------CCSCEEEEEETTEEEEEEECCCBCSSCC-GG-GHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCc------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC-HH-HHHHHHHHHH
Confidence 88999999999999999997642 23478899987644333344 3578999999864211 10 1011112222
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
.....+...+.++...
T Consensus 254 ~~~~aD~il~VvD~s~ 269 (364)
T 2qtf_A 254 EAKYSDALILVIDSTF 269 (364)
T ss_dssp GGGGSSEEEEEEETTS
T ss_pred HHHhCCEEEEEEECCC
Confidence 3445566677776543
No 218
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.13 E-value=6.8e-07 Score=83.63 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=62.2
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCCcccccCChhhH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
...+|+++|.+|||||||+|+|++.... ....|++|.+.......++ ..+.++||||.........
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 73 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT------EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA------- 73 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS------CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc------cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------
Confidence 3468999999999999999999975432 2345665544322111122 3578999999754332211
Q ss_pred HHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
...+..+...+.++.........+..+..+.....++ +.+.|+.++.
T Consensus 74 ---~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~---ilv~nK~Dl~ 120 (178)
T 2lkc_A 74 ---RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI---IVAINKMDKP 120 (178)
T ss_dssp ---SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCE---EEEEETTTSS
T ss_pred ---HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCE---EEEEECccCC
Confidence 1123345566666654433222222223333333343 3455777764
No 219
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.12 E-value=1.2e-05 Score=93.24 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=24.1
Q ss_pred eEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.|++.||.++.|++.|++.|.+++|..
T Consensus 257 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP 283 (691)
T 1dar_A 257 PVFLGSALKNKGVQLLLDAVVDYLPSP 283 (691)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCT
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCCh
Confidence 488889999999999999999998865
No 220
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.10 E-value=3e-06 Score=91.33 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=57.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEE----EEee------------------EeCCceEEEE
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGIL----RIGG------------------ILPAKAKLYD 456 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~----~~~~------------------~l~~~~~liD 456 (666)
.++++||.||||||||+|+|++.. . .++++|+||++.. .++. ..+..+.++|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~-----~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-A-----LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-T-----TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-C-----cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 368999999999999999999753 2 2357788776522 1110 1234689999
Q ss_pred CCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCC
Q 005972 457 TPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 457 TPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~ 495 (666)
|||+.........+ ...++...+..+...++++...
T Consensus 76 tpGl~~~a~~~~~l---g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGL---GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCT---THHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchH---HHHHHHHHHhCCEEEEEEECCC
Confidence 99998654321112 2334445677788888877643
No 221
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.10 E-value=1.1e-05 Score=91.05 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=32.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
++..+|.+|+|+|+.+. ..+. ...++..+.. ...|+++|+||+|+...
T Consensus 102 ~l~~aD~~IlVvDa~~g--~~~~--t~~~~~~~~~---------~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 102 TLTAVDCCLMVIDAAKG--VEDR--TRKLMEVTRL---------RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp GGGGCSEEEEEEETTTC--SCHH--HHHHHHHHTT---------TTCCEEEEEECTTSCCS
T ss_pred HHHHCCEEEEEEeCCcc--chHH--HHHHHHHHHH---------cCCCEEEEEcCcCCccc
Confidence 45679999999999883 2222 2333333322 24589999999999754
No 222
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.08 E-value=3.6e-06 Score=83.23 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=40.5
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
..+|+++|.+|||||||+|+|++.... ++..+++|++......... ..+.|+||||....
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE------EECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc------cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 468999999999999999999976432 2467888887654332222 36789999999653
No 223
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.08 E-value=2.2e-06 Score=82.89 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+..++++|.+|||||||+|+|++.... ..+++.+|+|+....+. ++.+..++||||+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~----~~~~~~~G~~~~~~~~~--~~~~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSL----ARTSKTPGRTQLINLFE--VADGKRLVDLPGYGYA 85 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEEEEE--EETTEEEEECCCCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc----ccccCCCccceeeEEEE--ecCCEEEEECcCCccc
Confidence 4567999999999999999999975411 12356789887643332 3347889999998643
No 224
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.05 E-value=3.3e-06 Score=95.64 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=71.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee-------------------------------
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG------------------------------- 446 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~------------------------------- 446 (666)
...|+|+|.+|||||||||+|++..... ..++..|+||+-..-...
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~---~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPG---SRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSS---CCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccc---CccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3589999999999999999999875421 013466776653211100
Q ss_pred -----EeC----CceEEEECCCCCCCCcc--cccCChhhHHHHHhhhhcCceeEEecCCC-cccccceEEEeecccccce
Q 005972 447 -----ILP----AKAKLYDTPGLLHPHLM--SMRLNRDEQKMVEIRKELQPRTYRVKARQ-AVHVGGLMRLDLDQASVET 514 (666)
Q Consensus 447 -----~l~----~~~~liDTPGi~~~~~~--~~~L~~~~~~~~~~~kel~~~~f~l~~~~-~l~lggl~rld~l~~~~~~ 514 (666)
.++ .++.|+||||+..+... ...+.- ...........+...|.+++.+ .+.-.....++.+.....+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f-~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p 220 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDF-PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK 220 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCH-HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhH-HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC
Confidence 011 25899999999864321 111100 1122234567888999999865 3333344455555544445
Q ss_pred EEEEEecCCccccc
Q 005972 515 IYVTVWASPNVSLH 528 (666)
Q Consensus 515 v~~~v~~s~~l~~h 528 (666)
+ +++.||++..
T Consensus 221 v---ilVlNK~Dl~ 231 (550)
T 2qpt_A 221 I---RVVLNKADMV 231 (550)
T ss_dssp E---EEEEECGGGS
T ss_pred E---EEEEECCCcc
Confidence 4 3456777753
No 225
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.03 E-value=3.9e-06 Score=89.56 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=51.8
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+...+.. . .+... . ...|+++|+||+|+.+.... ......++.....++..
T Consensus 191 ~~aD~vl~V~d~~~~~~~--~--------~l~~~-----~--~~~p~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~ 252 (355)
T 3p32_A 191 NMVDTFVLLTLARTGDQL--Q--------GIKKG-----V--LELADIVVVNKADGEHHKEA-RLAARELSAAIRLIYPR 252 (355)
T ss_dssp TTCSEEEEEEESSTTCTT--T--------TCCTT-----S--GGGCSEEEEECCCGGGHHHH-HHHHHHHHHHHHHHSTT
T ss_pred HhCCEEEEEECCCCCccH--H--------HHHHh-----H--hhcCCEEEEECCCCcChhHH-HHHHHHHHHHHhhcccc
Confidence 579999999997653211 1 11100 0 11378999999999753221 11111111111111100
Q ss_pred --C-cceEEEEecccCcChhhHHHHHHhhcC
Q 005972 369 --K-LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 369 --~-~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
. ...|+++||++|.|+++|++.|.++++
T Consensus 253 ~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 253 EALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0 124999999999999999999987643
No 226
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.02 E-value=1.4e-05 Score=76.94 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g~ 367 (666)
..++.+++|+|+.+... + ..+ ..++..+... .....|+++|+||+||.... ........+ ....++
T Consensus 76 ~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~~~~~ 142 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLT-Y-ENV-ERWLKELRDH------ADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNL 142 (199)
T ss_dssp TTCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTC
T ss_pred hcCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------cCCCCeEEEEEECcccccccCcCHHHHHHH----HHHcCC
Confidence 46789999999887321 1 111 1122222221 11346899999999997532 222223333 344443
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||+++.|++++++.|.+.
T Consensus 143 ----~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 143 ----SFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 26779999999999999998764
No 227
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.00 E-value=1.4e-05 Score=74.40 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=51.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+. ++. .+.++||||..... .
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~----------~ 79 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIE--VSGQKIKLQIWDTAGQERFR----------A 79 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSS----CTTSCCCCEEEEEEE--ETTEEEEEEEEECTTGGGTC----------H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceEEEEEEEE--ECCeEEEEEEEECCCChHhh----------h
Confidence 5799999999999999999997653211 112334443333322 222 57899999953211 1
Q ss_pred HHHHhhhhcCceeEEecCCCcc
Q 005972 476 KMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l 497 (666)
......+..+...|.++.....
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~ 101 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRS 101 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHH
T ss_pred hHHHHhccCCEEEEEEeCcCHH
Confidence 1223456677788888876543
No 228
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.98 E-value=7.8e-06 Score=76.20 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=39.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++..... ...|++|.+.......++. .+.++||||...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSG------SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 579999999999999999999754321 3456666554433322333 478999999543
No 229
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.98 E-value=3e-06 Score=90.45 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=56.9
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
+|++||.+|||||||||+|+.... .++..|+||++.......++ ..+.|+||||+.........| ...+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~------~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l---~~~f 230 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP------KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGL---GHQF 230 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC------EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTT---HHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC------ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchh---HHHH
Confidence 689999999999999999986532 23578888877543222233 468999999986422111111 1233
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
+.-....+...++++...
T Consensus 231 l~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp HHHHHHCCEEEEEEESSC
T ss_pred HHHHHhccEEEEEEECCc
Confidence 334455777888888643
No 230
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.96 E-value=9.6e-06 Score=76.29 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=38.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...++||.+.......++. .+.++||||...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFV-------DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-------CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 57999999999999999999965422 2455666554443333333 356899999553
No 231
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.96 E-value=4.4e-06 Score=77.12 Aligned_cols=57 Identities=26% Similarity=0.247 Sum_probs=32.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++..... .++.+|+|...... +.. .+.++||||....
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~~ 62 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGP-----EAEAAGHTYDRSIV---VDGEEASLMVYDIWEQDGG 62 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC---------------CEEEEEEE---ETTEEEEEEEEECC-----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccC-----CCCccccceEEEEE---ECCEEEEEEEEECCCCccc
Confidence 479999999999999999998654332 24678888753221 222 4679999997643
No 232
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.95 E-value=1.7e-05 Score=76.03 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=49.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ..|.++.+.......++. .+.++||||..... .
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~ 90 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEA------CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN----------S 90 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH----------H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcC------CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH----------H
Confidence 5799999999999999999997543221 223333332222222333 57899999953211 1
Q ss_pred HHHHhhhhcCceeEEecCCCcccc
Q 005972 476 KMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
......+..+...++++..+...+
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~ 114 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETF 114 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHH
Confidence 122345667788888887654433
No 233
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.95 E-value=1.8e-05 Score=74.31 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=38.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|+..... +..++|+.........++. .+.++||||....
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFV-------DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-------CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhh
Confidence 57999999999999999999965422 2333444332222222333 4579999997654
No 234
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.94 E-value=8.7e-06 Score=75.61 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=36.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... +..+|+|.....+. ++. .+.++||||...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDL-----HEQLGEDVYERTLT--VDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC----------CCCSSSSEEEEEEE--ETTEEEEEEEECCC----
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccc-----cCccccceeEEEEE--ECCEEEEEEEEecCCCCc
Confidence 4799999999999999999997653322 35577775443332 333 467999999754
No 235
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.93 E-value=1.1e-05 Score=75.12 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||.......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------- 79 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDN------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------- 79 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH---------
Confidence 579999999999999999999654221 2345555554433323343 5789999995432211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 80 -~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 80 -IPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp -SHHHHHTCSEEEEEEETTC
T ss_pred -HHHHhcCCCEEEEEEECCC
Confidence 1123455677777777654
No 236
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.93 E-value=9.5e-06 Score=90.82 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=54.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHH---HHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH---RAK 363 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~---~~k 363 (666)
....+|++++|+|+.+ |..++... .+..+.. ...|+|+|+||+|+...... ++...+.. +.+
T Consensus 71 ~~~~aD~aILVVda~~--g~~~qT~e--~l~~~~~---------~~vPiIVviNKiDl~~~~~~--~v~~~l~~~~~~~~ 135 (501)
T 1zo1_I 71 GAQATDIVVLVVAADD--GVMPQTIE--AIQHAKA---------AQVPVVVAVNKIDKPEADPD--RVKNELSQYGILPE 135 (501)
T ss_dssp SSBSCSSEEEEEETTT--BSCTTTHH--HHHHHHH---------TTCCEEEEEECSSSSTTCCC--CTTCCCCCCCCCTT
T ss_pred HHhhCCEEEEEeeccc--CccHHHHH--HHHHHHh---------cCceEEEEEEeccccccCHH--HHHHHHHHhhhhHH
Confidence 5678999999999988 44443321 1222222 24579999999999753210 01110000 000
Q ss_pred hCCCCCcceEEEEecccCcChhhHHHHHHh
Q 005972 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.++ ....++++||++|.|+++|++.|..
T Consensus 136 ~~~--~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 136 EWG--GESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCS--SSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HhC--CCccEEEEeeeeccCcchhhhhhhh
Confidence 111 0135899999999999999999864
No 237
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.92 E-value=1.4e-05 Score=73.24 Aligned_cols=80 Identities=19% Similarity=0.038 Sum_probs=47.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ..+.|+.+.......++. .+.++||||......
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---------- 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-------KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---------- 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-------CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH----------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-------cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH----------
Confidence 479999999999999999999654221 223333332222222332 378999999543211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++...
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~ 86 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVN 86 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTC
T ss_pred HHHHHhccCCEEEEEEeCCC
Confidence 11223455566677766554
No 238
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.92 E-value=1.3e-05 Score=73.33 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=47.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.........++. .+.++||||......
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---------- 67 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA---------- 67 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH----------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccC-------CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH----------
Confidence 57999999999999999999975422 1334444443332222333 578999999543211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~ 87 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITE 87 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTC
T ss_pred HHHHHhhcCCEEEEEEECCC
Confidence 11233455666677776554
No 239
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.92 E-value=4.3e-06 Score=84.05 Aligned_cols=98 Identities=18% Similarity=0.070 Sum_probs=55.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHH-------
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR------- 359 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~------- 359 (666)
...+ ++|++|+|+.... .+......+...+.... . ...|+++|+||+|+.+... ...+..|++
T Consensus 135 ~~~~-~~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~p~~iv~NK~D~~~~~~-~~~~~~~l~~~~~~~~ 204 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILK--KPNDYCFVRFFALLIDL-----R-LGATTIPALNKVDLLSEEE-KERHRKYFEDIDYLTA 204 (262)
T ss_dssp TSSS-CEEEEEECGGGCC--SHHHHHHHHHHHHHHHH-----H-HTSCEEEEECCGGGCCHHH-HHHHHHHHHCHHHHHH
T ss_pred HHhh-ceEEeccchhhhc--CHHHHHHHHHHHHHHhc-----c-cCCCeEEEEeccccccccc-HHHHHHHHhChHHHHH
Confidence 3466 9999999987633 22221111100111100 0 2357999999999975421 111233321
Q ss_pred HH-----------------HHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 360 HR-----------------AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 360 ~~-----------------~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.+ .+.++. ...++++||+++.|+++|++.|.+.++
T Consensus 205 ~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 205 RLKLDPSMQGLMAYKMCSMMTEVLP--PVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHSC--CCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhccccccchhHhHHHHHHHHhcC--cccceEEEecCcccHHHHHHHHHHHhc
Confidence 11 122221 124899999999999999999987643
No 240
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.91 E-value=1.2e-05 Score=74.85 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=36.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDT------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----------CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 478999999999999999998654221 1234444433222222343 57899999943
No 241
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.91 E-value=1.3e-05 Score=74.88 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=49.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ...|.++.+.......++. .+.++||||.......
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------- 76 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-----TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--------- 76 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC-----CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH---------
Confidence 5799999999999999999987653211 2345555554332222333 5789999995432211
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++....
T Consensus 77 -~~~~~~~~d~ii~v~d~~~~ 96 (180)
T 2g6b_A 77 -THAYYRDAHALLLLYDVTNK 96 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCH
T ss_pred -HHHHccCCCEEEEEEECCCH
Confidence 11223556667777766543
No 242
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.8e-05 Score=75.21 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++..... ...+..|++|.+. ....+.++||||........ ...+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~------~~~~ 112 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAADY------DGSGVTLVDFPGHVKLRYKL------SDYL 112 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC---------------CC------CCTTCSEEEETTCCBSSCCH------HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceeeee------cCCeEEEEECCCCchHHHHH------HHHH
Confidence 4589999999999999999999764221 1113445555432 23468899999986543211 1112
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
.......+...|+++..
T Consensus 113 ~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDST 129 (193)
T ss_dssp HHHGGGEEEEEEEEETT
T ss_pred HhhcccCCEEEEEEECC
Confidence 22223456677777765
No 243
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.89 E-value=7.8e-06 Score=77.74 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=52.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
...+|+++|.+|||||||+|+|++...... ++.+|++...+.+. +..+.++||||..... ..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~~---~~~l~i~Dt~G~~~~~----------~~ 76 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQSQ---GFKLNVWDIGGQRKIR----------PY 76 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEET---TEEEEEEECSSCGGGH----------HH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEEC---CEEEEEEECCCCHHHH----------HH
Confidence 346899999999999999999997643222 34566655444332 2367899999964211 11
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...|.++...
T Consensus 77 ~~~~~~~~~~~i~v~d~~~ 95 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSAD 95 (181)
T ss_dssp HHHHHTTCSEEEEEEETTC
T ss_pred HHHHhCCCCEEEEEEECcC
Confidence 1233456677777776544
No 244
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.89 E-value=1.3e-05 Score=73.96 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=52.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...+.+|+|.....+. +. ..+.++||||......
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~---------- 70 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDP----NINPTIGASFMTKTVQ--YQNELHKFLIWDTAGLERFRA---------- 70 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT----TCCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGGGGG----------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC----CCCCceeEEEEEEEEE--ECCeEEEEEEEcCCCchhhhc----------
Confidence 479999999999999999999764221 1235566665544433 22 2578999999743211
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...+.++....
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~ 91 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKE 91 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCH
T ss_pred ccHhhCcCCCEEEEEEECcCH
Confidence 112234556667777766543
No 245
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.89 E-value=1.7e-05 Score=76.40 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=50.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||.........
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 75 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTN------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS------- 75 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCT------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH-------
Confidence 579999999999999999998754221 2334444333222222333 578999999654332211
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
...+..+...|.++....
T Consensus 76 ---~~~~~~d~vilv~d~~~~ 93 (206)
T 2bcg_Y 76 ---SYYRGSHGIIIVYDVTDQ 93 (206)
T ss_dssp ---GGGTTCSEEEEEEETTCH
T ss_pred ---HhccCCCEEEEEEECcCH
Confidence 123455667777776543
No 246
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.89 E-value=1.7e-05 Score=73.90 Aligned_cols=80 Identities=16% Similarity=0.061 Sum_probs=49.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++.... +..++||.........++. .+.++||||.......
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------- 73 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFV-------SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM--------- 73 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-------cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH---------
Confidence 58999999999999999999975321 2455565554332222332 5688999996543221
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 74 -~~~~~~~~d~~i~v~d~~~ 92 (181)
T 2fn4_A 74 -REQYMRAGHGFLLVFAIND 92 (181)
T ss_dssp -HHHHHHHCSEEEEEEETTC
T ss_pred -HHHHHhhCCEEEEEEeCCC
Confidence 1123344566666666544
No 247
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.88 E-value=4.7e-05 Score=88.02 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.9
Q ss_pred eEEEEecccCcChhhHHHHHHhhcCC
Q 005972 372 GVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 372 ~V~~VSAkkg~GveeLl~~I~~~l~~ 397 (666)
.++++||++|.|++.|++.|.+++|.
T Consensus 249 pv~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 249 PVALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCC
Confidence 48889999999999999999888764
No 248
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.87 E-value=9.8e-06 Score=74.72 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=46.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......+++ .+.++||||.......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------- 68 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNP------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--------- 68 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC---------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh---------
Confidence 479999999999999999999654321 2344444443222222332 4688999996432221
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++..+.
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1g16_A 69 -TTAYYRGAMGIILVYDITDE 88 (170)
T ss_dssp -CHHHHTTEEEEEEEEETTCH
T ss_pred -HHHHhccCCEEEEEEECCCH
Confidence 11234556666777776543
No 249
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.87 E-value=9e-06 Score=89.44 Aligned_cols=91 Identities=22% Similarity=0.156 Sum_probs=60.9
Q ss_pred CccEEEEeecCCChhhHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-Cc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~-------------------------~~~t~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
..+++++|.+|+|||||+|+|+...+... ........+|+|.+........+ ..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 36899999999999999999976533211 11112234789998755443232 36
Q ss_pred eEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccc
Q 005972 452 AKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVH 498 (666)
Q Consensus 452 ~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~ 498 (666)
+.|+||||.... ...+.......+...+.++.....+
T Consensus 97 ~~iiDTPGh~~f----------~~~~~~~~~~aD~~ilVVDa~~g~~ 133 (439)
T 3j2k_7 97 FTILDAPGHKSF----------VPNMIGGASQADLAVLVISARKGEF 133 (439)
T ss_pred EEEEECCChHHH----------HHHHHhhHhhCCEEEEEEECCCCcc
Confidence 899999995421 1234445667888899998877654
No 250
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.87 E-value=1.6e-05 Score=75.51 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=52.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...|++|.+.......++. .+.++||||......
