Query 005973
Match_columns 666
No_of_seqs 421 out of 3868
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 16:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 2.3E-81 5E-86 658.3 36.1 399 263-666 4-403 (428)
2 KOG0458 Elongation factor 1 al 100.0 4.8E-76 1E-80 636.7 36.2 406 259-666 170-578 (603)
3 PLN00043 elongation factor 1-a 100.0 5.6E-72 1.2E-76 618.6 44.7 399 263-666 4-406 (447)
4 PTZ00141 elongation factor 1- 100.0 6E-71 1.3E-75 610.8 45.0 399 263-666 4-406 (446)
5 PRK12317 elongation factor 1-a 100.0 2.4E-68 5.1E-73 589.9 43.6 392 263-666 3-397 (425)
6 TIGR00483 EF-1_alpha translati 100.0 7.6E-68 1.6E-72 585.9 45.2 395 263-666 4-399 (426)
7 COG2895 CysN GTPases - Sulfate 100.0 1.5E-65 3.2E-70 525.2 33.6 386 263-666 3-390 (431)
8 TIGR02034 CysN sulfate adenyly 100.0 2.8E-64 6.1E-69 553.1 41.7 381 267-666 1-384 (406)
9 KOG0459 Polypeptide release fa 100.0 1.5E-65 3.2E-70 531.8 27.2 400 261-666 74-476 (501)
10 PRK05124 cysN sulfate adenylyl 100.0 9E-64 2E-68 557.4 43.5 386 263-666 24-412 (474)
11 PRK05506 bifunctional sulfate 100.0 2.3E-60 5E-65 549.3 43.5 384 264-666 22-408 (632)
12 CHL00071 tufA elongation facto 100.0 1.1E-56 2.3E-61 493.8 41.1 369 261-663 7-387 (409)
13 PLN03126 Elongation factor Tu; 100.0 8.5E-57 1.8E-61 499.7 40.0 367 262-662 77-455 (478)
14 PRK12735 elongation factor Tu; 100.0 1.2E-56 2.6E-61 491.5 40.5 358 261-663 7-374 (396)
15 PRK00049 elongation factor Tu; 100.0 5E-56 1.1E-60 486.3 42.0 358 261-663 7-374 (396)
16 PRK12736 elongation factor Tu; 100.0 4.6E-56 9.9E-61 486.5 40.3 356 261-663 7-372 (394)
17 TIGR00485 EF-Tu translation el 100.0 1.6E-55 3.5E-60 482.5 40.0 356 261-663 7-372 (394)
18 PLN03127 Elongation factor Tu; 100.0 6.1E-54 1.3E-58 474.5 40.1 355 261-663 56-425 (447)
19 COG0050 TufB GTPases - transla 100.0 1.1E-50 2.4E-55 406.4 28.6 356 260-662 6-371 (394)
20 KOG0460 Mitochondrial translat 100.0 2.6E-50 5.7E-55 410.3 22.5 354 262-662 50-415 (449)
21 PTZ00327 eukaryotic translatio 100.0 1.6E-48 3.5E-53 430.7 35.1 305 264-623 32-409 (460)
22 PRK04000 translation initiatio 100.0 5.7E-46 1.2E-50 408.4 36.1 307 262-623 5-371 (411)
23 PRK10512 selenocysteinyl-tRNA- 100.0 5.3E-46 1.1E-50 425.1 37.1 297 267-623 1-300 (614)
24 TIGR03680 eif2g_arch translati 100.0 7.2E-46 1.6E-50 407.6 34.9 305 264-623 2-366 (406)
25 TIGR00475 selB selenocysteine- 100.0 4.3E-44 9.3E-49 408.2 36.0 322 267-652 1-324 (581)
26 COG5258 GTPBP1 GTPase [General 100.0 4.6E-45 1E-49 376.7 24.3 386 216-662 68-506 (527)
27 COG3276 SelB Selenocysteine-sp 100.0 8.9E-44 1.9E-48 377.1 29.4 326 268-660 2-330 (447)
28 KOG0463 GTP-binding protein GP 100.0 1.3E-39 2.8E-44 334.7 17.8 353 245-656 111-519 (641)
29 TIGR01394 TypA_BipA GTP-bindin 100.0 1.9E-36 4.2E-41 344.9 29.4 279 267-582 2-291 (594)
30 COG5257 GCD11 Translation init 100.0 3.1E-36 6.7E-41 306.0 27.6 321 264-662 8-389 (415)
31 KOG1143 Predicted translation 100.0 7.9E-37 1.7E-41 314.2 20.8 380 218-656 114-555 (591)
32 COG1217 TypA Predicted membran 100.0 7.1E-35 1.5E-39 307.8 26.2 284 264-584 3-297 (603)
33 PRK10218 GTP-binding protein; 100.0 3E-34 6.5E-39 326.7 30.4 279 265-581 4-294 (607)
34 KOG0461 Selenocysteine-specifi 100.0 8.1E-35 1.8E-39 297.1 22.4 347 265-664 6-380 (522)
35 TIGR01393 lepA GTP-binding pro 100.0 3E-34 6.4E-39 327.7 28.8 267 265-581 2-279 (595)
36 PRK05433 GTP-binding protein L 100.0 3.5E-34 7.6E-39 327.4 27.7 267 265-581 6-283 (600)
37 cd01883 EF1_alpha Eukaryotic e 100.0 3.9E-34 8.5E-39 289.5 21.1 216 268-487 1-218 (219)
38 KOG0462 Elongation factor-type 100.0 3.2E-34 6.9E-39 308.3 20.9 265 265-579 59-332 (650)
39 COG0481 LepA Membrane GTPase L 100.0 1E-33 2.2E-38 300.0 22.9 268 264-581 7-285 (603)
40 KOG0052 Translation elongation 100.0 4.9E-35 1.1E-39 307.4 12.0 342 263-666 4-348 (391)
41 cd04166 CysN_ATPS CysN_ATPS su 100.0 2.1E-33 4.6E-38 281.9 21.4 207 268-487 1-207 (208)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 5.6E-31 1.2E-35 261.6 20.5 192 266-487 2-194 (195)
43 PRK07560 elongation factor EF- 100.0 1.4E-31 3.1E-36 313.8 18.5 349 264-641 18-438 (731)
44 PRK05306 infB translation init 100.0 3.3E-30 7.2E-35 299.5 29.0 248 263-578 287-543 (787)
45 TIGR00487 IF-2 translation ini 100.0 5.9E-30 1.3E-34 291.2 29.5 246 264-577 85-340 (587)
46 PRK00007 elongation factor G; 100.0 8.6E-31 1.9E-35 305.6 21.0 267 265-580 9-395 (693)
47 PRK12739 elongation factor G; 100.0 1.8E-30 3.9E-35 303.1 20.0 271 265-580 7-392 (691)
48 COG0480 FusA Translation elong 100.0 7E-30 1.5E-34 292.6 21.8 350 263-658 7-478 (697)
49 TIGR00484 EF-G translation elo 100.0 6.4E-30 1.4E-34 298.5 20.5 272 264-580 8-393 (689)
50 PRK00741 prfC peptide chain re 100.0 4.7E-29 1E-33 281.1 20.8 278 264-579 8-380 (526)
51 TIGR00503 prfC peptide chain r 100.0 4.2E-29 9.2E-34 281.5 20.3 275 264-579 9-381 (527)
52 CHL00189 infB translation init 100.0 3.5E-28 7.6E-33 280.3 26.4 249 263-578 241-501 (742)
53 PRK13351 elongation factor G; 100.0 5.4E-29 1.2E-33 291.2 19.5 271 265-580 7-391 (687)
54 KOG1145 Mitochondrial translat 100.0 2.3E-28 5.1E-33 262.9 21.5 252 263-578 150-407 (683)
55 TIGR00490 aEF-2 translation el 100.0 5.2E-29 1.1E-33 291.6 13.8 349 265-642 18-439 (720)
56 PRK12740 elongation factor G; 100.0 3.1E-28 6.7E-33 284.2 18.4 264 272-580 1-374 (668)
57 PRK04004 translation initiatio 100.0 4E-27 8.6E-32 268.6 26.7 255 263-575 3-325 (586)
58 PF00009 GTP_EFTU: Elongation 100.0 5.5E-28 1.2E-32 238.6 16.8 181 265-485 2-186 (188)
59 COG0532 InfB Translation initi 100.0 7.3E-27 1.6E-31 254.4 24.0 236 264-565 3-249 (509)
60 TIGR00491 aIF-2 translation in 100.0 1.3E-26 2.7E-31 263.6 26.6 254 265-576 3-324 (590)
61 KOG0465 Mitochondrial elongati 99.9 1.2E-27 2.6E-32 260.1 12.6 336 264-642 37-485 (721)
62 COG4108 PrfC Peptide chain rel 99.9 6.6E-27 1.4E-31 246.7 15.3 276 265-578 11-381 (528)
63 PLN00116 translation elongatio 99.9 8.1E-27 1.8E-31 276.9 17.1 369 263-659 16-562 (843)
64 PTZ00416 elongation factor 2; 99.9 5.5E-26 1.2E-30 269.4 17.8 368 264-659 17-555 (836)
65 KOG0466 Translation initiation 99.9 4.2E-26 9.2E-31 230.2 10.8 304 264-623 36-417 (466)
66 cd01885 EF2 EF2 (for archaea a 99.9 8.1E-24 1.8E-28 214.1 16.2 190 267-487 1-222 (222)
67 PRK14845 translation initiatio 99.9 2.3E-22 5E-27 238.6 24.6 224 327-577 491-782 (1049)
68 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-22 2.4E-27 203.5 17.1 167 267-487 1-201 (203)
69 cd01889 SelB_euk SelB subfamil 99.9 3.2E-22 6.9E-27 198.0 16.9 171 267-487 1-188 (192)
70 cd01891 TypA_BipA TypA (tyrosi 99.9 5E-22 1.1E-26 196.9 18.3 185 266-483 2-189 (194)
71 KOG0469 Elongation factor 2 [T 99.9 3.3E-23 7.3E-28 220.1 10.4 307 264-596 17-491 (842)
72 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.6E-22 5.7E-27 203.7 15.7 177 268-487 1-224 (224)
73 cd04171 SelB SelB subfamily. 99.9 2.2E-21 4.8E-26 184.8 18.2 154 268-461 2-156 (164)
74 cd01890 LepA LepA subfamily. 99.9 2.4E-21 5.1E-26 188.3 17.8 162 267-461 1-167 (179)
75 cd01886 EF-G Elongation factor 99.9 2.4E-21 5.1E-26 202.0 16.1 165 268-461 1-166 (270)
76 cd04167 Snu114p Snu114p subfam 99.9 5.8E-21 1.3E-25 192.3 17.2 172 267-459 1-191 (213)
77 cd04168 TetM_like Tet(M)-like 99.9 7.6E-21 1.6E-25 194.7 17.2 130 268-419 1-130 (237)
78 cd00881 GTP_translation_factor 99.8 4E-20 8.6E-25 180.3 17.8 168 268-461 1-177 (189)
79 COG1159 Era GTPase [General fu 99.8 3.5E-20 7.6E-25 189.9 15.2 180 264-505 4-198 (298)
80 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.6E-19 9.9E-24 169.9 17.1 151 267-461 1-156 (168)
81 cd04169 RF3 RF3 subfamily. Pe 99.8 4.3E-19 9.3E-24 184.8 17.5 150 266-436 2-151 (267)
82 KOG1144 Translation initiation 99.8 2.2E-19 4.8E-24 198.4 15.6 244 261-560 470-794 (1064)
83 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-19 3.5E-24 172.2 12.7 143 267-461 1-151 (156)
84 KOG0464 Elongation factor G [T 99.8 2.2E-20 4.8E-25 195.0 6.2 274 264-579 35-419 (753)
85 COG1160 Predicted GTPases [Gen 99.8 4E-19 8.8E-24 191.3 16.0 155 264-461 176-341 (444)
86 COG1160 Predicted GTPases [Gen 99.8 9.2E-19 2E-23 188.6 15.3 152 267-485 4-164 (444)
87 KOG0467 Translation elongation 99.8 4.9E-18 1.1E-22 189.4 21.3 173 264-460 7-206 (887)
88 cd04170 EF-G_bact Elongation f 99.8 3.1E-18 6.8E-23 178.6 15.8 130 268-419 1-130 (268)
89 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.4E-18 5.2E-23 165.1 13.6 155 268-461 1-159 (167)
90 cd01895 EngA2 EngA2 subfamily. 99.8 7.6E-18 1.6E-22 161.1 16.5 153 266-461 2-165 (174)
91 TIGR03594 GTPase_EngA ribosome 99.8 4.4E-18 9.6E-23 188.9 16.7 154 265-462 171-335 (429)
92 PRK15494 era GTPase Era; Provi 99.8 6.7E-18 1.4E-22 181.8 17.1 177 265-505 51-242 (339)
93 TIGR00436 era GTP-binding prot 99.8 9.9E-18 2.1E-22 175.1 16.6 145 268-461 2-154 (270)
94 PRK00093 GTP-binding protein D 99.8 1.2E-17 2.7E-22 185.8 18.2 153 265-462 172-335 (435)
95 TIGR03598 GTPase_YsxC ribosome 99.7 8E-17 1.7E-21 157.5 16.9 150 264-459 16-178 (179)
96 COG2262 HflX GTPases [General 99.7 5.2E-18 1.1E-22 180.3 8.9 184 223-461 152-346 (411)
97 cd01864 Rab19 Rab19 subfamily. 99.7 1E-16 2.2E-21 153.9 16.8 149 266-461 3-156 (165)
98 cd04154 Arl2 Arl2 subfamily. 99.7 4.4E-17 9.5E-22 158.1 14.2 154 264-461 12-165 (173)
99 cd01894 EngA1 EngA1 subfamily. 99.7 4.4E-17 9.5E-22 153.8 13.4 140 270-461 1-148 (157)
100 PRK03003 GTP-binding protein D 99.7 7.7E-17 1.7E-21 181.1 16.7 153 265-462 210-373 (472)
101 PRK00089 era GTPase Era; Revie 99.7 1.7E-16 3.7E-21 167.4 17.6 150 265-461 4-161 (292)
102 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 7.4E-17 1.6E-21 160.7 13.8 152 267-461 1-158 (201)
103 TIGR03594 GTPase_EngA ribosome 99.7 1.8E-16 3.8E-21 176.1 17.2 142 268-461 1-150 (429)
104 cd01861 Rab6 Rab6 subfamily. 99.7 4.6E-16 1E-20 148.1 17.5 147 267-461 1-152 (161)
105 KOG0468 U5 snRNP-specific prot 99.7 2.1E-16 4.6E-21 173.4 17.1 134 262-418 124-262 (971)
106 cd01898 Obg Obg subfamily. Th 99.7 2.3E-16 4.9E-21 151.7 15.3 146 268-461 2-161 (170)
107 cd04157 Arl6 Arl6 subfamily. 99.7 2.3E-16 5E-21 150.2 15.2 148 268-461 1-154 (162)
108 cd04124 RabL2 RabL2 subfamily. 99.7 3.5E-16 7.6E-21 150.1 16.3 144 267-461 1-148 (161)
109 cd04149 Arf6 Arf6 subfamily. 99.7 2.1E-16 4.6E-21 153.1 14.9 150 265-461 8-160 (168)
110 TIGR03156 GTP_HflX GTP-binding 99.7 3.5E-17 7.7E-22 176.7 10.4 179 226-461 152-342 (351)
111 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.3E-16 5E-21 150.5 14.8 151 266-461 2-154 (164)
112 cd01879 FeoB Ferrous iron tran 99.7 1.6E-16 3.4E-21 150.6 12.8 139 271-461 1-147 (158)
113 cd04106 Rab23_lke Rab23-like s 99.7 8E-16 1.7E-20 146.7 17.5 147 267-461 1-153 (162)
114 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.8E-16 8.3E-21 148.2 15.1 149 267-461 2-152 (162)
115 PRK03003 GTP-binding protein D 99.7 2.5E-16 5.5E-21 176.9 16.1 145 265-461 37-189 (472)
116 cd01897 NOG NOG1 is a nucleola 99.7 5.8E-16 1.3E-20 148.7 16.0 147 267-461 1-158 (168)
117 cd04151 Arl1 Arl1 subfamily. 99.7 2.9E-16 6.3E-21 149.8 13.6 147 268-461 1-150 (158)
118 cd04116 Rab9 Rab9 subfamily. 99.7 3.3E-16 7.1E-21 151.0 14.1 153 265-461 4-161 (170)
119 TIGR00231 small_GTP small GTP- 99.7 3.3E-16 7.2E-21 146.2 13.7 150 267-461 2-154 (161)
120 cd03693 EF1_alpha_II EF1_alpha 99.7 1.5E-16 3.2E-21 138.9 10.4 88 492-580 2-90 (91)
121 cd01878 HflX HflX subfamily. 99.7 8.1E-17 1.8E-21 160.6 9.9 145 264-461 39-195 (204)
122 cd04150 Arf1_5_like Arf1-Arf5- 99.7 5E-16 1.1E-20 149.0 15.1 147 267-461 1-151 (159)
123 cd01862 Rab7 Rab7 subfamily. 99.7 4E-16 8.7E-21 150.1 14.2 149 267-461 1-157 (172)
124 cd04113 Rab4 Rab4 subfamily. 99.7 6.9E-16 1.5E-20 147.2 15.7 150 267-461 1-152 (161)
125 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.2E-16 1.1E-20 146.2 14.5 137 267-461 2-147 (157)
126 COG0218 Predicted GTPase [Gene 99.7 7.7E-16 1.7E-20 150.4 16.0 151 265-461 23-187 (200)
127 smart00175 RAB Rab subfamily o 99.7 1.5E-15 3.3E-20 144.7 17.6 147 267-461 1-152 (164)
128 PRK04213 GTP-binding protein; 99.7 6.9E-16 1.5E-20 153.4 15.8 153 265-461 8-182 (201)
129 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.5E-15 3.3E-20 145.8 17.5 148 266-461 2-154 (166)
130 cd04119 RJL RJL (RabJ-Like) su 99.7 9.3E-16 2E-20 146.4 15.9 151 267-461 1-157 (168)
131 cd01860 Rab5_related Rab5-rela 99.7 1.3E-15 2.7E-20 145.4 16.7 149 267-461 2-153 (163)
132 cd04120 Rab12 Rab12 subfamily. 99.7 9.2E-16 2E-20 153.5 16.1 149 267-462 1-154 (202)
133 cd01867 Rab8_Rab10_Rab13_like 99.7 1.1E-15 2.3E-20 147.4 15.9 148 266-461 3-155 (167)
134 smart00173 RAS Ras subfamily o 99.7 6E-16 1.3E-20 148.0 14.0 151 267-461 1-152 (164)
135 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.4E-16 1.2E-20 150.9 13.8 149 266-461 15-166 (174)
136 cd04127 Rab27A Rab27a subfamil 99.7 7.5E-16 1.6E-20 149.9 14.8 149 265-461 3-167 (180)
137 PLN00223 ADP-ribosylation fact 99.7 1.3E-15 2.9E-20 149.5 16.6 149 265-461 16-168 (181)
138 cd01868 Rab11_like Rab11-like. 99.7 1.2E-15 2.7E-20 146.1 15.9 148 266-461 3-155 (165)
139 cd04136 Rap_like Rap-like subf 99.7 7E-16 1.5E-20 147.0 13.9 146 267-461 2-153 (163)
140 cd04163 Era Era subfamily. Er 99.7 2.3E-15 5E-20 142.4 17.3 150 265-461 2-159 (168)
141 cd04122 Rab14 Rab14 subfamily. 99.7 7.9E-16 1.7E-20 148.0 14.2 149 267-461 3-154 (166)
142 PRK09518 bifunctional cytidyla 99.7 7.5E-16 1.6E-20 181.1 16.8 152 265-461 449-611 (712)
143 cd04175 Rap1 Rap1 subgroup. T 99.7 6.1E-16 1.3E-20 148.2 13.2 150 267-461 2-153 (164)
144 cd01865 Rab3 Rab3 subfamily. 99.7 1.3E-15 2.8E-20 146.5 15.4 149 267-461 2-153 (165)
145 cd00154 Rab Rab family. Rab G 99.7 2.8E-15 6.1E-20 140.7 17.3 147 267-461 1-152 (159)
146 KOG0092 GTPase Rab5/YPT51 and 99.7 8.3E-16 1.8E-20 147.7 13.7 151 264-461 3-157 (200)
147 PRK00093 GTP-binding protein D 99.7 7.3E-16 1.6E-20 171.6 15.4 143 267-461 2-152 (435)
148 cd01866 Rab2 Rab2 subfamily. 99.7 2.1E-15 4.6E-20 145.5 16.7 150 266-461 4-156 (168)
149 PRK11058 GTPase HflX; Provisio 99.7 9.6E-17 2.1E-21 177.2 8.3 186 224-461 158-352 (426)
150 cd04109 Rab28 Rab28 subfamily. 99.7 1.8E-15 4E-20 152.5 16.6 148 267-461 1-156 (215)
151 cd01863 Rab18 Rab18 subfamily. 99.7 1.3E-15 2.8E-20 145.3 14.5 148 267-461 1-152 (161)
152 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7.9E-16 1.7E-20 146.5 12.9 149 268-461 1-152 (160)
153 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.6E-16 1.9E-20 146.1 13.1 146 268-461 1-150 (158)
154 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 2.7E-15 5.9E-20 145.6 16.8 149 268-461 2-155 (170)
155 cd04121 Rab40 Rab40 subfamily. 99.7 1.5E-15 3.3E-20 150.4 14.8 149 265-461 5-157 (189)
156 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.2E-15 2.6E-20 149.8 14.0 156 266-461 3-160 (183)
157 smart00177 ARF ARF-like small 99.7 1.9E-15 4.2E-20 147.3 15.2 149 265-461 12-164 (175)
158 cd04158 ARD1 ARD1 subfamily. 99.7 1.4E-15 3.1E-20 147.1 14.0 147 268-461 1-151 (169)
159 cd04110 Rab35 Rab35 subfamily. 99.6 3.7E-15 7.9E-20 148.5 16.9 149 265-461 5-157 (199)
160 cd04114 Rab30 Rab30 subfamily. 99.6 3.8E-15 8.3E-20 143.1 16.5 152 265-461 6-159 (169)
161 cd00879 Sar1 Sar1 subfamily. 99.6 1.3E-15 2.7E-20 149.9 13.4 153 265-461 18-181 (190)
162 cd04118 Rab24 Rab24 subfamily. 99.6 3.8E-15 8.2E-20 147.0 16.8 152 267-461 1-156 (193)
163 TIGR02528 EutP ethanolamine ut 99.6 7.9E-16 1.7E-20 144.0 11.2 130 268-461 2-135 (142)
164 cd04112 Rab26 Rab26 subfamily. 99.6 2.2E-15 4.7E-20 149.0 14.8 148 267-461 1-153 (191)
165 PTZ00369 Ras-like protein; Pro 99.6 2E-15 4.4E-20 149.0 14.5 153 264-461 3-157 (189)
166 cd04142 RRP22 RRP22 subfamily. 99.6 3E-15 6.6E-20 149.3 15.7 148 267-461 1-164 (198)
167 cd04140 ARHI_like ARHI subfami 99.6 4.6E-15 9.9E-20 142.7 16.5 148 267-461 2-155 (165)
168 cd04159 Arl10_like Arl10-like 99.6 3.5E-15 7.7E-20 140.3 15.4 146 269-461 2-151 (159)
169 cd01893 Miro1 Miro1 subfamily. 99.6 3.9E-15 8.5E-20 143.4 15.8 152 267-461 1-154 (166)
170 PRK09518 bifunctional cytidyla 99.6 2.2E-15 4.7E-20 177.2 16.8 145 265-461 274-426 (712)
171 COG0486 ThdF Predicted GTPase 99.6 1.4E-15 3E-20 164.6 13.8 144 264-461 215-366 (454)
172 PLN03118 Rab family protein; P 99.6 4.2E-15 9.1E-20 149.3 16.4 151 264-461 12-167 (211)
173 PRK00454 engB GTP-binding prot 99.6 5.4E-15 1.2E-19 145.9 16.9 149 265-461 23-184 (196)
174 TIGR02729 Obg_CgtA Obg family 99.6 2.1E-15 4.6E-20 161.5 15.0 156 264-461 155-319 (329)
175 cd01874 Cdc42 Cdc42 subfamily. 99.6 3.1E-15 6.8E-20 146.0 14.8 151 267-461 2-165 (175)
176 PRK12299 obgE GTPase CgtA; Rev 99.6 3E-15 6.5E-20 160.6 15.9 150 264-461 156-318 (335)
177 cd04155 Arl3 Arl3 subfamily. 99.6 3.4E-15 7.3E-20 144.2 14.6 154 264-461 12-165 (173)
178 cd04132 Rho4_like Rho4-like su 99.6 4.7E-15 1E-19 145.5 15.8 153 267-461 1-157 (187)
179 cd04176 Rap2 Rap2 subgroup. T 99.6 2.8E-15 6.1E-20 143.3 13.8 147 267-461 2-153 (163)
180 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5.8E-15 1.3E-19 142.8 16.0 148 266-461 2-159 (170)
181 cd03698 eRF3_II_like eRF3_II_l 99.6 1.3E-15 2.7E-20 130.7 10.0 83 494-577 1-83 (83)
182 PRK15467 ethanolamine utilizat 99.6 1.4E-15 3E-20 146.2 11.5 131 268-461 3-137 (158)
183 PRK09554 feoB ferrous iron tra 99.6 3.6E-15 7.8E-20 175.2 17.2 145 265-461 2-158 (772)
184 PLN03110 Rab GTPase; Provision 99.6 1.2E-14 2.6E-19 146.8 18.8 150 264-461 10-164 (216)
185 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 3E-15 6.5E-20 145.6 13.8 148 266-461 2-154 (172)
186 smart00178 SAR Sar1p-like memb 99.6 4.1E-15 8.8E-20 146.3 14.7 153 265-461 16-175 (184)
187 cd04139 RalA_RalB RalA/RalB su 99.6 4.5E-15 9.8E-20 141.2 14.5 150 267-461 1-152 (164)
188 PTZ00133 ADP-ribosylation fact 99.6 5.2E-15 1.1E-19 145.4 15.3 150 265-461 16-168 (182)
189 cd04147 Ras_dva Ras-dva subfam 99.6 3.3E-15 7.1E-20 148.6 14.1 151 268-461 1-153 (198)
190 PRK12296 obgE GTPase CgtA; Rev 99.6 3.6E-15 7.8E-20 166.1 15.8 156 264-461 157-330 (500)
191 cd00877 Ran Ran (Ras-related n 99.6 2.8E-15 6.2E-20 144.8 13.0 145 267-461 1-149 (166)
192 PRK05291 trmE tRNA modificatio 99.6 2.4E-15 5.2E-20 167.7 14.3 139 265-461 214-360 (449)
193 cd00157 Rho Rho (Ras homology) 99.6 4.8E-15 1E-19 142.4 14.2 152 267-461 1-163 (171)
194 cd04101 RabL4 RabL4 (Rab-like4 99.6 6.3E-15 1.4E-19 140.9 14.8 149 267-461 1-154 (164)
195 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.4E-14 3.1E-19 142.4 17.7 151 267-461 1-156 (182)
196 cd04135 Tc10 TC10 subfamily. 99.6 3.3E-15 7.1E-20 144.4 12.9 152 267-461 1-164 (174)
197 cd04126 Rab20 Rab20 subfamily. 99.6 4E-15 8.6E-20 150.8 14.0 154 267-461 1-180 (220)
198 cd01875 RhoG RhoG subfamily. 99.6 5.2E-15 1.1E-19 146.5 14.3 154 265-461 2-167 (191)
199 PRK12298 obgE GTPase CgtA; Rev 99.6 3.9E-15 8.5E-20 162.7 14.6 153 265-461 158-323 (390)
200 cd04144 Ras2 Ras2 subfamily. 99.6 8E-15 1.7E-19 144.8 15.4 146 268-461 1-153 (190)
201 cd01892 Miro2 Miro2 subfamily. 99.6 6.5E-15 1.4E-19 142.8 14.1 152 264-461 2-156 (169)
202 cd04177 RSR1 RSR1 subgroup. R 99.6 8E-15 1.7E-19 141.4 14.5 151 267-461 2-154 (168)
203 cd01871 Rac1_like Rac1-like su 99.6 8.6E-15 1.9E-19 142.7 14.8 153 266-461 1-165 (174)
204 cd04123 Rab21 Rab21 subfamily. 99.6 1.3E-14 2.7E-19 137.7 15.5 147 267-461 1-152 (162)
205 cd04111 Rab39 Rab39 subfamily. 99.6 6.4E-15 1.4E-19 148.3 14.1 149 266-461 2-156 (211)
206 cd04143 Rhes_like Rhes_like su 99.6 2.1E-14 4.6E-19 148.0 17.8 150 267-461 1-161 (247)
207 cd04089 eRF3_II eRF3_II: domai 99.6 3.5E-15 7.6E-20 127.6 9.9 82 494-577 1-82 (82)
208 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 7.5E-15 1.6E-19 141.6 13.3 145 269-461 2-156 (164)
209 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 2E-14 4.3E-19 138.3 15.7 163 263-486 19-185 (221)
210 KOG0084 GTPase Rab1/YPT1, smal 99.6 9.1E-15 2E-19 141.1 13.4 153 264-461 7-162 (205)
211 cd04117 Rab15 Rab15 subfamily. 99.6 1.9E-14 4E-19 138.2 15.1 147 267-461 1-152 (161)
212 PRK12297 obgE GTPase CgtA; Rev 99.6 1.1E-14 2.3E-19 160.4 15.0 148 265-461 157-317 (424)
213 PLN03071 GTP-binding nuclear p 99.6 1.3E-14 2.8E-19 147.0 14.4 148 264-461 11-162 (219)
214 cd04161 Arl2l1_Arl13_like Arl2 99.6 8.3E-15 1.8E-19 141.7 12.3 147 268-461 1-159 (167)
215 cd00876 Ras Ras family. The R 99.6 1.2E-14 2.6E-19 137.5 13.2 145 268-461 1-151 (160)
216 cd04133 Rop_like Rop subfamily 99.6 1.1E-14 2.3E-19 142.7 13.0 153 267-461 2-163 (176)
217 smart00174 RHO Rho (Ras homolo 99.6 1.6E-14 3.4E-19 139.7 13.8 150 269-461 1-162 (174)
218 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.8E-14 6.1E-19 145.6 16.2 155 265-461 12-178 (232)
219 cd03694 GTPBP_II Domain II of 99.6 6E-15 1.3E-19 127.6 9.4 82 495-577 1-87 (87)
220 cd04137 RheB Rheb (Ras Homolog 99.6 1.9E-14 4.1E-19 140.2 14.0 150 267-461 2-153 (180)
221 cd04125 RabA_like RabA-like su 99.6 2.7E-14 5.9E-19 140.5 15.2 147 267-461 1-152 (188)
222 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 2.8E-14 6.1E-19 140.4 15.2 155 265-461 4-170 (182)
223 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.3E-14 5E-19 159.2 16.2 141 265-461 202-350 (442)
224 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2E-14 4.4E-19 139.4 13.8 152 267-461 1-164 (173)
225 PLN03108 Rab family protein; P 99.6 4.1E-14 8.8E-19 142.3 16.3 150 266-461 6-158 (210)
226 cd04134 Rho3 Rho3 subfamily. 99.6 2.2E-14 4.7E-19 141.7 14.0 153 267-461 1-164 (189)
227 cd04131 Rnd Rnd subfamily. Th 99.6 3.1E-14 6.7E-19 139.6 14.7 153 267-461 2-166 (178)
228 cd01881 Obg_like The Obg-like 99.6 2.9E-14 6.3E-19 137.5 13.9 149 271-461 1-167 (176)
229 KOG0078 GTP-binding protein SE 99.6 2.1E-14 4.5E-19 140.5 12.3 154 263-461 9-164 (207)
230 cd00880 Era_like Era (E. coli 99.6 4.2E-14 9.2E-19 131.9 13.9 146 271-461 1-154 (163)
231 cd04146 RERG_RasL11_like RERG/ 99.6 3.3E-14 7.2E-19 136.5 13.4 146 268-461 1-154 (165)
232 COG2229 Predicted GTPase [Gene 99.6 8.5E-14 1.8E-18 133.4 15.6 160 263-461 7-168 (187)
233 cd01870 RhoA_like RhoA-like su 99.6 5.3E-14 1.1E-18 136.1 14.4 152 267-461 2-165 (175)
234 cd03697 EFTU_II EFTU_II: Elong 99.6 1E-14 2.2E-19 126.2 8.4 84 495-579 1-87 (87)
235 KOG1423 Ras-like GTPase ERA [C 99.6 4E-14 8.6E-19 144.7 13.8 124 257-419 63-199 (379)
236 PF00025 Arf: ADP-ribosylation 99.6 4.6E-14 1E-18 137.9 13.8 150 264-461 12-166 (175)
237 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.8E-13 6.2E-18 137.8 19.8 167 263-487 36-202 (225)
238 cd01876 YihA_EngB The YihA (En 99.5 1.5E-13 3.2E-18 130.5 16.4 147 269-461 2-161 (170)
239 KOG0394 Ras-related GTPase [Ge 99.5 1.2E-14 2.7E-19 138.4 8.6 158 263-461 6-168 (210)
240 COG0370 FeoB Fe2+ transport sy 99.5 9.4E-14 2E-18 156.2 15.6 145 265-461 2-154 (653)
241 PF10662 PduV-EutP: Ethanolami 99.5 4.5E-14 9.7E-19 132.3 10.7 131 267-461 2-136 (143)
242 cd03696 selB_II selB_II: this 99.5 4.1E-14 8.8E-19 121.3 9.6 82 495-577 1-83 (83)
243 KOG0098 GTPase Rab2, small G p 99.5 5.1E-14 1.1E-18 134.4 11.0 149 266-461 6-158 (216)
244 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 2E-13 4.2E-18 138.6 15.4 152 267-461 2-166 (222)
245 cd04148 RGK RGK subfamily. Th 99.5 9.2E-14 2E-18 141.0 13.0 148 267-461 1-153 (221)
246 cd03695 CysN_NodQ_II CysN_NodQ 99.5 9.4E-14 2E-18 118.5 10.3 80 495-577 1-81 (81)
247 cd03704 eRF3c_III This family 99.5 6.1E-14 1.3E-18 126.3 9.4 83 584-666 2-85 (108)
248 smart00176 RAN Ran (Ras-relate 99.5 1.3E-13 2.9E-18 137.7 12.7 140 272-461 1-144 (200)
249 TIGR00437 feoB ferrous iron tr 99.5 1.6E-13 3.5E-18 157.6 14.6 137 273-461 1-145 (591)
250 PF01926 MMR_HSR1: 50S ribosom 99.5 2.3E-13 4.9E-18 123.5 12.3 107 268-414 1-116 (116)
251 cd04093 HBS1_C HBS1_C: this fa 99.5 1.8E-13 4E-18 122.8 11.3 83 584-666 2-84 (107)
252 cd01896 DRG The developmentall 99.5 4.3E-13 9.4E-18 137.2 15.5 82 268-380 2-90 (233)
253 KOG1489 Predicted GTP-binding 99.5 2E-13 4.3E-18 140.4 12.8 156 264-461 194-357 (366)
254 cd04103 Centaurin_gamma Centau 99.5 2.4E-13 5.2E-18 130.6 12.7 145 267-461 1-149 (158)
255 KOG0080 GTPase Rab18, small G 99.5 8.2E-14 1.8E-18 129.7 8.9 154 264-461 9-164 (209)
256 PF00071 Ras: Ras family; Int 99.5 2.6E-13 5.6E-18 129.5 12.1 149 268-461 1-151 (162)
257 cd00882 Ras_like_GTPase Ras-li 99.5 4.5E-13 9.7E-18 123.2 13.0 144 271-461 1-150 (157)
258 cd04129 Rho2 Rho2 subfamily. 99.5 5.6E-13 1.2E-17 131.3 13.5 152 267-461 2-163 (187)
259 cd03705 EF1_alpha_III Domain I 99.5 2.2E-13 4.8E-18 121.7 9.6 82 585-666 3-84 (104)
260 PRK09866 hypothetical protein; 99.5 3.5E-13 7.5E-18 151.0 13.2 108 343-461 229-343 (741)
261 cd01873 RhoBTB RhoBTB subfamil 99.5 5.4E-13 1.2E-17 132.8 12.6 107 341-461 63-186 (195)
262 KOG0087 GTPase Rab11/YPT3, sma 99.4 1.4E-13 3E-18 134.2 7.7 152 263-462 11-167 (222)
263 KOG0073 GTP-binding ADP-ribosy 99.4 1.2E-12 2.6E-17 122.7 13.3 148 265-461 15-168 (185)
264 KOG0086 GTPase Rab4, small G p 99.4 7.6E-13 1.6E-17 122.2 11.2 151 266-461 9-161 (214)
265 cd04104 p47_IIGP_like p47 (47- 99.4 2E-12 4.4E-17 128.8 14.5 153 266-459 1-172 (197)
266 cd04105 SR_beta Signal recogni 99.4 2.8E-12 6E-17 128.5 15.0 114 267-419 1-123 (203)
267 KOG0095 GTPase Rab30, small G 99.4 1.3E-12 2.8E-17 120.2 10.7 151 264-461 5-159 (213)
268 PTZ00132 GTP-binding nuclear p 99.4 6.5E-12 1.4E-16 126.5 16.4 149 263-461 6-158 (215)
269 COG1084 Predicted GTPase [Gene 99.4 3.6E-12 7.8E-17 132.3 14.3 156 260-461 162-326 (346)
270 cd04102 RabL3 RabL3 (Rab-like3 99.4 3.6E-12 7.7E-17 127.6 13.8 155 267-461 1-180 (202)
271 KOG1191 Mitochondrial GTPase [ 99.4 9.4E-13 2E-17 142.4 10.1 155 263-461 265-440 (531)
272 PF03143 GTP_EFTU_D3: Elongati 99.4 1.9E-12 4.1E-17 114.8 9.0 79 581-664 1-79 (99)
273 cd04095 CysN_NoDQ_III TCysN_No 99.4 2.8E-12 6E-17 114.5 10.1 80 584-666 2-81 (103)
274 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 6.2E-12 1.3E-16 125.0 13.4 134 267-440 1-153 (196)
275 KOG0093 GTPase Rab3, small G p 99.4 1.7E-12 3.6E-17 119.4 8.4 153 266-461 21-173 (193)
276 PLN00023 GTP-binding protein; 99.3 2.5E-11 5.4E-16 128.3 15.7 144 262-442 17-190 (334)
277 KOG0079 GTP-binding protein H- 99.3 4.5E-12 9.7E-17 116.7 8.5 148 266-461 8-159 (198)
278 COG0536 Obg Predicted GTPase [ 99.3 1E-11 2.3E-16 129.4 12.1 156 266-461 159-323 (369)
279 KOG1532 GTPase XAB1, interacts 99.3 7.7E-12 1.7E-16 126.3 9.3 193 264-461 17-254 (366)
280 KOG0097 GTPase Rab14, small G 99.3 3.9E-11 8.4E-16 109.5 12.4 146 265-461 10-163 (215)
281 KOG0410 Predicted GTP binding 99.3 2.4E-12 5.3E-17 132.5 4.7 168 233-461 149-331 (410)
282 COG1100 GTPase SAR1 and relate 99.3 9.7E-11 2.1E-15 117.6 16.3 155 266-461 5-175 (219)
283 cd01850 CDC_Septin CDC/Septin. 99.3 9.5E-11 2.1E-15 122.9 16.3 143 266-440 4-176 (276)
284 PF08477 Miro: Miro-like prote 99.3 1.2E-11 2.6E-16 112.0 8.3 114 268-416 1-119 (119)
285 COG3596 Predicted GTPase [Gene 99.3 2.5E-11 5.5E-16 123.5 11.3 154 263-461 36-212 (296)
286 KOG0091 GTPase Rab39, small G 99.2 2.4E-11 5.2E-16 113.7 9.0 151 266-462 8-164 (213)
287 COG1163 DRG Predicted GTPase [ 99.2 5.8E-11 1.3E-15 123.0 12.1 87 264-381 61-154 (365)
288 cd01513 Translation_factor_III 99.2 5.9E-11 1.3E-15 105.3 10.3 80 585-666 3-82 (102)
289 PF09439 SRPRB: Signal recogni 99.2 8.8E-11 1.9E-15 114.8 10.1 111 266-419 3-126 (181)
290 cd01899 Ygr210 Ygr210 subfamil 99.2 5.5E-10 1.2E-14 119.2 16.0 37 343-379 68-111 (318)
291 COG5192 BMS1 GTP-binding prote 99.2 1.1E-09 2.4E-14 119.2 18.2 235 252-549 55-306 (1077)
292 PF03029 ATP_bind_1: Conserved 99.1 2E-10 4.3E-15 117.8 11.3 171 271-461 1-227 (238)
293 KOG0395 Ras-related GTPase [Ge 99.1 2.3E-10 4.9E-15 114.0 11.3 152 265-461 2-155 (196)
294 KOG0076 GTP-binding ADP-ribosy 99.1 1.2E-10 2.7E-15 110.3 8.8 163 264-461 15-177 (197)
295 KOG0088 GTPase Rab21, small G 99.1 1.2E-10 2.6E-15 108.5 8.2 154 264-461 11-165 (218)
296 KOG0075 GTP-binding ADP-ribosy 99.1 2.3E-10 5E-15 105.5 9.8 149 267-461 21-172 (186)
297 KOG0070 GTP-binding ADP-ribosy 99.1 1.2E-10 2.7E-15 112.0 8.4 150 264-461 15-168 (181)
298 KOG0081 GTPase Rab27, small G 99.1 1.6E-11 3.4E-16 114.3 2.1 105 344-461 67-171 (219)
299 cd01853 Toc34_like Toc34-like 99.1 2E-09 4.3E-14 111.2 17.3 122 262-420 27-164 (249)
300 PRK13768 GTPase; Provisional 99.1 6.6E-10 1.4E-14 115.1 12.7 114 343-485 96-246 (253)
301 PTZ00099 rab6; Provisional 99.1 1.6E-09 3.5E-14 106.1 13.4 105 341-461 26-132 (176)
302 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 4E-09 8.7E-14 107.4 14.9 151 268-455 1-161 (232)
303 PRK09435 membrane ATPase/prote 99.0 9.9E-10 2.1E-14 117.5 10.9 102 342-461 147-250 (332)
304 KOG0090 Signal recognition par 99.0 1.1E-09 2.4E-14 107.4 9.9 113 267-419 39-159 (238)
305 cd03692 mtIF2_IVc mtIF2_IVc: t 99.0 2.2E-09 4.8E-14 92.2 10.6 76 497-575 3-82 (84)
306 KOG0083 GTPase Rab26/Rab37, sm 99.0 1.3E-10 2.8E-15 105.3 2.6 108 340-461 43-150 (192)
307 PRK09602 translation-associate 99.0 5.9E-09 1.3E-13 114.5 15.4 81 267-378 2-113 (396)
308 TIGR00991 3a0901s02IAP34 GTP-b 99.0 5.9E-09 1.3E-13 109.8 14.2 124 260-420 32-168 (313)
309 TIGR00073 hypB hydrogenase acc 98.9 5.4E-09 1.2E-13 105.0 11.5 96 343-461 102-197 (207)
310 KOG0074 GTP-binding ADP-ribosy 98.9 6.5E-09 1.4E-13 95.4 10.4 151 264-461 15-169 (185)
311 PTZ00258 GTP-binding protein; 98.9 1.9E-08 4E-13 109.7 14.9 83 265-378 20-126 (390)
312 PF05049 IIGP: Interferon-indu 98.9 6E-09 1.3E-13 112.4 10.9 149 265-455 34-200 (376)
313 cd03688 eIF2_gamma_II eIF2_gam 98.9 1.1E-08 2.3E-13 91.0 10.0 87 491-578 2-112 (113)
314 KOG0071 GTP-binding ADP-ribosy 98.9 1.5E-08 3.2E-13 93.0 10.9 149 266-461 17-168 (180)
315 PF00350 Dynamin_N: Dynamin fa 98.9 8.4E-09 1.8E-13 99.3 9.8 66 342-415 99-168 (168)
316 PF04548 AIG1: AIG1 family; I 98.8 4.4E-08 9.6E-13 98.8 14.1 134 267-440 1-154 (212)
317 smart00053 DYNc Dynamin, GTPas 98.8 1.2E-08 2.6E-13 104.6 9.9 146 265-420 25-207 (240)
318 TIGR00101 ureG urease accessor 98.8 1.8E-08 4E-13 100.7 9.3 94 343-461 91-186 (199)
319 TIGR00750 lao LAO/AO transport 98.8 1.4E-07 3E-12 100.3 15.9 99 342-461 125-228 (300)
320 TIGR02836 spore_IV_A stage IV 98.8 1.4E-07 2.9E-12 101.9 15.0 135 265-417 16-192 (492)
321 COG4917 EutP Ethanolamine util 98.7 2.4E-08 5.2E-13 90.2 7.6 130 268-461 3-136 (148)
322 PF03308 ArgK: ArgK protein; 98.7 4.1E-08 8.9E-13 100.2 10.1 169 265-461 28-220 (266)
323 KOG2486 Predicted GTPase [Gene 98.7 4.7E-08 1E-12 99.7 9.7 157 264-462 134-307 (320)
324 KOG0393 Ras-related small GTPa 98.7 2.3E-08 4.9E-13 98.6 6.5 154 265-461 3-169 (198)
325 cd01342 Translation_Factor_II_ 98.7 1E-07 2.2E-12 79.3 9.6 79 495-576 1-82 (83)
326 KOG4252 GTP-binding protein [S 98.7 9E-09 2E-13 97.9 3.2 155 262-461 16-171 (246)
327 KOG0077 Vesicle coat complex C 98.7 1.4E-07 3.1E-12 89.1 10.2 114 265-420 19-136 (193)
328 KOG0072 GTP-binding ADP-ribosy 98.7 3.3E-08 7.1E-13 91.2 5.7 150 265-461 17-169 (182)
329 PF03144 GTP_EFTU_D2: Elongati 98.6 1.1E-07 2.4E-12 79.2 8.0 68 508-576 1-74 (74)
330 COG1703 ArgK Putative periplas 98.6 2.7E-07 5.8E-12 95.5 12.0 103 342-461 142-244 (323)
331 cd03708 GTPBP_III Domain III o 98.6 1.5E-07 3.3E-12 81.1 8.4 65 584-662 2-67 (87)
332 cd03707 EFTU_III Domain III of 98.6 3.2E-07 6.9E-12 79.7 9.2 66 585-663 3-73 (90)
333 cd01900 YchF YchF subfamily. 98.6 1.2E-07 2.5E-12 99.2 7.6 80 269-379 1-104 (274)
334 PRK09601 GTP-binding protein Y 98.6 1.5E-07 3.4E-12 101.5 8.5 82 267-379 3-108 (364)
335 PF00735 Septin: Septin; Inte 98.5 8.6E-07 1.9E-11 93.2 13.5 144 266-441 4-176 (281)
336 KOG1707 Predicted Ras related/ 98.5 2.8E-07 6E-12 102.2 9.9 154 262-463 5-167 (625)
337 TIGR00993 3a0901s04IAP86 chlor 98.5 1.1E-06 2.5E-11 99.7 15.0 118 265-419 117-250 (763)
338 PRK10463 hydrogenase nickel in 98.5 4.1E-07 8.9E-12 95.3 9.8 97 342-461 183-279 (290)
339 COG0378 HypB Ni2+-binding GTPa 98.5 1.8E-07 3.8E-12 91.5 6.3 90 344-461 97-191 (202)
340 cd03706 mtEFTU_III Domain III 98.5 6.3E-07 1.4E-11 78.4 9.2 66 585-663 3-73 (93)
341 KOG0448 Mitofusin 1 GTPase, in 98.5 1.1E-06 2.3E-11 99.1 12.5 101 345-455 207-310 (749)
342 KOG1490 GTP-binding protein CR 98.5 4.8E-07 1E-11 98.6 9.3 161 262-463 164-333 (620)
343 KOG3886 GTP-binding protein [S 98.5 5.4E-07 1.2E-11 89.6 8.6 123 266-422 4-133 (295)
344 cd04092 mtEFG2_II_like mtEFG2_ 98.5 1E-06 2.3E-11 75.3 9.2 77 496-577 2-83 (83)
345 cd03690 Tet_II Tet_II: This su 98.4 8.7E-07 1.9E-11 76.3 8.5 79 492-576 1-84 (85)
346 PF14578 GTP_EFTU_D4: Elongati 98.4 2.4E-06 5.2E-11 72.3 9.9 76 494-576 4-80 (81)
347 cd04088 EFG_mtEFG_II EFG_mtEFG 98.4 1.8E-06 4E-11 73.7 9.3 77 496-577 2-83 (83)
348 KOG4423 GTP-binding protein-li 98.3 1.4E-08 3.1E-13 97.4 -5.4 158 266-463 25-186 (229)
349 cd03689 RF3_II RF3_II: this su 98.3 3.8E-06 8.1E-11 72.4 9.1 74 499-577 3-84 (85)
350 KOG0096 GTPase Ran/TC4/GSP1 (n 98.3 2.8E-06 6.1E-11 82.2 9.1 152 264-462 8-160 (216)
351 cd03699 lepA_II lepA_II: This 98.3 5.4E-06 1.2E-10 71.4 9.9 81 495-577 1-86 (86)
352 KOG3883 Ras family small GTPas 98.3 3E-05 6.5E-10 72.6 15.0 148 264-461 7-165 (198)
353 cd04091 mtEFG1_II_like mtEFG1_ 98.3 5.5E-06 1.2E-10 70.5 9.3 75 497-577 3-81 (81)
354 cd03691 BipA_TypA_II BipA_TypA 98.3 5.4E-06 1.2E-10 71.3 9.4 77 495-576 1-85 (86)
355 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.6E-06 3.6E-11 82.9 6.7 56 266-354 102-157 (157)
356 KOG1673 Ras GTPases [General f 98.2 5.9E-06 1.3E-10 77.4 9.5 153 264-461 18-176 (205)
357 KOG1547 Septin CDC10 and relat 98.2 1.7E-05 3.8E-10 79.4 13.1 144 265-441 45-218 (336)
358 cd04178 Nucleostemin_like Nucl 98.2 2.3E-06 5E-11 83.6 6.7 58 264-354 115-172 (172)
359 KOG1954 Endocytosis/signaling 98.2 7.8E-06 1.7E-10 86.3 10.5 171 265-460 57-263 (532)
360 PRK10416 signal recognition pa 98.2 1.4E-05 3E-10 85.7 12.5 94 342-461 195-300 (318)
361 KOG1486 GTP-binding protein DR 98.2 3.7E-06 7.9E-11 84.6 7.5 86 264-380 60-152 (364)
362 PRK14974 cell division protein 98.2 7.7E-06 1.7E-10 88.0 10.6 93 342-461 221-320 (336)
363 COG5019 CDC3 Septin family pro 98.1 4.8E-05 1E-09 81.1 14.5 145 264-441 21-196 (373)
364 cd01859 MJ1464 MJ1464. This f 98.1 8.9E-06 1.9E-10 77.6 8.2 89 362-485 7-95 (156)
365 PF00448 SRP54: SRP54-type pro 98.1 2.4E-05 5.1E-10 78.1 11.1 67 342-419 82-154 (196)
366 KOG3905 Dynein light intermedi 98.1 2.4E-05 5.3E-10 81.4 11.3 53 403-461 221-280 (473)
367 cd01858 NGP_1 NGP-1. Autoanti 98.1 8.7E-06 1.9E-10 77.9 7.5 82 361-461 2-85 (157)
368 KOG1487 GTP-binding protein DR 98.1 8.8E-06 1.9E-10 82.3 7.7 84 266-380 59-149 (358)
369 TIGR00064 ftsY signal recognit 98.0 0.00012 2.6E-09 76.8 15.7 94 342-461 153-258 (272)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.1E-05 4.6E-10 73.9 8.2 81 359-459 3-85 (141)
371 cd01849 YlqF_related_GTPase Yl 98.0 1E-05 2.2E-10 77.3 6.1 57 265-354 99-155 (155)
372 PF03193 DUF258: Protein of un 98.0 5.6E-06 1.2E-10 79.7 3.9 23 267-289 36-58 (161)
373 cd01851 GBP Guanylate-binding 98.0 9.3E-05 2E-09 75.4 12.9 90 265-379 6-103 (224)
374 PF00641 zf-RanBP: Zn-finger i 98.0 3E-06 6.6E-11 58.2 1.2 29 48-76 2-30 (30)
375 COG0012 Predicted GTPase, prob 97.9 2.3E-05 5.1E-10 83.9 8.3 83 266-379 2-109 (372)
376 cd01855 YqeH YqeH. YqeH is an 97.9 1.4E-05 3E-10 79.0 6.2 63 267-354 128-190 (190)
377 COG1161 Predicted GTPases [Gen 97.9 1.2E-05 2.6E-10 86.3 6.2 56 265-353 131-186 (322)
378 cd01856 YlqF YlqF. Proteins o 97.9 2.4E-05 5.2E-10 76.1 7.6 88 352-461 3-91 (171)
379 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.5E-05 3.2E-10 75.0 5.6 22 268-289 85-106 (141)
380 cd04094 selB_III This family r 97.9 0.0001 2.2E-09 65.1 10.4 76 572-662 1-77 (97)
381 cd03112 CobW_like The function 97.9 3.2E-05 7E-10 74.4 7.9 22 268-289 2-23 (158)
382 PRK12288 GTPase RsgA; Reviewed 97.9 1.6E-05 3.4E-10 86.2 6.2 63 269-357 208-270 (347)
383 TIGR01425 SRP54_euk signal rec 97.9 7.5E-05 1.6E-09 82.6 11.5 65 342-418 181-252 (429)
384 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.5E-05 5.4E-10 82.6 7.3 57 265-354 120-176 (287)
385 cd01855 YqeH YqeH. YqeH is an 97.9 4.7E-05 1E-09 75.2 8.4 91 357-461 24-115 (190)
386 TIGR03596 GTPase_YlqF ribosome 97.8 2.8E-05 6E-10 81.8 6.7 57 265-354 117-173 (276)
387 COG1162 Predicted GTPases [Gen 97.8 2.5E-05 5.4E-10 81.8 5.8 64 268-357 166-229 (301)
388 cd01856 YlqF YlqF. Proteins o 97.8 3.7E-05 8.1E-10 74.7 6.7 57 265-354 114-170 (171)
389 TIGR00157 ribosome small subun 97.8 2.7E-05 5.9E-10 80.4 6.1 63 268-357 122-184 (245)
390 TIGR00157 ribosome small subun 97.8 4.6E-05 1E-09 78.7 7.7 82 363-461 32-113 (245)
391 PF05783 DLIC: Dynein light in 97.8 0.00053 1.1E-08 77.0 16.4 51 404-460 196-253 (472)
392 TIGR03596 GTPase_YlqF ribosome 97.8 4.5E-05 9.9E-10 80.1 7.5 88 352-461 5-93 (276)
393 cd03115 SRP The signal recogni 97.8 0.00025 5.4E-09 68.9 12.2 67 342-419 81-153 (173)
394 cd01849 YlqF_related_GTPase Yl 97.8 6.8E-05 1.5E-09 71.6 7.9 74 369-461 1-75 (155)
395 TIGR00092 GTP-binding protein 97.8 4.9E-05 1.1E-09 82.4 7.5 82 267-379 3-109 (368)
396 PRK12289 GTPase RsgA; Reviewed 97.8 2.8E-05 6.2E-10 84.3 5.7 64 268-357 174-237 (352)
397 KOG2655 Septin family protein 97.8 0.00027 5.9E-09 75.9 13.0 144 265-441 20-192 (366)
398 KOG1534 Putative transcription 97.8 4.8E-05 1E-09 75.1 6.5 73 343-419 97-178 (273)
399 cd03700 eEF2_snRNP_like_II EF2 97.7 0.00016 3.4E-09 63.3 8.3 75 497-576 3-92 (93)
400 KOG1491 Predicted GTP-binding 97.7 9.3E-05 2E-09 77.9 7.8 84 265-379 19-126 (391)
401 KOG1533 Predicted GTPase [Gene 97.7 0.00018 4E-09 72.2 9.2 77 342-419 95-177 (290)
402 PRK12289 GTPase RsgA; Reviewed 97.7 0.00016 3.5E-09 78.5 9.4 80 364-461 86-165 (352)
403 PRK09563 rbgA GTPase YlqF; Rev 97.7 9.7E-05 2.1E-09 78.1 7.5 89 351-461 7-96 (287)
404 cd03114 ArgK-like The function 97.6 0.0003 6.6E-09 67.0 9.9 34 342-378 90-123 (148)
405 PRK11889 flhF flagellar biosyn 97.6 0.00016 3.5E-09 78.7 8.8 66 343-419 320-391 (436)
406 PRK00098 GTPase RsgA; Reviewed 97.6 0.00018 3.8E-09 76.6 8.9 80 365-461 78-157 (298)
407 cd04090 eEF2_II_snRNP Loc2 eEF 97.6 0.00034 7.3E-09 61.3 9.1 68 496-565 2-83 (94)
408 PRK13796 GTPase YqeH; Provisio 97.6 8.3E-05 1.8E-09 81.3 6.3 61 267-355 161-221 (365)
409 PRK00771 signal recognition pa 97.6 0.0004 8.6E-09 77.4 11.6 63 344-418 176-245 (437)
410 PRK14722 flhF flagellar biosyn 97.6 0.00033 7.1E-09 76.4 10.1 24 266-289 137-160 (374)
411 TIGR03597 GTPase_YqeH ribosome 97.5 0.00013 2.7E-09 79.7 6.6 92 267-386 155-256 (360)
412 smart00547 ZnF_RBZ Zinc finger 97.5 3.3E-05 7.1E-10 51.2 1.2 25 49-73 1-25 (26)
413 cd03110 Fer4_NifH_child This p 97.5 0.00057 1.2E-08 66.6 10.4 66 342-418 91-156 (179)
414 cd01859 MJ1464 MJ1464. This f 97.5 0.00017 3.6E-09 68.8 6.3 23 266-288 101-123 (156)
415 PRK14721 flhF flagellar biosyn 97.5 0.00019 4.1E-09 79.4 7.4 68 341-419 267-340 (420)
416 PF02492 cobW: CobW/HypB/UreG, 97.5 7.1E-05 1.5E-09 73.4 3.7 68 343-420 84-156 (178)
417 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00016 3.5E-09 76.4 6.4 65 267-357 162-226 (287)
418 COG0523 Putative GTPases (G3E 97.5 0.0011 2.4E-08 71.1 12.4 92 344-453 85-184 (323)
419 COG3640 CooC CO dehydrogenase 97.5 0.00069 1.5E-08 68.4 9.9 65 343-418 133-198 (255)
420 TIGR03597 GTPase_YqeH ribosome 97.5 0.00037 8.1E-09 76.1 8.9 95 354-462 50-144 (360)
421 PRK06995 flhF flagellar biosyn 97.4 0.0012 2.5E-08 74.4 12.5 111 341-484 332-449 (484)
422 PRK12727 flagellar biosynthesi 97.4 0.00095 2.1E-08 75.4 10.5 24 266-289 350-373 (559)
423 PRK12724 flagellar biosynthesi 97.3 0.0011 2.3E-08 73.2 10.5 66 342-418 298-372 (432)
424 PRK11537 putative GTP-binding 97.3 0.0018 3.9E-08 69.5 11.7 25 265-289 3-27 (318)
425 PRK12726 flagellar biosynthesi 97.3 0.00031 6.7E-09 76.3 5.6 25 265-289 205-229 (407)
426 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00094 2E-08 70.7 9.1 79 365-461 76-154 (287)
427 COG1419 FlhF Flagellar GTP-bin 97.3 0.0015 3.2E-08 71.2 10.4 128 266-419 203-352 (407)
428 PRK00098 GTPase RsgA; Reviewed 97.3 0.00044 9.5E-09 73.6 6.3 23 267-289 165-187 (298)
429 PRK06731 flhF flagellar biosyn 97.3 0.00056 1.2E-08 71.6 6.8 66 343-419 154-225 (270)
430 KOG1424 Predicted GTP-binding 97.2 0.00028 6E-09 77.9 4.6 62 265-359 313-376 (562)
431 PRK10867 signal recognition pa 97.2 0.0011 2.5E-08 73.7 9.5 24 265-288 99-122 (433)
432 PRK14723 flhF flagellar biosyn 97.2 0.0037 8.1E-08 73.7 14.1 23 267-289 186-208 (767)
433 TIGR00487 IF-2 translation ini 97.2 0.003 6.5E-08 73.2 13.1 176 349-577 392-576 (587)
434 TIGR02475 CobW cobalamin biosy 97.2 0.0026 5.6E-08 69.0 11.6 24 266-289 4-27 (341)
435 PRK12288 GTPase RsgA; Reviewed 97.2 0.0015 3.3E-08 70.9 9.8 81 365-461 118-198 (347)
436 PF09547 Spore_IV_A: Stage IV 97.2 0.012 2.6E-07 64.4 16.2 26 266-291 17-42 (492)
437 KOG2485 Conserved ATP/GTP bind 97.2 0.00058 1.2E-08 71.4 6.0 64 265-353 142-205 (335)
438 TIGR00959 ffh signal recogniti 97.2 0.0012 2.7E-08 73.3 9.0 65 342-418 181-252 (428)
439 PRK12723 flagellar biosynthesi 97.2 0.0014 2.9E-08 72.1 9.0 67 342-419 253-326 (388)
440 PRK01889 GTPase RsgA; Reviewed 97.1 0.0017 3.8E-08 70.8 9.5 78 365-461 110-187 (356)
441 PRK05703 flhF flagellar biosyn 97.1 0.0028 6E-08 70.7 11.2 66 342-418 298-370 (424)
442 PRK05306 infB translation init 97.1 0.0062 1.3E-07 72.6 14.4 176 349-577 594-778 (787)
443 CHL00189 infB translation init 97.1 0.0063 1.4E-07 71.9 14.3 176 349-577 549-732 (742)
444 cd02036 MinD Bacterial cell di 97.1 0.0053 1.2E-07 59.3 11.4 64 345-418 64-127 (179)
445 KOG0082 G-protein alpha subuni 97.1 0.0037 8E-08 67.3 11.0 85 330-418 181-275 (354)
446 PRK13796 GTPase YqeH; Provisio 97.1 0.0026 5.6E-08 69.7 9.9 92 356-462 58-150 (365)
447 cd03111 CpaE_like This protein 97.0 0.005 1.1E-07 55.1 9.4 60 345-414 44-106 (106)
448 PF00503 G-alpha: G-protein al 97.0 0.0037 8E-08 69.0 10.2 85 330-418 221-316 (389)
449 KOG2743 Cobalamin synthesis pr 96.9 0.0074 1.6E-07 62.9 11.1 27 263-289 54-80 (391)
450 COG0541 Ffh Signal recognition 96.9 0.0037 8.1E-08 68.4 9.2 136 263-418 97-252 (451)
451 KOG3887 Predicted small GTPase 96.9 0.0016 3.5E-08 65.7 5.7 152 267-455 28-187 (347)
452 smart00010 small_GTPase Small 96.7 0.0032 7E-08 56.6 5.8 21 267-287 1-21 (124)
453 KOG2484 GTPase [General functi 96.6 0.0013 2.8E-08 70.8 3.3 59 263-354 249-307 (435)
454 KOG0447 Dynamin-like GTP bindi 96.6 0.012 2.6E-07 65.4 10.3 148 264-419 306-493 (980)
455 KOG0780 Signal recognition par 96.6 0.0056 1.2E-07 65.8 7.6 126 264-418 99-253 (483)
456 cd00066 G-alpha G protein alph 96.6 0.0079 1.7E-07 64.6 8.9 84 331-418 148-241 (317)
457 cd02038 FleN-like FleN is a me 96.6 0.023 4.9E-07 53.4 11.0 65 344-418 45-110 (139)
458 COG1162 Predicted GTPases [Gen 96.6 0.0096 2.1E-07 62.7 9.2 80 366-461 78-157 (301)
459 KOG4181 Uncharacterized conser 96.5 0.024 5.2E-07 60.1 11.6 25 265-289 187-211 (491)
460 cd03702 IF2_mtIF2_II This fami 96.5 0.018 3.9E-07 50.7 9.0 74 498-577 4-79 (95)
461 smart00275 G_alpha G protein a 96.5 0.013 2.7E-07 63.7 9.5 87 331-418 171-264 (342)
462 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.022 4.8E-07 48.4 8.7 69 269-380 2-71 (99)
463 TIGR03348 VI_IcmF type VI secr 96.3 0.0091 2E-07 74.8 8.6 19 268-286 113-131 (1169)
464 COG0532 InfB Translation initi 96.3 0.015 3.2E-07 65.2 9.2 79 496-577 415-497 (509)
465 COG0552 FtsY Signal recognitio 96.3 0.02 4.2E-07 61.0 9.3 28 263-290 136-163 (340)
466 KOG1707 Predicted Ras related/ 96.3 0.024 5.1E-07 64.0 10.3 149 259-455 418-568 (625)
467 PRK08099 bifunctional DNA-bind 96.2 0.018 3.9E-07 63.8 8.9 30 264-293 217-246 (399)
468 cd02042 ParA ParA and ParB of 96.2 0.034 7.3E-07 49.0 9.0 35 344-380 40-74 (104)
469 KOG3859 Septins (P-loop GTPase 96.0 0.02 4.3E-07 59.1 7.5 25 264-288 40-64 (406)
470 cd03701 IF2_IF5B_II IF2_IF5B_I 96.0 0.052 1.1E-06 47.7 9.2 73 498-576 4-78 (95)
471 KOG2423 Nucleolar GTPase [Gene 95.8 0.0037 7.9E-08 67.1 1.2 27 263-289 304-330 (572)
472 PRK13695 putative NTPase; Prov 95.7 0.043 9.3E-07 53.3 8.4 22 268-289 2-23 (174)
473 PRK01889 GTPase RsgA; Reviewed 95.7 0.012 2.6E-07 64.2 4.8 23 267-289 196-218 (356)
474 cd04178 Nucleostemin_like Nucl 95.6 0.017 3.7E-07 56.4 5.2 42 369-419 1-44 (172)
475 CHL00175 minD septum-site dete 95.6 0.071 1.5E-06 55.9 10.0 66 343-418 126-191 (281)
476 TIGR00491 aIF-2 translation in 95.6 0.049 1.1E-06 63.3 9.4 75 501-577 473-549 (590)
477 PRK10751 molybdopterin-guanine 95.2 0.057 1.2E-06 52.9 7.3 25 265-289 5-29 (173)
478 cd03703 aeIF5B_II aeIF5B_II: T 95.1 0.17 3.8E-06 45.6 9.4 77 498-577 4-94 (110)
479 KOG4477 RING1 interactor RYBP 94.9 0.014 3.1E-07 56.0 2.0 29 47-75 21-49 (228)
480 PF13207 AAA_17: AAA domain; P 94.8 0.029 6.3E-07 50.6 3.8 25 268-292 1-25 (121)
481 COG1341 Predicted GTPase or GT 94.8 0.057 1.2E-06 58.9 6.4 29 263-291 70-98 (398)
482 KOG0781 Signal recognition par 94.7 0.057 1.2E-06 59.7 6.2 150 262-419 374-544 (587)
483 PF06858 NOG1: Nucleolar GTP-b 94.7 0.14 3.1E-06 40.6 6.8 50 362-416 7-58 (58)
484 COG3523 IcmF Type VI protein s 94.5 0.048 1E-06 67.2 5.7 18 269-286 128-145 (1188)
485 PRK04004 translation initiatio 94.3 0.14 3E-06 59.7 8.6 75 501-577 475-551 (586)
486 PF13555 AAA_29: P-loop contai 94.1 0.05 1.1E-06 44.0 3.2 22 268-289 25-46 (62)
487 PRK14845 translation initiatio 94.0 0.14 3.1E-06 62.8 8.3 75 501-577 931-1007(1049)
488 PF03205 MobB: Molybdopterin g 94.0 0.051 1.1E-06 51.2 3.7 23 267-289 1-23 (140)
489 COG1618 Predicted nucleotide k 94.0 0.32 7E-06 46.8 8.9 24 265-288 4-27 (179)
490 KOG1424 Predicted GTP-binding 93.9 0.16 3.4E-06 56.8 7.6 81 356-455 163-244 (562)
491 PF13671 AAA_33: AAA domain; P 93.8 0.056 1.2E-06 50.1 3.5 23 269-291 2-24 (143)
492 PRK08233 hypothetical protein; 93.8 0.063 1.4E-06 52.0 3.9 27 265-291 2-28 (182)
493 KOG2484 GTPase [General functi 93.8 0.12 2.7E-06 56.0 6.3 75 349-432 127-202 (435)
494 PRK08118 topology modulation p 93.7 0.061 1.3E-06 52.2 3.6 25 267-291 2-26 (167)
495 COG0563 Adk Adenylate kinase a 93.7 0.061 1.3E-06 52.9 3.6 25 268-292 2-26 (178)
496 PRK07261 topology modulation p 93.7 0.061 1.3E-06 52.4 3.6 22 268-289 2-23 (171)
497 cd02032 Bchl_like This family 93.6 0.44 9.5E-06 49.6 10.2 69 343-417 115-184 (267)
498 PRK14738 gmk guanylate kinase; 93.6 0.077 1.7E-06 53.3 4.3 30 259-288 6-35 (206)
499 TIGR00235 udk uridine kinase. 93.5 0.075 1.6E-06 53.2 4.1 28 264-291 4-31 (207)
500 PRK14530 adenylate kinase; Pro 93.5 0.072 1.6E-06 53.7 3.9 27 266-292 3-29 (215)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-81 Score=658.31 Aligned_cols=399 Identities=42% Similarity=0.725 Sum_probs=388.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+.+++++++||++||||||+++|++++|.|+.+.+++++++++..|+++|.|+|+||.+++||+||+|++.++..|+++
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
.+.++|+|+|||.+|+++|+.++.+||++||||||..++||++|. .++|++||+.+++.+|+.++||++||||+++|++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~-~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFG-VGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccc-cCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999999999994 6899999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEeE
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~v 502 (666)
++|++++.++..+++.+||...+++|||+||..|+|+.+.. ..++||+|++||++|+.+.+|.+..++||+++|+++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v 239 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeE
Confidence 99999999999999999999889999999999999998866 379999999999999999999999999999999999
Q ss_pred eecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCCC
Q 005973 503 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (666)
Q Consensus 503 ~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p 581 (666)
+.+. .|++ ..|||++|.|++||+|+++|.+...+|++|++++.+++.|.+||+|++.|+|+...+|++|+|+++++.|
T Consensus 240 ~~i~~~gtv-~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 240 YSISGIGTV-PVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNP 318 (428)
T ss_pred EEecCCceE-EEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCC
Confidence 9977 9999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEee
Q 005973 582 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQ 661 (666)
Q Consensus 582 ~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve 661 (666)
+..+..|.|++.+|.|+.+|..||.++||+|+..++|++.+|..++|+.||+.+.+.|.+++.|+.++|+|++.+|+|+|
T Consensus 319 ~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e 398 (428)
T COG5256 319 PTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLE 398 (428)
T ss_pred cccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEee
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 005973 662 YYFVC 666 (666)
Q Consensus 662 ~~~~~ 666 (666)
.|+++
T Consensus 399 ~~~~~ 403 (428)
T COG5256 399 KVSEI 403 (428)
T ss_pred ecccC
Confidence 99875
No 2
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-76 Score=636.67 Aligned_cols=406 Identities=46% Similarity=0.781 Sum_probs=393.5
Q ss_pred CcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE
Q 005973 259 KKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY 338 (666)
Q Consensus 259 ~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~ 338 (666)
.+...+.+++++++||+++|||||+++|++.+|.|..+.|++++++++..|+++|.|+|.+|...+||+||+|+++....
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 34445578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 339 ~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
|+...+.++|+|+|||.+|+++|+.++.+||++||||||+.+.||.+|+ +.+|++||+.+++.||+.++||++||||++
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLGISQLIVAINKMDLV 328 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence 9999999999999999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhhh-hhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCcee
Q 005973 419 QYSKDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLM 497 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l-~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~ 497 (666)
+|+++||++|+..+..|| +.+||...++.|||||+++|+|+....+.+.+..||+|++||++|+.+.+|.+...+||++
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~l 408 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRL 408 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEE
Confidence 999999999999999999 8999999999999999999999999888888999999999999999999998899999999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEe
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~ 576 (666)
.|.++++.+ .| +.++|+|++|.|+.||+|+++|+...++|++|.+++.+..+|.|||.|.+.|.++++..++.|+|+|
T Consensus 409 tIsdi~~~~~~~-~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 409 TISDIYPLPSSG-VSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred EhhheeecCCCe-eEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 999999999 77 4599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeC
Q 005973 577 -HPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQS 655 (666)
Q Consensus 577 -~~~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~ 655 (666)
.+++|++.+..|.+++.||+...||..|.++.+|+|+..++|++.++...+|+.||+..|++||+|..||.|.+++++.
T Consensus 488 ~~~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~ 567 (603)
T KOG0458|consen 488 SGPQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETE 567 (603)
T ss_pred cCCCccccceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeecccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeeccCC
Q 005973 656 QNTSFQYYFVC 666 (666)
Q Consensus 656 ~pI~ve~~~~~ 666 (666)
.|||+|+|.+|
T Consensus 568 ~pI~~etf~~~ 578 (603)
T KOG0458|consen 568 RPICLETFAEN 578 (603)
T ss_pred Cchhhhhhhhc
Confidence 99999999886
No 3
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=5.6e-72 Score=618.61 Aligned_cols=399 Identities=35% Similarity=0.649 Sum_probs=377.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+++++|+++||+|+|||||+++|++..+.+..+.++++++++...++++|.|+|++|...+|+++|+|++..+..|++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35789999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc--cc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv--~~ 420 (666)
++.++|+|||||++|..+|+.+++.+|++||||||..|.|+.++.. .+|+++|+.++..+|+|++|||+||||+. .|
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~-~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK-DGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCC-CchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 9999999999999999999999999999999999999988887763 57999999999999999899999999987 57
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
++++|+++.+++..+++..+|...+++|+|+||++|+|+.+... .++||+|++|+++|+.+++|.+..++||+|+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~---~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST---NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc---CCcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 78899999999999999999987778999999999999987543 389999999999999998888888999999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecC-
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP- 578 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~- 578 (666)
++|+++ .|+| +.|+|++|.|++||+|.++|++..++|++|++++.+++.|.|||+|+|.|++++..++++|+|||++
T Consensus 240 ~v~~~~g~G~v-v~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 240 DVYKIGGIGTV-PVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred EEEEeCCcEEE-EEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999998 8988 8999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceE
Q 005973 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNT 658 (666)
Q Consensus 579 ~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI 658 (666)
+.|+..+++|+|+++||+++.||..||++.||+|+.+++|+|.+|.+++|.+||+.++++|++|++|+.|.|+|++.+||
T Consensus 319 ~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi 398 (447)
T PLN00043 319 DDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPM 398 (447)
T ss_pred CCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcE
Confidence 56777899999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EeeeccCC
Q 005973 659 SFQYYFVC 666 (666)
Q Consensus 659 ~ve~~~~~ 666 (666)
|+|+|++|
T Consensus 399 ~~e~~~~~ 406 (447)
T PLN00043 399 VVETFSEY 406 (447)
T ss_pred EEEecccC
Confidence 99999876
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=6e-71 Score=610.75 Aligned_cols=399 Identities=38% Similarity=0.693 Sum_probs=378.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+++++|+++||+|+|||||+++|++.++.+....++++++++...|+++++|+|++|...+|+++|+|++..+..|+++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc--cccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D--lv~~ 420 (666)
++.++|+|||||.+|..+++.++..+|++||||||..|.||.+|.. .+||++|+.++..+|+|++|||+|||| +++|
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999999888864 579999999999999998999999999 6678
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
++++|+++.+++..+++.+++...++++||+||++|+|+.+... .++||+|++|+++|+.+++|.+..++||+|+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 89999999999999999999977779999999999999987543 489999999999999998888888999999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCC
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
++|+++ .|++ ++|+|.+|.|++||+|.++|++..++|++|+.++.+++.|.|||+|+|.|++++..++++|+|||+++
T Consensus 240 ~v~~v~g~Gtv-v~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 240 DVYKIGGIGTV-PVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred EEEecCCceEE-EEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999998 8988 89999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceE
Q 005973 580 -FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNT 658 (666)
Q Consensus 580 -~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI 658 (666)
.|+..+++|+|++.||+++.||.+||++.+|+|+.+++|+|..|.+.+|.+||+..+++|++|++|+.|.|+|+|++||
T Consensus 319 ~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 398 (446)
T PTZ00141 319 NDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPM 398 (446)
T ss_pred CCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCce
Confidence 5566789999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EeeeccCC
Q 005973 659 SFQYYFVC 666 (666)
Q Consensus 659 ~ve~~~~~ 666 (666)
|+|+|++|
T Consensus 399 ~~e~~~~~ 406 (446)
T PTZ00141 399 CVEVFNEY 406 (446)
T ss_pred EEeecccC
Confidence 99999875
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.4e-68 Score=589.91 Aligned_cols=392 Identities=40% Similarity=0.707 Sum_probs=369.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+++++|+++||+|+|||||+++|++..+.++...++++++++...|+.++.|+|.+|...+|+++|+|++.....++++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCC--CccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV--GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~--g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
++.++|||||||++|..+++.++..+|++|||||+.. + +..++.+++.++..++++++|||+||+|+..+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG--------VMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC--------CCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999999987 4 35789999999999998779999999999877
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
++++++.+.+++..+++.+++....++++++||++|+|+.++.. .++||+|++|+++|+.++++.+..++||+|+|+
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~---~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~ 231 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE---NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQ 231 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc---CCCcccHHHHHHHHhcCCCCccccCCCcEEEEE
Confidence 67778888899999998888865567899999999999988654 489999999999999998888888999999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCC
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
++|.++ .|++ ++|+|.+|+|++||+|+++|++..++|++|+.++.+++.|.|||+|+|.|++++..++++|+|||+++
T Consensus 232 ~~~~~~g~G~v-v~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 232 DVYSISGVGTV-PVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEeeCCCeEE-EEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 999998 8988 89999999999999999999999999999999999999999999999999999989999999999998
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEE
Q 005973 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTS 659 (666)
Q Consensus 580 ~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ 659 (666)
.++..++.|+|++.||+++.||.+|+++.+|+|+.+++|+|.+|...+|.+|++..+++|++|++|+.|.|+|+|.+|+|
T Consensus 311 ~~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~ 390 (425)
T PRK12317 311 NPPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLV 390 (425)
T ss_pred CCCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeE
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCC
Q 005973 660 FQYYFVC 666 (666)
Q Consensus 660 ve~~~~~ 666 (666)
+|+|++|
T Consensus 391 ~~~~~~~ 397 (425)
T PRK12317 391 IEKVKEI 397 (425)
T ss_pred EEeCCcC
Confidence 9999865
No 6
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=7.6e-68 Score=585.87 Aligned_cols=395 Identities=38% Similarity=0.685 Sum_probs=371.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+.+++|+++||+|+|||||+++|++..+.++...++++++++...|+++|.|+|++|...+|+++|+|++.....|.+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
+..++|||||||++|...+..++..+|++|||||++.+.|+ ...++.+|+.++..++++++|||+||+|++++++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 99999999999999999999999999999999999988544 2468889998888899877999999999998777
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEeE
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 502 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~v 502 (666)
++++.+.+++..+++..++....++++++||++|+|+.+... .++||+|++|+++|+.++++.+..++||+|+|+++
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~---~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE---NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc---CCccccchHHHHHHhcCCCCCCccCCCcEEEEEEE
Confidence 888888999999999888876678999999999999988654 37999999999999999888888889999999999
Q ss_pred eecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCCC
Q 005973 503 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (666)
Q Consensus 503 ~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p 581 (666)
|.++ .|+| ++|+|.+|.|++||.|+++|.+..++|++|++++.+++.|.|||+|+|.|++++..++++|+||++++.+
T Consensus 236 ~~~~g~G~v-v~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 236 YSITGVGTV-PVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EecCCCeEE-EEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCC
Confidence 9998 8998 8999999999999999999999999999999999999999999999999999999999999999999878
Q ss_pred cceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEee
Q 005973 582 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQ 661 (666)
Q Consensus 582 ~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve 661 (666)
+..++.|+|++.||+++.||.+|++++||+|+.+++|+|.+|...+|++|++..+++|++|++|+.|.|+|+|++|||+|
T Consensus 315 ~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e 394 (426)
T TIGR00483 315 PKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIE 394 (426)
T ss_pred CceeeEEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEe
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 005973 662 YYFVC 666 (666)
Q Consensus 662 ~~~~~ 666 (666)
+|++|
T Consensus 395 ~~~~~ 399 (426)
T TIGR00483 395 AVKEI 399 (426)
T ss_pred ecccC
Confidence 99875
No 7
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-65 Score=525.22 Aligned_cols=386 Identities=31% Similarity=0.513 Sum_probs=360.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhC--CCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQG--KGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g--~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
.+..++++.+|+++-||||||+||+++...+-++++...++.++..| .+.+.|+.++|.+..||+.|||||+++++|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45679999999999999999999999999999999999998887444 4668999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
+.++.|++.|||||+.|.++|..|++.||++|++|||..| +..||+.|..++..||++|+|+++||||+++|
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 9999999999999999999999999999999999999998 46799999999999999999999999999999
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
++++|+.|..++..+.+++++.. +.+||+||+.|+|+...+ ..|+||+|++||+.|+.+........+||||||+
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s---~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ 229 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKD--VRFIPISALLGDNVVSKS---ENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQ 229 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc--ceEEechhccCCcccccc---cCCCcccCccHHHHHhhccccccccccceeeceE
Confidence 99999999999999999999854 589999999999998864 3599999999999999998887777889999999
Q ss_pred eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 501 ~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
.|.+.......+.|+|.+|++++||.|++.|+|+..+|+.|..+...+.+|.||+.|+|.|. +..++.||++|++.+.