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTE------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS------CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT----------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC------CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh----------
Confidence 579999999999999999999754321 2456656554433322333 478999999532211
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...++++..+.
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~ 101 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQ 101 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCH
T ss_pred hHHHHHhhCCEEEEEEECcCH
Confidence 112344566777777776553
No 251
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.87 E-value=2.3e-05 Score=74.37 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=55.1
Q ss_pred hhHHHHHHhhc-CCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 385 RNLLAFIKELA-GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 385 eeLl~~I~~~l-~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
..+++.+.-.. ....+|+++|.+|||||||+|+|+....... .+..|.+...+.+. ...+.++||||....
T Consensus 8 ~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~---~~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 8 ASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-----VPTVGVNLETLQYK---NISFEVWDLGGQTGV 79 (189)
T ss_dssp SCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-----CSSTTCCEEEEEET---TEEEEEEEECCSSSS
T ss_pred HHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCc-----CCCCceEEEEEEEC---CEEEEEEECCCCHhH
Confidence 33555444333 3567899999999999999999986543221 23334443333322 236789999997643
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCC
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~ 495 (666)
..... ...+..+...+.++..+
T Consensus 80 ~~~~~----------~~~~~~d~ii~v~d~~~ 101 (189)
T 2x77_A 80 RPYWR----------CYFSDTDAVIYVVDSTD 101 (189)
T ss_dssp CCCCS----------SSSTTCCEEEEEEETTC
T ss_pred HHHHH----------HHhhcCCEEEEEEeCCC
Confidence 32211 12245566666666543
No 252
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.87 E-value=8.7e-06 Score=85.11 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=57.5
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC--ceEEEECCCCCCCCcccccCChhhH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA--KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
+.+|+++|.+|||||||+|+|++..... ++..+|+|++.......+.+ .+.++||||.... ....+ ..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-----~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~---~~ 72 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-----DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF--MENYF---TK 72 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-----GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH--HHHHH---TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-----cccCcCCccceEEEEEEeCCceEEEEEECCCcHHH--hhhhh---hh
Confidence 4589999999999999999998753222 24678999887554433322 5789999996422 00000 01
Q ss_pred HHHHhhhhcCceeEEecCCCcc
Q 005972 476 KMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l 497 (666)
......+..+...++++..+.-
T Consensus 73 ~~~~~~~~ad~vi~V~D~t~~~ 94 (307)
T 3r7w_A 73 QKDHIFQMVQVLIHVFDVESTE 94 (307)
T ss_dssp THHHHHTTCSEEEEEEETTCSC
T ss_pred HHHHHhccCCEEEEEEECCChh
Confidence 1123345677788888776543
No 253
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.86 E-value=4.5e-05 Score=72.33 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=50.6
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
...+|+++|.+|||||||+|+|++...... .+..|.+...+.+. +..+.++||||.......
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~---------- 76 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-----SPTIGSNVEEIVIN---NTRFLMWDIGGQESLRSS---------- 76 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-----ECCSCSSCEEEEET---TEEEEEEECCC----CGG----------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcC-----cCCCccceEEEEEC---CEEEEEEECCCCHhHHHH----------
Confidence 457899999999999999999996554322 23445444433332 236789999998543221
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 77 ~~~~~~~~d~ii~v~d~~~ 95 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTD 95 (187)
T ss_dssp GHHHHTTCCEEEEEEETTC
T ss_pred HHHHhcCCCEEEEEEeCCC
Confidence 1123456777777777654
No 254
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.85 E-value=1.8e-05 Score=75.67 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=38.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.+.......++. .+.++||||..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 57999999999999999999975421 2345555444333323443 57899999954
No 255
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.85 E-value=1.5e-05 Score=73.28 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=50.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...+..|++.....+. ++. .+.++||||......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~~~~---------- 67 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE----NKEPTIGAAFLTQRVT--INEHTVKFEIWDTAGQERFAS---------- 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT----TCCCCSSEEEEEEEEE--ETTEEEEEEEEEECCSGGGGG----------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEEEE--ECCEEEEEEEEECCCChhhhh----------
Confidence 479999999999999999999654221 1123444444333332 332 578999999532111
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...+.++..+.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCH
T ss_pred hhhhhhccCcEEEEEEecCCh
Confidence 122344566777777776543
No 256
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.85 E-value=2.4e-05 Score=73.98 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=52.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++..... ..+.+|++...+.+. +..+.++||||........
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~---------- 82 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNVEEIVIN---NTRFLMWDIGGQESLRSSW---------- 82 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEE-----EECCSSSSCEEEEET---TEEEEEEEESSSGGGTCGG----------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCc-----cCCcCceeeEEEEEC---CEEEEEEECCCCHhHHHHH----------
Confidence 4689999999999999999999765422 235566655443332 2367899999985322211
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...|+++....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~ 101 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDR 101 (181)
T ss_dssp GGGGTTCCEEEEEEETTCT
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1234556777777776543
No 257
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.85 E-value=3.5e-05 Score=74.96 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=39.3
Q ss_pred cccCEEEEEEecC-CCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHH---HHHHHHHHHHh
Q 005972 289 ANAGVVVMVVDCV-DFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR---LDRWVRHRAKA 364 (666)
Q Consensus 289 ~~aDvVV~VVDa~-Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~---L~~wl~~~~k~ 364 (666)
..+|.+++|+|+. +.. ++ ......+...+.... .......|+++|+||+|+......... +..-++.+...
T Consensus 81 ~~~~~~i~v~D~~~~~~-~~-~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPK-KL-TTTAEFLVDILSITE---SSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp GGEEEEEEEEETTSCTT-CC-HHHHHHHHHHHHHHH---HHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChH-HH-HHHHHHHHHHHhccc---ccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3478999999998 432 22 233344433332210 001135689999999999876541111 11111222222
Q ss_pred CCCCCcceEEEEecccCcC
Q 005972 365 GGAPKLNGVYLVSARKDLG 383 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~G 383 (666)
.+ ..++.+||++|.+
T Consensus 156 ~~----~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RK----KSLNEVERKINEE 170 (218)
T ss_dssp HH----HHHHC--------
T ss_pred Hh----ccccccccccccc
Confidence 22 1367789988765
No 258
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.84 E-value=2.1e-05 Score=73.68 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=50.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.........++. .+.|+||||......
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 81 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA---------- 81 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH----------
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-------CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHH----------
Confidence 58999999999999999999975421 2344555443333223333 578999999643221
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~ 101 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITE 101 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTC
T ss_pred HHHHHhccCCEEEEEEECcC
Confidence 11233455666667666553
No 259
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.84 E-value=1.9e-05 Score=74.36 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=48.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..... .
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~ 74 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKD------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR----------S 74 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCT------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH----------H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH----------H
Confidence 579999999999999999998754321 2334444443322222333 57899999953211 1
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++..+
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~ 94 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITS 94 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTC
T ss_pred HHHHHHhcCCEEEEEEECcC
Confidence 11223345566666666554
No 260
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.83 E-value=1.4e-05 Score=73.44 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||.......
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 70 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTK------DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--------- 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC------CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC---------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC------CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH---------
Confidence 579999999999999999999754221 1223222232222212232 5789999995432221
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++..+.
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~ 90 (168)
T 1z2a_A 71 -TKAYYRGAQACVLVFSTTDR 90 (168)
T ss_dssp -CHHHHTTCCEEEEEEETTCH
T ss_pred -HHHHhcCCCEEEEEEECcCH
Confidence 11234556667777776543
No 261
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.83 E-value=4.2e-06 Score=94.32 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=76.8
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--e--------------cccccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--S--------------KLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~--------------~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
.+|+|+|.+|+|||||+|+|+...+... + .......+|+|.........+. ..+.|+||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 5899999999999999999974332210 0 0000113565544322222222 367999999975
Q ss_pred CCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHh
Q 005972 462 HPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKN 541 (666)
Q Consensus 462 ~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k 541 (666)
.... ......+..+...+.++.........+..+..+.....++ +.+.||++.........-+-+++
T Consensus 94 df~~----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi---ivviNK~Dl~~~~~~~~l~ei~~ 160 (528)
T 3tr5_A 94 DFTE----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI---MTFINKMDRDTRPSIELLDEIES 160 (528)
T ss_dssp TCCH----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE---EEEEECTTSCCSCHHHHHHHHHH
T ss_pred hHHH----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE---EEEEeCCCCccccHHHHHHHHHH
Confidence 4322 1334566788889999987766555444444444444453 34567887654333333333455
Q ss_pred hcCC
Q 005972 542 HVGI 545 (666)
Q Consensus 542 ~~g~ 545 (666)
.+|.
T Consensus 161 ~l~~ 164 (528)
T 3tr5_A 161 ILRI 164 (528)
T ss_dssp HHCC
T ss_pred hhCC
Confidence 5554
No 262
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.83 E-value=1.4e-05 Score=84.78 Aligned_cols=86 Identities=13% Similarity=-0.058 Sum_probs=49.3
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHH---HhC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA---KAG 365 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~---k~~ 365 (666)
..+|++++|+|+........ +..... ..|.++|+||+|+..... +..+++.+. ..+
T Consensus 168 ~~aD~vl~Vvd~~~~~~~~~------l~~~~~-----------~~p~ivv~NK~Dl~~~~~----~~~~~~~l~~~l~~~ 226 (341)
T 2p67_A 168 RMVDCFISLQIAGGGDDLQG------IKKGLM-----------EVADLIVINKDDGDNHTN----VAIARHMYESALHIL 226 (341)
T ss_dssp TTCSEEEEEECC------CC------CCHHHH-----------HHCSEEEECCCCTTCHHH----HHHHHHHHHHHHHHS
T ss_pred HhCCEEEEEEeCCccHHHHH------HHHhhh-----------cccCEEEEECCCCCChHH----HHHHHHHHHHHHHhc
Confidence 56999999999865321000 000000 126799999999975321 222222221 122
Q ss_pred CC--CC-cceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GA--PK-LNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~--~~-~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
+. .. ...++++||++|.|+++|++.|.+.+
T Consensus 227 ~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 227 RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 21 00 23588999999999999999998753
No 263
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.82 E-value=2.3e-05 Score=73.59 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=48.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
...+|+++|.+|||||||+|+|++..... ..+..|.+...+.+. +..+.++||||........
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~--------- 79 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVT-----TKPTIGFNVETLSYK---NLKLNVWDLGGQTSIRPYW--------- 79 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE-----ECSSTTCCEEEEEET---TEEEEEEEEC----CCTTG---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCc-----cCCcCccceEEEEEC---CEEEEEEECCCCHhHHHHH---------
Confidence 45789999999999999999999654321 234455554433332 2367899999986533211
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 80 -~~~~~~~d~ii~v~d~~~ 97 (183)
T 1moz_A 80 -RCYYADTAAVIFVVDSTD 97 (183)
T ss_dssp -GGTTTTEEEEEEEEETTC
T ss_pred -HHHhccCCEEEEEEECCC
Confidence 112344566666666543
No 264
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.82 E-value=2.3e-05 Score=72.03 Aligned_cols=80 Identities=20% Similarity=0.056 Sum_probs=47.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++.... ...+.|+.........++. .+.++||||.......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------- 67 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-------EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM--------- 67 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-------CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH---------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-------CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHH---------
Confidence 47999999999999999999975322 1223333333222222332 4689999996533221
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 68 -~~~~~~~~d~~i~v~d~~~ 86 (167)
T 1c1y_A 68 -RDLYMKNGQGFALVYSITA 86 (167)
T ss_dssp -HHHHHHHCSEEEEEEETTC
T ss_pred -HHHHhccCCEEEEEEECCC
Confidence 1123445666666666544
No 265
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.82 E-value=2e-05 Score=72.72 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=36.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFND------KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCS------SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCc------CCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999999654221 1334444333222222332 46788999954
No 266
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.82 E-value=1.5e-05 Score=76.78 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=51.6
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++.... ....|.++.+.......+++ .+.|+||||.......
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------- 85 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFN------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-------- 85 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCC------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--------
Confidence 468999999999999999999965422 12345555443322222333 5789999996432211
Q ss_pred HHHHHhhhhcCceeEEecCCCc
Q 005972 475 QKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...++++....
T Consensus 86 --~~~~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 86 --TTAYYRGAMGIILVYDVTDE 105 (213)
T ss_dssp --CHHHHTTCSEEEEEEETTCH
T ss_pred --HHHHhccCCEEEEEEECCCH
Confidence 11234566777777776543
No 267
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.82 E-value=2.3e-05 Score=74.23 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=37.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.+.......+.. .+.++||||..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV-------DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc-------cccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 47999999999999999999965422 2344455443332222332 37899999954
No 268
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.81 E-value=2.9e-05 Score=75.76 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=51.8
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC-CCChHHHHHHHHHHHHhCCCCC
Q 005972 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGGAPK 369 (666)
Q Consensus 291 aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g~~~ 369 (666)
.+.+++|+|+.... . . +....... ..|+++|+||+|+.+. ......+..+++. .+.
T Consensus 130 ~~~~i~vvd~~~~~--~--~----~~~~~~~~---------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~~-- 186 (221)
T 2wsm_A 130 ENYRVVMVSVTEGD--D--V----VEKHPEIF---------RVADLIVINKVALAEAVGADVEKMKADAKL----INP-- 186 (221)
T ss_dssp CSEEEEEEEGGGCT--T--H----HHHCHHHH---------HTCSEEEEECGGGHHHHTCCHHHHHHHHHH----HCT--
T ss_pred cCcEEEEEeCCCcc--h--h----hhhhhhhh---------hcCCEEEEecccCCcchhhHHHHHHHHHHH----hCC--
Confidence 56789999998742 1 1 11111111 1367999999999753 1233334444432 221
Q ss_pred cceEEEEecccCcChhhHHHHHHhhc
Q 005972 370 LNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 370 ~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
...++.+||++|.|+++|++.|.+.+
T Consensus 187 ~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 187 RAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp TSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 23589999999999999999997754
No 269
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.80 E-value=2.9e-05 Score=70.78 Aligned_cols=80 Identities=18% Similarity=0.086 Sum_probs=47.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ..++|+.+........+. .+.++||||.......
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------- 67 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-------ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM--------- 67 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-------CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHH---------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-------ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHH---------
Confidence 478999999999999999998654221 233344333222222332 3678999996532211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 68 -~~~~~~~~~~~i~v~d~~~ 86 (166)
T 2ce2_X 68 -RDQYMRTGEGFLCVFAINN 86 (166)
T ss_dssp -HHHHHHHCSEEEEEEETTC
T ss_pred -HHHhhccCCEEEEEEECCC
Confidence 1123445566666666543
No 270
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.80 E-value=2.1e-05 Score=75.53 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=38.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.|+||||..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 579999999999999999999754321 2334444444333322333 57899999954
No 271
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.80 E-value=4.4e-05 Score=72.63 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=49.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++....... ....|++.....+. ++ ..+.++||||.......
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~--------- 90 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDS----RTTIGVEFSTRTVM--LGTAAVKAQIWDTAGLERYRAI--------- 90 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSC----CCCSSEEEEEEEEE--ETTEEEEEEEEEESCCCTTCTT---------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEE--ECCEEEEEEEEeCCCchhhhhh---------
Confidence 57999999999999999999976533211 12234333322221 22 25689999998543221
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 91 -~~~~~~~~d~vi~v~D~~~ 109 (193)
T 2oil_A 91 -TSAYYRGAVGALLVFDLTK 109 (193)
T ss_dssp -HHHHHTTCCEEEEEEETTC
T ss_pred -hHHHhccCCEEEEEEECCC
Confidence 1233455666677776654
No 272
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.79 E-value=2e-05 Score=74.42 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=49.7
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
...+|+++|.+|||||||+|+|++.. .. ...+..|++...+.+. +..+.++||||.......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~----~~~~t~~~~~~~~~~~---~~~~~~~Dt~G~~~~~~~---------- 78 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD----TISPTLGFNIKTLEHR---GFKLNIWDVGGQKSLRSY---------- 78 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS----SCCCCSSEEEEEEEET---TEEEEEEEECCSHHHHTT----------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC----cccccCccceEEEEEC---CEEEEEEECCCCHhHHHH----------
Confidence 45789999999999999999999765 11 1123334443333322 236789999997432111
Q ss_pred HHHhhhhcCceeEEecCCCc
Q 005972 477 MVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++..+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~ 98 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADR 98 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCG
T ss_pred HHHHhcCCCEEEEEEECcCH
Confidence 01123455666777765543
No 273
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.79 E-value=0.00012 Score=85.29 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=24.0
Q ss_pred eEEEEecccCcChhhHHHHHHhhcCCC
Q 005972 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~GveeLl~~I~~~l~~~ 398 (666)
.+++.||+++.|++.|++.|..++|..
T Consensus 263 Pv~~gSa~~~~Gv~~LLd~i~~~lPsP 289 (704)
T 2rdo_7 263 LVTCGSAFKNKGVQAMLDAVIDYLPSP 289 (704)
T ss_pred EEEEeecccCccHHHHHHHHHHHCCCh
Confidence 388889999999999999999998865
No 274
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.78 E-value=1.9e-05 Score=73.07 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=49.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
...+|+++|.+|||||||+|+|++..... ..+..|.+...+.+. ...+.++||||........
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~~~Dt~G~~~~~~~~--------- 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTYK---NLKFQVWDLGGLTSIRPYW--------- 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEET---TEEEEEEEECCCGGGGGGG---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEEC---CEEEEEEECCCChhhhHHH---------
Confidence 35689999999999999999998654321 112234333322222 2367899999975322211
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|.++...
T Consensus 69 -~~~~~~~d~ii~v~d~~~ 86 (171)
T 1upt_A 69 -RCYYSNTDAVIYVVDSCD 86 (171)
T ss_dssp -GGGCTTCSEEEEEEETTC
T ss_pred -HHHhccCCEEEEEEECCC
Confidence 112345666777776544
No 275
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.78 E-value=1.4e-05 Score=77.84 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=50.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+.. .. -.+.++||||........
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~-------- 78 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKN----YNATVGAVNHPVTFLD-DQGNVIKFNVWDTAGQEKKAVLK-------- 78 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCE----EETTTTEEEEEEEEEB-TTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceeeEEEEEEe-CCCcEEEEEEEecCCchhhchHH--------
Confidence 5899999999999999999996543211 1244454444333321 11 137899999975433211
Q ss_pred HHHHhhhhcCceeEEecCCCcc
Q 005972 476 KMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~l 497 (666)
.......+...+.++.....
T Consensus 79 --~~~~~~~d~~i~v~d~~~~~ 98 (218)
T 4djt_A 79 --DVYYIGASGAILFFDVTSRI 98 (218)
T ss_dssp --HHHHTTCSEEEEEEETTCHH
T ss_pred --HHHhhcCCEEEEEEeCCCHH
Confidence 12234456666666665443
No 276
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.77 E-value=5.3e-05 Score=72.52 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=48.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++.... +..++||.+.......++. .+.++||||.........
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------ 86 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYP-------TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP------ 86 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH------
Confidence 468999999999999999999975421 2445566554433322333 456999999865432211
Q ss_pred HHHHHhhhhcCceeEEecCCCc
Q 005972 475 QKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~ 496 (666)
...+..+...+.++....
T Consensus 87 ----~~~~~~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 87 ----LCYTNTDIFLLCFSVVSP 104 (201)
T ss_dssp ----GGGTTCSEEEEEEETTCH
T ss_pred ----hhcCCCcEEEEEEECCCH
Confidence 123455666676665443
No 277
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.77 E-value=9.1e-06 Score=94.41 Aligned_cols=133 Identities=12% Similarity=0.068 Sum_probs=73.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccce-----ee-cccccC------CCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVK-----VS-KLTEAP------IPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~-----~~-~~t~S~------~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+|+|||||+|+|+...+.. +. ..++++ .+|+|+........+. ..+.|+||||......
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 90 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTV 90 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHH
Confidence 579999999999999999999543221 00 001122 3666665433322232 3689999999864221
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcC
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVG 544 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g 544 (666)
......+..+...+.++..+.........+..+.....++ +.+.||++.......++.+.++..++
T Consensus 91 ----------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~---ilviNK~Dl~~~~~~~~~~~l~~~l~ 156 (693)
T 2xex_A 91 ----------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR---IVFVNKMDKLGANFEYSVSTLHDRLQ 156 (693)
T ss_dssp ----------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE---EEEEECTTSTTCCHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCE---EEEEECCCccccchHHHHHHHHHHhC
Confidence 1223456688889999987766555443333333333443 34567887654444445555555544
No 278
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.76 E-value=2.3e-05 Score=83.48 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=51.5
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHH
Q 005972 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+...+.. .+.++|+|++|+|+....... ... +..++... ....|+|+|+||+|++++.... ..
T Consensus 161 ~~~~~~~~--~i~~~d~iilvv~~~~~~~~~--~~~---~~l~~~~~------~~~~~~i~V~nK~Dl~~~~~~~---~~ 224 (360)
T 3t34_A 161 DIENMVRS--YIEKPNCIILAISPANQDLAT--SDA---IKISREVD------PSGDRTFGVLTKIDLMDKGTDA---VE 224 (360)
T ss_dssp HHHHHHHH--HHHSSSEEEEEEEETTSCGGG--CHH---HHHHHHSC------TTCTTEEEEEECGGGCCTTCCS---HH
T ss_pred HHHHHHHH--HhhcCCeEEEEeecccCCcCC--HHH---HHHHHHhc------ccCCCEEEEEeCCccCCCcccH---HH
Confidence 33444444 567899999999876532211 111 22222211 1345899999999999754321 12
Q ss_pred HHHHHHHhCCCCCcceEEEEecccCcChhhHHH
Q 005972 357 WVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 357 wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~ 389 (666)
.++.+...++ ...+.+|+.++.+++++.+
T Consensus 225 ~~~~~~~~~~----~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 225 ILEGRSFKLK----YPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp HHTTSSSCCS----SCCEEECCCCHHHHHTTCC
T ss_pred HHcCcccccc----CCeEEEEECChHHhccCCC
Confidence 1111111222 2377899999988876543
No 279
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.76 E-value=2.6e-05 Score=71.72 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ..+..|++.....+. ++. .+.++||||......
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~~~~---------- 70 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEF----QESTIGAAFLTQTVC--LDDTTVKFEIWDTAGQERYHS---------- 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT----CCCCSSEEEEEEEEE--ETTEEEEEEEEEECCSGGGGG----------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceEEEEEEEE--ECCEEEEEEEEeCCCcHHhhh----------
Confidence 4799999999999999999996542211 123445554433332 222 578999999542111
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...+.++....
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCH
T ss_pred hhHHhccCCCEEEEEEECCCH
Confidence 122345566777777776543
No 280
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.76 E-value=6.8e-05 Score=71.19 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=49.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+. .. ..+.++||||........
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~-------- 88 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPA----FVSTVGIDFKVKTVY--RHDKRIKLQIWDTAGQERYRTIT-------- 88 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCCCEEEEEEEE--ETTEEEEEEEEECCSCCSSCCSG--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----cCCceeEEEEEEEEE--ECCeEEEEEEEeCCCcHHHhhhH--------
Confidence 4799999999999999999997543211 123345554433332 22 257899999965432211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 89 --~~~~~~~d~ii~v~d~~~ 106 (189)
T 2gf9_A 89 --TAYYRGAMGFLLMYDIAN 106 (189)
T ss_dssp --GGGGTTCSEEEEEEETTC
T ss_pred --HHhccCCCEEEEEEECCC
Confidence 123355666677776644
No 281
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.75 E-value=2.8e-05 Score=73.85 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=49.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ..+..|++.....+. ++. .+.++||||..... ..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~---------~~ 85 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDR----TEATIGVDFRERAVD--IDGERIKIQLWDTAGQERFR---------KS 85 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSS----CCCCCSCCEEEEEEE--ETTEEEEEEEEECCCSHHHH---------TT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCCcceEEEEEEEE--ECCEEEEEEEEECCCchhhh---------hh
Confidence 5899999999999999999986543221 112223332222222 333 57899999953211 01
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...|.++....
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~ 106 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNM 106 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCH
T ss_pred hhHHHhcCCCEEEEEEECcCH
Confidence 122335667778888876553
No 282
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.74 E-value=2.8e-05 Score=73.45 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
..+|+++|.+|||||||+|+|++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4589999999999999999999764
No 283
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.74 E-value=2.8e-05 Score=74.32 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=52.8
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++..... ...+.+|+|.....+. ++ ..+.++||||......
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~--------- 87 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDH----NISPTIGASFMTKTVP--CGNELHKFLIWDTAGQERFHS--------- 87 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCT----TCCCCSSEEEEEEEEE--CSSSEEEEEEEEECCSGGGGG---------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC----CcCCCcceeEEEEEEE--eCCEEEEEEEEcCCCchhhHh---------
Confidence 3589999999999999999999754221 2245677776654443 22 2578999999542211
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++...
T Consensus 88 -~~~~~~~~~d~iilV~d~~~ 107 (192)
T 2fg5_A 88 -LAPMYYRGSAAAVIVYDITK 107 (192)
T ss_dssp -GTHHHHTTCSEEEEEEETTC
T ss_pred -hhHHhhccCCEEEEEEeCCC
Confidence 11223455667777776544
No 284
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.73 E-value=2.6e-05 Score=72.10 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=32.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++...... ..+.+|.+.......++. .+.++||||....
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA------HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc------ccCCCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence 3689999999999999999986543322 112223332222222332 4678999998643
No 285
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.72 E-value=4.1e-05 Score=73.55 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=53.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g~ 367 (666)
..++.+++|+|+.+... + ..+ ..++..+... .....|+++|+||+||.... ........ +....++
T Consensus 100 ~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~----l~~~~~~ 166 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLT-Y-ENV-ERWLKELRDH------ADSNIVIMLVGNKSDLRHLRAVPTDEARA----FAEKNGL 166 (191)
T ss_dssp TTCCEEEEEEETTCHHH-H-HTH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHH----HHHHTTC
T ss_pred hcCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHHH----HHHHcCC
Confidence 45788999999876321 0 111 1112222221 11346899999999997532 22222233 3344443
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||+++.|++++++.|.+.
T Consensus 167 ----~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 167 ----SFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 26779999999999999988753
No 286
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.72 E-value=4e-05 Score=72.91 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=49.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++.....+. ..+..|++...+.. -...+.|+||||........
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~---------- 80 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFEK---GRVAFTVFDMGGAKKFRGLW---------- 80 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEEE---TTEEEEEEEECCSGGGGGGG----------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEEe---CCEEEEEEECCCCHhHHHHH----------
Confidence 358999999999999999999976533211 12344544333221 12367899999985332211
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...|+++....
T Consensus 81 ~~~~~~~d~ii~v~D~~~~ 99 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDH 99 (199)
T ss_dssp GGGCTTCSEEEEEEETTCG
T ss_pred HHHHhcCCEEEEEEECCcH
Confidence 1223456667777776543
No 287
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.72 E-value=3.4e-05 Score=73.99 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=49.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++..... ..+..|.+...+.+. +..+.++||||........
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~---------- 84 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAIG---NIKFTTFDLGGHIQARRLW---------- 84 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEET---TEEEEEEECCCSGGGTTSG----------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEEC---CEEEEEEECCCCHHHHHHH----------
Confidence 4689999999999999999999754321 123445554433332 2367899999986432211
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 85 ~~~~~~~d~~i~v~d~~~ 102 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAAD 102 (190)
T ss_dssp GGGCTTCCEEEEEEETTC
T ss_pred HHHHhcCCEEEEEEECCC
Confidence 012345566677766554
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0001 Score=69.90 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=20.3
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhh
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKL 226 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~ 226 (666)
..+..+++|.+|+|||+| |++.+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456778899999997655 99888763
No 289
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.70 E-value=6.8e-05 Score=75.98 Aligned_cols=89 Identities=19% Similarity=0.076 Sum_probs=54.6
Q ss_pred ccCEEEEEEecCCCC-CCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHh-CCC
Q 005972 290 NAGVVVMVVDCVDFD-GMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA-GGA 367 (666)
Q Consensus 290 ~aDvVV~VVDa~Df~-gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~-~g~ 367 (666)
++|++++|+|+.+.. .++ ..+... +..+.... .....|++||+||+||.... .+. -.+.+.+. .+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~-~~~~~~-l~~i~~~~-----~~~~~piilV~NK~Dl~~~~----~v~-~~~~~~~~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF-DDQLKF-VSNLYNQL-----AKTKKPIVVVLTKCDEGVER----YIR-DAHTFALSKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CH-HHHHHH-HHHHHHHH-----HHTTCCEEEEEECGGGBCHH----HHH-HHHHHHHTSSSC
T ss_pred cCCEEEEEEECCCCchhhH-HHHHHH-HHHHHHHh-----ccCCCCEEEEEEcccccccH----HHH-HHHHHHHhcCCC
Confidence 689999999998851 122 222222 22232210 01346899999999996432 122 22233333 243
Q ss_pred CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.++.+||++|.|+++|++.|.+.
T Consensus 230 ----~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 230 ----QVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----eEEEEECCCCCCHHHHHHHHHHH
Confidence 38899999999999999988754
No 290
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.70 E-value=3.4e-05 Score=72.12 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=49.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++....... ....|++.....+. ++. .+.++||||......
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~---------- 76 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----ESTIGAAFFSQTLA--VNDATVKFEIWDTAGQERYHS---------- 76 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTS----CCCSCCSEEEEEEE--ETTEEEEEEEEECCCSGGGGG----------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcC----CCCceeEEEEEEEE--ECCEEEEEEEEeCCCChhhhh----------
Confidence 57999999999999999999975432110 12223333332222 222 578999999542111
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...+.++....
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~ 97 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQ 97 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCH
T ss_pred hhHHHhccCCEEEEEEECCCH
Confidence 112334566777777776543
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=2.5e-05 Score=71.90 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=47.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
.+|+++|.+|||||||+|+|++...... ..+....+++..+.... -...+.++||||...... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~----------~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES---YIPTVEDTYRQVISCDK-SICTLQITDTTGSHQFPA----------MQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS---CCCCSCEEEEEEEEETT-EEEEEEEEECCSCSSCHH----------HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCCccccEEEEEEECC-EEEEEEEEECCCchhhHH----------HHH
Confidence 4799999999999999999997542211 11122333433322211 011468999999653221 112
Q ss_pred HhhhhcCceeEEecCCC
Q 005972 479 EIRKELQPRTYRVKARQ 495 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~ 495 (666)
...+..+...+.++..+
T Consensus 70 ~~~~~~~~~i~v~d~~~ 86 (172)
T 2erx_A 70 LSISKGHAFILVYSITS 86 (172)
T ss_dssp HHHHHCSEEEEEEETTC
T ss_pred HhcccCCEEEEEEECcC
Confidence 23455667777776554
No 292
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.70 E-value=2.7e-05 Score=75.19 Aligned_cols=82 Identities=15% Similarity=0.064 Sum_probs=44.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++...... ..|.++.+.......++. .+.|+||||...... +
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---- 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQD------SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS----V---- 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC----C----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCcc------CCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH----H----
Confidence 35899999999999999999997543221 233333232221112332 578999999532111 0
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++..+
T Consensus 91 --~~~~~~~~d~~i~v~d~~~ 109 (200)
T 2o52_A 91 --TRSYYRGAAGALLVYDITS 109 (200)
T ss_dssp --CHHHHTTCSEEEEEEETTC
T ss_pred --HHHHhccCCEEEEEEECcC
Confidence 1123445666666666544
No 293
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=5.9e-05 Score=71.33 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=50.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ...+..|++.....+. ++. .+.|+||||......
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~---------- 79 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDP----ELAATIGVDFKVKTIS--VDGNKAKLAIWDTAGQERFRT---------- 79 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT----TCCCCCSEEEEEEEEE--ETTEEEEEEEEEECSSGGGCC----------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCc----cCCCccceEEEEEEEE--ECCeEEEEEEEeCCCchhhhh----------
Confidence 589999999999999999998754221 1123344444433332 222 478999999543221
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
......+..+...|+++....
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~ 100 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRR 100 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCH
T ss_pred hhHHHhccCCEEEEEEECcCH
Confidence 112344567777787776543
No 294
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.69 E-value=9.9e-06 Score=91.70 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=33.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
.+..+|+|++|+|+.++. .. .....++..+.. ...|+++|+||+|+++..
T Consensus 185 ~l~~aD~il~VvDa~~~~-~~--~~~~~~l~~l~~---------~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 185 FAERVDLIILLFDAHKLE-IS--DEFSEAIGALRG---------HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp HHHHCSEEEEEEETTSCC-CC--HHHHHHHHHTTT---------CGGGEEEEEECGGGSCHH
T ss_pred HHHhCCEEEEEEeCCcCC-CC--HHHHHHHHHHHh---------cCCCEEEEEECCCccCHH
Confidence 456799999999998742 22 122334443332 235799999999998643
No 295
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.69 E-value=0.00029 Score=79.72 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=40.9
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
|++ ||..-+.+ ++.-+|-+|+|||+.. |-.++. +.++..+.+ .+.|.|+++||+|....
T Consensus 108 PGHvDF~~Ev~r------aL~~~DgAvlVvda~~--GV~~qT--~~v~~~a~~---------~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYR------VLTAVDSALVVIDAAK--GVEAQT--RKLMDVCRM---------RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHH------HHHSCSEEEEEEETTT--BSCHHH--HHHHHHHHH---------TTCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHH------HHHhcCceEEEeecCC--Cccccc--HHHHHHHHH---------hCCceEEEEecccchhc
Confidence 765 56555554 3445899999999988 666654 345555544 34578999999998643
No 296
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.68 E-value=8e-05 Score=70.74 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=49.5
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++....... .....|.+...+.+. +..+.++||||........
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~~---------- 84 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKSS---SLSFTVFDMSGQGRYRNLW---------- 84 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEECS---SCEEEEEEECCSTTTGGGG----------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEEC---CEEEEEEECCCCHHHHHHH----------
Confidence 468999999999999999999976521111 112223222222211 2468999999965433211
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...|.++....
T Consensus 85 ~~~~~~~d~ii~v~d~~~~ 103 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDR 103 (190)
T ss_dssp GGGGGGCSEEEEEEETTCH
T ss_pred HHHHhcCCEEEEEEECCCH
Confidence 1233556777777776543
No 297
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.67 E-value=4e-05 Score=71.38 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=48.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC----CceEEEECCCCCCCCcccccCChhh
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP----AKAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~----~~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
.+|+++|.+|||||||+|+|++...... ..|.++.+.......++ ..+.++||||.......
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------- 72 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQ------YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM-------- 72 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHH------HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT--------
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCC------CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch--------
Confidence 5799999999999999999997543211 11222222211111122 25789999996533221
Q ss_pred HHHHHhhhhcCceeEEecCCCc
Q 005972 475 QKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...++++....
T Consensus 73 --~~~~~~~~d~~i~v~d~~~~ 92 (178)
T 2hxs_A 73 --LDKYIYGAQGVLLVYDITNY 92 (178)
T ss_dssp --HHHHHTTCSEEEEEEETTCH
T ss_pred --hhHHHhhCCEEEEEEECCCH
Confidence 12335667777887776543
No 298
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.67 E-value=5e-05 Score=73.60 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=61.6
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|+..... ...++|+.+.......++. .+.++||||........
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------- 95 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR------- 95 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-------C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCC-------CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHH-------
Confidence 468999999999999999999965422 2345566554443322332 34599999984322211
Q ss_pred HHHHHhhhhcCceeEEecCCCcccccce--EEEeecccc--cceEEEEEecCCccccc
Q 005972 475 QKMVEIRKELQPRTYRVKARQAVHVGGL--MRLDLDQAS--VETIYVTVWASPNVSLH 528 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~l~lggl--~rld~l~~~--~~~v~~~v~~s~~l~~h 528 (666)
....+..+...++++......+..+ .++..+... ..++ +.+.||.++.
T Consensus 96 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi---ilv~nK~Dl~ 147 (204)
T 4gzl_A 96 ---PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI---ILVGTKLDLR 147 (204)
T ss_dssp ---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE---EEEEECHHHH
T ss_pred ---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE---EEEEechhhc
Confidence 1123455666777766544333322 223333221 2333 3455777754
No 299
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.67 E-value=3.4e-05 Score=74.58 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=47.4
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHH
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
+..+|+++|.+|||||||+|+|++..... ..+..|++...+.+.+ ..+.++||||........
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-----~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~~~~~~--------- 86 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-----HVPTLHPTSEELTIAG---MTFTTFDLGGHIQARRVW--------- 86 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEETT---EEEEEEEECC----CCGG---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-----cCCCCCceeEEEEECC---EEEEEEECCCcHhhHHHH---------
Confidence 35689999999999999999998754321 1234455544433322 367899999965433211
Q ss_pred HHHhhhhcCceeEEecCCC
Q 005972 477 MVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 87 -~~~~~~~d~~i~v~D~~~ 104 (198)
T 1f6b_A 87 -KNYLPAINGIVFLVDCAD 104 (198)
T ss_dssp -GGGGGGCSEEEEEEETTC
T ss_pred -HHHHhcCCEEEEEEECCC
Confidence 112345666777777543
No 300
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.67 E-value=5.3e-05 Score=72.66 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=49.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ..+..|++.....+. +.. .+.++||||..... .
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~----------~ 72 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPA----FVSTVGIDFKVKTIY--RNDKRIKLQIWDTAGLERYR----------T 72 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSC----CCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGGGH----------H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----cCCccceeEEEEEEE--ECCeEEEEEEEECCCchhhc----------c
Confidence 4799999999999999999997543211 123335444433332 222 57899999974211 1
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...++++...
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~ 92 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITN 92 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTC
T ss_pred hHHHhhcCCCEEEEEEECcC
Confidence 11223455666777776554
No 301
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.66 E-value=5.7e-05 Score=70.94 Aligned_cols=82 Identities=17% Similarity=0.025 Sum_probs=47.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|+..... ...+.|+.........++. .+.++||||.......
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------- 82 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV-------DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM-------- 82 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH--------
Confidence 358999999999999999999965322 1223333322222222333 2567999995432211
Q ss_pred HHHHHhhhhcCceeEEecCCCc
Q 005972 475 QKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...+.++..+.
T Consensus 83 --~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 83 --REQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp --HHHHHHHCSEEEEEEETTCH
T ss_pred --HHHHHhcCCEEEEEEECCCH
Confidence 12234556777777766543
No 302
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.66 E-value=1.6e-05 Score=74.72 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=23.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ....|+++.+.......+++ .+.++||||...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFN------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 57999999999999999999864321 12334455554332222333 578999999643
No 303
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.66 E-value=4.4e-05 Score=84.81 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccce-------------------------eecccccCCCCceeEE
Q 005972 387 LLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVK-------------------------VSKLTEAPIPGTTLGI 441 (666)
Q Consensus 387 Ll~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~-------------------------~~~~t~S~~PGTT~~~ 441 (666)
+..++.. ..+..+|+++|.+|+|||||+|+|++..... .........+|+|.+.
T Consensus 23 i~~~l~~-~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~ 101 (483)
T 3p26_A 23 ISAFVKS-ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI 101 (483)
T ss_dssp HHHHHHH-SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC
T ss_pred HHHHHhc-CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe
Confidence 4444443 2335689999999999999999998652211 1122334567888876
Q ss_pred EEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccc
Q 005972 442 LRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 442 ~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
....... ...+.|+||||.... ...+.......+...+.++..+..+.
T Consensus 102 ~~~~~~~~~~~~~iiDTPG~~~f----------~~~~~~~~~~aD~~llVvDa~~g~~~ 150 (483)
T 3p26_A 102 CTSHFSTHRANFTIVDAPGHRDF----------VPNAIMGISQADMAILCVDCSTNAFE 150 (483)
T ss_dssp CEEEEECSSCEEEEECCCCCGGG----------HHHHHHHHTTCSEEEEEEECCC----
T ss_pred eeEEEecCCceEEEEECCCcHHH----------HHHHHHhhhhCCEEEEEEECCCCccc
Confidence 5443322 236899999998431 22344556778888999988765443
No 304
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.65 E-value=5e-05 Score=71.10 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=46.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++..... ....|+.+.......++. .+.++||||........
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------- 70 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPG-------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------- 70 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS-------SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG--------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC-------CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHH--------
Confidence 479999999999999999998644221 222333332222222222 45699999985332111
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 71 --~~~~~~~d~~i~v~d~~~ 88 (186)
T 1mh1_A 71 --PLSYPQTDVSLICFSLVS 88 (186)
T ss_dssp --GGGCTTCSEEEEEEETTC
T ss_pred --HHhccCCcEEEEEEECCC
Confidence 012344566666666544
No 305
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.65 E-value=5.1e-05 Score=73.87 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=37.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPP------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCT------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC------CCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 589999999999999999998654211 1233334443322222333 5789999995
No 306
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.64 E-value=0.0001 Score=70.77 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=48.6
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++...... ..+..|++.....+. ++. .+.|+||||.....
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~~~---------- 91 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFREN----ISATLGVDFQMKTLI--VDGERTVLQLWDTAGQERFR---------- 91 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC--------------CEEEEEE--ETTEEEEEEEEECTTCTTCH----------
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCcc----CCCCccceeEEEEEE--ECCEEEEEEEEECCCCcchh----------
Confidence 46899999999999999999987542211 123445444333222 222 47899999954221
Q ss_pred HHHHHhhhhcCceeEEecCCCcc
Q 005972 475 QKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~l 497 (666)
.......+..+...++++.....
T Consensus 92 ~~~~~~~~~~d~iilv~d~~~~~ 114 (199)
T 2p5s_A 92 SIAKSYFRKADGVLLLYDVTCEK 114 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHH
T ss_pred hhHHHHHhhCCEEEEEEECCChH
Confidence 11223456677788888765443
No 307
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.64 E-value=6.9e-05 Score=73.52 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=45.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++....... .+..|++.....+. ++. .+.|+||||.........
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~------- 80 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDS----KSTIGVEFATRTLE--IEGKRIKAQIWDTAGQERYRAITS------- 80 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC----------CCSEEEEEEE--ETTEEEEEEEECCTTTTTTTCCCG-------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEE--ECCEEEEEEEEECCCccchhhhHH-------
Confidence 57999999999999999999975432211 11222222222222 333 578999999654332111
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
...+..+...++++...