T Consensus 230 ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~ 307 (431)
T COG2895 230 YVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADA 307 (431)
T ss_pred EecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCC
Confidence 99998733333799999999999999999999999999999999999999999999999987 4457889999999999
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005973 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSF 660 (666)
Q Consensus 581 p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~v 660 (666)
++.++..|.|.++|+. ..|+.+|..|.+.+++.++.++|..|.+.+|.+|.+.. .+..|..|+.+.|+|.+++|||+
T Consensus 308 ~~~~~~~f~A~vvWm~-~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~pi~f 384 (431)
T COG2895 308 PPAVADAFDADVVWMD-EEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDKPIAF 384 (431)
T ss_pred CcchhhhcceeEEEec-CCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCCceee
Confidence 9999999999999997 79999999999999999999999999999999998854 78899999999999999999999
Q ss_pred eeccCC
Q 005973 661 QYYFVC 666 (666)
Q Consensus 661 e~~~~~ 666 (666)
+.|.+|
T Consensus 385 d~Y~~N 390 (431)
T COG2895 385 DAYAEN 390 (431)
T ss_pred cccccC
Confidence 999876
No 8
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2.8e-64 Score=553.10 Aligned_cols=381 Identities=30% Similarity=0.502 Sum_probs=352.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCC--cchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g--~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
++|+|+||+|||||||+++|++..+.+..+.+.++.+++...|+. +|.|+|++|..++|+++|+|++..+..+++.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999999999999999999999999888874 799999999999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
+++|||||||++|..++..++..+|++||||||..| +..|+++|+.++..++++++|||+||||++.+++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 999999999999999999999999999999999988 467999999999999998899999999999877778
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEeEee
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLK 504 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~v~~ 504 (666)
++.+.+++..+++.+++. .++++|+||++|+|+.++.. .++||+|++|+++|+.++++.+..++||+|+|.++++
T Consensus 153 ~~~i~~~~~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~ 227 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNVVSRSE---SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNR 227 (406)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEeecccCCCCccccc---CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEee
Confidence 888889998888888873 57899999999999987553 4899999999999999988888888999999999987
Q ss_pred cC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCCCcc
Q 005973 505 SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVA 583 (666)
Q Consensus 505 ~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~ 583 (666)
.. .+.- +.|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|||+|+|.|++ ..++++|+|||+++.++.
T Consensus 228 ~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 228 PNLDFRG-YAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred cCCCcEE-EEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 65 2333 6899999999999999999999999999999999999999999999999984 467999999999998888
Q ss_pred eeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeec
Q 005973 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYY 663 (666)
Q Consensus 584 ~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~ 663 (666)
.+..|+|++.||++ .||..|++++||+|+.+++|+|..|...+|++||+. .+|++|++|+.|.|+|++++|||+|+|
T Consensus 305 ~~~~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~~~ 381 (406)
T TIGR02034 305 VADQFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFDPY 381 (406)
T ss_pred cceEEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccCcc
Confidence 89999999999984 799999999999999999999999999999999984 468999999999999999999999999
Q ss_pred cCC
Q 005973 664 FVC 666 (666)
Q Consensus 664 ~~~ 666 (666)
++|
T Consensus 382 ~~~ 384 (406)
T TIGR02034 382 AEN 384 (406)
T ss_pred cCC
Confidence 875
No 9
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-65 Score=531.78 Aligned_cols=400 Identities=37% Similarity=0.655 Sum_probs=383.4
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
..++.++|++++||+++||||+-+.|++..+.++.+++++|++++++.++.+|+++|.+|...+||+.|.|+.++..+|+
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc--cc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AV 418 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D--lv 418 (666)
+...+++|+|+|||..|.++|+.++.+||+++||+.|..+.|+.+|+. .+||++|..+++.+|+.++|+++|||| .+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer-GgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc-ccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 999999999999999999999999999999999999999999999997 579999999999999999999999999 46
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCC-CCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCcee
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLM 497 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~-~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~ 497 (666)
+|+.+||+++...+..+|+.++|+.. .+.++|+|+++|.|+.+..+ ..++||.|+++|+.|+.++...|..+.||++
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~ 310 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPIFLEYLDELPHLERILNGPIRC 310 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCccceehhccCcccccCCCCEEe
Confidence 89999999999999999999988763 57899999999999988654 5799999999999999999889999999999
Q ss_pred eEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEec
Q 005973 498 PICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (666)
Q Consensus 498 ~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~ 577 (666)
+|.+-|+. .|+| +.|+|++|+|++||.++++|.++.+.|.+|......++.+.+|++|-|.|+||+..+|..|.|||+
T Consensus 311 pI~~Kykd-mGTv-v~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~ 388 (501)
T KOG0459|consen 311 PVANKYKD-MGTV-VGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCS 388 (501)
T ss_pred ehhhhccc-cceE-EEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEec
Confidence 99999977 6998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCce
Q 005973 578 PDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQN 657 (666)
Q Consensus 578 ~~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~p 657 (666)
+++|....+.|.|+|.++.|..-|..||..+||+|+.-..|.| +++++||.+||+..|++|+|++.|+.++++|+...|
T Consensus 389 ~~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~ 467 (501)
T KOG0459|consen 389 PNNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGP 467 (501)
T ss_pred CCCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCc
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred EEeeeccCC
Q 005973 658 TSFQYYFVC 666 (666)
Q Consensus 658 I~ve~~~~~ 666 (666)
||+|+|.++
T Consensus 468 iCle~fkd~ 476 (501)
T KOG0459|consen 468 ICLETFKDY 476 (501)
T ss_pred Eehhhcccc
Confidence 999999874
No 10
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=9e-64 Score=557.43 Aligned_cols=386 Identities=30% Similarity=0.465 Sum_probs=353.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCC--CcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~--g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
.+..++|+|+||+|+|||||+++|++..+.+..+.+.++++++...|+ ++|.|+|++|...+|+++|+|++..+..++
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 457799999999999999999999999999999999999999988887 489999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
+++.+++|||||||++|..++..++..+|++||||||..| +..|+++|+.++..++++++|||+||||++.+
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATLLGIKHLVVAVNKMDLVDY 175 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHHhCCCceEEEEEeeccccc
Confidence 9999999999999999999999999999999999999987 45789999999999999889999999999987
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
++++++.+.+++..+++.+++. ..+++||+||++|+|+.++.. .++||+|++|+++|+.++++.+..+.||+|+|+
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~---~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~ 251 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSE---SMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQ 251 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccc---cccccchhhHHHHHhhcCCCCCCCCCCceeeEE
Confidence 7778888888888888777742 357899999999999987653 479999999999999998887788899999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCC
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
++++.. ...- +.|+|.+|.|++||+|+++|.+..++|++|++++.+++.|.|||+|+|.|++ ..++++|+|||+++
T Consensus 252 ~v~~~~~~~~g-~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~ 328 (474)
T PRK05124 252 YVNRPNLDFRG-YAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAAD 328 (474)
T ss_pred EEEecCCcccc-eEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCC
Confidence 998764 1122 5899999999999999999999999999999999999999999999999985 46799999999998
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEE
Q 005973 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTS 659 (666)
Q Consensus 580 ~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ 659 (666)
.++..++.|+|++.||+ +.||.+|++++||+|+.+++|+|..|..++|.+||+. .+|.+|++|+.|.|+|++++|||
T Consensus 329 ~~~~~~~~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~pv~ 405 (474)
T PRK05124 329 EALQAVQHASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDEPLV 405 (474)
T ss_pred CCCccceEEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECCeec
Confidence 88888999999999998 7899999999999999999999999999999999985 46899999999999999999999
Q ss_pred eeeccCC
Q 005973 660 FQYYFVC 666 (666)
Q Consensus 660 ve~~~~~ 666 (666)
+|+|.+|
T Consensus 406 ~e~~~~~ 412 (474)
T PRK05124 406 LDPYQQN 412 (474)
T ss_pred cccCCcC
Confidence 9999874
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.3e-60 Score=549.28 Aligned_cols=384 Identities=29% Similarity=0.472 Sum_probs=352.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCC--CcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~--g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
+..++|+|+||+|+|||||+++|++..+.+..+.+.++.+.+...|. ++|.|+|.+|..++|+++|+|++..+..+++
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 45688999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
++.+++|+|||||++|..++..++..+|++|||||+..| +..|+++|+.++..++++++|||+||||+++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 999999999999999999999999999999999999987 457899999999999988899999999999877
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEe
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~ 501 (666)
+++++.+..++..+++.++| ..++++|+||++|.|+.+... .++||.|++|+++|+.++++.+..++||+|+|.+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~ 248 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSA---RMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQY 248 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCcccccc---CCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEE
Confidence 78888888899988888888 357899999999999987553 3799999999999999988777788999999999
Q ss_pred EeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
+++.. .+.- +.|+|.+|+|++||+|.++|.+..++|++|++++.+++.|.|||+|+|.|++ ..++++|+|||+++.
T Consensus 249 v~~~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 249 VNRPNLDFRG-FAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADN 325 (632)
T ss_pred EEecCCCceE-EEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCC
Confidence 98764 2222 6899999999999999999999999999999999999999999999999984 467999999999998
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005973 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSF 660 (666)
Q Consensus 581 p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~v 660 (666)
+++.++.|+|++.||++ .|+..|++++||+|+.+++|+|..|..++|.+|++. ++|++|++|+.|.|+|++++|||+
T Consensus 326 ~~~~~~~f~a~i~~l~~-~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~pi~~ 402 (632)
T PRK05506 326 RPEVADQFDATVVWMAE-EPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDAPIAF 402 (632)
T ss_pred CCcceeEEEEEEEEecc-cccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECCEEee
Confidence 88889999999999985 578899999999999999999999999999999884 789999999999999999999999
Q ss_pred eeccCC
Q 005973 661 QYYFVC 666 (666)
Q Consensus 661 e~~~~~ 666 (666)
|.|.+|
T Consensus 403 e~~~~~ 408 (632)
T PRK05506 403 DPYARN 408 (632)
T ss_pred eecccc
Confidence 999874
No 12
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.1e-56 Score=493.81 Aligned_cols=369 Identities=28% Similarity=0.430 Sum_probs=322.4
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
+..+.+++|+++||+|||||||+++|++..+.+..... +.++ .+|...+|+++|+|++.....|+
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~~-~~d~~~~e~~rg~T~~~~~~~~~ 71 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKYD-EIDSAPEEKARGITINTAHVEYE 71 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cccc-cccCChhhhcCCEeEEccEEEEc
Confidence 34567899999999999999999999988776643322 1122 58899999999999999999999
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
.++.+++|+|||||.+|...++.++..+|++|+|||+..+ +..|+++|+.++..+|+|++|+|+||||+++.
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 9999999999999999999999999999999999999987 46799999999999999988899999999853
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCc--cccccCCc-ccHHHHhhhc-CCCCCCCCCCce
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG--RLLSWYKG-PCLLDAIDSL-RPPPREFSKPLL 496 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~--~~~~Wy~g-~~LL~~L~~l-~~~~~~~~~p~~ 496 (666)
.+.++.+.+++..+|+.+++....++++|+||++|+|+....... ...+||++ ++|+++|+.+ ++|.++.+.||+
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r 222 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFL 222 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEE
Confidence 446777888999999999987667899999999999986533210 12489985 9999999774 556677889999
Q ss_pred eeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC--CceEEEeeeeecCcccceeccCCceeEEeeccCcCcccccc
Q 005973 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (666)
Q Consensus 497 ~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~ 573 (666)
|+|+++|.++ .|+| ++|+|.+|+|++||.|.+.|. +..++|++|++++.+++.|.|||+|+|.|++++..++++|+
T Consensus 223 ~~I~~v~~~~g~G~V-v~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 223 MAIEDVFSITGRGTV-ATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEeCCCeEE-EEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 9999999998 8988 999999999999999998874 46789999999999999999999999999999889999999
Q ss_pred EEecCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeE
Q 005973 574 VLCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSA 648 (666)
Q Consensus 574 VL~~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a 648 (666)
||++++. +..++.|+|++.+|++ +.||.+|+++++|+|+.+++|+|..|... . .+.|++|++|+.|
T Consensus 302 vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRI 372 (409)
T ss_pred EEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEE
Confidence 9999875 4558999999999997 68999999999999999999999988643 1 2578899999999
Q ss_pred EEEEEeCceEEeeec
Q 005973 649 IVEVNQSQNTSFQYY 663 (666)
Q Consensus 649 ~v~l~l~~pI~ve~~ 663 (666)
.|+|++.+|+|+|++
T Consensus 373 ~v~l~~~~pi~~e~~ 387 (409)
T CHL00071 373 KMTVELIYPIAIEKG 387 (409)
T ss_pred EEEEEECCeEEEeeC
Confidence 999999999999975
No 13
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=8.5e-57 Score=499.70 Aligned_cols=367 Identities=28% Similarity=0.428 Sum_probs=322.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
..+.+++|+++||+|+|||||+++|++.++.+.....++ ...+|...+|+.+|+|++.....|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 346789999999999999999999998877665443221 12589999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
++..++|||||||++|+.+++.++..+|++||||||..| +.+|+++|+.++..+|+|++||++||||+++ .
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~ 212 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-D 212 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccC-H
Confidence 999999999999999999999999999999999999988 4689999999999999998899999999985 3
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCC--CccccccCC-cccHHHHhhhc-CCCCCCCCCCcee
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD--DGRLLSWYK-GPCLLDAIDSL-RPPPREFSKPLLM 497 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~--~~~~~~Wy~-g~~LL~~L~~l-~~~~~~~~~p~~~ 497 (666)
++.++.+.+++..+|+.++|....++++|+||++|.|+..... .....+||+ +++|+++|+.+ ++|.+..++||+|
T Consensus 213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~ 292 (478)
T PLN03126 213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLL 292 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceee
Confidence 4557778889999999999977789999999999988742110 001248997 57899999875 4566777899999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC--ceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccE
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~V 574 (666)
+|+++|+++ .|+| ++|+|.+|.|++||.|+++|.+ ..++|++|+.++.+++.|.|||+|+|.|++++..++++|+|
T Consensus 293 ~I~~vf~v~g~GtV-v~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~V 371 (478)
T PLN03126 293 AVEDVFSITGRGTV-ATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 371 (478)
T ss_pred EEEEEEEeCCceEE-EEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccE
Confidence 999999998 9998 8999999999999999999986 47899999999999999999999999999999999999999
Q ss_pred EecCCCCcceeeEEEEEEEEecCC-----CCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEE
Q 005973 575 LCHPDFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (666)
Q Consensus 575 L~~~~~p~~~~~~F~a~i~vl~~~-----~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~ 649 (666)
||+++. ++..+.|+|++.||++. .||..||++.+|+|+.+++|+|..|...+| +.|++|++|+.|.
T Consensus 372 L~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a~ 442 (478)
T PLN03126 372 LAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRVK 442 (478)
T ss_pred EecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEEE
Confidence 999875 44579999999999974 699999999999999999999999976543 3578999999999
Q ss_pred EEEEeCceEEeee
Q 005973 650 VEVNQSQNTSFQY 662 (666)
Q Consensus 650 v~l~l~~pI~ve~ 662 (666)
|+|+|.+|+|+|.
T Consensus 443 v~l~~~~Pi~~~~ 455 (478)
T PLN03126 443 MVVELIVPVACEQ 455 (478)
T ss_pred EEEEECCeEEEcc
Confidence 9999999999986
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.2e-56 Score=491.50 Aligned_cols=358 Identities=30% Similarity=0.429 Sum_probs=315.0
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
++.+++++|+++||+|||||||+++|++... ..|++.+...+.+|...+|+++|+|++.....++
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~ 71 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE 71 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEc
Confidence 4456789999999999999999999996321 2345555545689999999999999999999998
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
.++.+++|+|||||.+|..+++.++..+|++|||||+..+ +..|+++|+.++..+++|++|+|+||||+.+
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~- 142 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcc-
Confidence 8889999999999999999999999999999999999987 3579999999999999996667899999985
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhhc-CCCCCCCCCCceee
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDSL-RPPPREFSKPLLMP 498 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~l-~~~~~~~~~p~~~~ 498 (666)
.++.++.+..++..+++.+++...+++++++||++|.|... .+.||.+ ++|+++|+++ ++|.+..++||+|+
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~------~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDD------DEEWEAKILELMDAVDSYIPEPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCC------CCcccccHHHHHHHHHhcCCCCCccCCCCeEEE
Confidence 34556777788999999888865568999999999999732 3789965 8999999874 55667788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC--ceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEE
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
|+++|+++ .|+| ++|+|.+|+|++||+|+++|.+ ..++|++|++++++++.|.|||+|+|.|+|++..++++|+||
T Consensus 217 I~~~f~v~g~Gtv-v~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl 295 (396)
T PRK12735 217 IEDVFSISGRGTV-VTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVL 295 (396)
T ss_pred EEEEEecCCceEE-EEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEE
Confidence 99999998 8988 9999999999999999999974 678999999999999999999999999999999999999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEE
Q 005973 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (666)
Q Consensus 576 ~~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v 650 (666)
|+++. +..++.|+|++.+|++ +.||..||++++|+|+.+++|+|.. .++|.+|++|+.|.|
T Consensus 296 ~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 361 (396)
T PRK12735 296 AKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKM 361 (396)
T ss_pred EcCCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEE
Confidence 99874 4457999999999997 5899999999999999999999831 235788999999999
Q ss_pred EEEeCceEEeeec
Q 005973 651 EVNQSQNTSFQYY 663 (666)
Q Consensus 651 ~l~l~~pI~ve~~ 663 (666)
+|+|++|+|+|++
T Consensus 362 ~l~~~~p~~~~~~ 374 (396)
T PRK12735 362 TVELIAPIAMEEG 374 (396)
T ss_pred EEEECceEEEeEC
Confidence 9999999999975
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=5e-56 Score=486.31 Aligned_cols=358 Identities=30% Similarity=0.438 Sum_probs=313.4
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
+..+.+++|+++||+|||||||+++|++.. ...|++.....+.+|...+|+++|+|++.....+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~ 71 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE 71 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhh---------------hhccCCcccchhhccCChHHHhcCeEEeeeEEEEc
Confidence 345678999999999999999999999642 11233333333479999999999999999999998
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..+.+++|+|||||.+|..++..++..+|++|+|||+..+ +..|+++|+.++..+++|.+||++||||+++
T Consensus 72 ~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~- 142 (396)
T PRK00049 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcc-
Confidence 8899999999999999999999999999999999999987 4679999999999999995567999999985
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhh-cCCCCCCCCCCceee
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMP 498 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~-l~~~~~~~~~p~~~~ 498 (666)
.++.++.+..++..+++.+++...+++++|+||++|.+.. ..++||++ ++|+++|+. +++|.+..++||+|+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~------~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD------DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCC------CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 3455677778899999998887677899999999997732 24799976 899999987 556777788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC--CceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEE
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
|+++|+++ .|+| ++|+|.+|+|++||+|.++|. +..++|++|++++.+++.|.|||+|+|.|+|++..++++|+||
T Consensus 217 I~~~f~v~g~G~V-v~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl 295 (396)
T PRK00049 217 IEDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVL 295 (396)
T ss_pred EEEEEeeCCceEE-EEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEE
Confidence 99999998 9988 899999999999999999987 6789999999999999999999999999999998999999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEE
Q 005973 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (666)
Q Consensus 576 ~~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v 650 (666)
|+++. ++.++.|+|++.+|++ ++||..||++++|+|+.+++|+| .+ +++|++|++|+.|.|
T Consensus 296 ~~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i-~l------------~~~~~~l~~g~~a~v 361 (396)
T PRK00049 296 AKPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVI-EL------------PEGVEMVMPGDNVEM 361 (396)
T ss_pred ecCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEE-Ee------------cCCCcccCCCCEEEE
Confidence 99874 4457999999999997 68999999999999999999998 22 236789999999999
Q ss_pred EEEeCceEEeeec
Q 005973 651 EVNQSQNTSFQYY 663 (666)
Q Consensus 651 ~l~l~~pI~ve~~ 663 (666)
+|++.+|+|+|++
T Consensus 362 ~i~~~~p~~~e~~ 374 (396)
T PRK00049 362 TVELIAPIAMEEG 374 (396)
T ss_pred EEEECceEEEeeC
Confidence 9999999999975
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.6e-56 Score=486.55 Aligned_cols=356 Identities=29% Similarity=0.439 Sum_probs=312.5
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
+..+++++|+++||+|||||||+++|++.. ...|++.+...+.+|.+++|+++|+|++.....+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~ 71 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVL---------------AERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE 71 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhh---------------hhhccccccchhhhcCCHHHHhcCccEEEEeeEec
Confidence 345678999999999999999999998421 12355555545589999999999999999999998
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
.++..++|||||||++|+.+++.++..+|++|||||+..+ +..|+++|+.++..+|+|++|+|+||||+++
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~- 142 (394)
T PRK12736 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVD- 142 (394)
T ss_pred CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcc-
Confidence 8889999999999999999999999999999999999987 4679999999999999998889999999974
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhh-cCCCCCCCCCCceee
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMP 498 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~-l~~~~~~~~~p~~~~ 498 (666)
+++.++.+.+++..+++..++....++++++||++|.+. ...||.+ ++|+++|.. ++++.+..++||+|+
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~--------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~ 214 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEG--------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMP 214 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccC--------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 244566677889999998888766789999999999543 1479964 889999976 566777788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC--CceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEE
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
|+++|.++ .|+| ++|+|.+|+|++||+|+++|. +..++|++|++++++++.|.|||+|+|+|+|++..++++|+||
T Consensus 215 I~~~~~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 215 VEDVFTITGRGTV-VTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEEEEecCCcEEE-EEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 99999998 9998 999999999999999999998 5679999999999999999999999999999998999999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEE
Q 005973 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (666)
Q Consensus 576 ~~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v 650 (666)
|+++.+ ..++.|+|++.+|++ ++||..||++++|+|+.+++|+|.. .++|.+|++|+.|.|
T Consensus 294 ~~~~~~-~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 359 (394)
T PRK12736 294 AKPGSI-KPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTI 359 (394)
T ss_pred ecCCCC-CcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEE
Confidence 998754 457899999999987 4899999999999999999999831 236788999999999
Q ss_pred EEEeCceEEeeec
Q 005973 651 EVNQSQNTSFQYY 663 (666)
Q Consensus 651 ~l~l~~pI~ve~~ 663 (666)
+|+|.+|+|+|++
T Consensus 360 ~l~~~~p~~~~~~ 372 (394)
T PRK12736 360 TVELIHPIAMEQG 372 (394)
T ss_pred EEEECceEEEeeC
Confidence 9999999999975
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.6e-55 Score=482.54 Aligned_cols=356 Identities=30% Similarity=0.435 Sum_probs=312.3
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
...+++++|+++||+|+|||||+++|++.. ...|++.+...+.+|...+|+++|+|++.....++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~ 71 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE 71 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhH---------------HHhhcccccccccccCCHHHHhcCcceeeEEEEEc
Confidence 345678999999999999999999998531 12455555556789999999999999999999998
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..+.+++|||||||++|..+++.++..+|++|||||+..+ +..|+++|+.++..+++|++|+|+||||++++
T Consensus 72 ~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCH
Confidence 8889999999999999999999999999999999999987 46799999999999999977789999999853
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhhc-CCCCCCCCCCceee
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDSL-RPPPREFSKPLLMP 498 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~l-~~~~~~~~~p~~~~ 498 (666)
++.++.+.+++..+++..++...+++++++||++|.+. ...||++ ++|+++|+.+ ++|.+..++||+|+
T Consensus 144 -~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g--------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 144 -EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG--------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccccc--------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 34566677889999998888766689999999998653 1579974 8899999875 45667788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC--CceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEE
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
|+++|+++ .|+| ++|+|.+|+|++||+|++.|. +..++|++|++++.+++.|.|||+|+|.|+|++..++++|+||
T Consensus 215 V~~vf~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 215 IEDVFSITGRGTV-VTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEEEEeeCCceEE-EEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 99999999 9988 899999999999999999985 5689999999999999999999999999999988899999999
Q ss_pred ecCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEE
Q 005973 576 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (666)
Q Consensus 576 ~~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v 650 (666)
|+++.+ ..++.|+|++.||++ ++||..|+++.+|+|+.+++|+|.. .++|.+|++|+.|.|
T Consensus 294 ~~~~~~-~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 359 (394)
T TIGR00485 294 AKPGSI-KPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITL-------------PEGVEMVMPGDNVKM 359 (394)
T ss_pred ecCCCC-CcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEe-------------cCCcceeCCCCEEEE
Confidence 998654 457999999999997 4799999999999999999999962 235788999999999
Q ss_pred EEEeCceEEeeec
Q 005973 651 EVNQSQNTSFQYY 663 (666)
Q Consensus 651 ~l~l~~pI~ve~~ 663 (666)
+|+|++|+|+|++
T Consensus 360 ~~~~~~p~~~~~~ 372 (394)
T TIGR00485 360 TVELISPIALEQG 372 (394)
T ss_pred EEEECceEEEeEC
Confidence 9999999999975
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.1e-54 Score=474.54 Aligned_cols=355 Identities=29% Similarity=0.450 Sum_probs=305.9
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhh-cccccccccccCeEEEEEEEEE
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW-ALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~-~~d~~~~e~~~GiTid~~~~~~ 339 (666)
...+++++|+++||+|||||||+++|++.. ...|+.. ..+| .+|..++|+++|+|++.....|
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~ 119 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEY 119 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEE
Confidence 345678999999999999999999997321 1122221 1222 5899999999999999999999
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
+.++.+++|+|||||.+|+.+++.++..+|++|||||+..+ +..|+++|+.++..+|+|++|+|+||||+++
T Consensus 120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 99999999999999999999999999999999999999987 4679999999999999997789999999985
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc---CCCcccCCCCccccccCCcccHHHHhhhc-CCCCCCCCCCc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDSL-RPPPREFSKPL 495 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t---G~nI~e~~~~~~~~~Wy~g~~LL~~L~~l-~~~~~~~~~p~ 495 (666)
. ++.++.+.+++..++..++|....++++|+||++ |.|+. ..|..+++|+++|+.+ ++|.+..++||
T Consensus 192 ~-~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~Ll~~l~~~lp~p~r~~~~pf 262 (447)
T PLN03127 192 D-EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILKLMDAVDEYIPEPVRVLDKPF 262 (447)
T ss_pred H-HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHHHHHHHHHhCCCCCcccccce
Confidence 2 3456666678888888888866678999998874 44431 3466678999999765 55777788999
Q ss_pred eeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC----CceEEEeeeeecCcccceeccCCceeEEeeccCcCccc
Q 005973 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS----GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~----~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
+|+|+++|+++ .|+| ++|+|.+|.|++||.|.++|. +..++|++|++++.+++.|.|||+|+|.|+|++..+++
T Consensus 263 r~~I~~vf~v~g~GtV-vtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~ 341 (447)
T PLN03127 263 LMPIEDVFSIQGRGTV-ATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQ 341 (447)
T ss_pred EeeEEEEEEcCCceEE-EEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCC
Confidence 99999999998 9988 999999999999999999975 35789999999999999999999999999999999999
Q ss_pred cccEEecCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCC
Q 005973 571 SGGVLCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAK 645 (666)
Q Consensus 571 ~G~VL~~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g 645 (666)
+|+|||+++. +..+++|+|++.+|++ .+||..||++++|+|+.+++|+|.. .++|++|++|
T Consensus 342 rG~Vl~~~~~-~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~g 407 (447)
T PLN03127 342 RGQVICKPGS-IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPG 407 (447)
T ss_pred CccEEecCCC-CceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCC
Confidence 9999999864 5678999999999997 4899999999999999999999941 2468899999
Q ss_pred CeEEEEEEeCceEEeeec
Q 005973 646 QSAIVEVNQSQNTSFQYY 663 (666)
Q Consensus 646 ~~a~v~l~l~~pI~ve~~ 663 (666)
+.|.|+|+|.+|+|+|..
T Consensus 408 d~a~v~l~~~~p~~le~g 425 (447)
T PLN03127 408 DNVTAVFELISPVPLEPG 425 (447)
T ss_pred CEEEEEEEECceEEEeeC
Confidence 999999999999999975
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-50 Score=406.40 Aligned_cols=356 Identities=30% Similarity=0.461 Sum_probs=307.7
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE
Q 005973 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 260 ~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~ 339 (666)
.+..+.+.||+.|||+|+|||||..+|+..+. ..+...+.--...|..++|+++||||+.+...+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahvey 70 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVEY 70 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeEE
Confidence 34556789999999999999999999984322 122222222233677899999999999999999
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
++.++++-.+|+|||.+|+++|+.++.++|++||||.|.+| +++||++|+.+++..|+|++|+++||+|+++
T Consensus 71 et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 99999999999999999999999999999999999999998 6899999999999999999999999999997
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhh-cCCCCCCCCCCcee
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~-l~~~~~~~~~p~~~ 497 (666)
+++.++.+..++..+|..++|.....|++.-||+.--.-. ..|... ..|+++++. ++.|.++.++||+|
T Consensus 143 -d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~--------~~~~~~i~eLm~avd~yip~Per~~dkPflm 213 (394)
T COG0050 143 -DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGD--------AKWEAKIEELMDAVDSYIPTPERDIDKPFLM 213 (394)
T ss_pred -cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCC--------cchHHHHHHHHHHHHhcCCCCCCcccccccc
Confidence 5788888999999999999999889999988886432211 235433 568999955 67888999999999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC--ceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccE
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~V 574 (666)
+|.++|++. +|++ ++|||++|+|++|+.+.+.... ++..|.+|+++++..+++.|||+|++.|+|+...++.||+|
T Consensus 214 pvEdvfsIsgrgtv-vtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 214 PVEDVFSISGRGTV-VTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred cceeeEEEcCceeE-EEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceE
Confidence 999999999 9999 9999999999999999987544 46789999999999999999999999999999999999999
Q ss_pred EecCCCCcceeeEEEEEEEEec-----CCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEE
Q 005973 575 LCHPDFPVAIATHLELKVLVLD-----FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (666)
Q Consensus 575 L~~~~~p~~~~~~F~a~i~vl~-----~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~ 649 (666)
|+.|+. ...+.+|+|++++|. ..+|+..||++.||+.+..+++.+. + .++...+.+|+.+.
T Consensus 293 Lakpgs-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~-l------------~eg~emvmpgdnv~ 358 (394)
T COG0050 293 LAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAIT-L------------PEGVEMVMPGDNVK 358 (394)
T ss_pred eecCCc-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEe-c------------cCCcceecCCCceE
Confidence 999987 556899999999997 4599999999999999999988543 2 12345799999999
Q ss_pred EEEEeCceEEeee
Q 005973 650 VEVNQSQNTSFQY 662 (666)
Q Consensus 650 v~l~l~~pI~ve~ 662 (666)
+.++|..||++|+
T Consensus 359 ~~veLi~pia~e~ 371 (394)
T COG0050 359 MVVELIHPIAMEE 371 (394)
T ss_pred EEEEEeeeeecCC
Confidence 9999999999986
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-50 Score=410.30 Aligned_cols=354 Identities=31% Similarity=0.468 Sum_probs=306.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
..+.+.||+.|||+++|||||..+++.-+.. .|.-.|.--.-.|..++|+.|||||+.....+++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~---------------~g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAE---------------KGGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHh---------------ccccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 3467899999999999999999999843221 1222222123468889999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
..+++--+|+|||.+|+++|+.++.+.|++||||.|++| .++||+||+.++++.|+++++|.+||.|+++ +
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d 185 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQVGVKHIVVFINKVDLVD-D 185 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHcCCceEEEEEecccccC-C
Confidence 999999999999999999999999999999999999998 5899999999999999999999999999996 4
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc---CCCcccCCCCccccccCCcccHHHHhhh-cCCCCCCCCCCcee
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLLM 497 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t---G~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~~~~~p~~~ 497 (666)
++.++-+.-+++++|..++|+..+.|+|.-||+. |.+- ++ ..-.-..||+++++ +|.|.|+.++||.|
T Consensus 186 ~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~p-ei-------g~~aI~kLldavDsyip~P~R~~~~pFl~ 257 (449)
T KOG0460|consen 186 PEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQP-EI-------GLEAIEKLLDAVDSYIPTPERDLDKPFLL 257 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCc-cc-------cHHHHHHHHHHHhccCCCcccccCCCcee
Confidence 6778888899999999999999999999988763 3211 00 00001348889876 78899999999999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc--eEEEeeeeecCcccceeccCCceeEEeeccCcCccccccE
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~--~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~V 574 (666)
+|.++|.++ +|+| ++|+|++|.|++|+++.+...++ +.+|..|+++++.+++|.|||++++-|+|+...+++||||
T Consensus 258 pie~vfsI~GRGTV-vtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmv 336 (449)
T KOG0460|consen 258 PIEDVFSIPGRGTV-VTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMV 336 (449)
T ss_pred ehhheeeecCCceE-EEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccE
Confidence 999999999 9999 99999999999999999886554 6789999999999999999999999999999999999999
Q ss_pred EecCCCCcceeeEEEEEEEEec-----CCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEE
Q 005973 575 LCHPDFPVAIATHLELKVLVLD-----FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (666)
Q Consensus 575 L~~~~~p~~~~~~F~a~i~vl~-----~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~ 649 (666)
+|.|+. +....+|+|++++|. ..+|+..+|++++|..++.++++|.-... -.++.||+.+.
T Consensus 337 l~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~~-------------~~mvMPGe~~~ 402 (449)
T KOG0460|consen 337 LAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPPE-------------KEMVMPGENVK 402 (449)
T ss_pred EecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccCh-------------HhcccCCCCeE
Confidence 999998 777899999999997 46999999999999999999999863311 24799999999
Q ss_pred EEEEeCceEEeee
Q 005973 650 VEVNQSQNTSFQY 662 (666)
Q Consensus 650 v~l~l~~pI~ve~ 662 (666)
+++.|.+|+++|.
T Consensus 403 ~~~~Li~pm~le~ 415 (449)
T KOG0460|consen 403 VEVTLIRPMPLEK 415 (449)
T ss_pred EEEEEecccccCC
Confidence 9999999999885
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=430.67 Aligned_cols=305 Identities=24% Similarity=0.337 Sum_probs=263.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe---
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--- 340 (666)
+..++|+++||++||||||+++|++. ..+.+.+|.++|+|++.++..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~----------------------------~~~r~~~E~~rGiTi~lGfa~~~~~~ 83 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGV----------------------------KTVRFKREKVRNITIKLGYANAKIYK 83 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCC----------------------------CcccchhhHHhCCchhcccccccccc
Confidence 45789999999999999999999932 34667889999999998887552
Q ss_pred ------------cC------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccch
Q 005973 341 ------------SK------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAK 390 (666)
Q Consensus 341 ------------~~------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~ 390 (666)
.. .+.++|+|||||++|.++|+.++..+|++||||||.++. .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~ 156 (460)
T PTZ00327 84 CPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQ 156 (460)
T ss_pred CcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cc
Confidence 11 247899999999999999999999999999999999752 35
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccc
Q 005973 391 GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLS 470 (666)
Q Consensus 391 ~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~ 470 (666)
+|+++|+.++..+|++++|||+||||+++ .+++++..+++..+++.... ..+++||+||++|+|+.
T Consensus 157 ~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~---------- 222 (460)
T PTZ00327 157 PQTSEHLAAVEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNID---------- 222 (460)
T ss_pred hhhHHHHHHHHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHH----------
Confidence 79999999999999998999999999984 34555566667666654332 45789999999999994
Q ss_pred cCCcccHHHHhh-hcCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCC-------
Q 005973 471 WYKGPCLLDAID-SLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSG------- 533 (666)
Q Consensus 471 Wy~g~~LL~~L~-~l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~------- 533 (666)
.|+++|. .++++.++.+.||+|+|+++|.+. .|+| ++|+|.+|+|++||+|.++|++
T Consensus 223 -----~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtV-v~G~v~~G~l~~Gd~v~i~P~~~~~~~~g 296 (460)
T PTZ00327 223 -----VVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGV-AGGSILQGVLKVGDEIEIRPGIISKDSGG 296 (460)
T ss_pred -----HHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEE-EEEEEeeceEecCCEEEEccCcccccccC
Confidence 4999997 677777888899999999888654 4778 8999999999999999999975
Q ss_pred ------ceEEEeeeeecCcccceeccCCceeEEee---ccCcCccccccEEecCCCCcceeeEEEEEEEEecCC------
Q 005973 534 ------EVGTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA------ 598 (666)
Q Consensus 534 ------~~~~VksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~~------ 598 (666)
..++|++||+++.++++|.|||+|+|.|+ +++..++.+|+||++++.+++..+.|+|++.||.+.
T Consensus 297 ~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~ 376 (460)
T PTZ00327 297 EFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQ 376 (460)
T ss_pred ccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccccc
Confidence 35799999999999999999999999987 788889999999999988777788999999999862
Q ss_pred --------CCccCCCEEEEEEeeceEEEEEEEE
Q 005973 599 --------PPILIGSQLECHIHHAKEAARIVKI 623 (666)
Q Consensus 599 --------~pi~~G~~~~l~i~~~~~~a~I~~i 623 (666)
.||..|+++.||+|+.+++|+|..|
T Consensus 377 ~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i 409 (460)
T PTZ00327 377 DGKKATKVAKLKKGESLMINIGSTTTGGRVVGI 409 (460)
T ss_pred ccccccCCcccCCCCEEEEEecccEEEEEEEEe
Confidence 7999999999999999999999876
No 22
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=5.7e-46 Score=408.41 Aligned_cols=307 Identities=27% Similarity=0.413 Sum_probs=258.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
..++.++|+++||+|+|||||+++|.+ ..+|...+|+++|+|++.++..+.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~----------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTG----------------------------VWTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhC----------------------------eecccCHhHHhcCcEEEeccccccc
Confidence 345679999999999999999999962 1367788899999999987654332
Q ss_pred C--------------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHH
Q 005973 342 K--------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (666)
Q Consensus 342 ~--------------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e 395 (666)
. .+.++|||||||.+|..+++.++..+|++|+|||+.++. ...++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~ 129 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-------PQPQTKE 129 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHH
Confidence 1 267999999999999999999999999999999999762 1468889
Q ss_pred HHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcc
Q 005973 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGP 475 (666)
Q Consensus 396 ~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~ 475 (666)
++.++..++++++|+|+||+|+.+. ++.....+++..+++... ...++++++||++|+|+.+
T Consensus 130 ~l~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~-------------- 191 (411)
T PRK04000 130 HLMALDIIGIKNIVIVQNKIDLVSK--ERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA-------------- 191 (411)
T ss_pred HHHHHHHcCCCcEEEEEEeeccccc--hhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH--------------
Confidence 9999999998779999999999853 233233344555554321 1346899999999999954
Q ss_pred cHHHHhhh-cCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc-----------
Q 005973 476 CLLDAIDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE----------- 534 (666)
Q Consensus 476 ~LL~~L~~-l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~----------- 534 (666)
|++.|.. ++++.+..++||+|+|+++|.++ .|+| ++|+|.+|+|++||.|.++|.+.
T Consensus 192 -L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~ 269 (411)
T PRK04000 192 -LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEP 269 (411)
T ss_pred -HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceE-EEEEEEeCEEecCCEEEEcCCcceeccccccccc
Confidence 8999866 56666777899999999999664 3557 89999999999999999999863
Q ss_pred -eEEEeeeeecCcccceeccCCceeEEee---ccCcCccccccEEecCCCCcceeeEEEEEEEEecC---------CCCc
Q 005973 535 -VGTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPI 601 (666)
Q Consensus 535 -~~~VksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~---------~~pi 601 (666)
.++|++|++++.++++|.|||+|+|+|+ +++..++++|+|||+++.+++.+..|+|++.|+.+ +.||
T Consensus 270 ~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i 349 (411)
T PRK04000 270 ITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPI 349 (411)
T ss_pred ceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCC
Confidence 5799999999999999999999999996 77778899999999999888888999999999987 6899
Q ss_pred cCCCEEEEEEeeceEEEEEEEE
Q 005973 602 LIGSQLECHIHHAKEAARIVKI 623 (666)
Q Consensus 602 ~~G~~~~l~i~~~~~~a~I~~i 623 (666)
..|++++||+|+.+++|+|..|
T Consensus 350 ~~g~~~~l~~~t~~~~~~i~~i 371 (411)
T PRK04000 350 KTGEPLMLNVGTATTVGVVTSA 371 (411)
T ss_pred CCCCEEEEEEeccEEEEEEEEc
Confidence 9999999999999999999987
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=5.3e-46 Score=425.07 Aligned_cols=297 Identities=25% Similarity=0.373 Sum_probs=261.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-CCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~~~ 345 (666)
+.|+++||+|+|||||+++|++. .+|...+|+++|+|++..+..+.. ++..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~----------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV----------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----------------------------CCccchhcccCCceEEeeeEEEecCCCcE
Confidence 35899999999999999999831 246678889999999999888866 4677
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
+.|||||||++|.++|+.++..+|++|||||+.++ +++|+++|+.++..++++++|||+||||+++ ++++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg--------~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~--~~~~ 122 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG--------VMAQTREHLAILQLTGNPMLTVALTKADRVD--EARI 122 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCccCC--HHHH
Confidence 89999999999999999999999999999999987 5689999999999999997789999999983 5667
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEeEeec
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKS 505 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~v~~~ 505 (666)
+.+.+++..++...++. ..++|++||++|+|+.+ |+++|..++.+.+..++||+|+|+++|.+
T Consensus 123 ~~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~---------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDA---------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHH---------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 77788888888777663 46899999999999954 99999888777667789999999999999
Q ss_pred C-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeec-cCcCccccccEEecCCCCcc
Q 005973 506 Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQG-IDVSRVMSGGVLCHPDFPVA 583 (666)
Q Consensus 506 ~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~g-id~~~i~~G~VL~~~~~p~~ 583 (666)
+ .|+| ++|+|.+|+|++||+|.+.|.+..++|++||+++.+++.|.|||+|+|.|+| ++..++++|+|||+++. +.
T Consensus 186 ~G~GtV-vtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~-~~ 263 (614)
T PRK10512 186 KGAGLV-VTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAP-PE 263 (614)
T ss_pred CCCeEE-EEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCC-Cc
Confidence 8 9998 9999999999999999999999999999999999999999999999999997 89999999999999853 33
Q ss_pred eeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEE
Q 005973 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKI 623 (666)
Q Consensus 584 ~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i 623 (666)
....+ ++++....||..|++++||+|+.++.|+|..|
T Consensus 264 ~~~~~---~~~l~~~~~l~~~~~~~~~~gt~~~~~~i~~l 300 (614)
T PRK10512 264 PFTRV---IVELQTHTPLTQWQPLHIHHAASHVTGRVSLL 300 (614)
T ss_pred cceeE---EEEEcCCccCCCCCEEEEEEcccEEEEEEEEc
Confidence 34444 44556678999999999999999999999876
No 24
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=7.2e-46 Score=407.58 Aligned_cols=305 Identities=28% Similarity=0.431 Sum_probs=257.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
+..++|+++||+|+|||||+++|++. .+|...+|+++|+|+..++..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~----------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe----------------------------ecccCHhHHHcCceeEeccccccccc
Confidence 46789999999999999999999721 257778888999999988665431
Q ss_pred ------------------------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH
Q 005973 342 ------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (666)
Q Consensus 342 ------------------------~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l 397 (666)
.+..++|||||||++|..+++.++..+|++|||||+.++. ...|+.+|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l 126 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHL 126 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHH
Confidence 1467999999999999999999999999999999999862 146899999
Q ss_pred HHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccH
Q 005973 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 477 (666)
Q Consensus 398 ~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~L 477 (666)
.++..++++++|+|+||+|+++. +......+++..+++... ...++++++||++|+|+.+ |
T Consensus 127 ~~l~~~gi~~iIVvvNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~---------------L 187 (406)
T TIGR03680 127 MALEIIGIKNIVIVQNKIDLVSK--EKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA---------------L 187 (406)
T ss_pred HHHHHcCCCeEEEEEEccccCCH--HHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH---------------H
Confidence 99999999889999999999852 222233345555554332 1356899999999999954 8
Q ss_pred HHHhhh-cCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc------------e
Q 005973 478 LDAIDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------V 535 (666)
Q Consensus 478 L~~L~~-l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~------------~ 535 (666)
+++|.. ++.+.++.++||+|+|+++|.++ +|+| +.|+|.+|+|++||.|.++|++. .
T Consensus 188 ~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 188 LEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeE-EEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 999976 56677778899999999999654 3557 89999999999999999999852 4
Q ss_pred EEEeeeeecCcccceeccCCceeEEee---ccCcCccccccEEecCCCCcceeeEEEEEEEEecC---------CCCccC
Q 005973 536 GTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPILI 603 (666)
Q Consensus 536 ~~VksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~---------~~pi~~ 603 (666)
++|++|++++.++++|.|||+|+|.|+ +++..++++|+|||+++.+++.+..|+|++.|+.+ +.||..
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 78888999999999998877788999999999975 489999
Q ss_pred CCEEEEEEeeceEEEEEEEE
Q 005973 604 GSQLECHIHHAKEAARIVKI 623 (666)
Q Consensus 604 G~~~~l~i~~~~~~a~I~~i 623 (666)
|+++.+|+|+.+++|+|..+
T Consensus 347 g~~~~l~~gt~~~~~~v~~~ 366 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSA 366 (406)
T ss_pred CCEEEEEEccceEEEEEEEc
Confidence 99999999999999999876
No 25
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=4.3e-44 Score=408.19 Aligned_cols=322 Identities=27% Similarity=0.409 Sum_probs=271.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++||+|||||||+++|++. .++...+|+.+|+|++..+..+..++..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999832 13556678889999999999999988999
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhh
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~ 426 (666)
.|||||||++|..+|+.++..+|++|||||+.++ +++|+.+|+.++..+|+|++|||+||||+++ .++++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~--~~~~~ 122 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRVN--EEEIK 122 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCCC--HHHHH
Confidence 9999999999999999999999999999999987 4679999999999999998999999999984 45566
Q ss_pred HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEeEeecC
Q 005973 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKSQ 506 (666)
Q Consensus 427 ~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~v~~~~ 506 (666)
.+.+++..+++..++.. .++++++||++|+|+.++.. .|.+.+..+... ..+.||+|+|+++|..+
T Consensus 123 ~~~~ei~~~l~~~~~~~-~~~ii~vSA~tG~GI~eL~~-----------~L~~l~~~~~~~--~~~~p~r~~Id~~f~v~ 188 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLK-NAKIFKTSAKTGQGIGELKK-----------ELKNLLESLDIK--RIQKPLRMAIDRAFKVK 188 (581)
T ss_pred HHHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCchhHHH-----------HHHHHHHhCCCc--CcCCCcEEEEEEEEecC
Confidence 67778888887766532 47899999999999976321 122223333322 25789999999999998
Q ss_pred -CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCCC-cce
Q 005973 507 -HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP-VAI 584 (666)
Q Consensus 507 -~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p-~~~ 584 (666)
.|+| ++|+|.+|+|++||+|.++|.+..++|++||.++++++.|.|||+|+|.|+|++..++++|.+++++..+ +..
T Consensus 189 G~GtV-v~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~~~~~ 267 (581)
T TIGR00475 189 GAGTV-VTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDPKLRV 267 (581)
T ss_pred CcEEE-EEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCCCceE
Confidence 9998 9999999999999999999999999999999999999999999999999999999999999888776533 222
Q ss_pred eeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEE
Q 005973 585 ATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEV 652 (666)
Q Consensus 585 ~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l 652 (666)
...|.+ ..||..|+++.+|+|+.++.|+|..+ |.+.++...+.|.++..||.++++-
T Consensus 268 ~~~~~~-------~~~l~~~~~~~~~~gt~~~~~~i~~l----~~~~~~l~l~~P~~~~~gd~~i~r~ 324 (581)
T TIGR00475 268 VVKFIA-------EVPLLELQPYHIAHGMSVTTGKISLL----DKGIALLTLDAPLILAKGDKLVLRD 324 (581)
T ss_pred EEEEEc-------CCccCCCCeEEEEEeceEEEEEEEEc----cCcEEEEEECCceecCCCCEEEEEe
Confidence 333332 47899999999999999999998754 5567777788999999999998876
No 26
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=4.6e-45 Score=376.75 Aligned_cols=386 Identities=25% Similarity=0.363 Sum_probs=315.7
Q ss_pred CCCcccccccccccccccccccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccch
Q 005973 216 TGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQ 295 (666)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~ 295 (666)
...+.++++.|+..++........++.-.....+-.+.. .+++.+....++.|+++||+|+|||||++.|+ .|..
T Consensus 68 ~~~l~esievL~~la~evgA~i~~v~~~eg~~g~Vaev~-vrr~~~~~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~-- 142 (527)
T COG5258 68 DEKLVESIEVLRELAREVGASIYIVRVHEGTDGYVAEVL-VRRKTEEAPEHVLVGVAGHVDHGKSTLVGVLV--TGRL-- 142 (527)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEEEEeccCcEEEEEE-EEecccCCCceEEEEEeccccCCcceEEEEEE--ecCC--
Confidence 344888999998888776555444444333334444433 34666667889999999999999999999997 2322
Q ss_pred hhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-----------------------CeEEEEEeCC
Q 005973 296 KQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-----------------------NYHVVVLDSP 352 (666)
Q Consensus 296 ~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-----------------------~~~i~liDTP 352 (666)
.+|.|.. ..++|..++|-++|.|.+++++.+.+. ++-+.|+||.
T Consensus 143 -----------DDG~G~t--R~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtv 209 (527)
T COG5258 143 -----------DDGDGAT--RSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTV 209 (527)
T ss_pred -----------CCCCcch--hhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecC
Confidence 2333333 456788888989999988877765432 2457799999
Q ss_pred CccchHHHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHH
Q 005973 353 GHKDFVPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (666)
Q Consensus 353 Gh~~f~~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~ 430 (666)
||+.|++++++++ ...|+.+|||.|.+| ++..++||+-++.++++| +|||++|+|+.+ .++++.+.+
T Consensus 210 GHEpwLrTtirGL~gqk~dYglLvVaAddG--------~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~--ddr~~~v~~ 278 (527)
T COG5258 210 GHEPWLRTTIRGLLGQKVDYGLLVVAADDG--------VTKMTKEHLGIALAMELP-VIVVVTKIDMVP--DDRFQGVVE 278 (527)
T ss_pred CccHHHHHHHHHHhccccceEEEEEEccCC--------cchhhhHhhhhhhhhcCC-EEEEEEecccCc--HHHHHHHHH
Confidence 9999999999998 459999999999998 567999999999999999 999999999984 678888888
Q ss_pred HHhhhhhhcCcC--------------------CCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCC-
Q 005973 431 QLGTFLRSCGFK--------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPP- 488 (666)
Q Consensus 431 el~~~l~~~~~~--------------------~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~- 488 (666)
++..+|+..+-- ..-+|+|.+|+.+|+|++ ||+.+ ..+|...
T Consensus 279 ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld----------------lL~e~f~~Lp~rr~ 342 (527)
T COG5258 279 EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD----------------LLDEFFLLLPKRRR 342 (527)
T ss_pred HHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH----------------HHHHHHHhCCcccc
Confidence 888888754311 124688999999999984 55555 4444442
Q ss_pred CCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC----ceEEEeeeeecCcccceeccCCceeEEeec
Q 005973 489 REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQG 563 (666)
Q Consensus 489 ~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~g 563 (666)
.+...||+|+|+++|.+. +|+| +.|.|.+|.|..||+|+++|-. ..++|+||++++..++.|.||.+++++|+|
T Consensus 343 ~~d~g~flmYId~iYsVtGVGtV-vsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~g 421 (527)
T COG5258 343 WDDEGPFLMYIDKIYSVTGVGTV-VSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKG 421 (527)
T ss_pred cCCCCCeEEEEEeeEEEeeeEEE-EeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecc
Confidence 356789999999999999 9999 9999999999999999999976 378999999999999999999999999999
Q ss_pred cCcCccccccEEecCCCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccC
Q 005973 564 IDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT 643 (666)
Q Consensus 564 id~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~ 643 (666)
+....+.+||||+.+ .+|.+.++|.|++++|.|++.|..||.+++|.-+.++++++..| | + .+|+
T Consensus 422 v~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~I~aGye~v~H~etI~e~~~f~~i----d--~--------~~L~ 486 (527)
T COG5258 422 VEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHPTTIRAGYEPVFHYETIREAVYFEEI----D--K--------GFLM 486 (527)
T ss_pred cCHHHHhcceEecCC-CCchhhheecceEEEEeCCcEEecCceeeeEeeEeeheeEEEEc----c--c--------cccc
Confidence 999999999999998 66888999999999999999999999999999999999999866 3 2 3699
Q ss_pred CCCeEEEEEEeC-ceEEeee
Q 005973 644 AKQSAIVEVNQS-QNTSFQY 662 (666)
Q Consensus 644 ~g~~a~v~l~l~-~pI~ve~ 662 (666)
+|+.+.+.++|. +|-.+|+
T Consensus 487 ~GD~g~vr~~fkyrP~~v~e 506 (527)
T COG5258 487 PGDRGVVRMRFKYRPHHVEE 506 (527)
T ss_pred CCCcceEEEEEEeCchhhcc
Confidence 999999999998 7765553
No 27
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-44 Score=377.10 Aligned_cols=326 Identities=23% Similarity=0.343 Sum_probs=282.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
.|+..||+++|||||+.+|++. ..|..+++..+|+|+|.++.++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~----------------------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG----------------------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc----------------------------ccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 5899999999999999999842 467789999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhH
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
|||+|||++|+.+|+.++...|+++||||+.+| ++.||.||+.++..+|+++.|+|+||+|+++ +++.+.
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~d--~~r~e~ 123 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRVD--EARIEQ 123 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEecccccc--HHHHHH
Confidence 999999999999999999999999999999988 6899999999999999999999999999994 456555
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcC-CCCCCCCCCceeeEEeEeecC
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR-PPPREFSKPLLMPICDVLKSQ 506 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~-~~~~~~~~p~~~~I~~v~~~~ 506 (666)
..+++...+ .+ .+.+++++|+.+|+||.+ |-+.|..++ .+.++.+.||+++|+++|.++
T Consensus 124 ~i~~Il~~l---~l--~~~~i~~~s~~~g~GI~~---------------Lk~~l~~L~~~~e~d~~~~fri~IDraFtVK 183 (447)
T COG3276 124 KIKQILADL---SL--ANAKIFKTSAKTGRGIEE---------------LKNELIDLLEEIERDEQKPFRIAIDRAFTVK 183 (447)
T ss_pred HHHHHHhhc---cc--ccccccccccccCCCHHH---------------HHHHHHHhhhhhhhccCCceEEEEeeEEEec
Confidence 555554444 34 345779999999999976 667776665 467888999999999999999
Q ss_pred -CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCCCccee
Q 005973 507 -HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIA 585 (666)
Q Consensus 507 -~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~~~ 585 (666)
.|+| ++|++++|++++||++++.|.++.++|||||.+.+++++|.||++|+|+|+|++.+.|.||++|.+++.. ++.
T Consensus 184 GvGTV-VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~-~v~ 261 (447)
T COG3276 184 GVGTV-VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPL-EVT 261 (447)
T ss_pred cccEE-EEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCC-Ccc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999998865 567
Q ss_pred eEEEEEEEEec-CCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005973 586 THLELKVLVLD-FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSF 660 (666)
Q Consensus 586 ~~F~a~i~vl~-~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~v 660 (666)
..|.+.+-+.. +..|+.+|+.++||+|+..++|++..+.... + ..--+++..++...+.+++..+...
T Consensus 262 ~~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~~-----~--l~~~k~i~~~~~~~l~lr~~~a~~~ 330 (447)
T COG3276 262 TRLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKNA-----E--LNLVKPIALGDNDRLVLRDNSAVIK 330 (447)
T ss_pred eEEEEEEEeccccccccCCCceEEEEEeccccceEeeeccccc-----e--eeeecccccccCceEEEEcccceee
Confidence 88888888773 6799999999999999999999998774320 1 1122356677777777777766544
No 28
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=334.72 Aligned_cols=353 Identities=25% Similarity=0.348 Sum_probs=282.2
Q ss_pred cccccCcccccCCCC-cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccc
Q 005973 245 SHTQYKPEKWMLPDK-KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESA 323 (666)
Q Consensus 245 ~~~~~~~e~~~~~~~-~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~ 323 (666)
.......+.|+.... .+...-..+|+++|.+++|||||++.|++. ...+|+|..+...+. ++
T Consensus 111 ~~~gG~~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHg---------------eLDnGRG~ARqkLFR--HK 173 (641)
T KOG0463|consen 111 KQTGGGTEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHG---------------ELDNGRGAARQKLFR--HK 173 (641)
T ss_pred HhcCCCeeEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeec---------------ccccCccHHHHHHhh--hh
Confidence 334445566655433 344455689999999999999999999853 123455544444333 33
Q ss_pred cccccCeEEEEEE--EEE-----------------------ecCCeEEEEEeCCCccchHHHHHHhccc--CCEEEEEEe
Q 005973 324 EERERGITMTVAV--AYF-----------------------DSKNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVID 376 (666)
Q Consensus 324 ~e~~~GiTid~~~--~~~-----------------------~~~~~~i~liDTPGh~~f~~~~~~~~~~--aD~aIlVVD 376 (666)
.|.+.|.|..++. .-| +....-++|||.+||++|++.+..++.. .|+.+|+|-
T Consensus 174 HEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiG 253 (641)
T KOG0463|consen 174 HEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIG 253 (641)
T ss_pred hhcccCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEec
Confidence 3444444433211 111 1123568899999999999999998855 999999999
Q ss_pred CCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCC-------------
Q 005973 377 ASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD------------- 443 (666)
Q Consensus 377 a~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~------------- 443 (666)
|..| +.+.|+||+.++.++.+| ++||++|+|.+. .+.+++..+.+..+++.-|+..
T Consensus 254 aNaG--------IiGmTKEHLgLALaL~VP-VfvVVTKIDMCP--ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~ 322 (641)
T KOG0463|consen 254 ANAG--------IIGMTKEHLGLALALHVP-VFVVVTKIDMCP--ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVH 322 (641)
T ss_pred cccc--------ceeccHHhhhhhhhhcCc-EEEEEEeeccCc--HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEE
Confidence 9988 457999999999999999 999999999995 4566777777888887755432
Q ss_pred --------CCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCC--CCCCCceeeEEeEeecC-CCeEEE
Q 005973 444 --------ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPR--EFSKPLLMPICDVLKSQ-HGQVSA 512 (666)
Q Consensus 444 --------~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~--~~~~p~~~~I~~v~~~~-~G~v~v 512 (666)
.-.|+|.+|..+|+|+ .||..+.++.++.+ ..+.|..|.|+++|.++ +|+| +
T Consensus 323 ~A~NF~Ser~CPIFQvSNVtG~NL----------------~LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTv-v 385 (641)
T KOG0463|consen 323 AAVNFPSERVCPIFQVSNVTGTNL----------------PLLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTV-V 385 (641)
T ss_pred eeccCccccccceEEeccccCCCh----------------HHHHHHHhhcCcccccccCCCcceeecceEecCCcceE-e
Confidence 1237788888888887 37777766666544 34679999999999999 9999 9
Q ss_pred EEEEEeeeEeeCcEEEEcCCCc----eEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCCCcceeeEE
Q 005973 513 CGKLEAGALRSGLKVLVLPSGE----VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIATHL 588 (666)
Q Consensus 513 ~G~V~sG~Lk~Gd~v~v~P~~~----~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~~~~~F 588 (666)
.|++.+|+|+.+|.++++|... ...|+||++.+-++..+++||...++|+.|...++++|||+++|+..|..++.|
T Consensus 386 SGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweF 465 (641)
T KOG0463|consen 386 SGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEF 465 (641)
T ss_pred ecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEE
Confidence 9999999999999999999763 678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCc
Q 005973 589 ELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQ 656 (666)
Q Consensus 589 ~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~ 656 (666)
+|+|++|+|++.|.+.||..+|+|+.+|+|.|..+- ..+|+.|+.|.|+|++.+
T Consensus 466 EaEILVLHHPTTIsprYQAMvHcGSiRQTAtivsM~--------------kdcLRTGDka~V~FrFIk 519 (641)
T KOG0463|consen 466 EAEILVLHHPTTISPRYQAMVHCGSIRQTATIVSMG--------------KDCLRTGDKAKVQFRFIK 519 (641)
T ss_pred eeeEEEEecCCccCcchhheeeeccccceeeeeecC--------------hhhhhcCCcceEEEEEec
Confidence 999999999999999999999999999999998662 236888888888888864
No 29
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.9e-36 Score=344.92 Aligned_cols=279 Identities=26% Similarity=0.374 Sum_probs=230.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.||+|+||+|||||||+++|++..+.+.....- -.+++|...+|+++|+|+......+.+.++.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v---------------~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAV---------------AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccc---------------eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 589999999999999999999888877543210 02589999999999999999999999999999
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhh
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~ 426 (666)
+|||||||.+|...+.++++.+|++||||||..+ +..|+++++..+..+++| +|||+||||+.. .++.
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~---a~~~ 134 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPS---ARPD 134 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCC-EEEEEECCCCCC---cCHH
Confidence 9999999999999999999999999999999987 467999999999999999 899999999874 3455
Q ss_pred HHHHHHhhhhhhcCcCCC--CCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceeeEEeEe
Q 005973 427 SIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVL 503 (666)
Q Consensus 427 ~i~~el~~~l~~~~~~~~--~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~I~~v~ 503 (666)
.+..++..++..++.... .++++++||++|.+...... ....-..||++| ..+|+|..+.+.||+++|++++
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~-----~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD-----PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc-----cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 566777777765554332 46899999999987543211 000113578876 5667776777899999999999
Q ss_pred ecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeec----CcccceeccCCceeEEeeccCcCccccccEE
Q 005973 504 KSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 504 ~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
..+ .|++ +.|||.+|+|+.||.|++.|.+. ..+|++|+.+ +.+++.|.|||+|+|. |+ .++.+|++|
T Consensus 210 ~d~~~Grv-~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl 284 (594)
T TIGR01394 210 YDEYLGRI-AIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETI 284 (594)
T ss_pred eeCCCceE-EEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEE
Confidence 998 9999 89999999999999999999742 5789999864 6789999999999887 66 578899999
Q ss_pred ecCCCCc
Q 005973 576 CHPDFPV 582 (666)
Q Consensus 576 ~~~~~p~ 582 (666)
|+++.+.
T Consensus 285 ~~~~~~~ 291 (594)
T TIGR01394 285 ADPEVPE 291 (594)
T ss_pred eCCCccc
Confidence 9987543
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-36 Score=305.97 Aligned_cols=321 Identities=27% Similarity=0.390 Sum_probs=271.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
+..+||+++||+++|||||+.+|.+ ..++.+.+|-+||+|+..++......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG----------------------------vwT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG----------------------------VWTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc----------------------------eeeechhHHHhcCcEEEeccccCceEe
Confidence 4578999999999999999999983 34788899999999998877642110
Q ss_pred -------------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH
Q 005973 343 -------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (666)
Q Consensus 343 -------------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l 397 (666)
-+++.|+|+|||+-++.+|++++...|++||||+|+++. +++||+||+
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl 132 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHL 132 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHH
Confidence 156889999999999999999999999999999999875 689999999
Q ss_pred HHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccH
Q 005973 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 477 (666)
Q Consensus 398 ~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~L 477 (666)
..+.-+|++++|+|-||+|++. .++..+--+++.+|++..-. .+.|+||+||..+.||+ .|
T Consensus 133 ~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk~FvkGt~A--e~aPIIPiSA~~~~NID---------------al 193 (415)
T COG5257 133 MALEIIGIKNIIIVQNKIDLVS--RERALENYEQIKEFVKGTVA--ENAPIIPISAQHKANID---------------AL 193 (415)
T ss_pred HHHhhhccceEEEEecccceec--HHHHHHHHHHHHHHhccccc--CCCceeeehhhhccCHH---------------HH
Confidence 9999999999999999999994 56665666778888865443 46799999999999995 49
Q ss_pred HHHh-hhcCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc------------e
Q 005973 478 LDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------V 535 (666)
Q Consensus 478 L~~L-~~l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~------------~ 535 (666)
+++| ..++.|.++.++|.+|.|...|.++ .|.| +.|.+.+|.|++||+|.+.|.=+ .
T Consensus 194 ~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGV-iGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 194 IEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGV-IGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCce-ecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 9999 6689999999999999998888653 5778 89999999999999999999631 3
Q ss_pred EEEeeeeecCcccceeccCCceeEEeeccC----cCccccccEEecCCCCcceeeEEEEEEEEec---------CCCCcc
Q 005973 536 GTVHSIERDSQSCSVARAGDNIAVSLQGID----VSRVMSGGVLCHPDFPVAIATHLELKVLVLD---------FAPPIL 602 (666)
Q Consensus 536 ~~VksI~~~~~~v~~A~aGd~V~l~L~gid----~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~---------~~~pi~ 602 (666)
.+|.||+.....+++|++|-.|++.- .+| ..+-..|.|+..++..|++...|+.+..+|. ...||+
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT-~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik 351 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGT-KLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIK 351 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEec-ccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCccccccccccc
Confidence 57999999999999999999999963 333 3466789999999999999999999988887 246999
Q ss_pred CCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeee
Q 005973 603 IGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQY 662 (666)
Q Consensus 603 ~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~ 662 (666)
.|..+.|.+|+...-+.|+.... ..+++.|.+|+|.|.
T Consensus 352 ~~E~Lml~VGtatT~GvV~~~k~----------------------d~~ev~Lk~Pvcae~ 389 (415)
T COG5257 352 TNEVLMLNVGTATTVGVVTSAKK----------------------DEIEVKLKRPVCAEI 389 (415)
T ss_pred CCCeEEEEeecceeEEEEEEecC----------------------ceEEEEeccceecCC
Confidence 99999999999999998876521 346677777777764
No 31
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-37 Score=314.21 Aligned_cols=380 Identities=26% Similarity=0.335 Sum_probs=297.3
Q ss_pred Ccccccccccccccccccccccccccccccc------cCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 218 NLTSNMKNMSSTAKSGNSTNVSARKTNSHTQ------YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
+|.+||..|..|+...-.. +.+..+..... .-.|.+..+-.+.+..-.++|+++|..++|||||++.|+..
T Consensus 114 emnaSL~TL~~MA~~lGAs-~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQg-- 190 (591)
T KOG1143|consen 114 EMNASLRTLRTMAQALGAS-MVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQG-- 190 (591)
T ss_pred HHHHHHHHHHHHHHHhCCc-eEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecc--
Confidence 3888899999888763322 12222221111 11121222222334455689999999999999999999842
Q ss_pred ccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---------------------CCeEEEEEe
Q 005973 292 RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---------------------KNYHVVVLD 350 (666)
Q Consensus 292 ~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~---------------------~~~~i~liD 350 (666)
...+|+|..++ .+..+..|.+.|.|..+....+.. ....++|+|
T Consensus 191 -------------eLDnG~GrARl--n~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiD 255 (591)
T KOG1143|consen 191 -------------ELDNGNGRARL--NIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFID 255 (591)
T ss_pred -------------cccCCCCeeee--ehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEee
Confidence 12345554443 455566666667665543332211 235689999
Q ss_pred CCCccchHHHHHHhccc--CCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHH
Q 005973 351 SPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSI 428 (666)
Q Consensus 351 TPGh~~f~~~~~~~~~~--aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i 428 (666)
.+||.+|.+.++.++.. +++++|||.|..|. ...|+||+.++.++++| ++|+++|||+++ ...++.+
T Consensus 256 LAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi--------~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~--~~~~~~t 324 (591)
T KOG1143|consen 256 LAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI--------TWTTREHLGLIAALNIP-FFVLVTKMDLVD--RQGLKKT 324 (591)
T ss_pred cccchhhheeeeeecccCCCceEEEEEEcCCCC--------ccccHHHHHHHHHhCCC-eEEEEEeecccc--chhHHHH
Confidence 99999999999999866 89999999999983 56899999999999999 999999999994 5566778
Q ss_pred HHHHhhhhhhcCcCC---------------------CCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCC
Q 005973 429 KVQLGTFLRSCGFKD---------------------ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (666)
Q Consensus 429 ~~el~~~l~~~~~~~---------------------~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~ 487 (666)
.+++..++.+.|+.. .-+|++.+|..+|+|+. ||..+.++.+|
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~----------------ll~~fLn~Lsp 388 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR----------------LLRTFLNCLSP 388 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh----------------HHHHHHhhcCC
Confidence 888888887766542 23588899999999983 66666555555
Q ss_pred CCC-------CCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC----ceEEEeeeeecCcccceeccCC
Q 005973 488 PRE-------FSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGD 555 (666)
Q Consensus 488 ~~~-------~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~----~~~~VksI~~~~~~v~~A~aGd 555 (666)
... ...|..|.|+++|+++ +|+| +.|.+.+|.+..|+.++++|.. .+.+|-+|+++++++..++|||
T Consensus 389 ~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~V-VGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGq 467 (591)
T KOG1143|consen 389 AGTAEERIQLVQLPAEFQVDEIYNVPHVGQV-VGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQ 467 (591)
T ss_pred cCChHHHHHHhcCcceeeHhHeecCCccccc-ccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCcc
Confidence 332 2457889999999999 9999 9999999999999999999976 3789999999999999999999
Q ss_pred ceeEEeeccCcCccccccEEecCCCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCccc
Q 005973 556 NIAVSLQGIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVT 635 (666)
Q Consensus 556 ~V~l~L~gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~ 635 (666)
...|.|...|.-.+++||||..++..|+.+..|+|++++|-|.+.|..|+|.++|+|+.+++|.|.+|...
T Consensus 468 aAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~~--------- 538 (591)
T KOG1143|consen 468 AASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHATYICEGFQATVHIGSVRQTAVITHIDDA--------- 538 (591)
T ss_pred ceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhhHhheecceEEEEEcceeeeeeeeeeccc---------
Confidence 99999998888889999999999999999999999999999999999999999999999999999887432
Q ss_pred ccCCcccCCCCeEEEEEEeCc
Q 005973 636 KKSPRCLTAKQSAIVEVNQSQ 656 (666)
Q Consensus 636 k~~p~~L~~g~~a~v~l~l~~ 656 (666)
.+|..|+.|.|.|.+..
T Consensus 539 ----d~lrtg~~AvV~f~F~~ 555 (591)
T KOG1143|consen 539 ----DCLRTGKWAVVKFCFAY 555 (591)
T ss_pred ----ccccCCceEEEEEEecC
Confidence 25888999999998853
No 32
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-35 Score=307.83 Aligned_cols=284 Identities=25% Similarity=0.391 Sum_probs=234.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+...|||||.|++||||||+..|+.+.|....+.-- -..+||....|+++|||+-..-..+.+++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v---------------~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV---------------AERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch---------------hhhhcCccchhhhcCcEEEeccceeecCC
Confidence 456899999999999999999999998887654311 12579999999999999998888899999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
.+++|+|||||.+|.....+.+...|.+||+|||.+| +++||+..+.-+.++|++ .|||+||+|+.+...
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~Arp- 137 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALALGLK-PIVVINKIDRPDARP- 137 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHHcCCC-cEEEEeCCCCCCCCH-
Confidence 9999999999999999999999999999999999998 689999999999999999 589999999986443
Q ss_pred hhhHHHHHHhhhhhhcCcCCC--CCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceeeEE
Q 005973 424 RFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~--~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~I~ 500 (666)
+++..+...++-.++..+. .+|++..||+.|.--.++...... -..|+++| +++|.|..+.+.||+|.|.
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~-----m~pLfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADD-----MAPLFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccc-----hhHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 4455666666655554433 468999999999865443221111 13589987 8899999899999999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC---ceEEEeeeeec----CcccceeccCCceeEEeeccCcCccccc
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~---~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
..-... .|.+ ..|||++|++++||.|.+...+ ...+|..+..+ +.++++|.|||+|+|+ |+ .++..|
T Consensus 211 ~Ldyn~y~GrI-gigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G~--~~~~ig 285 (603)
T COG1217 211 QLDYNSYVGRI-GIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--GL--EDINIG 285 (603)
T ss_pred eecccccccee-EEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc--Cc--cccccc
Confidence 988888 9999 8999999999999999987644 35677777654 6789999999999998 87 567889
Q ss_pred cEEecCCCCcce
Q 005973 573 GVLCHPDFPVAI 584 (666)
Q Consensus 573 ~VL~~~~~p~~~ 584 (666)
++||+++.+.+.
T Consensus 286 dTi~d~~~~~aL 297 (603)
T COG1217 286 DTICDPDNPEAL 297 (603)
T ss_pred ccccCCCCccCC
Confidence 999999876543
No 33
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=326.66 Aligned_cols=279 Identities=25% Similarity=0.375 Sum_probs=228.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
...||+|+||+|+|||||+++|++..+.+...... -.+.+|....|+++|+|+......+.+.+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 46899999999999999999999877766543210 026899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.++|||||||.+|...+..+++.+|++|||||+..+ +..|++.++..+..+++| +|||+||||+.. .+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip-~IVviNKiD~~~---a~ 136 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLK-PIVVINKVDRPG---AR 136 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCC-EEEEEECcCCCC---Cc
Confidence 999999999999999999999999999999999987 467999999999999999 789999999874 34
Q ss_pred hhHHHHHHhhhhhhcCcCC--CCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHh-hhcCCCCCCCCCCceeeEE
Q 005973 425 FDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAI-DSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~--~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L-~~l~~~~~~~~~p~~~~I~ 500 (666)
++.+.+++..++..++... ..+|++++||++|.|..+.... ..+ ..||++| +.+|+|.++.++||+++|+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~------~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~ 210 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDM------AEDMTPLYQAIVDHVPAPDVDLDGPFQMQIS 210 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcccc------ccchHHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 4556666666665544332 2478999999999975442110 011 3477776 5678777778899999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC-Cc--eEEEeeeeec----CcccceeccCCceeEEeeccCcCccccc
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS-GE--VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~-~~--~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
+++..+ .|++ ++|||++|+|+.||.|++.+. +. ..+|.+|... +.++++|.|||+|++. |+ .++..|
T Consensus 211 k~~~d~~~G~i-~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~G 285 (607)
T PRK10218 211 QLDYNSYVGVI-GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--GL--GELNIS 285 (607)
T ss_pred eeEecCCCcEE-EEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--Cc--cccccC
Confidence 999888 9998 899999999999999999876 43 5678888643 6789999999999987 65 568899
Q ss_pred cEEecCCCC
Q 005973 573 GVLCHPDFP 581 (666)
Q Consensus 573 ~VL~~~~~p 581 (666)
++||+++.+
T Consensus 286 dTl~~~~~~ 294 (607)
T PRK10218 286 DTVCDTQNV 294 (607)
T ss_pred cEEecCCCc
Confidence 999987654
No 34
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-35 Score=297.06 Aligned_cols=347 Identities=24% Similarity=0.333 Sum_probs=276.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--- 341 (666)
..+||+|+||+++|||||.++|..... ....|.++..++||+|.|.++-.+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S------------------------TaAFDk~pqS~eRgiTLDLGFS~~~v~~p 61 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS------------------------TAAFDKHPQSTERGITLDLGFSTMTVLSP 61 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc------------------------chhhccCCcccccceeEeecceeeecccc
Confidence 358999999999999999999973211 23457788888999999998876642
Q ss_pred ------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 ------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ------~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
+..+++|+|+|||...++..+.++...|++|||||+..| .+.|+.|++.+...+-.+ .|||+||+
T Consensus 62 arLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG--------~QtQtAEcLiig~~~c~k-lvvvinki 132 (522)
T KOG0461|consen 62 ARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG--------KQTQTAECLIIGELLCKK-LVVVINKI 132 (522)
T ss_pred cccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc--------cccccchhhhhhhhhccc-eEEEEecc
Confidence 345679999999999999999999999999999999988 467999999877766555 89999999
Q ss_pred ccccccc--hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccC----CCcccCCCCccccccCCcccHHHHh-hhcCCCC
Q 005973 416 DAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN----QNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPP 488 (666)
Q Consensus 416 Dlv~~~~--e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG----~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~ 488 (666)
|.....+ ..++.....+.+-|+..+|. .+.|++++||+.| ++|. .|.++| ..+-.|.
T Consensus 133 d~lpE~qr~ski~k~~kk~~KtLe~t~f~-g~~PI~~vsa~~G~~~~~~i~---------------eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 133 DVLPENQRASKIEKSAKKVRKTLESTGFD-GNSPIVEVSAADGYFKEEMIQ---------------ELKEALESRIFEPK 196 (522)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhcCcC-CCCceeEEecCCCccchhHHH---------------HHHHHHHHhhcCCC
Confidence 9875432 33566777888888888986 4689999999999 4553 377777 4567888
Q ss_pred CCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcC
Q 005973 489 REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVS 567 (666)
Q Consensus 489 ~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~ 567 (666)
|+.+.||.|.|+++|.++ .|+| ++|+|.+|.|+.|+.|.+-..+..-+||+||++++++..|.+||++++++...|..
T Consensus 197 Rd~~gpflm~vDHCF~IKGQGTV-~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~k 275 (522)
T KOG0461|consen 197 RDEEGPFLMAVDHCFAIKGQGTV-LTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEK 275 (522)
T ss_pred cCCCCCeEEEeeeeEEeccCceE-EeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHH
Confidence 999999999999999999 9999 99999999999999999988888889999999999999999999999999999988
Q ss_pred ccccccEEecCCCCccee-eEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEE--------eeccC--cCcccc
Q 005973 568 RVMSGGVLCHPDFPVAIA-THLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITS--------LLDTK--TGKVTK 636 (666)
Q Consensus 568 ~i~~G~VL~~~~~p~~~~-~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~--------~lD~~--tg~~~k 636 (666)
.+.|| ++|.|+..-+.. --.+.+..- .+..+|..-..+++-+|+.++.|++.-+.. .+|.+ -+| ..
T Consensus 276 lleRg-i~~~pg~Lk~~~avl~~vepI~-yfr~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E-~d 352 (522)
T KOG0461|consen 276 LLERG-ICGPPGTLKSTKAVLATVEPIQ-YFRKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGE-FD 352 (522)
T ss_pred HHhcc-ccCCCcccceeeeeeEeecchH-HHhhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccc-cc
Confidence 88887 566666532211 111111111 145788877888888999999999987651 12211 112 12
Q ss_pred cCCcccCCCCeEEEEEEeCceEEeeecc
Q 005973 637 KSPRCLTAKQSAIVEVNQSQNTSFQYYF 664 (666)
Q Consensus 637 ~~p~~L~~g~~a~v~l~l~~pI~ve~~~ 664 (666)
--|..+.+.+.-.+.+.+++||..-+|+
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred cChhhcCCchheeeeeeecccccCcccc
Confidence 3477788888889999999999888876
No 35
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=3e-34 Score=327.74 Aligned_cols=267 Identities=28% Similarity=0.438 Sum_probs=220.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--- 341 (666)
...||+|+||+|||||||+++|++..+.++.+.+. .+.+|...+|+++|+|+......+.+
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~----------------~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR----------------EQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc----------------ccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 36799999999999999999999988877654321 36788899999999999987776654
Q ss_pred --CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 --~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
..+.++|||||||.+|...+..++..+|++|||||++++ ...|+.+++..+...++| +|+|+||+|+..
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~ 136 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPS 136 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCc
Confidence 237899999999999999999999999999999999987 356888888877778998 999999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceee
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~ 498 (666)
.+. +.+.+++...+ ++. ...++++||++|.|+.+ |+++| ..+++|..+.+.||++.
T Consensus 137 ~~~---~~~~~el~~~l---g~~--~~~vi~vSAktG~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 137 ADP---ERVKKEIEEVI---GLD--ASEAILASAKTGIGIEE---------------ILEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred cCH---HHHHHHHHHHh---CCC--cceEEEeeccCCCCHHH---------------HHHHHHHhCCCCCCCCCCCeEEE
Confidence 322 22334444433 332 12479999999999965 88888 55777777788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecC---cccceeccCCceeEEeecc-CcCcccccc
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS---QSCSVARAGDNIAVSLQGI-DVSRVMSGG 573 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~---~~v~~A~aGd~V~l~L~gi-d~~~i~~G~ 573 (666)
|++++.++ .|.+ ++|||.+|+|+.||+|+++|++...+|++|..++ .+++.|.||| |++.+.|+ +..+++.|+
T Consensus 194 V~~~~~d~~~G~v-~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gd 271 (595)
T TIGR01393 194 IFDSHYDNYRGVV-ALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGD 271 (595)
T ss_pred EEEEEEeCCCcEE-EEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCC
Confidence 99999998 9988 8999999999999999999999989999998764 6789999999 66666677 457899999
Q ss_pred EEecCCCC
Q 005973 574 VLCHPDFP 581 (666)
Q Consensus 574 VL~~~~~p 581 (666)
+|++.+.+
T Consensus 272 tl~~~~~~ 279 (595)
T TIGR01393 272 TITHVKNP 279 (595)
T ss_pred EEECCCCc
Confidence 99987654
No 36
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.5e-34 Score=327.41 Aligned_cols=267 Identities=27% Similarity=0.427 Sum_probs=220.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--- 341 (666)
..+||+|+||++||||||+++|++..+.+..+.+. .+++|..++|+++|+|+......+.+
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~----------------~~~lD~~~~ErerGiTi~~~~v~~~~~~~ 69 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK----------------AQVLDSMDLERERGITIKAQAVRLNYKAK 69 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc----------------cccccCchHHhhcCCcccccEEEEEEEcc
Confidence 46799999999999999999999988887654321 36789999999999999877666644
Q ss_pred --CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 --~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.++.++|||||||.+|...+.+++..+|++|||||++.+ ++.|+.+++.++...++| +|+|+||+|+..
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 368899999999999999999999999999999999987 356888888888888998 999999999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceee
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~ 498 (666)
.. ++.+.+++... +++. ...++++||++|.|+.+ |+++| ..+++|..+.++||++.