T Consensus 81 ---~~~~~~d~vilV~D~~~ 97 (223)
T 3cpj_B 81 ---AYYRGAVGALIVYDISK 97 (223)
T ss_dssp ---GGTTTCCEEEEEEC-CC
T ss_pred ---HHhccCCEEEEEEeCCC
Confidence 12344556666666544
No 308
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.64 E-value=6.6e-05 Score=71.60 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=36.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...+.|+.+.......++. .+.|+||||...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI-------SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC-------cccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 58999999999999999999975421 2334455443322222332 467899999754
No 309
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.64 E-value=3.6e-05 Score=73.38 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=47.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++....... ....|++.....+. ++. .+.|+||||.......
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~--------- 86 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMVN--IDGKQIKLQIWDTAGQESFRSI--------- 86 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---------CCSSEEEEEEE--ETTEEEEEEEECCTTGGGTSCC---------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEE--ECCEEEEEEEEECCCchhhhhh---------
Confidence 47999999999999999999975432211 12233333322222 333 5789999995432211
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
.....+..+...+.++...
T Consensus 87 -~~~~~~~~d~ii~v~d~~~ 105 (191)
T 2a5j_A 87 -TRSYYRGAAGALLVYDITR 105 (191)
T ss_dssp -CHHHHTTCSEEEEEEETTC
T ss_pred -HHHHhccCCEEEEEEECCC
Confidence 1123455666777777654
No 310
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.62 E-value=5.3e-05 Score=72.89 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=37.6
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~ 464 (666)
..+|+++|.+|||||||+|+|++..... ..+.|+.........+. -.+.|+||||.....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 86 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSE-------GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-------CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCC-------CCCCccceEEEEEEEECCEEEEEEEEECCCccchH
Confidence 3589999999999999999999754321 22333333222111111 246899999965433
No 311
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.62 E-value=3.5e-05 Score=74.42 Aligned_cols=58 Identities=24% Similarity=0.223 Sum_probs=38.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|++||.+|||||||+|+|++..... +..|++|.+.......++. .+.++||||...
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDS------AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCG------GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCc------cCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 579999999999999999998543211 2345555443332222333 356789999753
No 312
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.61 E-value=1.3e-05 Score=77.01 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=38.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++..... ...|++|.+.......++. .+.|+||||....
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 95 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTE------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCC------HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 589999999999999999999754321 1234444333222222333 5789999996543
No 313
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=0.0002 Score=68.44 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=48.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++..... ....|+.........++. .+.++||||... ..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~--------- 90 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIW-------EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TI--------- 90 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCS-------CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CH---------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-------ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-cc---------
Confidence 4689999999999999999999754321 122222221121112232 478999999875 11
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...+.++...
T Consensus 91 -~~~~~~~~~d~iilv~D~~~ 110 (196)
T 2atv_A 91 -QREGHMRWGEGFVLVYDITD 110 (196)
T ss_dssp -HHHHHHHHCSEEEEEEETTC
T ss_pred -chhhhhccCCEEEEEEECcC
Confidence 11233455667777777654
No 314
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.60 E-value=7.5e-05 Score=71.18 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=47.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++.... .....|+.........++. .+.++||||........
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------- 88 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIP-------TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR-------- 88 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG--------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-------CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHh--------
Confidence 58999999999999999999975421 1233344333222222232 35899999954222111
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...+.++....
T Consensus 89 --~~~~~~~d~~i~v~d~~~~ 107 (194)
T 3reg_A 89 --PLSYADSDVVLLCFAVNNR 107 (194)
T ss_dssp --GGGCTTCSEEEEEEETTCH
T ss_pred --HhhccCCcEEEEEEECCCH
Confidence 1123445666666665543
No 315
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.60 E-value=5.5e-05 Score=73.94 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=51.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|+...... ..++.+|+|.....+. +.. .+.++||||........
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~----~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~-------- 81 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLVFH--TNRGPIKFNVWDTAGQEKFGGLR-------- 81 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTC----EEETTTTEEEEEEEEE--ETTEEEEEEEEEECSGGGTSCCC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEE--ECCEEEEEEEEeCCChHHHhHHH--------
Confidence 579999999999999999966433211 1246788888765543 222 57899999954322211
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...++++....
T Consensus 82 --~~~~~~~~~~i~v~d~~~~ 100 (221)
T 3gj0_A 82 --DGYYIQAQCAIIMFDVTSR 100 (221)
T ss_dssp --HHHHTTCCEEEEEEETTCH
T ss_pred --HHHHhcCCEEEEEEECCCH
Confidence 1233455666666665543
No 316
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.60 E-value=0.00011 Score=75.81 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=56.2
Q ss_pred HHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCc
Q 005972 389 AFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHL 465 (666)
Q Consensus 389 ~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~ 465 (666)
+.+........+|+++|.+|||||||+|+|+..... ...++||.+.......++. .+.++||||......
T Consensus 146 ~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFP-------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCCC-------CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT
T ss_pred ccchhcccceeEEEEECCCCCChHHHHHHHHhCCCC-------cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH
Confidence 333344455678999999999999999999865321 2455666665443322332 345999999753322
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
.. ....+..+...++++.....
T Consensus 219 ~~----------~~~~~~~d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 219 LR----------PLSYPQTDVFLICFSLVSPA 240 (332)
T ss_dssp TG----------GGGCTTCSEEEEEEETTCHH
T ss_pred HH----------HHhccCCCEEEEEEeCCCHH
Confidence 11 11234566677777765533
No 317
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.60 E-value=6.1e-06 Score=93.10 Aligned_cols=113 Identities=20% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCCcccccCChhh
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
....|.++|.+|+|||||+|+|++.... ....||+|.+.......+ +..+.|+||||......+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~------~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~------ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA------AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA------ 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH------HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc------cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH------
Confidence 3457999999999999999999875432 235688888754333223 23689999999643322111
Q ss_pred HHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 475 QKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
...+..+...+.++............+..+.....++ +.+.||++..
T Consensus 71 ----~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPi---IVViNKiDl~ 117 (537)
T 3izy_P 71 ----RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI---VLAINKCDKA 117 (537)
T ss_dssp ----SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCE---EECCBSGGGT
T ss_pred ----HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE---EEEEeccccc
Confidence 1123355666777666554444333333333333342 3456676653
No 318
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=5.6e-05 Score=73.19 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=44.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ..|.++... .....++. .+.|+||||.........
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~------~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV------YVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRP------- 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------------CCEE-EEEEEETTEEEEEEEEECTTCTTCTTTGG-------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc------CCCcccceE-EEEEEECCEEEEEEEEECCCcHHHHHHHH-------
Confidence 5899999999999999999997543211 112222222 11112333 578999999754332110
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
...+..+...+.++...
T Consensus 92 ---~~~~~~d~~i~v~d~~~ 108 (207)
T 2fv8_A 92 ---LSYPDTDVILMCFSVDS 108 (207)
T ss_dssp ---GGCTTCCEEEEEEETTC
T ss_pred ---hhcCCCCEEEEEEECCC
Confidence 12344566666665543
No 319
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.59 E-value=8.2e-05 Score=69.90 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=47.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEE-EEeeEeC------------CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGIL-RIGGILP------------AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~-~~~~~l~------------~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.. ......+ ..+.++||||.....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~- 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNS------KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR- 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC------SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCc------CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-
Confidence 579999999999999999999654221 11222222221 0011112 157899999973211
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.......+..+...+.++....
T Consensus 85 ---------~~~~~~~~~~d~~i~v~d~~~~ 106 (195)
T 3bc1_A 85 ---------SLTTAFFRDAMGFLLLFDLTNE 106 (195)
T ss_dssp ---------HHHHHTTTTCSEEEEEEETTCH
T ss_pred ---------HHHHHHHcCCCEEEEEEECCCH
Confidence 1122345566777777776543
No 320
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.58 E-value=3e-05 Score=72.28 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=33.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC----CceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP----AKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~----~~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++ ..+.++||||..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQ------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT------TC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCc------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 579999999999999999999754221 122322222222211122 156899999943
No 321
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.57 E-value=7.6e-05 Score=72.31 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC----CceEEEECCCCCCCCcccccCChh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP----AKAKLYDTPGLLHPHLMSMRLNRD 473 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~----~~~~liDTPGi~~~~~~~~~L~~~ 473 (666)
..+|+++|.+|||||||+|+|++.... ...+.++.+...+. ++ ..+.|+||||......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~-------- 69 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYR-------DTQTSITDSSAIYK--VNNNRGNSLTLIDLPGHESLRF-------- 69 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCC-------CBCCCCSCEEEEEE--CSSTTCCEEEEEECCCCHHHHH--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-------cccCCcceeeEEEE--ecCCCccEEEEEECCCChhHHH--------
Confidence 358999999999999999999975422 23455555544432 33 2479999999752110
Q ss_pred hHHHHHhhhhcCceeEEecCCC
Q 005972 474 EQKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 474 ~~~~~~~~kel~~~~f~l~~~~ 495 (666)
.......+..+...|.++...
T Consensus 70 -~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 70 -QLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp -HHHHHHGGGEEEEEEEEETTT
T ss_pred -HHHHHHHhhCCEEEEEEECCC
Confidence 011123556677777777654
No 322
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.55 E-value=1.4e-05 Score=85.30 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=21.0
Q ss_pred CccEEEEeecCCChhhHHHhhhc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~ 420 (666)
...|.++|.||||||||+|+|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 323
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.55 E-value=7.2e-05 Score=68.70 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=46.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVE 479 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~~~ 479 (666)
+|+++|.+|||||||+|+|++...... .+..|.+.. .+.. -...+.++||||..... .....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~--~~~~-~~~~~~i~Dt~G~~~~~----------~~~~~ 63 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVE--TVEY-KNISFTVWDVGGQDKIR----------PLWRH 63 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEE--EEEC-SSCEEEEEECCCCGGGH----------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEE--EEEE-CCEEEEEEEcCCChhhH----------HHHHH
Confidence 689999999999999999986542211 111222211 1211 12468999999974211 11223
Q ss_pred hhhhcCceeEEecCCC
Q 005972 480 IRKELQPRTYRVKARQ 495 (666)
Q Consensus 480 ~~kel~~~~f~l~~~~ 495 (666)
..+..+...+.++...
T Consensus 64 ~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSND 79 (164)
T ss_dssp HTTTCSEEEEEEETTC
T ss_pred HhccCCEEEEEEECCC
Confidence 3566677777777654
No 324
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.55 E-value=0.00023 Score=76.59 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.2
Q ss_pred CceeeeccCCCchHHHH-HHHhhhh
Q 005972 202 GFTPAGVGYGNITEELV-ERSKKKK 225 (666)
Q Consensus 202 G~~~a~vGrpNvg~slL-n~l~~~K 225 (666)
|+..++||+||+|||+| |++.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45667899999996655 9998876
No 325
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.54 E-value=8.6e-05 Score=72.47 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=32.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ....|+.+.......++. .+.|+||||..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPE-------SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-------CCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 3589999999999999999999654221 223343333222222333 47899999964
No 326
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.54 E-value=0.00018 Score=76.30 Aligned_cols=87 Identities=14% Similarity=0.003 Sum_probs=48.6
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhC---
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG--- 365 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~--- 365 (666)
..+|++++|+|+...+. . ..+...+.. .+.++|+||+|+.+... ....+.+.+....
T Consensus 167 ~~~d~vl~v~d~~~~~~--~----~~i~~~i~~-----------~~~ivvlNK~Dl~~~~~---~s~~~~~~l~~a~~l~ 226 (337)
T 2qm8_A 167 DLTDFFLVLMLPGAGDE--L----QGIKKGIFE-----------LADMIAVNKADDGDGER---RASAAASEYRAALHIL 226 (337)
T ss_dssp TTSSEEEEEECSCC------------CCTTHHH-----------HCSEEEEECCSTTCCHH---HHHHHHHHHHHHHTTB
T ss_pred hhCCEEEEEEcCCCccc--H----HHHHHHHhc-----------cccEEEEEchhccCchh---HHHHHHHHHHHHHHhc
Confidence 57899999999754210 0 001000111 13577889999875321 1112222222111
Q ss_pred CC--CC-cceEEEEecccCcChhhHHHHHHhhc
Q 005972 366 GA--PK-LNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~--~~-~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
.. .. ...++++||+++.|+++|++.|.+++
T Consensus 227 ~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 227 TPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 10 00 13589999999999999999998764
No 327
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.53 E-value=0.00039 Score=70.78 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=32.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
..+|++++|+|+... ++. ..+..++..+..... .. ...|+++|+||+|+.+..
T Consensus 118 ~~~d~il~v~~~d~~--~~~-~~~~~~~~~l~~~~~-~~---~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY--RVD-NLDKLVAKAITDSFG-KG---IWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCC--CCC-HHHHHHHHHHHHHHC-GG---GGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCC--cCC-HHHHHHHHHHHHHhC-cc---cccCEEEEEECcccCCcC
Confidence 468999999888542 222 233344555543211 00 014899999999998654
No 328
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.53 E-value=6.8e-05 Score=72.50 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=46.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++...... ..|.++.+.......++. .+.|+||||..... .
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~ 93 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSER------QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR----------T 93 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------------CEEEEEEEETTEEEEEEEECCTTCGGGH----------H
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCC------CCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH----------H
Confidence 5799999999999999999986542211 122222232222222333 67899999953211 1
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
......+..+...++++...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~ 113 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITK 113 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTB
T ss_pred HHHHHHhhCCEEEEEEECCC
Confidence 12234566677777777654
No 329
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.53 E-value=7.1e-05 Score=71.23 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=48.2
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++...... ..+..|.+.. .+.. -...+.++||||...... ..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~--~~~~-~~~~~~l~Dt~G~~~~~~----------~~ 84 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMR--KITK-GNVTIKLWDIGGQPRFRS----------MW 84 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEE--EEEE-TTEEEEEEEECCSHHHHT----------TH
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEE--EEEe-CCEEEEEEECCCCHhHHH----------HH
Confidence 35899999999999999999996543211 1122333322 2221 123678999999542111 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...|.++...
T Consensus 85 ~~~~~~~d~ii~v~D~~~ 102 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAAD 102 (188)
T ss_dssp HHHHTTCSEEEEEEETTC
T ss_pred HHHHccCCEEEEEEECCC
Confidence 223456677777777654
No 330
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.52 E-value=4.3e-05 Score=86.09 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=69.3
Q ss_pred CccEEEEeecCCChhhHHHhhhcccccee--e--------ccccc------CCCCceeEEEEEeeEeC-CceEEEECCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKV--S--------KLTEA------PIPGTTLGILRIGGILP-AKAKLYDTPGL 460 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~--------~~t~S------~~PGTT~~~~~~~~~l~-~~~~liDTPGi 460 (666)
..+|+++|.+|+|||||+|+|+...+... + ..+++ ..+|+|.........+. ..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 36899999999999999999996432210 0 01111 24555543222221122 36799999998
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHH
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWK 540 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~ 540 (666)
..... .+.......+...+.++..+.+...-...+..+.....++ +.+.||++.........-+-++
T Consensus 93 ~df~~----------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi---ivviNK~Dl~~~~~~~~~~~i~ 159 (529)
T 2h5e_A 93 EDFSE----------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI---LTFMNKLDRDIRDPMELLDEVE 159 (529)
T ss_dssp TTCCH----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE---EEEEECTTSCCSCHHHHHHHHH
T ss_pred hhHHH----------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE---EEEEcCcCCccccHHHHHHHHH
Confidence 54221 1233456788888999887655433222233333333343 3456777764433223333344
Q ss_pred hhcC
Q 005972 541 NHVG 544 (666)
Q Consensus 541 k~~g 544 (666)
+.++
T Consensus 160 ~~l~ 163 (529)
T 2h5e_A 160 NELK 163 (529)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 4444
No 331
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.52 E-value=0.00014 Score=69.65 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=46.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|+....... .+..|.+...+.. -...+.++||||....... .
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~----------~ 90 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY---KNICFTVWDVGGQDKIRPL----------W 90 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE---TTEEEEEEECC-----CTT----------H
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE---CCEEEEEEECCCCHhHHHH----------H
Confidence 46899999999999999999986543211 1112222111111 1236789999998542221 1
Q ss_pred HHhhhhcCceeEEecCCCc
Q 005972 478 VEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~~ 496 (666)
....+..+...+.++..+.
T Consensus 91 ~~~~~~~d~iilv~D~~~~ 109 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDR 109 (192)
T ss_dssp HHHHHTCCEEEEEEETTCG
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 2234667777887776543
No 332
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00016 Score=69.88 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=37.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|+..... ...+.|+.+.......++. .+.++||||....
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP-------TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-------SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-------ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHH
Confidence 57999999999999999999965421 1233343332222222332 5789999998543
No 333
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=8.1e-05 Score=70.83 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=47.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhhH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
.+|+++|.+|||||||+|+|++.... ...+.|+.+.......++. .+.++||||.........
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~------- 84 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP-------EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------- 84 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-------CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------
Confidence 57999999999999999999975321 1333444333222222332 468899999764332111
Q ss_pred HHHHhhhhcCceeEEecCCC
Q 005972 476 KMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~ 495 (666)
...+..+...+.++...
T Consensus 85 ---~~~~~~d~~i~v~d~~~ 101 (194)
T 2atx_A 85 ---LSYPMTDVFLICFSVVN 101 (194)
T ss_dssp ---GGCTTCSEEEEEEETTC
T ss_pred ---HhcCCCCEEEEEEECCC
Confidence 12344566666666543
No 334
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.49 E-value=6.2e-05 Score=72.45 Aligned_cols=59 Identities=24% Similarity=0.085 Sum_probs=34.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|++||.+|||||||+|+|++...... +..+.++.+.......+++ .+.++||+|...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMD-----SDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC---------GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcC-----ccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 4799999999999999999996433211 1223333332222222333 346789999654
No 335
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=7.5e-05 Score=70.99 Aligned_cols=84 Identities=18% Similarity=0.059 Sum_probs=46.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++...... .......+++..+.+.. ....+.++||||...... ..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----------~~ 73 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDT---YIPTIEDTYRQVISCDK-SVCTLQITDTTGSHQFPA----------MQ 73 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCT---TSCCCCEEEEEEEEETT-EEEEEEEEECCGGGSCHH----------HH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCc---ccCccccceeEEEEECC-EEEEEEEEeCCChHHhHH----------HH
Confidence 46899999999999999999987542211 00111222222222110 011578999999543221 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 74 ~~~~~~~d~~i~v~d~~~ 91 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTS 91 (199)
T ss_dssp HHHHHHCSEEEEEEETTC
T ss_pred HHhhccCCEEEEEEECcC
Confidence 223455666667666544
No 336
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.47 E-value=0.00016 Score=73.41 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=32.0
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
..+|++++|+|+.... + ...+..+++.|..... .. ..+|+++|+||+|+.+.
T Consensus 115 ~~~~~il~V~~~d~~~--~-~~~~~~~~~~l~~~~~-~~---~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 115 RTIDVLLYVDRLDVYA--V-DELDKQVVIAITQTFG-KE---IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp CEECEEEEEEESSCSC--C-CHHHHHHHHHHHHHHC-GG---GGGGEEEEEECTTCCCS
T ss_pred CCCCEEEEEEcCCCCC--C-CHHHHHHHHHHHHHhc-hh---hhcCEEEEEeCcccCCC
Confidence 4789999998875532 2 2233445555554321 00 12389999999999754
No 337
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.46 E-value=5.8e-05 Score=87.66 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=71.6
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--ec----ccccC------CCCceeEEEEEeeEeC-CceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SK----LTEAP------IPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~----~t~S~------~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|.++|.+|+|||||+|+|+...+... +. .++.+ ..|+|.........+. ..+.|+||||......
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 92 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTI 92 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHH
Confidence 5799999999999999999985322110 00 01111 3466655333222222 3679999999854211
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcC
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVG 544 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g 544 (666)
......+..+...+.++..+.........+..+.....++ +.+.||++..........+.++..++
T Consensus 93 ----------~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~---ivviNKiD~~~~~~~~~~~~l~~~l~ 158 (691)
T 1dar_A 93 ----------EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR---IAFANKMDKTGADLWLVIRTMQERLG 158 (691)
T ss_dssp ----------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE---EEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCE---EEEEECCCcccCCHHHHHHHHHHHhC
Confidence 1223456678888888887665544333333333333343 34568888655444555555666555
No 338
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.45 E-value=7.3e-05 Score=72.58 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=21.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+|+|++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 589999999999999999999754
No 339
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=3.4e-05 Score=73.59 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=49.9
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
.+|+++|.+|||||||+|+|++....... ....|++.....+.... .-.+.|+||||.... ....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 89 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAF----VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY----------RTIT 89 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCE----EEEETTTEEEEEEEETTTTEEEEEECHHHHHHC----------HHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCccc----CCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH----------HHHH
Confidence 58999999999999999999975432211 12235555544432110 124789999993211 1112
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...++++...
T Consensus 90 ~~~~~~~d~~i~v~d~~~ 107 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITN 107 (191)
T ss_dssp HHHHTTCCEEEEEEETTC
T ss_pred HHHHccCCEEEEEEECcC
Confidence 234556677777777654
No 340
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.44 E-value=4.5e-05 Score=71.32 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=42.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|+..... ...++|+.+.......+. -.+.++||||........
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------- 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP-------TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR------- 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-----------------CBCCCC-------CEEECCCC-CTTTTTG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-------CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhH-------
Confidence 468999999999999999999965421 123334333221111111 245699999965432211
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 74 ---~~~~~~~d~~i~v~d~~~ 91 (182)
T 3bwd_D 74 ---PLSYRGADVFILAFSLIS 91 (182)
T ss_dssp ---GGGGTTCSEEEEEEETTC
T ss_pred ---HhhccCCCEEEEEEECCC
Confidence 112345566677776544
No 341
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.43 E-value=5.5e-05 Score=81.42 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=50.0
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCcccccCChhhHHHH
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~~~~~~ 478 (666)
+|+++|.+|+|||||+|+|+. +|+|.+........ +..+.++||||..... ..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~----------~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTL----------KSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------------EEEESSSEEEEECSSSSEEEEEECTTTTTCH----------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh--------------CCEEEEeeEEEEecCCeEEEEEECCChHHHH----------HHHH
Confidence 799999999999999999981 34444433322222 2368999999975321 2234
Q ss_pred HhhhhcCceeEEecCCCccc
Q 005972 479 EIRKELQPRTYRVKARQAVH 498 (666)
Q Consensus 479 ~~~kel~~~~f~l~~~~~l~ 498 (666)
...+..+...+.++ .....
T Consensus 79 ~~~~~aD~ailVvd-~~g~~ 97 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLD 97 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCC
T ss_pred HHHHHCCEEEEEEc-CCCCc
Confidence 44577888888888 55443
No 342
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.43 E-value=4.8e-05 Score=81.51 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=39.9
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHH---HHHHHHhCC
Q 005972 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW---VRHRAKAGG 366 (666)
Q Consensus 290 ~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w---l~~~~k~~g 366 (666)
.+++++++|+... .++. .++..++..+. ...|+|+|+||+|++.... +..+ +....+..+
T Consensus 145 rv~~~vy~I~~~~--~~l~-~~d~~~~~~l~----------~~~piIlV~NK~Dl~~~~e----v~~~k~~i~~~~~~~~ 207 (361)
T 2qag_A 145 RVHCCFYFISPFG--HGLK-PLDVAFMKAIH----------NKVNIVPVIAKADTLTLKE----RERLKKRILDEIEEHN 207 (361)
T ss_dssp CCCEEEEEECSSS--SSCC-HHHHHHHHHTC----------S-SCEEEEEECCSSSCHHH----HHHHHHHHHHHTTCC-
T ss_pred ceEEEEEEEecCC--CCcc-hhHHHHHHHhc----------cCCCEEEEEECCCCCCHHH----HHHHHHHHHHHHHHCC
Confidence 3457888887522 1222 23333333321 3468999999999986432 3322 222223344
Q ss_pred CCCcceEEEEecccCcC---hhhHHHHHHhhc
Q 005972 367 APKLNGVYLVSARKDLG---VRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~G---veeLl~~I~~~l 395 (666)
+ .++.+||+++.+ +..|.+.|.+..
T Consensus 208 i----~~~~~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 208 I----KIYHLPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp C----CSCCCC---------CHHHHHHHHHTC
T ss_pred C----CEEeCCCcCCCcchhHHHHHHHHHhcC
Confidence 3 378899999987 223444444433
No 343
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.55 E-value=2e-05 Score=75.93 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=36.2
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|++..... ....|+.+........+ -.+.++||||...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPG-------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4689999999999999999998643221 22334433222111111 1356999999754
No 344
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.42 E-value=5.2e-05 Score=72.46 Aligned_cols=58 Identities=28% Similarity=0.286 Sum_probs=16.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCcee-EEEEEeeEeCC-----ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTL-GILRIGGILPA-----KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~-~~~~~~~~l~~-----~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++...... +..+.|+. +.......++. .+.++||||..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFL-----KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEC---------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc-----CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 5899999999999999999997521111 12233332 32222222332 47899999973
No 345
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.42 E-value=0.00025 Score=77.54 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=53.8
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCCcccccCChhhH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
...|++||.+|+|||||+|+|++... .++..|.||+....-...++ ..+.++||||+.........+. .
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~---~ 227 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG---L 227 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC---H
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh---H
Confidence 35799999999999999999987532 23467887765432211222 4578999999975322111121 1
Q ss_pred HHHHhhhhcCceeEEecCC
Q 005972 476 KMVEIRKELQPRTYRVKAR 494 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~ 494 (666)
.+.......+...+.++..
T Consensus 228 ~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT
T ss_pred HHHHHHHHHHhhhEEeCCc
Confidence 2222234456666666653
No 346
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.41 E-value=0.00012 Score=69.40 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=33.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe------CCceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l------~~~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++....... ...|.++.+.......+ .-.+.++||||..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~----~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG----MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC----CcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 47999999999999999999974211110 11222233433222111 2257899999964
No 347
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.40 E-value=4.4e-05 Score=87.45 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=56.4
Q ss_pred CCccEEEEeecCCChhhHHHhhhccccceeec-------------------------ccccCCCCceeEEEEEeeEe-CC
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSK-------------------------LTEAPIPGTTLGILRIGGIL-PA 450 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~-------------------------~t~S~~PGTT~~~~~~~~~l-~~ 450 (666)
+..+|++||.+|+|||||+|+|++........ .+....+|+|++........ ..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 35789999999999999999999764322110 00112378887754332222 23
Q ss_pred ceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 451 KAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 451 ~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.+.|+||||.... ...+....+..+...+.++....
T Consensus 246 ~~~iiDTPG~e~f----------~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 246 NFTIVDAPGHRDF----------VPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp EEEEEECCSSSCH----------HHHHTTTSSCCSEEEEEEECSHH
T ss_pred eEEEEECCCCccc----------HHHHHHHHhhcCceEEEEECCCC
Confidence 6899999997431 11222334566777888887654
No 348
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.40 E-value=9.9e-05 Score=71.10 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=36.5
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ...|.++.+.... ..++. .+.++||||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPE------VYVPTVFENYIAD-IEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS------SCCCSSCCCCEEE-EEETTEEEEEEEECCCCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCc------ccCCcccceEEEE-EEECCEEEEEEEEECCCch
Confidence 3589999999999999999999754321 1223333322111 11333 56899999954
No 349
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.40 E-value=0.00016 Score=76.86 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred cEEEEeecCCChhhHHHhhhcccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~ 423 (666)
.|+|||.+|||||||+|+|++...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 899999999999999999998653
No 350
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.39 E-value=0.00046 Score=79.41 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=41.3
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ ||...+.+ ++.-+|.+|+|||+.. |-.++. +.++..+.+. +.|.|+++||+|....+
T Consensus 75 PGH~DF~~Ev~r------aL~~~DgavlVVDa~~--GV~~qT--~~v~~~a~~~---------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 75 PGHMDFLAEVYR------SLSVLDGAILLISAKD--GVQAQT--RILFHALRKM---------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp CCSSSTHHHHHH------HHTTCSEEECCEESSC--TTCSHH--HHHHHHHHHH---------TCSCEECCEECCSSSCC
T ss_pred CCcHHHHHHHHH------HHHHhCEEEEEEeCCC--CCcHHH--HHHHHHHHHc---------CCCeEEEEeccccccCC
Confidence 766 67666655 3455899999999988 766654 3455555442 23668999999986543
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.39 E-value=0.0002 Score=67.66 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+|+|++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999999754
No 352
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.39 E-value=0.00013 Score=68.14 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=35.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++..... ..+..|++. .....++. .+.++||||...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-----LEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC-----CSSCSSSEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-----cCCCcceeE---EEEEEECCEEEEEEEEECCCCch
Confidence 579999999999999999999754321 112223221 11111222 467899999653
No 353
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.38 E-value=3.5e-05 Score=81.89 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=27.2
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhc
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~ 420 (666)
.+++.+.-....+..+.++|.+|+|||||+|.|++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555544445667889999999999999999984
No 354
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.00012 Score=72.28 Aligned_cols=58 Identities=24% Similarity=0.095 Sum_probs=34.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|++||.+|||||||+|++++...... +..+.++.+.......+++ .+.++||+|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~-----~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMD-----SDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTC-----CC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-----CcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 5799999999999999999986433211 1223333332222222333 34688999853
No 355
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=78.25 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=29.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeeccc-ccCC--CCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT-EAPI--PGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t-~S~~--PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|++||.+|||||||+|+|++........+. .+.. |+++.+...+.....+ .+.++||||+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 57899999999999999999875433221100 0111 2222232222111111 478999999954
No 356
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.36 E-value=3.7e-05 Score=83.29 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=68.7
Q ss_pred CccEEEEeecCCChhhHHHhhhcc---ccc--e------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKK---EGV--K------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~---~~~--~------~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
..+|.++|.+|+|||||+|+|++. .+. . .........+|+|.+........ ...+.|+||||....
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH--
Confidence 358999999999999999999873 110 0 00001112467787764443222 246899999997531
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccce-EEEEEecCCccccc
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVET-IYVTVWASPNVSLH 528 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~-v~~~v~~s~~l~~h 528 (666)
...+.......+...+.++..+.....-...+..+.....+ + +.+.||++..
T Consensus 89 --------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~i---ivviNK~Dl~ 141 (405)
T 2c78_A 89 --------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI---VVFMNKVDMV 141 (405)
T ss_dssp --------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCE---EEEEECGGGC
T ss_pred --------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE---EEEEECcccc
Confidence 12334456678888899988765443322223333222223 2 2345777653
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.36 E-value=9.2e-05 Score=71.90 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=48.2
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+++|.+|||||||+|+|++...... ..+..|+++.+. ....+.++||||........ ...+
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~------~~~~ 76 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADY------DGSGVTLVDFPGHVKLRYKL------SDYL 76 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTG------GGSSCEEEECCCCGGGTHHH------HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEEEe------eCceEEEEECCCcHHHHHHH------HHHH
Confidence 45899999999999999999997542211 112334443322 23468999999985322110 1111
Q ss_pred HHhhhhcCceeEEecCC
Q 005972 478 VEIRKELQPRTYRVKAR 494 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~ 494 (666)
.......+...|.++..
T Consensus 77 ~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDST 93 (218)
T ss_dssp HHHGGGEEEEEEEEETT
T ss_pred HhccccCCEEEEEEECC
Confidence 11112256677777765
No 358
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.32 E-value=0.00026 Score=67.46 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=34.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|+....... ..| |.+.......++. .+.++||||..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~------~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQE------ESP--EGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCC------CCT--TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC------cCC--CcceEEEEEEECCEEEEEEEEECCCCh
Confidence 5899999999999999999987543211 111 2221111112332 45779999974
No 359
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.32 E-value=3.8e-05 Score=87.63 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=29.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceee-------------------------cccccCCCCceeEEEEEeeEeC-Cce
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS-------------------------KLTEAPIPGTTLGILRIGGILP-AKA 452 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~-------------------------~~t~S~~PGTT~~~~~~~~~l~-~~~ 452 (666)
.+|+++|.+|+|||||+|+|+...+.... .......+|+|++........+ ..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 57999999999999999999754322111 0111236789988755432222 367
Q ss_pred EEEECCCCCC
Q 005972 453 KLYDTPGLLH 462 (666)
Q Consensus 453 ~liDTPGi~~ 462 (666)
.|+||||...
T Consensus 258 ~iiDTPGh~~ 267 (592)
T 3mca_A 258 EIGDAPGHRD 267 (592)
T ss_dssp -CCEEESSSE
T ss_pred EEEECCChHH
Confidence 8999999763
No 360
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.30 E-value=9e-05 Score=81.79 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.3
Q ss_pred ccEEEEeecCCChhhHHHhhhcc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+.|.|+|.+|+|||||+|.|++.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 35778999999999999999964
No 361
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.30 E-value=0.00019 Score=78.46 Aligned_cols=90 Identities=22% Similarity=0.182 Sum_probs=51.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec-----ccccCCCCc----------------------eeEEEEEeeEe-CC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK-----LTEAPIPGT----------------------TLGILRIGGIL-PA 450 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~-----~t~S~~PGT----------------------T~~~~~~~~~l-~~ 450 (666)
.++.++|.+|+|||||+|+|++........ ..++..+|| |.+........ ..
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 579999999999999999998754321110 011233444 44422211111 22
Q ss_pred ceEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCccc
Q 005972 451 KAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVH 498 (666)
Q Consensus 451 ~~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~ 498 (666)
.+.|+||||... + ...+.......+...+.++..+...
T Consensus 105 ~~~iiDtpGh~~-------f---~~~~~~~~~~aD~~ilVvDa~~g~~ 142 (434)
T 1zun_B 105 KFIIADTPGHEQ-------Y---TRNMATGASTCDLAIILVDARYGVQ 142 (434)
T ss_dssp EEEEEECCCSGG-------G---HHHHHHHHTTCSEEEEEEETTTCSC
T ss_pred eEEEEECCChHH-------H---HHHHHHHHhhCCEEEEEEECCCCCc
Confidence 578999999532 1 1223345677888899998876543
No 362
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.30 E-value=0.00026 Score=69.18 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=36.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ....|+.........++. .+.|+||||..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-------TYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCS-------SCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-------CcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 4689999999999999999998754221 222233222222212222 46899999964
No 363
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.28 E-value=0.00028 Score=67.80 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=35.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+++++|.+|||||||+|+|++...... ..|.++.+.......+++ .+.++||||...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLE------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---------CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCC------CCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 4789999999999999999997543221 123222222111112333 356799999653
No 364
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.28 E-value=0.00031 Score=68.36 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=45.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCCCcccccCChhh
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~~~~~~~L~~~~ 474 (666)
..+|+++|.+|||||||+|+|++..... ...|.+..+. .....++. .+.|+||||........
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------- 93 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPE------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR------- 93 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS------SCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTG-------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC------CcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH-------
Confidence 3589999999999999999999754321 1122211111 11112222 46899999964322111
Q ss_pred HHHHHhhhhcCceeEEecCCC
Q 005972 475 QKMVEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 475 ~~~~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...+.++...
T Consensus 94 ---~~~~~~~d~~ilv~D~~~ 111 (205)
T 1gwn_A 94 ---PLSYPDSDAVLICFDISR 111 (205)
T ss_dssp ---GGGCTTCSEEEEEEETTC
T ss_pred ---HhhccCCCEEEEEEECCC
Confidence 012344566666666554
No 365
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.27 E-value=0.00026 Score=82.35 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=75.4
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--ec----ccccC------CCCceeEEEEEeeEeC--------CceEEEECC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SK----LTEAP------IPGTTLGILRIGGILP--------AKAKLYDTP 458 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~----~t~S~------~PGTT~~~~~~~~~l~--------~~~~liDTP 458 (666)
.+|+|+|.+|+|||||+++|+...+... +. .+..+ ..|+|.........+. ..+.|+|||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 5899999999999999999985432110 00 01111 3566665433322222 367899999
Q ss_pred CCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHH
Q 005972 459 GLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEI 538 (666)
Q Consensus 459 Gi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~ 538 (666)
|...... ......+..+...+.+++.+.....-...+........++ +.+.||++......+++.+-
T Consensus 91 G~~df~~----------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~---ilviNKiD~~~~~~~~~~~~ 157 (704)
T 2rdo_7 91 GHVDFTI----------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPR---IAFVNKMDRMGANFLKVVNQ 157 (704)
T ss_pred CccchHH----------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCE---EEEEeCCCcccccHHHHHHH
Confidence 9864221 1223345677888888876654333222222222222333 33568888765555555555
Q ss_pred HHhhcCC
Q 005972 539 WKNHVGI 545 (666)
Q Consensus 539 ~~k~~g~ 545 (666)
++..++.
T Consensus 158 l~~~l~~ 164 (704)
T 2rdo_7 158 IKTRLGA 164 (704)
T ss_pred HHHHhCC
Confidence 5555554
No 366
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.26 E-value=0.00021 Score=78.06 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=44.2
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+.+.|......++.++++|.+|+|||||+|.|++......+.++. ..+-+|+..+.+.........++|+||+..+
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~-~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT-GVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC-CC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE-CCeecceeEEeccccccCCeeehHhhcccch
Confidence 3444454444456789999999999999999999843221111111 1112333322222112246899999999743
No 367
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.25 E-value=7.9e-05 Score=82.93 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=59.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccce-eecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCCcccccCChhhHH
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVK-VSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~-~~~~t~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~~~~~~L~~~~~~ 476 (666)
.+|+++|.+|+|||||+|+|++..... .........+|+|.+.......++. .+.++||||... + ...
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~---~~~ 89 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------L---IRA 89 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------H---HHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------H---HHH
Confidence 579999999999999999999754211 1222345678888875332222333 689999999621 1 123
Q ss_pred HHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 477 MVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 477 ~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
+.......+...+.++..+.+.......+..++....+. +.+.||+++.
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~---IvviNK~Dl~ 138 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI---IVVITKSDNA 138 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB---CEEEECTTSS
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE---EEEEECCCcc
Confidence 344556678888888876644322222222222222333 3345777653
No 368
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.25 E-value=0.0021 Score=74.71 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=39.2
Q ss_pred Cch-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCC
Q 005972 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP 346 (666)
Q Consensus 270 P~~-d~~~~L~~~l~~P~al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp 346 (666)
|++ ||..-+.+ ++.-+|-+|+|||+.. |-.++. +.++....+. +.|.|+++||+|...
T Consensus 93 PGHvDF~~Ev~~------aLr~~DgavlvVDave--GV~~qT--~~v~~~a~~~---------~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 93 PGHVDFTIEVER------SLRVLDGAVVVFCGTS--GVEPQS--ETVWRQANKY---------GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CSCTTCHHHHHH------HHHHCSEEEEEEETTT--CSCHHH--HHHHHHHHHH---------TCCEEEEEECSSSTT
T ss_pred CCCcccHHHHHH------HHHHhCeEEEEEECCC--CCchhH--HHHHHHHHHc---------CCCeEEEEccccccC
Confidence 765 66665554 4455899999999988 666543 3344444332 346899999999864
No 369
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.23 E-value=0.00016 Score=80.15 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=49.7
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|++||.+|||||||+|+|++..... ..+..|++...+.+. +..+.|+||||....... .
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~-----~~~T~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~----------~ 383 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVTYK---NVKFNVWDVGGQDKIRPL----------W 383 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEESS---SCEEEEEEECCCGGGSGG----------G
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccceeEEEEEeC---CEEEEEEECCCcHHHHHH----------H
Confidence 3689999999999999999999765221 123334443332221 236899999995432221 1
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...++++...
T Consensus 384 ~~~~~~ad~~i~V~D~~~ 401 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCAD 401 (497)
T ss_dssp GGGGTTCCEEEEEEETTC
T ss_pred HHHhccCCEEEEEEECcc
Confidence 123455677777777654
No 370
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.22 E-value=0.00045 Score=66.16 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=36.0
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
..++++|.+|||||||+|+|++...... ..|.++.+.......+++ ...++||||...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLE------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCS------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC------CCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 4789999999999999999997543211 223333332221112332 245699999864
No 371
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.19 E-value=5.5e-05 Score=84.67 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=41.2
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
...|.++|.+|+|||||+|+|++... .....+|+|.+.......++ ..+.++||||....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v------~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKV------ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHH------SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCC------ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH
Confidence 45899999999999999999986431 12345777766432221122 36899999997543
No 372
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.18 E-value=0.00036 Score=72.80 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCCCccEEEEee
Q 005972 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGA 406 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~~~~v~vvG~ 406 (666)
..++++|+||.|++..... .....-+..+.+..+++ ++.+||+++ |+++++..+.+.+......++||.
T Consensus 155 ~~~iilV~~K~Dl~~~~e~-~~~~~~~~~~~~~~~~~----~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~avigs 223 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKER-ERLKKRILDEIEEHNIK----IYHLPDAES-DEDEDFKEQTRLLKASIPFSVVGS 223 (301)
T ss_dssp TSCEEEEECCGGGSCHHHH-HHHHHHHHHHHHHTTCC----CCCCC----------CHHHHHHHHTTCSEECCCC
T ss_pred cCCEEEEEEeCCCCCHHHH-HHHHHHHHHHHHHcCCe----EEecCCccc-cccHHHHHHHHHhhcCCCceEECC
Confidence 3479999999999864221 11112223334555643 788999999 999988777665443444555553
No 373
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.18 E-value=0.00041 Score=66.42 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=50.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEee--EeCCceEEEECCCCCCCCcccccCChhhH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG--ILPAKAKLYDTPGLLHPHLMSMRLNRDEQ 475 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~--~l~~~~~liDTPGi~~~~~~~~~L~~~~~ 475 (666)
..+|+++|.+|||||||+|.|.+..... .+ ...+.|...+.... .-.-.+.++||||......... .