T Consensus 141 a~---~~~v~~ei~~~---lg~~--~~~vi~iSAktG~GI~~---------------Ll~~I~~~lp~P~~~~~~pl~~~ 197 (600)
T PRK05433 141 AD---PERVKQEIEDV---IGID--ASDAVLVSAKTGIGIEE---------------VLEAIVERIPPPKGDPDAPLKAL 197 (600)
T ss_pred cc---HHHHHHHHHHH---hCCC--cceEEEEecCCCCCHHH---------------HHHHHHHhCccccCCCCCCceEE
Confidence 32 23333444443 2332 12479999999999965 89998 55677777788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec---CcccceeccCCceeEEeecc-CcCcccccc
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 573 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~~G~ 573 (666)
|++++..+ .|.+ ++|||.+|+|+.||+|+++|.+...+|.+|... ..+++.|.||| |++.+.|+ +..+++.|+
T Consensus 198 Vfd~~~d~~~G~v-~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gd 275 (600)
T PRK05433 198 IFDSWYDNYRGVV-VLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEecCCCceE-EEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCC
Confidence 99999988 9988 899999999999999999999999999999864 57899999999 55555666 456799999
Q ss_pred EEecCCCC
Q 005973 574 VLCHPDFP 581 (666)
Q Consensus 574 VL~~~~~p 581 (666)
+|++...+
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99987654
No 37
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=3.9e-34 Score=289.47 Aligned_cols=216 Identities=55% Similarity=0.992 Sum_probs=192.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
||+|+||+++|||||+++|++..+.+....++++++.+...|+.+++|+|.+|....|+++|+|++.....|.+.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999999999999988888888888888999999999999999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc--cccchhh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYSKDRF 425 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv--~~~~e~~ 425 (666)
|||||||.+|...++.++..+|++|+|||+..+.++..|. ...++.+++.++..++++++|||+||||+. .+++..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFE-KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccc-cccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 9999999999999999999999999999999875544333 246888898888888877799999999998 3456678
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCC
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~ 487 (666)
+.+.+++..+++.+++....++++++||++|.|+.+... .++||+|++|+++|+.+.++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~---~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSE---NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCC---CCCCccCCcHHHHHhCCCCC
Confidence 888889988888888866678999999999999987553 58999999999999987654
No 38
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-34 Score=308.32 Aligned_cols=265 Identities=31% Similarity=0.404 Sum_probs=223.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
+..|++||.|++||||||..+|+..+|.+....+++ .++|....||+||||+......+-+.+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~----------------q~LDkl~vERERGITIkaQtasify~~~ 122 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE----------------QVLDKLQVERERGITIKAQTASIFYKDG 122 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh----------------hhhhhhhhhhhcCcEEEeeeeEEEEEcC
Confidence 568899999999999999999999999887765543 579999999999999987666665555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
+.++|||||||.+|.....+.+..+|++||||||.+| +++||...+.++.+.|+. +|.|+||+|+...+
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG--------vqAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG--------VQAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC--------chHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 8999999999999999999999999999999999999 589999999999999998 99999999999766
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceeeEE
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~I~ 500 (666)
.++ +..++..++ ++. .-+++.+||++|.|+.+ ||++| +.+|+|....++|||+.++
T Consensus 194 pe~---V~~q~~~lF---~~~--~~~~i~vSAK~G~~v~~---------------lL~AII~rVPpP~~~~d~plr~Lif 250 (650)
T KOG0462|consen 194 PER---VENQLFELF---DIP--PAEVIYVSAKTGLNVEE---------------LLEAIIRRVPPPKGIRDAPLRMLIF 250 (650)
T ss_pred HHH---HHHHHHHHh---cCC--ccceEEEEeccCccHHH---------------HHHHHHhhCCCCCCCCCcchHHHhh
Confidence 655 555555554 332 23679999999999955 89986 8899999999999999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec---CcccceeccCCceeEEeecc-CcCccccccEE
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGGVL 575 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~~G~VL 575 (666)
+.+... .|.+ +.++|..|.+++||+|....+++.-.|+.+... ..++....||| |+..+.++ +..+...|++|
T Consensus 251 ds~yD~y~G~I-~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 251 DSEYDEYRGVI-ALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhhhcceE-EEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccc-cceeEeccccccccccccee
Confidence 999999 9998 899999999999999999999887666666543 35666777777 44444454 36778899999
Q ss_pred ecCC
Q 005973 576 CHPD 579 (666)
Q Consensus 576 ~~~~ 579 (666)
++..
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 9876
No 39
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-33 Score=299.98 Aligned_cols=268 Identities=28% Similarity=0.438 Sum_probs=232.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
.+..|..||.|.+||||||..||+..++.++.+.|.. .++|.+..||+||||+......+.+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~----------------Q~LDsMdiERERGITIKaq~v~l~Yk~ 70 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRA----------------QVLDSMDIERERGITIKAQAVRLNYKA 70 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHH----------------HhhhhhhhHhhcCceEEeeEEEEEEEe
Confidence 4578899999999999999999999999999998763 6799999999999999866665543
Q ss_pred ---CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 342 ---~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
..+.++|||||||.+|.-...+.+..|.++||||||++| ++.||.....++...++. +|-|+||+|++
T Consensus 71 ~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG--------veAQTlAN~YlAle~~Le-IiPViNKIDLP 141 (603)
T COG0481 71 KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENNLE-IIPVLNKIDLP 141 (603)
T ss_pred CCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc--------hHHHHHHHHHHHHHcCcE-EEEeeecccCC
Confidence 458899999999999999999999999999999999999 578999999999999998 99999999999
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCcee
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLM 497 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~ 497 (666)
..+.++ +++++...+ |+... ..+.+||++|.||.+ +|++| ..+|+|..+.++|++.
T Consensus 142 ~Adper---vk~eIe~~i---Gid~~--dav~~SAKtG~gI~~---------------iLe~Iv~~iP~P~g~~~~pLkA 198 (603)
T COG0481 142 AADPER---VKQEIEDII---GIDAS--DAVLVSAKTGIGIED---------------VLEAIVEKIPPPKGDPDAPLKA 198 (603)
T ss_pred CCCHHH---HHHHHHHHh---CCCcc--hheeEecccCCCHHH---------------HHHHHHhhCCCCCCCCCCcceE
Confidence 776665 566666665 65433 458999999999965 89887 7889999999999999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec---CcccceeccCCceeEEeecc-CcCccccc
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSG 572 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~~G 572 (666)
.|+|.+... .|.| +..||..|+|++||+|.++.++....|..+..+ ....+...||+ |+....|+ +..+.+.|
T Consensus 199 LifDS~yD~Y~GVv-~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VG 276 (603)
T COG0481 199 LIFDSWYDNYLGVV-VLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVG 276 (603)
T ss_pred EEEeccccccceEE-EEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCccc
Confidence 999999999 9988 899999999999999999999999999888875 46788899999 55555555 56788999
Q ss_pred cEEecCCCC
Q 005973 573 GVLCHPDFP 581 (666)
Q Consensus 573 ~VL~~~~~p 581 (666)
|++.+...|
T Consensus 277 DTiT~~~~p 285 (603)
T COG0481 277 DTITLASNP 285 (603)
T ss_pred ceEeccCCC
Confidence 999965543
No 40
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-35 Score=307.37 Aligned_cols=342 Identities=35% Similarity=0.629 Sum_probs=298.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
...+++|+++||+++||||+.. +.++.++.+.++++++++...++|+|.|+|.+|.+..|+++|++++.....+...
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 3467999999999999999998 7789999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc--c
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--Y 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~--~ 420 (666)
.+.++++|.|||.+|.++|+.+..+||+++++|.+..|.||+++.. .+|+++|+.+...+|+.++|+.+||||... +
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagisk-ngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccc-cchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 9999999999999999999999999999999999988999999886 589999999999999999999999999764 4
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
+..++.++.+.....++..++ +.. .. ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~----------------n~~---------------~~---------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGY----------------NPA---------------AV---------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeecccc----------------CCh---------------hh---------------------hc
Confidence 455554443333332222221 110 01 22
Q ss_pred eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCC-
Q 005973 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD- 579 (666)
Q Consensus 501 ~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~- 579 (666)
+++... . .| +..|.++.++.+...|.....++++.++++..-..+.+|++|++..+++...++.+|.++.+..
T Consensus 188 ~~~~~~--g---~~-~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIG--G---IG-VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeec--c---ee-eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 444433 1 12 8889999999999999888889999999988777999999999999999999999999998864
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEE
Q 005973 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTS 659 (666)
Q Consensus 580 ~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ 659 (666)
.|+.....|.+++.++.|+..|..||-+.|-+|+.+++|++.+|..++|..+|+.+...|+++++++.|.+++.+.+|+|
T Consensus 262 ~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ 341 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLC 341 (391)
T ss_pred CCccccccceeeEEEecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccc
Confidence 45556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCC
Q 005973 660 FQYYFVC 666 (666)
Q Consensus 660 ve~~~~~ 666 (666)
+|.|+++
T Consensus 342 ve~~~~~ 348 (391)
T KOG0052|consen 342 VESFSDY 348 (391)
T ss_pred ccccccc
Confidence 9999864
No 41
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=2.1e-33 Score=281.88 Aligned_cols=207 Identities=36% Similarity=0.646 Sum_probs=185.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+||+|||||||+++|++..+.+..+.+.++++.+...+++.+.+.+.+|....|+++|+|++.....+.+.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999999988888888888888888899999999999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhH
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
|||||||.+|...+..++..+|++|+|||+..+ +..++.+++.++...+++++|+|+||+|+..+..+.+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHH
Confidence 999999999999999999999999999999987 346777888888888887788899999998766666777
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCC
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~ 487 (666)
+..++..+++.+++. .++++++||++|.|+.+... .++||+|++||++|+.++++
T Consensus 153 i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~---~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 153 IVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSE---NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCC---CCCCCCCCcHHHHHhcCCCC
Confidence 888888888888763 35789999999999988653 58999999999999999876
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=5.6e-31 Score=261.62 Aligned_cols=192 Identities=35% Similarity=0.546 Sum_probs=164.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
+++|+++||+|+|||||+++|++... ..|+..+.-.+.+|...+|+++|+|++.....++.++.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~ 66 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRH 66 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCeE
Confidence 57999999999999999999996421 122222111256899999999999999999999999999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
++|+|||||.+|...+..++..+|++|+|||+..+ +..|+++++.++..+++|++|+|+||||++. .++.+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELL 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHH
Confidence 99999999999999999999999999999999987 4679999999999999987889999999974 34556
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCC-cccHHHHhhhcCCC
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK-GPCLLDAIDSLRPP 487 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~-g~~LL~~L~~l~~~ 487 (666)
+.+.+++..+++.++++...++++|+||++|.|+.+ .++||+ +++|+++|+++.++
T Consensus 138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~------~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD------PNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC------CCcchhcHhHHHHHHHhCCCC
Confidence 778889999999999987789999999999999854 379997 79999999876543
No 43
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.97 E-value=1.4e-31 Score=313.84 Aligned_cols=349 Identities=23% Similarity=0.254 Sum_probs=241.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
.+.+||+|+||+|+|||||+++|++..+.+.... .| .++.+|...+|++||+|++.....+.+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 82 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMVHEY 82 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEEEEe
Confidence 4578999999999999999999999888876531 11 146799999999999999887665544
Q ss_pred --CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 --~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.++.++|+|||||.+|...+..+++.+|++|+|||+..| +..|++.++.++...++| +|+++||||+..
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g--------~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~ 153 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG--------VMPQTETVLRQALRERVK-PVLFINKVDRLI 153 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC--------CCccHHHHHHHHHHcCCC-eEEEEECchhhc
Confidence 578899999999999999999999999999999999987 457999999998888998 799999999863
Q ss_pred cc--------chhhhHHHHHHhhhhhhcC---------cCCCCCcEEEeecccCCCcccCC------------------C
Q 005973 420 YS--------KDRFDSIKVQLGTFLRSCG---------FKDASLTWIPLSALENQNLVTAP------------------D 464 (666)
Q Consensus 420 ~~--------~e~~~~i~~el~~~l~~~~---------~~~~~i~iIpvSA~tG~nI~e~~------------------~ 464 (666)
.+ ..++..+.+++..++..+. +.+..-.+++.||+.++++.... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 233 (731)
T PRK07560 154 KELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGK 233 (731)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCC
Confidence 21 2334444455554444321 22222346778999888774100 0
Q ss_pred CccccccCCc-ccHHHHhhh-cCCCCC-------------------------CCCCCceeeEEeEeecC-CCeEEEEEEE
Q 005973 465 DGRLLSWYKG-PCLLDAIDS-LRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKL 516 (666)
Q Consensus 465 ~~~~~~Wy~g-~~LL~~L~~-l~~~~~-------------------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V 516 (666)
...+..|+-- ..||++|.. +|.|.. +.+.||.+.|++++..+ .|.+ ++|||
T Consensus 234 ~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v-a~~RV 312 (731)
T PRK07560 234 QKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV-ATGRV 312 (731)
T ss_pred HHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE-EEEEE
Confidence 0000111100 257888744 555531 22458999999999888 8988 89999
Q ss_pred EeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCcCccccccEEecCCCCcceee-EEEEE
Q 005973 517 EAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIAT-HLELK 591 (666)
Q Consensus 517 ~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~~~~-~F~a~ 591 (666)
.+|+|++||.|++.+.+...+|..|... ..+++.|.|||+|+|. |+ .++..|++|+.+...++... .+...
T Consensus 313 ~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--gl--~~~~~GdtL~~~~~~~~~~~~~~~p~ 388 (731)
T PRK07560 313 FSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVT--GL--KDARAGETVVSVEDMTPFESLKHISE 388 (731)
T ss_pred EEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEE--cc--cccccCCEEeCCCccccccccccCCC
Confidence 9999999999999998888889888754 5789999999999986 65 45678999998653322111 11111
Q ss_pred EEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcc
Q 005973 592 VLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRC 641 (666)
Q Consensus 592 i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~ 641 (666)
+++.-...|...+....|.-+..+..-....+....|..||+.+......
T Consensus 389 Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GE 438 (731)
T PRK07560 389 PVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGE 438 (731)
T ss_pred CeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCH
Confidence 11111122333333333333333444444555556666777766555543
No 44
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=3.3e-30 Score=299.50 Aligned_cols=248 Identities=25% Similarity=0.347 Sum_probs=199.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
..++++|+|+||+|||||||+++|.... + .....+|+|++.....+.+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v-----------------------------~~~e~~GIT~~iga~~v~~~ 335 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN--V-----------------------------AAGEAGGITQHIGAYQVETN 335 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC--c-----------------------------cccccCceeeeccEEEEEEC
Confidence 5678999999999999999999997321 1 11123689999988889888
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
++.++|||||||.+|..++.+++..+|++|||||+.++ .++|+.+++.++...++| +|||+||||+..++.
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~ 406 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGANP 406 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccCH
Confidence 89999999999999999999999999999999999987 468999999999999999 999999999976543
Q ss_pred hhhhHHHHHHhh---hhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh---cCCCCCCCCCCce
Q 005973 423 DRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLL 496 (666)
Q Consensus 423 e~~~~i~~el~~---~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~---l~~~~~~~~~p~~ 496 (666)
++ +..++.. +...++ ..++++++||++|+|+.+ |++.|.. +.....+.+.|++
T Consensus 407 e~---V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~e---------------Lle~I~~~~e~~~l~~~~~~~~~ 465 (787)
T PRK05306 407 DR---VKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDE---------------LLEAILLQAEVLELKANPDRPAR 465 (787)
T ss_pred HH---HHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchH---------------HHHhhhhhhhhhhcccCCCCCcE
Confidence 33 3333322 122222 247899999999999976 5555422 1223344578899
Q ss_pred eeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee-cCcccceeccCCceeEEeeccCcCcc-cccc
Q 005973 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRV-MSGG 573 (666)
Q Consensus 497 ~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gid~~~i-~~G~ 573 (666)
..|.+++..+ .|.+ ++|+|.+|+|+.||.|+++| ...+|++|+. ++..+..|.||+.|.|. |++ .+ ..|+
T Consensus 466 g~V~es~~dkg~G~v-~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~Gd 538 (787)
T PRK05306 466 GTVIEAKLDKGRGPV-ATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAGD 538 (787)
T ss_pred EEEEEEEEcCCCeEE-EEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCCC
Confidence 9999999888 9998 89999999999999999985 5789999997 47799999999999887 653 34 6899
Q ss_pred EEecC
Q 005973 574 VLCHP 578 (666)
Q Consensus 574 VL~~~ 578 (666)
+|+..
T Consensus 539 ~l~~~ 543 (787)
T PRK05306 539 EFVVV 543 (787)
T ss_pred EEEEc
Confidence 99854
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=5.9e-30 Score=291.19 Aligned_cols=246 Identities=26% Similarity=0.351 Sum_probs=194.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+||+|||||||+++|.+... .....+|+|++.....+.+.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-------------------------------~~~e~~GIT~~ig~~~v~~~~ 133 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV-------------------------------AQGEAGGITQHIGAYHVENED 133 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc-------------------------------ccccCCceeecceEEEEEECC
Confidence 4678999999999999999999984211 111236889998888887755
Q ss_pred e-EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 344 Y-HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 ~-~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
. .++|||||||++|...+.+++..+|++|||||+.++ .++|+.+++.+++..++| +|+|+||+|+.+.+.
T Consensus 134 ~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~ 204 (587)
T TIGR00487 134 GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEANP 204 (587)
T ss_pred CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCCH
Confidence 4 899999999999999999999999999999999987 467999999999999999 999999999975333
Q ss_pred hhhhHHHHHHhh---hhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh---cCCCCCCCCCCce
Q 005973 423 DRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLL 496 (666)
Q Consensus 423 e~~~~i~~el~~---~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~---l~~~~~~~~~p~~ 496 (666)
++ +.+++.. ....++ ..++++++||++|+|+.+ |++.|.. +.....+.+.|++
T Consensus 205 e~---v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~e---------------Ll~~I~~~~~~~~l~~~~~~~~~ 263 (587)
T TIGR00487 205 DR---VKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDE---------------LLDMILLQSEVEELKANPNGQAS 263 (587)
T ss_pred HH---HHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHH---------------HHHhhhhhhhhccccCCCCCCce
Confidence 22 3333222 111111 235799999999999976 5665522 2223344568999
Q ss_pred eeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee-cCcccceeccCCceeEEeeccCcCcc-cccc
Q 005973 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRV-MSGG 573 (666)
Q Consensus 497 ~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gid~~~i-~~G~ 573 (666)
++|.+++..+ .|.+ ++|+|.+|+|++||.|.++|. ..+|++|+. ++..++.|.||+.|.+. |++ .+ ..|+
T Consensus 264 ~~V~ev~~~~g~G~v-~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~aGd 336 (587)
T TIGR00487 264 GVVIEAQLDKGRGPV-ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAAGD 336 (587)
T ss_pred eEEEEEEEeCCCcEE-EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCCCC
Confidence 9999999988 8998 899999999999999999985 578999998 57889999999999886 664 23 6799
Q ss_pred EEec
Q 005973 574 VLCH 577 (666)
Q Consensus 574 VL~~ 577 (666)
.++-
T Consensus 337 ~~~~ 340 (587)
T TIGR00487 337 EFIV 340 (587)
T ss_pred EEEE
Confidence 8874
No 46
>PRK00007 elongation factor G; Reviewed
Probab=99.97 E-value=8.6e-31 Score=305.60 Aligned_cols=267 Identities=27% Similarity=0.351 Sum_probs=207.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.+||+|+||+|+|||||+++|++..+.+..-. . .. ...+.+|....|+++|+|++.....+.+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g--~-------v~----~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~ 75 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIG--E-------VH----DGAATMDWMEQEQERGITITSAATTCFWKDH 75 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccc--c-------cc----CCcccCCCCHHHHhCCCCEeccEEEEEECCe
Confidence 578999999999999999999998877663210 0 00 1146899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
+++|+|||||.+|...+.+++..+|++||||||..| +..|+++++.++..+++| +|+++||||+...+
T Consensus 76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~--- 143 (693)
T PRK00007 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD--- 143 (693)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 999999999999999999999999999999999988 468999999999999999 78999999998533
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeec---------------------------------------------------
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSA--------------------------------------------------- 453 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA--------------------------------------------------- 453 (666)
+..+.+++...+.... ....+|+||
T Consensus 144 ~~~~~~~i~~~l~~~~----~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v 219 (693)
T PRK00007 144 FYRVVEQIKDRLGANP----VPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAA 219 (693)
T ss_pred HHHHHHHHHHHhCCCe----eeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHH
Confidence 2233333333322110 112344444
Q ss_pred -------------------------------------------ccCCCcccCCCCccccccCCcccHHHHhh-hcCCCCC
Q 005973 454 -------------------------------------------LENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR 489 (666)
Q Consensus 454 -------------------------------------------~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~-~l~~~~~ 489 (666)
+++.|+ ..||++|. .+|.|..
T Consensus 220 ~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv---------------~~LLd~I~~~lPsP~~ 284 (693)
T PRK00007 220 AEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGV---------------QPLLDAVVDYLPSPLD 284 (693)
T ss_pred HccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCH---------------HHHHHHHHHHCCChhh
Confidence 444443 34899884 4554421
Q ss_pred --------------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----
Q 005973 490 --------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---- 544 (666)
Q Consensus 490 --------------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---- 544 (666)
+.+.||.+.|+++...+ .|.+ +++||++|+|+.||+|+..-.++..+|..|...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i-a~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~ 363 (693)
T PRK00007 285 VPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKL-TFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANK 363 (693)
T ss_pred cccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCC
Confidence 23568999999999888 8988 899999999999999987655666778777653
Q ss_pred CcccceeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 545 SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 545 ~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
..++++|.|||++++. |++ +++.|++|+++..
T Consensus 364 ~~~v~~~~aGdI~~i~--gl~--~~~~GdtL~~~~~ 395 (693)
T PRK00007 364 REEIKEVRAGDIAAAV--GLK--DTTTGDTLCDEKN 395 (693)
T ss_pred cccccccCCCcEEEEe--CCc--cCCcCCEeeCCCC
Confidence 5789999999999886 663 5689999987653
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.97 E-value=1.8e-30 Score=303.08 Aligned_cols=271 Identities=26% Similarity=0.347 Sum_probs=208.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.+||+|+||+|+|||||+++|++..+.+.... . ... -.+.+|..+.|+++|+|++.....+.++++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~--~-------v~~----~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 73 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG--E-------VHD----GAATMDWMEQEQERGITITSAATTCFWKGH 73 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccc--c-------ccC----CccccCCChhHhhcCCCccceeEEEEECCE
Confidence 578999999999999999999998777653210 0 001 146899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
+++|||||||.+|...+..++..+|++|+|||+..+ +..|++.++.++...++| +|+++||||+...+
T Consensus 74 ~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~--- 141 (691)
T PRK12739 74 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD--- 141 (691)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 999999999999999999999999999999999987 467999999999999999 78999999998533
Q ss_pred hhHHHHHHhhhhhhcCcC--------------------------------------------------------------
Q 005973 425 FDSIKVQLGTFLRSCGFK-------------------------------------------------------------- 442 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~-------------------------------------------------------------- 442 (666)
+..+.+++...+....+.
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~d 221 (691)
T PRK12739 142 FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVD 221 (691)
T ss_pred HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 333444444433211000
Q ss_pred ----------------------------CCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCCCC----
Q 005973 443 ----------------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR---- 489 (666)
Q Consensus 443 ----------------------------~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~---- 489 (666)
..-+|++..||+++.|+ ..||++|.. +|.|..
T Consensus 222 d~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv---------------~~LLd~I~~~lPsP~~~~~~ 286 (691)
T PRK12739 222 EELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGV---------------QPLLDAVVDYLPSPLDVPAI 286 (691)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccH---------------HHHHHHHHHHCCChhhcccc
Confidence 01123333344444444 348999844 554421
Q ss_pred ---------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccc
Q 005973 490 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCS 549 (666)
Q Consensus 490 ---------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~ 549 (666)
+.+.||.+.|++++..+ .|.+ +++||++|+|+.||.|+....++..+|..|.. ...+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 365 (691)
T PRK12739 287 KGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRL-TFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIK 365 (691)
T ss_pred ccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeE-EEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCccccc
Confidence 23568999999999888 7988 89999999999999998776666777877764 257899
Q ss_pred eeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 550 VARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 550 ~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
+|.|||+++|. |++ +++.|++|++...
T Consensus 366 ~~~aGdI~~i~--gl~--~~~~gdtl~~~~~ 392 (691)
T PRK12739 366 EVYAGDIAAAV--GLK--DTTTGDTLCDEKA 392 (691)
T ss_pred ccCCCCEEEEe--CCC--cccCCCEEeCCCC
Confidence 99999999887 664 4789999987653
No 48
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7e-30 Score=292.63 Aligned_cols=350 Identities=27% Similarity=0.327 Sum_probs=260.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
..+.+||+|+||++||||||..+|++..|.+.... ....| +..+|..+.|++||+|+..+...+.+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G---------~v~~g----~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG---------EVHDG----AATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc---------cccCC----CccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 45678999999999999999999999988876521 00111 347999999999999999999999999
Q ss_pred C-eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 343 ~-~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
+ +.|+|||||||.+|.....+.++.+|++|+||||..| .++|+...++++...++| .|+++||||+...+
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~ 144 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKYGVP-RILFVNKMDRLGAD 144 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhcCCC-eEEEEECccccccC
Confidence 5 9999999999999999999999999999999999998 478999999999999999 79999999998543
Q ss_pred chhhhHHHHHHhhhhhh----cCc--------C-----------------------------------------------
Q 005973 422 KDRFDSIKVQLGTFLRS----CGF--------K----------------------------------------------- 442 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~----~~~--------~----------------------------------------------- 442 (666)
... ..+++...|.. .+. .
T Consensus 145 ~~~---~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~d 221 (697)
T COG0480 145 FYL---VVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFD 221 (697)
T ss_pred hhh---hHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcC
Confidence 221 22222222211 000 0
Q ss_pred ----------------------------CCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCC----
Q 005973 443 ----------------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR---- 489 (666)
Q Consensus 443 ----------------------------~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~---- 489 (666)
...+|.+.-||..+.|+ ..||+++ +.+|.|..
T Consensus 222 e~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv---------------~~lLdav~~~lPsP~e~~~~ 286 (697)
T COG0480 222 EELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGV---------------QPLLDAVVDYLPSPLDVPPI 286 (697)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcH---------------HHHHHHHHHHCCChhhcccc
Confidence 00112222333333222 4588887 45555411
Q ss_pred ----------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----Cccc
Q 005973 490 ----------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSC 548 (666)
Q Consensus 490 ----------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v 548 (666)
+.+.||.+.++++...+ .|.+ .++||.||+|+.|+.|+....+++.+|..|... +.++
T Consensus 287 ~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l-~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v 365 (697)
T COG0480 287 KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKL-TFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEV 365 (697)
T ss_pred cccCCccccchhcccCCCCCceEEEEEEeEecCCCCeE-EEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeec
Confidence 23689999999999988 8998 679999999999999999888888888888753 5789
Q ss_pred ceeccCCceeEEeeccCcCccccccEEecCCCCcc-eeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEee
Q 005973 549 SVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVA-IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLL 627 (666)
Q Consensus 549 ~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~-~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~l 627 (666)
+++.||++|++. |++ +...|++||+.+.++. ....|- .+++--...|-.+..+..|..+..+.+.....+....
T Consensus 366 ~~~~AG~I~a~~--Gl~--~~~tGdTl~~~~~~v~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~ 440 (697)
T COG0480 366 DEVPAGDIVALV--GLK--DATTGDTLCDENKPVILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVET 440 (697)
T ss_pred ccccCccEEEEE--ccc--ccccCCeeecCCCccccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEE
Confidence 999999999987 774 4578999998773222 222332 4444334456666667777777778888888999999
Q ss_pred ccCcCcccccCCcccC-------CCCeEEEEEEeCceE
Q 005973 628 DTKTGKVTKKSPRCLT-------AKQSAIVEVNQSQNT 658 (666)
Q Consensus 628 D~~tg~~~k~~p~~L~-------~g~~a~v~l~l~~pI 658 (666)
|.+||+++......|. ......|++....|.
T Consensus 441 d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~Pq 478 (697)
T COG0480 441 DEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQ 478 (697)
T ss_pred cCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCe
Confidence 9999999987777662 223355666666554
No 49
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.97 E-value=6.4e-30 Score=298.54 Aligned_cols=272 Identities=28% Similarity=0.349 Sum_probs=205.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.+||+|+||+|+|||||+++|++..+.+.... . .....+.+|..+.|+++|+|++.....+++++
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~--~-----------~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~ 74 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIG--E-----------VHDGAATMDWMEQEKERGITITSAATTVFWKG 74 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccc--c-----------ccCCccccCCCHHHHhcCCCEecceEEEEECC
Confidence 3578999999999999999999998777653211 0 01134789999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
++++|||||||.+|...+..++..+|++|||||+..+ ...++.+++.++...++| +|+|+||||+...+
T Consensus 75 ~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~-- 143 (689)
T TIGR00484 75 HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN-- 143 (689)
T ss_pred eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 356888999999999999 78999999998543
Q ss_pred hhhHHHHHHhhhhhhcCc--------------------------------------------------------------
Q 005973 424 RFDSIKVQLGTFLRSCGF-------------------------------------------------------------- 441 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~-------------------------------------------------------------- 441 (666)
+..+.+++...+....+
T Consensus 144 -~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~d 222 (689)
T TIGR00484 144 -FLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFD 222 (689)
T ss_pred -HHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 22333344333321110
Q ss_pred ---------------------------CCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhh-hcCCCCC----
Q 005973 442 ---------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---- 489 (666)
Q Consensus 442 ---------------------------~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~-~l~~~~~---- 489 (666)
....+|++..||++|.|+ ..||++|. .+|.|..
T Consensus 223 d~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv---------------~~LLd~I~~~lPsP~~~~~~ 287 (689)
T TIGR00484 223 EELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGV---------------QLLLDAVVDYLPSPTDVPAI 287 (689)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccH---------------HHHHHHHHHHCCCchhcccc
Confidence 001122233334444443 45999984 4554421
Q ss_pred ---------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----Ccccc
Q 005973 490 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCS 549 (666)
Q Consensus 490 ---------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~ 549 (666)
+.+.||.+.|+++...+ .|.+ +++||++|+|+.||+|+..-.+...+|..|... ..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~ 366 (689)
T TIGR00484 288 KGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQL-TFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIK 366 (689)
T ss_pred cccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeE-EEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCccccc
Confidence 12568999999999888 8887 899999999999999997766666677676543 46899
Q ss_pred eeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 550 VARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 550 ~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
.|.|||+++|. |++ ++..|++|+++..
T Consensus 367 ~~~aGdI~~i~--gl~--~~~~gdtl~~~~~ 393 (689)
T TIGR00484 367 EVRAGDICAAI--GLK--DTTTGDTLCDPKI 393 (689)
T ss_pred ccCCCCEEEEc--CCC--CCCCCCEEeCCCC
Confidence 99999999886 663 5678999987653
No 50
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.96 E-value=4.7e-29 Score=281.10 Aligned_cols=278 Identities=25% Similarity=0.338 Sum_probs=210.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+..+|+|+||+|+|||||+++|++..+.+....-. .++.. .....+|..+.|+++|+|+......+++.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~~-~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRKS-GRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------ecccc-CccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 457899999999999999999999887776433210 01110 111236888999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
+.++|||||||.+|...+..++..+|++|+|||+..+ +..++...+.++...++| +|+++||||+...+..
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~ 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPL 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccCHH
Confidence 9999999999999999999999999999999999987 356888999999999999 9999999998753321
Q ss_pred -hhhHHHHHHhh-----------------------------------------------------hhhh-----------
Q 005973 424 -RFDSIKVQLGT-----------------------------------------------------FLRS----------- 438 (666)
Q Consensus 424 -~~~~i~~el~~-----------------------------------------------------~l~~----------- 438 (666)
.++++...+.. ++..
T Consensus 150 ~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~le 229 (526)
T PRK00741 150 ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELE 229 (526)
T ss_pred HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHH
Confidence 12222222111 0000
Q ss_pred ------------cCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhc-CCCCCC---------CCCCce
Q 005973 439 ------------CGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL-RPPPRE---------FSKPLL 496 (666)
Q Consensus 439 ------------~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l-~~~~~~---------~~~p~~ 496 (666)
.-.....+|++..||++|.|+.. ||++|..+ |.|... ...+|.
T Consensus 230 l~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~ 294 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE---------------FLDAFVEWAPAPQPRQTDEREVEPTEEKFS 294 (526)
T ss_pred hhhhcccchhHHHHhcCCeEEEEEeecccCcCHHH---------------HHHHHHHHCCCCCcccccceeecCCCCceE
Confidence 00001225788889999999854 99998554 444211 235688
Q ss_pred eeEEeEee---cC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceeccCCceeEEeeccCcCc
Q 005973 497 MPICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSR 568 (666)
Q Consensus 497 ~~I~~v~~---~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~ 568 (666)
..|+++.. .+ .|.+ ++.||.+|+|+.|+.|+....++..+|..+.. .+..+++|.|||+|+|. + ..+
T Consensus 295 ~~VFK~~~~m~~~~~grl-afvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~--~--l~~ 369 (526)
T PRK00741 295 GFVFKIQANMDPKHRDRI-AFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH--N--HGT 369 (526)
T ss_pred EEEEEEEecCCCCcCceE-EEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE--C--CCC
Confidence 88888873 34 8988 89999999999999999988888888877654 35789999999999987 4 467
Q ss_pred cccccEEecCC
Q 005973 569 VMSGGVLCHPD 579 (666)
Q Consensus 569 i~~G~VL~~~~ 579 (666)
++.|++||..+
T Consensus 370 ~~~GDTL~~~~ 380 (526)
T PRK00741 370 IQIGDTFTQGE 380 (526)
T ss_pred CccCCCccCCC
Confidence 88999999754
No 51
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.96 E-value=4.2e-29 Score=281.48 Aligned_cols=275 Identities=23% Similarity=0.307 Sum_probs=209.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+||+|+|||||+++|++..+.+..... ..+++....+ .+|..+.|+++|+|+......+++.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~~~t-~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQRHA-KSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------eccccccccc-cCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 45789999999999999999999988777654321 1122222222 47889999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..++|||||||.+|...+..++..+|++|+|||+..+ +..++..++.+++..++| +|+++||+|+...+..
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~ 150 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPL 150 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECccccCCCHH
Confidence 9999999999999999999999999999999999887 356888888888888998 9999999998643322
Q ss_pred hhhHHHHHHhhhhhhcC---------------------------------------------------------------
Q 005973 424 RFDSIKVQLGTFLRSCG--------------------------------------------------------------- 440 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~--------------------------------------------------------------- 440 (666)
. +.+++...+....
T Consensus 151 ~---ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 227 (527)
T TIGR00503 151 E---LLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRD 227 (527)
T ss_pred H---HHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHH
Confidence 1 2222222211000
Q ss_pred -----------------cCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhc-CCCCCC---------CCC
Q 005973 441 -----------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL-RPPPRE---------FSK 493 (666)
Q Consensus 441 -----------------~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l-~~~~~~---------~~~ 493 (666)
....-+|++..||+++.|+. .||++|..+ |.|... ...
T Consensus 228 ~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~---------------~LLd~i~~~~PsP~~~~~~~~~~~~~~~ 292 (527)
T TIGR00503 228 ELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVD---------------HFLDGLLQWAPKPEARQSDTRTVEPTEE 292 (527)
T ss_pred HHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHH---------------HHHHHHHHHCCCCccccCCceecCCCCC
Confidence 00122356677777777774 499998554 444321 245
Q ss_pred CceeeEEeEee--c-C-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceeccCCceeEEeeccC
Q 005973 494 PLLMPICDVLK--S-Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGID 565 (666)
Q Consensus 494 p~~~~I~~v~~--~-~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid 565 (666)
+|...|+++.. . + .|.+ ++.||.||+|+.|++|+....++..+|..+.. .+.++++|.|||+++|. +
T Consensus 293 ~~~~~VFK~~~~mdp~~~gri-af~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~--~-- 367 (527)
T TIGR00503 293 KFSGFVFKIQANMDPKHRDRV-AFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH--N-- 367 (527)
T ss_pred CeeEEEEEEEeccCcccCceE-EEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE--C--
Confidence 78888888876 4 4 8998 89999999999999999988888888887764 35789999999999887 4
Q ss_pred cCccccccEEecCC
Q 005973 566 VSRVMSGGVLCHPD 579 (666)
Q Consensus 566 ~~~i~~G~VL~~~~ 579 (666)
...++.|++||...
T Consensus 368 ~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 368 HGTIQIGDTFTQGE 381 (527)
T ss_pred CCCcccCCEecCCC
Confidence 46788999999843
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.96 E-value=3.5e-28 Score=280.32 Aligned_cols=249 Identities=26% Similarity=0.324 Sum_probs=191.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~- 341 (666)
..+.++|+|+||+|||||||+++|+..... ....+|+|++.....+.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEEE
Confidence 357789999999999999999999843221 122357777766555443
Q ss_pred ---CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 342 ---~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.+..++|||||||..|..++.+++..+|++|||||+..+ .+.|+.+++..+...++| +|||+||+|+.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 358899999999999999999999999999999999887 467999999999999999 99999999997
Q ss_pred cccchhhhHHHHHHhhh---hhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcC---CCCCCCC
Q 005973 419 QYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR---PPPREFS 492 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~---l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~---~~~~~~~ 492 (666)
..+ ++.+.+++..+ ...++ ..++++++||++|.|+.+ |++.|..+. ....+..
T Consensus 361 ~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIde---------------Lle~I~~l~e~~~lk~~~~ 419 (742)
T CHL00189 361 NAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDK---------------LLETILLLAEIEDLKADPT 419 (742)
T ss_pred ccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHH---------------HHHhhhhhhhhhcccCCCC
Confidence 533 23333333321 12222 246899999999999966 666653322 2223445
Q ss_pred CCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee-cCcccceeccCCceeEEeeccCcCccc
Q 005973 493 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 493 ~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
.|+...|.++...+ .|.+ ++|+|.+|+|+.||.|+++| ...+|++|.. ....+..|.||++|.+. |++ ....
T Consensus 420 ~~~~g~V~e~~iD~~~G~V-~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~ 493 (742)
T CHL00189 420 QLAQGIILEAHLDKTKGPV-ATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPA 493 (742)
T ss_pred CCceEEEEEEEEcCCCceE-EEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCC
Confidence 68888888888777 8998 89999999999999999998 4689999985 47899999999999885 663 2355
Q ss_pred cccEEecC
Q 005973 571 SGGVLCHP 578 (666)
Q Consensus 571 ~G~VL~~~ 578 (666)
.|+.|.-.
T Consensus 494 ~Gd~l~v~ 501 (742)
T CHL00189 494 TGEHFQVF 501 (742)
T ss_pred CCCEEEEe
Confidence 68888654
No 53
>PRK13351 elongation factor G; Reviewed
Probab=99.96 E-value=5.4e-29 Score=291.16 Aligned_cols=271 Identities=28% Similarity=0.393 Sum_probs=209.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..+||+|+||+|+|||||+++|++..+.+..... ...+ .+.+|....|+++|+|+......+.+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~---------v~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~ 73 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE---------VEDG----TTVTDWMPQEQERGITIESAATSCDWDNH 73 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCcccccc---------ccCC----cccCCCCHHHHhcCCCcccceEEEEECCE
Confidence 4689999999999999999999987776543210 0011 24578888999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.++|||||||.+|...+..++..+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+...+
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~--- 141 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIP-RLIFINKMDRVGAD--- 141 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC---
Confidence 999999999999999999999999999999999987 346788888888889998 89999999987532
Q ss_pred hhHHHHHHhhhhhhc--------------------------Cc-------------------------------------
Q 005973 425 FDSIKVQLGTFLRSC--------------------------GF------------------------------------- 441 (666)
Q Consensus 425 ~~~i~~el~~~l~~~--------------------------~~------------------------------------- 441 (666)
+....+++...+... .|
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (687)
T PRK13351 142 LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFD 221 (687)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222222221110 00
Q ss_pred ---------------------------CCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCCCC----
Q 005973 442 ---------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR---- 489 (666)
Q Consensus 442 ---------------------------~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~---- 489 (666)
...-+|++..||++|.|+. .||++|.. +|.|..
T Consensus 222 ~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~---------------~LLd~I~~~lPsP~~~~~~ 286 (687)
T PRK13351 222 DELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIE---------------PLLDAVVDYLPSPLEVPPP 286 (687)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHH---------------HHHHHHHHHCCChhhcccc
Confidence 0012456667999999984 39999844 555431
Q ss_pred --------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----Ccccce
Q 005973 490 --------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSV 550 (666)
Q Consensus 490 --------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~ 550 (666)
+.+.|+.+.|++++..+ .|.+ +++||.+|+|+.||+|++.+.+...+|..|... ..++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 365 (687)
T PRK13351 287 RGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL-TYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDR 365 (687)
T ss_pred cccCCCCCceeecCCCCCCeEEEEEEeeecCCCceE-EEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCc
Confidence 23578999999999888 8988 899999999999999999988777777777543 578999
Q ss_pred eccCCceeEEeeccCcCccccccEEecCCC
Q 005973 551 ARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 551 A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
|.|||++++. |++ ++..|++|+....
T Consensus 366 ~~aGdI~~i~--gl~--~~~~gdtl~~~~~ 391 (687)
T PRK13351 366 AKAGDIVAVA--GLK--ELETGDTLHDSAD 391 (687)
T ss_pred cCCCCEEEEE--Ccc--cCccCCEEeCCCC
Confidence 9999998876 664 5677999997653
No 54
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.3e-28 Score=262.93 Aligned_cols=252 Identities=23% Similarity=0.278 Sum_probs=201.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~- 341 (666)
..+++.|.|+||+++|||||+.+|-....+..+ ..|||.+++.+.+..
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-------------------------------~GGITQhIGAF~V~~p 198 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-------------------------------AGGITQHIGAFTVTLP 198 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhh-------------------------------cCCccceeceEEEecC
Confidence 457889999999999999999999844222211 148999998887765
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..++|+|||||..|..+..+|+..+|.+||||.|.+| +++||.|.+..++..++| +||++||+|+++.+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG--------VmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG--------VMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN 269 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC--------ccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC
Confidence 678999999999999999999999999999999999998 589999999999999999 99999999999776
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhh---hcCCCCCCCCCCceee
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSKPLLMP 498 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~---~l~~~~~~~~~p~~~~ 498 (666)
.++...-.....-.++.+| .++++||+||++|+|+.. |.++|. .+..-..+...|+...
T Consensus 270 pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~---------------L~eaill~Ae~mdLkA~p~g~~eg~ 331 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDL---------------LEEAILLLAEVMDLKADPKGPAEGW 331 (683)
T ss_pred HHHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHH---------------HHHHHHHHHHHhhcccCCCCCceEE
Confidence 6653222222233344555 578999999999999955 666652 2233344567888888
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec-CcccceeccCCceeEEeeccCcCccccccEEe
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~ 576 (666)
|-+..-.+ +|.+ ++.-|..|+|++|+.++.+ ....+|+++..+ .+++++|.|++.|.+. |+. .--..||-+.
T Consensus 332 VIES~vdkg~G~~-aT~iVkrGTLkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V~--Gwk-dlP~aGD~vl 405 (683)
T KOG1145|consen 332 VIESSVDKGRGPV-ATVIVKRGTLKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEVL--GWK-DLPIAGDEVL 405 (683)
T ss_pred EEEeeecCCccce-eEEEEeccccccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEee--ccc-CCCCCCceEE
Confidence 88887777 9999 8999999999999999987 668999999865 7899999999999887 664 1223577665
Q ss_pred cC
Q 005973 577 HP 578 (666)
Q Consensus 577 ~~ 578 (666)
..
T Consensus 406 eV 407 (683)
T KOG1145|consen 406 EV 407 (683)
T ss_pred EE
Confidence 43
No 55
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.96 E-value=5.2e-29 Score=291.61 Aligned_cols=349 Identities=22% Similarity=0.275 Sum_probs=232.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE----Ee
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY----FD 340 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~----~~ 340 (666)
..+||+|+||+|+|||||+++|++..|.+.... .|. .+.+|...+|+++|+|+...... ++
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~ 82 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AGQ-----QLYLDFDEQEQERGITINAANVSMVHEYE 82 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CCc-----eeecCCCHHHHhhcchhhcccceeEEeec
Confidence 568999999999999999999998888775421 111 35678889999999999866543 56
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
+.++.++|||||||.+|...+..++..+|++|+|+|+..+ +..++.+++..+...++| +|+|+||||+...
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 153 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVK-PVLFINKVDRLIN 153 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCC-EEEEEEChhcccc
Confidence 7889999999999999999999999999999999999887 356888999888888998 6899999998742
Q ss_pred c--------chhhhHHHHHHhhhhhhc---------CcCCCCCcEEEeecccCCCcccC------CCCcc----------
Q 005973 421 S--------KDRFDSIKVQLGTFLRSC---------GFKDASLTWIPLSALENQNLVTA------PDDGR---------- 467 (666)
Q Consensus 421 ~--------~e~~~~i~~el~~~l~~~---------~~~~~~i~iIpvSA~tG~nI~e~------~~~~~---------- 467 (666)
+ .+++..+...+..++... -+..........|++.+++..-. .+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 233 (720)
T TIGR00490 154 ELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQ 233 (720)
T ss_pred hhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccH
Confidence 2 223333333333343221 01000111233445444322100 00000
Q ss_pred --ccccCC-cccHHHHhh-hcCCCCC-------------------------CCCCCceeeEEeEeecC-CCeEEEEEEEE
Q 005973 468 --LLSWYK-GPCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLE 517 (666)
Q Consensus 468 --~~~Wy~-g~~LL~~L~-~l~~~~~-------------------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~ 517 (666)
+..|+- -..||++|. .+|.|.. +.+.||...|+++...+ .|.+ ++|||.
T Consensus 234 ~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i-a~~RV~ 312 (720)
T TIGR00490 234 KELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV-AVGRLY 312 (720)
T ss_pred HHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE-EEEEEE
Confidence 001211 135777774 3444421 12458999999998877 8988 999999
Q ss_pred eeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCcCccccccEEecCCCCcce-e-eEEEEE
Q 005973 518 AGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAI-A-THLELK 591 (666)
Q Consensus 518 sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~~-~-~~F~a~ 591 (666)
+|+|++||.|++.+.+...+|+.|... ..+++.|.|||+|+|. |++ ++.+|++||+++.+... . ..+...
T Consensus 313 sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~GdtL~~~~~~~~~~~~~~~~~~ 388 (720)
T TIGR00490 313 SGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVI--GLK--DAVAGETICTTVENITPFESIKHISE 388 (720)
T ss_pred eCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEE--Ccc--ccccCceeecCCcccccCcccccCCC
Confidence 999999999999999988999998754 4689999999999886 653 56789999986543211 1 111112
Q ss_pred EEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCccc
Q 005973 592 VLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCL 642 (666)
Q Consensus 592 i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L 642 (666)
+++.-...|..++....|.-+..+..-....+....|..||+.+......|
T Consensus 389 Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GEl 439 (720)
T TIGR00490 389 PVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGEL 439 (720)
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccce
Confidence 222222233333333334434444444555666667777777776555443
No 56
>PRK12740 elongation factor G; Reviewed
Probab=99.96 E-value=3.1e-28 Score=284.20 Aligned_cols=264 Identities=28% Similarity=0.393 Sum_probs=205.7
Q ss_pred EeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEEEeC
Q 005973 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (666)
Q Consensus 272 iG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~liDT 351 (666)
+||+|+|||||+++|++..+.+....- ...+ .+.+|....|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~---------~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGE---------VEDG----TTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCcc---------ccCC----cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 699999999999999998887654210 0011 267899999999999999999999999999999999
Q ss_pred CCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHH
Q 005973 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQ 431 (666)
Q Consensus 352 PGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~e 431 (666)
|||.+|...+..++..+|++|+|||+..+ ...++..++..+...++| +|+|+||+|+.... +..+.++
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~---~~~~~~~ 135 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD---FFRVLAQ 135 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHHHHHH
Confidence 99999999999999999999999999886 346788888888889998 88999999987432 2222223
Q ss_pred Hhhhhhh-------------------------------------------------------------------------
Q 005973 432 LGTFLRS------------------------------------------------------------------------- 438 (666)
Q Consensus 432 l~~~l~~------------------------------------------------------------------------- 438 (666)
+...+..
T Consensus 136 l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~ 215 (668)
T PRK12740 136 LQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEG 215 (668)
T ss_pred HHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC
Confidence 3222110
Q ss_pred cC--------------cCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCCCC--------------
Q 005973 439 CG--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPR-------------- 489 (666)
Q Consensus 439 ~~--------------~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~-------------- 489 (666)
.. ....-+|++..||++|.|+.. ||++|.. +|.|..
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsp~~~~~~~~~~~~~~~~ 280 (668)
T PRK12740 216 EELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQR---------------LLDAVVDYLPSPLEVPPVDGEDGEEGAE 280 (668)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH---------------HHHHHHHHCCChhhcccccCCCCccccc
Confidence 00 001124677789999999954 8999854 555521
Q ss_pred ---CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceeccCCceeEEe
Q 005973 490 ---EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSL 561 (666)
Q Consensus 490 ---~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L 561 (666)
+.+.|+.+.|++++..+ .|.+ +.+||.+|+|++||+|++.+.++..+|..|.. ...++++|.|||++++.
T Consensus 281 ~~~~~~~~l~a~v~k~~~~~~~G~i-~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~- 358 (668)
T PRK12740 281 LAPDPDGPLVALVFKTMDDPFVGKL-SLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA- 358 (668)
T ss_pred cccCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe-
Confidence 33578999999999888 7988 89999999999999999998876666666653 35789999999999987
Q ss_pred eccCcCccccccEEecCCC
Q 005973 562 QGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 562 ~gid~~~i~~G~VL~~~~~ 580 (666)
|++ .+..|++|++...
T Consensus 359 -gl~--~~~~Gdtl~~~~~ 374 (668)
T PRK12740 359 -KLK--DAATGDTLCDKGD 374 (668)
T ss_pred -ccC--ccCCCCEEeCCCC
Confidence 764 5889999987553
No 57
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.95 E-value=4e-27 Score=268.61 Aligned_cols=255 Identities=22% Similarity=0.325 Sum_probs=183.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
..+++.|+|+||+|||||||+++|.+....- ....|+|.+.+...+...
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~-------------------------------~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAA-------------------------------KEAGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCccccc-------------------------------CCCCceEEeeceeecccc
Confidence 3467889999999999999999997432110 001233333322222110
Q ss_pred ------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC
Q 005973 343 ------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (666)
Q Consensus 343 ------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg 404 (666)
-..++|||||||++|...+.+++..+|++|||||++.+ +.+|+.+++.++...+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~ 123 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRK 123 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcC
Confidence 01278999999999999999999999999999999987 4679999999999999
Q ss_pred CCcEEEEEeccccc-ccc------------------chhhhHHHHHHhhhhhhcCcCC----------CCCcEEEeeccc
Q 005973 405 VDQLIVAVNKMDAV-QYS------------------KDRFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALE 455 (666)
Q Consensus 405 ip~iIVViNK~Dlv-~~~------------------~e~~~~i~~el~~~l~~~~~~~----------~~i~iIpvSA~t 455 (666)
+| +|+|+||+|+. .|. ...|+....++...|...++.. ..++++|+||++
T Consensus 124 vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 124 TP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred CC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 99 99999999985 333 1233334444555566666543 357899999999
Q ss_pred CCCcccCCCCccccccCCcccHHHHhh----h-cC-CCCCCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEE
Q 005973 456 NQNLVTAPDDGRLLSWYKGPCLLDAID----S-LR-PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVL 528 (666)
Q Consensus 456 G~nI~e~~~~~~~~~Wy~g~~LL~~L~----~-l~-~~~~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~ 528 (666)
|+|+.+ |++.|. . ++ ....+.+.|++++|.+++..+ .|++ ++|+|.+|+|++||.|+
T Consensus 203 GeGi~d---------------Ll~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v-~~~~v~~GtL~~Gd~vv 266 (586)
T PRK04004 203 GEGIPD---------------LLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTT-IDVILYDGTLRKGDTIV 266 (586)
T ss_pred CCChHH---------------HHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceE-EEEEEEcCEEECCCEEE
Confidence 999966 444442 1 22 123445789999999999988 9998 99999999999999999
Q ss_pred EcCCCc--eEEEeeeeecC------------cccceeccCCceeEEeeccCcCccccccEE
Q 005973 529 VLPSGE--VGTVHSIERDS------------QSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 529 v~P~~~--~~~VksI~~~~------------~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
++|.+. ..+|++|..+. ..+..|.|...|.+...|++ .+..|+-+
T Consensus 267 ~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~--~~~~g~~~ 325 (586)
T PRK04004 267 VGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLE--DALAGSPL 325 (586)
T ss_pred ECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcc--ccCCCCeE
Confidence 999874 56999998752 45666767666665433543 23445544
No 58
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=5.5e-28 Score=238.56 Aligned_cols=181 Identities=39% Similarity=0.639 Sum_probs=154.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--cC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SK 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~~ 342 (666)
+.++|+++||+|+|||||+++|++..+.+......+ .....++....|+++|+|++.....+. ..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~ 68 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNEN 68 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTES
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhccccccccccccccccc
Confidence 578999999999999999999999888776654332 112347888999999999999999998 89
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
++.++|+|||||.+|...+..++..+|++|+|||+..| +..|+.+++.++..+++| +|||+||||+. .
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---~ 136 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRELGIP-IIVVLNKMDLI---E 136 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHHTT-S-EEEEEETCTSS---H
T ss_pred ccceeecccccccceeecccceecccccceeeeecccc--------cccccccccccccccccc-eEEeeeeccch---h
Confidence 99999999999999999999999999999999999987 468999999999999999 99999999998 5
Q ss_pred hhhhHHHHHHh-hhhhhcCcCC-CCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcC
Q 005973 423 DRFDSIKVQLG-TFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR 485 (666)
Q Consensus 423 e~~~~i~~el~-~~l~~~~~~~-~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~ 485 (666)
.++.++.+++. .+++..++.. ..++++|+||++|.|+.+ |+++|....
T Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~---------------Ll~~l~~~~ 186 (188)
T PF00009_consen 137 KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE---------------LLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH---------------HHHHHHHHS
T ss_pred hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH---------------HHHHHHHhC
Confidence 66666777777 6667777765 368999999999999965 899885543
No 59
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.3e-27 Score=254.43 Aligned_cols=236 Identities=25% Similarity=0.370 Sum_probs=187.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
.+++.|.++||++||||||+..+-.....- .-..|+|.+++.+.+...
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-------------------------------~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-------------------------------GEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc-------------------------------ccCCceeeEeeeEEEEecc
Confidence 367889999999999999999997432211 112589999999999874
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 --~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
...++|+|||||+.|..+..+|+..+|++|||||+.+| +++||.|.+..++..++| |||++||||+++.
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~ 122 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKAAGVP-IVVAINKIDKPEA 122 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHHCCCC-EEEEEecccCCCC
Confidence 46899999999999999999999999999999999998 689999999999999999 9999999999965
Q ss_pred cchhhhHHHHHHhhh---hhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhh---hcCCCCCCCCCC
Q 005973 421 SKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSKP 494 (666)
Q Consensus 421 ~~e~~~~i~~el~~~---l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~---~l~~~~~~~~~p 494 (666)
+..+ +..++.+. ...|+ ..+.++|+||++|+|+.+ ||+.|. ....-....+.+
T Consensus 123 np~~---v~~el~~~gl~~E~~g---g~v~~VpvSA~tg~Gi~e---------------LL~~ill~aev~elka~~~~~ 181 (509)
T COG0532 123 NPDK---VKQELQEYGLVPEEWG---GDVIFVPVSAKTGEGIDE---------------LLELILLLAEVLELKANPEGP 181 (509)
T ss_pred CHHH---HHHHHHHcCCCHhhcC---CceEEEEeeccCCCCHHH---------------HHHHHHHHHHHHhhhcCCCCc
Confidence 5544 33333332 22222 347899999999999966 777662 222333455678
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec-CcccceeccCCceeEEeeccC
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGID 565 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid 565 (666)
.+-.|-++...+ .|.+ ++--|..|+|++||.|.++ ....+|+.+... ..++..|.++..+.+. |++
T Consensus 182 a~gtviE~~~dkG~G~v-atviv~~GtL~~GD~iv~g--~~~g~I~t~v~~~~~~i~~a~ps~~v~i~--g~~ 249 (509)
T COG0532 182 ARGTVIEVKLDKGLGPV-ATVIVQDGTLKKGDIIVAG--GEYGRVRTMVDDLGKPIKEAGPSKPVEIL--GLS 249 (509)
T ss_pred ceEEEEEEEeccCCCce-EEEEEecCeEecCCEEEEc--cCCCceEEeehhcCCCccccCCCCCeEEe--ccc
Confidence 888888888888 9998 8999999999999999998 446678887754 6788888888776654 553
No 60
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=1.3e-26 Score=263.58 Aligned_cols=254 Identities=25% Similarity=0.367 Sum_probs=179.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
+.+.|+|+||+|||||||+++|++..... ....|+|.+++...+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~-------------------------------~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK-------------------------------REAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc-------------------------------ccCCceecccCeeEeeeccc
Confidence 56779999999999999999998541110 111234544333333221
Q ss_pred ----------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC
Q 005973 343 ----------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (666)
Q Consensus 343 ----------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip 406 (666)
...++|||||||+.|...+..++..+|++|||+|++++ +..|+.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC
Confidence 12488999999999999999999999999999999987 457899999999999998
Q ss_pred cEEEEEecccccc-ccch---hh--------hHHH-------HHHhhhhhhcCcCC----------CCCcEEEeecccCC
Q 005973 407 QLIVAVNKMDAVQ-YSKD---RF--------DSIK-------VQLGTFLRSCGFKD----------ASLTWIPLSALENQ 457 (666)
Q Consensus 407 ~iIVViNK~Dlv~-~~~e---~~--------~~i~-------~el~~~l~~~~~~~----------~~i~iIpvSA~tG~ 457 (666)
+|+|+||+|+.. |... .| ..+. ..+...+...++.. ..++++|+||++|+
T Consensus 124 -iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 -FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred -EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 999999999973 2110 00 0111 11112233334332 35799999999999
Q ss_pred CcccCCCCccccccCCcccHHHHhhh-----cC-CCCCCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEc
Q 005973 458 NLVTAPDDGRLLSWYKGPCLLDAIDS-----LR-PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVL 530 (666)
Q Consensus 458 nI~e~~~~~~~~~Wy~g~~LL~~L~~-----l~-~~~~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~ 530 (666)
|+.+ |++.|.. ++ ....+.+.|++++|.+++..+ .|++ ++|.|.+|+|++||.|+++
T Consensus 203 Gide---------------Ll~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v-~t~~v~~G~l~~GD~iv~~ 266 (590)
T TIGR00491 203 GIPE---------------LLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMT-IDAVIYDGILRKGDTIAMA 266 (590)
T ss_pred ChhH---------------HHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceE-EEEEEEcCEEeCCCEEEEc
Confidence 9976 4444421 11 122345789999999999998 9998 8999999999999999999
Q ss_pred CCCc--eEEEeeeeecC------------cccceeccCCceeEEeeccCcCccccccEEe
Q 005973 531 PSGE--VGTVHSIERDS------------QSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (666)
Q Consensus 531 P~~~--~~~VksI~~~~------------~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~ 576 (666)
|... ..+|++|...+ ..+.+|.|..-|-+...|++. ...|+.+.
T Consensus 267 ~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~~ 324 (590)
T TIGR00491 267 GSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPIR 324 (590)
T ss_pred cCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEEE
Confidence 9874 68999998653 355666666656555555542 34566553
No 61
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.2e-27 Score=260.13 Aligned_cols=336 Identities=25% Similarity=0.346 Sum_probs=257.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+..||+|+.|.++|||||..++++..|.+..-.. ..++ ...||....||++|||+..+..++.|.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e--------v~~~-----~a~md~m~~er~rgITiqSAAt~~~w~~ 103 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE--------VRGG-----GATMDSMELERQRGITIQSAATYFTWRD 103 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccc--------cccC-----ceeeehHHHHHhcCceeeeceeeeeecc
Confidence 46789999999999999999999988776533210 1122 3568999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
++++|||||||.+|.-...++++..|++|+|+|+..| .+.|+...+.+++..++| .|..+||||+.+.+..
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G--------VqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG--------VESQTETVWRQMKRYNVP-RICFINKMDRMGASPF 174 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc--------eehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChH
Confidence 9999999999999999999999999999999999998 478999999999999999 6889999998754421
Q ss_pred hh-hHHH-------------------------------------------------------------------------
Q 005973 424 RF-DSIK------------------------------------------------------------------------- 429 (666)
Q Consensus 424 ~~-~~i~------------------------------------------------------------------------- 429 (666)
+. +.+.
T Consensus 175 ~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l 254 (721)
T KOG0465|consen 175 RTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETL 254 (721)
T ss_pred HHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11 1110
Q ss_pred ------------HHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCC-------
Q 005973 430 ------------VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR------- 489 (666)
Q Consensus 430 ------------~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~------- 489 (666)
++|...++..-+....+|++.-||+.+.|+. .||+++ +.+|.|..
T Consensus 255 ~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQ---------------PlLDAVvdYLPsP~Ev~n~a~~ 319 (721)
T KOG0465|consen 255 AEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQ---------------PLLDAVVDYLPSPSEVENYALN 319 (721)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcc---------------hHHHHHHHhCCChhhhcccccc
Confidence 1122222222233345678888999999993 488887 55554420
Q ss_pred -------------CCC-CCceeeEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----Cccccee
Q 005973 490 -------------EFS-KPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVA 551 (666)
Q Consensus 490 -------------~~~-~p~~~~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A 551 (666)
..+ .||....+++...+.|++ .+-||.+|+|++||.|+....+++++|..+.+. .++++++
T Consensus 320 ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqL-TyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v 398 (721)
T KOG0465|consen 320 KETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQL-TYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEV 398 (721)
T ss_pred cCCCCccceEeccCCCCCceeeeEEEeeecCccce-EEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhh
Confidence 012 288888888887778999 789999999999999999999999999877653 4789999
Q ss_pred ccCCceeEEeeccCcCccccccEEecC-CCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccC
Q 005973 552 RAGDNIAVSLQGIDVSRVMSGGVLCHP-DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTK 630 (666)
Q Consensus 552 ~aGd~V~l~L~gid~~~i~~G~VL~~~-~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~ 630 (666)
.|||+++|. |+ +...|+++.+. .........|...+++.-..+|-.....-.|--+..+..-....+....|.+
T Consensus 399 ~AG~I~alf--Gi---dcasGDTftd~~~~~~~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E 473 (721)
T KOG0465|consen 399 LAGDICALF--GI---DCASGDTFTDKQNLALSMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPE 473 (721)
T ss_pred hccceeeee--cc---ccccCceeccCccccceeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccc
Confidence 999999887 87 46679999997 4444445555555555444455555554445555566677777888899999
Q ss_pred cCcccccCCccc
Q 005973 631 TGKVTKKSPRCL 642 (666)
Q Consensus 631 tg~~~k~~p~~L 642 (666)
+++++..++..|
T Consensus 474 ~kqTvIsGMGEL 485 (721)
T KOG0465|consen 474 MKQTVISGMGEL 485 (721)
T ss_pred cccchhhccchh
Confidence 999998888776
No 62
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.6e-27 Score=246.71 Aligned_cols=276 Identities=26% Similarity=0.362 Sum_probs=207.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+....+||-|++||||||...|+..-|.|....-- .++++-++ ...|+...|++|||.+..+...|++.++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~V--------k~rk~~~~-a~SDWM~iEkqRGISVtsSVMqF~Y~~~ 81 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRKSGKH-AKSDWMEIEKQRGISVTSSVMQFDYADC 81 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhccee--------eeccCCcc-cccHHHHHHHhcCceEEeeEEEeccCCe
Confidence 44669999999999999999999777776544311 12222222 3468889999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc-h
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-D 423 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~-e 423 (666)
.++|+|||||++|...+.+.+..+|.+|.||||..| +.+||+..+..++..++| ||.++||||+..-++ +
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG--------iE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~E 152 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------IEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLE 152 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccC--------ccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHH
Confidence 999999999999999999999999999999999998 578999999999999999 999999999875433 2
Q ss_pred hhhHHHHHHhhhhhhcCcC-------------------------------------------------------------
Q 005973 424 RFDSIKVQLGTFLRSCGFK------------------------------------------------------------- 442 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~------------------------------------------------------------- 442 (666)
-++++.++|.--...+.|+
T Consensus 153 LLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL 232 (528)
T COG4108 153 LLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELEL 232 (528)
T ss_pred HHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHH
Confidence 2334433332211111110
Q ss_pred ---------------CCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCC----------CC---C
Q 005973 443 ---------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREF----------SK---P 494 (666)
Q Consensus 443 ---------------~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~----------~~---p 494 (666)
....|++.-||+++.|+. .||+++..+.|++... +. .
T Consensus 233 ~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~---------------~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsG 297 (528)
T COG4108 233 VQGAGNEFDLEAFLAGELTPVFFGSALGNFGVD---------------HFLDALVDWAPSPRARQADTREVEPTEDKFSG 297 (528)
T ss_pred HHhhccccCHHHHhcCCccceEehhhhhccCHH---------------HHHHHHHhhCCCCCcccCCcCcccCCCCccce
Confidence 122355666666666663 4889886664443211 11 3
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceeccCCceeEEeeccCcCcc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRV 569 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i 569 (666)
|.|.|+--...+ +.++ +.-||.||.+.+|+++.....|+.+++..-+. .++.++.|.|||+|+|.-.| .+
T Consensus 298 FVFKIQANMDp~HRDRI-AFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~ 372 (528)
T COG4108 298 FVFKIQANMDPKHRDRI-AFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TI 372 (528)
T ss_pred EEEEEEcCCCcccccce-eEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC----ce
Confidence 455555445555 7888 89999999999999999999999988877664 36889999999999998444 48
Q ss_pred ccccEEecC
Q 005973 570 MSGGVLCHP 578 (666)
Q Consensus 570 ~~G~VL~~~ 578 (666)
+.||+++..
T Consensus 373 ~IGDT~t~G 381 (528)
T COG4108 373 QIGDTFTEG 381 (528)
T ss_pred eecceeecC
Confidence 889999875
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.94 E-value=8.1e-27 Score=276.92 Aligned_cols=369 Identities=20% Similarity=0.260 Sum_probs=232.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~- 341 (666)
....+||+|+||+|||||||+++|++..+.+.... . ...+.+|...+|+++|+|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~------------~---g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------------A---GDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc------------C---CceeeccCcHHHHHhCCceecceeEEEee
Confidence 44678999999999999999999999888775431 1 1246789999999999999977666654
Q ss_pred ---------------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC
Q 005973 342 ---------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (666)
Q Consensus 342 ---------------~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip 406 (666)
.++.++|+|||||.+|...+..+++.+|++|+||||..| +..||+.++..+...++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G--------v~~~t~~~~~~~~~~~~p 152 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--------VCVQTETVLRQALGERIR 152 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC--------CcccHHHHHHHHHHCCCC
Confidence 267899999999999999999999999999999999988 467999999999999999
Q ss_pred cEEEEEeccccccc----cc----hhhhHHHHHHhhhhhhcC--------cCCCCCcEEEeecccCCCcccC--------
Q 005973 407 QLIVAVNKMDAVQY----SK----DRFDSIKVQLGTFLRSCG--------FKDASLTWIPLSALENQNLVTA-------- 462 (666)
Q Consensus 407 ~iIVViNK~Dlv~~----~~----e~~~~i~~el~~~l~~~~--------~~~~~i~iIpvSA~tG~nI~e~-------- 462 (666)
+|+++||||+.-. +. ..++.+.++++.++..++ +.+..-.+++.|+..|+.+.-.
T Consensus 153 -~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~ 231 (843)
T PLN00116 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
T ss_pred -EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHH
Confidence 8999999998721 11 345666666663332221 1111111233333222100000
Q ss_pred -----------------------------C-------------------------------------CC-----------
Q 005973 463 -----------------------------P-------------------------------------DD----------- 465 (666)
Q Consensus 463 -----------------------------~-------------------------------------~~----------- 465 (666)
. ..
T Consensus 232 ~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~ 311 (843)
T PLN00116 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKE 311 (843)
T ss_pred HhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHh
Confidence 0 00
Q ss_pred --------ccccccCCc-ccHHHHhh-hcCCCCC-------------------------CCCCCceeeEEeEeecC-CCe
Q 005973 466 --------GRLLSWYKG-PCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQ 509 (666)
Q Consensus 466 --------~~~~~Wy~g-~~LL~~L~-~l~~~~~-------------------------~~~~p~~~~I~~v~~~~-~G~ 509 (666)
..+.+|+-| ..||++|. .+|.|.. +.+.|+...|++++..+ .|.
T Consensus 312 ~~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~ 391 (843)
T PLN00116 312 LMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGR 391 (843)
T ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCe
Confidence 012346655 56778774 3454420 11357888899988766 677
Q ss_pred EEEEEEEEeeeEeeCcEEEEcCCC----ce-----EEEeeeee----cCcccceeccCCceeEEeeccCcCccccccEEe
Q 005973 510 VSACGKLEAGALRSGLKVLVLPSG----EV-----GTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (666)
Q Consensus 510 v~v~G~V~sG~Lk~Gd~v~v~P~~----~~-----~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~ 576 (666)
..+++||.+|+|+.||.|++...+ .. .+|..|.. ...++++|.||++++|. |++. .+..|++|+
T Consensus 392 ~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl~~-~~~~gdTL~ 468 (843)
T PLN00116 392 FFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GLDQ-FITKNATLT 468 (843)
T ss_pred EEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--eecc-cccCCceec
Confidence 338999999999999999754321 11 24444443 24689999999999887 6532 244599998
Q ss_pred cCC--CCcce-eeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccC--------CC
Q 005973 577 HPD--FPVAI-ATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT--------AK 645 (666)
Q Consensus 577 ~~~--~p~~~-~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~--------~g 645 (666)
+.. .+... ...|...+++.-...|...+....|.-+..+..-....+.. .+..||+.+..+.+.|. ..
T Consensus 469 ~~~~~~~~~l~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v-~~~etge~il~g~GElHLEi~~~rL~~ 547 (843)
T PLN00116 469 NEKEVDAHPIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC-TIEESGEHIIAGAGELHLEICLKDLQD 547 (843)
T ss_pred CCcccCCccccccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEE-EEcCCCCEEEEEccHHHHHHHHHHHHH
Confidence 765 22111 11111111221122333333333333333333333334443 23577777766655541 12
Q ss_pred CeE-EEEEEeCceEE
Q 005973 646 QSA-IVEVNQSQNTS 659 (666)
Q Consensus 646 ~~a-~v~l~l~~pI~ 659 (666)
..| .|++++..|..
T Consensus 548 ~f~~~vev~~s~p~V 562 (843)
T PLN00116 548 DFMGGAEIKVSDPVV 562 (843)
T ss_pred HhhCCCcEEEcCCeE
Confidence 333 46666665543
No 64
>PTZ00416 elongation factor 2; Provisional
Probab=99.93 E-value=5.5e-26 Score=269.42 Aligned_cols=368 Identities=21% Similarity=0.257 Sum_probs=232.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
.+.+||+|+||+|||||||+++|++..+.+.... . |. ++.+|...+|+++|+|++.+...+.+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~--g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~ 81 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------A--GD---ARFTDTRADEQERGITIKSTGISLYYEH 81 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------C--Cc---eeecccchhhHhhcceeeccceEEEeec
Confidence 4567999999999999999999999888775431 1 11 356899999999999999876666554
Q ss_pred ---------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 343 ---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 343 ---------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
++.++|+|||||.+|...+..+++.+|++|+|||+..| +..|+..++..+...++| +|+++|
T Consensus 82 ~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g--------~~~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 82 DLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG--------VCVQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred ccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC--------cCccHHHHHHHHHHcCCC-EEEEEE
Confidence 67899999999999999999999999999999999988 467999999999999998 899999
Q ss_pred ccccc----ccc----chhhhHHHHHHhhhhhhc--------CcCCCCCcEEEeecccCCCcc-----------------
Q 005973 414 KMDAV----QYS----KDRFDSIKVQLGTFLRSC--------GFKDASLTWIPLSALENQNLV----------------- 460 (666)
Q Consensus 414 K~Dlv----~~~----~e~~~~i~~el~~~l~~~--------~~~~~~i~iIpvSA~tG~nI~----------------- 460 (666)
|||+. +.+ ...+..+.+++...+..+ .+.+....+...|+..|++..
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~ 232 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEES 232 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHH
Confidence 99987 211 134556666666655422 122222223333443221100
Q ss_pred --------------------cC--CCCc---------------------------ccc----------------------
Q 005973 461 --------------------TA--PDDG---------------------------RLL---------------------- 469 (666)
Q Consensus 461 --------------------e~--~~~~---------------------------~~~---------------------- 469 (666)
.. .... .++
T Consensus 233 ~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~ 312 (836)
T PTZ00416 233 KMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKP 312 (836)
T ss_pred HHHHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHH
Confidence 00 0000 000
Q ss_pred -------ccCC-cccHHHHhh-hcCCCCC-------------------------CCCCCceeeEEeEeecC-CCeEEEEE
Q 005973 470 -------SWYK-GPCLLDAID-SLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACG 514 (666)
Q Consensus 470 -------~Wy~-g~~LL~~L~-~l~~~~~-------------------------~~~~p~~~~I~~v~~~~-~G~v~v~G 514 (666)
.|+- -..||++|. .+|.|.. +.+.|+...|+++...+ .|.+.+++
T Consensus 313 l~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~ 392 (836)
T PTZ00416 313 LLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFG 392 (836)
T ss_pred HHHHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEE
Confidence 0110 034666663 3444420 11347888888888777 78844899
Q ss_pred EEEeeeEeeCcEEEEcCCCc----e-----EEEeeeee----cCcccceeccCCceeEEeeccCcCccccccEEecCCCC
Q 005973 515 KLEAGALRSGLKVLVLPSGE----V-----GTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (666)
Q Consensus 515 ~V~sG~Lk~Gd~v~v~P~~~----~-----~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p 581 (666)
||.+|+|+.||.|++...+. . .+|..|.. ...++++|.||++|+|. |++..-.+.| +|+++..+
T Consensus 393 RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~~~ 469 (836)
T PTZ00416 393 RVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSETA 469 (836)
T ss_pred EEEeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCCCc
Confidence 99999999999997543221 1 12445543 24789999999999987 6643336678 88876532
Q ss_pred cce-eeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccC--------CCCeEEEEE
Q 005973 582 VAI-ATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT--------AKQSAIVEV 652 (666)
Q Consensus 582 ~~~-~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~--------~g~~a~v~l 652 (666)
+.. ...|...+++.-...|...+....|.-+..+..-....+... +..||+.+...++.|. ....+-|++
T Consensus 470 ~~l~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~-~~etgE~il~g~GElHLei~l~~L~~~f~~vev 548 (836)
T PTZ00416 470 HNIRDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCT-TEESGEHIVAGCGELHVEICLKDLEDDYANIDI 548 (836)
T ss_pred ccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEE-EcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcce
Confidence 221 111211111111123333333333333333333334444332 3578888776666541 123345777
Q ss_pred EeCceEE
Q 005973 653 NQSQNTS 659 (666)
Q Consensus 653 ~l~~pI~ 659 (666)
++..|..
T Consensus 549 ~~s~P~V 555 (836)
T PTZ00416 549 IVSDPVV 555 (836)
T ss_pred EecCCEE
Confidence 7777643
No 65
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.2e-26 Score=230.17 Aligned_cols=304 Identities=24% Similarity=0.338 Sum_probs=236.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
+..+||+.+||+.+||||++.++.+- .+-.++.|-+|.+|+..++.....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv----------------------------~TvrFK~ELERNITIKLGYANAKIYk 87 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGV----------------------------HTVRFKNELERNITIKLGYANAKIYK 87 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccc----------------------------eEEEehhhhhcceeEEeccccceEEe
Confidence 35799999999999999999998732 122345556677777766653211
Q ss_pred -C----------------------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCcccccc
Q 005973 342 -K----------------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM 386 (666)
Q Consensus 342 -~----------------------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~ 386 (666)
. -+++.|+|+|||.-++.+|+.++...|+++|+|.+.+..
T Consensus 88 c~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC----- 162 (466)
T KOG0466|consen 88 CDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC----- 162 (466)
T ss_pred cCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-----
Confidence 0 046789999999999999999999999999999998764
Q ss_pred ccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCc
Q 005973 387 NTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (666)
Q Consensus 387 ~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~ 466 (666)
+++||.||+....-+.++++|++-||+|++. +++..+--+++.+|++.... ...|++|+||--+.||+.
T Consensus 163 --PQPQTsEHLaaveiM~LkhiiilQNKiDli~--e~~A~eq~e~I~kFi~~t~a--e~aPiiPisAQlkyNId~----- 231 (466)
T KOG0466|consen 163 --PQPQTSEHLAAVEIMKLKHIIILQNKIDLIK--ESQALEQHEQIQKFIQGTVA--EGAPIIPISAQLKYNIDV----- 231 (466)
T ss_pred --CCCchhhHHHHHHHhhhceEEEEechhhhhh--HHHHHHHHHHHHHHHhcccc--CCCceeeehhhhccChHH-----
Confidence 6789999999999999999999999999995 34444455677777766554 456899999999999954
Q ss_pred cccccCCcccHHHHh-hhcCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc--
Q 005973 467 RLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE-- 534 (666)
Q Consensus 467 ~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~-- 534 (666)
+.++| ..+|.|.|++..|.+|.|-..|.+. .|.| +.|.+..|.|++||.+.+.|.=.
T Consensus 232 ----------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgv-aggsil~Gvlkvg~~IEiRPGiv~k 300 (466)
T KOG0466|consen 232 ----------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGV-AGGSILKGVLKVGQEIEIRPGIVTK 300 (466)
T ss_pred ----------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCcc-ccchhhhhhhhcCcEEEecCceeee
Confidence 89998 7789999999999999887777543 4677 89999999999999999999521
Q ss_pred ----e-------EEEeeeeecCcccceeccCCceeEEeeccCc----CccccccEEecCCCCcceeeEEEEEEEEecC--
Q 005973 535 ----V-------GTVHSIERDSQSCSVARAGDNIAVSLQGIDV----SRVMSGGVLCHPDFPVAIATHLELKVLVLDF-- 597 (666)
Q Consensus 535 ----~-------~~VksI~~~~~~v~~A~aGd~V~l~L~gid~----~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~-- 597 (666)
. .+|.++...+..++.|.+|-.+++.-+ +|+ .+-..|.||...+..|....+++...++|..
T Consensus 301 d~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~-~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrll 379 (466)
T KOG0466|consen 301 DENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTK-MDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLL 379 (466)
T ss_pred cCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccc-cCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHh
Confidence 1 345566667788999999999988643 332 3445788999888888888888877777651
Q ss_pred ------------CCCccCCCEEEEEEeeceEEEEEEEE
Q 005973 598 ------------APPILIGSQLECHIHHAKEAARIVKI 623 (666)
Q Consensus 598 ------------~~pi~~G~~~~l~i~~~~~~a~I~~i 623 (666)
...+..|.-+.+.+|+....++|..+
T Consensus 380 gvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~v 417 (466)
T KOG0466|consen 380 GVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAV 417 (466)
T ss_pred ccccccccccchhhhcccCcEEEEEecccccCceEEEE
Confidence 23456677777888888777777655
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.91 E-value=8.1e-24 Score=214.14 Aligned_cols=190 Identities=28% Similarity=0.380 Sum_probs=146.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~---- 342 (666)
+||+|+||+++|||||+++|++..+.+..+. .+. ++++|....|++||+|+......+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CCc---eeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 4799999999999999999998887665442 111 357899999999999998775544433
Q ss_pred ------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 343 ------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
++.++|||||||.+|...+..+++.+|++|+|||+..+ ...|+++++..+...++| +|+|+||||
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 78899999999999999999999999999999999987 357899999998888998 999999999
Q ss_pred cc--------cccchhhhHHHHHHhhhhhhcCc-------------CCCCCcEEEeecccCCCcccCCCCccccccCCcc
Q 005973 417 AV--------QYSKDRFDSIKVQLGTFLRSCGF-------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGP 475 (666)
Q Consensus 417 lv--------~~~~e~~~~i~~el~~~l~~~~~-------------~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~ 475 (666)
+. .+...++..+.+++..++..+.- .+..-.++..||+.|+...- ..+-+-.
T Consensus 137 ~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~-------~~f~~~~ 209 (222)
T cd01885 137 RLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI-------IKFARIY 209 (222)
T ss_pred cchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEecc-------ccccchH
Confidence 86 12245677788888887776521 11111278899999998832 2232334
Q ss_pred cHHHHh-hhcCCC
Q 005973 476 CLLDAI-DSLRPP 487 (666)
Q Consensus 476 ~LL~~L-~~l~~~ 487 (666)
.||+.| +++|+|
T Consensus 210 ~~~~~~~~~~~~p 222 (222)
T cd01885 210 AVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHhhCCCC
Confidence 788886 556654
No 67
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.90 E-value=2.3e-22 Score=238.62 Aligned_cols=224 Identities=21% Similarity=0.340 Sum_probs=168.2
Q ss_pred ccCeEEEEEEEEEecCC------------------eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCcccccccc
Q 005973 327 ERGITMTVAVAYFDSKN------------------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388 (666)
Q Consensus 327 ~~GiTid~~~~~~~~~~------------------~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~ 388 (666)
..|||++++...+.... ..++|||||||+.|...+..++..+|++|+|||++.+
T Consensus 491 aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G-------- 562 (1049)
T PRK14845 491 AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG-------- 562 (1049)
T ss_pred CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------
Confidence 36899999888776542 1289999999999998888889999999999999987
Q ss_pred chhHHHHHHHHHHHcCCCcEEEEEeccccc-cccc---------------hhhhHHHHHHhh---hhhhcCcCC------
Q 005973 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAV-QYSK---------------DRFDSIKVQLGT---FLRSCGFKD------ 443 (666)
Q Consensus 389 ~~~qt~e~l~ll~~lgip~iIVViNK~Dlv-~~~~---------------e~~~~i~~el~~---~l~~~~~~~------ 443 (666)
++.|+.+++.++...++| +|+|+||+|+. +|.. ..++++..++.. .|...|+..