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~---- 88 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ET--LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF--D---- 88 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GG--GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC--C----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ce--eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh--h----
Confidence 3689999999999999999998753221 11 11122222222211 0123689999999654322110 0
Q ss_pred HHHHhhhhcCceeEEecCCCc
Q 005972 476 KMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 476 ~~~~~~kel~~~~f~l~~~~~ 496 (666)
.....+..+...|+++..+.
T Consensus 89 -~~~~~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 89 -YEMIFRGTGALIYVIDAQDD 108 (196)
T ss_dssp -HHHHHHTCSEEEEEEETTSC
T ss_pred -cccccccCCEEEEEEECCCc
Confidence 02344567778888887664
No 374
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.13 E-value=0.00082 Score=73.43 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=65.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCC----CC----CCChHHHHHHHH
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL----PS----QVSPTRLDRWVR 359 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLL----pk----~~~~~~L~~wl~ 359 (666)
+.+.+.+++ ++...+ ..-...+...|.. ..+|+++|+||.|++ |. ......+...++
T Consensus 146 L~~~~~~~~-lS~G~~-----~kqrv~la~aL~~---------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 146 FYEYDFFII-ISATRF-----KKNDIDIAKAISM---------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp GGGCSEEEE-EESSCC-----CHHHHHHHHHHHH---------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred CCccCCeEE-eCCCCc-----cHHHHHHHHHHHh---------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHH
Confidence 445566665 776542 1223334455543 346899999999986 11 112344555555
Q ss_pred HHH----HhCCCCCcceEEEEec--ccCcChhhHHHHHHhhcCCCccEE-EEeecCCChhhH
Q 005972 360 HRA----KAGGAPKLNGVYLVSA--RKDLGVRNLLAFIKELAGPRGNVW-VIGAQNAGKSTL 414 (666)
Q Consensus 360 ~~~----k~~g~~~~~~V~~VSA--kkg~GveeLl~~I~~~l~~~~~v~-vvG~~NVGKSTL 414 (666)
.+. .+.|.+ ...++++|+ .++.|+++|.+.|.+.+|++...+ +.=.+++...++
T Consensus 211 ~l~~~~l~~~g~~-~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~ 271 (413)
T 1tq4_A 211 LNCVNTFRENGIA-EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVI 271 (413)
T ss_dssp HHHHHHHHHTTCS-SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHH
T ss_pred HHHHHHHHhcCCC-CCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHH
Confidence 543 233321 346899999 566779999999999988764333 233466665444
No 375
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.11 E-value=0.00017 Score=82.45 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=62.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec---------ccccCCCCceeEEEEEeeEeC------CceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK---------LTEAPIPGTTLGILRIGGILP------AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~---------~t~S~~PGTT~~~~~~~~~l~------~~~~liDTPGi~~~ 463 (666)
.++.++|.+|+|||||+++|+...+..... .......|.|.........+. ..+.|+||||....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 479999999999999999998743321100 001123566665332222121 25689999997532
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHV 543 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~ 543 (666)
.. .+....+..+...+.++..+......+..+........++ +.+.||++......++..+-+++.+
T Consensus 85 ~~----------ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipi---IvViNKiDl~~a~~~~v~~ei~~~l 151 (599)
T 3cb4_D 85 SY----------EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV---VPVLNKIDLPAADPERVAEEIEDIV 151 (599)
T ss_dssp HH----------HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEE---EEEEECTTSTTCCHHHHHHHHHHHT
T ss_pred HH----------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE---EEeeeccCcccccHHHHHHHHHHHh
Confidence 11 1233456678888888886655444332222111222333 3456777764433333333344444
Q ss_pred C
Q 005972 544 G 544 (666)
Q Consensus 544 g 544 (666)
|
T Consensus 152 g 152 (599)
T 3cb4_D 152 G 152 (599)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.03 E-value=0.0014 Score=70.58 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=30.8
Q ss_pred CcEEEEEECCCC--CCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHH
Q 005972 333 PKLVLVGTKVDL--LPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 333 kpvILVlNKiDL--Lpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~ 389 (666)
+|+++|+||.|. ... .... ...-++.+.+..|. .++++||+...++.+|.+
T Consensus 202 KPvi~v~N~~e~d~~~~-~~n~-~~~~v~~~a~~~g~----~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDG-RGNP-QVEAVRRKALEEGA----EVVVVSARLEAELAELSG 254 (368)
T ss_dssp SCEEEEEECCGGGTTTC-TTCH-HHHHHHHHHHHHTC----EEEEECHHHHHHHHTSCH
T ss_pred CCeEEeccccHHhhccc-chhh-HHHHHHHHHHHcCC----eEEEeechhHHHHHHhch
Confidence 699999999973 332 0011 12222333333343 489999999887776654
No 377
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.02 E-value=0.00019 Score=82.08 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=64.3
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec---------ccccCCCCceeEEE--EEeeEe-C---CceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK---------LTEAPIPGTTLGIL--RIGGIL-P---AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~---------~t~S~~PGTT~~~~--~~~~~l-~---~~~~liDTPGi~~~ 463 (666)
.++.++|.+|+|||||+|+|+...+..... .......|.|.... .+.... + ..+.|+||||....
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 478999999999999999998643221100 00112355554321 111111 1 14679999998642
Q ss_pred CcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhc
Q 005972 464 HLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHV 543 (666)
Q Consensus 464 ~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~ 543 (666)
.. .+.......+...+.++..+.....-+..+........++ +.+.||++......+...+-+++.+
T Consensus 87 ~~----------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipi---IvviNKiDl~~a~~~~v~~el~~~l 153 (600)
T 2ywe_A 87 SY----------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI---IPVINKIDLPSADVDRVKKQIEEVL 153 (600)
T ss_dssp HH----------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEE---EEEEECTTSTTCCHHHHHHHHHHTS
T ss_pred HH----------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCE---EEEEeccCccccCHHHHHHHHHHhh
Confidence 11 1223346677888888887765443322222111222332 3456777764433333333344444
Q ss_pred C
Q 005972 544 G 544 (666)
Q Consensus 544 g 544 (666)
|
T Consensus 154 g 154 (600)
T 2ywe_A 154 G 154 (600)
T ss_dssp C
T ss_pred C
Confidence 4
No 378
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.00053 Score=72.31 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=45.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCCcccccCChhhHHH
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~~~~~ 477 (666)
..+|+|+|.+|||||||+|+|++..... ..|-+..+...+.. -...+.|+||||-..... ..
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~-------~~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~----------~~ 226 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP----------LW 226 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEE-------EEEETTEEEEEEEE-TTEEEEEEECC-----CC----------SH
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCC-------cccccceEEEEEec-CcEEEEEEECCCCHhHHH----------HH
Confidence 4589999999999999999998765321 12311122222221 123678999999432211 11
Q ss_pred HHhhhhcCceeEEecCCC
Q 005972 478 VEIRKELQPRTYRVKARQ 495 (666)
Q Consensus 478 ~~~~kel~~~~f~l~~~~ 495 (666)
....+..+...++++...
T Consensus 227 ~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp HHHHTTEEEEEEEEETTC
T ss_pred HHHhccCCEEEEEEECCc
Confidence 233456677777777643
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.97 E-value=0.00046 Score=73.47 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=26.2
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.++..+....+....|+++|.+|||||||+|+|...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444444433344567899999999999999999743
No 380
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.95 E-value=0.00035 Score=75.54 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=56.5
Q ss_pred ccEEEEeecCCChhhHHHhhhccccce----------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~----------~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~ 467 (666)
.+|+++|.+|+|||||+|+|++..... ....+....+|+|.+........ ...+.|+||||....
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f---- 79 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY---- 79 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH----
Confidence 579999999999999999998641100 00111123578888865443222 247899999997421
Q ss_pred ccCChhhHHHHHhhhhcCceeEEecCCCccc
Q 005972 468 MRLNRDEQKMVEIRKELQPRTYRVKARQAVH 498 (666)
Q Consensus 468 ~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~ 498 (666)
...+.......+...+.++..+...
T Consensus 80 ------~~~~~~~~~~aD~~ilVvda~~g~~ 104 (397)
T 1d2e_A 80 ------VKNMITGTAPLDGCILVVAANDGPM 104 (397)
T ss_dssp ------HHHHHHTSSCCSEEEEEEETTTCSC
T ss_pred ------HHHHHhhHhhCCEEEEEEECCCCCC
Confidence 1123344556777788888766443
No 381
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.93 E-value=0.0011 Score=72.67 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCcc--EEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005972 388 LAFIKELAGPRGN--VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 388 l~~I~~~l~~~~~--v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
++.+.-..+.+.. +++||.+|+|||||+|.|++..... .......|++++..+.+..... ...+++||||+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g--~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEG--EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccC--CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 4555444555656 8999999999999999999864211 1111234677766443321111 2578999999975
Q ss_pred C
Q 005972 463 P 463 (666)
Q Consensus 463 ~ 463 (666)
.
T Consensus 108 ~ 108 (427)
T 2qag_B 108 Q 108 (427)
T ss_dssp -
T ss_pred c
Confidence 3
No 382
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.92 E-value=0.00019 Score=79.34 Aligned_cols=88 Identities=24% Similarity=0.202 Sum_probs=53.9
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-Cce
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AKA 452 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~-------------------------~~~t~S~~PGTT~~~~~~~~~l~-~~~ 452 (666)
.+|+++|.+|+|||||+|+|++...... ........+|+|.+........+ ..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 5789999999999999999986421100 00011123788876533322122 368
Q ss_pred EEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 453 KLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 453 ~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.|+||||... + ...+.......+...+.++..+.
T Consensus 88 ~iiDtPGh~~-------f---~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHRD-------F---IKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCTT-------H---HHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcHH-------H---HHHHHhhhhhCCEEEEEEeCCcC
Confidence 9999999531 1 12234455677788888887654
No 383
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.91 E-value=0.00062 Score=72.15 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=26.6
Q ss_pred hhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhc
Q 005972 385 RNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 385 eeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~ 420 (666)
..++..+.-....+..++++|.+|+|||||+|.|++
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344444443344556788999999999999999974
No 384
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.91 E-value=0.00042 Score=77.72 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=29.0
Q ss_pred cChhhHHHHHHhhcC-----------CCccEEEEeecCCChhhHHHhhhccc
Q 005972 382 LGVRNLLAFIKELAG-----------PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 382 ~GveeLl~~I~~~l~-----------~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.|++.+++++.+... ...+|++||.+|||||||+|+|++..
T Consensus 14 ~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666665554332 12579999999999999999999754
No 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.88 E-value=0.00062 Score=64.06 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+|+++|.+|||||||+|.|.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 579999999999999999887654
No 386
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.82 E-value=0.00033 Score=83.07 Aligned_cols=85 Identities=19% Similarity=0.100 Sum_probs=47.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC--CCh----HHHHHHHHH
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ--VSP----TRLDRWVRH 360 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~--~~~----~~L~~wl~~ 360 (666)
++..+|.+|+|+|+.+. ..... ..++..+.. .+.|+++|+||+|+...+ ... ..+...+..
T Consensus 118 ~l~~aD~ailVvDa~~g--~~~qt--~~~~~~~~~---------~~~p~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~ 184 (842)
T 1n0u_A 118 ALRVTDGALVVVDTIEG--VCVQT--ETVLRQALG---------ERIKPVVVINKVDRALLELQVSKEDLYQTFARTVES 184 (842)
T ss_dssp HHHTCSEEEEEEETTTB--SCHHH--HHHHHHHHH---------TTCEEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEEeCCCC--CCHHH--HHHHHHHHH---------cCCCeEEEEECCCcchhhhccCHHHHHHHHHHHHHH
Confidence 44569999999999983 33332 222222222 345889999999997321 111 223333333
Q ss_pred HHHhC--------C---CC-CcceEEEEecccCcCh
Q 005972 361 RAKAG--------G---AP-KLNGVYLVSARKDLGV 384 (666)
Q Consensus 361 ~~k~~--------g---~~-~~~~V~~VSAkkg~Gv 384 (666)
....+ + .. -...|.+.|+++|||.
T Consensus 185 i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 185 VNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp HHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred HHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 32221 1 11 1225888999999874
No 387
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.82 E-value=0.00096 Score=72.42 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHH
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKA 229 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~ 229 (666)
.|...++||.||+||||| |.|.+.+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~ 48 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNP 48 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccc
Confidence 477888999999996655 99998775333
No 388
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.78 E-value=0.0004 Score=76.07 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=48.5
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEe-CCce
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGIL-PAKA 452 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~-------------------------~~~t~S~~PGTT~~~~~~~~~l-~~~~ 452 (666)
.+++++|.+|+|||||+|+|+...+... ........+|+|.+........ ...+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 5799999999999999999986421110 0011122578888865433222 2468
Q ss_pred EEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 453 KLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 453 ~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
.|+||||..... ..+.......+...+.++..+.
T Consensus 87 ~iiDtpG~~~f~----------~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 87 TIIDAPGHRDFV----------KNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EECCCSSSTTHH----------HHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEECCCcHHHH----------HHHHhhhhhcCEEEEEEECCCC
Confidence 999999965321 1233445667777888887654
No 389
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.72 E-value=0.0011 Score=65.77 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=33.6
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|++||.+|||||||+++++...-... ..|-+..+........+. .+.|+||+|-...
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~------~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~ 75 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNT------YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF 75 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------------CEEEEEECSSCEEEEEEECCSCTTTC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCC------cCCccceEEEEEEEEecceEEEEEEEECCCchhh
Confidence 4799999999999999999986432211 122112222221111222 4579999996543
No 390
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.72 E-value=0.00046 Score=76.39 Aligned_cols=90 Identities=23% Similarity=0.199 Sum_probs=44.3
Q ss_pred CccEEEEeecCCChhhHHHhhhccccce-------------------------eecccccCCCCceeEEEEEeeEeC-Cc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVK-------------------------VSKLTEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~-------------------------~~~~t~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
..+|.++|.+|+|||||+|+|+...+.. .........+|+|.+........+ ..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 3579999999999999999997532211 000011124678877543222222 36
Q ss_pred eEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcc
Q 005972 452 AKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAV 497 (666)
Q Consensus 452 ~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l 497 (666)
+.|+||||...... .+.......+...+.++..+..
T Consensus 123 ~~iiDtPGh~~f~~----------~~~~~~~~aD~~ilVvDa~~g~ 158 (467)
T 1r5b_A 123 FSLLDAPGHKGYVT----------NMINGASQADIGVLVISARRGE 158 (467)
T ss_dssp EEECCCCC---------------------TTSCSEEEEEEECSTTH
T ss_pred EEEEECCCcHHHHH----------HHHhhcccCCEEEEEEeCCcCc
Confidence 78999999753211 1233446677788888876653
No 391
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.72 E-value=0.00082 Score=72.85 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=51.8
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe---------------C---------CceEE
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL---------------P---------AKAKL 454 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l---------------~---------~~~~l 454 (666)
.+|.++|.+|+|||||+|+|++.... .......+|+|.+.-.....+ + ..+.+
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTD---THSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC-----CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc---cChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 57899999999999999999864321 112223477776532111001 0 35789
Q ss_pred EECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 455 YDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 455 iDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
+||||... + ...+.......+...+.++..+.
T Consensus 88 iDtPGh~~-------f---~~~~~~~~~~~D~~ilVvda~~g 119 (410)
T 1kk1_A 88 IDAPGHEA-------L---MTTMLAGASLMDGAILVIAANEP 119 (410)
T ss_dssp EECSSHHH-------H---HHHHHHCGGGCSEEEEEEETTSC
T ss_pred EECCChHH-------H---HHHHHhhhhhCCEEEEEEECCCC
Confidence 99999421 1 12233344566778888887654
No 392
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.64 E-value=0.00029 Score=80.45 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=60.7
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeecccccCCC-CceeE--EEEEeeE--------e---------CCceEEEECC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIP-GTTLG--ILRIGGI--------L---------PAKAKLYDTP 458 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~P-GTT~~--~~~~~~~--------l---------~~~~~liDTP 458 (666)
..|.++|.+|+|||||+|+|++.... ...| |+|.+ ....... . ..++.|+|||
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~-------~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTP 78 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVA-------SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTP 78 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHS-------CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCc-------cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECC
Confidence 47999999999999999999865321 1223 44433 1111100 0 0147999999
Q ss_pred CCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccc
Q 005972 459 GLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSL 527 (666)
Q Consensus 459 Gi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~ 527 (666)
|......... ...+..+...+.++..+++....+..+..++....++ +.+.||++.
T Consensus 79 Ghe~F~~~~~----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi---IVViNKiDl 134 (594)
T 1g7s_A 79 GHEAFTTLRK----------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF---VVAANKIDR 134 (594)
T ss_dssp TTSCCTTSBC----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCE---EEEEECGGG
T ss_pred CcHHHHHHHH----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeE---EEEeccccc
Confidence 9754432211 1124456677788877655444333333444434453 345677765
No 393
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.64 E-value=0.0012 Score=71.53 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=48.0
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEEEEEeeEe---------------C---------CceE
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL---------------P---------AKAK 453 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~~~~~~~l---------------~---------~~~~ 453 (666)
..+|.++|.+|+|||||+|+|++.... .......+|+|.+.-.....+ + ..+.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTD---RHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCC---C-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc---cCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 358999999999999999999864321 111223577776532111000 1 3578
Q ss_pred EEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCc
Q 005972 454 LYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQA 496 (666)
Q Consensus 454 liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~ 496 (666)
++||||... + ...+.......+...+.++..+.
T Consensus 85 iiDtPGh~~-------f---~~~~~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 85 FVDSPGHET-------L---MATMLSGASLMDGAILVIAANEP 117 (408)
T ss_dssp EEECSSHHH-------H---HHHHHTTCSCCSEEEEEEETTSC
T ss_pred EEECCCHHH-------H---HHHHHHhHhhCCEEEEEEECCCC
Confidence 999999421 1 11122223445677777777643
No 394
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.63 E-value=0.0036 Score=67.68 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.9
Q ss_pred CccEEEEeecCCChhhHHHhhhcc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
..+|+++|.+|+|||||+|+|++.
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999874
No 395
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.62 E-value=0.0026 Score=71.18 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=49.4
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcE-EEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKL-VLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 290 ~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpv-ILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.+|.+++|+|+.. +... . .+...+... .|+ ++|+||+|...+.. . ...+. ..+|.|
T Consensus 213 ~pd~vllVvDa~~--g~~~---~-~~a~~~~~~----------~~i~gvVlNK~D~~~~~g--~-~l~~~----~~~g~P 269 (504)
T 2j37_W 213 QPDNIVYVMDASI--GQAC---E-AQAKAFKDK----------VDVASVIVTKLDGHAKGG--G-ALSAV----AATKSP 269 (504)
T ss_dssp CCSEEEEEEETTC--CTTH---H-HHHHHHHHH----------HCCCCEEEECTTSCCCCT--H-HHHHH----HHHCCC
T ss_pred cCceEEEEEeccc--cccH---H-HHHHHHHhh----------cCceEEEEeCCccccchH--H-HHHHH----HHhCCC
Confidence 5789999999987 3221 1 122222221 243 88999999985432 1 22222 122222
Q ss_pred --------------CcceEEEEecccCcC-hhhHHHHHHhh
Q 005972 369 --------------KLNGVYLVSARKDLG-VRNLLAFIKEL 394 (666)
Q Consensus 369 --------------~~~~V~~VSAkkg~G-veeLl~~I~~~ 394 (666)
.+..++++|+..|.| +..|++.+.+.
T Consensus 270 I~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 270 IIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 122345689999999 99999999865
No 396
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.56 E-value=0.0015 Score=70.08 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=61.0
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC--------------
Q 005972 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------- 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~-----p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------- 347 (666)
...+++.||+|+|+.+++-.. ..... ....++........ . .+.|+|||+||+||...
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~-es~~~~~~i~~~~~-~-~~~piILv~NK~DL~~~ki~~~~l~~~fp~y 297 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLT-ESLNIFETIVNNRV-F-SNVSIILFLNKTDLLEEKVQVVSIKDYFLEF 297 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHH-HHHHHHHHHHTCGG-G-TTSEEEEEEECHHHHHHHTTTCCGGGTCTTC
T ss_pred HhCCCCEEEEEEECccccccccccccccHHH-HHHHHHHHHhcchh-h-CCCCEEEEEEChhhhhhhccccchhhcCccc
Confidence 457899999999999853210 11111 12223332221111 1 34689999999999621
Q ss_pred ---CCChHHHHHHHHHHHHhCCC---CCcceEEEEecccCcChhhHHHHHHh
Q 005972 348 ---QVSPTRLDRWVRHRAKAGGA---PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 348 ---~~~~~~L~~wl~~~~k~~g~---~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.........|+...+..+.. .+.-.++.+||+++.|+++++..+.+
T Consensus 298 ~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 298 EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 13344556665444333211 11224788999999999999988765
No 397
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.56 E-value=0.00094 Score=79.22 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=64.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceeec----ccc------cCCCCceeEEEEEeeEe-----------------CCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK----LTE------APIPGTTLGILRIGGIL-----------------PAK 451 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~----~t~------S~~PGTT~~~~~~~~~l-----------------~~~ 451 (666)
.+|+|+|.+|+|||||+|+|+...+..... .+. ...+|.|.........+ +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 589999999999999999999764332110 000 11345443321111111 125
Q ss_pred eEEEECCCCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCccccc
Q 005972 452 AKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLH 528 (666)
Q Consensus 452 ~~liDTPGi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h 528 (666)
+.|+||||...... ......+..+...+.++..+.........+........++ +.+.||++..