T Consensus 563 i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~ 641 (1049)
T PRK14845 563 FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRV 641 (1049)
T ss_pred CCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhh
Confidence 467999999999999998 99999999996 4431 111222222112 234455432
Q ss_pred ----CCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCC------CCCCCCCCceeeEEeEeecC-CCeEEE
Q 005973 444 ----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP------PPREFSKPLLMPICDVLKSQ-HGQVSA 512 (666)
Q Consensus 444 ----~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~------~~~~~~~p~~~~I~~v~~~~-~G~v~v 512 (666)
..+++||+||++|+|+.+ |+++|..+.. .....+.|+++.|.+++..+ .|++ +
T Consensus 642 ~d~~~~v~iVpVSA~tGeGId~---------------Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~v-v 705 (1049)
T PRK14845 642 QDFTRTVAIVPVSAKTGEGIPE---------------LLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT-I 705 (1049)
T ss_pred hhcCCCceEEEEEcCCCCCHHH---------------HHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeE-E
Confidence 367999999999999965 6666533321 22345789999999999998 9998 8
Q ss_pred EEEEEeeeEeeCcEEEEcCCCc--eEEEeeeeec------------CcccceeccCCceeEEeeccCcCccccccEEec
Q 005973 513 CGKLEAGALRSGLKVLVLPSGE--VGTVHSIERD------------SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (666)
Q Consensus 513 ~G~V~sG~Lk~Gd~v~v~P~~~--~~~VksI~~~------------~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~ 577 (666)
+|.|.+|+|++||.|+++|.+. ..+||++... ...+.+|.|+..|.+...|++ .+..|+-+.-
T Consensus 706 t~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~--~~~aG~~~~v 782 (1049)
T PRK14845 706 DAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLE--EVLAGSPIRI 782 (1049)
T ss_pred EEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcc--ccCCCCeEEE
Confidence 9999999999999999999765 7899999742 246778888887777644553 2355665543
No 68
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.1e-22 Score=203.47 Aligned_cols=167 Identities=31% Similarity=0.413 Sum_probs=127.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~---- 342 (666)
++|+++||+|+|||||+.+|... ..|....|..+|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~----------------------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV----------------------------WTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----------------------------CCCCCCeeEEcCCceeecccccccccccC
Confidence 47999999999999999999721 2455667777788877766655432
Q ss_pred -----------------------C------eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHH
Q 005973 343 -----------------------N------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT 393 (666)
Q Consensus 343 -----------------------~------~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt 393 (666)
+ ++++|||||||.+|...++.++..+|++|+|||+..+. ...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t 125 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQT 125 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcch
Confidence 2 78999999999999999999999999999999998742 23577
Q ss_pred HHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCC
Q 005973 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK 473 (666)
Q Consensus 394 ~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~ 473 (666)
.+++..+...+++++|+|+||+|+.. ...+....+++..+++.... ..++++++||++|+|+.+
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~------------ 189 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDV------------ 189 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHH------------
Confidence 88888888888877999999999974 23344444555555543322 246789999999999965
Q ss_pred cccHHHHhhh-cCCC
Q 005973 474 GPCLLDAIDS-LRPP 487 (666)
Q Consensus 474 g~~LL~~L~~-l~~~ 487 (666)
|++.|.. ++.|
T Consensus 190 ---L~~~l~~~l~~~ 201 (203)
T cd01888 190 ---LLEYIVKKIPTP 201 (203)
T ss_pred ---HHHHHHHhCCCC
Confidence 8888744 4444
No 69
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=3.2e-22 Score=197.96 Aligned_cols=171 Identities=29% Similarity=0.473 Sum_probs=128.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~---- 342 (666)
+||+++|++|+|||||+++|+...+ .+.++....++++|+|++.....+...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4799999999999999999984311 123566677888999998877766554
Q ss_pred ----------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 343 ----------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
++.++|||||||..|...+..++..+|++|+|+|+..+. ..++.+++.++...++| +|+|+
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~ 127 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI--------QTQTAECLVIGEILCKK-LIVVL 127 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEE
Confidence 778999999999999999988889999999999998762 34666667677777887 99999
Q ss_pred eccccccccc--hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCC
Q 005973 413 NKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP 487 (666)
Q Consensus 413 NK~Dlv~~~~--e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~ 487 (666)
||+|+..... ..++.+.+.+...+...++ ..++++++||++|.|+.+ |++.|.. +++|
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~---------------L~~~l~~~~~~~ 188 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAE---------------LGKDLNNLIVLP 188 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHH---------------HHHHHHhccccc
Confidence 9999974221 1233334444433433333 347899999999999965 8898854 4444
No 70
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=5e-22 Score=196.86 Aligned_cols=185 Identities=26% Similarity=0.321 Sum_probs=138.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
..+|+++|++++|||||+++|++..+.+..... . -.+.++....++.+|+|+......+...+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--------------~-~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE--------------V-EERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc--------------c-cccccccchhHHhcccccccceeEEEECCEE
Confidence 468999999999999999999975554433210 0 0144666777888999998888888888999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
+.||||||+.+|...+..+++.+|++|+|+|++.+. ..++.+++..+...++| +|+|+||+|+.. .++
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~--------~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~---~~~ 134 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP--------MPQTRFVLKKALELGLK-PIVVINKIDRPD---ARP 134 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEECCCCCC---CCH
Confidence 999999999999999999999999999999998763 34666666667778888 899999999974 233
Q ss_pred hHHHHHHhhhhhhcCcCC--CCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhh
Q 005973 426 DSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS 483 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~--~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~ 483 (666)
....+++..+++.++... ..++++++||++|.|+.+. ..|-.+ ..|++.|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~------~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL------EDPSEDLEPLFDTIIE 189 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc------ccchhhHHHHHHHHHh
Confidence 444555666654444322 2468999999999999763 333222 347777754
No 71
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.3e-23 Score=220.15 Aligned_cols=307 Identities=24% Similarity=0.341 Sum_probs=216.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE----
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---- 339 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~---- 339 (666)
....|+.+|.|+++|||||...|....+.|.... .|. +.++|..+.|.+||||+......+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aGe-----~Rf~DtRkDEQeR~iTIKStAISl~~e~ 81 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AGE-----TRFTDTRKDEQERGITIKSTAISLFFEM 81 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecc----------cCC-----ccccccccchhhcceEeeeeeeeehhhh
Confidence 4567899999999999999999998877775332 122 346899999999999998665543
Q ss_pred ------------ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCc
Q 005973 340 ------------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (666)
Q Consensus 340 ------------~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~ 407 (666)
+.+++.++|||.|||.+|....-.+++..|++++|||+..|+ .-||...+..+....+.
T Consensus 82 ~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~Gv--------CVQTETVLrQA~~ERIk- 152 (842)
T KOG0469|consen 82 SDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV--------CVQTETVLRQAIAERIK- 152 (842)
T ss_pred hHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCce--------EechHHHHHHHHHhhcc-
Confidence 224678999999999999999999999999999999999984 46999999998888888
Q ss_pred EEEEEeccccc----cccchh----hhHHHHHHhhhhhhcCcCC-CCC-------cEEEeecccCCCcccCC--------
Q 005973 408 LIVAVNKMDAV----QYSKDR----FDSIKVQLGTFLRSCGFKD-ASL-------TWIPLSALENQNLVTAP-------- 463 (666)
Q Consensus 408 iIVViNK~Dlv----~~~~e~----~~~i~~el~~~l~~~~~~~-~~i-------~iIpvSA~tG~nI~e~~-------- 463 (666)
-++++||||+. +.+++. |+.+.+.+..++..++..+ ..+ .+-+.|.+.|++..-..
T Consensus 153 Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~K 232 (842)
T KOG0469|consen 153 PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKK 232 (842)
T ss_pred ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHH
Confidence 48899999964 222222 2223333333333333211 111 22345666666542211
Q ss_pred -----------------CCcccc---------------------------------------------------------
Q 005973 464 -----------------DDGRLL--------------------------------------------------------- 469 (666)
Q Consensus 464 -----------------~~~~~~--------------------------------------------------------- 469 (666)
.+.+..
T Consensus 233 F~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~k 312 (842)
T KOG0469|consen 233 FGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEK 312 (842)
T ss_pred hCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccc
Confidence 000001
Q ss_pred -------------ccC-CcccHHHHh-hhcCCCC-------------------------CCCCCCceeeEEeEeecC-CC
Q 005973 470 -------------SWY-KGPCLLDAI-DSLRPPP-------------------------REFSKPLLMPICDVLKSQ-HG 508 (666)
Q Consensus 470 -------------~Wy-~g~~LL~~L-~~l~~~~-------------------------~~~~~p~~~~I~~v~~~~-~G 508 (666)
.|. .+.+||+.| .++|.|. .+.+.|+.|.|.+..... .|
T Consensus 313 d~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkg 392 (842)
T KOG0469|consen 313 DLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKG 392 (842)
T ss_pred cccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCc
Confidence 122 145677766 4555441 245789999999999877 99
Q ss_pred eEEEEEEEEeeeEeeCcEEEEcCCC-----c-eEEEeeeee-------cCcccceeccCCceeEEeeccCcCccccccEE
Q 005973 509 QVSACGKLEAGALRSGLKVLVLPSG-----E-VGTVHSIER-------DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 509 ~v~v~G~V~sG~Lk~Gd~v~v~P~~-----~-~~~VksI~~-------~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
+.+++|||++|++..|+++++...+ + ..-+|+|++ .-++++...+|.+++|. |+|..-++.|.+-
T Consensus 393 RFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtGTiT 470 (842)
T KOG0469|consen 393 RFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTGTIT 470 (842)
T ss_pred eEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccCcee
Confidence 9999999999999999999986332 1 234566654 45789999999999998 9988877788777
Q ss_pred ecCCCCcceeeEEEEEEEEec
Q 005973 576 CHPDFPVAIATHLELKVLVLD 596 (666)
Q Consensus 576 ~~~~~p~~~~~~F~a~i~vl~ 596 (666)
.....+-.....|...+++--
T Consensus 471 t~e~AHNmrvMKFSVSPVV~V 491 (842)
T KOG0469|consen 471 TSEAAHNMRVMKFSVSPVVRV 491 (842)
T ss_pred ehhhhccceEEEeeccceEEE
Confidence 666555555678887766654
No 72
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=2.6e-22 Score=203.70 Aligned_cols=177 Identities=27% Similarity=0.394 Sum_probs=132.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE-----------
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV----------- 336 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~----------- 336 (666)
+|+++|+.++|||||+++|+.. ... .+++. ....++.+.+|.++|+|..+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~~-------------~~~~~--~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~ 63 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--ELD-------------NGRGK--ARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV 63 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CcC-------------CCCCe--EEeehhhhhhhhhcCchhhhhhhhcccCCCCce
Confidence 4899999999999999999842 111 11111 1123455555555666553222
Q ss_pred -------------EEEecCCeEEEEEeCCCccchHHHHHHhcc--cCCEEEEEEeCCCCccccccccchhHHHHHHHHHH
Q 005973 337 -------------AYFDSKNYHVVVLDSPGHKDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR 401 (666)
Q Consensus 337 -------------~~~~~~~~~i~liDTPGh~~f~~~~~~~~~--~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~ 401 (666)
..++..++.++|+|||||++|.+.++.++. .+|++++|||+..+ +..++.+++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~ 135 (224)
T cd04165 64 VNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLAL 135 (224)
T ss_pred ecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHH
Confidence 233445788999999999999999999886 79999999999987 4679999999999
Q ss_pred HcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcC---------------------CCCCcEEEeecccCCCcc
Q 005973 402 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALENQNLV 460 (666)
Q Consensus 402 ~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~---------------------~~~i~iIpvSA~tG~nI~ 460 (666)
.+++| +|+|+||+|+.+ +.++.....++..+++..++. ...+|++++||.+|+|+.
T Consensus 136 ~~~ip-~ivvvNK~D~~~--~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~ 212 (224)
T cd04165 136 ALNIP-VFVVVTKIDLAP--ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLD 212 (224)
T ss_pred HcCCC-EEEEEECccccC--HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHH
Confidence 99999 899999999973 556777777787777643332 124589999999999996
Q ss_pred cCCCCccccccCCcccHHHHhhhcCCC
Q 005973 461 TAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (666)
Q Consensus 461 e~~~~~~~~~Wy~g~~LL~~L~~l~~~ 487 (666)
+ |++.|..+|++
T Consensus 213 ~---------------L~~~L~~lp~~ 224 (224)
T cd04165 213 L---------------LHAFLNLLPLR 224 (224)
T ss_pred H---------------HHHHHHhcCCC
Confidence 5 78888877653
No 73
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=2.2e-21 Score=184.81 Aligned_cols=154 Identities=31% Similarity=0.515 Sum_probs=117.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-CeEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHV 346 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-~~~i 346 (666)
+|+|+|++|+|||||+++|++.. .+....+..+++|++..+..+... +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcEE
Confidence 69999999999999999998421 112233445688888877777765 7889
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhh
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~ 426 (666)
.||||||+.+|...+..++..+|++|+|+|++.+ +..++.+.+.++...+.+++|+|+||+|+.. ...+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~--------~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~--~~~~~ 123 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG--------IMPQTREHLEILELLGIKRGLVVLTKADLVD--EDWLE 123 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC--------ccHhHHHHHHHHHHhCCCcEEEEEECccccC--HHHHH
Confidence 9999999999998888889999999999999875 3356777777777778745999999999974 22333
Q ss_pred HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 427 ~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.++..++ ...+++++||++|+|+.+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 124 LVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred HHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHH
Confidence 444555565554332 236899999999999965
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=2.4e-21 Score=188.31 Aligned_cols=162 Identities=30% Similarity=0.467 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE-----ec
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 341 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~-----~~ 341 (666)
.||+++|++++|||||+++|++..+.+....+. .+.++....++.+|+|.......+ +.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMK----------------EQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCc----------------eEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 379999999999999999999876665432211 245667777888899887655444 34
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..+.|||||||.+|...+..++..+|++|+|+|++.+. ..++.+++..+...++| +|+|+||+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~- 134 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV--------EAQTLANFYLALENNLE-IIPVINKIDLPSA- 134 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc--------cHhhHHHHHHHHHcCCC-EEEEEECCCCCcC-
Confidence 5678899999999999999999999999999999998762 34555666666667888 9999999998642
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
......+++... +++. ...++++||++|+|+.+
T Consensus 135 --~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 135 --DPERVKQQIEDV---LGLD--PSEAILVSAKTGLGVED 167 (179)
T ss_pred --CHHHHHHHHHHH---hCCC--cccEEEeeccCCCCHHH
Confidence 222233333332 3331 13579999999999965
No 75
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.86 E-value=2.4e-21 Score=201.99 Aligned_cols=165 Identities=29% Similarity=0.414 Sum_probs=132.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
||+|+||+|+|||||+++|++..|.+.... . ...+ .+.+|...+|+++|+|++.....+++.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g--~-------v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG--E-------VHGG----GATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc--c-------ccCC----ccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 689999999999999999998877764321 0 0011 46789999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhH
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
|||||||.+|...+..++..+|++|+|||+..+ +..++.+++..+...++| +|+++||+|+...+ ++.
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~---~~~ 135 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVP-RIAFVNKMDRTGAD---FFR 135 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHH
Confidence 999999999999999999999999999999987 467899999999999999 78999999998543 334
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccC-CCccc
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVT 461 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG-~nI~e 461 (666)
+.+++...+....+ ..++|+|+..+ .|+.+
T Consensus 136 ~~~~l~~~l~~~~~----~~~~Pisa~~~f~g~vd 166 (270)
T cd01886 136 VVEQIREKLGANPV----PLQLPIGEEDDFRGVVD 166 (270)
T ss_pred HHHHHHHHhCCCce----EEEeccccCCCceEEEE
Confidence 55566665533322 34689998755 34444
No 76
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.86 E-value=5.8e-21 Score=192.34 Aligned_cols=172 Identities=23% Similarity=0.294 Sum_probs=131.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----- 341 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~----- 341 (666)
.+|+|+||+|+|||||+++|++..+.+... ++.....++.++....|+++|+|+......+.+
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 369999999999999999999877765432 233444567789999999999999877666543
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc--
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-- 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~-- 419 (666)
....++|||||||.+|...+..++..+|++|+|+|+..+. ..++.+++..+...++| +|+|+||+|++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~--------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~ 139 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV--------TSNTERLIRHAILEGLP-IVLVINKIDRLILE 139 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECcccCccc
Confidence 3478999999999999999999999999999999998763 34566667777777877 999999999862
Q ss_pred ------ccchhhhHHHHHHhhhhhhcCcCCC------CCcEEEeecccCCCc
Q 005973 420 ------YSKDRFDSIKVQLGTFLRSCGFKDA------SLTWIPLSALENQNL 459 (666)
Q Consensus 420 ------~~~e~~~~i~~el~~~l~~~~~~~~------~i~iIpvSA~tG~nI 459 (666)
....++.++.+++..+++.+++.+. .-.++..||+.|+++
T Consensus 140 ~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~ 191 (213)
T cd04167 140 LKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCF 191 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEE
Confidence 1235677788888888888776431 112455666666665
No 77
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.86 E-value=7.6e-21 Score=194.68 Aligned_cols=130 Identities=38% Similarity=0.556 Sum_probs=112.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
||+++||+|+|||||+++|++..+.+.+..- ...+ .+.+|...+|+++|+|+......+.+.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~---------v~~~----~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGS---------VDKG----TTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccc---------ccCC----cccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 5899999999999999999998877653210 0011 24678888999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
|||||||.+|...+..+++.+|++|+|||+..+ ...++.+++.++...++| +|+++||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 999999999999999999999999999999987 346888899999999999 899999999875
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.84 E-value=4e-20 Score=180.32 Aligned_cols=168 Identities=39% Similarity=0.605 Sum_probs=129.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+|.+|+|||||+++|++.......... ...+.++....+..+|+|++.....+...+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT---------------VEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc---------------eecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 4899999999999999999976544322211 1113455566677788898888888888889999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhH
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
||||||+.+|...+..++..+|++|+|+|+..+. ..+..+.+..+...+.| +++|+||+|+.. ++.+..
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~~ 134 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV--------QPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLEE 134 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC--------cHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHHH
Confidence 9999999999999999999999999999998762 34666777777777777 999999999985 344555
Q ss_pred HHHHHhhhhhhcCc---------CCCCCcEEEeecccCCCccc
Q 005973 428 IKVQLGTFLRSCGF---------KDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 428 i~~el~~~l~~~~~---------~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++.+.++..+. .....+++++||++|.|+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 56666666665543 23457899999999999965
No 79
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=3.5e-20 Score=189.92 Aligned_cols=180 Identities=23% Similarity=0.281 Sum_probs=129.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.--|+|+|++|+|||||+|+|++...+|.+.. +.+|.+.....+..++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcCC
Confidence 4556799999999999999999999888776665 4567777777777789
Q ss_pred eEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 344 ~~i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
.+++|+||||... +.+....++..+|+++||||+.++ +.......++.++....| +|+++||+
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--------~~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--------WGPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--------CCccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 9999999999432 345566778889999999999986 455677778888886778 89999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCC-C------
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP-P------ 488 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~-~------ 488 (666)
|++.... .+..+.+.+.. ...| ..++|+||++|.|+.. |++.|...++. .
T Consensus 125 D~~~~~~-~l~~~~~~~~~---~~~f----~~ivpiSA~~g~n~~~---------------L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 125 DKVKPKT-VLLKLIAFLKK---LLPF----KEIVPISALKGDNVDT---------------LLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred ccCCcHH-HHHHHHHHHHh---hCCc----ceEEEeeccccCCHHH---------------HHHHHHHhCCCCCCcCChh
Confidence 9986322 12222222222 2344 3689999999999954 77777443322 1
Q ss_pred CCCCCCceeeEEeEeec
Q 005973 489 REFSKPLLMPICDVLKS 505 (666)
Q Consensus 489 ~~~~~p~~~~I~~v~~~ 505 (666)
.-.+.|-+|.+.++++.
T Consensus 182 ~itD~~~rf~~aEiiRE 198 (298)
T COG1159 182 QITDRPERFLAAEIIRE 198 (298)
T ss_pred hccCChHHHHHHHHHHH
Confidence 12255666655555543
No 80
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=4.6e-19 Score=169.90 Aligned_cols=151 Identities=28% Similarity=0.367 Sum_probs=109.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC---C
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---N 343 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~---~ 343 (666)
+.|+|+|++|+|||||+++|+.... .....+++|.+.....+... +
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV-------------------------------AAGEAGGITQHIGAFEVPAEVLKI 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc-------------------------------ccccCCCeEEeeccEEEecccCCc
Confidence 3599999999999999999984311 11123466776665666653 7
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||||+..|...+..++..+|++|+|+|++.+. ..++.+.+..+...++| +++|+||+|+.....+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~ 120 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV--------MPQTIEAIKLAKAANVP-FIVALNKIDKPNANPE 120 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEEceecccccHH
Confidence 88999999999999888888889999999999998762 35777778888888998 9999999999753322
Q ss_pred hhhHHHHHHhhhhhhc--CcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSC--GFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~--~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+ ...+..+.... .+ ...++++++||++|+|+.+
T Consensus 121 ~~---~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 121 RV---KNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred HH---HHHHHHhhccccccc-cCcCcEEEeecccCCCHHH
Confidence 32 22222221110 11 1246899999999999965
No 81
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=4.3e-19 Score=184.80 Aligned_cols=150 Identities=31% Similarity=0.442 Sum_probs=119.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
..||+|+||+|+|||||+++|++..+.+.+.... .+++....+ .+|...+|+++|+++......+++.+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~~~~~~t-~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KARKSRKHA-TSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------cccccCCCc-cCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 4689999999999999999999988887643210 111111122 4788899999999999999999999999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
++|||||||.+|...+..+++.+|++|+|+|+..+ +..++..++.++...++| +|+++||+|+...+ +
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~---~ 140 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDREGRD---P 140 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC---H
Confidence 99999999999999999999999999999999876 345777888888888998 89999999987532 2
Q ss_pred hHHHHHHhhhh
Q 005973 426 DSIKVQLGTFL 436 (666)
Q Consensus 426 ~~i~~el~~~l 436 (666)
..+.+++...+
T Consensus 141 ~~~~~~l~~~l 151 (267)
T cd04169 141 LELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHH
Confidence 23344554443
No 82
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.2e-19 Score=198.43 Aligned_cols=244 Identities=25% Similarity=0.331 Sum_probs=170.6
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
....+.+.++|+||+++|||-|+..|.+... .+.-..|||..++..+|.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNV-------------------------------qegeaggitqqIgAt~fp 518 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNV-------------------------------QEGEAGGITQQIGATYFP 518 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcccc-------------------------------ccccccceeeeccccccc
Confidence 4456788899999999999999999974311 112235777777776664
Q ss_pred cC------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH
Q 005973 341 SK------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (666)
Q Consensus 341 ~~------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~ 402 (666)
.. --.+.+||||||+.|.....++...||++|||||..+| +.+||.+.+.+|+.
T Consensus 519 ~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~ 590 (1064)
T KOG1144|consen 519 AENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRM 590 (1064)
T ss_pred hHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHh
Confidence 32 13488999999999999999999999999999999998 67899999999999
Q ss_pred cCCCcEEEEEeccccc-cccch---------------hhhHHHHHHhhh---hhhcCcC----------CCCCcEEEeec
Q 005973 403 FGVDQLIVAVNKMDAV-QYSKD---------------RFDSIKVQLGTF---LRSCGFK----------DASLTWIPLSA 453 (666)
Q Consensus 403 lgip~iIVViNK~Dlv-~~~~e---------------~~~~i~~el~~~---l~~~~~~----------~~~i~iIpvSA 453 (666)
...| |||++||+|+. +|-.. ...++...+..+ +...|++ ...+.++|+||
T Consensus 591 rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA 669 (1064)
T KOG1144|consen 591 RKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA 669 (1064)
T ss_pred cCCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence 9999 99999999976 33210 011111111111 1222222 13467899999
Q ss_pred ccCCCcccCCCCccccccCCcccHHHHhhhcC----CCCCCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEE
Q 005973 454 LENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR----PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVL 528 (666)
Q Consensus 454 ~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~----~~~~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~ 528 (666)
.+|+||.. ||-.|.++. ...-.....++..|.+|-.+. .|+. +-.-+..|.|+.||.|+
T Consensus 670 ~sGeGipd---------------Ll~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtT-IDViLvNG~L~eGD~Iv 733 (1064)
T KOG1144|consen 670 ISGEGIPD---------------LLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTT-IDVILVNGELHEGDQIV 733 (1064)
T ss_pred ccCCCcHH---------------HHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCce-EEEEEEcceeccCCEEE
Confidence 99999954 555543321 112223456677787887777 8887 78899999999999999
Q ss_pred EcCCCc----------------eEEEeeeeecCc-------------ccceeccCCceeEE
Q 005973 529 VLPSGE----------------VGTVHSIERDSQ-------------SCSVARAGDNIAVS 560 (666)
Q Consensus 529 v~P~~~----------------~~~VksI~~~~~-------------~v~~A~aGd~V~l~ 560 (666)
+...+- ..+|++-+.++. .++.|.||-++-+.
T Consensus 734 vcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 734 VCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred EcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 865432 356666555543 45566677665443
No 83
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=1.6e-19 Score=172.17 Aligned_cols=143 Identities=24% Similarity=0.286 Sum_probs=102.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|.+|+|||||+|+|++....+ ...+|+|++.....+...+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v-------------------------------~n~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV-------------------------------GNWPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE-------------------------------EESTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee-------------------------------cCCCCCCeeeeeEEEEecCceE
Confidence 479999999999999999999654222 2237999999999999999999
Q ss_pred EEEeCCCccch------HHHHHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 347 VVLDSPGHKDF------VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 347 ~liDTPGh~~f------~~~~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.|+|+||...+ -.....+ ...+|++|+|+||++- ......+..+..+|+| +|+|+||+|+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l----------~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL----------ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH----------HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH----------HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 99999994221 1111222 2579999999999862 3556677788899999 99999999988
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .+..-.+.+.+.+ + +|++++||++|+|+.+
T Consensus 119 ~~~--g~~id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 119 ERK--GIEIDAEKLSERL---G-----VPVIPVSARTGEGIDE 151 (156)
T ss_dssp HHT--TEEE-HHHHHHHH---T-----S-EEEEBTTTTBTHHH
T ss_pred HHc--CCEECHHHHHHHh---C-----CCEEEEEeCCCcCHHH
Confidence 522 2221234444444 3 5899999999999966
No 84
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.2e-20 Score=195.00 Aligned_cols=274 Identities=25% Similarity=0.361 Sum_probs=192.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+..||+|+.|+++||||...+|++..|.+.... ...+|. .++|....||+||||+..+...|+|++
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g---------~vddgd----tvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG---------DVDDGD----TVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhccc---------ccCCCc----hHHHHHHHHHhcCceeeeeeeeccccc
Confidence 3567899999999999999999999887764322 122222 356788899999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
++++|||||||.+|.-...+-++..|+++.|+|++.| .++||...+.....+++| -++.+||||+...+.+
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasag--------ve~qtltvwrqadk~~ip-~~~finkmdk~~anfe 172 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG--------VEAQTLTVWRQADKFKIP-AHCFINKMDKLAANFE 172 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC--------cccceeeeehhccccCCc-hhhhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999998 468999999999999999 6889999998643211
Q ss_pred -hhhHHHHHHhh--------------------------------------------------------------------
Q 005973 424 -RFDSIKVQLGT-------------------------------------------------------------------- 434 (666)
Q Consensus 424 -~~~~i~~el~~-------------------------------------------------------------------- 434 (666)
..+.+.+.+..
T Consensus 173 ~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~ql 252 (753)
T KOG0464|consen 173 NAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQL 252 (753)
T ss_pred hHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 11222211110
Q ss_pred -----------------------------hhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-c
Q 005973 435 -----------------------------FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-L 484 (666)
Q Consensus 435 -----------------------------~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l 484 (666)
.+..+.+....+++..-||.++.||. .||+++.. +
T Consensus 253 ad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiq---------------plldavtmyl 317 (753)
T KOG0464|consen 253 ADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQ---------------PLLDAVTMYL 317 (753)
T ss_pred hhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCcc---------------chhhhhhhcc
Confidence 00011111122355566777777773 38888754 4
Q ss_pred CCCCC-CC------CCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceec
Q 005973 485 RPPPR-EF------SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVAR 552 (666)
Q Consensus 485 ~~~~~-~~------~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~ 552 (666)
|.|.. +. ...+....+++...+ +|.+ ++-||.+|+|+..-.|........-.+-.+.. .+..++...
T Consensus 318 pspeernyeflqwykddlcalafkvlhdkqrg~l-~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qls 396 (753)
T KOG0464|consen 318 PSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPL-SFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLS 396 (753)
T ss_pred CChhhcchHHHhhhhhhHHHHhhhhhcccccCce-eEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcc
Confidence 44432 11 223333445667777 9999 89999999999988888665544434433332 356788999
Q ss_pred cCCceeEEeeccCcCccccccEEecCC
Q 005973 553 AGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 553 aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
||.+.-.. |+ ...-.|++++...
T Consensus 397 agnialt~--gl--k~tatgdtivask 419 (753)
T KOG0464|consen 397 AGNIALTA--GL--KHTATGDTIVASK 419 (753)
T ss_pred cccEEEEe--cc--eeeccCCeEEecc
Confidence 99964333 54 3344688887653
No 85
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=4e-19 Score=191.32 Aligned_cols=155 Identities=26% Similarity=0.351 Sum_probs=132.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|.||+|||||+|+|+++...|... ..|+|+|.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 357999999999999999999999765555433 47999999999999999
Q ss_pred eEEEEEeCCCccc----------h-HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 344 YHVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh~~----------f-~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
..+.|+||+|..+ | ...++.++..||+++||+||+++ +..|....+.++...|.+ +|+|+
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~~g~~-~vIvv 296 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG--------ISEQDLRIAGLIEEAGRG-IVIVV 296 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC--------chHHHHHHHHHHHHcCCC-eEEEE
Confidence 9999999999432 2 34456678889999999999998 467999999999999999 89999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|++..+...++..++++...+..++| .+++++||++|.|+.+
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~ 341 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDK 341 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHH
Confidence 99999976567788888899988887777 4789999999999966
No 86
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=9.2e-19 Score=188.57 Aligned_cols=152 Identities=27% Similarity=0.325 Sum_probs=122.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
+.|+|+|++|+|||||+|||++..-+|..+. +|+|.|..+...++.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 6799999999999999999998776665554 8999999999999999999
Q ss_pred EEEeCCCccc-----h----HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 347 VVLDSPGHKD-----F----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 347 ~liDTPGh~~-----f----~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
.+|||+|... + ...++.++..||++|||||+..| +.+++.+...+++..+.| +|+|+||+|.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 9999999652 3 33445567889999999999998 467899999999977788 9999999997
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcC
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR 485 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~ 485 (666)
.+. +.....+.++||. ..+++||..|.|+.+ |++++....
T Consensus 125 ~~~---------e~~~~efyslG~g----~~~~ISA~Hg~Gi~d---------------Lld~v~~~l 164 (444)
T COG1160 125 LKA---------EELAYEFYSLGFG----EPVPISAEHGRGIGD---------------LLDAVLELL 164 (444)
T ss_pred chh---------hhhHHHHHhcCCC----CceEeehhhccCHHH---------------HHHHHHhhc
Confidence 631 1112223456774 459999999999965 888875543
No 87
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.9e-18 Score=189.35 Aligned_cols=173 Identities=27% Similarity=0.383 Sum_probs=136.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
....||.++.|++||||||...|+...|.|.++... .. .++|..++|..||||+..+.....-++
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlag------------ki---rfld~redeq~rgitmkss~is~~~~~ 71 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAG------------KI---RFLDTREDEQTRGITMKSSAISLLHKD 71 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhcc------------ce---eeccccchhhhhceeeeccccccccCc
Confidence 357899999999999999999999888888766532 22 468999999999999998888877789
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc----c
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV----Q 419 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv----~ 419 (666)
+.++|||+|||.+|.....++.+.+|.++++||+.+|+ ..||...++.+-.-|.. .|+|+||||+. .
T Consensus 72 ~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv--------~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 72 YLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGV--------CSQTYAVLRQAWIEGLK-PILVINKIDRLITELK 142 (887)
T ss_pred eEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecccc--------chhHHHHHHHHHHccCc-eEEEEehhhhHHHHHh
Confidence 99999999999999999999999999999999999984 67999999988888888 79999999943 1
Q ss_pred c-cchhhh---HHHHHHhhhhh-------------------hcCcCCCCCcEEEeecccCCCcc
Q 005973 420 Y-SKDRFD---SIKVQLGTFLR-------------------SCGFKDASLTWIPLSALENQNLV 460 (666)
Q Consensus 420 ~-~~e~~~---~i~~el~~~l~-------------------~~~~~~~~i~iIpvSA~tG~nI~ 460 (666)
. ..+.+. .+.+++...+. ..-|.+..-.++..||..|+++.
T Consensus 143 lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 143 LSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFG 206 (887)
T ss_pred cChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccccc
Confidence 1 123222 23333333332 22344444567999999998873
No 88
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=3.1e-18 Score=178.57 Aligned_cols=130 Identities=31% Similarity=0.430 Sum_probs=108.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
||+|+||+|+|||||+++|++..+.+.... .-. .-.+.+|....++.+++|+......+.+.++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g------------~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLG------------SVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCC------------eec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 589999999999999999998766553221 000 1124577788889999999988889999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
||||||+.+|...+..++..+|++|+|+|+..+. ..++..++..+...++| +++|+||+|+..
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~--------~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGV--------EVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 9999999999999999999999999999999873 45778888888889998 788999999874
No 89
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=2.4e-18 Score=165.07 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=101.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+|+.|+|||||+++|+....... ..... ....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~-------------------------~~~~~--~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK-------------------------GLPPS--KITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccccc-------------------------CCccc--ccCCccccceEEEEECCEEEE
Confidence 589999999999999999985322100 00001 122344444455666789999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HH---HHcCCCcEEEEEeccccccccch
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LI---RSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll---~~lgip~iIVViNK~Dlv~~~~e 423 (666)
||||||+.+|...+...+..+|++|+|+|+.... .+ ......+. ++ ...++| +|+|+||+|+.. ..
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~~----~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~--~~ 123 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---RF----EESKSALEKVLRNEALEGVP-LLILANKQDLPD--AL 123 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---HH----HHHHHHHHHHHhChhhcCCC-EEEEEEcccccc--CC
Confidence 9999999999888888899999999999997642 01 11122221 12 224677 999999999864 22
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++.+.+.......+. ..++++++||++|+|+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 124 SVEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVRE 159 (167)
T ss_pred CHHHHHHHhccccccccC--CceEEEEeeCCCCcCHHH
Confidence 233343334433322332 346899999999999966
No 90
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=7.6e-18 Score=161.14 Aligned_cols=153 Identities=25% Similarity=0.275 Sum_probs=106.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
+++|+++|++|+|||||+++|++....+. ...+++|.......+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV------------------------------SDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec------------------------------cCCCCCccCceeeEEEECCee
Confidence 57899999999999999999985422111 112455555555556667788
Q ss_pred EEEEeCCCccch----------H-HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 346 VVVLDSPGHKDF----------V-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 346 i~liDTPGh~~f----------~-~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
+.+|||||+.+. . ......+..+|++|+|+|+..+. ..+....+..+...+.| +|+|+||
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK 122 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI--------TEQDLRIAGLILEEGKA-LVIVVNK 122 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc--------chhHHHHHHHHHhcCCC-EEEEEec
Confidence 999999996443 1 22344567899999999998763 23444555566666777 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+........+.+.+.+...+...+ ..+++++||++|+|+.+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFLD----YAPIVFISALTGQGVDK 165 (174)
T ss_pred cccCCccHHHHHHHHHHHHhhccccc----CCceEEEeccCCCCHHH
Confidence 99986433445555555555443222 35789999999999965
No 91
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=4.4e-18 Score=188.93 Aligned_cols=154 Identities=25% Similarity=0.272 Sum_probs=117.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++|++|+|||||+++|++....+ ....+|+|.+.....+...+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~ 220 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVI------------------------------VSDIAGTTRDSIDIPFERNGK 220 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeee------------------------------cCCCCCceECcEeEEEEECCc
Confidence 46899999999999999999999542211 122468888887777777888
Q ss_pred EEEEEeCCCccchH-----------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 345 HVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 345 ~i~liDTPGh~~f~-----------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
.+.||||||+.++. ..++.++..+|++|+|+|+..+. ..+....+..+...+.| +|+|+|
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGI--------TEQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999975432 22345678899999999999873 45777777788888888 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|+|++. +.+.++.+.+++...+...+ .++++++||++|.|+.++
T Consensus 292 K~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l 335 (429)
T TIGR03594 292 KWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKL 335 (429)
T ss_pred CcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHH
Confidence 999983 34555666666666554433 368899999999999763
No 92
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=6.7e-18 Score=181.79 Aligned_cols=177 Identities=24% Similarity=0.316 Sum_probs=116.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|++|+|||||+|+|++....+. ....++|.+.....+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~iv------------------------------s~k~~tTr~~~~~~~~~~~~ 100 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIV------------------------------TPKVQTTRSIITGIITLKDT 100 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeec------------------------------cCCCCCccCcEEEEEEeCCe
Confidence 457899999999999999999995432211 12245566655556667788
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
++.||||||+.+ +.+.....+..||++|+|||+..+ +.......+..++..+.| +|+|+||+|
T Consensus 101 qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--------~~~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 101 QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--------FDDITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred EEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 999999999743 223334457789999999998764 223445566667777888 678999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCC-------CC
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP-------PR 489 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~-------~~ 489 (666)
+.+. ....+ ...+.... ....++++||++|.|+.+ |++.|....++ ..
T Consensus 172 l~~~---~~~~~----~~~l~~~~---~~~~i~~iSAktg~gv~e---------------L~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 172 IESK---YLNDI----KAFLTENH---PDSLLFPISALSGKNIDG---------------LLEYITSKAKISPWLYAEDD 226 (339)
T ss_pred Cccc---cHHHH----HHHHHhcC---CCcEEEEEeccCccCHHH---------------HHHHHHHhCCCCCCCCCCCC
Confidence 8632 22222 23332222 124689999999999965 77776443222 12
Q ss_pred CCCCCceeeEEeEeec
Q 005973 490 EFSKPLLMPICDVLKS 505 (666)
Q Consensus 490 ~~~~p~~~~I~~v~~~ 505 (666)
..+.|.++.+.++++.
T Consensus 227 ~td~~~~~~~~eiiRe 242 (339)
T PRK15494 227 ITDLPMRFIAAEITRE 242 (339)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 2355666666555543
No 93
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=9.9e-18 Score=175.07 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=99.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|++|+|||||+|+|++....+.. ..+++|.+.........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs------------------------------~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS------------------------------PKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC------------------------------CCCCcccCcEEEEEEcCCcEEE
Confidence 5899999999999999999965332211 1245565544444445667899
Q ss_pred EEeCCCccch--------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 348 VLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 348 liDTPGh~~f--------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
||||||+.+. ...+..++..+|++++|+|++... ..+ ...+..+...+.| +|+|+||+|+..
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~--------~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~ 121 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN--------GDG-EFVLTKLQNLKRP-VVLTRNKLDNKF 121 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------chH-HHHHHHHHhcCCC-EEEEEECeeCCC
Confidence 9999996432 233456678899999999998752 112 4455666777888 999999999973
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... +...+..+....++ .+++++||++|.|+.+
T Consensus 122 --~~~---~~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 122 --KDK---LLPLIDKYAILEDF----KDIVPISALTGDNTSF 154 (270)
T ss_pred --HHH---HHHHHHHHHhhcCC----CceEEEecCCCCCHHH
Confidence 222 22233333333333 2689999999999966
No 94
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.2e-17 Score=185.81 Aligned_cols=153 Identities=25% Similarity=0.289 Sum_probs=118.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++....+ ....+|+|.+.....+...+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~ 221 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDGQ 221 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECCe
Confidence 46999999999999999999999542221 123468899888777888889
Q ss_pred EEEEEeCCCccch-----------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 345 HVVVLDSPGHKDF-----------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 345 ~i~liDTPGh~~f-----------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
.+.||||||+.+. ...++.++..+|++|+|+|+..+ ...|....+.++...+.| +|+|+|
T Consensus 222 ~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 222 KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999996431 12345678889999999999987 346777888888888888 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|+|+.+ .+.++++.+++...+.... .++++++||++|.|+.++
T Consensus 293 K~Dl~~--~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 293 KWDLVD--EKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKL 335 (435)
T ss_pred CccCCC--HHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHH
Confidence 999983 3445566666666554333 368999999999999774
No 95
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=8e-17 Score=157.54 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=103.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+|++|+|||||+++|++..... ......|.|.+......+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~--- 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGRTQLINFFEVN--- 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------cccCCCCcceEEEEEEeC---
Confidence 456889999999999999999998532100 011124556665544332
Q ss_pred eEEEEEeCCCcc----------chHHHHHHhc---ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005973 344 YHVVVLDSPGHK----------DFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (666)
Q Consensus 344 ~~i~liDTPGh~----------~f~~~~~~~~---~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (666)
..+.||||||+. +|...+..++ ..+|++|+|+|++.+ +..+..+++.++...++| +++
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-vii 134 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VLI 134 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEE
Confidence 369999999952 2333332333 346899999999876 234566667778888888 999
Q ss_pred EEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCc
Q 005973 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI 459 (666)
|+||+|+.. ...++...+++...++..+ ...+++++||++|+|+
T Consensus 135 v~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 135 VLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGI 178 (179)
T ss_pred EEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCC
Confidence 999999974 3344455666666665543 2357899999999998
No 96
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=5.2e-18 Score=180.28 Aligned_cols=184 Identities=18% Similarity=0.151 Sum_probs=138.9
Q ss_pred cccccccccccccccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhH
Q 005973 223 MKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYE 302 (666)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~ 302 (666)
-.+++.+++..+.++..++++++.....++. .++.+.....+.|+++|++|||||||+|+|++..... .++
T Consensus 152 E~~lE~drR~ir~rI~~i~~eLe~v~~~R~~---~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~-~d~----- 222 (411)
T COG2262 152 ETQLETDRRRIRRRIAKLKRELENVEKAREP---RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYV-ADQ----- 222 (411)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeec-ccc-----
Confidence 4578899999999999999999999999884 4666777789999999999999999999999432221 222
Q ss_pred HHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-CeEEEEEeCCCccc--------hHHHHHHhcccCCEEEE
Q 005973 303 KEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVLDSPGHKD--------FVPNMISGATQSDAAIL 373 (666)
Q Consensus 303 k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-~~~i~liDTPGh~~--------f~~~~~~~~~~aD~aIl 373 (666)
.-.|.++..+.+... +..++|.||.|+.+ .++.++.....||++|+
T Consensus 223 -------------------------LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllh 277 (411)
T COG2262 223 -------------------------LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLH 277 (411)
T ss_pred -------------------------ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEE
Confidence 234888888888876 68999999999765 35566777788999999
Q ss_pred EEeCCCCccccccccchhHHHHHHHHHHHcCCC--cEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEe
Q 005973 374 VIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPL 451 (666)
Q Consensus 374 VVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip--~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpv 451 (666)
|||++++. +..+......++..+|+. ++|+|+||+|++.... . ...+... . . ..|++
T Consensus 278 VVDaSdp~-------~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~----~~~~~~~-----~---~-~~v~i 336 (411)
T COG2262 278 VVDASDPE-------ILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-I----LAELERG-----S---P-NPVFI 336 (411)
T ss_pred EeecCChh-------HHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-h----hhhhhhc-----C---C-CeEEE
Confidence 99999874 345666677778776532 4999999999885322 1 1111111 1 1 46999
Q ss_pred ecccCCCccc
Q 005973 452 SALENQNLVT 461 (666)
Q Consensus 452 SA~tG~nI~e 461 (666)
||++|+|+..
T Consensus 337 SA~~~~gl~~ 346 (411)
T COG2262 337 SAKTGEGLDL 346 (411)
T ss_pred EeccCcCHHH
Confidence 9999999955
No 97
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=1e-16 Score=153.89 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=97.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-- 343 (666)
.++|+|+|+.|+|||||+++|+...- ..+..+.++.+.....+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF-------------------------------SERQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-------------------------------cccCCCccceEEEEEEEEECCEE
Confidence 47999999999999999999984210 011112222333334444444
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+++|.......++.+|++|+|+|++.... +. .....+..+.. .++| +|+|+||+|+...
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~----~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 123 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE----SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQ 123 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH----hHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 578899999999998888888899999999999987531 11 11222222222 3566 8999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+.. .++...+.+..+. ..++++||++|.|+.+
T Consensus 124 ~~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 124 REVL----FEEACTLAEKNGM----LAVLETSAKESQNVEE 156 (165)
T ss_pred cccC----HHHHHHHHHHcCC----cEEEEEECCCCCCHHH
Confidence 2211 1223333333332 4679999999999966
No 98
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.73 E-value=4.4e-17 Score=158.09 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=98.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+++|++|+|||||+++|++... . ... + |+......+...+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~--~----------------------------~~~--~--t~g~~~~~~~~~~ 57 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI--D----------------------------TIS--P--TLGFQIKTLEYEG 57 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC--C----------------------------CcC--C--ccccceEEEEECC
Confidence 3568899999999999999999984310 0 000 1 1111222334457
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||||+..|...+...+..+|++|+|+|+..... +........+.+......++| +|+|+||+|+....
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-- 131 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---LDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-- 131 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC--
Confidence 889999999999888877888899999999999987521 111111111111111224566 99999999997421
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .++...++........++++++||++|.|+.+
T Consensus 132 ~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 132 SE----EEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred CH----HHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 11 22333333222233456899999999999966
No 99
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=4.4e-17 Score=153.80 Aligned_cols=140 Identities=25% Similarity=0.271 Sum_probs=100.4
Q ss_pred EEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEEE
Q 005973 270 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVL 349 (666)
Q Consensus 270 ~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~li 349 (666)
+++|++|+|||||+++|+..... ..+..+++|.+.....+...+..+.||
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------------------------------IVEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE------------------------------eecCCCCceeCceeEEEEECCeEEEEE
Confidence 57999999999999999843111 111234667776666777778899999
Q ss_pred eCCCccchHH--------HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 350 DSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 350 DTPGh~~f~~--------~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
||||+.++.. .....+..+|++|+|+|+..+. .....+++.+++..+.| +|+|+||+|+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~ 121 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL--------TPADEEIAKYLRKSKKP-VILVVNKVDNIKEE 121 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC--------CccHHHHHHHHHhcCCC-EEEEEECcccCChH
Confidence 9999888543 4455678899999999998752 23445666777778888 99999999997532
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. ...+..+++ .+++++||++|.|+.+
T Consensus 122 ~~---------~~~~~~~~~----~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 122 DE---------AAEFYSLGF----GEPIPISAEHGRGIGD 148 (157)
T ss_pred HH---------HHHHHhcCC----CCeEEEecccCCCHHH
Confidence 11 112223333 2579999999999966
No 100
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=7.7e-17 Score=181.14 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=109.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 46899999999999999999999532111 123467888877777777888
Q ss_pred EEEEEeCCCcc---------chHHHH--HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 345 HVVVLDSPGHK---------DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 345 ~i~liDTPGh~---------~f~~~~--~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
.+.||||||.. ++...+ ...+..+|++|+|+|++.+. ..+....+..+...+.| +|+|+|
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~--------s~~~~~~~~~~~~~~~p-iIiV~N 330 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI--------SEQDQRVLSMVIEAGRA-LVLAFN 330 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 99999999952 222222 33567899999999999873 34555666667777888 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|+|+... +....+..++...+.... ..+++++||++|.|+.++
T Consensus 331 K~Dl~~~--~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~l 373 (472)
T PRK03003 331 KWDLVDE--DRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDKL 373 (472)
T ss_pred CcccCCh--hHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHHH
Confidence 9999742 222333344444333322 257899999999999773
No 101
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=1.7e-16 Score=167.41 Aligned_cols=150 Identities=21% Similarity=0.222 Sum_probs=101.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+...|+|+|++|||||||+|+|++....+... .+++|.+.....+...+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~------------------------------~~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC------------------------------CCCcccccEEEEEEcCCc
Confidence 45679999999999999999999653322111 123344433333344567
Q ss_pred EEEEEeCCCccch--------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f--------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
+++|+||||+.+. .......+..+|++++|+|++.+ +.....+.+..+...+.| +|+|+||+|
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--------~~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--------IGPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--------CChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 9999999996442 34445567889999999999874 233455666667666778 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+... ........+.+.. ..+ ..+++++||++|.|+.+
T Consensus 125 l~~~-~~~l~~~~~~l~~---~~~----~~~i~~iSA~~~~gv~~ 161 (292)
T PRK00089 125 LVKD-KEELLPLLEELSE---LMD----FAEIVPISALKGDNVDE 161 (292)
T ss_pred CCCC-HHHHHHHHHHHHh---hCC----CCeEEEecCCCCCCHHH
Confidence 9731 2222222233322 222 24689999999999965
No 102
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=7.4e-17 Score=160.74 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=97.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---CC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KN 343 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~---~~ 343 (666)
++|+|+|.+|+|||||+++|++... .....+.+..+.....+.. ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-------------------------------~~~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-------------------------------SQHYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeEEEEEEEEEECCCCE
Confidence 4799999999999999999984210 1111233333333333333 35
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+++|...+...+..+|++|+|+|.+.... |+.+.....+....+. ..++| +|+|+||+|+.+.
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~ 125 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKR 125 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccc
Confidence 678899999999998888888999999999999987532 1111000011111111 13566 9999999999731
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ..+++..+++..++ .+++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e 158 (201)
T cd04107 126 LAK----DGEQMDQFCKENGF----IGWFETSAKEGINIEE 158 (201)
T ss_pred ccc----CHHHHHHHHHHcCC----ceEEEEeCCCCCCHHH
Confidence 111 12334455544443 4689999999999977
No 103
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=1.8e-16 Score=176.13 Aligned_cols=142 Identities=25% Similarity=0.289 Sum_probs=109.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999999543222 122368888888888888899999
Q ss_pred EEeCCCc--------cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 348 VLDSPGH--------KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 348 liDTPGh--------~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
||||||+ ..+...+..++..+|++|+|+|+..+ +.....+.+.+++..+.| +|+|+||+|+..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 9999996 34556667788899999999999886 345667788888888988 999999999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ..+ +..+++ .+++++||++|.|+.+
T Consensus 122 ~~~~-----~~~----~~~lg~----~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 122 EDAV-----AAE----FYSLGF----GEPIPISAEHGRGIGD 150 (429)
T ss_pred cccc-----HHH----HHhcCC----CCeEEEeCCcCCChHH
Confidence 3211 111 223444 2579999999999965
No 104
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=4.6e-16 Score=148.14 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=99.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
.+|+++|++++|||||+++|++... .....++++.+.....+...+ .
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-------------------------------DNQYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CccCCCceeeeEEEEEEEECCEEE
Confidence 3799999999999999999984311 112234556665555555444 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHHHcC--CCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFG--VDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~lg--ip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|.......+..+|++|+|+|++.+.. | . +....+. +....+ +| +|+|+||+|+....
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~-~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~ 121 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---F---D-NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKR 121 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---H---H-HHHHHHHHHHHhCCCCCE-EEEEEEChhccccC
Confidence 68899999999998888888999999999999987531 1 1 1122222 233333 66 99999999996321
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 122 QVST----EEGEKKAKELN-----AMFIETSAKAGHNVKE 152 (161)
T ss_pred ccCH----HHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 1111 22222332222 5789999999999966
No 105
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.1e-16 Score=173.42 Aligned_cols=134 Identities=25% Similarity=0.341 Sum_probs=106.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-- 339 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~-- 339 (666)
.....++|+++||-.+|||+|+..|..+..-- +.+ ..+.. ..++|.+..|++||.++...-..+
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~----~~~-------~~e~~---lrytD~l~~E~eRg~sIK~~p~Tl~l 189 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPD----FSK-------NTEAD---LRYTDTLFYEQERGCSIKSTPVTLVL 189 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccc----ccc-------ccccc---ccccccchhhHhcCceEeecceEEEE
Confidence 34567899999999999999999998664411 100 00011 245788899999999987544433
Q ss_pred ---ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 340 ---DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 340 ---~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
....+-++|+|||||.+|...+...++.+|+++||||+.+|+ +-++...+..+-....| +++|+||+|
T Consensus 190 ~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGV--------mlntEr~ikhaiq~~~~-i~vviNKiD 260 (971)
T KOG0468|consen 190 SDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGV--------MLNTERIIKHAIQNRLP-IVVVINKVD 260 (971)
T ss_pred ecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCc--------eeeHHHHHHHHHhccCc-EEEEEehhH
Confidence 235577889999999999999999999999999999999984 56888888888888888 999999999
Q ss_pred cc
Q 005973 417 AV 418 (666)
Q Consensus 417 lv 418 (666)
++
T Consensus 261 RL 262 (971)
T KOG0468|consen 261 RL 262 (971)
T ss_pred HH
Confidence 75
No 106
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=2.3e-16 Score=151.66 Aligned_cols=146 Identities=21% Similarity=0.193 Sum_probs=92.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe-EE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HV 346 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~-~i 346 (666)
+|+|+|++|||||||+++|.+....+. ...+.|.+.....+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-------------------------------CCCccccCCcceEEEcCCCCeE
Confidence 599999999999999999984321110 1123444444444555555 89
Q ss_pred EEEeCCCcc-------chHHHHHHhcccCCEEEEEEeCCCC-ccccccccchhHHHHHHHHHHH-----cCCCcEEEEEe
Q 005973 347 VVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVG-SFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVN 413 (666)
Q Consensus 347 ~liDTPGh~-------~f~~~~~~~~~~aD~aIlVVDa~~g-~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViN 413 (666)
.||||||+. .+...++..+..+|++|+|+|++.+ ... .+....++.+.. .+.| +|+|+|
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~p-~ivv~N 122 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPV-------EDYKTIRNELELYNPELLEKP-RIVVLN 122 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHH-------HHHHHHHHHHHHhCccccccc-cEEEEE
Confidence 999999963 2344555666779999999999875 111 112222222322 2456 899999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|+.+. .... ..+..++... ...+++++||++|.|+.+
T Consensus 123 K~Dl~~~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 123 KIDLLDE--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDE 161 (170)
T ss_pred chhcCCc--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHH
Confidence 9998742 2221 2222233221 135689999999999966
No 107
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=2.3e-16 Score=150.23 Aligned_cols=148 Identities=22% Similarity=0.209 Sum_probs=93.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|.+|+|||||+++|+....... ......|.+ ...+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----------------------------~~~~t~g~~----~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----------------------------IIVPTVGFN----VESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----------------------------eecCccccc----eEEEEECCEEEE
Confidence 489999999999999999984211000 000111222 223445678899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHH-----HcCCCcEEEEEecccccccc
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIR-----SFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~-----~lgip~iIVViNK~Dlv~~~ 421 (666)
||||||+.+|...+..++..+|++|+|+|++.... + ......+. ++. ..++| +++|+||+|+...
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~- 119 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L----VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDA- 119 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H----HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCC-
Confidence 99999999998888888999999999999987521 1 11111222 111 13577 9999999999742
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....++.. .+....+....++++++||++|.|+.+
T Consensus 120 -~~~~~~~~----~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 120 -LTAVKITQ----LLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred -CCHHHHHH----HhCCccccCceEEEEEeeCCCCCchHH
Confidence 11122222 111111111234689999999999976
No 108
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=3.5e-16 Score=150.06 Aligned_cols=144 Identities=23% Similarity=0.241 Sum_probs=94.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhccccccccc--ccCeEEEEEEEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER--ERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~--~~GiTid~~~~~~~~~~~ 344 (666)
++|+++|++|+|||||+++|+...- .... ..+.++......+.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-------------------------------EPQQLSTYALTLYKHNAKFEGKTI 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCcCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999984210 0111 112222222223333456
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+++|......++..+|++|+|+|++.+... ......+..++.. ++| +|+|+||+|+...
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~-- 119 (161)
T cd04124 50 LVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITY-------KNLSKWYEELREYRPEIP-CIVVANKIDLDPS-- 119 (161)
T ss_pred EEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhCCCCc-EEEEEECccCchh--
Confidence 788999999999998888899999999999999875211 1122333334333 566 9999999998531
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+...+.+.. .++++++||++|.|+.+
T Consensus 120 -~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 120 -V----TQKKFNFAEKH-----NLPLYYVSAADGTNVVK 148 (161)
T ss_pred -H----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Confidence 1 11122222222 24789999999999976
No 109
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.70 E-value=2.1e-16 Score=153.12 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=95.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|+.|+|||||+++|....- . ...+++..+. ..+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~--~------------------------------~~~~t~g~~~--~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS--V------------------------------TTIPTVGFNV--ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC--c------------------------------cccCCcccce--EEEEECCE
Confidence 458999999999999999999973210 0 0011111221 23334678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|...+...+..+|++|+|+|++... .+. ....+...++. ..++| +++|+||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RID---EARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---hHH---HHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 8999999999999888888889999999999998742 111 11122222322 23466 9999999998642
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... +++...+.........+.++++||++|.|+.+
T Consensus 126 -~~~----~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 126 -MKP----HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred -CCH----HHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 111 22333322111122234689999999999965
No 110
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.70 E-value=3.5e-17 Score=176.68 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=114.5
Q ss_pred ccccccccccccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHH
Q 005973 226 MSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEA 305 (666)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~ 305 (666)
++++++..+.+...++++++.....++. .+..+.....++|+|+|++|+|||||+|+|++.. .+
T Consensus 152 ~~~~~~~i~~ri~~l~~~L~~~~~~~~~---~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~------------ 215 (351)
T TIGR03156 152 LETDRRLIRERIAQLKKELEKVEKQRER---QRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VY------------ 215 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-ee------------
Confidence 3455555555556666666655555442 1222323355899999999999999999999532 11
Q ss_pred hhhCCCcchhhhcccccccccccCeEEEEEEEEEec-CCeEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEe
Q 005973 306 KLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVID 376 (666)
Q Consensus 306 ~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~~~i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVD 376 (666)
.....+.|+++....+.. ++..+.||||||+.+ -+..++..+..||++|+|+|
T Consensus 216 ------------------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD 277 (351)
T TIGR03156 216 ------------------AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVD 277 (351)
T ss_pred ------------------eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEE
Confidence 111246677777777776 567899999999721 12334556788999999999
Q ss_pred CCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeec
Q 005973 377 ASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (666)
Q Consensus 377 a~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA 453 (666)
++++... .+......++..+ +.| +|+|+||+|+.+. .... .... . ..+++++||
T Consensus 278 ~s~~~~~-------~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~--~~v~-------~~~~--~----~~~~i~iSA 334 (351)
T TIGR03156 278 ASDPDRE-------EQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDE--PRIE-------RLEE--G----YPEAVFVSA 334 (351)
T ss_pred CCCCchH-------HHHHHHHHHHHHhccCCCC-EEEEEEeecCCCh--HhHH-------HHHh--C----CCCEEEEEc
Confidence 9876321 2222233444544 455 9999999999742 1111 1111 1 135799999
Q ss_pred ccCCCccc
Q 005973 454 LENQNLVT 461 (666)
Q Consensus 454 ~tG~nI~e 461 (666)
++|.|+.+
T Consensus 335 ktg~GI~e 342 (351)
T TIGR03156 335 KTGEGLDL 342 (351)
T ss_pred cCCCCHHH
Confidence 99999965
No 111
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=2.3e-16 Score=150.54 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=94.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEE--EEecCC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDSKN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~--~~~~~~ 343 (666)
.++|+++|.+|+|||||++++++.... . +..+ ++.+.... .+....
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~--~-----------------------------~~~~-t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV--T-----------------------------DYDP-TIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--c-----------------------------ccCC-CccceEEEEEEECCEE
Confidence 478999999999999999999853210 0 0001 11111111 222233
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.... +..+.....+........++| +|+|+||+|+......
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~ 125 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKV 125 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhCCCCCC-EEEEeeCcccccccee
Confidence 568899999999998888888999999999999987521 111111111111111123566 9999999998742111
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++...+++..+ ++++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 126 S----REEGQELARKLK-----IPYIETSAKDRLNVDK 154 (164)
T ss_pred c----HHHHHHHHHHcC-----CcEEEeeCCCCCCHHH
Confidence 1 122333443333 4789999999999966
No 112
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=1.6e-16 Score=150.58 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=95.0
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEEEe
Q 005973 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (666)
Q Consensus 271 IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~liD 350 (666)
|+|++|+|||||+++|++... .....+|+|++.....+...+..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999984311 1112357777776677777788999999
Q ss_pred CCCccchHHH------HHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 351 SPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 351 TPGh~~f~~~------~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
|||+.++... +...+ ..+|++|+|+|+.... +....+..+...++| +|+|+||+|+.+..
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~- 117 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE----------RNLYLTLQLLELGLP-VVVALNMIDEAEKR- 117 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch----------hHHHHHHHHHHcCCC-EEEEEehhhhcccc-
Confidence 9998776532 23333 4899999999998641 222333445567888 99999999997532
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .....+.+.++ .+++++||++|.|+.+
T Consensus 118 -~~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 118 -GIK---IDLDKLSELLG-----VPVVPTSARKGEGIDE 147 (158)
T ss_pred -cch---hhHHHHHHhhC-----CCeEEEEccCCCCHHH
Confidence 111 11222222223 4789999999999965
No 113
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=8e-16 Score=146.66 Aligned_cols=147 Identities=13% Similarity=0.191 Sum_probs=96.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe----cC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----SK 342 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~----~~ 342 (666)
++|+++|..++|||||+++|+.... ..+..+.+..+.....+. ..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-------------------------------TKDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCcEEEEEEEEEEEEcCCCC
Confidence 4799999999999999999984210 111122333333222232 23
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH--HcCCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+++|...+...++.+|++|+|+|+..... +.. ....+..+. ..++| +|+|+||+|+...
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~~----l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 121 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FEA----IESWKEKVEAECGDIP-MVLVQTKIDLLDQ 121 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HHH----HHHHHHHHHHhCCCCC-EEEEEEChhcccc
Confidence 5678999999999998888888999999999999987531 111 111111121 23677 9999999999742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... ++...+.+.++ ++++++||++|.|+.+
T Consensus 122 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 122 AVITN----EEAEALAKRLQ-----LPLFRTSVKDDFNVTE 153 (162)
T ss_pred cCCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 22111 23333444444 4789999999999965
No 114
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=3.8e-16 Score=148.15 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=92.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEE--EEEEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT--VAVAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid--~~~~~~~~~~~ 344 (666)
++|+++|.+|+|||||+++|++..-. . +..+ ++.+ .....+.....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~-----------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--D-----------------------------EYDP-TIEDSYRKQVVIDGETC 49 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--C-----------------------------CcCC-cchheEEEEEEECCEEE
Confidence 58999999999999999999943110 0 0001 0111 11112222334
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+++|...+..++..+|++++|+|..... .+..+.....+........++| +|+|+||+|+... ..
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~-~~- 123 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAAR-TV- 123 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-ee-
Confidence 5778999999999988888899999999999998642 1111111111111111123566 9999999998742 11
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...++..+.+.++ ++++++||++|.|+.+
T Consensus 124 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 124 ---SSRQGQDLAKSYG-----IPYIETSAKTRQGVEE 152 (162)
T ss_pred ---cHHHHHHHHHHhC-----CeEEEecCCCCCCHHH
Confidence 1223333333333 4689999999999976
No 115
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=2.5e-16 Score=176.94 Aligned_cols=145 Identities=27% Similarity=0.323 Sum_probs=106.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~ 86 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGR 86 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCc
Confidence 34789999999999999999999532211 123468898888888888888
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+.. +...+..++..||++|+|+|++.+. .....+.+.+++..+.| +|+|+||+|
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--------s~~~~~i~~~l~~~~~p-iilV~NK~D 157 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA--------TATDEAVARVLRRSGKP-VILAANKVD 157 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 999999999753 3444556778899999999999863 22345566777777888 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.....+ ... +..+++. ..+++||++|.|+.+
T Consensus 158 l~~~~~~--------~~~-~~~~g~~----~~~~iSA~~g~gi~e 189 (472)
T PRK03003 158 DERGEAD--------AAA-LWSLGLG----EPHPVSALHGRGVGD 189 (472)
T ss_pred CCccchh--------hHH-HHhcCCC----CeEEEEcCCCCCcHH
Confidence 8642111 111 1123442 237999999999966
No 116
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.69 E-value=5.8e-16 Score=148.66 Aligned_cols=147 Identities=21% Similarity=0.226 Sum_probs=92.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++|+|||||+++|++.... .....+.|.+.....+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 47999999999999999999843110 11123456666655666677899
Q ss_pred EEEeCCCccch-------H-HHHHHh-cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecc
Q 005973 347 VVLDSPGHKDF-------V-PNMISG-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKM 415 (666)
Q Consensus 347 ~liDTPGh~~f-------~-~~~~~~-~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~ 415 (666)
+||||||+.+. . ...+.. ...+|++|+|+|++.... + .+ ....+.+..++.. ++| +|+|+||+
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~-~~-~~~~~~~~~l~~~~~~~p-vilv~NK~ 123 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---Y-SL-EEQLSLFEEIKPLFKNKP-VIVVLNKI 123 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---c-ch-HHHHHHHHHHHhhcCcCC-eEEEEEcc
Confidence 99999997421 1 111212 234689999999986421 1 01 1122333444443 666 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+... ..... ...+.+. ...+++++||++|.|+.+
T Consensus 124 Dl~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 124 DLLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHH
Confidence 99742 22221 2222211 235789999999999976
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=2.9e-16 Score=149.80 Aligned_cols=147 Identities=24% Similarity=0.222 Sum_probs=93.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|+.++|||||+++|...... . . .+ |+......++..+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~---------------------------~---~--~~--t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV---------------------------T---T--IP--TIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc---------------------------C---c--CC--ccCcCeEEEEECCEEEE
Confidence 5899999999999999999732100 0 0 01 11111223445678899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccccchh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~~e~ 424 (666)
||||||+.+|...+...+..+|++|+|+|++.... +.....+...++.. .+.| +++|+||+|+.+.. .
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~--~ 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR------LGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL--S 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC--C
Confidence 99999999998888888999999999999986410 11111222222222 3566 99999999987421 1
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..++...+. ...+.....+++++||++|.|+.+
T Consensus 118 ~~~i~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 118 EAEISEKLG----LSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred HHHHHHHhC----ccccCCCcEEEEEeeccCCCCHHH
Confidence 222222221 111112235789999999999966
No 118
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.69 E-value=3.3e-16 Score=150.98 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=97.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE--EecC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FDSK 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~--~~~~ 342 (666)
..++|+++|++|+|||||+++|+...- .....+.++.+..... +...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-------------------------------DTQLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CcCcCCceeeEEEEEEEEECCe
Confidence 458999999999999999999983210 1111122223322222 3334
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~ 419 (666)
...+.||||||+++|...+...++.+|++|+|+|.+.... ++.+.....+.+.... ..++| +|+|+||+|+..
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 128 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPE 128 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccc
Confidence 4567899999999998888888999999999999987532 1111111111222111 12466 999999999863
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .. ..+++..+++.+++ .+++++||++|.|+.+
T Consensus 129 ~-~~----~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 129 R-QV----STEEAQAWCRENGD----YPYFETSAKDATNVAA 161 (170)
T ss_pred c-cc----CHHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence 1 11 12334444444442 4689999999999965
No 119
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.69 E-value=3.3e-16 Score=146.15 Aligned_cols=150 Identities=24% Similarity=0.283 Sum_probs=96.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
++|+++|++|+|||||+++|+... ...+..++++.+.....+...+ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-------------------------------FITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-------------------------------CcCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999998432 1223345677776666566666 7
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccch-hHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAK-GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~-~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
.+.+|||||+.++..........++.++.++|....+. .+.... .+.......+.. ++| +++|+||+|+....
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch--
Confidence 88999999999886555555555666666665543211 011011 223323333322 677 99999999997532
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+..++...+...+. .+++++||++|.|+.+
T Consensus 125 ----~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG----EPIIPLSAETGKNIDS 154 (161)
T ss_pred ----hhHHHHHHHhhccC----CceEEeecCCCCCHHH
Confidence 23334444444443 4589999999999965
No 120
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.68 E-value=1.5e-16 Score=138.91 Aligned_cols=88 Identities=32% Similarity=0.538 Sum_probs=83.9
Q ss_pred CCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccc
Q 005973 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 492 ~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
++||+|+|+++|+.+ .|++ ++|+|++|.|++||+|+++|.+..++|++|++++.++++|.|||+|+|.|++++..+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~v-v~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~ 80 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTV-PVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIK 80 (91)
T ss_pred CCCeEEEEEEEEEeCCceEE-EEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcC
Confidence 579999999999988 8888 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEecCCC
Q 005973 571 SGGVLCHPDF 580 (666)
Q Consensus 571 ~G~VL~~~~~ 580 (666)
+|+|||+++.
T Consensus 81 ~G~vl~~~~~ 90 (91)
T cd03693 81 RGDVAGDSKN 90 (91)
T ss_pred CcCEEccCCC
Confidence 9999999864
No 121
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=8.1e-17 Score=160.55 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++....+ ....+.|++.....+...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA-------------------------------EDQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc-------------------------------CCccceeccceeEEEEecC
Confidence 456899999999999999999999532110 0112345554444555444
Q ss_pred e-EEEEEeCCCccch--------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEE
Q 005973 344 Y-HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVA 411 (666)
Q Consensus 344 ~-~i~liDTPGh~~f--------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVV 411 (666)
. .+.||||||+.+. ...+...+..+|++++|+|++.+... .+......++..+ ++| +|+|
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~-------~~~~~~~~~l~~~~~~~~~-viiV 159 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE-------EQIETVEKVLKELGAEDIP-MILV 159 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh-------hHHHHHHHHHHHcCcCCCC-EEEE
Confidence 3 8999999997331 12223345679999999999876311 2223333444443 455 9999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+||+|+.... ... ..+.. ...+++++||++|.|+.+
T Consensus 160 ~NK~Dl~~~~--~~~-------~~~~~-----~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 160 LNKIDLLDDE--ELE-------ERLEA-----GRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEccccCChH--HHH-------HHhhc-----CCCceEEEEcCCCCCHHH
Confidence 9999997421 111 11111 235789999999999965
No 122
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=5e-16 Score=148.96 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|..++|||||+++|... .... ..+.+..+ ...+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~--~~~~------------------------------~~pt~g~~--~~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG--EIVT------------------------------TIPTIGFN--VETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCcc------------------------------cCCCCCcc--eEEEEECCEEE
Confidence 37999999999999999999621 0000 00111111 12344567889
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHHHH---cCCCcEEEEEeccccccccc
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS---FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~---lgip~iIVViNK~Dlv~~~~ 422 (666)
.||||||+.+|...+..+++.+|++|+|+|++... .+ .+..+.+ .++.. ...| +++|+||+|+.+...
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~----~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RI----GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH----HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC
Confidence 99999999999888888899999999999998642 11 1122222 22221 2355 999999999864211
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+++...+ ....+....+.++++||++|.|+.+
T Consensus 119 --~~~i~~~~----~~~~~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 119 --AAEVTDKL----GLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred --HHHHHHHh----CccccCCCCEEEEEeeCCCCCCHHH
Confidence 12222222 1111222345678999999999976
No 123
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=4e-16 Score=150.05 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=94.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
++|+++|++|+|||||+++|++..-. ....+.++.+.....+...+ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------cCcCCccceEEEEEEEEECCEEE
Confidence 47999999999999999999843110 00111122222222333333 4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc------CCCcEEEEEeccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLIVAVNKMDAV 418 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l------gip~iIVViNK~Dlv 418 (666)
.+.||||||+..|.......++.+|++|+|+|+..+.. +. ......-.++..+ ++| +++|+||+|+.
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---FE---SLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 56799999999998888888999999999999987521 11 1111111222222 566 89999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....... +++..+++..+ .++++++||++|.|+.+
T Consensus 123 ~~~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 123 EKRQVST----KKAQQWCQSNG----NIPYFETSAKEAINVEQ 157 (172)
T ss_pred cccccCH----HHHHHHHHHcC----CceEEEEECCCCCCHHH
Confidence 4211111 22333443333 25789999999999965
No 124
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=6.9e-16 Score=147.24 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--ecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~~~~~ 344 (666)
+||+|+|++++|||||+++|++.... ....+.++.+.....+ .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK-------------------------------EDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeeEEEEEEEECCEEE
Confidence 47999999999999999999843211 1111222333332333 33345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+.+|.......+..+|++|+|+|++++... ..+ .+..+.+..+...++| +++|+||+|+.......
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~~~-~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~ 124 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSF---EAL-PTWLSDARALASPNIV-VILVGNKSDLADQREVT 124 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHH---HHH-HHHHHHHHHhCCCCCe-EEEEEEchhcchhccCC
Confidence 788999999999988888888999999999999875311 111 1111111222223666 99999999987421111
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.++...+++..+ ++++++||++|.|+.+
T Consensus 125 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 125 ----FLEASRFAQENG-----LLFLETSALTGENVEE 152 (161)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 122333333333 4789999999999966
No 125
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=5.2e-16 Score=146.23 Aligned_cols=137 Identities=26% Similarity=0.277 Sum_probs=94.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++|+|||||+++|++..... ....+++|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI------------------------------VSDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe------------------------------ccCCCCCccceEEEEEEeCCEEE
Confidence 479999999999999999998432111 01124667666666677778899
Q ss_pred EEEeCCCccchHH--------HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH-HcCCCcEEEEEecccc
Q 005973 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDA 417 (666)
Q Consensus 347 ~liDTPGh~~f~~--------~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgip~iIVViNK~Dl 417 (666)
.+|||||+.++.. .+...+..+|++++|+|+.... ......++. ..+.| +|+|+||+|+
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~-----------~~~~~~~~~~~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL-----------DEEDLEILELPADKP-IIVVLNKSDL 119 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC-----------CHHHHHHHHhhcCCC-EEEEEEchhc
Confidence 9999999866532 2445667899999999999642 111222222 34566 9999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... . .. .....+++++||+++.|+.+
T Consensus 120 ~~~~~--~---------~~-----~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 120 LPDSE--L---------LS-----LLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCccc--c---------cc-----ccCCCceEEEECCCCCCHHH
Confidence 84211 1 11 11245789999999999965
No 126
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=7.7e-16 Score=150.37 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=105.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..+-|+++|++|+|||||+|+|+++...+. ....+|.|..+.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr-----------------------------tSktPGrTq~iNff~~~~~-- 71 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR-----------------------------TSKTPGRTQLINFFEVDDE-- 71 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee-----------------------------cCCCCCccceeEEEEecCc--
Confidence 345599999999999999999997544321 2234788988777665543
Q ss_pred EEEEEeCCCc----------cchHHHHHHhc---ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEE
Q 005973 345 HVVVLDSPGH----------KDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (666)
Q Consensus 345 ~i~liDTPGh----------~~f~~~~~~~~---~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 411 (666)
+.|+|.||. +.+...+..++ ....+++++||+.++ +...++++++++...++| ++||
T Consensus 72 -~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~--------~~~~D~em~~~l~~~~i~-~~vv 141 (200)
T COG0218 72 -LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP--------PKDLDREMIEFLLELGIP-VIVV 141 (200)
T ss_pred -EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-eEEE
Confidence 889999992 23444444444 347789999999998 456788999999999999 8999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCC-CCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~-~i~iIpvSA~tG~nI~e 461 (666)
+||||++..++ .. +.+....+.+.+... ...++..|+.++.|+++
T Consensus 142 ~tK~DKi~~~~--~~---k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 142 LTKADKLKKSE--RN---KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDE 187 (200)
T ss_pred EEccccCChhH--HH---HHHHHHHHHhcCCCCccceEEEEecccccCHHH
Confidence 99999996322 22 222222222232221 11278899999999866
No 127
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=1.5e-15 Score=144.71 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=96.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
++|+++|++|+|||||+++|++... .....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-------------------------------SEQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999984311 111123334444444444444 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.|||+||+.+|.......+..+|++|+|+|+.+.... + .....+..+.. .++| +++|+||+|+....
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~---~----~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~ 121 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESF---E----NLKNWLKELREYADPNVV-IMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHH---H----HHHHHHHHHHHhCCCCCe-EEEEEEchhccccc
Confidence 788999999999988888888999999999999875211 1 11111222222 2466 99999999987421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... +....+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 122 QVSR----EEAEAFAEEHG-----LPFFETSAKTNTNVEE 152 (164)
T ss_pred CCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1111 12223333333 4689999999999965
No 128
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=6.9e-16 Score=153.37 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=94.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++|++|+|||||+++|++.. ......+|+|++..... ..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-------------------------------~~~~~~~~~t~~~~~~~--~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-------------------------------VRVGKRPGVTRKPNHYD--WG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------CccCCCCceeeCceEEe--ec--
Confidence 45789999999999999999998421 01123357776644333 22
Q ss_pred EEEEEeCCCc-----------cchHHHHHH----hcccCCEEEEEEeCCCCccc-cccc--cchhHHHHHHHHHHHcCCC
Q 005973 345 HVVVLDSPGH-----------KDFVPNMIS----GATQSDAAILVIDASVGSFE-VGMN--TAKGLTREHAQLIRSFGVD 406 (666)
Q Consensus 345 ~i~liDTPGh-----------~~f~~~~~~----~~~~aD~aIlVVDa~~g~~e-~~~~--~~~~qt~e~l~ll~~lgip 406 (666)
.+.||||||+ +.|...+.. ++..++++++|+|+...... ..+. ....++.+++..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 5899999994 334333322 34557899999998642100 0000 0122445666777777888
Q ss_pred cEEEEEeccccccccchhhhHHHHHHhhhhhhcCc----CCCCCcEEEeecccCCCccc
Q 005973 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF----KDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 407 ~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~----~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+|+||+|+.+...+.. +++.. .+++ .....+++++||++| |+.+
T Consensus 133 -~iiv~NK~Dl~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 133 -PIVAVNKMDKIKNRDEVL----DEIAE---RLGLYPPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred -eEEEEECccccCcHHHHH----HHHHH---HhcCCccccccCCcEEEEecccC-CHHH
Confidence 899999999974321122 22222 2222 111236899999999 9966
No 129
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.68 E-value=1.5e-15 Score=145.76 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=96.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--C
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~ 343 (666)
.++|+|+|..|+|||||+++|++... ......+++.+.....+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY-------------------------------TESYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEECCEE
Confidence 47899999999999999999984211 11112233333333333333 4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|.......++.+|++|+|+|+++.. .| ....+.+..+.. -++| +|+|.||+|+...
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~----~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~ 122 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF----NNVKQWLQEIDRYASENVN-KLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HH----HhHHHHHHHHHHhCCCCCc-EEEEEEChhcccc
Confidence 56889999999999888888889999999999998742 11 122222333333 2456 8999999998642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .++...+.+.++ ++++++||++|.|+.+
T Consensus 123 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 123 RVVD----YSEAQEFADELG-----IPFLETSAKNATNVEQ 154 (166)
T ss_pred cCCC----HHHHHHHHHHcC-----CeEEEEECCCCcCHHH
Confidence 2211 122333333333 4789999999999976
No 130
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.68 E-value=9.3e-16 Score=146.37 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=94.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--ecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~~~~~ 344 (666)
++|+++|++++|||||+++|++..- ..+..+.++.+.....+ .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-------------------------------VSKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCccceeEEEEEEEECCeEE
Confidence 4799999999999999999984311 11122333333333333 33456
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~ 420 (666)
.+.||||||+.+|.......+..+|++|+|+|+++... +..+.....+....... .+.| +|+|+||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 125 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKH 125 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcccc
Confidence 78899999999998888788899999999999987521 11111111111111111 2345 9999999998731
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ..+...+....+ ++++++||++|.|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 126 RAVS----EDEGRLWAESKG-----FKYFETSACTGEGVNE 157 (168)
T ss_pred cccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1111 122222333333 4689999999999976
No 131
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.68 E-value=1.3e-15 Score=145.42 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++++|||||+++|++..-.. ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999999432110 011122333333333444455678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccccch
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~~e 423 (666)
.||||||+++|.......++.+|++|+|+|++.... + .+....+..+... ++| +|+++||+|+......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~ 124 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F----EKAKSWVKELQRNASPNII-IALVGNKADLESKRQV 124 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC
Confidence 899999999988887778889999999999986521 1 1223333333333 355 8999999998742111
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. +++..+....+ ++++++||++|.|+.+
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 125 ST----EEAQEYADENG-----LLFFETSAKTGENVNE 153 (163)
T ss_pred CH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 11 22333333333 4689999999999965
No 132
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.67 E-value=9.2e-16 Score=153.49 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=98.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
+.|+++|..++|||||+.+++.. .+..+....++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~-------------------------------~f~~~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDD-------------------------------TFCEACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhC-------------------------------CCCCcCCCcceeEEEEEEEEECCEEE
Confidence 36999999999999999999832 11122223334444444455444 6
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||+|+++|...+..+++.+|++|+|+|+++... |+. ....+..+.. -++| +|+|.||+|+....
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~~----l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~ 121 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FDD----LPKWMKMIDKYASEDAE-LLLVGNKLDCETDR 121 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HHH----HHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 77899999999999888889999999999999987532 221 1122223332 2456 99999999986421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
+ . ...+...+.+.. ..+.++++||++|.|+.+.
T Consensus 122 ~--v--~~~~~~~~a~~~----~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 122 E--I--SRQQGEKFAQQI----TGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred c--c--CHHHHHHHHHhc----CCCEEEEecCCCCCCHHHH
Confidence 1 1 112222333222 1246899999999999773
No 133
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=1.1e-15 Score=147.38 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=95.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--ecCC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~~~~ 343 (666)
.++|+++|.+|+|||||+++|++..- ..+..+.++.+.....+ ....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-------------------------------NPSFISTIGIDFKIRTIELDGKK 51 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-------------------------------CcccccCccceEEEEEEEECCEE
Confidence 57999999999999999999984210 11111222223222233 3334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|.......+..+|++|+|+|++.+.. |. .....+..+.. .++| +|+|+||+|+.+.
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~ 123 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE----NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEK 123 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH----hHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 578899999999988888788899999999999986521 11 11222222222 2456 8999999999742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .++...+++..+ .+++++||++|.|+.+
T Consensus 124 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 124 RVVS----KEEGEALADEYG-----IKFLETSAKANINVEE 155 (167)
T ss_pred cCCC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 2111 122333333333 4689999999999976
No 134
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=6e-16 Score=147.95 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=92.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeE-EEEEEEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiT-id~~~~~~~~~~~~ 345 (666)
.+|+|+|++|+|||||+++|++..... . ..+.++ .......+......
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~-----------------------------~~~t~~~~~~~~~~~~~~~~~ 49 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--D-----------------------------YDPTIEDSYRKQIEIDGEVCL 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--c-----------------------------cCCchhhhEEEEEEECCEEEE
Confidence 379999999999999999998432110 0 000000 00111122233467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
+.||||||+++|.......+..+|++|+|+|+..... ++.+...............+| +|+|+||+|+.......
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~- 124 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS- 124 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc-
Confidence 8899999999998888888999999999999987421 111111111111111123566 99999999987421111
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+...+.+..+ ++++++||++|.|+.+
T Consensus 125 ---~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 125 ---TEEGKELARQWG-----CPFLETSAKERVNVDE 152 (164)
T ss_pred ---HHHHHHHHHHcC-----CEEEEeecCCCCCHHH
Confidence 122233333332 5789999999999966
No 135
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=5.4e-16 Score=150.92 Aligned_cols=149 Identities=23% Similarity=0.188 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
..+|+++|+.|+|||||+++|+..... . ...|+......+...+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~------------------------------~----~~~t~~~~~~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV------------------------------H----TSPTIGSNVEEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC------------------------------C----cCCccccceEEEEECCeE
Confidence 478999999999999999999832100 0 011222222344556788
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~~ 422 (666)
+.||||||+..|...+...+..+|++|+|+|++.... +.....+...++.. .++| +++++||+|+...
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~------~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~-- 131 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER------LPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA-- 131 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH------HHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC--
Confidence 9999999999998888888899999999999986521 11111222223322 2456 9999999998642
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.+.. .......++++++||++|+|+.+
T Consensus 132 ~~~~~i~~~l~~----~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 132 MTPAEISESLGL----TSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred CCHHHHHHHhCc----ccccCCceEEEecccCCCCCHHH
Confidence 112223332221 11112245789999999999976
No 136
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.67 E-value=7.5e-16 Score=149.91 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe----
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---- 340 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~---- 340 (666)
..++|+++|..|+|||||+++|+...- .....+.+..+.....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF-------------------------------NPKFITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CccCCCccceEEEEEEEEEcCc
Confidence 358899999999999999999984211 011112222222222221
Q ss_pred --------cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc----CCCcE
Q 005973 341 --------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQL 408 (666)
Q Consensus 341 --------~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~i 408 (666)
.....+.||||||+++|.......++.+|++|+|+|+++... +. .....+..+... +.| +
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~p-i 123 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL----NVRNWMSQLQTHAYCENPD-I 123 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCc-E
Confidence 123678899999999998888888999999999999986421 11 112222222221 444 9
Q ss_pred EEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 409 IVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|.||+|+.+..... .+++..+.+.++ ++++++||++|.|+.+
T Consensus 124 iiv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 124 VLCGNKADLEDQRQVS----EEQAKALADKYG-----IPYFETSAATGTNVEK 167 (180)
T ss_pred EEEEeCccchhcCccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 9999999997421111 123344444443 4689999999999976
No 137
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=1.3e-15 Score=149.50 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++|..++|||||+++|... ... ...+.+..+ ...++..+.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~--~~~------------------------------~~~pt~g~~--~~~~~~~~~ 61 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLG--EIV------------------------------TTIPTIGFN--VETVEYKNI 61 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCc------------------------------cccCCccee--EEEEEECCE
Confidence 4578999999999999999999731 000 001111222 234556778
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHHHH---cCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
.+.||||||+.+|...+...+..+|++|+|+|++... .+ ......+ .++.. .++| ++||+||+|+.+.
T Consensus 62 ~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~---s~----~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV----VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH---HH----HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 8999999999999888888899999999999998642 11 1111111 22211 2455 9999999998742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+ ++...+.-..+....+.++++||++|+|+.+
T Consensus 134 ~--~~~----~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 134 M--NAA----EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred C--CHH----HHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 1 122 2222221112222234567899999999976
No 138
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.67 E-value=1.2e-15 Score=146.10 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=96.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-- 343 (666)
.++|+++|.+++|||||+++|+...- ..+..+.++.+.....+...+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-------------------------------NLDSKSTIGVEFATRSIQIDGKT 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceEEEEEEEEECCEE
Confidence 37899999999999999999984311 111123333333334444433
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|.......+..++++|+|+|+++... +. ...+.+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~ 123 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE----NVERWLKELRDHADSNIV-IMLVGNKSDLRHL 123 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhCCCCCe-EEEEEECcccccc
Confidence 568899999999988888888899999999999986421 11 11122222222 2456 9999999998742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .++...++... .++++++||++|.|+.+
T Consensus 124 ~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 124 RAVP----TEEAKAFAEKN-----GLSFIETSALDGTNVEE 155 (165)
T ss_pred ccCC----HHHHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence 2111 12233333322 25789999999999965
No 139
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.67 E-value=7e-16 Score=147.03 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=91.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--ecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~~~~~ 344 (666)
++|+|+|.+|+|||||+++|+...- .. ...+. +.+.....+ +....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~-----------------------------~~~~t-~~~~~~~~~~~~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VE-----------------------------KYDPT-IEDSYRKQIEVDGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--Cc-----------------------------ccCCc-hhhhEEEEEEECCEEE
Confidence 6899999999999999999984311 00 00010 101111122 22335
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~ 420 (666)
.+.||||||+++|......+++.+|++|+|+|.+.... ++ .....+..+.. .++| +|+|+||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 121 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN----DLQDLREQILRVKDTENVP-MVLVGNKCDLEDE 121 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 67799999999998888888899999999999986421 11 11222222222 2566 8999999998642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .++...+.+.++ .+++++||++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 122 RVVS----REEGQALARQWG-----CPFYETSAKSKINVDE 153 (163)
T ss_pred ceec----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 1111 112222333222 5789999999999966
No 140
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.67 E-value=2.3e-15 Score=142.44 Aligned_cols=150 Identities=23% Similarity=0.243 Sum_probs=97.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
...+|+++|.+|+|||||+++|++....+.. .....+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS------------------------------PKPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEecc------------------------------CCCCceeceEEEEEEcCCe
Confidence 3578999999999999999999854211110 0112233333333444567
Q ss_pred EEEEEeCCCccch--------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f--------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+... .......+..+|++++|+|+.... .......+..+...+.| +++|+||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--------GEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--------CchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 8999999996543 223445578899999999998751 22344555666666788 899999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+... ..........+.. ..+ ..+++++|++++.|+.+
T Consensus 123 l~~~-~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 123 LVKD-KEDLLPLLEKLKE---LGP----FAEIFPISALKGENVDE 159 (168)
T ss_pred cccc-HHHHHHHHHHHHh---ccC----CCceEEEEeccCCChHH
Confidence 9732 2222223322222 221 24789999999999965
No 141
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.67 E-value=7.9e-16 Score=148.03 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=95.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|+.++|||||+++|+... .... .....|..+......+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMAD---------------------------CPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCcccceeEEEEEEEECCEEEEE
Confidence 789999999999999999998421 0000 00011222222222333334578
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccccch
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~~e 423 (666)
.||||||+.+|.......++.+|++|+|+|++.... |+ ...+.+..+... +.| +|+|.||+|+......
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~----~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~ 125 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN----HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV 125 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc
Confidence 899999999999888888999999999999987521 11 122222222222 344 8999999999743221
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++...+++..+ ++++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 126 T----YEEAKQFADENG-----LLFLECSAKTGENVED 154 (166)
T ss_pred C----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 1 123333443333 4789999999999976
No 142
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=7.5e-16 Score=181.08 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=108.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------------------------v~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------------------------VNDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------------------------cCCCCCCCcCcceeEEEECCC
Confidence 35799999999999999999999542211 112367888877677777888
Q ss_pred EEEEEeCCCcc---------chHHH--HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 345 HVVVLDSPGHK---------DFVPN--MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 345 ~i~liDTPGh~---------~f~~~--~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
.+.||||||+. ++... ...++..+|++|+|+|++.+. ..+....+..+...+.| +|+|+|
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~--------s~~~~~i~~~~~~~~~p-iIiV~N 569 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPI--------SEQDLKVMSMAVDAGRA-LVLVFN 569 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 89999999963 22222 234568899999999999873 34666666667777888 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|+.+ .+..+.+.+++...+.... ..+++++||++|.|+.+
T Consensus 570 K~DL~~--~~~~~~~~~~~~~~l~~~~----~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 570 KWDLMD--EFRRQRLERLWKTEFDRVT----WARRVNLSAKTGWHTNR 611 (712)
T ss_pred chhcCC--hhHHHHHHHHHHHhccCCC----CCCEEEEECCCCCCHHH
Confidence 999974 2223334444443332222 35779999999999976
No 143
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=6.1e-16 Score=148.23 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=92.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--Ce
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~~ 344 (666)
++|+++|.+|+|||||+++|+.. .... ...+ ++.+.....+... ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~-----------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVE-----------------------------KYDP-TIEDSYRKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCc-----------------------------ccCC-cchheEEEEEEECCEEE
Confidence 58999999999999999999832 1100 0001 1111111223333 45
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+.+|.......+..+|++|+|+|.+.... |+.+.....+........++| +|+|+||+|+.......
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 125 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG 125 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc
Confidence 67799999999999888888999999999999876421 111111111111111123566 99999999997421111
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++..+.+.++ ++++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 126 K----EQGQNLARQWG-----CAFLETSAKAKINVNE 153 (164)
T ss_pred H----HHHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 1 12223333333 4789999999999976
No 144
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=1.3e-15 Score=146.52 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+|+|..|+|||||+++|++..-.. . .....|++..............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--A---------------------------FVSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--C---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 689999999999999999998431100 0 00011222222222222234678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccccch
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~~e 423 (666)
.||||||+.+|.......++.+|++|+|+|++... .++ +..+.+..+... ..| +++|+||+|+......
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 124 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFN----AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVV 124 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCC-EEEEEECcccCccccc
Confidence 89999999999888888899999999999997642 111 222222223322 344 9999999999742211
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++...+.+.++ ++++++||++|.|+.+
T Consensus 125 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 125 S----SERGRQLADQLG-----FEFFEASAKENINVKQ 153 (165)
T ss_pred C----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 1 122233333334 3689999999999966
No 145
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.66 E-value=2.8e-15 Score=140.74 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=97.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--cCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~~~~ 344 (666)
++|+++|++++|||||+++|++..... ...+..+.+.....+. ....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-------------------------------NYKSTIGVDFKSKTIEIDGKTV 49 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-------------------------------ccCCceeeeeEEEEEEECCEEE
Confidence 479999999999999999998432211 1112222333333333 3447
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~ 421 (666)
.+.|||+||+..+.......+..+|++|+|+|+.... .+ ......+..+... +.| +++|+||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~----~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 121 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE---SF----ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhCCCCCc-EEEEEEcccccccc
Confidence 7889999999999988888899999999999998642 11 1222233333333 366 99999999996221
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. ..+++..+.... .++++.+||++|.|+.+
T Consensus 122 ~~----~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 122 QV----STEEAQQFAKEN-----GLLFFETSAKTGENVEE 152 (159)
T ss_pred cc----cHHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Confidence 21 123334444332 35789999999999966
No 146
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.3e-16 Score=147.74 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=103.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhccccccccccc--CeEEEEEEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER--GITMTVAVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~--GiTid~~~~~~~~ 341 (666)
...++|+++|..++|||||+-|+... .+.+..++ |..+-.....+..
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~-------------------------------~F~e~~e~TIGaaF~tktv~~~~ 51 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKD-------------------------------QFHENIEPTIGAAFLTKTVTVDD 51 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhC-------------------------------ccccccccccccEEEEEEEEeCC
Confidence 35689999999999999999999821 11221222 2222222333333
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEE--EEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV--AVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV--ViNK~Dlv~ 419 (666)
....|.||||+|+++|-.....+++.|+++|+|+|+++.. .| ...+..+.-+....-|++|+ |.||+|+..
T Consensus 52 ~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~---SF----~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 52 NTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEE---SF----EKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHH---HH----HHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 4578889999999999988888999999999999999752 22 23334444444444465554 889999985
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+.. .++...+....+ ..|+.+||++|.|+.+
T Consensus 125 ~R~V~----~~ea~~yAe~~g-----ll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 125 RREVE----FEEAQAYAESQG-----LLFFETSAKTGENVNE 157 (200)
T ss_pred ccccc----HHHHHHHHHhcC-----CEEEEEecccccCHHH
Confidence 32222 244455555544 4789999999999976
No 147
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=7.3e-16 Score=171.61 Aligned_cols=143 Identities=24% Similarity=0.270 Sum_probs=105.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+|+|++|+|||||+++|++....+. ....|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v------------------------------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------CCCCCCcccceEEEEEECCcEE
Confidence 5799999999999999999985422211 1235788887777788888999
Q ss_pred EEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 347 VVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 347 ~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.||||||+.+ +......++..+|++|+|||+..+. .....+.+.+++..+.| +|+|+||+|+.
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~--------~~~~~~~~~~l~~~~~p-iilv~NK~D~~ 122 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL--------TPADEEIAKILRKSNKP-VILVVNKVDGP 122 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCc-EEEEEECccCc
Confidence 9999999887 3333455678899999999998762 34455667778888888 99999999975
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+. .. .+..+ ..+++. .++++||++|.|+.+
T Consensus 123 ~~-~~-------~~~~~-~~lg~~----~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 123 DE-EA-------DAYEF-YSLGLG----EPYPISAEHGRGIGD 152 (435)
T ss_pred cc-hh-------hHHHH-HhcCCC----CCEEEEeeCCCCHHH
Confidence 31 11 11111 233442 358999999999965
No 148
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=2.1e-15 Score=145.54 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=97.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+|+|++|+|||||+++|+...... ......|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 4789999999999999999998431110 00011233333333333333457
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~~ 422 (666)
+.||||||+++|.......+..+|++|+|+|++.... +. .....+..++. .++| +|+|+||+|+.....
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~ 126 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN----HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE 126 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhCCCCCc-EEEEEECcccccccC
Confidence 8899999999988888888899999999999986421 11 11222222222 2566 999999999874211
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .++...++...+ ++++++||++|+|+.+
T Consensus 127 ~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 127 VS----YEEGEAFAKEHG-----LIFMETSAKTASNVEE 156 (168)
T ss_pred CC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11 122333333333 4689999999999976
No 149
>PRK11058 GTPase HflX; Provisional
Probab=99.66 E-value=9.6e-17 Score=177.23 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=113.7
Q ss_pred ccccccccccccccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHH
Q 005973 224 KNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEK 303 (666)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k 303 (666)
++++++++..+.+...++++++.....++ ..+..+.....+.|+|+|++|||||||+|+|++....
T Consensus 158 ~~~e~d~r~i~~ri~~l~~~L~~~~~~r~---~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~----------- 223 (426)
T PRK11058 158 TQLETDRRLLRNRIVQILSRLERVEKQRE---QGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY----------- 223 (426)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-----------
Confidence 45666776666665666666655544443 1122222234478999999999999999999843211
Q ss_pred HHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe-EEEEEeCCCccch--------HHHHHHhcccCCEEEEE
Q 005973 304 EAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HVVVLDSPGHKDF--------VPNMISGATQSDAAILV 374 (666)
Q Consensus 304 ~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~-~i~liDTPGh~~f--------~~~~~~~~~~aD~aIlV 374 (666)
.....++|++.....+...+. .++||||||+.+. +..++..+..||++|+|
T Consensus 224 --------------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~V 283 (426)
T PRK11058 224 --------------------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHV 283 (426)
T ss_pred --------------------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEE
Confidence 111246677777666666553 8899999997432 23345667889999999
Q ss_pred EeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecc
Q 005973 375 IDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (666)
Q Consensus 375 VDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~ 454 (666)
+|++++.+...+ ......+..+...++| +|+|+||+|+....... + ... ..++ ..++++||+
T Consensus 284 vDaS~~~~~e~l----~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~~~---~----~~~--~~~~----~~~v~ISAk 345 (426)
T PRK11058 284 VDAADVRVQENI----EAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFEPR---I----DRD--EENK----PIRVWLSAQ 345 (426)
T ss_pred EeCCCccHHHHH----HHHHHHHHHhccCCCC-EEEEEEcccCCCchhHH---H----HHH--hcCC----CceEEEeCC
Confidence 999886322100 0112223333333566 89999999997421111 1 100 1121 124889999
Q ss_pred cCCCccc
Q 005973 455 ENQNLVT 461 (666)
Q Consensus 455 tG~nI~e 461 (666)
+|.|+.+
T Consensus 346 tG~GIde 352 (426)
T PRK11058 346 TGAGIPL 352 (426)
T ss_pred CCCCHHH
Confidence 9999965
No 150
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.66 E-value=1.8e-15 Score=152.52 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=96.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---CC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KN 343 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~---~~ 343 (666)
++|+|+|.+|+|||||+++|++.. ...+..+.++.+.....+.. ..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-------------------------------~~~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-------------------------------FGKSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-------------------------------CCCCCCCceeEEEEEEEEEeCCCCE
Confidence 479999999999999999998421 11122234444544444443 24
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-----CCCcEEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVViNK~Dlv 418 (666)
..+.||||||+..|.......++.+|++|||+|++.... |. ...+.+..+... ..+++|+|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~----~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE----NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 678899999999888888888899999999999987521 11 122222223222 112389999999996
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... ..++...+.+..+ ++++++||++|+|+.+
T Consensus 123 ~~~~v----~~~~~~~~~~~~~-----~~~~~iSAktg~gv~~ 156 (215)
T cd04109 123 HNRTV----KDDKHARFAQANG-----MESCLVSAKTGDRVNL 156 (215)
T ss_pred ccccc----CHHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 32111 1123333443333 4679999999999976
No 151
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=1.3e-15 Score=145.26 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=95.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++|+|||||+++|++..... ......+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 479999999999999999998431110 011122333333323333334678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccccc
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~~~ 422 (666)
.||||||+..|.......++.+|++|+|+|++.... +. .....+..+.. .++| +++|+||+|+.....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~ 123 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT----NLETWLNELETYSTNNDIV-KMLVGNKIDKENREV 123 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH----hHHHHHHHHHHhCCCCCCc-EEEEEECCccccccc
Confidence 999999999998887788889999999999986521 11 11112222222 3555 899999999973221
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~-----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 124 T-----REEGLKFARKHN-----MLFIETSAKTRDGVQQ 152 (161)
T ss_pred C-----HHHHHHHHHHcC-----CEEEEEecCCCCCHHH
Confidence 1 122333333323 5789999999999966
No 152
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.66 E-value=7.9e-16 Score=146.53 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=92.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+|.+|+|||||+++|+...-.- .....|.+. ....+ .....+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------------------------~~~t~~~~~--~~~~~-~~~~~l~ 47 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------------------------TIPTVGFNV--EMLQL-EKHLSLT 47 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------------------------ccCccCcce--EEEEe-CCceEEE
Confidence 48999999999999999998431100 000112111 11111 1356899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEeccccccccchh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
||||||+..+...+...+..+|++|+|+|++++.. + .....+...+++ ..++| +++|+||+|+... ..
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~~ 118 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGA--LT 118 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccC--cC
Confidence 99999999988888888899999999999987521 1 111112222222 14667 9999999998632 11
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+++...+. +..+.. ...++++++||++|+|+.+
T Consensus 119 ~~~i~~~~~--~~~~~~-~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 119 AEEITRRFK--LKKYCS-DRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred HHHHHHHcC--CcccCC-CCcEEEEecccccCCChHH
Confidence 222322221 011111 1235789999999999976
No 153
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.66 E-value=8.6e-16 Score=146.11 Aligned_cols=146 Identities=22% Similarity=0.194 Sum_probs=95.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|+.|+|||||+++|++.... +. ..|+......+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--------------------------------~~--~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--------------------------------TT--IPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--------------------------------CC--CCCcCcceEEEEECCEEEE
Confidence 5899999999999999999954200 00 0111122233444578899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHH---HcCCCcEEEEEeccccccccch
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIR---SFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~---~lgip~iIVViNK~Dlv~~~~e 423 (666)
||||||+..|.......+..+|++|+|+|++.+.. + ......+. +.. ..+.| +++|+||+|+... .
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~----~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~--~ 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I----EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGA--L 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHhCcccCCCc-EEEEeeccCCccc--c
Confidence 99999999988777778889999999999987521 1 11222222 112 23566 9999999998742 2
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++.+.+... ......++++++||++|.|+.+
T Consensus 117 ~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 117 SVSELIEKLGLE----KILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred CHHHHHHhhChh----hccCCcEEEEEeeCCCCCCHHH
Confidence 223333332221 1222356899999999999966
No 154
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=2.7e-15 Score=145.65 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--CeE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NYH 345 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~~~ 345 (666)
+|+++|..++|||||+++|+... ...+..+.+..+.....+... ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-------------------------------f~~~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-------------------------------FDKNYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCCCCCceeeEEEEEEEEECCEEEE
Confidence 69999999999999999999421 111222333333333333333 456
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHc--CCCcEEEEEeccccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSF--GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~l--gip~iIVViNK~Dlv~~~~ 422 (666)
+.||||||+++|.......++.+|++|+|+|++.... + ......+..+ +.. +.+++|+|.||+|+.+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L----EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 8899999999999888888999999999999976421 1 1122223222 221 1123899999999864221
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
......+...+.+.++ .+++++||++|.|+.+
T Consensus 124 --~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 124 --YALMEQDAIKLAAEMQ-----AEYWSVSALSGENVRE 155 (170)
T ss_pred --ccccHHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1112223333333333 3689999999999976
No 155
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.65 E-value=1.5e-15 Score=150.38 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=99.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--C
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~ 342 (666)
..++|+|+|..++|||||+.+|... ....+..+.++.+.....+.. .
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG-------------------------------STESPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC-------------------------------CCCCCCCCcceeEEEEEEEEECCE
Confidence 4589999999999999999999832 011111222333333333333 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|...+..+++.+|++|||+|.+.... |+.+ ...+..+.. -++| +|||.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~~~----~~w~~~i~~~~~~~p-iilVGNK~DL~~~ 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FDGI----DRWIKEIDEHAPGVP-KILVGNRLHLAFK 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HHHH----HHHHHHHHHhCCCCC-EEEEEECccchhc
Confidence 4678899999999999888888899999999999987532 2211 222222222 2556 9999999999642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. + ..++...+++..+ ++++++||++|.|+.+
T Consensus 126 ~~--v--~~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 126 RQ--V--ATEQAQAYAERNG-----MTFFEVSPLCNFNITE 157 (189)
T ss_pred cC--C--CHHHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 11 1 1234445554444 4789999999999976
No 156
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.65 E-value=1.2e-15 Score=149.82 Aligned_cols=156 Identities=20% Similarity=0.205 Sum_probs=94.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE-ecCCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~-~~~~~ 344 (666)
.++|+++|+.|+|||||+++|++.... ......|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV------------------------------NTVPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC------------------------------CcCCccccceeEEEeeccCCCce
Confidence 578999999999999999999842110 00011122221111111 22457
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+++|...+...+..+|++|+|+|++.... +........+.+......++| +|+|+||+|+... ..
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~--~~ 126 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA--LS 126 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc--CC
Confidence 89999999999988877777889999999999986421 111111122222333345677 9999999998632 11
Q ss_pred hhHHHHHHhhhhhhcCcC-CCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~-~~~i~iIpvSA~tG~nI~e 461 (666)
.+. +..++....+. ...++++++||++|+|+.+
T Consensus 127 ~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 127 VSE----VEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred HHH----HHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 111 22222111111 1134689999999999976
No 157
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=1.9e-15 Score=147.32 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=95.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++|..++|||||+++|.... .. ...+.+..+. ..+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~--~~------------------------------~~~~t~~~~~--~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGE--SV------------------------------TTIPTIGFNV--ETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--CC------------------------------CcCCccccce--EEEEECCE
Confidence 45899999999999999999996210 00 0012122222 23344678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHHH---cCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
.+.||||||+.+|...+..++..+|++|+|+|++.... + ....+.+. ++.. .++| ++||+||+|+.+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~----~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 129 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I----DEAREELHRMLNEDELRDAV-ILVFANKQDLPDA 129 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H----HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC
Confidence 89999999999998888888899999999999986421 1 12222322 2221 2456 9999999998642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+++...+.. .......+.++++||++|.|+.+
T Consensus 130 ~--~~~~i~~~~~~----~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 130 M--KAAEITEKLGL----HSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred C--CHHHHHHHhCc----cccCCCcEEEEEeeCCCCCCHHH
Confidence 1 11222222211 11112234577999999999976
No 158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.65 E-value=1.4e-15 Score=147.13 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=94.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|..++|||||+++|.+.. . .. ...|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~------------------------------~~--~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F------------------------------MQ--PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C------------------------------CC--cCCcCceeEEEEEECCEEEE
Confidence 58999999999999999998420 0 00 11122222234556788999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccccchh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~~e~ 424 (666)
||||||+.++...+...+..+|++|+|+|++... .+ .....+...++.. .+.| +|+|+||+|+... ..
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~--~~ 117 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---RV---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA--LS 117 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---HH---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC--CC
Confidence 9999999999888888889999999999998642 11 1111222223322 1345 9999999998631 11
Q ss_pred hhHHHHHHhhhhhhcCc-CCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~-~~~~i~iIpvSA~tG~nI~e 461 (666)
.+ ++..+++..++ ....+.++++||++|.|+.+
T Consensus 118 ~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 118 VE----EMTELLSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred HH----HHHHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 12 22222221111 11234678999999999976
No 159
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.65 E-value=3.7e-15 Score=148.46 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=97.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..++|+|+|..|+|||||+++|++..- .....+.+..+.....+...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-------------------------------SGSYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCcCccccceeEEEEEEECCE
Confidence 368999999999999999999983210 01111222333333344433
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-c-CCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVViNK~Dlv~~ 420 (666)
...+.||||||++.|.......+..+|++|+|+|++.... |. .....+..+.. . .+| +|||+||+|+...
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~----~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~ 125 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV----NVKRWLQEIEQNCDDVC-KVLVGNKNDDPER 125 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH----HHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 3568899999999998888888899999999999987521 11 12222232322 2 345 8999999998742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ...+...+.+.++ ++++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 126 KVV----ETEDAYKFAGQMG-----ISLFETSAKENINVEE 157 (199)
T ss_pred ccc----CHHHHHHHHHHcC-----CEEEEEECCCCcCHHH
Confidence 111 1122333333333 4789999999999976
No 160
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=3.8e-15 Score=143.11 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=96.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
..++|+++|+.|+|||||+++|+...- ......+++.+.....+...+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 54 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLF-------------------------------PPGQGATIGVDFMIKTVEIKGE 54 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCceeeEEEEEEEEECCE
Confidence 458999999999999999999984210 001112233344444444444
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 -~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
..+.||||||+..|.......+..+|++|+|+|++.+.. +..+ ......+..+...++| +|+|+||+|+....+
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~-~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~ 129 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FRCL-PEWLREIEQYANNKVI-TILVGNKIDLAERRE 129 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HHHH-HHHHHHHHHhCCCCCe-EEEEEECcccccccc
Confidence 557899999999998888888999999999999986421 1100 1111111222223566 799999999864221
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....+.+.+... . ..+++++||++|.|+.+
T Consensus 130 -i~~~~~~~~~~~---~-----~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 130 -VSQQRAEEFSDA---Q-----DMYYLETSAKESDNVEK 159 (169)
T ss_pred -cCHHHHHHHHHH---c-----CCeEEEeeCCCCCCHHH
Confidence 111222222221 1 24689999999999965
No 161
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=1.3e-15 Score=149.89 Aligned_cols=153 Identities=15% Similarity=0.067 Sum_probs=95.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+..+|+|+|+.|+|||||+++|...... . ...|+......+...+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~--------------------------------~--~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA--------------------------------Q--HVPTLHPTSEELTIGNI 63 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc--------------------------------c--cCCccCcceEEEEECCE
Confidence 4578999999999999999999842110 0 00122222234455678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.+|||||+.++......++..+|++|+|+|+.+.. .+........+.+......+.| +|+|+||+|+... ..
T Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~--~~ 137 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---RFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA--VS 137 (190)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---HHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC--cC
Confidence 8999999999998877778889999999999998641 1110001111111111223566 9999999998641 11
Q ss_pred hhHHHHHHhhhhhhcCc-----------CCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGF-----------KDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~-----------~~~~i~iIpvSA~tG~nI~e 461 (666)
.+.+. ..+....+ ....+.++++||++|+|+.+
T Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 138 EEELR----QALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred HHHHH----HHhCcccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 22232 22221111 01234689999999999976
No 162
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.65 E-value=3.8e-15 Score=146.98 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
++|+|+|++++|||||+++|++..... .+..+.+........+...+ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV------------------------------GPYQNTIGAAFVAKRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC------------------------------cCcccceeeEEEEEEEEECCEEE
Confidence 479999999999999999998431100 00111111122222233333 4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+.+|.......+..+|++|+|+|++.... + ......+..+... ++| +|+|+||+|+.....
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~----~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~ 122 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---F----ERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDR 122 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---H----HHHHHHHHHHHhcCCCCC-EEEEEEccccccccc
Confidence 56799999998887777777889999999999976421 1 1112233333333 566 999999999864321
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
........++..+....+ ++++++||++|.|+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 123 SLRQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDE 156 (193)
T ss_pred ccCccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111111123344443333 4689999999999966
No 163
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=7.9e-16 Score=144.03 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=83.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|++|+|||||+++|++... . ...|+.. +... .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----------------------~-------------~~~t~~~-----~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----------------------L-------------YKKTQAV-----EYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----------------------c-------------cccceeE-----EEcC---e
Confidence 699999999999999999983210 0 0012211 1111 6
Q ss_pred EEeCCCcc----chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 348 VLDSPGHK----DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 348 liDTPGh~----~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
+|||||+. .+...+...++.+|++|+|+|++.+... +..+. ...++.| +|+|+||+|+.+. ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~--------~~~~~---~~~~~~p-~ilv~NK~Dl~~~-~~ 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESR--------FPPGF---ASIFVKP-VIGLVTKIDLAEA-DV 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcC--------CChhH---HHhccCC-eEEEEEeeccCCc-cc
Confidence 89999972 4455555568899999999999876421 11111 2223445 8999999998742 11
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .+++..+++..++ .+++++||++|.|+.+
T Consensus 106 ~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 106 D----IERAKELLETAGA----EPIFEISSVDEQGLEA 135 (142)
T ss_pred C----HHHHHHHHHHcCC----CcEEEEecCCCCCHHH
Confidence 1 1223333433332 3689999999999965
No 164
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=2.2e-15 Score=149.00 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=94.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE--EEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~--~~~~~~~~ 344 (666)
++|+|+|.+|+|||||+++|+....... +....+..+... ..+.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG------------------------------NFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc------------------------------CcCCcccceeEEEEEEECCEEE
Confidence 4799999999999999999984311100 111122222222 22333346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|.......+..+|++|+|+|++.... ++ .....+..+..+ ++| +|+|+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~----~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~ 122 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---FD----NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGER 122 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhCCCCCc-EEEEEEcccchhcc
Confidence 78899999999998888888899999999999987421 11 122223333332 456 99999999986421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ..+...+.+.++ ++++++||++|.|+.+
T Consensus 123 ~~~----~~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 123 VVK----REDGERLAKEYG-----VPFMETSAKTGLNVEL 153 (191)
T ss_pred ccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111 122333333333 4789999999999976
No 165
>PTZ00369 Ras-like protein; Provisional
Probab=99.64 E-value=2e-15 Score=148.95 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=94.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhccccccccccc--CeEEEEEEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER--GITMTVAVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~--GiTid~~~~~~~~ 341 (666)
+..++|+|+|+.|+|||||+++|++.... .+..+ +.+. .....++.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~-------------------------------~~~~~t~~~~~-~~~~~~~~ 50 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFI-------------------------------DEYDPTIEDSY-RKQCVIDE 50 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------cCcCCchhhEE-EEEEEECC
Confidence 34689999999999999999999843110 00001 1111 11122333
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
....+.||||||+.+|...+..++..+|++|+|+|++.... |+.+.....+.......-++| +|+|+||+|+....
T Consensus 51 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FEEIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 44567899999999999988888999999999999987532 111111111111111112566 99999999986421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .. ..+...+.+.++ ++++++||++|.|+.+
T Consensus 127 ~--i~--~~~~~~~~~~~~-----~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 127 Q--VS--TGEGQELAKSFG-----IPFLETSAKQRVNVDE 157 (189)
T ss_pred c--cC--HHHHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 1 11 112222333333 4789999999999976
No 166
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.64 E-value=3e-15 Score=149.27 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=87.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
++|+|+|.+|+|||||+++|++..- ..+..+.++.+.....+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-------------------------------~~~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-------------------------------PEEYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-------------------------------CcccCCccccccceeEEEECCEEE
Confidence 4799999999999999999984210 111122222222212222333 6
Q ss_pred EEEEEeCCCccchH--------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH------HcCCCcEEE
Q 005973 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR------SFGVDQLIV 410 (666)
Q Consensus 345 ~i~liDTPGh~~f~--------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~------~lgip~iIV 410 (666)
.+.||||||+.+|. ......+..+|++|+|+|++.+.. |+ .....+..+. ..++| +|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~----~~~~~~~~i~~~~~~~~~~~p-iii 121 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH----YVKLLRQQILETRPAGNKEPP-IVV 121 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcccCCCCCC-EEE
Confidence 78899999976541 113345688999999999987521 11 1111122121 13466 999
Q ss_pred EEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+||+|+....... .+++..+.++. ..++++++||++|.|+.+
T Consensus 122 vgNK~Dl~~~~~~~----~~~~~~~~~~~----~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 122 VGNKRDQQRHRFAP----RHVLSVLVRKS----WKCGYLECSAKYNWHILL 164 (198)
T ss_pred EEECcccccccccc----HHHHHHHHHHh----cCCcEEEecCCCCCCHHH
Confidence 99999996421111 11222222211 135789999999999976
No 167
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=4.6e-15 Score=142.69 Aligned_cols=148 Identities=16% Similarity=0.098 Sum_probs=92.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|.+|+|||||+++|+...- .... ...-+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f--~~~~---------------------------~~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RESY---------------------------IPTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCCc---------------------------CCcchheE-EEEEEECCEEEEE
Confidence 6899999999999999999984310 0000 00000011 1111223344678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEeccccccc
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVViNK~Dlv~~ 420 (666)
.||||||+.+|......++..+|++|+|+|.+..... ......+..++. .++| +|+|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~-------~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSL-------EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHK 123 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHH-------HHHHHHHHHHHHHhcCCCCCCC-EEEEEECcccccc
Confidence 8999999999988777788899999999999875311 122233333333 3466 9999999999642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+ . ...+...+.... .++++++||++|+|+.+
T Consensus 124 ~~--v--~~~~~~~~~~~~-----~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 124 RE--V--SSNEGAACATEW-----NCAFMETSAKTNHNVQE 155 (165)
T ss_pred Ce--e--cHHHHHHHHHHh-----CCcEEEeecCCCCCHHH
Confidence 11 1 111122222222 24689999999999976
No 168
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.64 E-value=3.5e-15 Score=140.26 Aligned_cols=146 Identities=20% Similarity=0.189 Sum_probs=93.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEE
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~l 348 (666)
|+|+|+.|+|||||+++|.+.... .+..+.+..+ ...+......+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~t~~~~--~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-------------------------------EDTIPTVGFN--MRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-------------------------------cCccCCCCcc--eEEEEECCEEEEE
Confidence 899999999999999999843110 0111222222 2233445678999
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-H---HcCCCcEEEEEeccccccccchh
Q 005973 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-R---SFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 349 iDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~---~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
|||||+..|...+...+..+|++|+|+|++.... ..+..+.+..+ . ..++| +++|+||+|+.+. ..
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~--~~ 118 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA-------LEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA--LS 118 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH-------HHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC--cC
Confidence 9999999999888888999999999999986310 01222222222 1 24667 8999999998743 22
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+...+.. . ......++++++||++|.|+.+
T Consensus 119 ~~~~~~~~~~--~--~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 119 VDELIEQMNL--K--SITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred HHHHHHHhCc--c--cccCCceEEEEEEeccCCChHH
Confidence 2222222210 1 1112346789999999999965
No 169
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=3.9e-15 Score=143.40 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+|+|+.|+|||||+++|+...-. . ... ......++. ..+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~-------------------------~~~-~~~~~~~~~---~~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--E-------------------------NVP-RVLPEITIP---ADVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--c-------------------------cCC-CcccceEee---eeecCCeEEE
Confidence 37999999999999999999843110 0 000 000111211 1223356789
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccchh
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.||||||+..+...+...+..+|++|||+|++.+.. + .......+..++. .++| +|+|+||+|+.+.....
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~ 122 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---L---ERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA 122 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh
Confidence 999999999888777778899999999999987521 1 1100112233332 2566 99999999997532210
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....++..+.+.+.- ..+++++||++|.|+.+
T Consensus 123 --~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 123 --GLEEEMLPIMNEFRE---IETCVECSAKTLINVSE 154 (166)
T ss_pred --HHHHHHHHHHHHHhc---ccEEEEeccccccCHHH
Confidence 122223222222210 12689999999999966
No 170
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=2.2e-15 Score=177.21 Aligned_cols=145 Identities=23% Similarity=0.307 Sum_probs=108.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+ .+..+|+|.+.....+++.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~~pGvT~d~~~~~~~~~~~ 323 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VEDTPGVTRDRVSYDAEWAGT 323 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCeeEEEEEEEEEECCE
Confidence 45789999999999999999999542221 123478999888888888889
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+.. +...+..++..+|++|+|+|++.+ +.....+.+.+++..+.| +|+|+||+|
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~p-vIlV~NK~D 394 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKP-VVLAVNKID 394 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 999999999653 455566778899999999999876 234555667778888888 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.... . ....+ ..+++. ..+++||++|.|+.+
T Consensus 395 ~~~~~-~-------~~~~~-~~lg~~----~~~~iSA~~g~GI~e 426 (712)
T PRK09518 395 DQASE-Y-------DAAEF-WKLGLG----EPYPISAMHGRGVGD 426 (712)
T ss_pred cccch-h-------hHHHH-HHcCCC----CeEEEECCCCCCchH
Confidence 86321 1 11111 123442 247999999999966
No 171
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.4e-15 Score=164.60 Aligned_cols=144 Identities=22% Similarity=0.216 Sum_probs=107.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
..-++|+|+|.||+|||||+|+|++...+|..+. +|+|.|+....+..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------------------------------~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------------------------------AGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCC------------------------------CCCccceEEEEEEECC
Confidence 4568999999999999999999998766665543 7999999999999999
Q ss_pred eEEEEEeCCCccc---h-----HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 344 YHVVVLDSPGHKD---F-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 344 ~~i~liDTPGh~~---f-----~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
+.+.|+||+|..+ . +......+..||++++|+|++.+. ..+....+. +...+.| +++|+||+
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~--------~~~d~~~~~-~~~~~~~-~i~v~NK~ 334 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPL--------DKEDLALIE-LLPKKKP-IIVVLNKA 334 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------chhhHHHHH-hcccCCC-EEEEEech
Confidence 9999999999543 2 233355678899999999999852 223334433 2333455 89999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+....... .+ +. . ...+++.+||++|+|+..
T Consensus 335 DL~~~~~~~------~~-~~------~-~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 335 DLVSKIELE------SE-KL------A-NGDAIISISAKTGEGLDA 366 (454)
T ss_pred hcccccccc------hh-hc------c-CCCceEEEEecCccCHHH
Confidence 998532210 01 11 1 223689999999999966
No 172
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=4.2e-15 Score=149.34 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=96.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|+.|+|||||+++|++... . ......|.+.......+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~--~----------------------------~~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--E----------------------------DLAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC--C----------------------------CcCCCceeEEEEEEEEECCEE
Confidence 3468999999999999999999984311 0 001112222222223333344
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHHHH----cCCCcEEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS----FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~----lgip~iIVViNK~Dlv 418 (666)
..+.||||||+++|......+++.+|++|||+|++.... |. ...+.+ ..+.. .++| +|+|+||+|+.
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~----~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 133 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT----NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRE 133 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 678999999999998888888999999999999987521 11 111111 11221 2455 89999999987
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... .++...+....+ ++++++||++|.|+.+
T Consensus 134 ~~~~i~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 134 SERDVS----REEGMALAKEHG-----CLFLECSAKTRENVEQ 167 (211)
T ss_pred ccCccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 422111 122223333322 4689999999999976
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.64 E-value=5.4e-15 Score=145.88 Aligned_cols=149 Identities=18% Similarity=0.229 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++.... .......|.|..+....+ +.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~---~~ 70 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNL-----------------------------ARTSKTPGRTQLINFFEV---ND 70 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCc-----------------------------ccccCCCCceeEEEEEec---CC
Confidence 4688999999999999999999943100 011122455655544332 36
Q ss_pred EEEEEeCCCcc----------chHHHHHHhc---ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEE
Q 005973 345 HVVVLDSPGHK----------DFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (666)
Q Consensus 345 ~i~liDTPGh~----------~f~~~~~~~~---~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 411 (666)
.+.||||||+. ++......++ ..++++++|+|+..+. .....+.+.++...++| ++++
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL--------KELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC--------CHHHHHHHHHHHHcCCc-EEEE
Confidence 89999999952 3333333333 3457899999987652 22334455666778888 8999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+||+|+.. ....+.+...+...+... ..+++++||++|.|+.+
T Consensus 142 ~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 142 LTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred EECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHH
Confidence 99999974 233334444555555332 35789999999999965
No 174
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=2.1e-15 Score=161.54 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=97.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+....|+|||.+|||||||+++|+.....+. ..+++|+.+....+...+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------------~y~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------------CCCCCccCCEEEEEEeCC
Confidence 3456799999999999999999985422211 113456655555566555
Q ss_pred -eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEec
Q 005973 344 -YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNK 414 (666)
Q Consensus 344 -~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK 414 (666)
..++|+||||+.+ +...+++.+..+|++|+|||++.......++.+.....+...+... .+.| +|||+||
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK 282 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNK 282 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeC
Confidence 8899999999642 4455667778899999999998641111111111111111111111 2455 8999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+... ...+.+.+++. +.++ .+++++||++++|+.+
T Consensus 283 ~DL~~~--~~~~~~~~~l~---~~~~-----~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 283 IDLLDE--EELAELLKELK---KALG-----KPVFPISALTGEGLDE 319 (329)
T ss_pred ccCCCh--HHHHHHHHHHH---HHcC-----CcEEEEEccCCcCHHH
Confidence 999742 22222333222 2222 4689999999999966
No 175
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.64 E-value=3.1e-15 Score=145.97 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--Ce
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~~ 344 (666)
++|+|+|..++|||||+.+|++.. ...+..+.+..... ..+..+ ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-------------------------------f~~~~~pt~~~~~~-~~~~~~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-------------------------------FPSEYVPTVFDNYA-VTVMIGGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-------------------------------CCCCCCCceeeeeE-EEEEECCEEE
Confidence 689999999999999999998421 01111122211111 122333 36
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+++|......+++.+|++|||+|.+.... |+.+. ...+..++. -++| +|+|.||+|+.+..+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~~~~---~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~ 122 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FENVK---EKWVPEITHHCPKTP-FLLVGTQIDLRDDPS 122 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HHHHH---HHHHHHHHHhCCCCC-EEEEEECHhhhhChh
Confidence 78899999999998777778889999999999987531 11111 112222222 2456 999999999864211
Q ss_pred hhhhH---------HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~---------i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+. ..++...+.+..+ ...++++||++|.|+.+
T Consensus 123 -~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 123 -TIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKN 165 (175)
T ss_pred -hHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHH
Confidence 1100 1122223333322 25789999999999976
No 176
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=3e-15 Score=160.57 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-C
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~ 342 (666)
+....|+|||.+|||||||+++|+.....+. ..+++|+.+....+.. .
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va-------------------------------~ypfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccC-------------------------------CCCCceeCceEEEEEeCC
Confidence 3456799999999999999999995422221 1245677777777766 5
Q ss_pred CeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEE
Q 005973 343 NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIV 410 (666)
Q Consensus 343 ~~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIV 410 (666)
...|+|+||||..+ +...+++.+..++++|+|||++.... ++ +.......+.. .+.| +|+
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~e----~~~~~~~EL~~~~~~L~~kp-~II 276 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---VE----DYKTIRNELEKYSPELADKP-RIL 276 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---HH----HHHHHHHHHHHhhhhcccCC-eEE
Confidence 67899999999642 45566778888999999999986421 11 11122222222 2556 899
Q ss_pred EEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+||+|+.+... .. ...+..+++.. ..+++++||++++|+.+
T Consensus 277 V~NKiDL~~~~~-~~---~~~~~~~~~~~-----~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 277 VLNKIDLLDEEE-ER---EKRAALELAAL-----GGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEECcccCCchh-HH---HHHHHHHHHhc-----CCCEEEEEcCCCCCHHH
Confidence 999999974211 11 11222222222 24789999999999976
No 177
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.63 E-value=3.4e-15 Score=144.23 Aligned_cols=154 Identities=20% Similarity=0.197 Sum_probs=96.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+|+.|+|||||+++|.+.... ......|.+ ...+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~------------------------------~~~~t~g~~----~~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS------------------------------HITPTQGFN----IKTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc------------------------------ccCCCCCcc----eEEEEECC
Confidence 34688999999999999999999842110 001112222 22344457
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.+|||||+..+...+...+..+|++++|+|+.... .+..........+......++| +++++||+|+... .
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--~ 131 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---RLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA--A 131 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC--C
Confidence 88999999999888877777888999999999998631 0100001111111222334677 9999999998742 2
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+.+.+.+. ...+....++++++||++|+|+.+
T Consensus 132 ~~~~i~~~l~----~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 132 PAEEIAEALN----LHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred CHHHHHHHcC----CcccCCCeEEEEEeECCCCCCHHH
Confidence 2222322221 112222234678999999999966
No 178
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=4.7e-15 Score=145.46 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE-EEEe-cCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV-AYFD-SKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~-~~~~-~~~~ 344 (666)
++|+|+|..|+|||||+++|++..- .....+.+..+... .... ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~i~~~~~~~~ 49 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-------------------------------PEEYVPTVFENYVTNIQGPNGKII 49 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-------------------------------CCCCCCeeeeeeEEEEEecCCcEE
Confidence 4799999999999999999984210 01111111112111 1111 2345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+++|.......+..+|++|+|+|+++... |+. .....+..+.. .++| +|+|+||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 122 (187)
T cd04132 50 ELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LDN---VEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKN 122 (187)
T ss_pred EEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HHH---HHHHHHHHHHHhCCCCC-EEEEEeChhhhhCcc
Confidence 68899999999998887778899999999999987421 111 11111111221 2566 999999999874221
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
........+...+...++. .+++++||++|.|+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 123 LDRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEE 157 (187)
T ss_pred ccCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHH
Confidence 1111112334444444442 2689999999999976
No 179
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.63 E-value=2.8e-15 Score=143.35 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCe-EEEEEEEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~Gi-Tid~~~~~~~~~~~~ 345 (666)
++|+++|.+|+|||||+++++... ... +..+.+ ........+......
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT--FIE-----------------------------KYDPTIEDFYRKEIEVDSSPSV 50 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCchhheEEEEEEECCEEEE
Confidence 689999999999999999998421 100 000100 011111222222345
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~~ 421 (666)
+.||||||+++|...+..++..+|++|+|+|.++... +. ...+.+..+.. .++| +++|+||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~ 122 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---FQ----DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESER 122 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCC-EEEEEECccchhcC
Confidence 7799999999998888888899999999999987521 11 11222222222 3567 99999999986421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .+...+.+.++ ++++++||++|.|+.+
T Consensus 123 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 123 EVSS----AEGRALAEEWG-----CPFMETSAKSKTMVNE 153 (163)
T ss_pred ccCH----HHHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 1111 11222222222 4789999999999966
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=5.8e-15 Score=142.79 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=92.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~ 343 (666)
.++|+++|++|+|||||+++|+... ...+....+..+.....+.. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR-------------------------------FPERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeEEEEEEEEEECCeE
Confidence 4789999999999999999998321 11111222333333333333 34
Q ss_pred eEEEEEeCCCccchHH-HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~-~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv 418 (666)
..+.||||||+.+|.. .....+..+|++|+|+|++.+... ......+..+.. -++| +|+|+||+|+.
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 122 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASF-------HSLPSWIEECEQHSLPNEVP-RILVGNKCDLR 122 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHH-------HhHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 6788999999998874 355567889999999999875321 111222222322 2466 99999999986
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc---CCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t---G~nI~e 461 (666)
...... . .+...+.+.. .++++++||++ +.|+.+
T Consensus 123 ~~~~~~-~---~~~~~~~~~~-----~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 123 EQIQVP-T---DLAQRFADAH-----SMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred hhcCCC-H---HHHHHHHHHc-----CCcEEEEeccCCcCCCCHHH
Confidence 421111 1 1222222222 25789999999 666644
No 181
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.63 E-value=1.3e-15 Score=130.68 Aligned_cols=83 Identities=41% Similarity=0.682 Sum_probs=79.0
Q ss_pred CceeeEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCcccccc
Q 005973 494 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (666)
Q Consensus 494 p~~~~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~ 573 (666)
||+|+|+++|+.+.|++ ++|+|++|+|++||+|.++|++..++|++|++++.++++|.|||+|+|.|++++..++++|+
T Consensus 1 p~r~~V~~v~~~~~g~v-v~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~ 79 (83)
T cd03698 1 PFRLPISDKYKDQGGTV-VSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGD 79 (83)
T ss_pred CeEEEEEeEEEcCCCcE-EEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCC
Confidence 79999999998777877 89999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEec
Q 005973 574 VLCH 577 (666)
Q Consensus 574 VL~~ 577 (666)
+||+
T Consensus 80 vl~~ 83 (83)
T cd03698 80 VLCS 83 (83)
T ss_pred EEeC
Confidence 9984
No 182
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.63 E-value=1.4e-15 Score=146.21 Aligned_cols=131 Identities=23% Similarity=0.270 Sum_probs=86.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|++|+|||||+++|.+... + . ..|..+ .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-------------------------------~---~~~~~v---~~~~~----~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-------------------------------A---RKTQAV---EFNDK----G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-------------------------------C---ccceEE---EECCC----C
Confidence 699999999999999999873210 0 0 011111 11111 2
Q ss_pred EEeCCCc----cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 348 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 348 liDTPGh----~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
+|||||. .++...++.++..+|++|+|+|++.+... +..+.+.+ ..+.| +++++||+|+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~--------~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~-- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR--------LPAGLLDI--GVSKR-QIAVISKTDMPDAD-- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc--------cCHHHHhc--cCCCC-eEEEEEccccCccc--
Confidence 6999995 46777777888999999999999876311 11122221 23556 89999999986422
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+..+++..++ ..|++++||++|+|+.+
T Consensus 108 -~----~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 108 -V----AATRKLLLETGF---EEPIFELNSHDPQSVQQ 137 (158)
T ss_pred -H----HHHHHHHHHcCC---CCCEEEEECCCccCHHH
Confidence 1 223344445554 25899999999999966
No 183
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=3.6e-15 Score=175.16 Aligned_cols=145 Identities=22% Similarity=0.298 Sum_probs=104.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|++|+|||||+|+|++.... ....+|+|++.....+...+.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------------------------vgn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR-------------------------------VGNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCceEeeEEEEEEcCce
Confidence 4578999999999999999999843211 112378999988888888999
Q ss_pred EEEEEeCCCccchHHH--------H--HHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 345 HVVVLDSPGHKDFVPN--------M--ISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~--------~--~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
.+.|+||||+.++... . ..+ ...+|++|+|+|+++.. ........+..+++| +|+|+
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le----------r~l~l~~ql~e~giP-vIvVl 119 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE----------RNLYLTLQLLELGIP-CIVAL 119 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch----------hhHHHHHHHHHcCCC-EEEEE
Confidence 9999999998776421 1 112 24699999999998742 223344556778999 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+.+. ..+. ..+..+.+.++ ++++++||++|+|+++
T Consensus 120 NK~Dl~~~--~~i~---id~~~L~~~LG-----~pVvpiSA~~g~GIde 158 (772)
T PRK09554 120 NMLDIAEK--QNIR---IDIDALSARLG-----CPVIPLVSTRGRGIEA 158 (772)
T ss_pred Echhhhhc--cCcH---HHHHHHHHHhC-----CCEEEEEeecCCCHHH
Confidence 99998732 1222 22233333344 4789999999999966
No 184
>PLN03110 Rab GTPase; Provisional
Probab=99.63 E-value=1.2e-14 Score=146.84 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=97.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
...++|+|+|+.++|||||+++|++... ..+..+.+..+.....+...
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~-------------------------------~~~~~~t~g~~~~~~~v~~~~ 58 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEF-------------------------------CLESKSTIGVEFATRTLQVEG 58 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCceeEEEEEEEEEECC
Confidence 3468999999999999999999984211 11112333344433444433
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 005973 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 -~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv 418 (666)
...+.||||||+.+|.......++.++++|+|+|.+.... |+ .....+..++. .++| +|+|+||+|+.
T Consensus 59 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~----~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~ 130 (216)
T PLN03110 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD----NVQRWLRELRDHADSNIV-IMMAGNKSDLN 130 (216)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---HH----HHHHHHHHHHHhCCCCCe-EEEEEEChhcc
Confidence 3578899999999998888888899999999999986421 11 11222233333 3566 99999999986
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... . ++...+.... .++++++||++|.|+.+
T Consensus 131 ~~~~~~-~---~~~~~l~~~~-----~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 131 HLRSVA-E---EDGQALAEKE-----GLSFLETSALEATNVEK 164 (216)
T ss_pred cccCCC-H---HHHHHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 421111 1 1122222222 35799999999999976
No 185
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=3e-15 Score=145.61 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=93.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~~ 344 (666)
.++|+|+|..|+|||||+.+|+...- ..+..+.+.... ....+.....
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSF-------------------------------PDYHDPTIEDAYKQQARIDNEPA 50 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-------------------------------CCCcCCcccceEEEEEEECCEEE
Confidence 36899999999999999999984211 000111111011 1112223345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~ 420 (666)
.+.||||||+.+|...+..++..+|++|+|+|.++... |. ...+.+..+.. .++| +|+|+||+|+...
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~----~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~ 122 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ----EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH----HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhc
Confidence 68899999999998888888999999999999987532 11 11122222222 3566 9999999998642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .. ...+...+.+..+ ++++++||++|.|+.+
T Consensus 123 ~--~v--~~~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 123 R--QV--TTEEGRNLAREFN-----CPFFETSAALRHYIDD 154 (172)
T ss_pred C--cc--CHHHHHHHHHHhC-----CEEEEEecCCCCCHHH
Confidence 1 11 1122233333333 4789999999999976
No 186
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=4.1e-15 Score=146.29 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|.+|+|||||+++|.+..-.. ..+ |.......+...+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--------------------------------~~~--t~~~~~~~~~~~~~ 61 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--------------------------------HQP--TQHPTSEELAIGNI 61 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc--------------------------------cCC--ccccceEEEEECCE
Confidence 45889999999999999999998431100 001 12222233445678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHH---HHcCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLI---RSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll---~~lgip~iIVViNK~Dlv~~ 420 (666)
.+.++||||+..+...+..++..+|++|+|+|+++.. .+ ....+.+ .++ ...++| +|+|+||+|+...
T Consensus 62 ~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~---~~----~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 62 KFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE---RF----AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH---HH----HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 8999999999998888888899999999999998642 01 1122222 222 124666 9999999998632
Q ss_pred cchhhhHHHHHHhhhhhhc---CcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~---~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.+.-.-... ........++++||++|+|+.+
T Consensus 134 --~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 134 --ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred --CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHH
Confidence 11223333332110000 0011245689999999999976
No 187
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=4.5e-15 Score=141.23 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=93.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE--EEEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--AVAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~--~~~~~~~~~~ 344 (666)
++|+++|.+|+|||||+++|++..-. . .. .+.+.+. ....+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~-----------------------------~~-~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--E-----------------------------DY-EPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--c-----------------------------cc-CCcchhhEEEEEEECCEEE
Confidence 47999999999999999999943110 0 00 0111111 1112233446
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+.++.......++.+|++++|+|...+. .+..+.......+......++| +|+|+||+|+.......
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~ 124 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS 124 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC
Confidence 7889999999999988888899999999999987642 1111111111111111124677 99999999997521111
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .+...+.+.++ ++++++||++|+|+.+
T Consensus 125 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 125 S----EEAANLARQWG-----VPYVETSAKTRQNVEK 152 (164)
T ss_pred H----HHHHHHHHHhC-----CeEEEeeCCCCCCHHH
Confidence 1 12222333333 4789999999999976
No 188
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=5.2e-15 Score=145.42 Aligned_cols=150 Identities=18% Similarity=0.203 Sum_probs=94.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|+.++|||||+++|... ... . ..+ |+......++..+.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~--~~~-------------------------~-----~~~--T~~~~~~~~~~~~~ 61 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG--EVV-------------------------T-----TIP--TIGFNVETVEYKNL 61 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------------c-----cCC--ccccceEEEEECCE
Confidence 3578999999999999999999621 000 0 011 11111223445678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.++...+...+..+|++|+|+|++... .+ .....++..++.. ..+| +|||+||+|+.+..
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 134 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---RI---GDAREELERMLSEDELRDAV-LLVFANKQDLPNAM 134 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCC
Confidence 8999999999999888888899999999999998632 11 1111122222222 2345 99999999986421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++...+. ...+....+.++++||++|.|+.+
T Consensus 135 --~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 135 --STTEVTEKLG----LHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred --CHHHHHHHhC----CCcccCCcEEEEeeeCCCCCCHHH
Confidence 1122222222 111222335677899999999976
No 189
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=3.3e-15 Score=148.61 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=90.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--eE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--YH 345 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~~ 345 (666)
+|+++|+.|+|||||+++|++..-. . + ...++.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~-----------------------------~-~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--P-----------------------------K-YRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c-----------------------------c-CCCchhhheeEEEEECCEEEE
Confidence 5899999999999999999843110 0 0 00111111122233333 57
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
+.||||||+.+|......++..+|++|+|+|++++. .+........+.+......++| +|+|+||+|+... ....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~-~~~v 123 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEE-ERQV 123 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEccccccc-cccc
Confidence 889999999998877777889999999999998742 1111111111112222224677 9999999998742 1111
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+...... .. ...+++++||++|.|+.+
T Consensus 124 ~--~~~~~~~~~-~~---~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 124 P--AKDALSTVE-LD---WNCGFVETSAKDNENVLE 153 (198)
T ss_pred c--HHHHHHHHH-hh---cCCcEEEecCCCCCCHHH
Confidence 1 111111111 11 124689999999999976
No 190
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3.6e-15 Score=166.08 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=101.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+....|+|||.+|||||||+++|+.....| ...+++|+.+....+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEECC
Confidence 345689999999999999999999542222 1235778888888888888
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCc-cccccccchhHHHHHHHHH----------HHcCC
Q 005973 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGS-FEVGMNTAKGLTREHAQLI----------RSFGV 405 (666)
Q Consensus 344 ~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~-~e~~~~~~~~qt~e~l~ll----------~~lgi 405 (666)
..|+|+||||..+ .....++.+..+|++|+|||++... ....+..+.....+...+. ...+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8999999999532 2344566778899999999997421 0011111111111222222 22356
Q ss_pred CcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 406 p~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
| +|||+||+|+.+. .. +.+.+...+...+ ++++++||++++|+.+
T Consensus 286 P-~IVVlNKiDL~da--~e---l~e~l~~~l~~~g-----~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 286 P-RLVVLNKIDVPDA--RE---LAEFVRPELEARG-----WPVFEVSAASREGLRE 330 (500)
T ss_pred C-EEEEEECccchhh--HH---HHHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 6 8999999999742 11 1222222333323 4789999999999976
No 191
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=2.8e-15 Score=144.79 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=91.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--cCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~~~~ 344 (666)
++|+++|..|+|||||+++|+... . .....+.+..+.....+. ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE--F-----------------------------EKKYVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 479999999999999999998321 0 001112222222222232 2346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH-Hc-CCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SF-GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~l-gip~iIVViNK~Dlv~~~~ 422 (666)
.+.+|||||+++|.......+..+|++|+|+|++.+... . .....+..+. .. ++| +|+|+||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~----~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~ 121 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTY---K----NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKV 121 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHH---H----HHHHHHHHHHHhCCCCc-EEEEEEchhcccccC
Confidence 788999999998876666677889999999999875311 1 1111222222 22 577 999999999973211
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .+...+.+. ...+++++||++|.|+.+
T Consensus 122 ~------~~~~~~~~~-----~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 122 K------AKQITFHRK-----KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred C------HHHHHHHHH-----cCCEEEEEeCCCCCChHH
Confidence 1 111122221 235789999999999976
No 192
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.63 E-value=2.4e-15 Score=167.71 Aligned_cols=139 Identities=22% Similarity=0.189 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------v~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI------------------------------VTDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcccccEEEEEEECCe
Confidence 45789999999999999999999532111 122367888888888888889
Q ss_pred EEEEEeCCCccchH--------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f~--------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+.++. ......+..+|++|+|+|++.+.. .+..+.+.. ..+.| +|+|+||+|
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s--------~~~~~~l~~--~~~~p-iiiV~NK~D 332 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT--------EEDDEILEE--LKDKP-VIVVLNKAD 332 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC--------hhHHHHHHh--cCCCC-cEEEEEhhh
Confidence 99999999986542 224456788999999999987631 122222221 34566 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+..... .. .. ...+++++||++|.|+.+
T Consensus 333 L~~~~~--~~----------~~-----~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 333 LTGEID--LE----------EE-----NGKPVIRISAKTGEGIDE 360 (449)
T ss_pred ccccch--hh----------hc-----cCCceEEEEeeCCCCHHH
Confidence 974211 00 11 124679999999999966
No 193
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=4.8e-15 Score=142.37 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=93.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE--EEEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--AVAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~--~~~~~~~~~~ 344 (666)
++|+++|+.|+|||||+++|++..-. .+..+. ..+. ....+.....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~-~~~~~~~~~~~~~~~~ 48 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-------------------------------TEYVPT-VFDNYSATVTVDGKQV 48 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCc-eeeeeEEEEEECCEEE
Confidence 57999999999999999999953210 000011 1111 1112223345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+.+|.......+..+|++++|+|+++... +.....+.+..+... ++| +|+|+||+|+.....
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS------FENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDEN 121 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchh
Confidence 78899999999886666666788999999999986421 111222233333322 466 999999999985322
Q ss_pred hhh-------hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRF-------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~-------~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .....+...++...++ .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 122 TLKKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKE 163 (171)
T ss_pred hhhhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHH
Confidence 100 0012233334444332 3789999999999966
No 194
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.62 E-value=6.3e-15 Score=140.92 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE--EEEEe-cCC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFD-SKN 343 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~--~~~~~-~~~ 343 (666)
++|+++|.+++|||||+++|...... ...+..+.+..+.. ...+. ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~~ 51 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAV-----------------------------FPKNYLMTTGCDFVVKEVPVDTDNT 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------cCccCCCceEEEEEEEEEEeCCCCE
Confidence 47999999999999999999832111 01111122222222 22222 244
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~ 421 (666)
..+.||||||+..|...+...+..+|++|+|+|.+..... ......+..+.. .++| +|+|+||+|+.+..
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 123 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASF-------ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKA 123 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 7888999999999888888888999999999999864211 111222222222 3566 89999999986432
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+ ... .+...+....+ .+++++||++|.|+.+
T Consensus 124 ~--~~~--~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 124 E--VTD--AQAQAFAQANQ-----LKFFKTSALRGVGYEE 154 (164)
T ss_pred C--CCH--HHHHHHHHHcC-----CeEEEEeCCCCCChHH
Confidence 1 111 11111222222 4689999999999966
No 195
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1.4e-14 Score=142.39 Aligned_cols=151 Identities=16% Similarity=0.183 Sum_probs=95.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--Ce
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~~ 344 (666)
++|+++|..++|||||+.+|+... ...+..+.+..+.....+..+ ..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-------------------------------f~~~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-------------------------------FDEDYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCCCCCCccceEEEEEEEEECCEEE
Confidence 479999999999999999998421 111122222223322333333 36
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccc-
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS- 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~- 421 (666)
.+.||||+|+.+|...+...++.+|++|+|+|+++... |+ ...+.+..++.. ... .|+|+||+|+....
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~----~i~~~~~~~~~~~~~~~-pilVgnK~Dl~~~~~ 121 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN----SIKEWYRQARGFNKTAI-PILVGTKYDLFADLP 121 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhCCCCC-EEEEEEchhcccccc
Confidence 68899999999998887788899999999999987532 11 112223333332 122 36789999996311
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
......+.++...+.+..+ .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 122 PEEQEEITKQARKYAKAMK-----APLIFCSTSHSINVQK 156 (182)
T ss_pred chhhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111123344444544443 4789999999999976
No 196
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.62 E-value=3.3e-15 Score=144.43 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--ecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~~~~~ 344 (666)
++|+++|++++|||||+++|++..- ..+..+. ..+.....+ .....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~-------------------------------~~~~~~t-~~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF-------------------------------PEEYVPT-VFDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCc-eeeeeEEEEEECCEEE
Confidence 4799999999999999999984311 0000111 111111122 22335
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH--HcCCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+.+|.......+..+|++|+|+|..... .|+. .....+..++ ..++| +|+|+||+|+.+...
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~~~---~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~ 121 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQN---VKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK 121 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh
Confidence 5789999999998777777788899999999998752 1111 1111122222 23566 899999999864321
Q ss_pred hhh--------hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRF--------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~--------~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .....+...+++.++. .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKT 164 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHH
Confidence 110 0112233344444443 3689999999999976
No 197
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.62 E-value=4e-15 Score=150.77 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=95.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+|+|..++|||||+++|+...- . +..+ |+...+.........+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f-------------------------------~-~~~~--Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF-------------------------------K-DTVS--TVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-------------------------------C-CCCC--ccceEEEEEEeeEEEE
Confidence 4799999999999999999984210 0 0011 2222222223355779
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc--
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK-- 422 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~-- 422 (666)
.||||||++.|......+++.+|++|+|+|++.... |..+ ..+...+... .++| +|+|.||+|+.....
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~~l---~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LEEL---EDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALA 119 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HHHH---HHHHHHHHHhcCCCCc-EEEEEECcccccccccc
Confidence 999999999998888888999999999999987521 1111 1111112221 2455 899999999974100
Q ss_pred -------------hhhhHHHHHHhhhhhhcCcC---------CCCCcEEEeecccCCCccc
Q 005973 423 -------------DRFDSIKVQLGTFLRSCGFK---------DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 -------------e~~~~i~~el~~~l~~~~~~---------~~~i~iIpvSA~tG~nI~e 461 (666)
.......++...+.++.+.. ...++|+++||++|.||.+
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~e 180 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDE 180 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHH
Confidence 01111223333444333210 0125789999999999977
No 198
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.62 E-value=5.2e-15 Score=146.47 Aligned_cols=154 Identities=13% Similarity=0.135 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEecCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~~~ 343 (666)
..++|+++|..++|||||+.+++... ...+..+.+..... ...++...
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~-------------------------------f~~~~~~t~~~~~~~~~~~~~~~ 50 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNA-------------------------------FPKEYIPTVFDNYSAQTAVDGRT 50 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCcCCCCceEeeeEEEEEECCEE
Confidence 45899999999999999999998321 01111121111111 11233334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH--HcCCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVViNK~Dlv~~~ 421 (666)
..+.||||||+++|......+++.+|++|+|+|.+... .|+.+... .+..+. .-++| +|+|.||+|+.+..
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~~~~---w~~~i~~~~~~~p-iilvgNK~DL~~~~ 123 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENVRHK---WHPEVCHHCPNVP-ILLVGTKKDLRNDA 123 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHHHHH---HHHHHHhhCCCCC-EEEEEeChhhhcCh
Confidence 67889999999999988888889999999999998753 12211111 111111 13566 99999999996421
Q ss_pred chhhhH---------HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~---------i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+. ..++...+.+..+ .++++++||++|+|+.+
T Consensus 124 ~-~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 124 D-TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKE 167 (191)
T ss_pred h-hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHH
Confidence 1 0111 1122233333333 24789999999999976
No 199
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=3.9e-15 Score=162.71 Aligned_cols=153 Identities=13% Similarity=0.108 Sum_probs=99.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
....|+|||.+|||||||+|+|+.....+ ...+++|+......+...+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~v-------------------------------s~~p~TT~~p~~Giv~~~~~ 206 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKV-------------------------------ADYPFTTLVPNLGVVRVDDE 206 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCCccCcEEEEEEeCCC
Confidence 34569999999999999999999543211 1235678777777777654
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEE
Q 005973 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVA 411 (666)
Q Consensus 344 ~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVV 411 (666)
..++|+||||..+ +...++..+..+|++|+|||++...... ...+....+..+.. .+.| +|+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d----~~e~~~~l~~eL~~~~~~L~~kP-~IlV 281 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSD----PVENARIIINELEKYSPKLAEKP-RWLV 281 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccC----hHHHHHHHHHHHHhhhhhhcCCC-EEEE
Confidence 4699999999643 4456677888999999999987210000 11222223333333 2456 8999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+||+|+.. ...+ .+.+..+.+.+++ ..+++++||+++.|+.+
T Consensus 282 lNKiDl~~--~~el---~~~l~~l~~~~~~---~~~Vi~ISA~tg~GIde 323 (390)
T PRK12298 282 FNKIDLLD--EEEA---EERAKAIVEALGW---EGPVYLISAASGLGVKE 323 (390)
T ss_pred EeCCccCC--hHHH---HHHHHHHHHHhCC---CCCEEEEECCCCcCHHH
Confidence 99999874 2222 2223333333332 13579999999999966
No 200
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=8e-15 Score=144.82 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=91.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEE-EEEEEEecCCeEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNYHV 346 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid-~~~~~~~~~~~~i 346 (666)
+|+|+|.+|+|||||+++|+... ... ...+.+... .....+......+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~l 49 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE-----------------------------TYDPTIEDSYRKQVVVDGQPCML 49 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc-----------------------------cCCCchHhhEEEEEEECCEEEEE
Confidence 48999999999999999998421 100 000100000 1111122223458
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEeccccccc
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVViNK~Dlv~~ 420 (666)
.||||||+++|......+++.+|++|+|+|.+..... + .....+..+.. .++| +|+|+||+|+...
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~---~----~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~ 121 (190)
T cd04144 50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTF---E----RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE 121 (190)
T ss_pred EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHH---H----HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc
Confidence 8999999999998888889999999999999875321 1 11222222221 2456 8999999999742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..-. ..+...+.+.++ ++++++||++|.|+.+
T Consensus 122 ~~v~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 122 REVS----TEEGAALARRLG-----CEFIEASAKTNVNVER 153 (190)
T ss_pred CccC----HHHHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 1111 112223333333 4689999999999976
No 201
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=6.5e-15 Score=142.77 Aligned_cols=152 Identities=16% Similarity=0.041 Sum_probs=92.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE--EEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~--~~~~~~ 341 (666)
++.++|+++|..|+|||||+++|+...-. ..+..+.+..+.. ...+..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~------------------------------~~~~~~T~~~~~~~~~~~~~~ 51 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS------------------------------LNAYSPTIKPRYAVNTVEVYG 51 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC------------------------------cccCCCccCcceEEEEEEECC
Confidence 35789999999999999999999842100 0111121111112 222233
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~Dlv~~ 420 (666)
....+.+||++|...+......++..+|++|+|+|++.... + ....+.+..+.. .++| +|+|+||+|+.+.
T Consensus 52 ~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~----~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~ 123 (169)
T cd01892 52 QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---F----SYCAEVYKKYFMLGEIP-CLFVAAKADLDEQ 123 (169)
T ss_pred eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---H----HHHHHHHHHhccCCCCe-EEEEEEccccccc
Confidence 33568899999999887777777899999999999976410 1 011122222211 2566 9999999998642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ...+...+.+.+++. .++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 124 QQR----YEVQPDEFCRKLGLP----PPLHFSSKLGDSSNE 156 (169)
T ss_pred ccc----cccCHHHHHHHcCCC----CCEEEEeccCccHHH
Confidence 111 011122333334431 348999999999966
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.61 E-value=8e-15 Score=141.41 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE--EecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~--~~~~~~ 344 (666)
++|+++|.+|+|||||+++|++.... . +..+. +.+..... +.....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~------------------------------~~~~t-~~~~~~~~~~~~~~~~ 49 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-E------------------------------SYDPT-IEDSYRKQVEIDGRQC 49 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-c------------------------------ccCCc-chheEEEEEEECCEEE
Confidence 57999999999999999999843210 0 00010 10111122 223335
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+.+|.......+..++++|+|+|.+.... ++.......+........++| +|+|+||+|+......
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~- 124 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV- 124 (168)
T ss_pred EEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc-
Confidence 77899999999999888888899999999999987521 111111112222222233677 8999999998642111
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..++...+.+.++ .++++++||++|.|+.+
T Consensus 125 ---~~~~~~~~~~~~~----~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 125 ---SREDGVSLSQQWG----NVPFYETSARKRTNVDE 154 (168)
T ss_pred ---CHHHHHHHHHHcC----CceEEEeeCCCCCCHHH
Confidence 1122223333332 25789999999999966
No 203
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=8.6e-15 Score=142.74 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=93.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEE-EEEEEEecCCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid-~~~~~~~~~~~ 344 (666)
+++|+|+|..|+|||||+.+++.. .. ..+..+.+... .....++....
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~--~f-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 49 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTN--AF-----------------------------PGEYIPTVFDNYSANVMVDGKPV 49 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcC--CC-----------------------------CCcCCCcceeeeEEEEEECCEEE
Confidence 368999999999999999999832 10 01111111000 01112233346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+.+|......++..+|++|+|+|.+... .|.. ....++..+.. -++| +|+|.||+|+.+. .
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~~---~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~-~ 121 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFEN---VRAKWYPEVRHHCPNTP-IILVGTKLDLRDD-K 121 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEeeChhhccC-h
Confidence 7889999999999887777889999999999998742 1111 11112222222 2456 9999999998642 1
Q ss_pred hhhhH---------HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~---------i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+. ..++...+.+.++ .++++++||++|+|+.+
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKT 165 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHH
Confidence 11111 1222333343333 24789999999999966
No 204
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=1.3e-14 Score=137.72 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=92.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--cCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~~~~ 344 (666)
++|+++|..|+|||||+++|++..... ...+.++.......+. ....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-------------------------------KHESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-------------------------------CcCCccceeEEEEEEEECCEEE
Confidence 479999999999999999999432110 0111222222222222 2335
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.+|||||+..+.......+..+|++|+|+|++++... ......+..+.. .++| +|+|+||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~ 121 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSF-------QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 688999999988887777778889999999999875311 111122222222 2456 99999999987422
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... +++..+.+..+ .+++++||++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 122 VVSK----SEAEEYAKSVG-----AKHFETSAKTGKGIEE 152 (162)
T ss_pred CCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 2111 22223333333 4679999999999966
No 205
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=6.4e-15 Score=148.31 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=95.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---C
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---K 342 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~---~ 342 (666)
.++|+|+|..|+|||||+++|+...-. ....+.++.+.....+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~-------------------------------~~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFA-------------------------------EVSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCceeceEEEEEEEEECCCC
Confidence 378999999999999999999842110 011122333333333332 2
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHHHc--CCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~l--gip~iIVViNK~Dlv~ 419 (666)
...+.||||||++.|.......+..+|++|+|+|.++... |+.+ .+.+. +.... ..+++|+|.||+|+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~~l----~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FEHV----HDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HHHH----HHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 3578899999999998888888899999999999987532 1111 11222 22222 1233789999999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ..++...+.+.++ ++++++||++|.|+.+
T Consensus 124 ~~~v----~~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e 156 (211)
T cd04111 124 QRQV----TREEAEKLAKDLG-----MKYIETSARTGDNVEE 156 (211)
T ss_pred cccc----CHHHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 2111 1122233333333 5789999999999977
No 206
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.60 E-value=2.1e-14 Score=148.03 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=91.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~~ 344 (666)
++|+++|..|+|||||+++|+...- ..+..+.+ .+.....+.. ..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-------------------------------~~~y~pTi-~d~~~k~~~i~~~~~ 48 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-------------------------------EEQYTPTI-EDFHRKLYSIRGEVY 48 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CCCCCCCh-hHhEEEEEEECCEEE
Confidence 3799999999999999999983210 00011111 1112222233 346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---------HcCCCcEEEEEecc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---------SFGVDQLIVAVNKM 415 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---------~lgip~iIVViNK~ 415 (666)
.+.||||+|+.+|......++..+|++|||+|++... .|+.+... .+.+...+ ..++| +|+|+||+
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~~i~~~-~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~ 123 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFEEVCRL-REQILETKSCLKNKTKENVKIP-MVICGNKA 123 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHH-HHHHHHhhcccccccccCCCCc-EEEEEECc
Confidence 7889999999988776666788999999999998752 12211111 11111111 12456 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+........ .++..++... ..+.++++||++|.|+.+
T Consensus 124 Dl~~~~~v~~----~ei~~~~~~~----~~~~~~evSAktg~gI~e 161 (247)
T cd04143 124 DRDFPREVQR----DEVEQLVGGD----ENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred cchhccccCH----HHHHHHHHhc----CCCEEEEEeCCCCCCHHH
Confidence 9974222222 2333333211 135789999999999976
No 207
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.60 E-value=3.5e-15 Score=127.62 Aligned_cols=82 Identities=38% Similarity=0.634 Sum_probs=78.3
Q ss_pred CceeeEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCcccccc
Q 005973 494 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (666)
Q Consensus 494 p~~~~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~ 573 (666)
||+|+|+++|+.. |++ ++|+|.+|+|++||+|+++|++..++|++|++++.++++|.|||+|+|.|++++..++++|+
T Consensus 1 plr~~I~~v~~~~-g~v-v~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~ 78 (82)
T cd04089 1 PLRLPIIDKYKDM-GTV-VLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGF 78 (82)
T ss_pred CeEEEEEeEEEcC-CEE-EEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCC
Confidence 7999999999875 888 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 005973 574 VLCH 577 (666)
Q Consensus 574 VL~~ 577 (666)
+||+
T Consensus 79 vl~~ 82 (82)
T cd04089 79 VLCS 82 (82)
T ss_pred EEeC
Confidence 9984
No 208
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.60 E-value=7.5e-15 Score=141.64 Aligned_cols=145 Identities=18% Similarity=0.175 Sum_probs=93.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEE
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~l 348 (666)
|+++|..|+|||||+++|+..... ....+ |+......+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-------------------------------~~~~p--t~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-------------------------------ESVVP--TTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-------------------------------ccccc--cCCcceEEEeeCCeEEEE
Confidence 899999999999999999843110 00001 111112334567788999
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHHHH-cCCCcEEEEEeccccccccchhhh
Q 005973 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS-FGVDQLIVAVNKMDAVQYSKDRFD 426 (666)
Q Consensus 349 iDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~-lgip~iIVViNK~Dlv~~~~e~~~ 426 (666)
|||||+.+|...+..++..+|++|+|+|++... .+ ...++.+ .++.. -++| +|+|+||+|+... ....
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~---s~----~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~--~~~~ 118 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE---RL----PLARQELHQLLQHPPDLP-LVVLANKQDLPAA--RSVQ 118 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HH----HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCC--CCHH
Confidence 999999999888888899999999999998742 11 1122222 22222 3566 9999999998642 2222
Q ss_pred HHHHHH--hhhhhhcCcCCCCCcEEEeeccc------CCCccc
Q 005973 427 SIKVQL--GTFLRSCGFKDASLTWIPLSALE------NQNLVT 461 (666)
Q Consensus 427 ~i~~el--~~~l~~~~~~~~~i~iIpvSA~t------G~nI~e 461 (666)
.+...+ ..+.++ ..+.++++||++ ++|+.+
T Consensus 119 ~i~~~~~~~~~~~~-----~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 119 EIHKELELEPIARG-----RRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHhCChhhcCC-----CceEEEEeeecCCCChhHHHHHHH
Confidence 232222 222222 245788999988 888855
No 209
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2e-14 Score=138.26 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=110.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE--EEEe
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFD 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~--~~~~ 340 (666)
..+..+|+++|..++|||+||.|+.+.. +.......|.+|... .+++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~-------------------------------fd~~YqATIGiDFlskt~~l~ 67 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLE 67 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhh-------------------------------hcccccceeeeEEEEEEEEEc
Confidence 3456899999999999999999999641 122223444444433 3445
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC--cEEEEEeccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAV 418 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip--~iIVViNK~Dlv 418 (666)
....++.||||+|+++|....-.+++.+.++|+|+|.++.. .+....++.-...+..|-. -|++|.||.||.
T Consensus 68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~------Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRN------SFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccc------hHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 56678899999999999999999999999999999998642 1222233333344444442 267888999999
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCC
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP 486 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~ 486 (666)
+. .++. .++-....+.++ +.|+.+||+.|+|+.+ |+..|....+
T Consensus 142 dk--rqvs--~eEg~~kAkel~-----a~f~etsak~g~NVk~---------------lFrrIaa~l~ 185 (221)
T KOG0094|consen 142 DK--RQVS--IEEGERKAKELN-----AEFIETSAKAGENVKQ---------------LFRRIAAALP 185 (221)
T ss_pred ch--hhhh--HHHHHHHHHHhC-----cEEEEecccCCCCHHH---------------HHHHHHHhcc
Confidence 53 3222 122223333333 4789999999999964 7777754433
No 210
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9.1e-15 Score=141.11 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=109.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+++|..|+|||.|+-|+.. +.+.+.....|.+|+..+.++..+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~-------------------------------~~f~e~~~sTIGVDf~~rt~e~~g 55 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD-------------------------------DTFTESYISTIGVDFKIRTVELDG 55 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc-------------------------------CCcchhhcceeeeEEEEEEeeecc
Confidence 3578999999999999999999972 334445556666777777776644
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
..+.||||+|+++|...+.++++.|+++|+|+|.+... .|+.+.....| +..-..-++| .++|.||+|+.+.-
T Consensus 56 k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~~v~~Wi~E-i~~~~~~~v~-~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFNNVKRWIQE-IDRYASENVP-KLLVGNKCDLTEKR 130 (205)
T ss_pred eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---HhhhHHHHHHH-hhhhccCCCC-eEEEeeccccHhhe
Confidence 56889999999999999999999999999999999753 34333222222 2222223566 79999999997421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCc-EEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLT-WIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~-iIpvSA~tG~nI~e 461 (666)
.- ...+...+...++ ++ ++++||+.+.|+++
T Consensus 131 ~v----~~~~a~~fa~~~~-----~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 131 VV----STEEAQEFADELG-----IPIFLETSAKDSTNVED 162 (205)
T ss_pred ec----CHHHHHHHHHhcC-----CcceeecccCCccCHHH
Confidence 11 1123344554444 34 89999999999976
No 211
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.59 E-value=1.9e-14 Score=138.19 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=94.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--e
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--~ 344 (666)
++|+++|..++|||||+.+|+... . ..+..+.+..+.....+...+ .
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE--F-----------------------------HSSHISTIGVDFKMKTIEVDGIKV 49 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC--C-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 479999999999999999998320 0 111122333333333444443 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|...+...+..+|++++|+|.+.... |+.+ ...+..+... ++| +++|.||+|+....
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~~~----~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~ 121 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQHI----MKWVSDVDEYAPEGVQ-KILIGNKADEEQKR 121 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HHHH----HHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 67899999999998888888899999999999987421 2111 1122222222 355 89999999986421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. . ..++...+.+.++ .+++++||++|.|+.+
T Consensus 122 ~--v--~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 122 Q--V--GDEQGNKLAKEYG-----MDFFETSACTNSNIKE 152 (161)
T ss_pred C--C--CHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1 1 0122223333333 4689999999999976
No 212
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.1e-14 Score=160.36 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-C
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-N 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-~ 343 (666)
....|+|+|.+|||||||+++|+.....|. ..+++|+.+....+... +
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~~ 205 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDDG 205 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeCC
Confidence 345799999999999999999995432221 12466777777766665 7
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEE
Q 005973 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVA 411 (666)
Q Consensus 344 ~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVV 411 (666)
..++|+||||... +....++.+..++++|+|||++...... ...........+.. .+.| +|||
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~d----p~e~~~~i~~EL~~y~~~L~~kP-~IVV 280 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRD----PIEDYEKINKELKLYNPRLLERP-QIVV 280 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCC----hHHHHHHHHHHHhhhchhccCCc-EEEE
Confidence 8899999999642 3455666778899999999997431111 11122222222322 3566 8999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+||+|+.. ..+. +..+.+.++ .+++++||++++|+.+
T Consensus 281 ~NK~DL~~-~~e~-------l~~l~~~l~-----~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 281 ANKMDLPE-AEEN-------LEEFKEKLG-----PKVFPISALTGQGLDE 317 (424)
T ss_pred EeCCCCcC-CHHH-------HHHHHHHhC-----CcEEEEeCCCCCCHHH
Confidence 99999842 1111 222222222 3689999999999976
No 213
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=1.3e-14 Score=146.98 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=95.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhccccccccccc--CeEEEEEEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER--GITMTVAVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~--GiTid~~~~~~~~ 341 (666)
+..++|+++|..|+|||||+++++... ...+..+ |+++.........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~-------------------------------f~~~~~~tig~~~~~~~~~~~~ 59 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-------------------------------FEKKYEPTIGVEVHPLDFFTNC 59 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC-------------------------------CCCccCCccceeEEEEEEEECC
Confidence 567899999999999999999987321 0111112 2232222222233
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH--HcCCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVViNK~Dlv~ 419 (666)
....+.||||||+++|......+++.+|++|+|+|.+.... +.. ....+..+. ..++| +|+|+||+|+..