T Consensus 100 i~liDTPG~~df~~----------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~---ilviNK~D~~ 163 (842)
T 1n0u_A 100 INLIDSPGHVDFSS----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP---VVVINKVDRA 163 (842)
T ss_dssp EEEECCCCCCSSCH----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE---EEEEECHHHH
T ss_pred EEEEECcCchhhHH----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe---EEEEECCCcc
Confidence 78999999875322 1223456778888888887665544332222222222333 3456777754
No 398
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.48 E-value=0.0013 Score=75.93 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=73.9
Q ss_pred CccEEEEeecCCChhhHHHhhhccccce--eecc----cccC------CCCceeEEEEEeeEe-CCceEEEECCCCCCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVK--VSKL----TEAP------IPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~--~~~~----t~S~------~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
+.+++++|.+|+|||||+++|++..... .+.+ +... ..|.|.......... .....|+||||.....
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 4579999999999999999998543220 0100 0111 124444332222112 2257899999975321
Q ss_pred cccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcC
Q 005972 465 LMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVG 544 (666)
Q Consensus 465 ~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g 544 (666)
..+....+..+...+.+++...+...-...+..+.....+++ .+.|+++.. ...++..+-+++.++
T Consensus 89 ----------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i---lv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 89 ----------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM---VVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp ----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE---EEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE---EEecCCchh-hhHHHHHHHHHHHhC
Confidence 123344566788888888766655443333333333334432 347888865 444444445555555
No 399
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=67.40 Aligned_cols=64 Identities=31% Similarity=0.378 Sum_probs=33.8
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeeccccc--CCCCcee-EEEEEe---eEeCCceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTL-GILRIG---GILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S--~~PGTT~-~~~~~~---~~l~~~~~liDTPGi~~~ 463 (666)
+++++|.+|+|||||+|.|++......+.+... ..+.+++ ..+.+. ..+....+++|+||+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 689999999999999999997653322211110 1223221 111111 012236799999999754
No 400
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.34 E-value=0.0029 Score=69.15 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.8
Q ss_pred ccEEEEeecCCChhhHHHhhhcccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~ 423 (666)
.+|++||.+|||||||+|+|++...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3679999999999999999997643
No 401
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.30 E-value=0.0019 Score=69.13 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=62.6
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC--------------
Q 005972 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------- 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~-----p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------- 347 (666)
...+++.||+|+|+.+++... ..... ....++......... .+.|+|||+||+||...
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~-e~~~~~~~i~~~~~~--~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~ 289 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMH-ESMKLFDSICNNKWF--TDTSIILFLNKKDLFEEKIKKSPLTICYPEY 289 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHH-HHHHHHHHHHTCGGG--TTSEEEEEEECHHHHHHHHTTSCGGGTCTTC
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHH-HHHHHHHHHHcCccc--cCCcEEEEEECcCchhhhccccchhhccccc
Confidence 457899999999999854200 01111 122333332211111 34689999999999621
Q ss_pred --CCChHHHHHHHHHHHHhCCC---CCcceEEEEecccCcChhhHHHHHHhh
Q 005972 348 --QVSPTRLDRWVRHRAKAGGA---PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 --~~~~~~L~~wl~~~~k~~g~---~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.........|+......+.. .+--.++.+||+++.|+++++..+.+.
T Consensus 290 ~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp CSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 12344566676554444321 012247889999999999999887653
No 402
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.14 E-value=0.0018 Score=71.08 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=36.6
Q ss_pred EEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcce
Q 005972 293 VVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNG 372 (666)
Q Consensus 293 vVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~ 372 (666)
+|++|+|+.+. ..+ .+..++..|. ...|+|+|+||+|.+++... ..+...++...+..|++
T Consensus 151 ~v~fI~d~~~~--l~~--~Dieilk~L~----------~~~~vI~Vi~KtD~Lt~~E~-~~l~~~I~~~L~~~gi~---- 211 (427)
T 2qag_B 151 CLYFIAPTGHS--LKS--LDLVTMKKLD----------SKVNIIPIIAKADAISKSEL-TKFKIKITSELVSNGVQ---- 211 (427)
T ss_dssp EEEEECCCC-----CH--HHHHHHHHTC----------SCSEEEEEESCGGGSCHHHH-HHHHHHHHHHHBTTBCC----
T ss_pred EEEEEeCCCCC--CCH--HHHHHHHHHh----------hCCCEEEEEcchhccchHHH-HHHHHHHHHHHHHcCCc----
Confidence 57888888763 222 2334444442 34689999999999975441 22222333222234543
Q ss_pred EEEEecc
Q 005972 373 VYLVSAR 379 (666)
Q Consensus 373 V~~VSAk 379 (666)
|+++|.-
T Consensus 212 I~~is~~ 218 (427)
T 2qag_B 212 IYQFPTD 218 (427)
T ss_dssp CCCCC--
T ss_pred EEecCCC
Confidence 7788853
No 403
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.12 E-value=0.0028 Score=66.72 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=57.4
Q ss_pred CcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcCC------------Ccc
Q 005972 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP------------RGN 400 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~~------------~~~ 400 (666)
.| .+|++|-|..++. +.+ .+++.+++ ++.++..+...+..|..+|...+.+ +..
T Consensus 81 ~P-~IIltrg~~~pee-----lie----~A~~~~IP----VL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~ 146 (314)
T 1ko7_A 81 TP-AIIVTRDLEPPEE-----LIE----AAKEHETP----LITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVG 146 (314)
T ss_dssp CC-CEEECTTCCCCHH-----HHH----HHHHTTCC----EEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEE
T ss_pred CC-EEEEeCCCCCCHH-----HHH----HHHHCCCe----EEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEE
Confidence 45 7789999987532 222 23456765 8888888899999999998775432 456
Q ss_pred EEEEeecCCChhhHHHhhhcc
Q 005972 401 VWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 401 v~vvG~~NVGKSTLiN~L~~~ 421 (666)
++++|.+|+||||+.+.|+.+
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHhc
Confidence 899999999999999999975
No 404
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.02 E-value=0.00014 Score=78.24 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCCCCCCccc
Q 005972 107 PVCPGCGIFMQDKDPNLPGYYKQ 129 (666)
Q Consensus 107 ~~c~gcg~~~q~~d~~~~g~~~~ 129 (666)
..|+|||+.+|++||+.|||--.
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~ 27 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPA 27 (368)
T ss_dssp -----------------------
T ss_pred ceeCCCcceeEcCCCCCCCCCCh
Confidence 46999999999999999999644
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.95 E-value=0.00067 Score=65.98 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred ccEEEEeecCCChhhHHHhhhcc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
..+.++|.+|||||||+|+|+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999999865
No 406
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.89 E-value=0.0043 Score=64.58 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.3
Q ss_pred ccEEEEeecCCChhhHHHhhhcc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+|+++|.+|||||||+|+|++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 407
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.84 E-value=0.0035 Score=76.19 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=49.2
Q ss_pred ccEEEEeecCCChhhHHHhhhccccc----------eeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCCccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGV----------KVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~----------~~~~~t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~ 467 (666)
.+|.++|.+|+|||||+|+|++.... ..........+|+|.+...+.... ...+.|+||||....
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF---- 372 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY---- 372 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH----
Confidence 57999999999999999999864110 011112224577777643322211 246899999996521
Q ss_pred ccCChhhHHHHHhhhhcCceeEEecCCCcccc
Q 005972 468 MRLNRDEQKMVEIRKELQPRTYRVKARQAVHV 499 (666)
Q Consensus 468 ~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~l 499 (666)
...+.......+...+.++.......
T Consensus 373 ------~~~mi~gas~AD~aILVVDAtdGv~~ 398 (1289)
T 3avx_A 373 ------VKNMITGAAQMDGAILVVAATDGPMP 398 (1289)
T ss_dssp ------HHHHHHTSCCCSEEEEEEETTTCSCT
T ss_pred ------HHHHHHHHhhCCEEEEEEcCCccCcH
Confidence 11233344566777777777654433
No 408
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.78 E-value=0.00032 Score=75.32 Aligned_cols=24 Identities=33% Similarity=0.683 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCCCCCCcccc
Q 005972 107 PVCPGCGIFMQDKDPNLPGYYKQK 130 (666)
Q Consensus 107 ~~c~gcg~~~q~~d~~~~g~~~~~ 130 (666)
..|+|||+.+|++||+.|||--..
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~ 28 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKS 28 (369)
T ss_dssp ------------------------
T ss_pred ceeCCCCceeecCCCCCCCCCChH
Confidence 469999999999999999996443
No 409
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.47 E-value=0.0042 Score=70.20 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=79.5
Q ss_pred CccEEEEeecCCChhhHHHhhhcccccee--ecc--------cc------cCCCCceeEEEEEeeEeC-CceEEEECCCC
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKV--SKL--------TE------APIPGTTLGILRIGGILP-AKAKLYDTPGL 460 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~~~--------t~------S~~PGTT~~~~~~~~~l~-~~~~liDTPGi 460 (666)
.++++|||....|||||.-+|+...+... +.+ ++ -...|.|.........+. ..+.||||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 36999999999999999999985443210 000 01 112333322111111233 36899999998
Q ss_pred CCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHH
Q 005972 461 LHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWK 540 (666)
Q Consensus 461 ~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~ 540 (666)
...... .....+-++.....+++..++..+=...+........+. +.+.||++-......++-+-.+
T Consensus 111 vDF~~E----------v~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~---i~fINK~Dr~~ad~~~~~~~i~ 177 (548)
T 3vqt_A 111 QDFSED----------TYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV---MTFVNKMDREALHPLDVMADIE 177 (548)
T ss_dssp GGCSHH----------HHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE---EEEEECTTSCCCCHHHHHHHHH
T ss_pred HHHHHH----------HHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCce---EEEEecccchhcchhHhhhhhh
Confidence 865541 234566778888999998888776555445444444443 3356888876666656655555
Q ss_pred hhcCC
Q 005972 541 NHVGI 545 (666)
Q Consensus 541 k~~g~ 545 (666)
..+|.
T Consensus 178 ~~l~~ 182 (548)
T 3vqt_A 178 QHLQI 182 (548)
T ss_dssp HHHTS
T ss_pred hhcCC
Confidence 55554
No 410
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.25 E-value=0.011 Score=66.02 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.5
Q ss_pred ccEEEEeecCCChhhHHHhhh
Q 005972 399 GNVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~ 419 (666)
..|+++|.+||||||++|.|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999998
No 411
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.11 E-value=0.051 Score=54.34 Aligned_cols=99 Identities=12% Similarity=-0.053 Sum_probs=56.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECC-CCCCCCCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKV-DLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKi-DLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..++|.||||||+.|..- .. ....+ ..|.+.......- ...|++|..||. |+ +.......+...+.- ..+
T Consensus 123 y~~TdglIfVVDSsD~~R-~e--ak~EL-~eL~~mL~ee~~L-~gapLLVlANKqqDl-p~Ams~~EI~e~L~L--~~l- 193 (227)
T 3l82_B 123 CEVVDGFIYVANAEAHKR-HE--WQDEF-SHIMAMTDPAFGS-SGRPLLVLSCISQGD-VKRMPCFYLAHELHL--NLL- 193 (227)
T ss_dssp HHHCSEEEEEEECBTTCC-CC--HHHHH-HHHHHHSCTTSSC-SCSCEEEEEEESSTT-SCBCCHHHHHHHTTG--GGG-
T ss_pred hcCCCEEEEEeccccHhH-HH--HHHHH-HHHHHHhcchhhh-CCCeEEEEeCCCcCc-cCCCCHHHHHHHcCC--cCC-
Confidence 356899999999998642 11 22222 1122211111100 235888888996 66 444443333332210 111
Q ss_pred CCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
.+.-.|..+||++|.|+.+=++.|.+.+.
T Consensus 194 -~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 194 -NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp -CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred -CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 13446999999999999999999876543
No 412
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.91 E-value=0.007 Score=58.88 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=38.5
Q ss_pred CcEEEEEECCCCCCCC-CChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhh
Q 005972 333 PKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 333 kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.|.++|+||+|+.+.. .....+..+++. ++. ...++.+||++|.|+++|++.|.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR----INP--DAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH----HCT--TSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH----hCC--CCeEEEEEecCCCCHHHHHHHHHHH
Confidence 3679999999997532 233334444432 221 2358999999999999999988754
No 413
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.69 E-value=0.014 Score=57.36 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=29.1
Q ss_pred CccEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEE
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI 441 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~ 441 (666)
+..++++|.+|+|||||+|.|++..... .....+.|||..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~----~~~~vs~TTR~p 58 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEK----FVYPVPYTTRPP 58 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTT----EECCCCEECSCC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCcc----EEeeecccccCC
Confidence 4467899999999999999999754211 113567788764
No 414
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.67 E-value=0.011 Score=64.30 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=18.7
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHH
Q 005972 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKK 234 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~slL-n~l~~~K~si~~rk~~ 234 (666)
.|+..++||+||+|||+| |+|.+.+. .++..++
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~ 54 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPF 54 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCc
Confidence 356678899999996654 99998875 4444443
No 415
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.66 E-value=0.013 Score=56.99 Aligned_cols=27 Identities=41% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+.+..++|+|.+|+|||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678899999999999999998643
No 416
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.62 E-value=0.038 Score=58.43 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=60.7
Q ss_pred cccccCEEEEEEecCCCCC-----CCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCC--------------
Q 005972 287 GNANAGVVVMVVDCVDFDG-----MFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------- 347 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~g-----s~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------- 347 (666)
...+++.||+|+|+.+++- +......+ ...++......... .+.|++|++||+||...
T Consensus 187 yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~e-s~~~~~~i~~~~~~--~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y 263 (327)
T 3ohm_A 187 CFENVTSIMFLVALSEYDQVLVESDNENRMEE-SKALFRTIITYPWF--QNSSVILFLNKKDLLEEKIMYSHLVDYFPEY 263 (327)
T ss_dssp GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHH-HHHHHHHHHTSGGG--TTCEEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred HhCCCCEEEEEEECccccccccccccHhHHHH-HHHHHHHHhhhhcc--CCceEEEEEECchhhhhhhccchHhhhchhc
Confidence 4568999999998873211 11111221 22333332221111 34689999999999642
Q ss_pred ---CCChHHHHHHHHHHHHhCCCC--CcceEEEEecccCcChhhHHHHHHh
Q 005972 348 ---QVSPTRLDRWVRHRAKAGGAP--KLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 348 ---~~~~~~L~~wl~~~~k~~g~~--~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
....+....|+...+...... +.-..+.+||+.+.|++.+...+.+
T Consensus 264 ~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 264 DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 123345566665554433211 1123678999999999999988865
No 417
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.59 E-value=0.0065 Score=60.59 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.8
Q ss_pred ccEEEEeecCCChhhHHHhhh
Q 005972 399 GNVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~ 419 (666)
..+.++|.+|||||||++.|.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 456789999999999999997
No 418
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.51 E-value=0.0079 Score=69.11 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=76.4
Q ss_pred ccEEEEeecCCChhhHHHhhhccccceee------cccccCC------CCceeEEEEEeeEe-CCceEEEECCCCCCCCc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS------KLTEAPI------PGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~~------~~t~S~~------PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
++|+|+|....|||||.-+|+...+.... ..++.+. .|.|.....+...+ +..+.||||||-.....
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47999999999999999999855432210 0111111 13333321111112 24678999999875443
Q ss_pred ccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHHHHhhcCC
Q 005972 466 MSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGI 545 (666)
Q Consensus 466 ~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~~~k~~g~ 545 (666)
......+-++.....+++..++..+-...+.......-+. +.+.||++-.......+-+-.+..++.
T Consensus 83 ----------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~---i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 83 ----------EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT---IFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp ----------HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC---EECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred ----------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe---EEEEeccccccCCHHHHHHHHHHHhCC
Confidence 1234456677778888887766655433333333323333 345788886655555555545555554
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.0073 Score=58.75 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred ccEEEEeecCCChhhHHHhhhcc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
..|.++|.+|||||||+|+|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999865
No 420
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.38 E-value=0.024 Score=60.13 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=34.5
Q ss_pred cEEEEeecCCChhhHHHhhhccccceeecccccCCCCceeEE--EEEeeEeCCceEEEECCCCCCC
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI--LRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~~~~~~~~t~S~~PGTT~~~--~~~~~~l~~~~~liDTPGi~~~ 463 (666)
+|.++|.+|||||||++.+.+..... . ....+.|.+. ..+. ..-.+.|.||||--+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~----~~~~~~Tig~~~~~v~--~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-D----TLYLESTSNPSLEHFS--TLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-G----GTTCCCCCSCCCEEEC--SSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-c----cceecCeeeeeeEEEc--cEEEEEEEECCCchhc
Confidence 47899999999999999887543211 0 0112223221 1121 1236899999997654
No 421
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.31 E-value=0.017 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||+|.|.+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345578899999999999999998743
No 422
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.22 E-value=0.021 Score=60.91 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=56.0
Q ss_pred cccccCEEEEEEecCCCCCC-----CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC------------
Q 005972 287 GNANAGVVVMVVDCVDFDGM-----FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV------------ 349 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs-----~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~------------ 349 (666)
...+++.+|+|+|+.+++-. ...... ....++........ . ...|+|||+||+||.....
T Consensus 203 y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~-~~~~~~~~i~~~~~-~-~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp 279 (354)
T 2xtz_A 203 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPC-F-EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFR 279 (354)
T ss_dssp GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH-HHHHHHHHHHTCGG-G-SSCEEEEEEECHHHHHHHTTTSCGGGSGGGT
T ss_pred HhCCCCEEEEEEECcccccccccccchhHHH-HHHHHHHHHHhccc-c-CCCeEEEEEECcchhhhhccccccccccccc
Confidence 45689999999999833211 011111 22233332211111 1 3468999999999853111
Q ss_pred ----------ChHHHHHHHHHHHHhC----CC----CCcceEEEEecccCcChhhHHHHHHh
Q 005972 350 ----------SPTRLDRWVRHRAKAG----GA----PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 350 ----------~~~~L~~wl~~~~k~~----g~----~~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
.......|++.....+ .. .+.-.++.+||+++.|+++++..+.+
T Consensus 280 ~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 280 DYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp TCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 0123344433321111 00 01123578999999999999988765
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.00 E-value=0.015 Score=63.67 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred ccEEEEeecCCChhhHHHhhhcc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
..|+++|.+||||||+++.|...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 424
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.96 E-value=0.016 Score=62.96 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC------------
Q 005972 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV------------ 349 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~-----p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~------------ 349 (666)
...+++.||+|+|+.+++-.. .... ..+..++....... .. ...|+|||+||+||.....
T Consensus 237 yf~~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~~~-~~-~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp 313 (402)
T 1azs_C 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWNNR-WL-RTISVILFLNKQDLLAEKVLAGKSKIEDYFP 313 (402)
T ss_dssp GTTTCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHTCT-TC-SSCCEEEEEECHHHHHHHHHHCSSCGGGTCG
T ss_pred hccCCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHhcc-cC-CCCeEEEEEEChhhhhhhhcccccchhhccc
Confidence 456899999999999842110 1111 12223333322110 01 3468999999999852110
Q ss_pred -------------------ChHHHHHHHHHHHHhC----CCC-CcceEEEEecccCcChhhHHHHHHhh
Q 005972 350 -------------------SPTRLDRWVRHRAKAG----GAP-KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 -------------------~~~~L~~wl~~~~k~~----g~~-~~~~V~~VSAkkg~GveeLl~~I~~~ 394 (666)
.......|++..+... +.. +.-.++.+||+++.||+.++..+.+.
T Consensus 314 ~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 314 EFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp GGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHH
Confidence 0123344543221111 000 01236789999999999999887653
No 425
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.79 E-value=0.023 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred CccEEEEeecCCChhhHHHhhhcc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+..++++|.+|+|||||+|.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999864
No 426
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=93.73 E-value=0.11 Score=54.98 Aligned_cols=99 Identities=18% Similarity=0.102 Sum_probs=53.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..+++.+++|+|+.+. . . .....+.+++.... ... ...|+++|+||+||.+............++..+++--
T Consensus 70 yr~a~~~IlV~Ditd~--~-~-~~~~~l~~~l~~~~---~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~ 141 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE--Y-I-NAITNLAMIIEYAY---KVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE 141 (331)
T ss_dssp HTTCSEEEEECCCSSC--T-T-HHHHHHHHHHHHHH---HHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCCEEEEEEECCch--H-H-HHHHHHHHHHHHHh---hcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh
Confidence 3578999999999984 2 1 22233323332211 001 3468999999999986432110011111111222211
Q ss_pred C---C-cceEEEEecccCcChhhHHHHHHhhc
Q 005972 368 P---K-LNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~---~-~~~V~~VSAkkg~GveeLl~~I~~~l 395 (666)
. . --..+.+||+. .++.+....|...+
T Consensus 142 ~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 142 LGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp SSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred hcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 0 0 11366789987 58988888876543
No 427
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.61 E-value=0.023 Score=66.02 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=73.6
Q ss_pred ccEEEEeecCCChhhHHHhhhcccccee--e----ccc------ccCCCCceeEEEEEeeEeC--------CceEEEECC
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--S----KLT------EAPIPGTTLGILRIGGILP--------AKAKLYDTP 458 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~~~~~--~----~~t------~S~~PGTT~~~~~~~~~l~--------~~~~liDTP 458 (666)
++|+|||....|||||.-+|+...+... + ..+ .-...|.|.....+...+. -.+.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 4899999999999999999985543210 0 001 1123444443222222232 147899999
Q ss_pred CCCCCCcccccCChhhHHHHHhhhhcCceeEEecCCCcccccceEEEeecccccceEEEEEecCCcccccccccccHHHH
Q 005972 459 GLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKARQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEI 538 (666)
Q Consensus 459 Gi~~~~~~~~~L~~~~~~~~~~~kel~~~~f~l~~~~~l~lggl~rld~l~~~~~~v~~~v~~s~~l~~h~tk~e~a~e~ 538 (666)
|-...... .....+-++.....+++-.++..+=...+.......-+. +.+.||++-........-+-
T Consensus 94 GHvDF~~E----------v~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~---i~~iNKiDr~~a~~~~~~~e 160 (709)
T 4fn5_A 94 GHVDFTIE----------VERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPR---IVYVNKMDRQGANFLRVVEQ 160 (709)
T ss_dssp SCTTCHHH----------HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE---EEEEECSSSTTCCHHHHHHH
T ss_pred CCcccHHH----------HHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCe---EEEEccccccCccHHHHHHH
Confidence 98765431 234566678888888887777665444444333323333 34568888655555544443
Q ss_pred HHhhcCC
Q 005972 539 WKNHVGI 545 (666)
Q Consensus 539 ~~k~~g~ 545 (666)
.+..++.
T Consensus 161 i~~~l~~ 167 (709)
T 4fn5_A 161 IKKRLGH 167 (709)
T ss_dssp HHHHHCS
T ss_pred hhhhccc
Confidence 4444543
No 428
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=93.61 E-value=0.05 Score=57.82 Aligned_cols=104 Identities=8% Similarity=0.088 Sum_probs=59.0
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCC-------------
Q 005972 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ------------- 348 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~-----p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~------------- 348 (666)
...+++.||+|+|+.+++-.. .....+ ...++........ . .+.|++|++||+||....
T Consensus 181 yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~e-s~~~~~~i~~~~~-~-~~~piiLv~NK~DL~~eki~~~~l~~~fp~y 257 (340)
T 4fid_A 181 FFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTE-SIAVFKDIMTNEF-L-KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEY 257 (340)
T ss_dssp TSCSCSEEEEEEEGGGTTCBCC--CCSBHHHH-HHHHHHHHHHCGG-G-TTSEEEEEEECHHHHHHHHHHSCGGGTCTTC
T ss_pred HhccCCEEEEEEECCccccccccccccchHHH-HHHHHHHHhhhhc-c-CCCeEEEEEECchhhhhhcCcchHHHhhhhh
Confidence 456899999999998542110 111111 1223333221111 1 346899999999986311
Q ss_pred ---CChHHHHHHHHHHH------HhCCCC-------------CcceEEEEecccCcChhhHHHHHHh
Q 005972 349 ---VSPTRLDRWVRHRA------KAGGAP-------------KLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 349 ---~~~~~L~~wl~~~~------k~~g~~-------------~~~~V~~VSAkkg~GveeLl~~I~~ 393 (666)
........|+.... ...... +.--.+.+||+...+++.++..+.+
T Consensus 258 ~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~ 324 (340)
T 4fid_A 258 TGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVD 324 (340)
T ss_dssp CCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHH
Confidence 12334556665544 211110 0123678999999999999888875
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.57 E-value=1.2 Score=48.92 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=42.0
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005972 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
...|.+++|+|+.. |. .... +...+.. ......+|+||+|...... .+... ....+.|
T Consensus 211 ~~pd~vlLVvDA~~--gq---~a~~-~a~~f~~---------~~~i~gVIlTKlD~~~~gG---~~ls~----~~~~g~P 268 (443)
T 3dm5_A 211 IHPHEVILVIDGTI--GQ---QAYN-QALAFKE---------ATPIGSIIVTKLDGSAKGG---GALSA----VAATGAP 268 (443)
T ss_dssp HCCSEEEEEEEGGG--GG---GHHH-HHHHHHH---------SCTTEEEEEECCSSCSSHH---HHHHH----HHTTCCC
T ss_pred hcCceEEEEEeCCC--ch---hHHH-HHHHHHh---------hCCCeEEEEECCCCccccc---HHHHH----HHHHCCC
Confidence 34689999999986 32 2121 2222322 2345679999999875421 12222 2345655
Q ss_pred CcceEEEEecccCcChhhHH
Q 005972 369 KLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 369 ~~~~V~~VSAkkg~GveeLl 388 (666)
|.+++. |.++++|.
T Consensus 269 ----I~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 269 ----IKFIGT--GEKIDDIE 282 (443)
T ss_dssp ----EEEEEC--SSSTTCEE
T ss_pred ----EEEEEc--CCChHHhh
Confidence 777875 88877654
No 430
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.33 E-value=0.034 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.4
Q ss_pred CccEEEEeecCCChhhHHHhhhccc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+..++++|.+|+|||||+|.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467899999999999999998753
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.27 E-value=0.04 Score=56.10 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.4
Q ss_pred ChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 383 GVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 383 GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
|+..+++.+. .+++..++++|.+|+|||||++.|++.
T Consensus 12 ~~~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 12 GLPDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SCCTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCHHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 3334555554 556778999999999999999999864
No 432
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.22 E-value=0.22 Score=52.03 Aligned_cols=96 Identities=13% Similarity=-0.065 Sum_probs=55.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEEC-CCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTK-VDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNK-iDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..++|.||||||+.|..-. . ..+.+. .|.......... ...|++|..|| -|+ +.......+.. .++
T Consensus 208 y~~tdglIfVVDSsDreRl-e--ak~EL~-eL~~mL~e~~~l-~~apLLVfANKkQDl-p~Ams~~EI~e-------~L~ 274 (312)
T 3l2o_B 208 CEVVDGFIYVANAEAHKRH-E--WQDEFS-HIMAMTDPAFGS-SGRPLLVLSCISQGD-VKRMPCFYLAH-------ELH 274 (312)
T ss_dssp HHHCSEEEECCBCBTTCCC-C--HHHHHH-HHHHHHCHHHHC-TTCCEEEEEEESSTT-SCBCCHHHHHH-------HTT
T ss_pred hcCCCEEEEEecCCcHhHH-H--HHHHHH-HHHHHhcchhhc-CCCeEEEEeCCcccc-cCCCCHHHHHH-------HcC
Confidence 3568999999999986532 2 222221 111111111100 23588888897 477 33333333332 222
Q ss_pred C---CCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 367 A---PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~---~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
+ .+.-.|..+||.+|.|+.+=++.|.+...
T Consensus 275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 2 12346999999999999999988876543
No 433
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.85 E-value=0.065 Score=58.50 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCCCCCcceEEEEecccCcChhhHHHHHHhhcC
Q 005972 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~GveeLl~~I~~~l~ 396 (666)
..++|+|+||+|++.+... ..+...+.......+++ ++.+||+++.+++++...|...+|
T Consensus 167 ~v~iIlVinK~Dll~~~ev-~~~k~~i~~~~~~~~i~----~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 167 KVNIIPLIAKADTLTPEEC-QQFKKQIMKEIQEHKIK----IYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp TSEEEEEEESTTSSCHHHH-HHHHHHHHHHHHHHTCC----CCCCC-----------------CC
T ss_pred cCcEEEEEEcccCccHHHH-HHHHHHHHHHHHHcCCe----EEeCCCCCCcCHHHHHHHHHhhCC
Confidence 4589999999999864321 11112222233344543 778999999999887777765543
No 434
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=92.83 E-value=0.043 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.2
Q ss_pred ccEEEEeec---------CCChhhHHHhhhcc
Q 005972 399 GNVWVIGAQ---------NAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~---------NVGKSTLiN~L~~~ 421 (666)
.+|+++|.+ |||||||+|+|++.
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 589999999 99999999999973
No 435
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.73 E-value=0.046 Score=54.23 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=22.9
Q ss_pred hcCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 394 LAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 394 ~l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.++++..++++|.+|+|||||++.|++..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35566778899999999999999998754
No 436
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.65 E-value=0.053 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.6
Q ss_pred CCccEEEEeecCCChhhHHHhhhcc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+..++++|.+|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999864
No 437
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.55 E-value=0.047 Score=52.84 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=30.0
Q ss_pred cChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 382 ~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.|+..|=..+..-.+++..+.++|.+|+|||||++.|++.
T Consensus 9 tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 9 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3666665555444555667889999999999999999863
No 438
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.51 E-value=0.052 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhcc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+..++++|.+|+|||||++.|++.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999999864
No 439
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.33 E-value=0.13 Score=56.69 Aligned_cols=20 Identities=40% Similarity=0.424 Sum_probs=17.6
Q ss_pred cEEEEeecCCChhhHHHhhh
Q 005972 400 NVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~ 419 (666)
.|.|+|.+++|||+|+|.|+
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 46689999999999999775
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.23 E-value=0.086 Score=55.15 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=29.2
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++-+.-..+++..++|+|.+|+|||||++.|++-.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3455555456777789999999999999999998653
No 441
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.21 E-value=0.063 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCccEEEEeecCCChhhHHHhhhcc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+..++++|.+|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456889999999999999999864
No 442
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.09 E-value=0.058 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
-|+|+|.+||||+||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998653
No 443
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.93 E-value=0.062 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.++++|.+|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 444
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.59 E-value=0.085 Score=56.17 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=27.1
Q ss_pred HHHHhhcCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 389 AFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 389 ~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+.+.-..+.+..++++|.+|+|||||+|+|++..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4444444567799999999999999999998743
No 445
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.52 E-value=0.05 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.4
Q ss_pred hcCCCccEEEEeecCCChhhHHHhhh
Q 005972 394 LAGPRGNVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 394 ~l~~~~~v~vvG~~NVGKSTLiN~L~ 419 (666)
-.+++..++++|.+|+|||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44556678899999999999999987
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.47 E-value=0.088 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445678899999999999999998754
No 447
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.43 E-value=0.1 Score=55.75 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCCccEEEEeecCCChhhHHHhhhcc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+++.++|+|.+|+|||||+++|++.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999999864
No 448
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.39 E-value=0.09 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
..+..++++|.+|+|||||++.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345678999999999999999998653
No 449
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.36 E-value=0.34 Score=49.43 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEECCCCCCCCC
Q 005972 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 287 al~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
.++.+.+.++++|...- |..+ .+..++..|.. . .++|+|+||+|.+....
T Consensus 108 ~iaRal~~lllldep~~-gL~~--lD~~~l~~L~~---------~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 108 PDTRVHCCLYFISPTGH-SLRP--LDLEFMKHLSK---------V-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp CCCSCCEEEEEECCCSS-SCCH--HHHHHHHHHHT---------T-SEEEEEETTGGGSCHHH
T ss_pred hhheeeeeeEEEecCCC-cCCH--HHHHHHHHHHh---------c-CcEEEEEeccccCCHHH
Confidence 34567888888985421 2223 34445555543 3 58999999999997644
No 450
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.20 E-value=0.086 Score=52.26 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578899999999999999998753
No 451
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.12 E-value=0.087 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.++++|.+|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998654
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.12 E-value=0.097 Score=55.12 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=28.3
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++.+.-..+.+..++++|.+|+|||||+|.|++..
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455554444456789999999999999999999753
No 453
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.11 E-value=0.1 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999998753
No 454
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.02 E-value=0.14 Score=49.42 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred hhHHHHHHhhc-CCCccEEEEeecCCChhhHHHhhhcc
Q 005972 385 RNLLAFIKELA-GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 385 eeLl~~I~~~l-~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+.|.+.|.... +.+..++++|.+|+|||||++.|.+.
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 23456889999999999999999753
No 455
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.99 E-value=0.1 Score=49.74 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.6
Q ss_pred CCccEEEEeecCCChhhHHHhhhcc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+..++++|.+|+|||||++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3557889999999999999999864
No 456
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.97 E-value=0.1 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhccc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+..++++|.+|+|||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34567899999999999999998654
No 457
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.82 E-value=0.1 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.0
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999998753
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.65 E-value=0.12 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999998753
No 459
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.38 E-value=0.13 Score=52.32 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456678899999999999999998753
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.38 E-value=0.23 Score=45.18 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.1
Q ss_pred hhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 384 veeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+..+.+.+.........|++.|.+|+|||++..++...
T Consensus 13 ~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 13 IQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45667777666666678999999999999999999764
No 461
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.38 E-value=0.11 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998753
No 462
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.33 E-value=0.13 Score=52.47 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 455678899999999999999998753
No 463
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.31 E-value=0.14 Score=49.03 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=29.7
Q ss_pred cChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhc
Q 005972 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 382 ~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~ 420 (666)
+|+..|=..+..-++.+..+.++|.+|+|||||++.|+.
T Consensus 4 tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 4 TGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455655555543456666788999999999999999986
No 464
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.29 E-value=0.12 Score=51.19 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998753
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.26 E-value=0.13 Score=52.58 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678899999999999999998753
No 466
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.24 E-value=0.12 Score=51.50 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578899999999999999998753
No 467
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.24 E-value=0.5 Score=51.64 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=46.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCC-CcEEEEEECCCCCCCCCChHHHHHHHHHHHHhCC
Q 005972 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKL-PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 l~~aDvVV~VVDa~Df~gs~p~~i~~~I~~~L~~~~~~~~~~~~~-kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.. |. +.. ..++.+.. .. +...+|+||+|...+.. .+..+ ....+
T Consensus 208 ~~~~d~vllVvda~~--g~---~~~----~~~~~~~~------~~~~i~gvVlnK~D~~~~~g---~~l~~----~~~~~ 265 (432)
T 2v3c_C 208 ITNPDEIILVIDGTI--GQ---QAG----IQAKAFKE------AVGEIGSIIVTKLDGSAKGG---GALSA----VAETK 265 (432)
T ss_dssp SSCCSEEEEEEEGGG--GG---GHH----HHHHHHHT------TSCSCEEEEEECSSSCSTTH---HHHHH----HHHSS
T ss_pred HhcCcceeEEeeccc--cH---HHH----HHHHHHhh------cccCCeEEEEeCCCCccchH---HHHHH----HHHHC
Confidence 346899999999975 21 211 11222110 22 33789999999864321 12222 23344
Q ss_pred CC--------------CcceEEEEecccCcC-hhhHHHHHHhhcC
Q 005972 367 AP--------------KLNGVYLVSARKDLG-VRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~--------------~~~~V~~VSAkkg~G-veeLl~~I~~~l~ 396 (666)
.+ .+....++|+..|.| +..|++.+.+..+
T Consensus 266 ~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 266 APIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp CCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred CCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33 122223556777777 7666666655433
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.23 E-value=0.13 Score=52.11 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=23.5
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++..++++|.+|+|||||++.|++-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456678899999999999999998753
No 469
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.20 E-value=0.11 Score=52.46 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578899999999999999998743
No 470
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.19 E-value=0.12 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.5
Q ss_pred CccEEEEeecCCChhhHHHhhhccc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+..++++|.+|+|||||++.|.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578899999999999999998643
No 471
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.16 E-value=0.11 Score=48.89 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.6
Q ss_pred CccEEEEeecCCChhhHHHhhhc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~ 420 (666)
+..++++|.+|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 44678999999999999998663
No 472
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.14 E-value=0.16 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred CccEEEEeecCCChhhHHHhhhcc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+..++++|.+|+|||||++.|++-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 557889999999999999999875
No 473
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.11 E-value=0.14 Score=52.27 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhcc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+++..++++|.+|+|||||++.|++-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567889999999999999999974
No 474
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.09 E-value=0.12 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CccEEEEeecCCChhhHHHhhhcc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+..++++|.+|+|||||++++++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999864
No 475
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.06 E-value=0.11 Score=48.14 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=26.1
Q ss_pred hHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+++..+... .+..++++|.+|+|||||++++.+.
T Consensus 26 ~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 26 ELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp HHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444 4567899999999999999999864
No 476
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.94 E-value=0.13 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred CccEEEEeecCCChhhHHHhhhcc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+..++++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999875
No 477
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.93 E-value=0.12 Score=49.79 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=28.2
Q ss_pred cChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 382 ~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+|+..|-..+..-++++..++++|.+|+|||||++.|+..
T Consensus 7 tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 7 TGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3555554444323445667889999999999999999843
No 478
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.86 E-value=0.13 Score=51.57 Aligned_cols=27 Identities=33% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578899999999999999998753
No 479
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.81 E-value=0.13 Score=52.51 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999998753
No 480
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.81 E-value=0.14 Score=47.42 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.1
Q ss_pred ccEEEEeecCCChhhHHHhhhccc
Q 005972 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
..++++|.+|+|||||.+.|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.79 E-value=0.15 Score=51.88 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.9
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445678899999999999999998753
No 482
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.78 E-value=0.13 Score=51.87 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCccEEEEeecCCChhhHHHhhhcc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
++..++++|.+|+|||||++.|++-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999974
No 483
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.77 E-value=0.2 Score=51.76 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=26.6
Q ss_pred hhHHHHHHhh----cCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 385 RNLLAFIKEL----AGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 385 eeLl~~I~~~----l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+.|.+.|..+ ...+..|+|+|.+|+|||||.+.|.+..
T Consensus 14 ~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 14 EFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555443 2234568899999999999999987643
No 484
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.76 E-value=0.13 Score=52.81 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345578899999999999999998743
No 485
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.75 E-value=0.26 Score=44.87 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=31.5
Q ss_pred hhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 384 veeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
+..+.+.+.........|++.|.+|+|||++..+|...
T Consensus 10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 56677777776677788999999999999999999753
No 486
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.74 E-value=0.14 Score=49.79 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=30.8
Q ss_pred cChhhHHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 382 ~GveeLl~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.|+..|=..+..-++.+..+.++|.+|+|||||+..|+..
T Consensus 8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4666665555455566677889999999999999999863
No 487
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.72 E-value=0.23 Score=45.63 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=26.7
Q ss_pred ChhhHHHHHHhhcC--CCccEEEEeecCCChhhHHHhhhcc
Q 005972 383 GVRNLLAFIKELAG--PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 383 GveeLl~~I~~~l~--~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
|.++.++.+...+. ....+++.|.+|+|||+|++.+...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33444444433332 2357899999999999999999864
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.64 E-value=0.14 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345578899999999999999998754
No 489
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.58 E-value=0.11 Score=54.40 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.9
Q ss_pred cCCCccEEEEeecCCChhhHHHhhhccc
Q 005972 395 AGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 395 l~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.+++..+++||.+|+|||||++.|++-.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3456789999999999999999998754
No 490
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.41 E-value=0.14 Score=49.05 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.9
Q ss_pred cEEEEeecCCChhhHHHhhhcc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.+.++|.+|+|||||+++|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999864
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.32 E-value=0.15 Score=52.47 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345578899999999999999998754
No 492
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.32 E-value=0.2 Score=56.07 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCccEEEEeecCCChhhHHHhhhcc
Q 005972 387 LLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 387 Ll~~I~~~l~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.++.+.-....+..++|+|.+|+|||||+|+|++.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33444333344667999999999999999999864
No 493
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.24 E-value=0.15 Score=51.54 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578899999999999999998753
No 494
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.24 E-value=0.14 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCCccEEEEeecCCChhhHHHhhhcc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~ 421 (666)
.++..++++|.+|+|||||++.|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45668999999999999999999864
No 495
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.15 E-value=0.15 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.0
Q ss_pred cEEEEeecCCChhhHHHhhhc
Q 005972 400 NVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~ 420 (666)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999999975
No 496
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.08 E-value=0.18 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred CccEEEEeecCCChhhHHHhhhc
Q 005972 398 RGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 398 ~~~v~vvG~~NVGKSTLiN~L~~ 420 (666)
+..++++|.+|+|||||++.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999984
No 497
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.98 E-value=0.23 Score=47.57 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.5
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
..+..++++|.+|+|||||.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998643
No 498
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.87 E-value=0.13 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=16.3
Q ss_pred CCccEEEEeecCCChhhHHHhhh-cc
Q 005972 397 PRGNVWVIGAQNAGKSTLINTFA-KK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NVGKSTLiN~L~-~~ 421 (666)
.+..++++|.+|+|||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34568899999999999999998 64
No 499
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.77 E-value=0.18 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred cEEEEeecCCChhhHHHhhhccc
Q 005972 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
.++++|.+|+|||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68899999999999999998753
No 500
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.75 E-value=0.2 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCccEEEEeecCCChhhHHHhhhccc
Q 005972 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NVGKSTLiN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999998754
Done!