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~~----i~~w~~~i~~~~~~~p-iilvgNK~Dl~~ 131 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKN----VPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HHH----HHHHHHHHHHhCCCCc-EEEEEEchhhhh
Confidence 45688899999999998877778899999999999987532 111 111222222 13566 999999999863
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... . .+++ .+.+.. .++++++||++|.|+.+
T Consensus 132 ~~v-~----~~~~-~~~~~~-----~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 132 RQV-K----AKQV-TFHRKK-----NLQYYEISAKSNYNFEK 162 (219)
T ss_pred ccC-C----HHHH-HHHHhc-----CCEEEEcCCCCCCCHHH
Confidence 211 1 1122 222222 35789999999999976
No 214
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.59 E-value=8.3e-15 Score=141.69 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=93.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|..++|||||+++|.+. .. .. ...|+......+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~-----------------------------~~--~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP-----------------------------KK--VAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC-----------------------------cc--ccCcccceEEEEEECCEEEE
Confidence 3899999999999999999832 00 00 01122222334556788999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccccch
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~~~e 423 (666)
||||||+.++......++..+|++|+|+|++... .+ ......+..+.. .++| +++|+||+|+.+..
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s~----~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-- 116 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---RV----QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-- 116 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---HH----HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC--
Confidence 9999999999888888999999999999998642 11 112222222211 3566 99999999987532
Q ss_pred hhhHHHHHH--hhhhhhcCcCCCCCcEEEeecccC------CCccc
Q 005973 424 RFDSIKVQL--GTFLRSCGFKDASLTWIPLSALEN------QNLVT 461 (666)
Q Consensus 424 ~~~~i~~el--~~~l~~~~~~~~~i~iIpvSA~tG------~nI~e 461 (666)
...++.+.+ ..+.+..+ ..++++++||++| .|+.+
T Consensus 117 ~~~~i~~~~~l~~~~~~~~---~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 117 LGADVIEYLSLEKLVNENK---SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred CHHHHHHhcCcccccCCCC---ceEEEEEeEceeCCCCccccCHHH
Confidence 122232222 11111111 2357899999998 66654
No 215
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.59 E-value=1.2e-14 Score=137.54 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=92.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--CeE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NYH 345 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~~~ 345 (666)
+|+|+|++|+|||||+++|+... ..... ...+.+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEY------------------------------DPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCc------------------------------CCChhHeEEEEEEECCEEEE
Confidence 58999999999999999998432 10000 001111112222222 467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHH-HHH---cCCCcEEEEEecccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~l-l~~---lgip~iIVViNK~Dlv~~~ 421 (666)
+.+||+||+.++.......+..+|++|+|+|....... ......+.. ... .+.| +++|+||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESF-------EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc
Confidence 88999999999888888888999999999999875211 122222222 222 2455 99999999987521
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .+++..+++..+ .+++++||++|.|+.+
T Consensus 121 ~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 121 QVS----KEEGKALAKEWG-----CPFIETSAKDNINIDE 151 (160)
T ss_pred eec----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence 111 223333443333 4789999999999966
No 216
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.59 E-value=1.1e-14 Score=142.67 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=95.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~~~ 345 (666)
++|+++|..++|||+|+.+++... +..+..+.+.... ....++.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-------------------------------f~~~~~~Ti~~~~~~~~~~~~~~v~ 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-------------------------------FPTDYIPTVFDNFSANVSVDGNTVN 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-------------------------------CCCCCCCcceeeeEEEEEECCEEEE
Confidence 689999999999999999998321 1111112111111 11122333467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc-
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK- 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~- 422 (666)
+.||||+|+++|...+..+++.+|++|||+|.+.... |+.+ ....+..++. -++| +|+|.||+|+.+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~~~---~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~ 123 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YENV---LKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQY 123 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HHHH---HHHHHHHHHHhCCCCC-EEEEEeChhhccChhh
Confidence 8899999999998888888999999999999987532 2111 1112222222 2456 999999999964210
Q ss_pred -----hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 -----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 -----e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.......++...+.+..+. .+++++||++|.|+.+
T Consensus 124 ~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 124 LADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 163 (176)
T ss_pred hhhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHH
Confidence 0001123344444444442 2589999999999976
No 217
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.59 E-value=1.6e-14 Score=139.67 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=91.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCCeEEE
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYHVV 347 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~~~i~ 347 (666)
|+|+|..|+|||||+++|++..- . .+..+.+.... ....+......+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--P-----------------------------EDYVPTVFENYSADVEVDGKPVELG 49 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCcEEeeeeEEEEECCEEEEEE
Confidence 58999999999999999984211 0 00011111111 1112222335688
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccchhh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
||||||+++|.......+..+|++|+|+|++... .|+ ......+..+.. .++| +|+|+||+|+... ....
T Consensus 50 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~-~~~~ 121 (174)
T smart00174 50 LWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---SFE---NVKEKWYPEVKHFCPNTP-IILVGTKLDLRED-KSTL 121 (174)
T ss_pred EEECCCCcccchhchhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEecChhhhhC-hhhh
Confidence 9999999998877777788999999999998642 111 111112222222 2566 9999999998741 1111
Q ss_pred h---------HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 426 D---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 426 ~---------~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+ ...++...+.+..++ .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 122 RELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVRE 162 (174)
T ss_pred hhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHH
Confidence 1 112233344444442 3689999999999976
No 218
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=2.8e-14 Score=145.60 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=97.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEecCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~~~ 343 (666)
..++|+++|..++|||+|+.+|+... . ..+..+.+..+.. ...+....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~--F-----------------------------~~~y~pTi~~~~~~~i~~~~~~ 60 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC--Y-----------------------------PETYVPTVFENYTAGLETEEQR 60 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC--C-----------------------------CCCcCCceeeeeEEEEEECCEE
Confidence 46899999999999999999998321 0 1111121111111 11223344
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~ 421 (666)
..+.||||+|+++|......+++.||++|||+|.+.... |+ ......+..+.. -++| +|+|.||+|+....
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~ 133 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD---SALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDL 133 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 678899999999998888888999999999999987521 11 111111222222 2455 99999999985311
Q ss_pred ch--------hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCC-Cccc
Q 005973 422 KD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (666)
Q Consensus 422 ~e--------~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~-nI~e 461 (666)
.. ......++...+.+.+++ .+|+++||++|+ |+.+
T Consensus 134 ~~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e 178 (232)
T cd04174 134 STLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHS 178 (232)
T ss_pred chhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHH
Confidence 00 011122345566665553 258999999998 7976
No 219
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.58 E-value=6e-15 Score=127.61 Aligned_cols=82 Identities=30% Similarity=0.415 Sum_probs=77.9
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC----ceEEEeeeeecCcccceeccCCceeEEeeccCcCcc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRV 569 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i 569 (666)
|+|+|+++|+.+ .|++ ++|+|++|.+++||+++++|.+ ..++|++|++++.++++|.|||+|+|.|++++..++
T Consensus 1 ~~~~I~~vf~v~g~GtV-v~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i 79 (87)
T cd03694 1 AEFQIDEIYSVPGVGTV-VGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLL 79 (87)
T ss_pred CEEEEEeEEEcCCcceE-EEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHc
Confidence 689999999988 9998 8999999999999999999984 689999999999999999999999999999999999
Q ss_pred ccccEEec
Q 005973 570 MSGGVLCH 577 (666)
Q Consensus 570 ~~G~VL~~ 577 (666)
++|++||+
T Consensus 80 ~~G~vl~~ 87 (87)
T cd03694 80 RKGMVLVS 87 (87)
T ss_pred CCccEEeC
Confidence 99999985
No 220
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.58 E-value=1.9e-14 Score=140.16 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=91.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~~ 344 (666)
.+|+|+|++|+|||||+++|+...... ...+ ++.......+.. ..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~-------------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE-------------------------------SYYP-TIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc-------------------------------ccCc-chhhhEEEEEEECCEEE
Confidence 579999999999999999999431100 0000 011111112222 345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+.+|......++..++++|+|+|.+.... ++.........+......++| +|+|+||+|+.......
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~ 125 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVS 125 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccC
Confidence 67899999999988877788899999999999987421 111111111111111123556 89999999987421111
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++..+.+.++ .+++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 126 T----EEGKELAESWG-----AAFLESSARENENVEE 153 (180)
T ss_pred H----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1 12223333333 4689999999999976
No 221
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=2.7e-14 Score=140.48 Aligned_cols=147 Identities=20% Similarity=0.202 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE--EEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~--~~~~~~~~~ 344 (666)
++|+|+|..++|||||+++|+...- ..+..+.++.+.. ...+.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-------------------------------SESTKSTIGVDFKIKTVYIENKII 49 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999983211 0111122222222 223333345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|.......+..+|++|+|+|++.... |. .....+..+..+ .+| +|+|+||+|+....
T Consensus 50 ~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~----~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~ 121 (188)
T cd04125 50 KLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE----NLKFWINEINRYARENVI-KVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhCCCCCe-EEEEEECCCCcccc
Confidence 67899999999998888888999999999999987521 11 111222222222 345 89999999987421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.-. . .....+....+ ++++++||++|.|+.+
T Consensus 122 ~v~-~---~~~~~~~~~~~-----~~~~evSa~~~~~i~~ 152 (188)
T cd04125 122 VVD-S---NIAKSFCDSLN-----IPFFETSAKQSINVEE 152 (188)
T ss_pred cCC-H---HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111 1 11122222223 4689999999999976
No 222
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.58 E-value=2.8e-14 Score=140.41 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=96.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~ 343 (666)
..++|+++|..++|||||+.+|+... +..+..+.+.... ....++...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-------------------------------f~~~~~pT~~~~~~~~~~~~~~~ 52 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-------------------------------FPENYVPTVFENYTASFEIDTQR 52 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCCccCCceeeeeEEEEEECCEE
Confidence 46789999999999999999998421 0111111111111 111223334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~ 421 (666)
..+.||||+|+++|......+++.+|++|||+|.+... .|+.+ ....+..++. -++| +|+|.||+|+.+..
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~---Sf~~~---~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~ 125 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSV---LKKWKGEIQEFCPNTK-MLLVGCKSDLRTDL 125 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHHHCCCCC-EEEEeEChhhhcCh
Confidence 56889999999999888888889999999999998752 12111 0111222222 2455 99999999986311
Q ss_pred c--------hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCC-ccc
Q 005973 422 K--------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (666)
Q Consensus 422 ~--------e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~n-I~e 461 (666)
. .......++..++.+.++. .+|+++||++|+| +.+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 126 TTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 170 (182)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHH
Confidence 0 0001123345555555552 3789999999998 976
No 223
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=2.3e-14 Score=159.24 Aligned_cols=141 Identities=26% Similarity=0.240 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+. ...+|+|.+.....+..++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv------------------------------s~~pgtTrd~~~~~i~~~g~ 251 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIV------------------------------SDIKGTTRDVVEGDFELNGI 251 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCcEEEEEEEEEEECCE
Confidence 457899999999999999999995322211 12368899888888888899
Q ss_pred EEEEEeCCCccchHH--------HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f~~--------~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+.++.. ....++..+|++|+|+|++.+.. .... .+..+...+.| +|+|+||+|
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s--------~~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT--------KDDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC--------hhHH-HHHHHhhCCCC-EEEEEECcc
Confidence 999999999865432 23456788999999999987531 1222 33334445777 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+... .. . .+.+.++ .+++++||++ .|+.+
T Consensus 322 l~~~---~~----~---~~~~~~~-----~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 322 LKIN---SL----E---FFVSSKV-----LNSSNLSAKQ-LKIKA 350 (442)
T ss_pred CCCc---ch----h---hhhhhcC-----CceEEEEEec-CCHHH
Confidence 9642 11 1 1112222 3678999998 57755
No 224
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=2e-14 Score=139.37 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE--EEEEecCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDSKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~--~~~~~~~~~ 344 (666)
++|+++|..|+|||||+.+++... . ..+.. .++.+.- ...++....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~-----------------------------~~~~~-~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--Y-----------------------------PTEYV-PTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCC-CceeeeeeEEEEECCEEE
Confidence 479999999999999999998421 0 00111 1112221 122232345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~ 422 (666)
.+.||||||+.+|......++..+|++|+|+|+++... | .......+..+.. .++| +|+|+||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 121 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---F---QNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVN 121 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChh
Confidence 77899999999988777777889999999999987521 1 1111122222322 2566 999999999864211
Q ss_pred --------hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 --------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 --------e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.......++...+.+..+. .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKE 164 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHH
Confidence 0001111233334433332 3689999999999966
No 225
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=4.1e-14 Score=142.31 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=95.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+|+|+.++|||||+++|+...-... .....|.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-----------------------------~~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCccceEEEEEEEECCEEEE
Confidence 48999999999999999999984311000 0001122222222333333356
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~~ 422 (666)
+.||||||++.|.......+..+|++|+|+|++.... + ......+..+.. ..+| +|+|+||+|+.....
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~----~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F----NHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA 128 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---H----HHHHHHHHHHHHhcCCCCc-EEEEEECccCccccC
Confidence 7899999999998888888899999999999986421 1 111122222222 2455 999999999864211
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .++...+++..+ ++++++||++|.|+.+
T Consensus 129 ~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 129 VS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (210)
T ss_pred CC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11 123334444433 4789999999999976
No 226
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=2.2e-14 Score=141.68 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~~~ 345 (666)
.+|+|+|..|+|||||+++|+...- ..+..+.+.... ....++.....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~-------------------------------~~~~~~t~~~~~~~~i~~~~~~~~ 49 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF-------------------------------PQVYEPTVFENYVHDIFVDGLHIE 49 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCccCCcceeeeEEEEEECCEEEE
Confidence 3799999999999999999984210 001111111111 11122223467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccch
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~e 423 (666)
+.||||||+++|......++..+|++|+|+|.+.... |+. .....+..+.. .++| +|+|.||+|+......
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~~---~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LEN---VESKWLGEIREHCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HHH---HHHHHHHHHHHhCCCCC-EEEEEEChhhccChhh
Confidence 8899999999887766667888999999999987521 111 11112222222 2566 9999999999753211
Q ss_pred hhh--------HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFD--------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~--------~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.-. ...++...+++..+ .++++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNE 164 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHH
Confidence 100 00112223333322 25789999999999976
No 227
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=3.1e-14 Score=139.57 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=94.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~~~~~ 345 (666)
++|+++|..++|||||+++|+... ...+..+.+..+.. ...++.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-------------------------------f~~~~~~t~~~~~~~~~~~~~~~~~ 50 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-------------------------------YPETYVPTVFENYTASFEIDEQRIE 50 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-------------------------------CCCCcCCceEEEEEEEEEECCEEEE
Confidence 579999999999999999998421 01111121111111 1122333466
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc-
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK- 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~- 422 (666)
+.||||||+++|......+++.+|++|+|+|.+.... |+. .....+..++. -.+| +|+|.||+|+.+...
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~~---~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~ 123 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LDS---VLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLST 123 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HHH---HHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhH
Confidence 8899999999998777778899999999999987531 111 11122222222 2455 899999999863110
Q ss_pred -------hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCC-ccc
Q 005973 423 -------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (666)
Q Consensus 423 -------e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~n-I~e 461 (666)
.......++..++.+.++. .+++++||++|+| +.+
T Consensus 124 ~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 124 LMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD 166 (178)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence 0001122344455555442 3689999999995 866
No 228
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=2.9e-14 Score=137.45 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=89.8
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-CeEEEEE
Q 005973 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (666)
Q Consensus 271 IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-~~~i~li 349 (666)
|+|++|||||||+++|++... .....+++|++.....+... +..+.||
T Consensus 1 iiG~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-------------------------------KVANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-------------------------------cccCCCceeecCcceEEEcCCCCeEEEE
Confidence 589999999999999994311 01112455666555556666 8899999
Q ss_pred eCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH----------HcCCCcEEEEE
Q 005973 350 DSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----------SFGVDQLIVAV 412 (666)
Q Consensus 350 DTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~----------~lgip~iIVVi 412 (666)
||||+.+ +...+...+..+|++++|+|+...... +..........+...+. ..+.| +++|+
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 127 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI-GGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVL 127 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc-cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEE
Confidence 9999733 233455667889999999999865100 00000011111111111 13566 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+... ....... ...... ....+++++||++|.|+.+
T Consensus 128 NK~Dl~~~--~~~~~~~--~~~~~~-----~~~~~~~~~Sa~~~~gl~~ 167 (176)
T cd01881 128 NKIDLDDA--EELEEEL--VRELAL-----EEGAEVVPISAKTEEGLDE 167 (176)
T ss_pred EchhcCch--hHHHHHH--HHHHhc-----CCCCCEEEEehhhhcCHHH
Confidence 99999742 2211111 111111 1235689999999999965
No 229
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.1e-14 Score=140.52 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=107.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
....++|+++|.+++|||.|+-++....- .......+-+|.....+..+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f-------------------------------~~~~~sTiGIDFk~kti~l~ 57 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSF-------------------------------NTSFISTIGIDFKIKTIELD 57 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccC-------------------------------cCCccceEEEEEEEEEEEeC
Confidence 34679999999999999999999983211 11112334455555555554
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 --~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||.|+++|...+-.+++.|++++||+|.+... .|+.+.. ..+.+.....-+++ +++|.||+|+..
T Consensus 58 g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~---Sfeni~~-W~~~I~e~a~~~v~-~~LvGNK~D~~~- 131 (207)
T KOG0078|consen 58 GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEK---SFENIRN-WIKNIDEHASDDVV-KILVGNKCDLEE- 131 (207)
T ss_pred CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchH---HHHHHHH-HHHHHHhhCCCCCc-EEEeeccccccc-
Confidence 456779999999999999999999999999999998743 2322221 22222222233677 899999999974
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+...-.++-.++..++| +.|+++||++|.||.+
T Consensus 132 ---~R~V~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 132 ---KRQVSKERGEALAREYG-----IKFFETSAKTNFNIEE 164 (207)
T ss_pred ---cccccHHHHHHHHHHhC-----CeEEEccccCCCCHHH
Confidence 12223344555666666 5789999999999987
No 230
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.56 E-value=4.2e-14 Score=131.90 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=93.9
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-CeEEEEE
Q 005973 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (666)
Q Consensus 271 IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-~~~i~li 349 (666)
|+|++|+|||||+++|++..... ....++.|.......+... ...+.||
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999998532111 1112344554444444433 6789999
Q ss_pred eCCCccchH-------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 350 DSPGHKDFV-------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 350 DTPGh~~f~-------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
||||+.++. ..+...+..+|++++|+|+..... ......+......+.| +++|+||+|+....
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~--------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD--------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC--------HHHHHHHHHHHhcCCe-EEEEEEccccCChh-
Confidence 999976653 344456788999999999998631 2222235555667777 99999999998532
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
......... ... .......+++++||+++.|+.+
T Consensus 121 -~~~~~~~~~-~~~---~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 121 -EEEELLELR-LLI---LLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred -hHHHHHHHH-Hhh---cccccCCceEEEeeeccCCHHH
Confidence 211111100 111 1112356889999999999965
No 231
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=3.3e-14 Score=136.45 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=87.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCe-EEEEEEEEEecCCeEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSKNYHV 346 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~Gi-Tid~~~~~~~~~~~~i 346 (666)
+|+++|.+|+|||||+++|+...- .. +..+.+ +.......++.....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IG-----------------------------EYDPNLESLYSRQVTIDGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--cc-----------------------------ccCCChHHhceEEEEECCEEEEE
Confidence 489999999999999999984210 00 000000 1111112233334568
Q ss_pred EEEeCCCccc-hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEeccccccc
Q 005973 347 VVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 347 ~liDTPGh~~-f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViNK~Dlv~~ 420 (666)
.||||||+.. +...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|+||+|+...
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 121 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD----EISQLKQLIREIKKRDREIP-VILVGNKADLLHY 121 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHh
Confidence 8999999985 34456667888999999999987521 11 11112222222 3566 9999999998642
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCC-Cccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~-nI~e 461 (666)
..-. .++...+.+..+ .+++++||++|. |+.+
T Consensus 122 ~~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 122 RQVS----TEEGEKLASELG-----CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred CccC----HHHHHHHHHHcC-----CEEEEeCCCCCchhHHH
Confidence 1111 122233333333 468999999995 8966
No 232
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=8.5e-14 Score=133.36 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=115.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+...+|+|+|..++||||++++|......+....... +... ..+.+|+...+..+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~-------------------~s~k--~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS-------------------VSGK--GKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccc-------------------cccc--cccceeEeecccceEEc
Confidence 35568899999999999999999996644322111000 0000 03447777777777765
Q ss_pred C-eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC-CCcEEEEEeccccccc
Q 005973 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~-~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVViNK~Dlv~~ 420 (666)
+ +.+.|+|||||.+|-.++.-..+.++++|++||.+.+. ....++.+.++.... +| ++|++||.|+.+.
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~--------~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPI--------TFHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCc--------chHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 5 89999999999999999999999999999999999873 224466777777777 66 9999999999863
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. - ++++++++... ..+++|+++|..+++..+
T Consensus 137 ~p--p----e~i~e~l~~~~---~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 137 LP--P----EKIREALKLEL---LSVPVIEIDATEGEGARD 168 (187)
T ss_pred CC--H----HHHHHHHHhcc---CCCceeeeecccchhHHH
Confidence 22 1 22333332221 357899999999999865
No 233
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.56 E-value=5.3e-14 Score=136.12 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=90.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEE-EEEEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid-~~~~~~~~~~~~ 345 (666)
.+|+|+|+.++|||||+++|++..- .....+.+... .....+......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 50 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-------------------------------PEVYVPTVFENYVADIEVDGKQVE 50 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccccceEEEEEECCEEEE
Confidence 4799999999999999999984211 00011111111 111222333456
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccch
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~e 423 (666)
+.||||||+++|.......+..+|++++|+|++... .+..+ ....+..++. .++| +|+|+||+|+.....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~~~---~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 122 (175)
T cd01870 51 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENI---PEKWTPEVKHFCPNVP-IILVGNKKDLRNDEH- 122 (175)
T ss_pred EEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHhhCCCCC-EEEEeeChhcccChh-
Confidence 889999999988776666778899999999998642 11111 0111122222 2566 999999999864211
Q ss_pred hhhHH---------HHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i---------~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+.+ ..+...+.+.++ ..+++++||++|.|+.+
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVRE 165 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHH
Confidence 11101 122223333333 24789999999999966
No 234
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.56 E-value=1e-14 Score=126.18 Aligned_cols=84 Identities=36% Similarity=0.512 Sum_probs=78.6
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCC--CceEEEeeeeecCcccceeccCCceeEEeeccCcCcccc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~ 571 (666)
|+|+|+++|+.+ .|++ ++|+|++|++++||+|.++|. +...+|++|++++.++++|.|||+|+|.|++++..++.+
T Consensus 1 ~r~~V~~v~~~~g~G~v-v~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~r 79 (87)
T cd03697 1 FLMPIEDVFSIPGRGTV-VTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVER 79 (87)
T ss_pred CEeeEEEEEeCCCcEEE-EEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCC
Confidence 689999999988 8988 899999999999999999996 567899999999999999999999999999999899999
Q ss_pred ccEEecCC
Q 005973 572 GGVLCHPD 579 (666)
Q Consensus 572 G~VL~~~~ 579 (666)
|+|||+++
T Consensus 80 G~vl~~~~ 87 (87)
T cd03697 80 GMVLAKPG 87 (87)
T ss_pred ccEEecCC
Confidence 99999863
No 235
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=4e-14 Score=144.68 Aligned_cols=124 Identities=20% Similarity=0.293 Sum_probs=90.5
Q ss_pred CCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE
Q 005973 257 PDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV 336 (666)
Q Consensus 257 ~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~ 336 (666)
.+.+++..+.++|++||.+|+|||||.|.|++......++. ..+|.....
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K------------------------------~~TTr~~il 112 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK------------------------------VHTTRHRIL 112 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccc------------------------------ccceeeeee
Confidence 34446667899999999999999999999998766655554 345777778
Q ss_pred EEEecCCeEEEEEeCCCcc------------chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-c
Q 005973 337 AYFDSKNYHVVVLDSPGHK------------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F 403 (666)
Q Consensus 337 ~~~~~~~~~i~liDTPGh~------------~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l 403 (666)
..+..+..+++|+||||.. .+..+...++..||++++|+|++..-.+ +.++ .+..++. .
T Consensus 113 gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~-----l~p~---vl~~l~~ys 184 (379)
T KOG1423|consen 113 GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTP-----LHPR---VLHMLEEYS 184 (379)
T ss_pred EEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCc-----cChH---HHHHHHHHh
Confidence 8888899999999999921 1344556678889999999999853111 1122 2333333 3
Q ss_pred CCCcEEEEEecccccc
Q 005973 404 GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 404 gip~iIVViNK~Dlv~ 419 (666)
.+| -|+|+||+|...
T Consensus 185 ~ip-s~lvmnkid~~k 199 (379)
T KOG1423|consen 185 KIP-SILVMNKIDKLK 199 (379)
T ss_pred cCC-ceeeccchhcch
Confidence 566 689999999874
No 236
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.55 E-value=4.6e-14 Score=137.89 Aligned_cols=150 Identities=22% Similarity=0.243 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+..+|+++|..|||||||+++|... .+. . ...|.......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~--~~~----------------------------~----~~pT~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG--EIS----------------------------E----TIPTIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS--SEE----------------------------E----EEEESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc--ccc----------------------------c----cCcccccccceeeeCc
Confidence 46789999999999999999999731 100 0 1123334445666789
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHH-HH---HcCCCcEEEEEecccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IR---SFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~l-l~---~lgip~iIVViNK~Dlv~ 419 (666)
..+.|||.+|+..+.+.+..++..+|++|+|||+++.. . ....++.+.. +. ..++| ++|++||+|+.+
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~------~-l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE------R-LQEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG------G-HHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEecccce------e-ecccccchhhhcchhhcccce-EEEEeccccccC
Confidence 99999999999988888888889999999999998642 0 1233333322 22 12456 999999999875
Q ss_pred ccchhhhHHHHHHhhhhhhcCcC-CCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~-~~~i~iIpvSA~tG~nI~e 461 (666)
.. ..+++.. .+.-..+. ...+.++++||.+|+|+.+
T Consensus 130 ~~--~~~~i~~----~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 130 AM--SEEEIKE----YLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp SS--THHHHHH----HTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred cc--hhhHHHh----hhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 32 1222332 22212222 3567889999999999976
No 237
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.55 E-value=2.8e-13 Score=137.80 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=112.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
...+..|+|+|++|+|||||++.|+...... ......|. +. .+...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~----i~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-IT----VVTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EE----EEecC
Confidence 4556789999999999999999998532110 00011231 11 12236
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
+.+++|+||||+. ..++..+..+|++++|+|+..+ +..++.+.+.++...|+|.+|+|+||+|++.. .
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~--------~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~ 149 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFG--------FEMETFEFLNILQVHGFPRVMGVLTHLDLFKK-N 149 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcC--------CCHHHHHHHHHHHHcCCCeEEEEEeccccCCc-H
Confidence 7889999999964 5667778889999999999876 34577778888888899866679999999852 3
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCC
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 487 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~ 487 (666)
..++.+.+++...+...-+ ...+++++||++.-.+ +|-.+..|+..|..+.+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~----------~~~e~~~~~r~i~~~~~~ 202 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRY----------PKTEIHNLARFISVMKFR 202 (225)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCC----------CHHHHHHHHHHHHhCCCC
Confidence 3455566666653321112 2358899999987554 233345577777655443
No 238
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=1.5e-13 Score=130.48 Aligned_cols=147 Identities=18% Similarity=0.262 Sum_probs=93.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEE
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~l 348 (666)
|+++|++|+|||||++.|++.... .......+.|.......+ . ..+.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~--~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-----------------------------ARTSKTPGKTQLINFFNV--N-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-----------------------------eeecCCCCcceeEEEEEc--c-CeEEE
Confidence 899999999999999999832110 011112344544433332 2 28999
Q ss_pred EeCCCccc----------hHHHH---HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 349 LDSPGHKD----------FVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 349 iDTPGh~~----------f~~~~---~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
|||||+.. +...+ +.....++++++|+|+.... .....+.+.++...+.| +++|+||+
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 99999643 22222 22233468899999997652 23455667778888888 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+.. ..........+...++... ...+++++||+++.|+.+
T Consensus 121 D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 121 DKLK--KSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred hcCC--hHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHH
Confidence 9964 2333334444444443211 235789999999999965
No 239
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=138.38 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=103.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEE--EEe
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFD 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~--~~~ 340 (666)
+...++|+|+|.+|+|||+|++++.+..-. ......|..+.... .++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~-------------------------------~qykaTIgadFltKev~Vd 54 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------QQYKATIGADFLTKEVQVD 54 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHH-------------------------------HHhccccchhheeeEEEEc
Confidence 346799999999999999999999954110 00111222222222 333
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDA 417 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dl 417 (666)
..-..+.||||+|+++|...-...++.||+++||+|..... .|+.+...-.|.+..+.-. ..| +||+.||+|+
T Consensus 55 ~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~---Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~ 130 (210)
T KOG0394|consen 55 DRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPK---SFENLENWRKEFLIQASPQDPETFP-FVILGNKIDV 130 (210)
T ss_pred CeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChh---hhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccC
Confidence 33445679999999999998888899999999999998753 2333333333433333221 234 8999999998
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+.. .+ ....+.....++..+ ++|++.+||+.+.|+.+
T Consensus 131 ~~~~-~r-~VS~~~Aq~WC~s~g----nipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 131 DGGK-SR-QVSEKKAQTWCKSKG----NIPYFETSAKEATNVDE 168 (210)
T ss_pred CCCc-cc-eeeHHHHHHHHHhcC----CceeEEecccccccHHH
Confidence 6421 12 122334445554443 78999999999999976
No 240
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=9.4e-14 Score=156.24 Aligned_cols=145 Identities=21% Similarity=0.275 Sum_probs=104.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+..+|+++|++|+|||||+|+|++....+ |+ -+|+|++.....+...++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~V-----------------gN--------------wpGvTVEkkeg~~~~~~~ 50 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKV-----------------GN--------------WPGVTVEKKEGKLKYKGH 50 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCcee-----------------cC--------------CCCeeEEEEEEEEEecCc
Confidence 34569999999999999999999653332 22 279999999999999999
Q ss_pred EEEEEeCCCccchH------HHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDFV------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f~------~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.|+|+||.-.+. .-...++ ..+|++|.|+||++- +. ......++.++|+| +|+++|++|
T Consensus 51 ~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------eR-nLyltlQLlE~g~p-~ilaLNm~D 119 (653)
T COG0370 51 EIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------ER-NLYLTLQLLELGIP-MILALNMID 119 (653)
T ss_pred eEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------HH-HHHHHHHHHHcCCC-eEEEeccHh
Confidence 99999999943321 1112222 348999999999862 22 33344556778999 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ...+.=.+++.+.+ | +|++++||++|.|+++
T Consensus 120 ~A~~--~Gi~ID~~~L~~~L---G-----vPVv~tvA~~g~G~~~ 154 (653)
T COG0370 120 EAKK--RGIRIDIEKLSKLL---G-----VPVVPTVAKRGEGLEE 154 (653)
T ss_pred hHHh--cCCcccHHHHHHHh---C-----CCEEEEEeecCCCHHH
Confidence 8742 11111223344443 4 6899999999999966
No 241
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.53 E-value=4.5e-14 Score=132.26 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.+|.+||.+++|||||+++|.+... ....|..+.+. =
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----------------------------------~~~KTq~i~~~--------~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----------------------------------RYKKTQAIEYY--------D 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----------------------------------CcCccceeEec--------c
Confidence 3699999999999999999984211 11123322211 1
Q ss_pred EEEeCCC----ccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 347 ~liDTPG----h~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
.+||||| +..|...++..+..||++++|.||+.+.. ..--.++..+..| +|=|+||+|+.. +.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~-----------~~pP~fa~~f~~p-vIGVITK~Dl~~-~~ 105 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS-----------VFPPGFASMFNKP-VIGVITKIDLPS-DD 105 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc-----------cCCchhhcccCCC-EEEEEECccCcc-ch
Confidence 3599999 56678888888899999999999997521 1111234556666 999999999983 22
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.. +...++|+..|+. .++++|+.+|+|+.+
T Consensus 106 ~~i----~~a~~~L~~aG~~----~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 106 ANI----ERAKKWLKNAGVK----EIFEVSAVTGEGIEE 136 (143)
T ss_pred hhH----HHHHHHHHHcCCC----CeEEEECCCCcCHHH
Confidence 332 3444566667774 359999999999966
No 242
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.53 E-value=4.1e-14 Score=121.28 Aligned_cols=82 Identities=34% Similarity=0.577 Sum_probs=78.0
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCcccccc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~ 573 (666)
|+|+|+++|+.+ .|.+ +.|+|++|++++||++.++|++...+|++|+.++.++++|.|||.|+|.|++++..++.+|+
T Consensus 1 lr~~i~~~~~~~~~g~v-v~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~ 79 (83)
T cd03696 1 FRLPIDRVFTVKGQGTV-VTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGD 79 (83)
T ss_pred CEEEEEEEEEcCCcEEE-EEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCcc
Confidence 689999999988 8888 89999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEec
Q 005973 574 VLCH 577 (666)
Q Consensus 574 VL~~ 577 (666)
+||.
T Consensus 80 vl~~ 83 (83)
T cd03696 80 VLSS 83 (83)
T ss_pred EEcC
Confidence 9973
No 243
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.1e-14 Score=134.44 Aligned_cols=149 Identities=20% Similarity=0.207 Sum_probs=105.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~ 343 (666)
.++++++|..++|||.|+-+++...- ..-+...+.++.+.+.+.. ..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-------------------------------~~~hd~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-------------------------------QPVHDLTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-------------------------------cccccceeeeeeceeEEEEcCce
Confidence 57899999999999999999983211 1111123344555555544 45
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCc--EEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~--iIVViNK~Dlv~~~ 421 (666)
.++.||||.||+.|...+.++++.|-++|||+|.+... .|+. ...+|.-++..+.++ |+++.||+|+..
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~---sF~h----L~~wL~D~rq~~~~NmvImLiGNKsDL~~-- 125 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRE---SFNH----LTSWLEDARQHSNENMVIMLIGNKSDLEA-- 125 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchh---hHHH----HHHHHHHHHHhcCCCcEEEEEcchhhhhc--
Confidence 66889999999999999999999999999999998753 2222 222233344443333 677889999974
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+.-.++-..+.++.++ .++.+||++++|+++
T Consensus 126 --rR~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEE 158 (216)
T KOG0098|consen 126 --RREVSKEEGEAFAREHGL-----IFMETSAKTAENVEE 158 (216)
T ss_pred --cccccHHHHHHHHHHcCc-----eeehhhhhhhhhHHH
Confidence 223345667777777775 678999999999977
No 244
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.52 E-value=2e-13 Score=138.61 Aligned_cols=152 Identities=12% Similarity=0.140 Sum_probs=93.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~~~~~ 345 (666)
.+|+|+|..++|||+|+.+|+... +..+..+.+..+.. ...++.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-------------------------------f~~~y~pTi~~~~~~~~~~~~~~v~ 50 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-------------------------------YPGSYVPTVFENYTASFEIDKRRIE 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-------------------------------CCCccCCccccceEEEEEECCEEEE
Confidence 589999999999999999998421 11111122111111 1122233466
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccch
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~e 423 (666)
+.||||+|++.|......++..+|++|+|+|.+.... |+. ........+.. -++| +|+|.||+|+.... .
T Consensus 51 L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~~---i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~-~ 122 (222)
T cd04173 51 LNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LDS---VLKKWQGETQEFCPNAK-VVLVGCKLDMRTDL-A 122 (222)
T ss_pred EEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HHH---HHHHHHHHHHhhCCCCC-EEEEEECcccccch-h
Confidence 8899999999998888888999999999999987521 111 10111111222 3566 99999999986421 1
Q ss_pred hhh---------HHHHHHhhhhhhcCcCCCCCcEEEeecccCCC-ccc
Q 005973 424 RFD---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (666)
Q Consensus 424 ~~~---------~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~n-I~e 461 (666)
... ...++...+.+..+ .++++++||++++| +.+
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~----~~~y~E~SAk~~~~~V~~ 166 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVG----AVSYVECSSRSSERSVRD 166 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcC----CCEEEEcCCCcCCcCHHH
Confidence 111 11123333444444 24789999999985 866
No 245
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.52 E-value=9.2e-14 Score=140.97 Aligned_cols=148 Identities=17% Similarity=0.088 Sum_probs=87.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|..|+|||||+++|+...... ...+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~----------------------------~~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD----------------------------HAYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc----------------------------cCcCCCccccceEEEEEECCEEEEE
Confidence 479999999999999999997321100 0000001111112222333455778
Q ss_pred EEEeCCCccchHHHHHHhcc-cCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 005973 347 VVLDSPGHKDFVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~-~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~~ 421 (666)
.||||||+..+.... .+. .+|++|+|+|+++... |. ...+.+..+.. .++| +|+|+||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~S---~~----~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~ 122 (221)
T cd04148 53 VVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRSS---FE----RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR 122 (221)
T ss_pred EEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc
Confidence 999999998443332 344 8999999999987521 11 12223333333 3566 99999999987421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .++...+...++ .+++++||++|.|+.+
T Consensus 123 ~v~----~~~~~~~a~~~~-----~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 123 EVS----VQEGRACAVVFD-----CKFIETSAGLQHNVDE 153 (221)
T ss_pred eec----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 111 111222332323 4689999999999976
No 246
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.51 E-value=9.4e-14 Score=118.51 Aligned_cols=80 Identities=30% Similarity=0.479 Sum_probs=74.4
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCcccccc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~ 573 (666)
|||+|.++|+.. .|.. ++|+|++|.+++||+|+++|.+..++|++|+.++.+++.|.|||+|+|.|+ +..++++|+
T Consensus 1 lr~~V~dv~k~~~~~~~-v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~ 77 (81)
T cd03695 1 FRFPVQYVIRPNADFRG-YAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGD 77 (81)
T ss_pred CEeeEEEEEeeCCCcEE-EEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCC
Confidence 689999999876 6667 899999999999999999999999999999999999999999999999998 467899999
Q ss_pred EEec
Q 005973 574 VLCH 577 (666)
Q Consensus 574 VL~~ 577 (666)
+||.
T Consensus 78 vl~~ 81 (81)
T cd03695 78 VIVA 81 (81)
T ss_pred EEeC
Confidence 9984
No 247
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.50 E-value=6.1e-14 Score=126.29 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=78.9
Q ss_pred eeeEEEEEEEEecCC-CCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeee
Q 005973 584 IATHLELKVLVLDFA-PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQY 662 (666)
Q Consensus 584 ~~~~F~a~i~vl~~~-~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~ 662 (666)
.++.|+|+++||+++ .+|.+||++.||+|+.+++|+|.+|.+++|+++|+..+++|++|++|+.|.|+|++.+|||+|+
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 367899999999999 8899999999999999999999999999999999988889999999999999999999999999
Q ss_pred ccCC
Q 005973 663 YFVC 666 (666)
Q Consensus 663 ~~~~ 666 (666)
|++|
T Consensus 82 ~~~~ 85 (108)
T cd03704 82 FEDF 85 (108)
T ss_pred cccC
Confidence 9875
No 248
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=1.3e-13 Score=137.67 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=89.9
Q ss_pred EeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--ecCCeEEEEE
Q 005973 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNYHVVVL 349 (666)
Q Consensus 272 iG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~~~~~~i~li 349 (666)
+|..++|||||+.+|++. . ...+..+.+..+.....+ +.....+.||
T Consensus 1 vG~~~vGKTsLi~r~~~~--~-----------------------------f~~~~~~Tig~~~~~~~~~~~~~~~~l~iw 49 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--E-----------------------------FEKKYVATLGVEVHPLVFHTNRGPIRFNVW 49 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--C-----------------------------CCCCCCCceeEEEEEEEEEECCEEEEEEEE
Confidence 699999999999999832 1 111112222223322333 3345678899
Q ss_pred eCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccchhhhH
Q 005973 350 DSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 350 DTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
||||+++|...+..+++.+|++|+|+|++.... +. .....+..+.. -++| +|+|.||+|+... ...
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~----~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~-~v~--- 117 (200)
T smart00176 50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK----NVPNWHRDLVRVCENIP-IVLCGNKVDVKDR-KVK--- 117 (200)
T ss_pred ECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH----HHHHHHHHHHHhCCCCC-EEEEEECcccccc-cCC---
Confidence 999999999888889999999999999987532 11 11122222222 3566 9999999998631 111
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+.+ .+.+.. .++++++||++|.||.+
T Consensus 118 -~~~~-~~~~~~-----~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 118 -AKSI-TFHRKK-----NLQYYDISAKSNYNFEK 144 (200)
T ss_pred -HHHH-HHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 1111 222222 35789999999999976
No 249
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.50 E-value=1.6e-13 Score=157.64 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=95.7
Q ss_pred eCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEEEeCC
Q 005973 273 GHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSP 352 (666)
Q Consensus 273 G~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~liDTP 352 (666)
|.+|+|||||+|+|++... .....+|+|++.....+..++..+.|||||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8999999999999984311 112247899998888888888899999999
Q ss_pred CccchHHH------HHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 353 GHKDFVPN------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 353 Gh~~f~~~------~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
|+.++... .... ...+|++++|+|+++. . ...+....+...++| +|+|+||+|+.+...
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------e-r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~-- 116 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------E-RNLYLTLQLLELGIP-MILALNLVDEAEKKG-- 116 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------h-hhHHHHHHHHhcCCC-EEEEEehhHHHHhCC--
Confidence 98776432 1111 2469999999999863 1 223333445567888 999999999864211
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .+...+.+.++ ++++++||++|+|+++
T Consensus 117 i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 117 IR---IDEEKLEERLG-----VPVVPTSATEGRGIER 145 (591)
T ss_pred Ch---hhHHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 11 12223333333 4789999999999976
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=2.3e-13 Score=123.45 Aligned_cols=107 Identities=25% Similarity=0.305 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+|.+|+|||||+|+|++.... .....++.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA------------------------------KVSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS------------------------------EESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccc------------------------------cccccccceeeeeeeeeeeceeeEE
Confidence 5899999999999999999953211 1112245666665566777888999
Q ss_pred EEeCCCccc---------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 348 VLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 348 liDTPGh~~---------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
|+||||..+ ........+..+|++|+|+|+... ......+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~--------~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP--------ITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH--------SHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999533 334566667889999999998763 2334555666665 5566 9999998
No 251
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.49 E-value=1.8e-13 Score=122.84 Aligned_cols=83 Identities=39% Similarity=0.612 Sum_probs=79.1
Q ss_pred eeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeec
Q 005973 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYY 663 (666)
Q Consensus 584 ~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~ 663 (666)
.+..|+|+++|+.++.||.+|+++.||+|+..++|+|.+|.+.+|.+|++..+++|++|++|+.|.|+|++++|||+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 46899999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred cCC
Q 005973 664 FVC 666 (666)
Q Consensus 664 ~~~ 666 (666)
.+|
T Consensus 82 ~~~ 84 (107)
T cd04093 82 KDN 84 (107)
T ss_pred ccC
Confidence 865
No 252
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.49 E-value=4.3e-13 Score=137.17 Aligned_cols=82 Identities=27% Similarity=0.321 Sum_probs=61.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++|.+|+|||||+++|++....+ ....+.|.+.....+...+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------------------------------~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------------------------------AAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCCccccceEEEEEECCeEEE
Confidence 68999999999999999999532111 11234566655666667888999
Q ss_pred EEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCC
Q 005973 348 VLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (666)
Q Consensus 348 liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g 380 (666)
+|||||+.+ +...++..++.+|++|+|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999743 334567788999999999999764
No 253
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=2e-13 Score=140.44 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=99.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+....|++||.+|||||||+++|......|.... -+|+.+....+.+++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~Ya-------------------------------FTTL~P~iG~v~ydd 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYA-------------------------------FTTLRPHIGTVNYDD 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccc-------------------------------eeeeccccceeeccc
Confidence 4556799999999999999999997766554332 356665555555555
Q ss_pred eE-EEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 344 YH-VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 344 ~~-i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
+. +++-|.||..+ .--..++.+..++.+++|||++.+.....++.+.....|.-.+-+.+.-++.+||+||+
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 44 99999999433 34556677778999999999987622111111111112222222334444589999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+.+..+ ...+++.+.+ . +..++|+||++|+|+.+
T Consensus 323 D~~eae~----~~l~~L~~~l---q----~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 323 DLPEAEK----NLLSSLAKRL---Q----NPHVVPVSAKSGEGLEE 357 (366)
T ss_pred CchhHHH----HHHHHHHHHc---C----CCcEEEeeeccccchHH
Confidence 9963211 1223333333 2 23589999999999965
No 254
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.49 E-value=2.4e-13 Score=130.58 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=84.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|..|+|||||+.+++... ... .. ....+. . .....++.....+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~--f~~-------------------------~~--~~~~~~-~-~~~i~~~~~~~~l 49 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS--YVQ-------------------------LE--SPEGGR-F-KKEVLVDGQSHLL 49 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC--CCC-------------------------CC--CCCccc-e-EEEEEECCEEEEE
Confidence 479999999999999999998321 000 00 000010 0 1111222223568
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccccccc
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~~~ 422 (666)
.||||+|+... ..+..+|++|+|+|.+.... |+.+ ...+..+.. .++| +++|.||+|+...+.
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~~~----~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~ 116 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQTV----YNLYHQLSSYRNISEIP-LILVGTQDAISESNP 116 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HHHH----HHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCC
Confidence 89999999752 23467999999999987532 2211 122222222 2355 999999999853222
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .++..++.++. ..++|+++||++|.||.+
T Consensus 117 ~~v~--~~~~~~~~~~~----~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 117 RVID--DARARQLCADM----KRCSYYETCATYGLNVER 149 (158)
T ss_pred cccC--HHHHHHHHHHh----CCCcEEEEecCCCCCHHH
Confidence 1111 12222333222 135789999999999976
No 255
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=8.2e-14 Score=129.72 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=101.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE--EEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--AVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~--~~~~~~~ 341 (666)
...++|.+||..|+|||+|+-+++.. .+..+....|.+|. ....++.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~-------------------------------~fd~~~~~tIGvDFkvk~m~vdg 57 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSN-------------------------------TFDDLHPTTIGVDFKVKVMQVDG 57 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhc-------------------------------ccCccCCceeeeeEEEEEEEEcC
Confidence 45789999999999999999999832 11222222233444 4444555
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
....+.||||+|+++|...+.++++.|.++|+|+|.+.... |.++.....|.-.+.-...+- .++|.||+|...
T Consensus 58 ~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes-- 131 (209)
T KOG0080|consen 58 KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FVKLDIWLKELDLYSTNPDII-KMLVGNKIDKES-- 131 (209)
T ss_pred ceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HHhHHHHHHHHHhhcCCccHh-Hhhhcccccchh--
Confidence 67889999999999999999999999999999999987532 222211122211111112222 378899999753
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+| ..-+++-.++.+.+. .-|+.+||++.+|+..
T Consensus 132 -~R-~V~reEG~kfAr~h~-----~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 132 -ER-VVDREEGLKFARKHR-----CLFIECSAKTRENVQC 164 (209)
T ss_pred -cc-cccHHHHHHHHHhhC-----cEEEEcchhhhccHHH
Confidence 12 112344455555544 3689999999999954
No 256
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.48 E-value=2.6e-13 Score=129.46 Aligned_cols=149 Identities=21% Similarity=0.219 Sum_probs=95.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
||+++|..++|||||+++|.... ... ......|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPE---------------------------NYIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTS---------------------------SSETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--ccc---------------------------ccccccccccccccccccccccccc
Confidence 69999999999999999998421 000 0011122222223333333456688
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH-HcC-CCcEEEEEeccccccccchhh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFG-VDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lg-ip~iIVViNK~Dlv~~~~e~~ 425 (666)
|||++|+.+|.......+..+|++|+|+|.+... .|..+ ...+..+. ... .+++|||.||.|+.+...-.
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~---S~~~~----~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~- 123 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEE---SFENL----KKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS- 123 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHH---HHHTH----HHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC-
T ss_pred cccccccccccccccccccccccccccccccccc---ccccc----ccccccccccccccccceeeeccccccccccch-
Confidence 9999999999877777789999999999998642 22221 12222222 222 23499999999988522211
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.++...+.+.++ .+++.+||+++.|+.+
T Consensus 124 ---~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 124 ---VEEAQEFAKELG-----VPYFEVSAKNGENVKE 151 (162)
T ss_dssp ---HHHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred ---hhHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence 233444444443 5889999999999976
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=4.5e-13 Score=123.17 Aligned_cols=144 Identities=20% Similarity=0.159 Sum_probs=90.9
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeE-EEEEEEEEe--cCCeEEE
Q 005973 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYFD--SKNYHVV 347 (666)
Q Consensus 271 IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiT-id~~~~~~~--~~~~~i~ 347 (666)
|+|++|+|||||+++|++..... .+ ...| .+.....+. ..+..+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~------------------------------~~--~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP------------------------------EE--YETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC------------------------------cc--cccchhheeeEEEEECCEEEEEE
Confidence 58999999999999999542210 00 0111 222222222 2357799
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHH---HHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR---EHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~---e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
|||+||+..+.......+..+|++|+|+|+..+... ..... ..+......++| +|+|+||+|+.......
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVS 121 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchH
Confidence 999999998888878888999999999999976311 01111 122233445666 99999999997543222
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ....... ...++++++|+.++.|+.+
T Consensus 122 ~~~----~~~~~~~----~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 122 EEE----LAEQLAK----ELGVPYFETSAKTGENVEE 150 (157)
T ss_pred HHH----HHHHHHh----hcCCcEEEEecCCCCChHH
Confidence 111 0111111 1246889999999999965
No 258
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=5.6e-13 Score=131.28 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCCeE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~~~ 345 (666)
.+|+|+|+.|+|||||+++|+... .. .+..+.+.... ....+......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 50 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FP-----------------------------EEYHPTVFENYVTDCRVDGKPVQ 50 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CC-----------------------------cccCCcccceEEEEEEECCEEEE
Confidence 479999999999999999997321 00 00011111111 11112222345
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc-
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK- 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~- 422 (666)
+.+|||||+..|.......+..+|++|+|+|.+... .|+.+ ....+..++. -.+| +|+|.||+|+.....
T Consensus 51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s~~~~---~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~ 123 (187)
T cd04129 51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---SLENV---RTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEECCCChhccccchhhcCCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHHhCCCCC-EEEEeeChhhhhCccc
Confidence 789999999887654445678899999999997642 11111 1112222222 2456 999999999864211
Q ss_pred ------hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 ------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 ------e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.++.. ..+...+.+.++. .+++++||++|.|+.+
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDD 163 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHH
Confidence 11111 1223334444442 3689999999999976
No 259
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.46 E-value=2.2e-13 Score=121.66 Aligned_cols=82 Identities=26% Similarity=0.343 Sum_probs=78.6
Q ss_pred eeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeecc
Q 005973 585 ATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYYF 664 (666)
Q Consensus 585 ~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~~ 664 (666)
++.|+|+++||+++.||.+|+++.+|+|+.+++|+|.+|.+.+|.+|++.++++|++|++|+.|.|+|++.+|||+|+|+
T Consensus 3 ~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~~ 82 (104)
T cd03705 3 AESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETFS 82 (104)
T ss_pred ccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEcc
Confidence 57899999999988999999999999999999999999999999999998888899999999999999999999999998
Q ss_pred CC
Q 005973 665 VC 666 (666)
Q Consensus 665 ~~ 666 (666)
+|
T Consensus 83 ~~ 84 (104)
T cd03705 83 EY 84 (104)
T ss_pred cC
Confidence 75
No 260
>PRK09866 hypothetical protein; Provisional
Probab=99.46 E-value=3.5e-13 Score=151.01 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=75.7
Q ss_pred CeEEEEEeCCCccc-----hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCC--CcEEEEEecc
Q 005973 343 NYHVVVLDSPGHKD-----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKM 415 (666)
Q Consensus 343 ~~~i~liDTPGh~~-----f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi--p~iIVViNK~ 415 (666)
..+++|+||||... +...|...+..+|++|+|||+..+. .....+.+..++..+. | +|+|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~--------s~~DeeIlk~Lkk~~K~~P-VILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK--------SISDEEVREAILAVGQSVP-LYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC--------ChhHHHHHHHHHhcCCCCC-EEEEEEcc
Confidence 46899999999533 4556777889999999999998752 3455667777777773 6 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+.+......+.+...+...+....+ ....++||||++|.|+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANR 343 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHH
Confidence 98742222233444444444433333 234689999999999965
No 261
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.45 E-value=5.4e-13 Score=132.77 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=66.7
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv 418 (666)
.....+.||||+|++++. ...+++.+|++|||+|.+.... |+.+. ...+..++. -++| +|+|.||+|+.
T Consensus 63 ~~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~S---f~~~~---~~w~~~i~~~~~~~p-iilvgNK~DL~ 133 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNS---LRNVK---TMWYPEIRHFCPRVP-VILVGCKLDLR 133 (195)
T ss_pred CEEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhH---HHHHH---HHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 345678899999987643 2336788999999999987521 11110 111222222 2456 99999999986
Q ss_pred cccch---------------hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKD---------------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e---------------~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... ......++...+.+.++ ++++.+||++|+|+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e 186 (195)
T cd01873 134 YADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKD 186 (195)
T ss_pred ccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHH
Confidence 42100 01112334455555555 4789999999999976
No 262
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.4e-13 Score=134.21 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=101.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--e
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--D 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~ 340 (666)
-.-.++|++||.+++|||-|+.|++.. .+..+....|-+......+ +
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrn-------------------------------EF~~~SksTIGvef~t~t~~vd 59 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRN-------------------------------EFSLESKSTIGVEFATRTVNVD 59 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhccc-------------------------------ccCcccccceeEEEEeeceeec
Confidence 345689999999999999999999833 2222333334444444444 4
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDA 417 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dl 417 (666)
......+||||+|+++|..-+..+++.|-++|||+|.+...... .....|..|+.+ .++ +++|.||+||
T Consensus 60 ~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfe-------nv~rWL~ELRdhad~niv-imLvGNK~DL 131 (222)
T KOG0087|consen 60 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFE-------NVERWLKELRDHADSNIV-IMLVGNKSDL 131 (222)
T ss_pred CcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHH-------HHHHHHHHHHhcCCCCeE-EEEeecchhh
Confidence 44566779999999999988899999999999999998642211 111222333333 455 7899999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
..-- ..-.++-..+.+..+ ..|+.+||+.+.|+.+.
T Consensus 132 ~~lr----aV~te~~k~~Ae~~~-----l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 132 NHLR----AVPTEDGKAFAEKEG-----LFFLETSALDATNVEKA 167 (222)
T ss_pred hhcc----ccchhhhHhHHHhcC-----ceEEEecccccccHHHH
Confidence 7411 111222333333323 57899999999999763
No 263
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.44 E-value=1.2e-12 Score=122.69 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=103.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|.|+|.-|||||||+++|++... ... .-|+-.....+..+++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~------------------------------~~i----~pt~gf~Iktl~~~~~ 60 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT------------------------------DTI----SPTLGFQIKTLEYKGY 60 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc------------------------------ccc----CCccceeeEEEEecce
Confidence 478999999999999999999984321 011 1134444456677899
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH----HHHHHcCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA----QLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l----~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
.+++||..|+..+..-+..++..+|++|+|||.+... . ..++..++ .--+..|.| ++|+.||.|+.+.
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r----~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---R----MQECKQELTELLVEERLAGAP-LLVLANKQDLPGA 132 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---H----HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc
Confidence 9999999999999999999999999999999997642 1 12222222 222335767 8999999999842
Q ss_pred cchhhhHHH--HHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIK--VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~--~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
-..+.+. -.+..+++. ..++++-+||.+|+++.+
T Consensus 133 --l~~~~i~~~~~L~~l~ks-----~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 133 --LSLEEISKALDLEELAKS-----HHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred --cCHHHHHHhhCHHHhccc-----cCceEEEEeccccccHHH
Confidence 1122222 233444333 456889999999999865
No 264
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.6e-13 Score=122.22 Aligned_cols=151 Identities=19% Similarity=0.264 Sum_probs=100.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.+++.++|+.|.|||.|+.+++... | .| ...+.-|+.+-.....+..+..+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~k--------------------------f-kD--dssHTiGveFgSrIinVGgK~vK 59 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENK--------------------------F-KD--DSSHTIGVEFGSRIVNVGGKTVK 59 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhh--------------------------h-cc--cccceeeeeecceeeeecCcEEE
Confidence 5789999999999999999998321 0 01 11122233333333344455677
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCc--EEEEEeccccccccch
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYSKD 423 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~--iIVViNK~Dlv~~~~e 423 (666)
+.||||+|+++|..-+..+++.|.+++||+|++.... | ...+ ..+.-++.+.-|+ +|++.||-|+....+
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---f---naLt-nWL~DaR~lAs~nIvviL~GnKkDL~~~R~- 131 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---F---NALT-NWLTDARTLASPNIVVILCGNKKDLDPERE- 131 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---H---HHHH-HHHHHHHhhCCCcEEEEEeCChhhcChhhh-
Confidence 8899999999999999999999999999999986421 1 1222 2233445555554 466779999964222
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....+...+.++ ..+.+..+||++|+|+++
T Consensus 132 ---VtflEAs~FaqE-----nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 132 ---VTFLEASRFAQE-----NELMFLETSALTGENVEE 161 (214)
T ss_pred ---hhHHHHHhhhcc-----cceeeeeecccccccHHH
Confidence 222334444433 235679999999999976
No 265
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.43 E-value=2e-12 Score=128.76 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=89.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-CCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~~ 344 (666)
+++|+|+|.+|+|||||+|+|++..... . +.. ... ...+|.... .+.. ...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~-~---------------~~~----~~~------~~~~t~~~~--~~~~~~~~ 52 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEE-E---------------GAA----PTG------VVETTMKRT--PYPHPKFP 52 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCC-C---------------Ccc----ccC------ccccccCce--eeecCCCC
Confidence 3689999999999999999998531100 0 000 000 001121111 1111 234
Q ss_pred EEEEEeCCCccchH---HHH--HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 345 HVVVLDSPGHKDFV---PNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 345 ~i~liDTPGh~~f~---~~~--~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.+.+|||||..+.. ... ...+..+|++|+|.+.. +.......+..++..+.| +++|+||+|+..
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 68999999964321 111 12356789988886542 234555667777778887 999999999864
Q ss_pred ccc-----------hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecc--cCCCc
Q 005973 420 YSK-----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL--ENQNL 459 (666)
Q Consensus 420 ~~~-----------e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~--tG~nI 459 (666)
..+ .-++.+.+.+...+...+. ...+++.+|+. .+.|+
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~--~~p~v~~vS~~~~~~~~~ 172 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV--SEPPVFLVSNFDPSDYDF 172 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCC--CCCCEEEEeCCChhhcCh
Confidence 222 1134445555555544343 23478999998 45666
No 266
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.42 E-value=2.8e-12 Score=128.46 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--cCCe
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~~~~ 344 (666)
++|+++|++++|||||+++|......- ....++.......+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--------------------------------t~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--------------------------------TVTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--------------------------------ccCcEeecceEEEeecCCCCc
Confidence 369999999999999999998431100 001111122222222 2457
Q ss_pred EEEEEeCCCccchHHHHHHhcccC-CEEEEEEeCCCCccccccccchhHHHHHH-HHHH---H--cCCCcEEEEEecccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR---S--FGVDQLIVAVNKMDA 417 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~a-D~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~---~--lgip~iIVViNK~Dl 417 (666)
.+.|||||||.++...+..++..+ +++|+|||+.... .. + ....+.+ .++. . -++| +++|+||+|+
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~--~~---~-~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl 121 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ--KN---L-KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDL 121 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch--hH---H-HHHHHHHHHHHHHHhhccCCCC-EEEEecchhh
Confidence 799999999999998888888888 9999999998741 00 1 1222222 1111 1 2677 9999999998
Q ss_pred cc
Q 005973 418 VQ 419 (666)
Q Consensus 418 v~ 419 (666)
..
T Consensus 122 ~~ 123 (203)
T cd04105 122 FT 123 (203)
T ss_pred cc
Confidence 75
No 267
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.3e-12 Score=120.19 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=100.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEE--E--EEEEEE
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM--T--VAVAYF 339 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTi--d--~~~~~~ 339 (666)
+-.++|+++|..|+|||.|+++++.. ... ...|-|+ + +....+
T Consensus 5 kflfkivlvgnagvgktclvrrftqg--lfp-------------------------------pgqgatigvdfmiktvev 51 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG--LFP-------------------------------PGQGATIGVDFMIKTVEV 51 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc--CCC-------------------------------CCCCceeeeeEEEEEEEE
Confidence 34689999999999999999999832 111 1123333 3 333445
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
+.++..+.||||+|+++|..-+.++++.|+++|||.|.+... .|+-+-...+|.-+++.. .+- -|+|.||+|+.+
T Consensus 52 ~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqp---sfdclpewlreie~yan~-kvl-kilvgnk~d~~d 126 (213)
T KOG0095|consen 52 NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP---SFDCLPEWLREIEQYANN-KVL-KILVGNKIDLAD 126 (213)
T ss_pred CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCc---chhhhHHHHHHHHHHhhc-ceE-EEeeccccchhh
Confidence 556778899999999999999999999999999999998643 333332333443333332 222 388999999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .++.+++.+-+.... ..-|+.+||+..+|++.
T Consensus 127 r-----revp~qigeefs~~q----dmyfletsakea~nve~ 159 (213)
T KOG0095|consen 127 R-----REVPQQIGEEFSEAQ----DMYFLETSAKEADNVEK 159 (213)
T ss_pred h-----hhhhHHHHHHHHHhh----hhhhhhhcccchhhHHH
Confidence 2 123333333332222 23568999999999966
No 268
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.40 E-value=6.5e-12 Score=126.50 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=92.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--e
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--D 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~ 340 (666)
.+..++|+++|+.|+|||||+++++.. .. ..+..+.+..+.....+ .
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~--~~-----------------------------~~~~~~t~~~~~~~~~~~~~ 54 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTG--EF-----------------------------EKKYIPTLGVEVHPLKFYTN 54 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhC--CC-----------------------------CCCCCCccceEEEEEEEEEC
Confidence 445689999999999999999887732 11 01111112222222222 3
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH-H-cCCCcEEEEEeccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-S-FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~-lgip~iIVViNK~Dlv 418 (666)
.....+.+|||||+.+|.......+..++++|+|+|.+.... +. .....+..+. . -.+| +++|+||+|+.
T Consensus 55 ~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~ 126 (215)
T PTZ00132 55 CGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK----NVPNWHRDIVRVCENIP-IVLVGNKVDVK 126 (215)
T ss_pred CeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhCCCCC-EEEEEECccCc
Confidence 355778899999999987777777888999999999987531 11 1111111111 1 2455 88999999986
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+. .... +...+.+.. .+.++++||++|.|+.+
T Consensus 127 ~~--~~~~----~~~~~~~~~-----~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 127 DR--QVKA----RQITFHRKK-----NLQYYDISAKSNYNFEK 158 (215)
T ss_pred cc--cCCH----HHHHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 32 1111 111223222 24689999999999965
No 269
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=132.33 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=103.4
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE
Q 005973 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 260 ~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~ 339 (666)
+.-....+.|+|.|++|+|||||++.|+....-|... +-+|-.+...+|
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y-------------------------------PFTTK~i~vGhf 210 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY-------------------------------PFTTKGIHVGHF 210 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-------------------------------CccccceeEeee
Confidence 3344467889999999999999999999765544333 345667777888
Q ss_pred ecCCeEEEEEeCCCccc--------hHHHHHHhcc-cCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005973 340 DSKNYHVVVLDSPGHKD--------FVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~--------f~~~~~~~~~-~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (666)
+.+..++++|||||.-+ .-.+.+.+++ .++++|+++|.+... ++ .+..|..-.-.+-..+..| +++
T Consensus 211 e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy-~lE~Q~~L~~eIk~~f~~p-~v~ 285 (346)
T COG1084 211 ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GY-SLEEQISLLEEIKELFKAP-IVV 285 (346)
T ss_pred ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CC-CHHHHHHHHHHHHHhcCCC-eEE
Confidence 98899999999999422 2233344443 388999999998632 22 2344443333444445655 999
Q ss_pred EEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+||+|..+ .+.++++...+... +. ..++.+++..+.+++.
T Consensus 286 V~nK~D~~~--~e~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 286 VINKIDIAD--EEKLEEIEASVLEE----GG----EEPLKISATKGCGLDK 326 (346)
T ss_pred EEecccccc--hhHHHHHHHHHHhh----cc----ccccceeeeehhhHHH
Confidence 999999984 45555444433222 21 2246678888777754
No 270
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.39 E-value=3.6e-12 Score=127.58 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----- 341 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~----- 341 (666)
++|+++|..++|||||+++|++.. ...+..+.+..+.....+..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~-------------------------------f~~~~~~Tig~~~~~k~~~~~~~~~ 49 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ-------------------------------VLGRPSWTVGCSVDVKHHTYKEGTP 49 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-------------------------------CCCCCCcceeeeEEEEEEEEcCCCC
Confidence 479999999999999999998421 01111122222222222222
Q ss_pred --CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH------------------H
Q 005973 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI------------------R 401 (666)
Q Consensus 342 --~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll------------------~ 401 (666)
....+.||||+|+++|.......++.+|++|+|+|.+...... .+.....+..... .
T Consensus 50 ~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~ 126 (202)
T cd04102 50 EEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFG 126 (202)
T ss_pred CCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHH---HHHHHHHHHHHhhccccccccccccccccccC
Confidence 3457889999999999888888899999999999998763222 1111111111110 0
Q ss_pred HcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 402 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 402 ~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..++| +|+|.||+|+.+......+........+.++++. +.|.+++.....+..
T Consensus 127 ~~~~P-iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~ 180 (202)
T cd04102 127 GNQIP-LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAA 180 (202)
T ss_pred CCCce-EEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccC
Confidence 12466 9999999999742111111122223334444554 457778877776654
No 271
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.4e-13 Score=142.36 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=104.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
-+..++|+|+|++|+|||||+|+|+.....|. ...+|+|.|.....|+.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIV------------------------------Spv~GTTRDaiea~v~~~ 314 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIV------------------------------SPVPGTTRDAIEAQVTVN 314 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEe------------------------------CCCCCcchhhheeEeecC
Confidence 34568999999999999999999996644443 345899999999999999
Q ss_pred CeEEEEEeCCCccc---------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCC--------
Q 005973 343 NYHVVVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-------- 405 (666)
Q Consensus 343 ~~~i~liDTPGh~~---------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi-------- 405 (666)
++.+.|+||+|..+ -+......+.+||++++||||....++. ......++...+.
T Consensus 315 G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s--------d~~i~~~l~~~~~g~~~~~~~ 386 (531)
T KOG1191|consen 315 GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES--------DLKIARILETEGVGLVVIVNK 386 (531)
T ss_pred CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc--------chHHHHHHHHhccceEEEecc
Confidence 99999999999655 1222344567799999999997764432 2233333333221
Q ss_pred ---CcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcE-EEeecccCCCccc
Q 005973 406 ---DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW-IPLSALENQNLVT 461 (666)
Q Consensus 406 ---p~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~i-IpvSA~tG~nI~e 461 (666)
.++|+++||.|+...-.+ +......+....+. ...++ +.+|+++++|+..
T Consensus 387 ~~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~~~~--~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 387 MEKQRIILVANKSDLVSKIPE----MTKIPVVYPSAEGR--SVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred ccccceEEEechhhccCcccc----ccCCceeccccccC--cccceEEEeeechhhhHHH
Confidence 358899999998742111 11111111211111 22344 4499999999966
No 272
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.37 E-value=1.9e-12 Score=114.80 Aligned_cols=79 Identities=37% Similarity=0.528 Sum_probs=71.1
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005973 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSF 660 (666)
Q Consensus 581 p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~v 660 (666)
|+..++.|+|++++|+++.||..||++.||+|+.+++|+|.+|...+| +|+.. |++|++|+.|.|+|++++|+|+
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~v 75 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICV 75 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceee
Confidence 467789999999999999999999999999999999999999999999 66644 9999999999999999999999
Q ss_pred eecc
Q 005973 661 QYYF 664 (666)
Q Consensus 661 e~~~ 664 (666)
|+|.
T Consensus 76 e~~~ 79 (99)
T PF03143_consen 76 EPFS 79 (99)
T ss_dssp TTTT
T ss_pred ecCc
Confidence 9985
No 273
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.37 E-value=2.8e-12 Score=114.49 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=74.7
Q ss_pred eeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeec
Q 005973 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYY 663 (666)
Q Consensus 584 ~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~ 663 (666)
.+..|.|+++|++ ..||.+|+++.+|+|+.+++|+|.+|.+++|.+|++. .+|++|+.|+.|.|+|++++|||+|+|
T Consensus 2 ~~~~f~a~i~~l~-~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d~~ 78 (103)
T cd04095 2 VSDQFAATLVWMD-EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFDPY 78 (103)
T ss_pred ccceeeEEEEEec-CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEecch
Confidence 3678999999999 5699999999999999999999999999999999983 489999999999999999999999999
Q ss_pred cCC
Q 005973 664 FVC 666 (666)
Q Consensus 664 ~~~ 666 (666)
++|
T Consensus 79 ~~~ 81 (103)
T cd04095 79 REN 81 (103)
T ss_pred hhC
Confidence 875
No 274
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.36 E-value=6.2e-12 Score=125.00 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=88.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|.+|+|||||+|.|++....... ...++.|...........+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-----------------------------LSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-----------------------------cCCCCcccccceeeEEECCeEE
Confidence 47999999999999999999965332111 0124667776666677788999
Q ss_pred EEEeCCCccch-------HHHHHH----hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cC---CCcEEEE
Q 005973 347 VVLDSPGHKDF-------VPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIVA 411 (666)
Q Consensus 347 ~liDTPGh~~f-------~~~~~~----~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lg---ip~iIVV 411 (666)
+||||||..+. ...+.. ....+|++|+|+++.+ . .......+..++. +| .+++|+|
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~--------t~~d~~~l~~l~~~fg~~~~~~~ivv 122 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-F--------TEEEEQAVETLQELFGEKVLDHTIVL 122 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-c--------CHHHHHHHHHHHHHhChHhHhcEEEE
Confidence 99999996543 222222 2355899999999876 1 2345555655554 34 2458999
Q ss_pred EeccccccccchhhhH----HHHHHhhhhhhcC
Q 005973 412 VNKMDAVQYSKDRFDS----IKVQLGTFLRSCG 440 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~----i~~el~~~l~~~~ 440 (666)
+|+.|..... .++. ....+..+++.++
T Consensus 123 ~T~~d~l~~~--~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 123 FTRGDDLEGG--TLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred EECccccCCC--cHHHHHHhccHHHHHHHHHhC
Confidence 9999987532 2222 2345666666654
No 275
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.7e-12 Score=119.40 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=103.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.+++.|+|...+|||+|+-+.+...-.+ ++ -+.-|+...+...+-.-....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~----------------------af-------vsTvGidFKvKTvyr~~kRik 71 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS----------------------AF-------VSTVGIDFKVKTVYRSDKRIK 71 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc----------------------ce-------eeeeeeeEEEeEeeecccEEE
Confidence 4589999999999999998887431111 00 112244444443333334567
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhh
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~ 425 (666)
+.+|||.|+++|...+-.++++|++.||++|.++.......+.+..| +......+++ +|+|.||||+.+ +|.
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tq----Iktysw~naq-vilvgnKCDmd~---eRv 143 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQ----IKTYSWDNAQ-VILVGNKCDMDS---ERV 143 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHH----heeeeccCce-EEEEecccCCcc---cee
Confidence 88999999999999999999999999999999885433222222111 2222445677 999999999863 232
Q ss_pred hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 426 ~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
- ..+....+..++|| .|+++||+.+.|+.+
T Consensus 144 i-s~e~g~~l~~~LGf-----efFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 144 I-SHERGRQLADQLGF-----EFFETSAKENINVKQ 173 (193)
T ss_pred e-eHHHHHHHHHHhCh-----HHhhhcccccccHHH
Confidence 1 12344556666776 679999999999966
No 276
>PLN00023 GTP-binding protein; Provisional
Probab=99.32 E-value=2.5e-11 Score=128.26 Aligned_cols=144 Identities=20% Similarity=0.201 Sum_probs=88.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
.....++|+|+|..++|||||+++|+...-. ......-|.+.......+..
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~-----------------------------~~~~pTIG~d~~ik~I~~~~ 67 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSI-----------------------------ARPPQTIGCTVGVKHITYGS 67 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcc-----------------------------cccCCceeeeEEEEEEEECC
Confidence 3456789999999999999999999832100 00011112222222223321
Q ss_pred -------------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-----
Q 005973 342 -------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----- 403 (666)
Q Consensus 342 -------------~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----- 403 (666)
....+.||||+|+++|...+..+++.+|++|+|+|.+..... .. ....+..+...
T Consensus 68 ~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SF---en----L~kWl~eI~~~~~~s~ 140 (334)
T PLN00023 68 PGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTK---TS----LQKWASEVAATGTFSA 140 (334)
T ss_pred cccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHH---HH----HHHHHHHHHHhccccc
Confidence 235688999999999998888889999999999999874322 11 11222222222
Q ss_pred ----------CCCcEEEEEeccccccccchhh--hHHHHHHhhhhhhcCcC
Q 005973 404 ----------GVDQLIVAVNKMDAVQYSKDRF--DSIKVQLGTFLRSCGFK 442 (666)
Q Consensus 404 ----------gip~iIVViNK~Dlv~~~~e~~--~~i~~el~~~l~~~~~~ 442 (666)
.+| +|||.||+|+......+. ....++...++++.++-
T Consensus 141 p~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 141 PLGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 355 999999999964211011 11345566666666653
No 277
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=4.5e-12 Score=116.66 Aligned_cols=148 Identities=21% Similarity=0.187 Sum_probs=102.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~ 343 (666)
.++..|||.+++|||+|+-++... .+.......+.+|...+.++. ..
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd-------------------------------tFs~sYitTiGvDfkirTv~i~G~~ 56 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD-------------------------------TFSGSYITTIGVDFKIRTVDINGDR 56 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc-------------------------------ccccceEEEeeeeEEEEEeecCCcE
Confidence 466789999999999999888722 112222233445555555555 44
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~ 421 (666)
..+.||||+|+++|...+..+.+..+++|+|+|.+.++... .....++-++.. .+| -|+|.||.|..+
T Consensus 57 VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~-------Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~-- 126 (198)
T KOG0079|consen 57 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFN-------NVKRWLEEIRNNCDSVP-KVLVGNKNDDPE-- 126 (198)
T ss_pred EEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhH-------hHHHHHHHHHhcCcccc-ceecccCCCCcc--
Confidence 66889999999999999999999999999999999875332 222333333321 345 589999999863
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.....++...+....+ +.++.+||+..+|++.
T Consensus 127 --RrvV~t~dAr~~A~~mg-----ie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 127 --RRVVDTEDARAFALQMG-----IELFETSAKENENVEA 159 (198)
T ss_pred --ceeeehHHHHHHHHhcC-----chheehhhhhcccchH
Confidence 22223345555655555 4679999999999965
No 278
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1e-11 Score=129.42 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=98.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe-cCCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~-~~~~ 344 (666)
.--|++||.+|||||||+++++.....|.... -+|+.+....+. ....
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYp-------------------------------FTTL~PnLGvV~~~~~~ 207 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYP-------------------------------FTTLVPNLGVVRVDGGE 207 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCc-------------------------------cccccCcccEEEecCCC
Confidence 34699999999999999999997766554333 346554444444 3567
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViNK~D 416 (666)
.|++-|.||..+ +--..++.+.++-++++|||++...-....+.+.....|.-.+-..+ +.| .|||+||||
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD 286 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVLNKID 286 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEEeccC
Confidence 799999999543 33445566677899999999985421111111112222222232223 444 799999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
++. +++.++...+.+.... ++ ..+++|||.+++|+.+
T Consensus 287 ~~~-~~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~ 323 (369)
T COG0536 287 LPL-DEEELEELKKALAEAL---GW----EVFYLISALTREGLDE 323 (369)
T ss_pred CCc-CHHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHH
Confidence 653 3555555555554433 22 1223499999999976
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.29 E-value=7.7e-12 Score=126.25 Aligned_cols=193 Identities=18% Similarity=0.250 Sum_probs=110.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccch-------h-hhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQ-------K-QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA 335 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~-------~-~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~ 335 (666)
.++..|+++|..|+||||++.||..+...-.. + -+....-.+..+-|...+|.-+|.........||+....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45678999999999999999999877432100 0 000000011222233334444444444444455543211
Q ss_pred EE--EE-------e--cCCeEEEEEeCCCccchHHHHHHhc--------ccCCEEEEEEeCCCCccccccccchhHHHHH
Q 005973 336 VA--YF-------D--SKNYHVVVLDSPGHKDFVPNMISGA--------TQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (666)
Q Consensus 336 ~~--~~-------~--~~~~~i~liDTPGh~~f~~~~~~~~--------~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~ 396 (666)
.. .| + .....++||||||+.+.+.+..+|. ...-++++|||..+...... ++......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~t---FMSNMlYA 173 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTT---FMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchh---HHHHHHHH
Confidence 11 01 1 1346689999999877543332222 33678999999866432222 35666777
Q ss_pred HHHHHHcCCCcEEEEEecccccccc--------chhhhHHHHH-----Hhhhhhhc-----CcCCCCCcEEEeecccCCC
Q 005973 397 AQLIRSFGVDQLIVAVNKMDAVQYS--------KDRFDSIKVQ-----LGTFLRSC-----GFKDASLTWIPLSALENQN 458 (666)
Q Consensus 397 l~ll~~lgip~iIVViNK~Dlv~~~--------~e~~~~i~~e-----l~~~l~~~-----~~~~~~i~iIpvSA~tG~n 458 (666)
..++....+| +|||+||+|+.+.. .+.|++..++ +..+...+ .|- .++..+.+|+.+|.|
T Consensus 174 cSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY-~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 174 CSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY-RSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH-hhCceEEEecccCCc
Confidence 7888888999 99999999998522 2233332221 00111111 111 346789999999999
Q ss_pred ccc
Q 005973 459 LVT 461 (666)
Q Consensus 459 I~e 461 (666)
..+
T Consensus 252 ~dd 254 (366)
T KOG1532|consen 252 FDD 254 (366)
T ss_pred HHH
Confidence 976
No 280
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.9e-11 Score=109.52 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=100.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--cC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SK 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~~ 342 (666)
-.++..|||..|+|||.|+.+++...- |... . ..+.+..+.+.++ ..
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf---------------------------madc--p--htigvefgtriievsgq 58 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF---------------------------MADC--P--HTIGVEFGTRIIEVSGQ 58 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH---------------------------hhcC--C--cccceecceeEEEecCc
Confidence 467899999999999999999984311 1111 1 2223333444444 45
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH----HHHHHcCCCc--EEEEEeccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA----QLIRSFGVDQ--LIVAVNKMD 416 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l----~ll~~lgip~--iIVViNK~D 416 (666)
...+.||||+|+++|...+.++++.|.++++|.|.+.. -+..|+ .-++.+--|+ |+++.||.|
T Consensus 59 kiklqiwdtagqerfravtrsyyrgaagalmvyditrr-----------stynhlsswl~dar~ltnpnt~i~lignkad 127 (215)
T KOG0097|consen 59 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-----------STYNHLSSWLTDARNLTNPNTVIFLIGNKAD 127 (215)
T ss_pred EEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh-----------hhhhhHHHHHhhhhccCCCceEEEEecchhh
Confidence 56788999999999999999999999999999999864 233333 2233444443 577789999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.......+ ++.+.+....| +.|+.+||++|+|+++
T Consensus 128 le~qrdv~y----eeak~faeeng-----l~fle~saktg~nved 163 (215)
T KOG0097|consen 128 LESQRDVTY----EEAKEFAEENG-----LMFLEASAKTGQNVED 163 (215)
T ss_pred hhhcccCcH----HHHHHHHhhcC-----eEEEEecccccCcHHH
Confidence 874322223 44455655555 4789999999999965
No 281
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.28 E-value=2.4e-12 Score=132.52 Aligned_cols=168 Identities=18% Similarity=0.195 Sum_probs=114.3
Q ss_pred cccccccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCc
Q 005973 233 GNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGS 312 (666)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~ 312 (666)
.+.++..++++++....++. . +..+.....+.|+++|++|+|||||+++|+.. .....++++
T Consensus 149 lr~kea~lrKeL~~vrrkr~-~---r~gr~~~s~pviavVGYTNaGKsTLikaLT~A-al~p~drLF------------- 210 (410)
T KOG0410|consen 149 LRIKEAQLRKELQRVRRKRQ-R---RVGREGESSPVIAVVGYTNAGKSTLIKALTKA-ALYPNDRLF------------- 210 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHh-h---hhccccCCCceEEEEeecCccHHHHHHHHHhh-hcCccchhh-------------
Confidence 34556667777776666662 1 22333446788999999999999999999933 322222222
Q ss_pred chhhhcccccccccccCeEEEEEEEEEec-CCeEEEEEeCCCccch--------HHHHHHhcccCCEEEEEEeCCCCccc
Q 005973 313 FAYAWALDESAEERERGITMTVAVAYFDS-KNYHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFE 383 (666)
Q Consensus 313 ~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~~~i~liDTPGh~~f--------~~~~~~~~~~aD~aIlVVDa~~g~~e 383 (666)
-|.|+....... .+..+.|.||-|+..- +..++.....+|++|+|+|.+++.
T Consensus 211 -----------------ATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~-- 271 (410)
T KOG0410|consen 211 -----------------ATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPN-- 271 (410)
T ss_pred -----------------eeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCcc--
Confidence 255555544444 4567889999996543 444555667799999999999986
Q ss_pred cccccchhHHHHHHHHHHHcCCC------cEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCC
Q 005973 384 VGMNTAKGLTREHAQLIRSFGVD------QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (666)
Q Consensus 384 ~~~~~~~~qt~e~l~ll~~lgip------~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~ 457 (666)
+..|-...+..++.+|+| .+|=|=||+|......+. .++ ..+++||++|+
T Consensus 272 -----ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------------E~n-~~v~isaltgd 327 (410)
T KOG0410|consen 272 -----AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------------EKN-LDVGISALTGD 327 (410)
T ss_pred -----HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc------------------ccC-CccccccccCc
Confidence 456888888999999997 356677888875311100 011 14899999999
Q ss_pred Cccc
Q 005973 458 NLVT 461 (666)
Q Consensus 458 nI~e 461 (666)
|+.+
T Consensus 328 gl~e 331 (410)
T KOG0410|consen 328 GLEE 331 (410)
T ss_pred cHHH
Confidence 9966
No 282
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.27 E-value=9.7e-11 Score=117.65 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=97.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--C
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~ 343 (666)
.++|+++|..|+|||||+++|.+... ..+..+.+........+... .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEF-------------------------------PEGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcC-------------------------------cccCCCceeeeeEEEEEEeCCCE
Confidence 48999999999999999999994311 11222333323222222222 5
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC---CCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg---ip~iIVViNK~Dlv~~ 420 (666)
..+.+|||+|+.+|...+..+...++++++|+|...... ......+....+..+. .+ +|+|.||+|+...
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~------~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES------SDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh------hhHHHHHHHHHHHHhCCCCce-EEEEecccccccc
Confidence 668899999999999999999999999999999886210 1223333343444443 66 9999999999864
Q ss_pred cchhhhHHHHHH---------hhhhhhcCcCCCCCcEEEeecc--cCCCccc
Q 005973 421 SKDRFDSIKVQL---------GTFLRSCGFKDASLTWIPLSAL--ENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el---------~~~l~~~~~~~~~i~iIpvSA~--tG~nI~e 461 (666)
..... .+...+ ......... ....++.+|++ ++.|+.+
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~v~~ 175 (219)
T COG1100 127 QSSSE-EILNQLNREVVLLVLAPKAVLPEV--ANPALLETSAKSLTGPNVNE 175 (219)
T ss_pred hhHHH-HHHhhhhcCcchhhhHhHHhhhhh--cccceeEeecccCCCcCHHH
Confidence 32211 111110 000000000 12237899999 8999865
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=9.5e-11 Score=122.90 Aligned_cols=143 Identities=20% Similarity=0.280 Sum_probs=89.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-- 343 (666)
.++|+++|++|+|||||+|+|++......... .+.......+.+++......+..++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~---------------------~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP---------------------PDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC---------------------CCccccccCCceEEEEEEEEEEECCEE
Confidence 57999999999999999999985422111000 0001112233344454445555555
Q ss_pred eEEEEEeCCCccchHH---------------------HHHH-----hc--ccCCEEEEEEeCCCCccccccccchhHHHH
Q 005973 344 YHVVVLDSPGHKDFVP---------------------NMIS-----GA--TQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~---------------------~~~~-----~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e 395 (666)
..++||||||+.++.. .... .+ ..+|++|+++++.... +.....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-------l~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-------LKPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-------CCHHHHH
Confidence 5689999999654321 1111 11 1378999999987421 3345567
Q ss_pred HHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcC
Q 005973 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440 (666)
Q Consensus 396 ~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~ 440 (666)
.+..+.. ++| +|+|+||+|+.. .+.+...++.+.+.+...+
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTLT--PEELKEFKQRIMEDIEEHN 176 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcCC--HHHHHHHHHHHHHHHHHcC
Confidence 7777765 677 999999999974 3445566777777776655
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=1.2e-11 Score=112.00 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=71.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+|+|..|+|||||+++|++.... .........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6999999999999999999954222 0001111123344433444444455589
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-----CCCcEEEEEeccc
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMD 416 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVViNK~D 416 (666)
|||++|+..+.......+..+|++|+|+|+++... + .+..+.+..+..+ .+| +|||.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~----~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L----EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H----HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---H----HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998877654445888999999999987521 1 1222222222222 366 999999998
No 285
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=2.5e-11 Score=123.47 Aligned_cols=154 Identities=17% Similarity=0.230 Sum_probs=97.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE-Eec
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY-FDS 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~-~~~ 341 (666)
.+.++||.++|.+|+|||||+|+|......-..+ -|++.+..... ...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-------------------------------vg~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-------------------------------VGVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeee-------------------------------cccCCCchhhHHhhc
Confidence 4568899999999999999999999432211100 12222221111 123
Q ss_pred CCeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCC-CcEEEEEe
Q 005973 342 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVN 413 (666)
Q Consensus 342 ~~~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi-p~iIVViN 413 (666)
....++||||||..+ +....+..+...|++++++++.... .+.....+.-+...+. .++|+++|
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra--------L~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA--------LGTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc--------ccCCHHHHHHHHHhccCceeEEEEe
Confidence 557899999999655 7788888999999999999998763 1223333333333333 45999999
Q ss_pred cccccc----cc-------chhhhHHH---HHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQ----YS-------KDRFDSIK---VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~----~~-------~e~~~~i~---~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+|+.. |+ ....+.+. +.+.++++. --|++.+|+..++|+..
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~ 212 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKE 212 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHH
Confidence 999763 22 11112222 233333332 24788888899999955
No 286
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=113.74 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=99.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec---C
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---K 342 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~---~ 342 (666)
.+++++||..-+|||+|+..++...- .+-..+.+.+|.-.+.++. .
T Consensus 8 qfrlivigdstvgkssll~~ft~gkf-------------------------------aelsdptvgvdffarlie~~pg~ 56 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKF-------------------------------AELSDPTVGVDFFARLIELRPGY 56 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcc-------------------------------cccCCCccchHHHHHHHhcCCCc
Confidence 47899999999999999999983210 1111122222222222222 2
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCc---EEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ---LIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~---iIVViNK~Dlv~ 419 (666)
...+.||||+|+++|..-+.++++.+-++++|+|.++... |+. ...++.......+-|. +.+|..|+|+..
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~s---feh---v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRES---FEH---VENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhh---HHH---HHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 3468899999999999999999999999999999987421 211 1111222222333232 567889999973
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
. .+...++...+.+.+|+ .||.+||++|.|+++.
T Consensus 131 q----RqVt~EEaEklAa~hgM-----~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 131 Q----RQVTAEEAEKLAASHGM-----AFVETSAKNGCNVEEA 164 (213)
T ss_pred h----ccccHHHHHHHHHhcCc-----eEEEecccCCCcHHHH
Confidence 2 22234555666666664 7899999999999874
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.23 E-value=5.8e-11 Score=122.98 Aligned_cols=87 Identities=24% Similarity=0.276 Sum_probs=68.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...-+|++||.+++|||||++.|++....+... .-+|....-..+++++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y-------------------------------~FTTl~~VPG~l~Y~g 109 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADY-------------------------------PFTTLEPVPGMLEYKG 109 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcccccc-------------------------------CceecccccceEeecC
Confidence 345689999999999999999999653333222 3457777778889999
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCc
Q 005973 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGS 381 (666)
Q Consensus 344 ~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~ 381 (666)
.+++|+|+||... -.+..++.++.||++|+|+|+..+.
T Consensus 110 a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 110 AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 9999999999533 2355677889999999999998654
No 288
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.22 E-value=5.9e-11 Score=105.27 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=74.2
Q ss_pred eeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeecc
Q 005973 585 ATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYYF 664 (666)
Q Consensus 585 ~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~~ 664 (666)
+.+|+|++.++.++.||..|+++.+|+|+.+++|+|..|.+.+|.++ ..+++|++|++|+.|.|+|++.+|+|+|+|.
T Consensus 3 ~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~~ 80 (102)
T cd01513 3 VDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALETFS 80 (102)
T ss_pred ccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEEEhh
Confidence 57899999999999999999999999999999999999999999874 3467899999999999999999999999998
Q ss_pred CC
Q 005973 665 VC 666 (666)
Q Consensus 665 ~~ 666 (666)
++
T Consensus 81 ~~ 82 (102)
T cd01513 81 EN 82 (102)
T ss_pred hC
Confidence 65
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.18 E-value=8.8e-11 Score=114.80 Aligned_cols=111 Identities=24% Similarity=0.356 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE-E-ecCC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY-F-DSKN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~-~-~~~~ 343 (666)
...|.|+|+.|+|||+|+.+|.+....-+ -+.+...... + ...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----------------------------------~tS~e~n~~~~~~~~~~ 48 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----------------------------------VTSMENNIAYNVNNSKG 48 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-------------------------------------SSEEEECCGSSTCG
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe----------------------------------eccccCCceEEeecCCC
Confidence 35699999999999999999995411000 0011111111 1 1245
Q ss_pred eEEEEEeCCCccchHHHHHHh---cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--------cCCCcEEEEE
Q 005973 344 YHVVVLDSPGHKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--------FGVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~---~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--------lgip~iIVVi 412 (666)
..+.|||+|||.++....+.. +..+.++|+|||+... ..+..+..+++.. .+.++++|+.
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac 119 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILIAC 119 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence 679999999999987777665 7889999999999741 1222222222221 1233499999
Q ss_pred ecccccc
Q 005973 413 NKMDAVQ 419 (666)
Q Consensus 413 NK~Dlv~ 419 (666)
||.|+..
T Consensus 120 NK~Dl~~ 126 (181)
T PF09439_consen 120 NKQDLFT 126 (181)
T ss_dssp E-TTSTT
T ss_pred eCccccc
Confidence 9999875
No 290
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.16 E-value=5.5e-10 Score=119.17 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCc----cc---hHHHHHHhcccCCEEEEEEeCCC
Q 005973 343 NYHVVVLDSPGH----KD---FVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 343 ~~~i~liDTPGh----~~---f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
...+.||||||. .+ .....+..++.||++|+|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 357999999996 22 33456777999999999999974
No 291
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-09 Score=119.16 Aligned_cols=235 Identities=23% Similarity=0.327 Sum_probs=151.2
Q ss_pred ccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeE
Q 005973 252 EKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 331 (666)
Q Consensus 252 e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiT 331 (666)
...|..+...+..+++.|+++|++|.|||||+..|.... +.....+...-||
T Consensus 55 hVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~----------------------------tk~ti~~i~GPiT 106 (1077)
T COG5192 55 HVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF----------------------------TKQTIDEIRGPIT 106 (1077)
T ss_pred ccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHH----------------------------HHhhhhccCCceE
Confidence 334566667777788999999999999999999998421 1111111122233
Q ss_pred EEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEE
Q 005973 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (666)
Q Consensus 332 id~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 411 (666)
+ +....++++|+.+| .-+..|+.-+..||++||+||+.-| +...|.+.|.++...|.|+++-|
T Consensus 107 v------vsgK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG--------fEMETmEFLnil~~HGmPrvlgV 169 (1077)
T COG5192 107 V------VSGKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG--------FEMETMEFLNILISHGMPRVLGV 169 (1077)
T ss_pred E------eecceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC--------ceehHHHHHHHHhhcCCCceEEE
Confidence 3 23467889999999 4577888889999999999999877 45689999999999999999999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHH---Hhh--hcCC
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLD---AID--SLRP 486 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~---~L~--~l~~ 486 (666)
++..|+.. +...+..+++.|.--++.--|+. ..++.+|...+--..+ ..+|. .|. .+-|
T Consensus 170 ~ThlDlfk-~~stLr~~KKrlkhRfWtEiyqG--aKlFylsgV~nGRYpD-------------reilnLsRfisVMKfRP 233 (1077)
T COG5192 170 VTHLDLFK-NPSTLRSIKKRLKHRFWTEIYQG--AKLFYLSGVENGRYPD-------------REILNLSRFISVMKFRP 233 (1077)
T ss_pred Eeeccccc-ChHHHHHHHHHHhhhHHHHHcCC--ceEEEecccccCCCCC-------------HHHHHHHHHHhhhcccc
Confidence 99999986 35667777777766555544533 4567788665433322 12322 221 1222
Q ss_pred CCCCCCCCcee---------eEEeEeecC-CC-eEEEEEEEEe-eeEeeCcEEEEcCCCceEEEeeeeecCcccc
Q 005973 487 PPREFSKPLLM---------PICDVLKSQ-HG-QVSACGKLEA-GALRSGLKVLVLPSGEVGTVHSIERDSQSCS 549 (666)
Q Consensus 487 ~~~~~~~p~~~---------~I~~v~~~~-~G-~v~v~G~V~s-G~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~ 549 (666)
.......|..+ |+ ++...+ +| .+.++|++.. |-.+....|.|-..| ...+..|+....||.
T Consensus 234 l~Wrn~HPy~laDR~~Dlt~p~-~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvG-Df~~adve~L~DPcP 306 (1077)
T COG5192 234 LEWRNMHPYVLADRVDDLTLPV-DIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVG-DFRMADVEVLIDPCP 306 (1077)
T ss_pred cccccCCceeehhhhccccchh-hhhhccccCceEEEEEEecCCCCCCCCceEeccCcc-ccchhhhhhcCCCCC
Confidence 22333333322 11 122222 34 3558999987 666777777764333 345555555444444
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.15 E-value=2e-10 Score=117.84 Aligned_cols=171 Identities=16% Similarity=0.273 Sum_probs=83.5
Q ss_pred EEeCCCCCHHHHHHHHHHhhCcc----------------------chhhhhhhHHHHhhhCCCcch-hhhcccc------
Q 005973 271 IVGHVDSGKSTLSGRLLFLLGRI----------------------TQKQMHKYEKEAKLQGKGSFA-YAWALDE------ 321 (666)
Q Consensus 271 IiG~~naGKSTLi~~Ll~~~~~i----------------------~~~~~~k~~k~~~~~g~g~~~-~~~~~d~------ 321 (666)
|+|++||||||++++|....... +-+..-..++.+++.+-|.-. ....++-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999998764332 233333444445554433310 1111111
Q ss_pred -cccccccCeEEEEEEEEEecCCeEEEEEeCCCccchHHHH------HHhcc--cCCEEEEEEeCCCCccccccccchhH
Q 005973 322 -SAEERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNM------ISGAT--QSDAAILVIDASVGSFEVGMNTAKGL 392 (666)
Q Consensus 322 -~~~e~~~GiTid~~~~~~~~~~~~i~liDTPGh~~f~~~~------~~~~~--~aD~aIlVVDa~~g~~e~~~~~~~~q 392 (666)
..++-+ .. ...+.|+|||||.++.... ...+. ..=++|+++|+..-... ..+...
T Consensus 81 ~l~~~i~------------~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~---~~f~s~ 144 (238)
T PF03029_consen 81 WLDEEIE------------KY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDP---SKFVSS 144 (238)
T ss_dssp HHHHHHH------------HH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSH---HHHHHH
T ss_pred HHHHHHh------------hc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccCh---hhHHHH
Confidence 111110 11 2268999999988764443 33333 35588999998743110 011122
Q ss_pred HHHHHHHHHHcCCCcEEEEEeccccccccch----------h--------hhHHHHHHhhhhhhcCcCCCCCcEEEeecc
Q 005973 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSKD----------R--------FDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (666)
Q Consensus 393 t~e~l~ll~~lgip~iIVViNK~Dlv~~~~e----------~--------~~~i~~el~~~l~~~~~~~~~i~iIpvSA~ 454 (666)
....+.....+++| .|.|+||+|+.+...+ . +..+..++..++..++. ...++|+|+.
T Consensus 145 ~L~s~s~~~~~~lP-~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~ 220 (238)
T PF03029_consen 145 LLLSLSIMLRLELP-HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSK 220 (238)
T ss_dssp HHHHHHHHHHHTSE-EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTT
T ss_pred HHHHHHHHhhCCCC-EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECC
Confidence 22233344557999 7999999999851100 0 12233445555544443 1278999999
Q ss_pred cCCCccc
Q 005973 455 ENQNLVT 461 (666)
Q Consensus 455 tG~nI~e 461 (666)
+++|+.+
T Consensus 221 ~~~~~~~ 227 (238)
T PF03029_consen 221 DGEGMEE 227 (238)
T ss_dssp TTTTHHH
T ss_pred ChHHHHH
Confidence 9999965
No 293
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.15 E-value=2.3e-10 Score=114.00 Aligned_cols=152 Identities=22% Similarity=0.200 Sum_probs=97.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeE-EEEEEEEEecCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYFDSKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiT-id~~~~~~~~~~ 343 (666)
+..+|+++|..|+|||+|+-++++.. +..+..+.+. .......++...
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~-------------------------------f~~~y~ptied~y~k~~~v~~~~ 50 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR-------------------------------FVEDYDPTIEDSYRKELTVDGEV 50 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc-------------------------------cccccCCCccccceEEEEECCEE
Confidence 45789999999999999999998431 1111122111 111222233445
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~Dlv~~~~ 422 (666)
..+.|+||+|+++|..+...++..+|+.++|++.++.. .|+.. .+.++.+...+. -.+| +|+|.||+|+...-.
T Consensus 51 ~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~---SF~~~-~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~ 125 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRS---SFEEA-KQLREQILRVKGRDDVP-IILVGNKCDLERERQ 125 (196)
T ss_pred EEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHH---HHHHH-HHHHHHHHHhhCcCCCC-EEEEEEcccchhccc
Confidence 56779999999999999999999999999999998742 22211 233333311122 2356 999999999974211
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...++...+...++ .+|+.+||+...|+.+
T Consensus 126 ----V~~eeg~~la~~~~-----~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 126 ----VSEEEGKALARSWG-----CAFIETSAKLNYNVDE 155 (196)
T ss_pred ----cCHHHHHHHHHhcC-----CcEEEeeccCCcCHHH
Confidence 12233333343443 4689999999999976
No 294
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.2e-10 Score=110.32 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=108.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+....|.|+|.-+||||||+.++-...... .+. ++ ..+.. .|.-.....++..+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~--------------~~~--------l~--~~ki~--~tvgLnig~i~v~~ 68 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKA--------------YGG--------LN--PSKIT--PTVGLNIGTIEVCN 68 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhh--------------hcC--------CC--HHHee--cccceeecceeecc
Confidence 456789999999999999999886331100 000 00 01111 23333444455567
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.|||..|++.....+..++..++++|+||||.+.. .|+....+.+..+..-...|+| +++.+||-|+.+. .
T Consensus 69 ~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~--~ 142 (197)
T KOG0076|consen 69 APLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNA--M 142 (197)
T ss_pred ceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhh--h
Confidence 88999999999999999999999999999999999842 2222233444455555567899 8999999999752 2
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++...+.. .... .....++.||||++|+|+.+
T Consensus 143 ~~~El~~~~~~-~e~~--~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 143 EAAELDGVFGL-AELI--PRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hHHHHHHHhhh-hhhc--CCccCccccchhhhcccHHH
Confidence 23333333332 2122 22456899999999999976
No 295
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=108.49 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=100.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.-.++|+++|.--+|||+|+=+.....-. .+.+..++. .+......++...
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQA---------------------------SF~~kk~n~ed~r 61 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQA---------------------------SFQNKKVNVEDCR 61 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHH---------------------------HHhhcccccccce
Confidence 45689999999999999999888743111 010000000 0001111223344
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC-cEEEEEeccccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVViNK~Dlv~~~~ 422 (666)
..+.||||+|+++|-..---+++.++++|||+|.++. ..|++. -.+++.+-..+|-. .+++|.||+|+..
T Consensus 62 a~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFqKV---KnWV~Elr~mlGnei~l~IVGNKiDLEe--- 132 (218)
T KOG0088|consen 62 ADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQKV---KNWVLELRTMLGNEIELLIVGNKIDLEE--- 132 (218)
T ss_pred eeeeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHHHH---HHHHHHHHHHhCCeeEEEEecCcccHHH---
Confidence 5688999999999987777788999999999999874 334332 23333444444533 2689999999963
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
......++...+....|. .++.+||+.+.||.+
T Consensus 133 -eR~Vt~qeAe~YAesvGA-----~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 133 -ERQVTRQEAEAYAESVGA-----LYMETSAKDNVGISE 165 (218)
T ss_pred -hhhhhHHHHHHHHHhhch-----hheecccccccCHHH
Confidence 333345556666666653 579999999999977
No 296
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.13 E-value=2.3e-10 Score=105.49 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=101.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
..+.++|--++|||||+|.... |...++ -+.|+-...+.+.-++..+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~--g~~~ed-------------------------------miptvGfnmrk~tkgnvti 67 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIAR--GQYLED-------------------------------MIPTVGFNMRKVTKGNVTI 67 (186)
T ss_pred eeEEEEeeccCCcceEEEEEee--ccchhh-------------------------------hcccccceeEEeccCceEE
Confidence 5689999999999999988762 111111 1224444555666677889
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH---HHcCCCcEEEEEeccccccccch
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI---RSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll---~~lgip~iIVViNK~Dlv~~~~e 423 (666)
.+||.||+.+|..++.++.+.++++++||||.++. ++..--.|.-.++ ...|+| ++|..||.|+.+.-.+
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~------k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~ 140 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD------KLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK 140 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc------cchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH
Confidence 99999999999999999999999999999998752 2222222222222 335788 8999999999864221
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. .+..++. -..+.+..+-.+.+|+++..|++.
T Consensus 141 ~--~li~rmg----L~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 141 I--ALIERMG----LSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred H--HHHHHhC----ccccccceEEEEEEEEcCCccHHH
Confidence 1 1222221 123344567789999999999965
No 297
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.2e-10 Score=111.96 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=104.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+...+|+++|--+|||||++..|-. +.+. ..--|+......+++.+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~--~E~v--------------------------------ttvPTiGfnVE~v~ykn 60 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV--------------------------------TTVPTIGFNVETVEYKN 60 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeecc--CCcc--------------------------------cCCCccccceeEEEEcc
Confidence 3457899999999999999988851 1110 01125555556677789
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHH-HHHHHHc---CCCcEEEEEecccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH-AQLIRSF---GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~-l~ll~~l---gip~iIVViNK~Dlv~ 419 (666)
..+++||..|+.++.+.+..++...+++|+|||.++... + ...++. ..++..- +.| +++..||.|+.+
T Consensus 61 ~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i-~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~ 132 (181)
T KOG0070|consen 61 ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------I-EEAKEELHRMLAEPELRNAP-LLVFANKQDLPG 132 (181)
T ss_pred eEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------H-HHHHHHHHHHHcCcccCCce-EEEEechhhccc
Confidence 999999999999999999999999999999999987521 1 122222 2222222 344 899999999985
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.-. ..++...|....+......+-.++|.+|+|+.+
T Consensus 133 als------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 133 ALS------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred cCC------HHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 322 233444444444555566778899999999966
No 298
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.6e-11 Score=114.30 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=73.4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||+|+++|...+-..++.|-+.||++|.+.....-+...|..|.+.| ....-|.||++.||+|+.+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h----AYcE~PDivlcGNK~DL~~---- 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH----AYCENPDIVLCGNKADLED---- 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh----hccCCCCEEEEcCccchhh----
Confidence 45779999999999999999999999999999998642221111222222222 1124567999999999974
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+...-..+...+..+++ +|++.+||-+|.|+.+
T Consensus 139 ~R~Vs~~qa~~La~kyg-----lPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 139 QRVVSEDQAAALADKYG-----LPYFETSACTGTNVEK 171 (219)
T ss_pred hhhhhHHHHHHHHHHhC-----CCeeeeccccCcCHHH
Confidence 22223344555555656 5899999999999976
No 299
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.12 E-value=2e-09 Score=111.15 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
.....++|+++|.+|+|||||+|+|++...... ....+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v------------------------------~~~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT------------------------------SAFQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCceEEEEEEEEEE
Confidence 345678999999999999999999995422111 01123455555555566
Q ss_pred CCeEEEEEeCCCccchH------HH----HHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCC---
Q 005973 342 KNYHVVVLDSPGHKDFV------PN----MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV--- 405 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~------~~----~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgi--- 405 (666)
.+..++||||||..+.. .. +..++ ...|++++|....... ........++.+.. +|.
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r-------~~~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR-------RDYLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhChhhH
Confidence 78899999999976541 11 11222 2478888886554321 11233344444443 453
Q ss_pred CcEEEEEeccccccc
Q 005973 406 DQLIVAVNKMDAVQY 420 (666)
Q Consensus 406 p~iIVViNK~Dlv~~ 420 (666)
.++|+|+||+|....
T Consensus 150 ~~~ivV~T~~d~~~p 164 (249)
T cd01853 150 RNAIVVLTHAASSPP 164 (249)
T ss_pred hCEEEEEeCCccCCC
Confidence 258999999998753
No 300
>PRK13768 GTPase; Provisional
Probab=99.10 E-value=6.6e-10 Score=115.12 Aligned_cols=114 Identities=21% Similarity=0.323 Sum_probs=70.0
Q ss_pred CeEEEEEeCCCccchH------HHHHHhccc--CCEEEEEEeCCCCccccccccchhHHHHHHHHH-----HHcCCCcEE
Q 005973 343 NYHVVVLDSPGHKDFV------PNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-----RSFGVDQLI 409 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~------~~~~~~~~~--aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-----~~lgip~iI 409 (666)
+..++||||||+.++. ..+...+.. ++++++|+|+..+. .....+...++ ...++| +|
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~--------~~~d~~~~~~l~~~~~~~~~~~-~i 166 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK--------TPSDFVSLLLLALSVQLRLGLP-QI 166 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC--------CHHHHHHHHHHHHHHHHHcCCC-EE
Confidence 3479999999976632 223333333 89999999997642 12222222222 256788 89
Q ss_pred EEEeccccccccchhhhHHHHHHh------------------------hhhhhcCcCCCCCcEEEeecccCCCcccCCCC
Q 005973 410 VAVNKMDAVQYSKDRFDSIKVQLG------------------------TFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (666)
Q Consensus 410 VViNK~Dlv~~~~e~~~~i~~el~------------------------~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~ 465 (666)
+|+||+|+.+..+ .+...+.+. ..++..+ ...+++++||++++|+.+
T Consensus 167 ~v~nK~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~gl~~---- 237 (253)
T PRK13768 167 PVLNKADLLSEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGEGFDE---- 237 (253)
T ss_pred EEEEhHhhcCchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCcCHHH----
Confidence 9999999985322 222222111 1222333 234789999999999965
Q ss_pred ccccccCCcccHHHHhhhcC
Q 005973 466 GRLLSWYKGPCLLDAIDSLR 485 (666)
Q Consensus 466 ~~~~~Wy~g~~LL~~L~~l~ 485 (666)
|++.|....
T Consensus 238 -----------L~~~I~~~l 246 (253)
T PRK13768 238 -----------LYAAIQEVF 246 (253)
T ss_pred -----------HHHHHHHHc
Confidence 788876544
No 301
>PTZ00099 rab6; Provisional
Probab=99.07 E-value=1.6e-09 Score=106.08 Aligned_cols=105 Identities=18% Similarity=0.112 Sum_probs=69.3
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAV 418 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv 418 (666)
.....+.||||||+++|...+..+++.||++|+|+|++.... |+ ....++..+.... ++| +|+|+||+|+.
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~ 98 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-IALVGNKTDLG 98 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECcccc
Confidence 345678899999999999888888999999999999987521 11 1112222233332 344 89999999986
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... ..+...+.+..+ ..++++||++|.|+.+
T Consensus 99 ~~~~v~----~~e~~~~~~~~~-----~~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 99 DLRKVT----YEEGMQKAQEYN-----TMFHETSAKAGHNIKV 132 (176)
T ss_pred cccCCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 421111 112223333332 3679999999999976
No 302
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.03 E-value=4e-09 Score=107.44 Aligned_cols=151 Identities=18% Similarity=0.321 Sum_probs=93.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe-cCCeEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYHV 346 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~-~~~~~i 346 (666)
||.++|..++||||+.+.+.+....- +-..-|.|+++....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~------------------------------dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR------------------------------DTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG------------------------------GGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch------------------------------hccccCCcCCceEEEEecCCCcEE
Confidence 68999999999999999988432211 11223667777777775 456699
Q ss_pred EEEeCCCccchHHHH-----HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005973 347 VVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 347 ~liDTPGh~~f~~~~-----~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~ 419 (666)
.|||.||+..+.... ..-++.+.++|+|+|+....+...+ ......+..+... +++ +.|.+.|||++.
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l----~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~ 125 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDL----AYLSDCIEALRQYSPNIK-VFVFIHKMDLLS 125 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHH----HHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHH----HHHHHHHHHHHHhCCCCe-EEEEEeecccCC
Confidence 999999998877663 3446789999999999854333222 3344444445444 344 889999999985
Q ss_pred cc--chhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc
Q 005973 420 YS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (666)
Q Consensus 420 ~~--~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t 455 (666)
.+ .+.++.+.+.+.+.+...++. .+.++.+|...
T Consensus 126 ~~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D 161 (232)
T PF04670_consen 126 EDEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcC
Confidence 32 233566777777777766653 46677777654
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=9.9e-10 Score=117.47 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.++.++|+||+|...-... .+..||++|+|++...+. ....+. ...+.+. -|+|+||+|+.+.
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd----------~iq~~k--~gi~E~a-DIiVVNKaDl~~~- 209 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGD----------ELQGIK--KGIMELA-DLIVINKADGDNK- 209 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchH----------HHHHHH--hhhhhhh-heEEeehhcccch-
Confidence 5688999999996532211 356799999998744331 111111 1122223 3899999999853
Q ss_pred chhhhHHHHHHhhhhhhcCc--CCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~--~~~~i~iIpvSA~tG~nI~e 461 (666)
........++...+..... .....+++++||++|.|+.+
T Consensus 210 -~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 -TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred -hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 2333444555555533221 11235799999999999976
No 304
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.1e-09 Score=107.42 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
..|.++|..|+|||+|+-+|+.... +..-+.+......+..+...+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~----------------------------------~~TvtSiepn~a~~r~gs~~~ 84 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH----------------------------------RGTVTSIEPNEATYRLGSENV 84 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc----------------------------------cCeeeeeccceeeEeecCcce
Confidence 5699999999999999999984311 001112333333344455568
Q ss_pred EEEeCCCccchHHHHHHhcc---cCCEEEEEEeCCCCccccccccchhHHHHHH-HHH-HH---cCCCcEEEEEeccccc
Q 005973 347 VVLDSPGHKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLI-RS---FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~---~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll-~~---lgip~iIVViNK~Dlv 418 (666)
.|||.|||.+.......++. .+-++|+|||+..- ..+. ....|.+ .++ .. .+.++++++.||.|+.
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f--~k~v----rdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF--LKNV----RDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc--chhh----HHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99999999999999888887 79999999998752 1111 1222222 111 11 2344599999999987
Q ss_pred c
Q 005973 419 Q 419 (666)
Q Consensus 419 ~ 419 (666)
-
T Consensus 159 t 159 (238)
T KOG0090|consen 159 T 159 (238)
T ss_pred h
Confidence 4
No 305
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.02 E-value=2.2e-09 Score=92.22 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=69.9
Q ss_pred eeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC---ceEEEeeeeecCcccceeccCCceeEEeeccCcCccccc
Q 005973 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 497 ~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~---~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
..|.++|+.. .|.+ +.|+|.+|.|++|+.+.++|.+ ...+|++|+++.+.+++|.+|+.|+|.|++++ ++++|
T Consensus 3 ~~V~~vf~~~~~g~v-ag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~G 79 (84)
T cd03692 3 AEVRAVFKISKVGNI-AGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVG 79 (84)
T ss_pred EEEEEEEECCCCcEE-EEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCC
Confidence 4578889877 7887 8999999999999999999999 56799999999999999999999999999987 89999
Q ss_pred cEE
Q 005973 573 GVL 575 (666)
Q Consensus 573 ~VL 575 (666)
++|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 987
No 306
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.01 E-value=1.3e-10 Score=105.31 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=73.2
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
......+.+|||+|+++|...+..+++.||+++|++|..+.....+.+.|..+..|..+. .+. +.++.||+|+..
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~----~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKE----AVA-LMLLGNKCDLAH 117 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHh----hHh-Hhhhccccccch
Confidence 345677889999999999999999999999999999998754333333333333333222 233 678899999964
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...-. ..+-.++.+..+ +||+.+||++|.|++.
T Consensus 118 er~v~----~ddg~kla~~y~-----ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 118 ERAVK----RDDGEKLAEAYG-----IPFMETSAKTGFNVDL 150 (192)
T ss_pred hhccc----cchHHHHHHHHC-----CCceeccccccccHhH
Confidence 21111 112223333333 6899999999999964
No 307
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.99 E-value=5.9e-09 Score=114.51 Aligned_cols=81 Identities=25% Similarity=0.259 Sum_probs=54.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe------
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD------ 340 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~------ 340 (666)
++|+|+|.+|+|||||+|+|++....+. ..++.|++.......
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~-------------------------------~y~f~t~~p~~g~~~v~~~~~ 50 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIA-------------------------------NYPFTTIDPNVGVAYVRVECP 50 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccc-------------------------------CCCCcceeeeeeeeeeccCCc
Confidence 5799999999999999999995422111 012333332222111
Q ss_pred ------------------cCCeEEEEEeCCCcc-------chHHHHHHhcccCCEEEEEEeCC
Q 005973 341 ------------------SKNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDAS 378 (666)
Q Consensus 341 ------------------~~~~~i~liDTPGh~-------~f~~~~~~~~~~aD~aIlVVDa~ 378 (666)
.....+.|+||||.. ......+..++.+|++++|||+.
T Consensus 51 ~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 51 CKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 122568899999942 24456677789999999999997
No 308
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.98 E-value=5.9e-09 Score=109.76 Aligned_cols=124 Identities=13% Similarity=0.143 Sum_probs=72.6
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE
Q 005973 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 260 ~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~ 339 (666)
+++....++|+++|.+|+|||||+|+|++......... .+.|........
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f------------------------------~s~t~~~~~~~~ 81 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF------------------------------QSEGLRPMMVSR 81 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC------------------------------CCcceeEEEEEE
Confidence 44456788999999999999999999996532211100 111222222223
Q ss_pred ecCCeEEEEEeCCCccchH--H-HHHHhc------ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCC---C
Q 005973 340 DSKNYHVVVLDSPGHKDFV--P-NMISGA------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---D 406 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~--~-~~~~~~------~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgi---p 406 (666)
...+..+.||||||..+.. . ..+..+ ..+|++|+|......- ........+..+.. +|- .
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-------~~~~DkqlLk~Iqe~FG~~iw~ 154 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-------VDTLDGQVIRAITDSFGKDIWR 154 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-------CCHHHHHHHHHHHHHhhhhhhc
Confidence 3478899999999966531 1 111111 2589999995543211 11233333333332 342 3
Q ss_pred cEEEEEeccccccc
Q 005973 407 QLIVAVNKMDAVQY 420 (666)
Q Consensus 407 ~iIVViNK~Dlv~~ 420 (666)
++|||+|+.|....
T Consensus 155 ~~IVVfTh~d~~~p 168 (313)
T TIGR00991 155 KSLVVLTHAQFSPP 168 (313)
T ss_pred cEEEEEECCccCCC
Confidence 58999999997743
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.94 E-value=5.4e-09 Score=105.01 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=56.3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
+..++|++|.|..... .......+..+.|+|+..+.. .+ +......+.+ .++++||+|+.+...
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--------~~----~~~~~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--------KP----LKYPGMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--------hh----hhhHhHHhhC-CEEEEEHHHccccch
Confidence 4578999999931111 111233566778999876521 11 1112234556 699999999985322
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.....+.+.+.. .. ...+++++||++|+|+.+
T Consensus 166 ~~~~~~~~~l~~----~~---~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 166 FDVEKMKADAKK----IN---PEAEIILMSLKTGEGLDE 197 (207)
T ss_pred hhHHHHHHHHHH----hC---CCCCEEEEECCCCCCHHH
Confidence 223333333333 22 236799999999999965
No 310
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.93 E-value=6.5e-09 Score=95.44 Aligned_cols=151 Identities=20% Similarity=0.264 Sum_probs=100.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-C
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~ 342 (666)
.+.++|.++|--|||||||+.+|.... ....-+..| .....++. .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED------------------------------~~hltpT~G----Fn~k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED------------------------------PRHLTPTNG----FNTKKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC------------------------------hhhccccCC----cceEEEeecC
Confidence 456899999999999999999997321 111111122 22334444 4
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~ 419 (666)
.+++++||..|+....+-+..++...|.+|+|||.++.-+ | .....+...++. ...+| +.+..||-|++-
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---f---eE~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---F---EEISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---H---HHHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 4899999999999999999999999999999999765422 2 122233333333 34566 888899999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ...+++... +.-.++....+.+-.+||++++|+..
T Consensus 134 a--a~~eeia~k----lnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 134 A--AKVEEIALK----LNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred h--cchHHHHHh----cchhhhhhceEEeeeCccccccCccC
Confidence 2 222223222 22223444456778899999999965
No 311
>PTZ00258 GTP-binding protein; Provisional
Probab=98.91 E-value=1.9e-08 Score=109.72 Aligned_cols=83 Identities=22% Similarity=0.133 Sum_probs=60.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..++|+|||.+|+|||||+|+|++....+ ...+++|++.....+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~n~pftTi~p~~g~v~~~d~ 68 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPA-------------------------------ENFPFCTIDPNTARVNVPDE 68 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccc-------------------------------cCCCCCcccceEEEEecccc
Confidence 45689999999999999999998542211 112566766555554433
Q ss_pred ---------------CeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCC
Q 005973 343 ---------------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (666)
Q Consensus 343 ---------------~~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~ 378 (666)
..++.|+||||... .....+..++.+|++|+|||+.
T Consensus 69 r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 69 RFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999432 4456677789999999999985
No 312
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.90 E-value=6e-09 Score=112.41 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=80.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
.+++|||+|.+|+|||||||+|.+-.. . ..+... + . ...+|+....+. ...--
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~----~------------d~~aA~----t--G----v~etT~~~~~Y~-~p~~p 86 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGH----E------------DEGAAP----T--G----VVETTMEPTPYP-HPKFP 86 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--T----T------------STTS------S--S----SHSCCTS-EEEE--SS-T
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC----C------------CcCcCC----C--C----CCcCCCCCeeCC-CCCCC
Confidence 568999999999999999999973210 0 000000 0 0 001233322222 12223
Q ss_pred EEEEEeCCCcc-------chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 345 HVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 345 ~i~liDTPGh~-------~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
.++|||.||.. +|+..+ .+...|++|+|.+.. +.......+..+..+|.+ +.+|-+|+|.
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~r----------f~~ndv~La~~i~~~gK~-fyfVRTKvD~ 153 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSER----------FTENDVQLAKEIQRMGKK-FYFVRTKVDS 153 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--HHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCC----------CchhhHHHHHHHHHcCCc-EEEEEecccc
Confidence 59999999942 233322 467789888776643 234566667778889998 9999999996
Q ss_pred c----------cccchh-hhHHHHHHhhhhhhcCcCCCCCcEEEeeccc
Q 005973 418 V----------QYSKDR-FDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (666)
Q Consensus 418 v----------~~~~e~-~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t 455 (666)
- .+++++ ++.+++...+.|+..+... .+++.||...
T Consensus 154 Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~--P~VFLVS~~d 200 (376)
T PF05049_consen 154 DLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSE--PQVFLVSSFD 200 (376)
T ss_dssp HHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS----EEEB-TTT
T ss_pred cHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCc--CceEEEeCCC
Confidence 1 122222 4666777777777767643 4678899875
No 313
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.89 E-value=1.1e-08 Score=91.03 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCC-------C-----ceEEEeeeeecCcccc
Q 005973 491 FSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPS-------G-----EVGTVHSIERDSQSCS 549 (666)
Q Consensus 491 ~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~-------~-----~~~~VksI~~~~~~v~ 549 (666)
.++|++|+|.++|.++ .|.| +.|+|.+|.|++||+|.+.|. + ...+|.+|+.++..++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgV-igGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGV-AGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeE-EEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCcccc
Confidence 4689999999998764 6788 899999999999999999976 2 2468999999999999
Q ss_pred eeccCCceeEE---eeccCcCccccccEEecC
Q 005973 550 VARAGDNIAVS---LQGIDVSRVMSGGVLCHP 578 (666)
Q Consensus 550 ~A~aGd~V~l~---L~gid~~~i~~G~VL~~~ 578 (666)
+|.||+.|++. ..++...+..+|+|++.+
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EEeCCCeEEEccccCccccccceeeEEEeecC
Confidence 99999999994 347777889999999875
No 314
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.5e-08 Score=93.03 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=99.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
..+|.++|-.++||||++-.|.-..... .-.|+-.....+.+.+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~----------------------------------~ipTvGFnvetVtykN~k 62 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT----------------------------------TIPTVGFNVETVTYKNVK 62 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc----------------------------------cccccceeEEEEEeeeeE
Confidence 4679999999999999998886221100 011233334445567889
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH--Hc-CCCcEEEEEeccccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SF-GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~--~l-gip~iIVViNK~Dlv~~~~ 422 (666)
|++||..|+.+..+.+..++....++|+|+|+.... .+..--.|.-.++. ++ .++ ++|..||-|+.+...
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d------r~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD------RIEEARNELHRIINDREMRDAI-ILILANKQDLPDAMK 135 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchh------hHHHHHHHHHHHhCCHhhhcce-EEEEecCcccccccC
Confidence 999999999999999999999999999999987641 11111112112221 12 334 788889999986422
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+++..++.--...+...-+.|++|.+|.|+.+
T Consensus 136 ------pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 136 ------PQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred ------HHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 234455554334445566778999999999866
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.87 E-value=8.4e-09 Score=99.26 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 KNYHVVVLDSPGHKD----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~~~~i~liDTPGh~~----f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
....++|+||||... ....+..++..+|++|+|+++.... .....+.+........+.+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~--------~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDL--------TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTG--------GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCccc--------chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 456799999999533 2255666778999999999999863 22333444333443444489999995
No 316
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.84 E-value=4.4e-08 Score=98.84 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=80.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|.+|+||||++|.|++....-.. .....+|...........+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-----------------------------~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-----------------------------SSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-----------------------------cccCCcccccceeeeeecceEE
Confidence 57999999999999999999954221100 0112345455555557789999
Q ss_pred EEEeCCCccc-------hHHHHHH----hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH-HcCC---CcEEEE
Q 005973 347 VVLDSPGHKD-------FVPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV---DQLIVA 411 (666)
Q Consensus 347 ~liDTPGh~~-------f~~~~~~----~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgi---p~iIVV 411 (666)
++|||||..+ ....+.. .....+++|||+.+.. +....+..+..+. .+|- .++|||
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 9999999433 2233333 2345899999999873 2344455554443 3453 468999
Q ss_pred EeccccccccchhhhHHH-----HHHhhhhhhcC
Q 005973 412 VNKMDAVQYSKDRFDSIK-----VQLGTFLRSCG 440 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~-----~el~~~l~~~~ 440 (666)
+|..|...... +++.. ..+..+++.++
T Consensus 123 fT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 123 FTHADELEDDS--LEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp EEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccccc--HHHHHhccCchhHhHHhhhcC
Confidence 99999775332 22222 34667777666
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.84 E-value=1.2e-08 Score=104.59 Aligned_cols=146 Identities=17% Similarity=0.178 Sum_probs=82.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh------Cccchhhhh-hhHHHHh-------hhCCCcchhhhc-------ccccc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL------GRITQKQMH-KYEKEAK-------LQGKGSFAYAWA-------LDESA 323 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~------~~i~~~~~~-k~~k~~~-------~~g~g~~~~~~~-------~d~~~ 323 (666)
..+.|+++|+.++|||||+++|++.. +.++....+ .+.+... ..++.-..+..+ ++..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~- 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV- 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh-
Confidence 45689999999999999999999763 222221111 0000000 000000000000 0000
Q ss_pred cccccCeEEEEEEEEEec-CCeEEEEEeCCCccc-------------hHHHHHHhcc-cCCEEEEEEeCCCCcccccccc
Q 005973 324 EERERGITMTVAVAYFDS-KNYHVVVLDSPGHKD-------------FVPNMISGAT-QSDAAILVIDASVGSFEVGMNT 388 (666)
Q Consensus 324 ~e~~~GiTid~~~~~~~~-~~~~i~liDTPGh~~-------------f~~~~~~~~~-~aD~aIlVVDa~~g~~e~~~~~ 388 (666)
.....+++-++....+.. .-..++|+||||... ....+..++. ..+++++|+||..+.
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~------- 176 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL------- 176 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-------
Confidence 011123333444444433 346799999999642 1223445566 356999999998763
Q ss_pred chhHH-HHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 389 AKGLT-REHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 389 ~~~qt-~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..+. .+.+..+...+.+ +|+|+||+|..+.
T Consensus 177 -~~~d~l~ia~~ld~~~~r-ti~ViTK~D~~~~ 207 (240)
T smart00053 177 -ANSDALKLAKEVDPQGER-TIGVITKLDLMDE 207 (240)
T ss_pred -CchhHHHHHHHHHHcCCc-EEEEEECCCCCCc
Confidence 2333 5667777778887 8999999999853
No 318
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.79 E-value=1.8e-08 Score=100.66 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCc--cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGH--KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh--~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
+...+||+|.|. ..... ...+|.+|+|+|+.++. ...... ...+... =++++||+|+.+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-----~~l~~~~i~vvD~~~~~---------~~~~~~---~~qi~~a-d~~~~~k~d~~~~ 152 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-----PELADLTIFVIDVAAGD---------KIPRKG---GPGITRS-DLLVINKIDLAPM 152 (199)
T ss_pred CCCEEEEECCCCCcccccc-----hhhhCcEEEEEEcchhh---------hhhhhh---HhHhhhc-cEEEEEhhhcccc
Confidence 456889999993 11111 12268899999998752 111111 1122222 1789999999853
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.....+.+.+.+..+ + ...+++++||++|+|+.+
T Consensus 153 ~~~~~~~~~~~~~~~----~---~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 153 VGADLGVMERDAKKM----R---GEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred ccccHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHH
Confidence 233444444444443 2 246889999999999966
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.77 E-value=1.4e-07 Score=100.29 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=57.9
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.++.++|+||||... .....+..+|.++++.....+ ........ ..++++ .++|+||+|+....
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~----------~el~~~~~--~l~~~~-~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG----------DDLQGIKA--GLMEIA-DIYVVNKADGEGAT 188 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc----------HHHHHHHH--HHhhhc-cEEEEEcccccchh
Confidence 578899999999542 223345668999988655432 11111111 124566 68999999998532
Q ss_pred chhhhHHHHH----Hhhhhhh-cCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQ----LGTFLRS-CGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~e----l~~~l~~-~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ...+... +..+... .++ ..+++++||++|+|+.+
T Consensus 189 ~--~~~~~~~~~~~l~~l~~~~~~~---~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 189 N--VTIARLMLALALEEIRRREDGW---RPPVLTTSAVEGRGIDE 228 (300)
T ss_pred H--HHHHHHHHHHHHhhccccccCC---CCCEEEEEccCCCCHHH
Confidence 2 1111111 1222111 122 24689999999999976
No 320
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.76 E-value=1.4e-07 Score=101.90 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=82.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccC---eEEEEEE---EE
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG---ITMTVAV---AY 338 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~G---iTid~~~---~~ 338 (666)
..+-|+|+|++++|||||+|+|......-.-.. .+.++ ...|..... ..| +|.++.+ .-
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~--~~~k~------------Ra~DELpqs-~~GktItTTePkfvP~kA 80 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISN--EYDKE------------RAQDELPQS-AAGKTIMTTEPKFVPNEA 80 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccc--hhHHh------------HHHhccCcC-CCCCCcccCCCccccCcc
Confidence 457799999999999999999997633221111 11111 112222221 245 4555554 22
Q ss_pred Eec-----CCeEEEEEeCCCccc-------------------------hHHH----HHHhcc-cCCEEEEEE-eCCCCcc
Q 005973 339 FDS-----KNYHVVVLDSPGHKD-------------------------FVPN----MISGAT-QSDAAILVI-DASVGSF 382 (666)
Q Consensus 339 ~~~-----~~~~i~liDTPGh~~-------------------------f~~~----~~~~~~-~aD~aIlVV-Da~~g~~ 382 (666)
++. -...+.|+||+|..+ |... +..-+. .+|++|+|. |++-+.
T Consensus 81 vEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d- 159 (492)
T TIGR02836 81 VEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD- 159 (492)
T ss_pred eEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc-
Confidence 222 246899999999322 1111 233345 699999999 875221
Q ss_pred ccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 383 EVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 383 e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
...+.+.....+.+..++..++| +|+|+||.|-
T Consensus 160 -I~Re~y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 160 -IPREDYVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred -cccccchHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 11111334567788899999999 9999999993
No 321
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.75 E-value=2.4e-08 Score=90.17 Aligned_cols=130 Identities=25% Similarity=0.297 Sum_probs=85.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
++++||.+++|||||++.|-+..-.. -.|..+ +++. =-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----------------------------------kKTQAv-----e~~d--~~ 40 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----------------------------------KKTQAV-----EFND--KG 40 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----------------------------------ccccee-----eccC--cc
Confidence 69999999999999999998431110 011111 1111 12
Q ss_pred EEeCCC----ccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 348 VLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 348 liDTPG----h~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
.||||| |..+-...+..+..+|++++|-.|.++... |. + .+ ...+.+++|=|++|.|+.. ..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~--f~---p------~f-~~~~~k~vIgvVTK~DLae--d~ 106 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR--FP---P------GF-LDIGVKKVIGVVTKADLAE--DA 106 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc--CC---c------cc-ccccccceEEEEecccccc--hH
Confidence 589999 666767777778889999999999886321 11 1 11 2234445899999999983 22
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. +..+.+|...|- -+++.+|+.+..|+.+
T Consensus 107 dI----~~~~~~L~eaGa----~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 107 DI----SLVKRWLREAGA----EPIFETSAVDNQGVEE 136 (148)
T ss_pred hH----HHHHHHHHHcCC----cceEEEeccCcccHHH
Confidence 22 233445555552 3679999999999966
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.74 E-value=4.1e-08 Score=100.21 Aligned_cols=169 Identities=22% Similarity=0.250 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHH--hhhCCCcc-hhhhcccc---cccccccCeEEEEEEEE
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEA--KLQGKGSF-AYAWALDE---SAEERERGITMTVAVAY 338 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~--~~~g~g~~-~~~~~~d~---~~~e~~~GiTid~~~~~ 338 (666)
+...|+|.|++|+|||||+++|....-.-. .+.+ ..+....| .-+.+-|. ......+++-+-.....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-------~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atR 100 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERG-------KRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATR 100 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---------EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcC-------CceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence 457899999999999999999985421100 0000 00000000 00112121 11223344444322111
Q ss_pred ----------------EecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH
Q 005973 339 ----------------FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (666)
Q Consensus 339 ----------------~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~ 402 (666)
++..++.++|+.|.|--.- -..-+..+|.+++|+-...|. .++..+.-..|.
T Consensus 101 G~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD---~iQ~~KaGimEi------ 168 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGD---EIQAIKAGIMEI------ 168 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCC---CCCTB-TTHHHH------
T ss_pred CCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCcc---HHHHHhhhhhhh------
Confidence 1224688999999994322 122346699999999877663 222222223332
Q ss_pred cCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcC--cCCCCCcEEEeecccCCCccc
Q 005973 403 FGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 403 lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~--~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. |+|+||+|+... +....++...+.-.. -.....|++.+||.+|.|+.+
T Consensus 169 ---aD-i~vVNKaD~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~e 220 (266)
T PF03308_consen 169 ---AD-IFVVNKADRPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDE 220 (266)
T ss_dssp ----S-EEEEE--SHHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHH
T ss_pred ---cc-EEEEeCCChHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHH
Confidence 22 789999997643 223344444443221 111236899999999999976
No 323
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.72 E-value=4.7e-08 Score=99.66 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=100.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.+.+++.|.+|+|||+|+|.|+....... .++ ...|-|..+.... -+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~-------------t~k---------------~K~g~Tq~in~f~---v~ 182 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIAD-------------TSK---------------SKNGKTQAINHFH---VG 182 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhh-------------hcC---------------CCCccceeeeeee---cc
Confidence 4568899999999999999999985422211 000 0345565544444 34
Q ss_pred eEEEEEeCCCc----------cchHHHHHHhc---ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005973 344 YHVVVLDSPGH----------KDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (666)
Q Consensus 344 ~~i~liDTPGh----------~~f~~~~~~~~---~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (666)
..+.++|.||. .++...+..++ ..-=.+.|++|++-+ +...+...+.++...++| +.+
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--------i~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--------IQPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--------CCCCChHHHHHHhhcCCC-eEE
Confidence 57999999991 23444444443 334567788999877 355677888999999999 999
Q ss_pred EEeccccccccc----hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 411 AVNKMDAVQYSK----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 411 ViNK~Dlv~~~~----e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|+||||+...-. .....+...+..+.+. +-.-..||+.+|+.++.|++++
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~--~f~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG--VFLVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhcccc--ceeccCCceeeecccccCceee
Confidence 999999864211 1111122112222211 1123468999999999999774
No 324
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.70 E-value=2.3e-08 Score=98.57 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=95.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE--EEEEEe-c
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--AVAYFD-S 341 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~--~~~~~~-~ 341 (666)
..++++|||...+|||.|+-.+.. +.+.++..+.+. +. ....+. .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~-------------------------------~~fp~~yvPTVF-dnys~~v~V~dg 50 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT-------------------------------NAFPEEYVPTVF-DNYSANVTVDDG 50 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc-------------------------------CcCcccccCeEE-ccceEEEEecCC
Confidence 458899999999999999866651 223333334322 11 122232 4
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~Dlv~~ 420 (666)
....+.||||+|+++|-+...-.+.++|++|++++...+....+. ..+++-.+.+. -++| +|+|.+|.|+.+
T Consensus 51 ~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv-----~~kW~pEi~~~cp~vp-iiLVGtk~DLr~- 123 (198)
T KOG0393|consen 51 KPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENV-----KSKWIPEIKHHCPNVP-IILVGTKADLRD- 123 (198)
T ss_pred CEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHH-----HhhhhHHHHhhCCCCC-EEEEeehHHhhh-
Confidence 445677999999999977554567889999999987765322111 12222222222 2577 999999999983
Q ss_pred cchhhhHH---------HHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i---------~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+....+.+ ..+...+.+++|. +.++.+||++..|+.+
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~ 169 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKE 169 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHH
Confidence 22222111 1233344444443 5789999999999865
No 325
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.70 E-value=1e-07 Score=79.27 Aligned_cols=79 Identities=35% Similarity=0.513 Sum_probs=69.7
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcC--CCceEEEeeeeecCcccceeccCCceeEEeeccCcCcccc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLP--SGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P--~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~ 571 (666)
++++|.+++..+ .|.+ +.|+|.+|+|++||.+.+.| .....+|++|+..+.+++.+.||+.+++.+...+ +++.
T Consensus 1 ~~~~v~~~~~~~~~g~v-~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~ 77 (83)
T cd01342 1 LRALVFKVFKDKGRGTV-ATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKI 77 (83)
T ss_pred CeeEEEEEEEeCCceEE-EEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCC
Confidence 467888999887 7877 89999999999999999999 7778899999999999999999999999876433 7889
Q ss_pred ccEEe
Q 005973 572 GGVLC 576 (666)
Q Consensus 572 G~VL~ 576 (666)
|++|+
T Consensus 78 g~~l~ 82 (83)
T cd01342 78 GDTLT 82 (83)
T ss_pred CCEec
Confidence 99986
No 326
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=9e-09 Score=97.95 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=96.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
.....++++|+|.-++||||++.+.+. |..+.+.- ..-|+.+......+..
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCk--gifTkdyk---------------------------ktIgvdflerqi~v~~ 66 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKDYK---------------------------KTIGVDFLERQIKVLI 66 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhc--cccccccc---------------------------cccchhhhhHHHHhhH
Confidence 344679999999999999999999982 22221110 0011111111122334
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~Dlv~~ 420 (666)
+..++.+|||+|+++|-.-+..+++.|.+.+||++.++.. .| .....+.-.+-.. -.|| .++|-||+|+++.
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~---SF---ea~~~w~~kv~~e~~~IP-tV~vqNKIDlved 139 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRY---SF---EATLEWYNKVQKETERIP-TVFVQNKIDLVED 139 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHH---HH---HHHHHHHHHHHHHhccCC-eEEeeccchhhHh
Confidence 5667889999999999988889999999999999987642 11 1111111122222 3577 8999999999963
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.-.-.++ ..+.+.+. ..++.+|++...|+..
T Consensus 140 s~~~~~ev----E~lak~l~-----~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 140 SQMDKGEV----EGLAKKLH-----KRLYRTSVKEDFNVMH 171 (246)
T ss_pred hhcchHHH----HHHHHHhh-----hhhhhhhhhhhhhhHH
Confidence 32111112 22222222 2458899999999965
No 327
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.4e-07 Score=89.13 Aligned_cols=114 Identities=18% Similarity=0.046 Sum_probs=84.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.-+++++|--|||||||++.|-.+.-.. .--|.++....+.+.+.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q----------------------------------hvPTlHPTSE~l~Ig~m 64 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ----------------------------------HVPTLHPTSEELSIGGM 64 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc----------------------------------cCCCcCCChHHheecCc
Confidence 45679999999999999999886321110 12255666667777889
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH----HcCCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVViNK~Dlv~~ 420 (666)
.++-+|..||.....-+..++..+|++|++|||.+.+.. ...+++++.+. ...+| +++..||+|.+..
T Consensus 65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~-------~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERF-------AESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred eEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHh-------HHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 999999999999999999999999999999999865311 23333333322 24677 8999999999864
No 328
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.3e-08 Score=91.18 Aligned_cols=150 Identities=23% Similarity=0.235 Sum_probs=96.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+..+|.++|--|+||+|++=+|-- +.+.. ..+ |+......+.+++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqv--gevvt------------------------------tkP--tigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV--GEVVT------------------------------TKP--TIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc--Ccccc------------------------------cCC--CCCcCccccccccc
Confidence 346789999999999998766641 11110 011 33334445556888
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.+||..|+....+.+..++...|.+|+|||.++.. . +..--.+...++.+ .+.. ++|+.||+|....
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d---r---is~a~~el~~mL~E~eLq~a~-llv~anKqD~~~~- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD---R---ISIAGVELYSMLQEEELQHAK-LLVFANKQDYSGA- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchh---h---hhhhHHHHHHHhccHhhcCce-EEEEeccccchhh-
Confidence 9999999999999999999999999999999988642 1 11112223233322 2333 7889999997642
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ...+....|.--.++...+.++..||.+|+|+++
T Consensus 135 --~---t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 135 --L---TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred --h---hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 1 1222222222222233447889999999999976
No 329
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.64 E-value=1.1e-07 Score=79.22 Aligned_cols=68 Identities=32% Similarity=0.416 Sum_probs=60.5
Q ss_pred CeEEEEEEEEeeeEeeCcEEEEcC--CCce---EEEeeeeecCcccceeccCCceeEEeeccCcCc-cccccEEe
Q 005973 508 GQVSACGKLEAGALRSGLKVLVLP--SGEV---GTVHSIERDSQSCSVARAGDNIAVSLQGIDVSR-VMSGGVLC 576 (666)
Q Consensus 508 G~v~v~G~V~sG~Lk~Gd~v~v~P--~~~~---~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~-i~~G~VL~ 576 (666)
|++ ++|||++|+|++||+|+++| ++.. .+|++|+.++....++.+|+.+++.+...+..+ +++||+||
T Consensus 1 G~v-~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRV-ATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEE-EEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEE-EEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 566 89999999999999999976 3344 899999999999999999999999998888888 89999997
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.63 E-value=2.7e-07 Score=95.51 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.++.++||.|.|--.-- ..-...+|.+++|.=...|. .-|... .-.+.+-. |+|+||+|+.+.
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD--------~~Q~iK----~GimEiaD-i~vINKaD~~~A- 204 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGD--------DLQGIK----AGIMEIAD-IIVINKADRKGA- 204 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCc--------HHHHHH----hhhhhhhh-eeeEeccChhhH-
Confidence 46889999999943211 12235589999988666552 112111 11122222 889999996542
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+..+.++...+...-....-+....+++.+||.+|+|+.+
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~ 244 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDE 244 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHH
Confidence 2233334333333321122222356889999999999966
No 331
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.61 E-value=1.5e-07 Score=81.12 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=59.0
Q ss_pred eeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEE-eCceEEeee
Q 005973 584 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVN-QSQNTSFQY 662 (666)
Q Consensus 584 ~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~-l~~pI~ve~ 662 (666)
.++.|+|++.||+++.||..||++.+|+++..++|+|.++.. ++|++|+.+.|+|+ +.+|+|+|+
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~ 67 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE 67 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc
Confidence 368899999999999999999999999999999999987743 57999999999999 489999885
No 332
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=98.57 E-value=3.2e-07 Score=79.74 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=59.6
Q ss_pred eeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEE
Q 005973 585 ATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTS 659 (666)
Q Consensus 585 ~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ 659 (666)
+..|+|++.+|+. +.||..|+++.+|+|+..+.|+|..|. +|.+|++|+.|.|+|+|++|+|
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 5789999999986 489999999999999999999998663 5678999999999999999999
Q ss_pred eeec
Q 005973 660 FQYY 663 (666)
Q Consensus 660 ve~~ 663 (666)
+|..
T Consensus 70 ~~~~ 73 (90)
T cd03707 70 LEKG 73 (90)
T ss_pred EecC
Confidence 9864
No 333
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.57 E-value=1.2e-07 Score=99.22 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=56.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-----
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN----- 343 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~----- 343 (666)
|+|+|.+|+|||||+|+|++....+ ...+++|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-------------------------------~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-------------------------------ccccccchhceeeeEEeccchhhh
Confidence 5899999999999999999543211 1124566655544443322
Q ss_pred ------------eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCC
Q 005973 344 ------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 344 ------------~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
..+.|+|+||..+ .....+..++.+|++|+|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2589999999432 44566777889999999999853
No 334
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.56 E-value=1.5e-07 Score=101.51 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=58.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC---
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--- 343 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--- 343 (666)
++|+|||.+|+|||||+|+|++....+ ...+++|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee-------------------------------cccccccccceEEEEEeccccc
Confidence 679999999999999999999543211 1124566655444333222
Q ss_pred --------------eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCC
Q 005973 344 --------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 344 --------------~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
..+.|+|+||... .....+..++.+|++|+|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 3589999999432 44566777899999999999963
No 335
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.54 E-value=8.6e-07 Score=93.23 Aligned_cols=144 Identities=17% Similarity=0.286 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-- 343 (666)
.++|.|+|..|+|||||+|.|+.......... .+.......+...+......+...+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 58999999999999999999995422211100 0000111223334444333444333
Q ss_pred eEEEEEeCCCccc-------------hHHH-----HHHh--c-------ccCCEEEEEEeCCCCccccccccchhHHHHH
Q 005973 344 YHVVVLDSPGHKD-------------FVPN-----MISG--A-------TQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (666)
Q Consensus 344 ~~i~liDTPGh~~-------------f~~~-----~~~~--~-------~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~ 396 (666)
..++|+||||+.+ |+.. +... . .+.+++|++|+.+... +.+...+.
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-------L~~~Di~~ 135 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-------LKPLDIEF 135 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-------S-HHHHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-------chHHHHHH
Confidence 4677999999543 1111 1000 0 1278999999986321 34455555
Q ss_pred HHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCc
Q 005973 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (666)
Q Consensus 397 l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~ 441 (666)
+..+..+ ++ +|-|+.|.|.. ..+.+..++..+...++..++
T Consensus 136 mk~Ls~~-vN-vIPvIaKaD~l--t~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 136 MKRLSKR-VN-VIPVIAKADTL--TPEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHTTT-SE-EEEEESTGGGS---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhccc-cc-EEeEEeccccc--CHHHHHHHHHHHHHHHHHcCc
Confidence 4444332 44 89999999998 467777788888888877664
No 336
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.54 E-value=2.8e-07 Score=102.24 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=97.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
+.++.++|+++|.-|+||||||-+|+...-. +. .-.+-.-|++- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~---------------------------~~-VP~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV---------------------------DA-VPRRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcc---------------------------cc-ccccCCccccC---CccCc
Confidence 4567899999999999999999999943110 00 00011223332 12222
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC-----CCcEEEEEeccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMD 416 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-----ip~iIVViNK~D 416 (666)
......|+||+...+-.......+++||++.+|.+.++..+- .......+-+++.++ +| +|+|.||+|
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~------D~ist~WLPlir~~~~~~~~~P-VILvGNK~d 126 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTV------DRISTKWLPLIRQLFGDYHETP-VILVGNKSD 126 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHh------hhhhhhhhhhhhcccCCCccCC-EEEEeeccC
Confidence 444578999998777666777889999999999998875321 222333444555554 56 999999999
Q ss_pred cccccchhhh----HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCC
Q 005973 417 AVQYSKDRFD----SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (666)
Q Consensus 417 lv~~~~e~~~----~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~ 463 (666)
.........+ .|..++.++ -..|.+||++-.|+.+..
T Consensus 127 ~~~~~~~s~e~~~~pim~~f~Ei----------EtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 127 NGDNENNSDEVNTLPIMIAFAEI----------ETCIECSALTLANVSELF 167 (625)
T ss_pred CccccccchhHHHHHHHHHhHHH----------HHHHhhhhhhhhhhHhhh
Confidence 8865433222 222222222 134788999988887743
No 337
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.54 E-value=1.1e-06 Score=99.72 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=70.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|.+|+|||||+|.|++....... ....++|. .........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vs-----------------------------s~~~~TTr-~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTD-----------------------------AFGMGTTS-VQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccccc-----------------------------CCCCCceE-EEEEEEEECCc
Confidence 4578999999999999999999964322110 01133333 22333345678
Q ss_pred EEEEEeCCCccch------HHH----HHHhcc--cCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcC---CCcE
Q 005973 345 HVVVLDSPGHKDF------VPN----MISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFG---VDQL 408 (666)
Q Consensus 345 ~i~liDTPGh~~f------~~~----~~~~~~--~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lg---ip~i 408 (666)
.+.||||||..+. ... ....+. .+|++|+|+....... .......+..+ ..+| ..++
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~-------D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR-------DSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------cHHHHHHHHHHHHHhCHHhHcCE
Confidence 8999999996542 112 222322 4799888886542210 01222233333 2234 2468
Q ss_pred EEEEecccccc
Q 005973 409 IVAVNKMDAVQ 419 (666)
Q Consensus 409 IVViNK~Dlv~ 419 (666)
|||+|..|...
T Consensus 240 IVVFThgD~lp 250 (763)
T TIGR00993 240 IVTLTHAASAP 250 (763)
T ss_pred EEEEeCCccCC
Confidence 99999999885
No 338
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.51 E-value=4.1e-07 Score=95.30 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..+.||++.|.-..-... --..+.-+.|+++.++.- +.. .+-..+... -|+|+||+|++++.
T Consensus 183 ~~~d~liIEnvGnLvcPa~f---dlge~~~v~vlsV~eg~d---------kpl---Kyp~~f~~A-DIVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASF---DLGEKHKVAVLSVTEGED---------KPL---KYPHMFAAA-SLMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccCCCcc---chhhceeEEEEECccccc---------cch---hccchhhcC-cEEEEEhHHcCccc
Confidence 34578899998841000000 011234567788776520 111 111222334 48899999998543
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...++.+.+.+..+. +..+++++||++|+|+.+
T Consensus 247 ~~dle~~~~~lr~ln-------p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 247 NFDVEKCIACAREVN-------PEIEIILISATSGEGMDQ 279 (290)
T ss_pred HHHHHHHHHHHHhhC-------CCCcEEEEECCCCCCHHH
Confidence 333444444444332 346899999999999965
No 339
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.50 E-value=1.8e-07 Score=91.47 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=55.9
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCC-EEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCc----EEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ----LIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD-~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~----iIVViNK~Dlv 418 (666)
..++||.+.| .+.-.. .....| +-|+|||.+.|+-. + + -+-|. =++||||.|++
T Consensus 97 ~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~-------P---------~-K~gP~i~~aDllVInK~DLa 155 (202)
T COG0378 97 LDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDI-------P---------R-KGGPGIFKADLLVINKTDLA 155 (202)
T ss_pred CCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCC-------c---------c-cCCCceeEeeEEEEehHHhH
Confidence 4788999999 111110 011244 89999999988411 0 0 01121 18899999998
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
++-...++.+.+..+++ . +..+||.+|+++|+|+.+
T Consensus 156 ~~v~~dlevm~~da~~~----n---p~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 156 PYVGADLEVMARDAKEV----N---PEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred HHhCccHHHHHHHHHHh----C---CCCCEEEEeCCCCcCHHH
Confidence 65444344444444443 2 467899999999999965
No 340
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=98.50 E-value=6.3e-07 Score=78.42 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=59.3
Q ss_pred eeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEE
Q 005973 585 ATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTS 659 (666)
Q Consensus 585 ~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ 659 (666)
+..|+|++.||++ +.||..||++.+|+++.+++|+|..| | .|.+|++|+.+.|+|+|.+|+|
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 5789999999996 58999999999999999999999866 2 2668999999999999999999
Q ss_pred eeec
Q 005973 660 FQYY 663 (666)
Q Consensus 660 ve~~ 663 (666)
+|..
T Consensus 70 ~~~g 73 (93)
T cd03706 70 LEKG 73 (93)
T ss_pred EeeC
Confidence 9874
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-06 Score=99.08 Aligned_cols=101 Identities=23% Similarity=0.197 Sum_probs=64.8
Q ss_pred EEEEEeCCCc---cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGH---KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh---~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+.|+|.||. ..+.......--.+|++|||+.|... ..++..++......+.|+|+|+.||+|.....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt---------lt~sek~Ff~~vs~~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT---------LTLSEKQFFHKVSEEKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH---------hHHHHHHHHHHhhccCCcEEEEechhhhhccc
Confidence 6889999994 34455555556679999999999764 23444444444445678899999999987643
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t 455 (666)
++-.+.++.++.. |.-..+....-.++.|||+.
T Consensus 278 ~ec~e~V~~Qi~e-L~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 278 PECKEDVLKQIHE-LSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHHHHHHh-cCcccHhhhcCeeEEEeccc
Confidence 4445666666542 22222222233568889653
No 342
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.47 E-value=4.8e-07 Score=98.60 Aligned_cols=161 Identities=18% Similarity=0.210 Sum_probs=92.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
-......+.|+|.+|+|||+|++.++.....+. ....+|-.+-...+++
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevq-------------------------------pYaFTTksL~vGH~dy 212 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-------------------------------PYAFTTKLLLVGHLDY 212 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccC-------------------------------Ccccccchhhhhhhhh
Confidence 344567899999999999999998884322211 1122344444445566
Q ss_pred CCeEEEEEeCCCccc------hHHHH--HHhcc-cCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 342 KNYHVVVLDSPGHKD------FVPNM--ISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 342 ~~~~i~liDTPGh~~------f~~~~--~~~~~-~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
.-.+++++||||.-+ ..-.| +.++. .--++++++|.+... |. .+..|..-.-.+--.+.-+++|+|+
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---Gy-Sva~QvkLfhsIKpLFaNK~~Ilvl 288 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GY-SVAAQVKLYHSIKPLFANKVTILVL 288 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CC-CHHHHHHHHHHhHHHhcCCceEEEe
Confidence 667899999999422 11111 22222 234688899987531 11 1233332221111222223389999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCC
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~ 463 (666)
||+|+... +-+.+-.+++.+.+..- .+++++.+|..+.+|+....
T Consensus 289 NK~D~m~~--edL~~~~~~ll~~~~~~----~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 289 NKIDAMRP--EDLDQKNQELLQTIIDD----GNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred ecccccCc--cccCHHHHHHHHHHHhc----cCceEEEecccchhceeeHH
Confidence 99998753 22222233333333322 34789999999999997643
No 343
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=5.4e-07 Score=89.64 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=86.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-CCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~~ 344 (666)
..+|.++|.+|+|||+|=..+.....+. ..+..|-|+|+.+..+.. ++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~------------------------------D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR------------------------------DTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh------------------------------hhhccCCcceeeehhhhhhhhh
Confidence 3579999999999999877666332111 122357788887777655 446
Q ss_pred EEEEEeCCCccchHHHHHH-----hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC-CCcEEEEEeccccc
Q 005973 345 HVVVLDSPGHKDFVPNMIS-----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAV 418 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~-----~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVViNK~Dlv 418 (666)
-+.+||+.|++.|+.+..+ -++..+++|+|+|+...+++.+++ .....+..+.... ..++++.+.|||++
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~----~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH----YYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH----HHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 7889999999999888776 356699999999999887766553 3333443333322 22488899999998
Q ss_pred cccc
Q 005973 419 QYSK 422 (666)
Q Consensus 419 ~~~~ 422 (666)
..+.
T Consensus 130 ~~d~ 133 (295)
T KOG3886|consen 130 QEDA 133 (295)
T ss_pred ccch
Confidence 6543
No 344
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.45 E-value=1e-06 Score=75.32 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=63.0
Q ss_pred eeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceeccCCceeEEeeccCcCccc
Q 005973 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
...|++++..+ .|.+ +.+||.+|+|++||.|.+...+...+|..|.. ...++++|.|||+|++. |+ .+++
T Consensus 2 ~a~VfK~~~d~~~g~i-~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~ 76 (83)
T cd04092 2 CALAFKVVHDPQRGPL-TFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT--GL--KQTR 76 (83)
T ss_pred EEEEEecccCCCCCeE-EEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEE--CC--CCcc
Confidence 45677888777 8888 89999999999999999877666677777754 35789999999999886 76 5588
Q ss_pred cccEEec
Q 005973 571 SGGVLCH 577 (666)
Q Consensus 571 ~G~VL~~ 577 (666)
.|++||.
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred cCCEEeC
Confidence 9999974
No 345
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.44 E-value=8.7e-07 Score=76.29 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=65.2
Q ss_pred CCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCc
Q 005973 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDV 566 (666)
Q Consensus 492 ~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~ 566 (666)
+.||.+.|+.+...+ .|.+ +++||.+|+|+.||.|.+.. ....+|..|... ..++++|.|||++++. |+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~l-a~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~--gl-- 74 (85)
T cd03690 1 ESELSGTVFKIERDDKGERL-AYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILT--GL-- 74 (85)
T ss_pred CCCcEEEEEEeEECCCCCeE-EEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEE--CC--
Confidence 368999999999988 8998 89999999999999998765 445677777643 4688999999999887 65
Q ss_pred CccccccEEe
Q 005973 567 SRVMSGGVLC 576 (666)
Q Consensus 567 ~~i~~G~VL~ 576 (666)
.++..|++|+
T Consensus 75 ~~~~~Gdtl~ 84 (85)
T cd03690 75 KGLRVGDVLG 84 (85)
T ss_pred CCCcCccccC
Confidence 5677899885
No 346
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.40 E-value=2.4e-06 Score=72.26 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=56.7
Q ss_pred CceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccc
Q 005973 494 PLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 494 p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
|-+|.|...+.-. .+ + +.|+|..|+|++|..| ......+|++||.++++++.|.+||.|+|.+.|.. ++..|
T Consensus 4 p~ki~Ilp~~vFr~~~-~-IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-A-IVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp SEEEEEEEEEEECTCC-E-EEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred ceEEEECCcCEEecCC-e-EEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 4455555444434 46 5 6779999999999999 34468899999999999999999999999999854 88899
Q ss_pred cEEe
Q 005973 573 GVLC 576 (666)
Q Consensus 573 ~VL~ 576 (666)
|+|-
T Consensus 77 DiLy 80 (81)
T PF14578_consen 77 DILY 80 (81)
T ss_dssp -EEE
T ss_pred CEEe
Confidence 9983
No 347
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.39 E-value=1.8e-06 Score=73.66 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=63.4
Q ss_pred eeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCcCccc
Q 005973 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
...|+++...+ .|.+ +++||.+|+|++||.|.+...+...+|..|... ..++++|.|||+++|. |+ .+++
T Consensus 2 ~a~Vfk~~~d~~~G~~-~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g~--~~~~ 76 (83)
T cd04088 2 VALVFKTIHDPFVGKL-SFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA--GL--KDTA 76 (83)
T ss_pred EEEEEEcccCCCCceE-EEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEE--CC--CCCc
Confidence 45677777777 8988 899999999999999998877777788887642 4789999999999996 76 4578
Q ss_pred cccEEec
Q 005973 571 SGGVLCH 577 (666)
Q Consensus 571 ~G~VL~~ 577 (666)
.|++|++
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred cCCEeeC
Confidence 8999863
No 348
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.34 E-value=1.4e-08 Score=97.41 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=102.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-- 343 (666)
..++.|+|.-++|||+++.+.++..-... ....|..+.....+.++.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~-------------------------------yRAtIgvdfalkVl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYH-------------------------------YRATIGVDFALKVLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHH-------------------------------HHHHHhHHHHHHHhccChHH
Confidence 46799999999999999999885421100 001112222222233333
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC-cEEEEEecccccccc
Q 005973 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 -~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVViNK~Dlv~~~ 421 (666)
.++.|||..|+++|..++.-+++.|.++.+|+|.+....+.....+......-+++- .|.| ++|+..||||.-.+.
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLp--ng~Pv~~vllankCd~e~~a 151 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLP--NGTPVPCVLLANKCDQEKSA 151 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCC--CCCcchheeccchhccChHh
Confidence 346799999999999999889999999999999987654432222211111111111 1222 268888999986532
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCC
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~ 463 (666)
. .+.-.++..+.++.||. .|+.+|++.+.|+.+..
T Consensus 152 ~---~~~~~~~d~f~kengf~----gwtets~Kenkni~Ea~ 186 (229)
T KOG4423|consen 152 K---NEATRQFDNFKKENGFE----GWTETSAKENKNIPEAQ 186 (229)
T ss_pred h---hhhHHHHHHHHhccCcc----ceeeeccccccChhHHH
Confidence 2 22345677788888874 58999999999998743
No 349
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.30 E-value=3.8e-06 Score=72.38 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=59.6
Q ss_pred EEeEee---cC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCcCccc
Q 005973 499 ICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 499 I~~v~~---~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
|+++.. .+ .|++ +++||.+|+|+.||.|+....+...+|..|... ..++++|.|||+|++. ++ .++.
T Consensus 3 vfKv~~~~~~~~~Gkl-a~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--gl--~~~~ 77 (85)
T cd03689 3 VFKIQANMDPAHRDRI-AFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--NP--GNFQ 77 (85)
T ss_pred EEEEecccCCCCCcEE-EEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--CC--CCcc
Confidence 455555 67 8998 899999999999999988776666677777542 4689999999999997 65 5677
Q ss_pred cccEEec
Q 005973 571 SGGVLCH 577 (666)
Q Consensus 571 ~G~VL~~ 577 (666)
.|++||+
T Consensus 78 ~Gdtl~~ 84 (85)
T cd03689 78 IGDTLTE 84 (85)
T ss_pred ccCEeeC
Confidence 9999984
No 350
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2.8e-06 Score=82.20 Aligned_cols=152 Identities=22% Similarity=0.251 Sum_probs=97.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++++++|..+.||+|++.+.+. +.... .-...-|+........-..+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~lt--geFe~---------------------------~y~at~Gv~~~pl~f~tn~g~ 58 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLT--GEFEK---------------------------TYPATLGVEVHPLLFDTNRGQ 58 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhc--cccee---------------------------cccCcceeEEeeeeeecccCc
Confidence 4578999999999999999999882 11100 000111222222221111234
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEeccccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViNK~Dlv~~~~ 422 (666)
.++..|||.|++.|....-.+..++.++|+++|.....+-.+ ..+.|-.+++.. ++| |+++.||.|.-.. +
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n------~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r-~ 130 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKN------VPRWHRDLVRVRENIP-IVLCGNKVDIKAR-K 130 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhc------chHHHHHHHHHhcCCC-eeeeccceecccc-c
Confidence 789999999999999888888899999999999986543322 233444444443 467 9999999997531 1
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
++..--.+.. ..++.++.+||+++.|...+
T Consensus 131 -----~k~k~v~~~r-----kknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 131 -----VKAKPVSFHR-----KKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred -----cccccceeee-----cccceeEEeecccccccccc
Confidence 1111111111 13567899999999999663
No 351
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.29 E-value=5.4e-06 Score=71.45 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=63.5
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec---CcccceeccCCceeEEeecc-CcCcc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRV 569 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i 569 (666)
|.+.|+++...+ .|.+ +++||.+|+|+.||.|++...++..+|..|... ..++++|.|||++++. .++ +..++
T Consensus 1 ~~~~Vfk~~~d~~~G~i-~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~ 78 (86)
T cd03699 1 LRALIFDSWYDPYRGVI-ALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDA 78 (86)
T ss_pred CEEEEEEeeccCCCCEE-EEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCcc
Confidence 467788888888 8988 899999999999999988766656667666643 4689999999998884 233 23567
Q ss_pred ccccEEec
Q 005973 570 MSGGVLCH 577 (666)
Q Consensus 570 ~~G~VL~~ 577 (666)
..|++||.
T Consensus 79 ~~Gdtl~~ 86 (86)
T cd03699 79 RVGDTITL 86 (86)
T ss_pred ccccEeeC
Confidence 88999974
No 352
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.28 E-value=3e-05 Score=72.59 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=88.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEE-EEEEEEEec-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFDS- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTi-d~~~~~~~~- 341 (666)
-+.-+|+++|.-++|||.++.+|++....+..... -|+ |+-...+++
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~-------------------------------pTiEDiY~~svet~ 55 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELH-------------------------------PTIEDIYVASVETD 55 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccc-------------------------------cchhhheeEeeecC
Confidence 35678999999999999999999965443322211 122 222233343
Q ss_pred --CCeEEEEEeCCCccchHHHH-HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHH-HH----HcCCCcEEEEEe
Q 005973 342 --KNYHVVVLDSPGHKDFVPNM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IR----SFGVDQLIVAVN 413 (666)
Q Consensus 342 --~~~~i~liDTPGh~~f~~~~-~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~l-l~----~lgip~iIVViN 413 (666)
....+.|.||.|........ ..++..+|+.+||++..+... | |..+.+.- +. .-.+| |+|..|
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f-----~rv~llKk~Idk~KdKKEvp-iVVLaN 126 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---F-----QRVELLKKEIDKHKDKKEVP-IVVLAN 126 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---H-----HHHHHHHHHHhhcccccccc-EEEEec
Confidence 23568899999988874333 445677999999999876521 1 22222211 11 12456 899999
Q ss_pred ccccccccchhhh-HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFD-SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~-~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|+... .+.. +..+ ...+ ...+..+.++|.....+.+
T Consensus 127 ~rdr~~p--~~vd~d~A~---~Wa~-----rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 127 KRDRAEP--REVDMDVAQ---IWAK-----REKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hhhcccc--hhcCHHHHH---HHHh-----hhheeEEEEEeccchhhhh
Confidence 9999632 1111 1111 1111 1345668888887766654
No 353
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.27 E-value=5.5e-06 Score=70.54 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=60.5
Q ss_pred eeEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCcCccccc
Q 005973 497 MPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 497 ~~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
..|+++...+.|.+ +.+||.+|+|++||.|++...+...+|..|... ..++++|.|||++++. ++ . +..|
T Consensus 3 a~vfK~~~~~~G~i-~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~--g~--~-~~~G 76 (81)
T cd04091 3 GLAFKLEEGRFGQL-TYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI--D-CASG 76 (81)
T ss_pred EEEEEeecCCCCCE-EEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEE--CC--C-cccC
Confidence 45666655557888 899999999999999999888777788787642 4689999999999865 66 3 7889
Q ss_pred cEEec
Q 005973 573 GVLCH 577 (666)
Q Consensus 573 ~VL~~ 577 (666)
++|++
T Consensus 77 dtl~~ 81 (81)
T cd04091 77 DTFTD 81 (81)
T ss_pred CEecC
Confidence 99863
No 354
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.27 E-value=5.4e-06 Score=71.30 Aligned_cols=77 Identities=25% Similarity=0.444 Sum_probs=61.4
Q ss_pred ceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC---ceEEEeeeee----cCcccceeccCCceeEEeeccCc
Q 005973 495 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDV 566 (666)
Q Consensus 495 ~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~---~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~ 566 (666)
|++.|+++...+ .|.+ +++||++|+|+.||.|++...+ ...+|..|.. ...++++|.|||++++. ++
T Consensus 1 ~~~~vfk~~~d~~~g~i-~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--gl-- 75 (86)
T cd03691 1 LQMLVTTLDYDDYVGRI-AIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--GI-- 75 (86)
T ss_pred CeEEEEEeEecCCCCeE-EEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--CC--
Confidence 578899998888 8888 8999999999999999876542 2456777743 24789999999998776 66
Q ss_pred CccccccEEe
Q 005973 567 SRVMSGGVLC 576 (666)
Q Consensus 567 ~~i~~G~VL~ 576 (666)
.++..|++|+
T Consensus 76 ~~~~~Gdtl~ 85 (86)
T cd03691 76 EDITIGDTIC 85 (86)
T ss_pred CCCcccceec
Confidence 4677899986
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.26 E-value=1.6e-06 Score=82.95 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=40.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
..+|+++|.+|+|||||+|+|++.... .....+|+|.+.....+ +..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~~ 148 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVC------------------------------KVAPIPGETKVWQYITL---MKR 148 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCce------------------------------eeCCCCCeeEeEEEEEc---CCC
Confidence 467999999999999999999854221 12234677776554332 235
Q ss_pred EEEEeCCCc
Q 005973 346 VVVLDSPGH 354 (666)
Q Consensus 346 i~liDTPGh 354 (666)
+.|+||||.
T Consensus 149 ~~liDtPGi 157 (157)
T cd01858 149 IYLIDCPGV 157 (157)
T ss_pred EEEEECcCC
Confidence 889999993
No 356
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.24 E-value=5.9e-06 Score=77.37 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=103.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccc--cccCeEEEEEEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE--RERGITMTVAVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e--~~~GiTid~~~~~~~~ 341 (666)
.-.++|+++|..-.|||||+-...+.. ..++ ...|+..--...++..
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~-------------------------------~de~~~q~~GvN~mdkt~~i~~ 66 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNE-------------------------------YDEEYTQTLGVNFMDKTVSIRG 66 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcch-------------------------------hHHHHHHHhCccceeeEEEecc
Confidence 346899999999999999987776321 1111 1234433333334444
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC---CCcEEEEEeccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAV 418 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg---ip~iIVViNK~Dlv 418 (666)
....+.|||..|+++|..+.--+-..+-++++++|.+....- .-..+..+.++.++ +| |+|.+|-|..
T Consensus 67 t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TL-------nSi~~WY~QAr~~NktAiP--ilvGTKyD~f 137 (205)
T KOG1673|consen 67 TDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTL-------NSIKEWYRQARGLNKTAIP--ILVGTKYDLF 137 (205)
T ss_pred eEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHH-------HHHHHHHHHHhccCCccce--EEeccchHhh
Confidence 445677999999999987776666778889999999876321 23345555666554 44 8899999964
Q ss_pred -cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 -QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 -~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+.+..+.+..+...+.+-++ .+.+.+|+-...|+.+
T Consensus 138 i~lp~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 138 IDLPPELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQK 176 (205)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHH
Confidence 3334444566777777776655 3679999999999965
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=1.7e-05 Score=79.41 Aligned_cols=144 Identities=21% Similarity=0.295 Sum_probs=85.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
-.+||.++|..|.|||||+|.|..... .+ ++ ..+...+.....+.+......++-++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v-~~---------------~s------~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHV-SD---------------SS------SSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHH-hh---------------cc------CCCcccCcccceEEEEeeeeeeeecce
Confidence 358999999999999999999984211 00 00 01122222223334444444555444
Q ss_pred -eEEEEEeCCCccc---------------------hHHHHHHhcc-------cCCEEEEEEeCCCCccccccccchhHHH
Q 005973 344 -YHVVVLDSPGHKD---------------------FVPNMISGAT-------QSDAAILVIDASVGSFEVGMNTAKGLTR 394 (666)
Q Consensus 344 -~~i~liDTPGh~~---------------------f~~~~~~~~~-------~aD~aIlVVDa~~g~~e~~~~~~~~qt~ 394 (666)
.++++|||||+-+ |++.-+...+ ...++++.|-.+... +.+.+.
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-------LrplDi 175 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-------LRPLDI 175 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-------cCcccH
Confidence 4577999999543 2222222111 166888888776432 456667
Q ss_pred HHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCc
Q 005973 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (666)
Q Consensus 395 e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~ 441 (666)
+.+..+.. +-++|-|+-|.|... -+...++++.+.+-+...++
T Consensus 176 eflkrLt~--vvNvvPVIakaDtlT--leEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 176 EFLKRLTE--VVNVVPVIAKADTLT--LEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHhh--hheeeeeEeeccccc--HHHHHHHHHHHHHHHHhcCc
Confidence 76654443 234788999999774 34445566777776666554
No 358
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.21 E-value=2.3e-06 Score=83.59 Aligned_cols=58 Identities=29% Similarity=0.373 Sum_probs=43.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+++|.+|+|||||+|+|++.... .....+|+|.......+.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~~--- 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHLD--- 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEeC---
Confidence 34578999999999999999999954221 122347888876665543
Q ss_pred eEEEEEeCCCc
Q 005973 344 YHVVVLDSPGH 354 (666)
Q Consensus 344 ~~i~liDTPGh 354 (666)
..+.|+||||.
T Consensus 162 ~~~~l~DtPGi 172 (172)
T cd04178 162 KKVKLLDSPGI 172 (172)
T ss_pred CCEEEEECcCC
Confidence 36899999993
No 359
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=7.8e-06 Score=86.30 Aligned_cols=171 Identities=20% Similarity=0.229 Sum_probs=106.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCC--CcchhhhcccccccccccCeEEEEEEE-EEe-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVA-YFD- 340 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~--g~~~~~~~~d~~~~e~~~GiTid~~~~-~~~- 340 (666)
..+-|.++|+-..||||+++.|+...-. ....|. ..-++..+|-...++..+|.++-+... .|.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dyp------------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYP------------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCC------------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 4566999999999999999999954211 011121 122344556666666667776644311 111
Q ss_pred ----------------cCC---eEEEEEeCCCcc-----------chHHHHHHhcccCCEEEEEEeCCCCccccccccch
Q 005973 341 ----------------SKN---YHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAK 390 (666)
Q Consensus 341 ----------------~~~---~~i~liDTPGh~-----------~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~ 390 (666)
..+ ..++||||||.- +|.....=.+..+|.+||++|+..-. +.
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-------Is 197 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-------IS 197 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-------cc
Confidence 000 368999999932 35444444567799999999998642 34
Q ss_pred hHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcC--cCCCCCcEEEeecccCCCcc
Q 005973 391 GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLV 460 (666)
Q Consensus 391 ~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~--~~~~~i~iIpvSA~tG~nI~ 460 (666)
..+.+.+..++...-. +-||+||.|.++. ++ +......++.+++ ++.+.+.-+.+-+.+..-+.
T Consensus 198 dEf~~vi~aLkG~Edk-iRVVLNKADqVdt--qq---LmRVyGALmWslgkv~nTpev~rvYigSfw~hPl~ 263 (532)
T KOG1954|consen 198 DEFKRVIDALKGHEDK-IRVVLNKADQVDT--QQ---LMRVYGALMWSLGKVMNTPEVSRVYIGSFWDHPLQ 263 (532)
T ss_pred HHHHHHHHHhhCCcce-eEEEeccccccCH--HH---HHHHHHHHHHhhhhhcCCCcceeEEeeccccCccc
Confidence 6778888888777666 8899999999852 22 3444455555443 22244555666665554443
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.19 E-value=1.4e-05 Score=85.65 Aligned_cols=94 Identities=13% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCeEEEEEeCCCccchH-------HHHHHhc-----ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEE
Q 005973 342 KNYHVVVLDSPGHKDFV-------PNMISGA-----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~-------~~~~~~~-----~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI 409 (666)
.++.++||||||....- ..+...+ ..++..+||+||+.+. .............++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 56789999999954321 2222211 2478899999999762 1111222223334443 6
Q ss_pred EEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 410 VViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+||+|.... .-.+...+ ...+ +|+..++ +|+++++
T Consensus 264 iIlTKlD~t~~----~G~~l~~~----~~~~-----~Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 264 IILTKLDGTAK----GGVVFAIA----DELG-----IPIKFIG--VGEGIDD 300 (318)
T ss_pred EEEECCCCCCC----ccHHHHHH----HHHC-----CCEEEEe--CCCChhh
Confidence 78999996531 21222222 2223 5777777 8998865
No 361
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.19 E-value=3.7e-06 Score=84.64 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=63.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...-+|++||.+.+|||||+..++........ ..-+|..-....+.+++
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~-------------------------------yeFTTLtcIpGvi~y~g 108 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAAS-------------------------------YEFTTLTCIPGVIHYNG 108 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhc-------------------------------eeeeEEEeecceEEecC
Confidence 34578999999999999999999843211110 11346666666778889
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCC
Q 005973 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (666)
Q Consensus 344 ~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g 380 (666)
..+.++|.||... -.+..+..++.||+++.|+||+..
T Consensus 109 a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 109 ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 9999999999543 234455667789999999999986
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=98.19 E-value=7.7e-06 Score=88.01 Aligned_cols=93 Identities=23% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCeEEEEEeCCCccc----hHHHHHH--hcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHHHHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKD----FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~----f~~~~~~--~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~lgip~iIVViNK 414 (666)
.++.++||||||... ++..+.. ....+|..+||+|+..+. ...+.+ .+....++. -+++||
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~----------d~~~~a~~f~~~~~~~--giIlTK 288 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN----------DAVEQAREFNEAVGID--GVILTK 288 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch----------hHHHHHHHHHhcCCCC--EEEEee
Confidence 356799999999543 2222221 123589999999997651 222222 223345665 567999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|.... .-.+..... .. ..|+.+++ +|+++.+
T Consensus 289 lD~~~~----~G~~ls~~~----~~-----~~Pi~~i~--~Gq~v~D 320 (336)
T PRK14974 289 VDADAK----GGAALSIAY----VI-----GKPILFLG--VGQGYDD 320 (336)
T ss_pred ecCCCC----ccHHHHHHH----HH-----CcCEEEEe--CCCChhh
Confidence 998632 111222111 12 24677776 7999865
No 363
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.11 E-value=4.8e-05 Score=81.06 Aligned_cols=145 Identities=20% Similarity=0.335 Sum_probs=89.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccc-cccCeEEEEEEEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e-~~~GiTid~~~~~~~~~ 342 (666)
--.++|.++|..|.|||||+|.|++..- .... ..+..... ..+++.+......+.-+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~ 78 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDET---------------------EIDDIRAEGTSPTLEIKITKAELEED 78 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc-cCCC---------------------CccCcccccCCcceEEEeeeeeeecC
Confidence 3568999999999999999999996511 1100 00111111 33555555555555555
Q ss_pred Ce--EEEEEeCCCccchHH-------------HHHH-hc--------------ccCCEEEEEEeCCCCccccccccchhH
Q 005973 343 NY--HVVVLDSPGHKDFVP-------------NMIS-GA--------------TQSDAAILVIDASVGSFEVGMNTAKGL 392 (666)
Q Consensus 343 ~~--~i~liDTPGh~~f~~-------------~~~~-~~--------------~~aD~aIlVVDa~~g~~e~~~~~~~~q 392 (666)
+. ++++|||||+-+++. .... ++ ...+++|+.+-.+.. .+.+.
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-------~l~~~ 151 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-------GLKPL 151 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-------CCCHH
Confidence 54 567899999655321 1111 11 116789999975432 14556
Q ss_pred HHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCc
Q 005973 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (666)
Q Consensus 393 t~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~ 441 (666)
..+.+.-+.. .+. +|-||-|.|.. ..+.+...++.+.+.+...++
T Consensus 152 DIe~Mk~ls~-~vN-lIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 152 DIEAMKRLSK-RVN-LIPVIAKADTL--TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHHhc-ccC-eeeeeeccccC--CHHHHHHHHHHHHHHHHHhCC
Confidence 6665544433 234 89999999988 456677788888888776654
No 364
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.11 E-value=8.9e-06 Score=77.60 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=56.8
Q ss_pred HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCc
Q 005973 362 ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (666)
Q Consensus 362 ~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~ 441 (666)
...+..+|++|+|+|+..+.. .+..+...++...+.| +|+|+||+|+.+ .+.... +..+....
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~--------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~----~~~~~~~~-- 69 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPEL--------TRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEK----WKSIKESE-- 69 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcc--------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHH----HHHHHHhC--
Confidence 334456999999999987532 2233444445556777 899999999963 222111 11222221
Q ss_pred CCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcC
Q 005973 442 KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR 485 (666)
Q Consensus 442 ~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~ 485 (666)
..+++++||++|.|+.+ |++.|..+.
T Consensus 70 ---~~~~~~iSa~~~~gi~~---------------L~~~l~~~~ 95 (156)
T cd01859 70 ---GIPVVYVSAKERLGTKI---------------LRRTIKELA 95 (156)
T ss_pred ---CCcEEEEEccccccHHH---------------HHHHHHHHH
Confidence 24689999999999965 777775543
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.09 E-value=2.4e-05 Score=78.14 Aligned_cols=67 Identities=24% Similarity=0.443 Sum_probs=42.8
Q ss_pred CCeEEEEEeCCCccchHHH----HHH--hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 KNYHVVVLDSPGHKDFVPN----MIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~----~~~--~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
+++.++||||||....... +.. .....+-++||++|+.+ .............+++.. ++++|+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~---------~~~~~~~~~~~~~~~~~~--lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG---------QEDLEQALAFYEAFGIDG--LILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG---------GHHHHHHHHHHHHSSTCE--EEEEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC---------hHHHHHHHHHhhcccCce--EEEEee
Confidence 4577999999995443222 211 12358899999999875 123344555556677774 459999
Q ss_pred cccc
Q 005973 416 DAVQ 419 (666)
Q Consensus 416 Dlv~ 419 (666)
|...
T Consensus 151 Det~ 154 (196)
T PF00448_consen 151 DETA 154 (196)
T ss_dssp TSSS
T ss_pred cCCC
Confidence 9863
No 366
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.09 E-value=2.4e-05 Score=81.40 Aligned_cols=53 Identities=32% Similarity=0.490 Sum_probs=43.5
Q ss_pred cCCCcEEEEEeccccc-------cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 403 FGVDQLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 403 lgip~iIVViNK~Dlv-------~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|++ ++||++|+|.+ ++..++|+.|...++.|+-.+|. ..|.+|++...|++-
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNIDL 280 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchHH
Confidence 4666 89999999984 35567889999999999977774 569999999999954
No 367
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.08 E-value=8.7e-06 Score=77.92 Aligned_cols=82 Identities=17% Similarity=0.026 Sum_probs=51.2
Q ss_pred HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccccchhhhHHHHHHhhhhhh
Q 005973 361 MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 438 (666)
Q Consensus 361 ~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~ 438 (666)
.+..+..+|++|+|+|+..+. ..........+... +.| +|+|+||+|+.+ ++........+.+ .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~--------~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~--~~~~~~~~~~~~~---~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM--------GTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP--TWVTARWVKILSK---E 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc--------cccCHHHHHHHHhccCCCC-EEEEEEchhcCC--HHHHHHHHHHHhc---C
Confidence 356788899999999998762 12233344444433 366 899999999974 2222222222221 1
Q ss_pred cCcCCCCCcEEEeecccCCCccc
Q 005973 439 CGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 439 ~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+. +.++++||+.+.|+.+
T Consensus 68 ~~-----~~~~~iSa~~~~~~~~ 85 (157)
T cd01858 68 YP-----TIAFHASINNPFGKGS 85 (157)
T ss_pred Cc-----EEEEEeeccccccHHH
Confidence 11 2358999999999955
No 368
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.08 E-value=8.8e-06 Score=82.34 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=62.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.-+|.++|-+.+|||||+..|++....+... -++|.......+.+++-.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasy-------------------------------efttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAY-------------------------------EFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccc-------------------------------cceeEEEecceEeccccc
Confidence 3489999999999999999998543322211 245555555666678889
Q ss_pred EEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCC
Q 005973 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (666)
Q Consensus 346 i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g 380 (666)
+.|.|.||..+ -.+..+.-++.+.++++|+|+-.+
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 99999999544 234556667889999999999775
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.04 E-value=0.00012 Score=76.78 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=53.4
Q ss_pred CCeEEEEEeCCCccchHHHHH-------Hhc-----ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEE
Q 005973 342 KNYHVVVLDSPGHKDFVPNMI-------SGA-----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~-------~~~-----~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI 409 (666)
.++.++||||||....-...+ ... ..+|..+||+|+..+. ........+.+..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 567899999999654322221 111 1389999999998651 1122223333445554 6
Q ss_pred EEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 410 VViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+++||+|.... +-.+.. +....+ +|+..++ +|+++++
T Consensus 222 ~IlTKlDe~~~----~G~~l~----~~~~~~-----~Pi~~~~--~Gq~~~d 258 (272)
T TIGR00064 222 IILTKLDGTAK----GGIILS----IAYELK-----LPIKFIG--VGEKIDD 258 (272)
T ss_pred EEEEccCCCCC----ccHHHH----HHHHHC-----cCEEEEe--CCCChHh
Confidence 78999997632 111211 111222 4666666 8888755
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.99 E-value=2.1e-05 Score=73.93 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=54.1
Q ss_pred HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccccchhhhHHHHHHhhhh
Q 005973 359 PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 436 (666)
Q Consensus 359 ~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l 436 (666)
......+..+|++|+|+|+..+.. .+..+...++... +.| +|+|+||+|+.. ++... .+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~--------~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~--~~~~~----~~~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL--------FRPPDLERYVKEVDPRKK-NILLLNKADLLT--EEQRK----AWAEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc--------cCCHHHHHHHHhccCCCc-EEEEEechhcCC--HHHHH----HHHHHH
Confidence 456677889999999999987632 2333445555555 677 899999999973 22222 233334
Q ss_pred hhcCcCCCCCcEEEeecccCCCc
Q 005973 437 RSCGFKDASLTWIPLSALENQNL 459 (666)
Q Consensus 437 ~~~~~~~~~i~iIpvSA~tG~nI 459 (666)
+..+ .+++++||++|.+.
T Consensus 68 ~~~~-----~~ii~iSa~~~~~~ 85 (141)
T cd01857 68 KKEG-----IVVVFFSALKENAT 85 (141)
T ss_pred HhcC-----CeEEEEEecCCCcE
Confidence 3333 36799999998863
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=1e-05 Score=77.32 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
...+++++|++|+|||||+|+|+..... .....+|+|.+.....+. .
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~---~ 145 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKL------------------------------KVGNVPGTTTSQQEVKLD---N 145 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccc------------------------------cccCCCCcccceEEEEec---C
Confidence 3577999999999999999999953221 122346778777665543 4
Q ss_pred EEEEEeCCCc
Q 005973 345 HVVVLDSPGH 354 (666)
Q Consensus 345 ~i~liDTPGh 354 (666)
.+.|+||||.
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6999999994
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.97 E-value=5.6e-06 Score=79.66 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..++++|++|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999964
No 373
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.97 E-value=9.3e-05 Score=75.43 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+...|+|+|.+++|||||+|+|++...... + ........+|+-+-...... ..+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~----------------------~--~~~~~~~T~gi~~~~~~~~~-~~~~ 60 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFD----------------------V--MDTSQQTTKGIWMWSVPFKL-GKEH 60 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeE----------------------e--cCCCCCCccceEEEeccccC-CCcc
Confidence 456799999999999999999995421110 0 00011122333322211111 2467
Q ss_pred EEEEEeCCCccc------hHHHHHHhccc--CCEEEEEEeCCC
Q 005973 345 HVVVLDSPGHKD------FVPNMISGATQ--SDAAILVIDASV 379 (666)
Q Consensus 345 ~i~liDTPGh~~------f~~~~~~~~~~--aD~aIlVVDa~~ 379 (666)
.++|+||||..+ .....+.++.. ++++|+.++...
T Consensus 61 ~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 61 AVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred eEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 899999999533 22333444444 999999998864
No 374
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=97.95 E-value=3e-06 Score=58.19 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=23.6
Q ss_pred CcceeecccccCCCCCcccccccCCCCCc
Q 005973 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (666)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~~~~ 76 (666)
.|.|.|+.|+|.|..+...|.|||++|.+
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 46799999999999999999999999863
No 375
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.3e-05 Score=83.88 Aligned_cols=83 Identities=24% Similarity=0.194 Sum_probs=56.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe-----
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 340 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~----- 340 (666)
.++++|+|-||+|||||+|+|+.....+... +-.||++......
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNY-------------------------------PF~TIePN~Giv~v~d~r 50 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANY-------------------------------PFCTIEPNVGVVYVPDCR 50 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCC-------------------------------CcccccCCeeEEecCchH
Confidence 4689999999999999999999543222111 2233332222110
Q ss_pred -------------cCCeEEEEEeCCCcc-------chHHHHHHhcccCCEEEEEEeCCC
Q 005973 341 -------------SKNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 341 -------------~~~~~i~liDTPGh~-------~f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
.....+.|+|.+|.. -+....+..++.+|++++||||..
T Consensus 51 l~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 51 LDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred HHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 012347799999943 366777888899999999999974
No 376
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.94 E-value=1.4e-05 Score=78.95 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=42.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.+++++|.+|+|||||+|+|+.....-... .........+|+|.+.....+.. .+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~----------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL----------------------KDLLTTSPIPGTTLDLIKIPLGN---GK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc----------------------ccccccCCCCCeeeeeEEEecCC---CC
Confidence 569999999999999999999542211000 00112234468898877666542 58
Q ss_pred EEEeCCCc
Q 005973 347 VVLDSPGH 354 (666)
Q Consensus 347 ~liDTPGh 354 (666)
.|+||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 377
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=1.2e-05 Score=86.30 Aligned_cols=56 Identities=30% Similarity=0.410 Sum_probs=43.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
...++.|+|.+|+|||||||+|++..... ..+.+|+|.......++.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~------------------------------~s~~PG~Tk~~q~i~~~~--- 177 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK------------------------------TSNRPGTTKGIQWIKLDD--- 177 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee------------------------------eCCCCceecceEEEEcCC---
Confidence 45779999999999999999999654422 233468898877776554
Q ss_pred EEEEEeCCC
Q 005973 345 HVVVLDSPG 353 (666)
Q Consensus 345 ~i~liDTPG 353 (666)
.+.|+||||
T Consensus 178 ~i~LlDtPG 186 (322)
T COG1161 178 GIYLLDTPG 186 (322)
T ss_pred CeEEecCCC
Confidence 389999999
No 378
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.93 E-value=2.4e-05 Score=76.07 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCc-cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHH
Q 005973 352 PGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (666)
Q Consensus 352 PGh-~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~ 430 (666)
||| .+.+.++...+..||++|+|+|+..+.. ....+.+..+ .+.| +|+|+||+|+.+ ++...
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~--------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~--~~~~~---- 65 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLS--------SRNPLLEKIL--GNKP-RIIVLNKADLAD--PKKTK---- 65 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccC--------cCChhhHhHh--cCCC-EEEEEehhhcCC--hHHHH----
Confidence 776 4567788888999999999999987531 1112222222 2555 899999999963 22211
Q ss_pred HHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 431 el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....+++..+ ..++++||+++.|+.+
T Consensus 66 ~~~~~~~~~~-----~~vi~iSa~~~~gi~~ 91 (171)
T cd01856 66 KWLKYFESKG-----EKVLFVNAKSGKGVKK 91 (171)
T ss_pred HHHHHHHhcC-----CeEEEEECCCcccHHH
Confidence 1112222211 3579999999999965
No 379
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.91 E-value=1.5e-05 Score=74.99 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+++++|.+|+|||||+|+|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999843
No 380
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.90 E-value=0.0001 Score=65.05 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=63.7
Q ss_pred ccEEecCCCCcceeeEEEEEEEEecCC-CCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEE
Q 005973 572 GGVLCHPDFPVAIATHLELKVLVLDFA-PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (666)
Q Consensus 572 G~VL~~~~~p~~~~~~F~a~i~vl~~~-~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v 650 (666)
|++|+.++...+ ...|.+++.++... .|+..++++++|+++..++|+|.- ++. ..+.+|+.+.+
T Consensus 1 G~vl~~~~~~~~-~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~l----l~~----------~~~~pg~~~~a 65 (97)
T cd04094 1 GDVLADPGSLLP-TRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVL----LDR----------DELAPGEEALA 65 (97)
T ss_pred CCEEecCCCcCC-ceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEe----CCc----------cccCCCCEEEE
Confidence 789999876544 68999999888743 699999999999999999999973 331 25899999999
Q ss_pred EEEeCceEEeee
Q 005973 651 EVNQSQNTSFQY 662 (666)
Q Consensus 651 ~l~l~~pI~ve~ 662 (666)
+|+|++||+++.
T Consensus 66 ~l~l~~pl~~~~ 77 (97)
T cd04094 66 QLRLEEPLVALR 77 (97)
T ss_pred EEEECCcEeecC
Confidence 999999998764
No 381
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=3.2e-05 Score=74.39 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++++|..|+|||||+++|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999865
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=97.90 E-value=1.6e-05 Score=86.16 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=40.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEE
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~l 348 (666)
++|+|.+|+|||||+|+|+......+... + ....+.+.+|.......+..+ ..|
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i-------s----------------~~~~rGrHTT~~~~l~~l~~~---~~l 261 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDV-------S----------------DNSGLGQHTTTAARLYHFPHG---GDL 261 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccc-------c----------------CcCCCCcCceeeEEEEEecCC---CEE
Confidence 79999999999999999996533211110 0 111233456766666665433 359
Q ss_pred EeCCCccch
Q 005973 349 LDSPGHKDF 357 (666)
Q Consensus 349 iDTPGh~~f 357 (666)
+||||...|
T Consensus 262 iDTPGir~~ 270 (347)
T PRK12288 262 IDSPGVREF 270 (347)
T ss_pred EECCCCCcc
Confidence 999997665
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.89 E-value=7.5e-05 Score=82.61 Aligned_cols=65 Identities=28% Similarity=0.514 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCccch----HHHHHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDF----VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f----~~~~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVViNK 414 (666)
.++.++||||||.... +..+... +..+|.++||+||..|. .....+... ...++. -+++||
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq----------~a~~~a~~F~~~~~~~--g~IlTK 248 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ----------AAEAQAKAFKDSVDVG--SVIITK 248 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh----------hHHHHHHHHHhccCCc--EEEEEC
Confidence 3678999999995433 3333222 34578999999998761 112222222 223443 678999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
+|..
T Consensus 249 lD~~ 252 (429)
T TIGR01425 249 LDGH 252 (429)
T ss_pred ccCC
Confidence 9975
No 384
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.88 E-value=2.5e-05 Score=82.60 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|.+|+|||||+|+|++.... .....+|+|........ +.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIKL---GK 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEEe---CC
Confidence 4688999999999999999999953221 11223688888765443 24
Q ss_pred EEEEEeCCCc
Q 005973 345 HVVVLDSPGH 354 (666)
Q Consensus 345 ~i~liDTPGh 354 (666)
.+.|+||||.
T Consensus 167 ~~~l~DtPGi 176 (287)
T PRK09563 167 GLELLDTPGI 176 (287)
T ss_pred cEEEEECCCc
Confidence 6889999995
No 385
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.86 E-value=4.7e-05 Score=75.16 Aligned_cols=91 Identities=19% Similarity=0.077 Sum_probs=53.2
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHh-hh
Q 005973 357 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG-TF 435 (666)
Q Consensus 357 f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~-~~ 435 (666)
|...+..++..+|++|+|+|+.....+ ...+ + .....+.| +|+|+||+|+..... ....+...+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--------~~~~-l-~~~~~~~~-~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--------LIPR-L-RLFGGNNP-VILVGNKIDLLPKDK-NLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--------cchh-H-HHhcCCCc-EEEEEEchhcCCCCC-CHHHHHHHHHHHH
Confidence 566677778889999999999864211 1111 1 12234566 899999999974222 1111111110 01
Q ss_pred hhhcCcCCCCCcEEEeecccCCCccc
Q 005973 436 LRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 436 l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+..++. ..+++++||++|+|+.+
T Consensus 92 ~~~~~~~--~~~i~~vSA~~~~gi~e 115 (190)
T cd01855 92 AAGLGLK--PKDVILISAKKGWGVEE 115 (190)
T ss_pred HhhcCCC--cccEEEEECCCCCCHHH
Confidence 1222221 12579999999999965
No 386
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.84 E-value=2.8e-05 Score=81.76 Aligned_cols=57 Identities=28% Similarity=0.263 Sum_probs=41.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|.+|+|||||+|+|++.... .....+|+|.......+. .
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~~---~ 163 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVA------------------------------KVGNRPGVTKGQQWIKLS---D 163 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeecceEEEEeC---C
Confidence 4688999999999999999999843211 111236777776554442 3
Q ss_pred EEEEEeCCCc
Q 005973 345 HVVVLDSPGH 354 (666)
Q Consensus 345 ~i~liDTPGh 354 (666)
.+.|+||||.
T Consensus 164 ~~~l~DtPG~ 173 (276)
T TIGR03596 164 GLELLDTPGI 173 (276)
T ss_pred CEEEEECCCc
Confidence 5899999996
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=2.5e-05 Score=81.83 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=41.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
..+++|++|+|||||+|+|......- ....+...+ +.+.+|.......+..++ .
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~-------t~eIS~~~~----------------rGkHTTt~~~l~~l~~gG---~ 219 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQK-------TGEISEKLG----------------RGRHTTTHVELFPLPGGG---W 219 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhh-------hhhhcccCC----------------CCCCccceEEEEEcCCCC---E
Confidence 58899999999999999998532211 111111122 335667777766665433 6
Q ss_pred EEeCCCccch
Q 005973 348 VLDSPGHKDF 357 (666)
Q Consensus 348 liDTPGh~~f 357 (666)
|+||||+..|
T Consensus 220 iiDTPGf~~~ 229 (301)
T COG1162 220 IIDTPGFRSL 229 (301)
T ss_pred EEeCCCCCcc
Confidence 8999997655
No 388
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.82 E-value=3.7e-05 Score=74.72 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=40.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++++++|.+|+|||||+|+|+..... ......|+|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 3478999999999999999999943111 112234677776665553 4
Q ss_pred EEEEEeCCCc
Q 005973 345 HVVVLDSPGH 354 (666)
Q Consensus 345 ~i~liDTPGh 354 (666)
.+.|+||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.81 E-value=2.7e-05 Score=80.41 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
.++|+|++|+|||||+|+|+......+... .....+.+.+|.+.....+. . ..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i-----------------------~~~~~~G~hTT~~~~l~~l~-~---~~ 174 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDI-----------------------SSKLGLGKHTTTHVELFHFH-G---GL 174 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccce-----------------------eccCCCCCCcCCceEEEEcC-C---cE
Confidence 589999999999999999996422211000 01122335577776666652 2 37
Q ss_pred EEeCCCccch
Q 005973 348 VLDSPGHKDF 357 (666)
Q Consensus 348 liDTPGh~~f 357 (666)
|+||||...+
T Consensus 175 liDtPG~~~~ 184 (245)
T TIGR00157 175 IADTPGFNEF 184 (245)
T ss_pred EEeCCCcccc
Confidence 9999996543
No 390
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.81 E-value=4.6e-05 Score=78.71 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=54.1
Q ss_pred HhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcC
Q 005973 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (666)
Q Consensus 363 ~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~ 442 (666)
..++.+|.+++|+|+..+.+- + ......+..+...++| +|+|+||+|+.+. .. ...+....++..+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s-----~-~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~--~~---~~~~~~~~~~~~g-- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELS-----L-NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD--ED---MEKEQLDIYRNIG-- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCCC-----H-HHHHHHHHHHHHCCCC-EEEEEECcccCCC--HH---HHHHHHHHHHHCC--
Confidence 467889999999999875321 1 1233444455667888 8999999999742 11 1112222333334
Q ss_pred CCCCcEEEeecccCCCccc
Q 005973 443 DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 443 ~~~i~iIpvSA~tG~nI~e 461 (666)
++++.+||++|.|+.+
T Consensus 98 ---~~v~~~SAktg~gi~e 113 (245)
T TIGR00157 98 ---YQVLMTSSKNQDGLKE 113 (245)
T ss_pred ---CeEEEEecCCchhHHH
Confidence 4789999999999966
No 391
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.80 E-value=0.00053 Score=77.02 Aligned_cols=51 Identities=31% Similarity=0.479 Sum_probs=41.2
Q ss_pred CCCcEEEEEeccccc-------cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcc
Q 005973 404 GVDQLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (666)
Q Consensus 404 gip~iIVViNK~Dlv-------~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~ 460 (666)
|+| |+||++|.|.. +|.+++|+.|.+.|+.++-.+|. ..|.+|.+...|+.
T Consensus 196 Gip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~ 253 (472)
T PF05783_consen 196 GIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLD 253 (472)
T ss_pred Ccc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHH
Confidence 566 99999999975 36677888899999999877663 56889999988884
No 392
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.80 E-value=4.5e-05 Score=80.14 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=56.3
Q ss_pred CCcc-chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHH
Q 005973 352 PGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (666)
Q Consensus 352 PGh~-~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~ 430 (666)
|||. +..+.+...+..+|++|+|+||..+.. ........++ .+.| +|+|+||+|+++ ........
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~--------~~~~~i~~~l--~~kp-~IiVlNK~DL~~--~~~~~~~~- 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS--------SRNPMIDEIR--GNKP-RLIVLNKADLAD--PAVTKQWL- 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------CCChhHHHHH--CCCC-EEEEEEccccCC--HHHHHHHH-
Confidence 8874 466778888899999999999986531 1111222222 2455 899999999973 22222222
Q ss_pred HHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 431 el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..++..+ .+++++||+++.|+.+
T Consensus 71 ---~~~~~~~-----~~vi~iSa~~~~gi~~ 93 (276)
T TIGR03596 71 ---KYFEEKG-----IKALAINAKKGKGVKK 93 (276)
T ss_pred ---HHHHHcC-----CeEEEEECCCcccHHH
Confidence 2222222 3579999999999955
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.80 E-value=0.00025 Score=68.86 Aligned_cols=67 Identities=22% Similarity=0.439 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 KNYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~~~~i~liDTPGh~~----f~~~~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
.++.++|+||||... ....+... +...|.+++|+|+..+ .........+....++ .-+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---------~~~~~~~~~~~~~~~~--~~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---------QDAVNQAKAFNEALGI--TGVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---------hHHHHHHHHHHhhCCC--CEEEEECC
Confidence 356789999999753 33332221 2348999999999653 1222333344445565 35678999
Q ss_pred cccc
Q 005973 416 DAVQ 419 (666)
Q Consensus 416 Dlv~ 419 (666)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9874
No 394
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.79 E-value=6.8e-05 Score=71.64 Aligned_cols=74 Identities=26% Similarity=0.225 Sum_probs=45.8
Q ss_pred CEEEEEEeCCCCccccccccchhHHHHHH-HHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCc
Q 005973 369 DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 447 (666)
Q Consensus 369 D~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~ 447 (666)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|++. ++........+ .... ...
T Consensus 1 Dvvl~VvD~~~p~~--------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~~~~~----~~~~----~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLG--------TRSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKWLAYL----RHSY----PTI 61 (155)
T ss_pred CEEEEEEeccCCcc--------ccCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHHHHHH----HhhC----Cce
Confidence 78999999987531 1122222 345556777 999999999974 22222221112 1111 135
Q ss_pred EEEeecccCCCccc
Q 005973 448 WIPLSALENQNLVT 461 (666)
Q Consensus 448 iIpvSA~tG~nI~e 461 (666)
++++||++|.|+.+
T Consensus 62 ii~vSa~~~~gi~~ 75 (155)
T cd01849 62 PFKISATNGQGIEK 75 (155)
T ss_pred EEEEeccCCcChhh
Confidence 79999999999965
No 395
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.78 E-value=4.9e-05 Score=82.39 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=55.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC-ccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---- 341 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~-~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~---- 341 (666)
++++|+|.+|+|||||+++|+.... .+... +..|+++....+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-------------------------------pftTi~p~~g~v~v~d~r 51 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-------------------------------PFTTIEPNAGVVNPSDPR 51 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-------------------------------CCCCCCCceeEEEechhH
Confidence 6899999999999999999996533 22111 12222222222111
Q ss_pred -------------CCeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCC
Q 005973 342 -------------KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 342 -------------~~~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
....+.++|.||... .....+..++.+|++++||++..
T Consensus 52 ~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 52 LDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred HHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 234688999999533 55677888899999999999864
No 396
>PRK12289 GTPase RsgA; Reviewed
Probab=97.78 E-value=2.8e-05 Score=84.26 Aligned_cols=64 Identities=23% Similarity=0.225 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
.++|+|++|+|||||+|+|+.......... + ....+.+.+|.+.....+..+ ..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~v-------s----------------~~~~rGrHTT~~~~l~~l~~g---~~ 227 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKV-------S----------------GKLGRGRHTTRHVELFELPNG---GL 227 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccc-------c----------------CCCCCCCCcCceeEEEECCCC---cE
Confidence 389999999999999999995432211110 0 111233456777655544322 27
Q ss_pred EEeCCCccch
Q 005973 348 VLDSPGHKDF 357 (666)
Q Consensus 348 liDTPGh~~f 357 (666)
|+||||...+
T Consensus 228 liDTPG~~~~ 237 (352)
T PRK12289 228 LADTPGFNQP 237 (352)
T ss_pred EEeCCCcccc
Confidence 9999997554
No 397
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00027 Score=75.90 Aligned_cols=144 Identities=18% Similarity=0.291 Sum_probs=84.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
-.+++.++|..|.|||||+|.|+..... .... ...........+++......++-++
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~-~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLS-GNRE---------------------VPGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhcc-CCcc---------------------cCCcccCccccceeeeeeeeecCCCe
Confidence 3589999999999999999999854110 0000 0111112222344444444444444
Q ss_pred -eEEEEEeCCCccch-------------HHHHH-Hh-----------cc--cCCEEEEEEeCCCCccccccccchhHHHH
Q 005973 344 -YHVVVLDSPGHKDF-------------VPNMI-SG-----------AT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (666)
Q Consensus 344 -~~i~liDTPGh~~f-------------~~~~~-~~-----------~~--~aD~aIlVVDa~~g~~e~~~~~~~~qt~e 395 (666)
.+++++||||+.++ +.... .+ .. ..+++|+.|..... ++.+...+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-------gL~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-------GLKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-------CCcHhhHH
Confidence 45778999996553 11111 11 11 37889999976432 14456655
Q ss_pred HHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCc
Q 005973 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (666)
Q Consensus 396 ~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~ 441 (666)
.+.-+.. .++ +|-||-|.|... .+.+..++..+...+...++
T Consensus 151 ~Mk~l~~-~vN-iIPVI~KaD~lT--~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 151 FMKKLSK-KVN-LIPVIAKADTLT--KDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHhc-ccc-ccceeeccccCC--HHHHHHHHHHHHHHHHHcCc
Confidence 5543332 455 888999999884 45566677777777665543
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.77 E-value=4.8e-05 Score=75.07 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCccc------hHHHHHHhcccC---CEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 343 NYHVVVLDSPGHKD------FVPNMISGATQS---DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 343 ~~~i~liDTPGh~~------f~~~~~~~~~~a---D~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
...+.++|+||+.+ .+++.++.+.+- =++++++|+. |-....++-.-....+.....+.+| -|-|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsq---f~vD~~KfiSG~lsAlsAMi~lE~P-~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQ---FLVDSTKFISGCLSALSAMISLEVP-HINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccc---hhhhHHHHHHHHHHHHHHHHHhcCc-chhhhh
Confidence 34688999999654 467777776662 3677777764 2222222223334445555667899 588999
Q ss_pred cccccc
Q 005973 414 KMDAVQ 419 (666)
Q Consensus 414 K~Dlv~ 419 (666)
|||+++
T Consensus 173 KMDLlk 178 (273)
T KOG1534|consen 173 KMDLLK 178 (273)
T ss_pred HHHHhh
Confidence 999985
No 399
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.71 E-value=0.00016 Score=63.33 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=54.9
Q ss_pred eeEEeEeecC--CCeEEEEEEEEeeeEeeCcEEEEcC---------CCceEEEeeeeec----CcccceeccCCceeEEe
Q 005973 497 MPICDVLKSQ--HGQVSACGKLEAGALRSGLKVLVLP---------SGEVGTVHSIERD----SQSCSVARAGDNIAVSL 561 (666)
Q Consensus 497 ~~I~~v~~~~--~G~v~v~G~V~sG~Lk~Gd~v~v~P---------~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L 561 (666)
+.|+++...+ .|.+ +++||++|+|+.|+.|.+.. .....+|..|... ..++++|.|||+|+|.
T Consensus 3 ~~v~Ki~~~~~~~g~l-a~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~- 80 (93)
T cd03700 3 MYVTKMVPTPDKGGFI-AFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV- 80 (93)
T ss_pred EEEEeCeECCCCCEEE-EEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE-
Confidence 4566666666 5666 89999999999999998765 2234667777543 4688999999999887
Q ss_pred eccCcCccccccEEe
Q 005973 562 QGIDVSRVMSGGVLC 576 (666)
Q Consensus 562 ~gid~~~i~~G~VL~ 576 (666)
|+ .++..|++.+
T Consensus 81 -g~--~~~~~g~~~~ 92 (93)
T cd03700 81 -GL--DQLKSGTTAT 92 (93)
T ss_pred -CC--ccCceEeEec
Confidence 65 3466777653
No 400
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.70 E-value=9.3e-05 Score=77.88 Aligned_cols=84 Identities=24% Similarity=0.213 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..++++|+|-+|+|||||+|+|+..... -++| +-.||++....++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-----------------~~Nf--------------PF~TIdPn~a~V~v~d~ 67 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-----------------AANF--------------PFCTIDPNEARVEVPDS 67 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-----------------ccCC--------------CcceeccccceeecCch
Confidence 5789999999999999999999953221 1122 334555444433221
Q ss_pred ---------------CeEEEEEeCCCcc-------chHHHHHHhcccCCEEEEEEeCCC
Q 005973 343 ---------------NYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 343 ---------------~~~i~liDTPGh~-------~f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
...++++|++|.. -+....++.++.+|+++.||++..
T Consensus 68 Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2458899999943 366777888899999999999864
No 401
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.68 E-value=0.00018 Score=72.18 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCccc------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 KNYHVVVLDSPGHKD------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~~~~i~liDTPGh~~------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
....+.|+|+||+.+ -....++.+...|+-+.+|.-.+..+..+=..+..-..-.+.-+..+..|| |-|+.|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melph-VNvlSK~ 173 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPH-VNVLSKA 173 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccc-hhhhhHh
Confidence 346789999999554 355566666666654444433222222111111112222233334467885 7889999
Q ss_pred cccc
Q 005973 416 DAVQ 419 (666)
Q Consensus 416 Dlv~ 419 (666)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9874
No 402
>PRK12289 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00016 Score=78.47 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=54.4
Q ss_pred hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCC
Q 005973 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (666)
Q Consensus 364 ~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~ 443 (666)
.+..+|.+++|+|+..+.+. ..+....+..+...++| +|+|+||+|++. .+..+ .+...+..+++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~------~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~----~~~~~~~~~g~-- 150 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD------PWQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQ----QWQDRLQQWGY-- 150 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHH----HHHHHHHhcCC--
Confidence 36789999999999865321 11334455555667888 899999999974 22222 22333344454
Q ss_pred CCCcEEEeecccCCCccc
Q 005973 444 ASLTWIPLSALENQNLVT 461 (666)
Q Consensus 444 ~~i~iIpvSA~tG~nI~e 461 (666)
+++++||++|.|+.+
T Consensus 151 ---~v~~iSA~tg~GI~e 165 (352)
T PRK12289 151 ---QPLFISVETGIGLEA 165 (352)
T ss_pred ---eEEEEEcCCCCCHHH
Confidence 579999999999966
No 403
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.66 E-value=9.7e-05 Score=78.10 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCCcc-chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHH
Q 005973 351 SPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (666)
Q Consensus 351 TPGh~-~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~ 429 (666)
=|||. +-.+.+...+..+|++|+|+|+..+.. ....+...++. +.| +|+|+||+|+.+ ....+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~--------~~~~~l~~~~~--~kp-~iiVlNK~DL~~--~~~~~--- 70 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS--------SENPMIDKIIG--NKP-RLLILNKSDLAD--PEVTK--- 70 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC--------CCChhHHHHhC--CCC-EEEEEEchhcCC--HHHHH---
Confidence 48874 456777788899999999999987531 12222222222 556 899999999973 22222
Q ss_pred HHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 430 ~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+..+++..+ .+++++||+++.|+.+
T Consensus 71 -~~~~~~~~~~-----~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 71 -KWIEYFEEQG-----IKALAINAKKGQGVKK 96 (287)
T ss_pred -HHHHHHHHcC-----CeEEEEECCCcccHHH
Confidence 2222222222 3579999999999855
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.64 E-value=0.0003 Score=66.99 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCC
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS 378 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~ 378 (666)
.++.++||||||... .....+..||.+|+|+...
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPG 123 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence 467899999999643 3345678899999998766
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00016 Score=78.74 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=42.4
Q ss_pred CeEEEEEeCCCccc----hHHHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 343 NYHVVVLDSPGHKD----FVPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 343 ~~~i~liDTPGh~~----f~~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
++.++||||||... .+..+...+ ...+.++||+||+.+ .....+.+.....+++. =+++||+|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---------~~d~~~i~~~F~~~~id--glI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---------hHHHHHHHHHhcCCCCC--EEEEEccc
Confidence 46899999999533 233333322 347889999999754 12335555555556666 35699999
Q ss_pred ccc
Q 005973 417 AVQ 419 (666)
Q Consensus 417 lv~ 419 (666)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 763
No 406
>PRK00098 GTPase RsgA; Reviewed
Probab=97.63 E-value=0.00018 Score=76.58 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=53.6
Q ss_pred cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCC
Q 005973 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (666)
Q Consensus 365 ~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~ 444 (666)
+..+|.+|+|+|+..+.+. .....+.+..+...++| +|+|+||+|+... .+.. .++...++.++
T Consensus 78 aaniD~vllV~d~~~p~~~------~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~~----~~~~~~~~~~g---- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS------TDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEEA----RELLALYRAIG---- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHHH----HHHHHHHHHCC----
Confidence 6889999999999765321 12233445556677888 8999999999631 1221 12223333344
Q ss_pred CCcEEEeecccCCCccc
Q 005973 445 SLTWIPLSALENQNLVT 461 (666)
Q Consensus 445 ~i~iIpvSA~tG~nI~e 461 (666)
++++++||++|.|+.+
T Consensus 142 -~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 142 -YDVLELSAKEGEGLDE 157 (298)
T ss_pred -CeEEEEeCCCCccHHH
Confidence 4689999999999965
No 407
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.62 E-value=0.00034 Score=61.33 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=50.2
Q ss_pred eeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC---------ceEEEeeeeec----CcccceeccCCceeEEe
Q 005973 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---------EVGTVHSIERD----SQSCSVARAGDNIAVSL 561 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~---------~~~~VksI~~~----~~~v~~A~aGd~V~l~L 561 (666)
.+.|+++...+ .|...++|||.+|+|+.||.|++...+ ...+|..|... ..++++|.|||+|++.
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~- 80 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK- 80 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE-
Confidence 45677777777 534338999999999999999874211 23566677643 4689999999999887
Q ss_pred eccC
Q 005973 562 QGID 565 (666)
Q Consensus 562 ~gid 565 (666)
|++
T Consensus 81 -gl~ 83 (94)
T cd04090 81 -GID 83 (94)
T ss_pred -Ccc
Confidence 764
No 408
>PRK13796 GTPase YqeH; Provisional
Probab=97.61 E-value=8.3e-05 Score=81.29 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.++.|+|.+|+|||||+|+|+...... .+.....+.+|+|.+.....+.. ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~-------------------------~~~~~~s~~pGTT~~~~~~~l~~---~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE-------------------------KDVITTSRFPGTTLDKIEIPLDD---GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc-------------------------cceEEecCCCCccceeEEEEcCC---Cc
Confidence 369999999999999999999532100 01112345689999876655532 25
Q ss_pred EEEeCCCcc
Q 005973 347 VVLDSPGHK 355 (666)
Q Consensus 347 ~liDTPGh~ 355 (666)
.|+||||..
T Consensus 213 ~l~DTPGi~ 221 (365)
T PRK13796 213 FLYDTPGII 221 (365)
T ss_pred EEEECCCcc
Confidence 799999963
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.60 E-value=0.0004 Score=77.41 Aligned_cols=63 Identities=25% Similarity=0.549 Sum_probs=38.7
Q ss_pred eEEEEEeCCCccchHHHH------HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEeccc
Q 005973 344 YHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKMD 416 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~------~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVViNK~D 416 (666)
+.++||||||....-..+ +..+..+|.++||+|+..+ ....+.+... ..+++. -+|+||+|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g----------q~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG----------QQAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc----------HHHHHHHHHHHhcCCCC--EEEEeccc
Confidence 479999999965443222 2334568999999999865 1222222222 223333 56789999
Q ss_pred cc
Q 005973 417 AV 418 (666)
Q Consensus 417 lv 418 (666)
..
T Consensus 244 ~~ 245 (437)
T PRK00771 244 GT 245 (437)
T ss_pred CC
Confidence 65
No 410
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00033 Score=76.41 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.-.++|+|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 411
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.55 E-value=0.00013 Score=79.73 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.+|.++|.+|+|||||+|+|+....... +.......+|+|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEEe---CCCC
Confidence 4799999999999999999995422100 01122345788887665443 2246
Q ss_pred EEEeCCCccchH--HHHH-----Hh---cccCCEEEEEEeCCCCcccccc
Q 005973 347 VVLDSPGHKDFV--PNMI-----SG---ATQSDAAILVIDASVGSFEVGM 386 (666)
Q Consensus 347 ~liDTPGh~~f~--~~~~-----~~---~~~aD~aIlVVDa~~g~~e~~~ 386 (666)
.|+||||....- ..++ .. -.......+.++..+..+..++
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl 256 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGL 256 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceE
Confidence 799999954321 1111 11 1225566777776665444333
No 412
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.54 E-value=3.3e-05 Score=51.16 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.5
Q ss_pred cceeecccccCCCCCcccccccCCC
Q 005973 49 RVWSCAICTYDNEEGMSVCDICGVL 73 (666)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~ 73 (666)
|.|.|+.|++.|......|++|+++
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 5699999999999999999999985
No 413
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.53 E-value=0.00057 Score=66.64 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=49.7
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
..+.++|+|||+... ......+..+|.+|+|+...... .......+.+++..+++ +.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~--------~~~~~~~~~~l~~~~~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSG--------LHDLERAVELVRHFGIP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCccc--------HHHHHHHHHHHHHcCCC-EEEEEeCCCCC
Confidence 568899999997532 24455668899999999987542 23556667777888888 78999999964
No 414
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.52 E-value=0.00017 Score=68.78 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
..+++++|.+|+|||||+++|.+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999984
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00019 Score=79.44 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=41.8
Q ss_pred cCCeEEEEEeCCCccchHHH---HHH---hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 341 SKNYHVVVLDSPGHKDFVPN---MIS---GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~---~~~---~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
..+..+.||||+|....... .+. ......-.+||+||+.+ .....+.+.....+++. =+++||
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~--~~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIH--GCIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCC--EEEEEe
Confidence 35678999999995443221 112 22335578899999864 12334444444556665 356999
Q ss_pred ccccc
Q 005973 415 MDAVQ 419 (666)
Q Consensus 415 ~Dlv~ 419 (666)
+|...
T Consensus 336 lDEt~ 340 (420)
T PRK14721 336 VDEAA 340 (420)
T ss_pred eeCCC
Confidence 99763
No 416
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.51 E-value=7.1e-05 Score=73.39 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCccchHHH-----HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 343 NYHVVVLDSPGHKDFVPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~-----~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
....+||.+.|..+-... .+......+.+|.|||+..-. ........+..++..-. ++++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~---------~~~~~~~~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFD---------ELENIPELLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHG---------GHTTHCHHHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccccc---------ccccchhhhhhcchhcC-EEEEecccc
Confidence 346788999995443222 223345578999999997521 11111112233344443 778999999
Q ss_pred ccc
Q 005973 418 VQY 420 (666)
Q Consensus 418 v~~ 420 (666)
++.
T Consensus 154 ~~~ 156 (178)
T PF02492_consen 154 VSD 156 (178)
T ss_dssp HHH
T ss_pred CCh
Confidence 963
No 417
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.50 E-value=0.00016 Score=76.43 Aligned_cols=65 Identities=28% Similarity=0.322 Sum_probs=40.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
..++++|++|+|||||+|.|++......... .....+.+++|.......+... .
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v-----------------------~~~~~~g~~tT~~~~~~~~~~~---~ 215 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEI-----------------------SEKLGRGRHTTTHRELFPLPGG---G 215 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccce-----------------------eccCCCCCcccceEEEEEcCCC---C
Confidence 4699999999999999999995422110000 0011233456666655555332 3
Q ss_pred EEEeCCCccch
Q 005973 347 VVLDSPGHKDF 357 (666)
Q Consensus 347 ~liDTPGh~~f 357 (666)
.|+||||..+|
T Consensus 216 ~liDtPG~~~~ 226 (287)
T cd01854 216 LLIDTPGFREF 226 (287)
T ss_pred EEEECCCCCcc
Confidence 68999998665
No 418
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.48 E-value=0.0011 Score=71.13 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=50.5
Q ss_pred eEEEEEeCCCccchHHHH--------HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 344 YHVVVLDSPGHKDFVPNM--------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~--------~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
...++|.|-|..+=.+.. +......|.+|-||||.+.. .......-....++..-. +|++||.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~--------~~~~~~~~~~~~Qia~AD-~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFL--------EGLDAIAELAEDQLAFAD-VIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhh--------hhHHHHHHHHHHHHHhCc-EEEEecc
Confidence 568899999965532222 22334478899999998641 111100111122222222 7899999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeec
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA 453 (666)
|+++. +.++.+.+.+.+ ++ +..+++.++.
T Consensus 156 Dlv~~--~~l~~l~~~l~~----ln---p~A~i~~~~~ 184 (323)
T COG0523 156 DLVDA--EELEALEARLRK----LN---PRARIIETSY 184 (323)
T ss_pred cCCCH--HHHHHHHHHHHH----hC---CCCeEEEccc
Confidence 99963 334444444433 33 3456777665
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.00069 Score=68.40 Aligned_cols=65 Identities=29% Similarity=0.485 Sum_probs=49.3
Q ss_pred CeEEEEEeC-CCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDS-PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDT-PGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.+.++++|| +|.+.|.+-+. ..+|++|.|+|.+... ....+..-.+...+|++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~s--------l~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKS--------LRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHH--------HHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 377999998 56655654443 5699999999988642 23456667888999988899999999964
No 420
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.46 E-value=0.00037 Score=76.08 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=59.2
Q ss_pred ccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHh
Q 005973 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (666)
Q Consensus 354 h~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~ 433 (666)
.++|...+......++++++|+|+.+.. .....+....+. +.| +++|+||+|+.... ...+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~~--~~p-iilV~NK~DLl~k~-~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFVG--GNP-VLLVGNKIDLLPKS-VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHhC--CCC-EEEEEEchhhCCCC-CCHHHHHHHHH
Confidence 4567766555567899999999986531 111122222211 445 99999999997532 12233444455
Q ss_pred hhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 434 TFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 434 ~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
.+++..++.. ..++++||++|.|+.++
T Consensus 118 ~~~k~~g~~~--~~i~~vSAk~g~gv~eL 144 (360)
T TIGR03597 118 KRAKELGLKP--VDIILVSAKKGNGIDEL 144 (360)
T ss_pred HHHHHcCCCc--CcEEEecCCCCCCHHHH
Confidence 5566666531 24799999999999773
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0012 Score=74.39 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=58.8
Q ss_pred cCCeEEEEEeCCCccchHH---HHHHh---cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 341 SKNYHVVVLDSPGHKDFVP---NMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~---~~~~~---~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
..++.+.||||+|...... ..+.. .....-.+||+|+..+ .....+.+......++. -+++||
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~---------~~~l~~i~~~f~~~~~~--g~IlTK 400 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH---------GDTLNEVVQAYRGPGLA--GCILTK 400 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc---------HHHHHHHHHHhccCCCC--EEEEeC
Confidence 3456799999999432221 11111 1113347899999865 12333444444555554 456899
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCc-ccCCCCccccccCCcccHHHHhhhc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL-VTAPDDGRLLSWYKGPCLLDAIDSL 484 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI-~e~~~~~~~~~Wy~g~~LL~~L~~l 484 (666)
+|... ++- .+-.++...+ +|+..++ +|++| ++ ..+++...|++.|...
T Consensus 401 lDet~----~~G----~~l~i~~~~~-----lPI~yvt--~GQ~VPeD-------L~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 401 LDEAA----SLG----GALDVVIRYK-----LPLHYVS--NGQRVPED-------LHLANKKFLLHRAFCA 449 (484)
T ss_pred CCCcc----cch----HHHHHHHHHC-----CCeEEEe--cCCCChhh-------hccCCHHHHHHHHhcC
Confidence 99753 111 1222222223 3444444 78888 43 3344455677776543
No 422
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00095 Score=75.37 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.-.|+|+|.+|+|||||+..|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0011 Score=73.16 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHhcc-----cCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 342 KNYHVVVLDSPGHKD----FVPNMISGAT-----QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 342 ~~~~i~liDTPGh~~----f~~~~~~~~~-----~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
.++.++||||||... .+..+...+. ...-.+||+||+.+ ..+..+.+.....+++. =+++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---------~~~~~~~~~~f~~~~~~--glIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---------YHHTLTVLKAYESLNYR--RILL 366 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---------HHHHHHHHHHhcCCCCC--EEEE
Confidence 467899999999642 2222222221 23468899999876 23455555555667776 3569
Q ss_pred eccccc
Q 005973 413 NKMDAV 418 (666)
Q Consensus 413 NK~Dlv 418 (666)
||+|-.
T Consensus 367 TKLDEt 372 (432)
T PRK12724 367 TKLDEA 372 (432)
T ss_pred EcccCC
Confidence 999976
No 424
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.31 E-value=0.0018 Score=69.49 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+.+..+|.|.-|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3567889999999999999999954
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.00031 Score=76.29 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
....|+|+|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 426
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.29 E-value=0.00094 Score=70.65 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=52.1
Q ss_pred cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCC
Q 005973 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (666)
Q Consensus 365 ~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~ 444 (666)
+..+|.+|+|+|+..+.+. + ......+..+...++| +|+|+||+|+.+. ... . .........+
T Consensus 76 ~anvD~vllV~d~~~p~~s-----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~--~~~---~-~~~~~~~~~g---- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN-----P-RLLDRYLVAAEAAGIE-PVIVLTKADLLDD--EEE---E-LELVEALALG---- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC-----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh--HHH---H-HHHHHHHhCC----
Confidence 6779999999999876311 1 2333455566677888 8999999999742 111 1 1111122233
Q ss_pred CCcEEEeecccCCCccc
Q 005973 445 SLTWIPLSALENQNLVT 461 (666)
Q Consensus 445 ~i~iIpvSA~tG~nI~e 461 (666)
.+++++||++|.|+.+
T Consensus 139 -~~v~~vSA~~g~gi~~ 154 (287)
T cd01854 139 -YPVLAVSAKTGEGLDE 154 (287)
T ss_pred -CeEEEEECCCCccHHH
Confidence 4789999999999965
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.27 E-value=0.0015 Score=71.25 Aligned_cols=128 Identities=23% Similarity=0.293 Sum_probs=71.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc---------cchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR---------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV 336 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~---------i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~ 336 (666)
...|+++|++|+||||.+-.|...... |+.+. |.-.|.+.-+ .|+..| |+.+.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt---YRIGA~EQLk---~Ya~im---------~vp~~vv~ 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT---YRIGAVEQLK---TYADIM---------GVPLEVVY 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc---chhhHHHHHH---HHHHHh---------CCceEEec
Confidence 678999999999999999988765431 11111 0000000000 111111 22222221
Q ss_pred EE--E-----ecCCeEEEEEeCCCccchH----HHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc
Q 005973 337 AY--F-----DSKNYHVVVLDSPGHKDFV----PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF 403 (666)
Q Consensus 337 ~~--~-----~~~~~~i~liDTPGh~~f~----~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l 403 (666)
-. | ....+.++||||.|+..+- ..+...+ ....-.-||++|+.. ....++.+.....+
T Consensus 268 ~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---------~~dlkei~~~f~~~ 338 (407)
T COG1419 268 SPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---------YEDLKEIIKQFSLF 338 (407)
T ss_pred CHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---------hHHHHHHHHHhccC
Confidence 11 0 1245789999999965432 2232222 224567788888764 24556667777777
Q ss_pred CCCcEEEEEecccccc
Q 005973 404 GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 404 gip~iIVViNK~Dlv~ 419 (666)
++.. +++||+|...
T Consensus 339 ~i~~--~I~TKlDET~ 352 (407)
T COG1419 339 PIDG--LIFTKLDETT 352 (407)
T ss_pred Ccce--eEEEcccccC
Confidence 7774 4589999764
No 428
>PRK00098 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00044 Score=73.56 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..++++|++|+|||||+|+|++.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999954
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.00056 Score=71.60 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=42.3
Q ss_pred CeEEEEEeCCCccc----hHHHHHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 343 NYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 343 ~~~i~liDTPGh~~----f~~~~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
++.++||||||... .+..+... ....+..+||+||+.. ..+..+.+.....+++. =+++||+|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---------~~d~~~~~~~f~~~~~~--~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---------HHHHHHHHHHhCCCCCC--EEEEEeec
Confidence 56899999999543 23333322 2347789999999753 12444444444555665 45799999
Q ss_pred ccc
Q 005973 417 AVQ 419 (666)
Q Consensus 417 lv~ 419 (666)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 864
No 430
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.24 E-value=0.00028 Score=77.94 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=46.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..+.|++||++|+||||+||+|.+.+.. .....+|.|-++-...+..
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkV------------------------------sVS~TPGkTKHFQTi~ls~--- 359 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKV------------------------------SVSSTPGKTKHFQTIFLSP--- 359 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCcee------------------------------eeecCCCCcceeEEEEcCC---
Confidence 3789999999999999999999965432 2233477787777666554
Q ss_pred EEEEEeCCC--ccchHH
Q 005973 345 HVVVLDSPG--HKDFVP 359 (666)
Q Consensus 345 ~i~liDTPG--h~~f~~ 359 (666)
.+.|.|+|| +..|..
T Consensus 360 ~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 360 SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred CceecCCCCccccCCCc
Confidence 588999999 444544
No 431
>PRK10867 signal recognition particle protein; Provisional
Probab=97.24 E-value=0.0011 Score=73.69 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.+..|.++|.+|+||||++..|..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999998888764
No 432
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0037 Score=73.66 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..|+|+|+.|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 46899999999999999999854
No 433
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.22 E-value=0.003 Score=73.16 Aligned_cols=176 Identities=18% Similarity=0.280 Sum_probs=121.9
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-ccccccccchhhhH
Q 005973 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFDS 427 (666)
Q Consensus 349 iDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN-K~Dlv~~~~e~~~~ 427 (666)
-|+-|..+-+...+..+..-+.-+=|+.+.-| +.+...+.++...+. +|+.+| |.+.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG----------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~---------- 449 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG----------GITETDISLASASNA--IIIGFNVRPDA---------- 449 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecC----------CCchhhHHHHHhcCC--EEEEEecCCCH----------
Confidence 68999888888888888777888888887755 355566666666653 677776 3332
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh----hhcCCCCCCCCCCceeeEEeEe
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPICDVL 503 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L----~~l~~~~~~~~~p~~~~I~~v~ 503 (666)
......++.+ +.++.- ++. ..|++.+ ..+.++......--...|..+|
T Consensus 450 ---~~~~~a~~~~-----v~i~~~------~iI--------------Y~l~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf 501 (587)
T TIGR00487 450 ---TAKNVAEAEN-----VDIRYY------SVI--------------YKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVF 501 (587)
T ss_pred ---HHHHHHHHcC-----CeEEEe------ChH--------------HHHHHHHHHHHHhccCcceeeEeeeeEEEEEEE
Confidence 1122222223 233221 221 2255544 3333343222222345677899
Q ss_pred ecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEec
Q 005973 504 KSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (666)
Q Consensus 504 ~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~ 577 (666)
+.+ .|.+ +..+|..|+|++|..+.+.+.+. ..+|.||+++..++.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 502 ~~~~~~~i-aG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 502 NVPKIGNI-AGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred ecCCCCEE-EEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 887 7888 89999999999999999998776 467999999999999999999999999876 78899999854
No 434
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.21 E-value=0.0026 Score=69.00 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.+..+|.|..|||||||+++|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 456889999999999999999964
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.0015 Score=70.86 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=51.6
Q ss_pred cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCC
Q 005973 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (666)
Q Consensus 365 ~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~ 444 (666)
+..+|.+++|.+.... +. + ......+..+...++| +|+|+||+|+.+.. ....+ .++...+..++
T Consensus 118 aANvD~vlIV~s~~p~-~s--~----~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~--~~~~~-~~~~~~y~~~g---- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LS--L----NIIDRYLVACETLGIE-PLIVLNKIDLLDDE--GRAFV-NEQLDIYRNIG---- 182 (347)
T ss_pred EEEccEEEEEEeCCCC-CC--H----HHHHHHHHHHHhcCCC-EEEEEECccCCCcH--HHHHH-HHHHHHHHhCC----
Confidence 5779999999887532 21 1 2333345566777888 78999999997431 11112 22222333334
Q ss_pred CCcEEEeecccCCCccc
Q 005973 445 SLTWIPLSALENQNLVT 461 (666)
Q Consensus 445 ~i~iIpvSA~tG~nI~e 461 (666)
++++++||++|+|+.+
T Consensus 183 -~~v~~vSA~tg~Gide 198 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEE 198 (347)
T ss_pred -CeEEEEeCCCCcCHHH
Confidence 4789999999999965
No 436
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.20 E-value=0.012 Score=64.38 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
.+=|+++|++-+|||||+.|+.....
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhc
Confidence 46699999999999999999986543
No 437
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.18 E-value=0.00058 Score=71.44 Aligned_cols=64 Identities=28% Similarity=0.325 Sum_probs=45.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
...+|-|+|-+|+|||||+|++........ .......++|+|+.+.....-....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-------------------------k~a~vG~~pGVT~~V~~~iri~~rp 196 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKK-------------------------KAARVGAEPGVTRRVSERIRISHRP 196 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhc-------------------------cceeccCCCCceeeehhheEeccCC
Confidence 568899999999999999999975432221 0112234589999887754434555
Q ss_pred EEEEEeCCC
Q 005973 345 HVVVLDSPG 353 (666)
Q Consensus 345 ~i~liDTPG 353 (666)
.+.++||||
T Consensus 197 ~vy~iDTPG 205 (335)
T KOG2485|consen 197 PVYLIDTPG 205 (335)
T ss_pred ceEEecCCC
Confidence 688999999
No 438
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.18 E-value=0.0012 Score=73.32 Aligned_cols=65 Identities=25% Similarity=0.445 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCccch----HHHH--HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDF----VPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f----~~~~--~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVViNK 414 (666)
.++.++|+||||.... +..+ +.....+|.++||+|+..+ ....+.+... ..+++. =+++||
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg----------q~~~~~a~~f~~~v~i~--giIlTK 248 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG----------QDAVNTAKTFNERLGLT--GVVLTK 248 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch----------HHHHHHHHHHHhhCCCC--EEEEeC
Confidence 4567999999995322 2222 1223458899999999754 1223333222 345554 456999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
+|..
T Consensus 249 lD~~ 252 (428)
T TIGR00959 249 LDGD 252 (428)
T ss_pred ccCc
Confidence 9954
No 439
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0014 Score=72.12 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCccch----HHHHHHhccc--CC-EEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDF----VPNMISGATQ--SD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f----~~~~~~~~~~--aD-~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
.++.++||||||.... +..+...+.. .+ -.+||+||+.+. ....+.+.....+++. =+++||
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~---------~~~~~~~~~~~~~~~~--~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT---------SDVKEIFHQFSPFSYK--TVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH---------HHHHHHHHHhcCCCCC--EEEEEe
Confidence 5678999999994331 2222222221 23 689999998762 2334444444445665 456999
Q ss_pred ccccc
Q 005973 415 MDAVQ 419 (666)
Q Consensus 415 ~Dlv~ 419 (666)
.|...
T Consensus 322 lDet~ 326 (388)
T PRK12723 322 LDETT 326 (388)
T ss_pred ccCCC
Confidence 99763
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.0017 Score=70.76 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=53.8
Q ss_pred cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCC
Q 005973 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (666)
Q Consensus 365 ~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~ 444 (666)
+..+|.+++|+++..+ +. .......+..+...|++ .|+|+||+|+++. . +...+.+..+ . .
T Consensus 110 aANvD~vliV~s~~p~-~~------~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~-~---~~~~~~~~~~--~-----~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FN------LRRIERYLALAWESGAE-PVIVLTKADLCED-A---EEKIAEVEAL--A-----P 170 (356)
T ss_pred EEeCCEEEEEEecCCC-CC------hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC-H---HHHHHHHHHh--C-----C
Confidence 5779999999999643 21 12556677778889998 6889999999842 1 1122233222 1 2
Q ss_pred CCcEEEeecccCCCccc
Q 005973 445 SLTWIPLSALENQNLVT 461 (666)
Q Consensus 445 ~i~iIpvSA~tG~nI~e 461 (666)
..+++++|+++|.|+.+
T Consensus 171 g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 171 GVPVLAVSALDGEGLDV 187 (356)
T ss_pred CCcEEEEECCCCccHHH
Confidence 35789999999999865
No 441
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0028 Score=70.71 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCccch-------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f-------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
.++.++||||||.... +..++.......-++||++++.+ .....+.+.....+++. =+++||
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---------~~~l~~~~~~f~~~~~~--~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---------YEDLKDIYKHFSRLPLD--GLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---------HHHHHHHHHHhCCCCCC--EEEEec
Confidence 3578999999996432 22222212234577899999765 12444444555555554 467999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
+|..
T Consensus 367 lDet 370 (424)
T PRK05703 367 LDET 370 (424)
T ss_pred cccc
Confidence 9975
No 442
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.11 E-value=0.0062 Score=72.58 Aligned_cols=176 Identities=19% Similarity=0.306 Sum_probs=121.5
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-ccccccccchhhhH
Q 005973 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFDS 427 (666)
Q Consensus 349 iDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN-K~Dlv~~~~e~~~~ 427 (666)
-|+-|..+-+...+..+..-++-+=|+.+.-| ..+...+.++...+. +|+.+| +.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG----------~it~~Dv~la~~~~a--~ii~Fnv~~~~---------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG----------AITESDVTLAAASNA--IIIGFNVRPDA---------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccC----------CCCHHHHHHHHhcCC--EEEEEcCCCCH----------
Confidence 68889888888888888887888888887765 345555556665543 677776 3332
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh----hhcCCCCCCCCCCceeeEEeEe
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPICDVL 503 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L----~~l~~~~~~~~~p~~~~I~~v~ 503 (666)
.+....+..+ +.+... +|. ..|++.+ ..+..|.....---...|.++|
T Consensus 652 ---~~~~~a~~~~-----v~i~~~------~iI--------------Y~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~vF 703 (787)
T PRK05306 652 ---KARKLAEQEG-----VDIRYY------SII--------------YDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVF 703 (787)
T ss_pred ---HHHHHHHHcC-----CEEEEe------ChH--------------HHHHHHHHHHHhhccCchhheeeeeeEEEEEEE
Confidence 1122222222 222221 110 2255544 2333333222222345677999
Q ss_pred ecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEec
Q 005973 504 KSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (666)
Q Consensus 504 ~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~ 577 (666)
+.+ .|.+ +..+|..|.|+.|..+.+...+. ..+|.||+++..++.++..|+-|+|.|.+. .+++.||+|-.
T Consensus 704 ~~~k~~~i-aGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 704 KVSKVGTI-AGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred ecCCCCeE-EEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 988 7988 89999999999999999999876 568999999999999999999999999877 68899999853
No 443
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.10 E-value=0.0063 Score=71.92 Aligned_cols=176 Identities=18% Similarity=0.217 Sum_probs=122.9
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-ccccccccchhhhH
Q 005973 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFDS 427 (666)
Q Consensus 349 iDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN-K~Dlv~~~~e~~~~ 427 (666)
-|+-|..+.+...+..+....+-|=|+.+.-| +.+...+.++...+. +|+.+| +.+.
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG----------~it~~Dv~lA~~~~a--~ii~Fnv~~~~---------- 606 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLG----------EVTETDVEFASTTNA--EILAFNTNLAP---------- 606 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecC----------CCCHHHHHHHHhcCC--EEEEeeCCCCH----------
Confidence 79999888888888888777788888888765 345556666666653 677776 3321
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh----hhcCCCCCCCCCCceeeEEeEe
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPICDVL 503 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L----~~l~~~~~~~~~p~~~~I~~v~ 503 (666)
.+....+..+ +.++.. ++. ..|++.+ ..+..|.......-++.|..+|
T Consensus 607 ---~~~~~a~~~~-----v~i~~~------~iI--------------Y~lid~~~~~~~~~l~~~~~~~~~g~a~v~~vF 658 (742)
T CHL00189 607 ---GAKKAARKLN-----IIIKEY------QVI--------------YDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVF 658 (742)
T ss_pred ---HHHHHHHHcC-----CEEEEe------ChH--------------HHHHHHHHHHHhhccCceeeeeeceeEEeeEEE
Confidence 1112222222 222221 110 2255544 3334443333334466788899
Q ss_pred ecCCCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEec
Q 005973 504 KSQHGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCH 577 (666)
Q Consensus 504 ~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~ 577 (666)
..+.|.+ +..+|..|.|++|..+.++..+. ..+|.||+++..++.++..|+-|+|.|.+. .+++.||+|-.
T Consensus 659 ~~~k~~i-aGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 659 PLAKRFV-AGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred ecCCCEE-EEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 8877877 89999999999999999998886 368999999999999999999999999875 67889999854
No 444
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.08 E-value=0.0053 Score=59.29 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=46.0
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.++|+|||+.... .....+..+|.+|+|++..... ...+...+..+...+.+.+.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS--------LRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch--------HHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999986443 3445678899999999887542 13444555666666776678899999864
No 445
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.07 E-value=0.0037 Score=67.29 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=58.9
Q ss_pred eEEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCC---ccccccccchhHHHHHHHHHHHc---
Q 005973 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEVGMNTAKGLTREHAQLIRSF--- 403 (666)
Q Consensus 330 iTid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g---~~e~~~~~~~~qt~e~l~ll~~l--- 403 (666)
.|.-+....|...+..+-++|.+||..-.+.++..+-.++++|+|++.++- .+|... .-...+-+.+....
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~---~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDET---TNRMHESLKLFESICNN 257 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccc---hhHHHHHHHHHHHHhcC
Confidence 355566677888889999999999988888888888999999999997641 111110 11223333333331
Q ss_pred ----CCCcEEEEEeccccc
Q 005973 404 ----GVDQLIVAVNKMDAV 418 (666)
Q Consensus 404 ----gip~iIVViNK~Dlv 418 (666)
..+ ||+++||.|+.
T Consensus 258 ~~F~~ts-iiLFLNK~DLF 275 (354)
T KOG0082|consen 258 KWFANTS-IILFLNKKDLF 275 (354)
T ss_pred cccccCc-EEEEeecHHHH
Confidence 334 89999999986
No 446
>PRK13796 GTPase YqeH; Provisional
Probab=97.06 E-value=0.0026 Score=69.67 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=54.7
Q ss_pred chHHHHHHhcccCC-EEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhh
Q 005973 356 DFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (666)
Q Consensus 356 ~f~~~~~~~~~~aD-~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~ 434 (666)
+|. .++..+..+| ++++|||+.+.. .....+...+. -+.| +|+|+||+|+.+.. ...+.+.+.+..
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~--~~kp-viLViNK~DLl~~~-~~~~~i~~~l~~ 124 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV--GNNP-VLLVGNKADLLPKS-VKKNKVKNWLRQ 124 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh--CCCC-EEEEEEchhhCCCc-cCHHHHHHHHHH
Confidence 344 4667777666 999999987631 11111111111 1445 89999999997522 122233333444
Q ss_pred hhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 435 FLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 435 ~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
+.+..++.. ..++.+||++|.|+.++
T Consensus 125 ~~k~~g~~~--~~v~~vSAk~g~gI~eL 150 (365)
T PRK13796 125 EAKELGLRP--VDVVLISAQKGHGIDEL 150 (365)
T ss_pred HHHhcCCCc--CcEEEEECCCCCCHHHH
Confidence 455555421 25799999999999763
No 447
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.99 E-value=0.005 Score=55.08 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=43.6
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC---cEEEEEec
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNK 414 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip---~iIVViNK 414 (666)
.++|+|||+.... .....+..+|.+|+|++..... .....+.+..++.++.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPS--------IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHH--------HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999996543 3344667899999999887642 24566667777777754 67888886
No 448
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.97 E-value=0.0037 Score=69.01 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=56.2
Q ss_pred eEEEEEEEEEec-CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCC---ccccccccchhHHHHHHHHHHH---
Q 005973 330 ITMTVAVAYFDS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEVGMNTAKGLTREHAQLIRS--- 402 (666)
Q Consensus 330 iTid~~~~~~~~-~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g---~~e~~~~~~~~qt~e~l~ll~~--- 402 (666)
.|.-+....|.. .+..+.|+|+.|+..-.+.++..+..++++|+||+.+.= .+|.... -...+-+.+...
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~---nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNT---NRLHESLNLFESICN 297 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTS---BHHHHHHHHHHHHHT
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchH---HHHHHHHHHHHHHHh
Confidence 344455667777 899999999999988888888888899999999997631 1111111 123333333332
Q ss_pred ---c-CCCcEEEEEeccccc
Q 005973 403 ---F-GVDQLIVAVNKMDAV 418 (666)
Q Consensus 403 ---l-gip~iIVViNK~Dlv 418 (666)
+ ..+ +||++||+|+.
T Consensus 298 ~~~~~~~~-iil~lnK~D~f 316 (389)
T PF00503_consen 298 NPWFKNTP-IILFLNKIDLF 316 (389)
T ss_dssp SGGGTTSE-EEEEEE-HHHH
T ss_pred CcccccCc-eEEeeecHHHH
Confidence 2 344 99999999986
No 449
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.92 E-value=0.0074 Score=62.86 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..+.+.-+|.|.-|||||||+|.++..
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHcc
Confidence 345666788999999999999999854
No 450
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.0037 Score=68.37 Aligned_cols=136 Identities=22% Similarity=0.375 Sum_probs=70.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCc-------cchhh-----hhhhHHHHhhhCCCcchhhhcccccccccccCe
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR-------ITQKQ-----MHKYEKEAKLQGKGSFAYAWALDESAEERERGI 330 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~-------i~~~~-----~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~Gi 330 (666)
..++..|.++|--|+||||.++.|...+.. +..+. ++.++.-+...+-.-|.- .....+.+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~--~~~~~Pv~I---- 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS--GTEKDPVEI---- 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC--CCCCCHHHH----
Confidence 345678999999999999999998754211 11111 111111111111111100 000000000
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEeCCCCccccccccchhHHHHH--HHHHHH
Q 005973 331 TMTVAVAYFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH--AQLIRS 402 (666)
Q Consensus 331 Tid~~~~~~~~~~~~i~liDTPGh~~----f~~~~--~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~--l~ll~~ 402 (666)
..-+...+....+.++|+||+|... .+..+ +.....+|=+|||+||..| |.... -.+-..
T Consensus 171 -ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G-----------QdA~~~A~aF~e~ 238 (451)
T COG0541 171 -AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG-----------QDAVNTAKAFNEA 238 (451)
T ss_pred -HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc-----------hHHHHHHHHHhhh
Confidence 0001111223457899999999333 33333 3345669999999999876 32221 122334
Q ss_pred cCCCcEEEEEeccccc
Q 005973 403 FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 403 lgip~iIVViNK~Dlv 418 (666)
+++- =|+++|+|--
T Consensus 239 l~it--GvIlTKlDGd 252 (451)
T COG0541 239 LGIT--GVILTKLDGD 252 (451)
T ss_pred cCCc--eEEEEcccCC
Confidence 5554 4679999964
No 451
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0016 Score=65.69 Aligned_cols=152 Identities=21% Similarity=0.246 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|.++|+--+|||++-....+...- .+..-.|....+|.+.. ...-..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP--------------------------neTlflESTski~~d~i----s~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP--------------------------NETLFLESTSKITRDHI----SNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC--------------------------CceeEeeccCcccHhhh----hhhhcce
Confidence 45999999999999998776643111 01111122222332211 1122357
Q ss_pred EEEeCCCccchHHHH---HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCc---EEEEEeccccccc
Q 005973 347 VVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ---LIVAVNKMDAVQY 420 (666)
Q Consensus 347 ~liDTPGh~~f~~~~---~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~---iIVViNK~Dlv~~ 420 (666)
.+||-||+.+|+... ..-++.+-++|+||||-..- ..+.++-|+.+.++..+.+ +=|.+-|.|-...
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-------~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-------MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-------HHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 799999988765443 22356788999999997642 2356666777777776653 6688999997642
Q ss_pred cc--hhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc
Q 005973 421 SK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (666)
Q Consensus 421 ~~--e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t 455 (666)
+. +....+.++...-|...|...-.+.|..+|...
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 21 223445666666677777765556666666544
No 452
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.67 E-value=0.0032 Score=56.57 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 005973 267 LNLAIVGHVDSGKSTLSGRLL 287 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll 287 (666)
++|+++|..++|||+|+.++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred CEEEEECCCChhHHHHHHHHh
Confidence 379999999999999999996
No 453
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.65 E-value=0.0013 Score=70.79 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=42.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
-++.++|+|||.+|+||||+||+|.....- .....+|+|.......+
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C------------------------------~vg~~pGvT~smqeV~L--- 295 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKAC------------------------------NVGNVPGVTRSMQEVKL--- 295 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccc------------------------------cCCCCccchhhhhheec---
Confidence 467899999999999999999999854221 11223577765554443
Q ss_pred CeEEEEEeCCCc
Q 005973 343 NYHVVVLDSPGH 354 (666)
Q Consensus 343 ~~~i~liDTPGh 354 (666)
+..|.|+|.||.
T Consensus 296 dk~i~llDsPgi 307 (435)
T KOG2484|consen 296 DKKIRLLDSPGI 307 (435)
T ss_pred cCCceeccCCce
Confidence 346899999994
No 454
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.60 E-value=0.012 Score=65.43 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccch--hhhhhhHHHHhhhCCCcchhhhccccc-------------------
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQ--KQMHKYEKEAKLQGKGSFAYAWALDES------------------- 322 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~--~~~~k~~k~~~~~g~g~~~~~~~~d~~------------------- 322 (666)
...++|+++|.-.+|||+.+..+........- ..|.... .--....|....+.+.|..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaP-VKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSP-VKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCC-eEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 45688999999999999999988754211000 0000000 0000011222222222211
Q ss_pred ---ccccccCeEEEEEEEEEec--CC-eEEEEEeCCCcc-------------chHHHHHHhcccCCEEEEEEeCCCCccc
Q 005973 323 ---AEERERGITMTVAVAYFDS--KN-YHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGSFE 383 (666)
Q Consensus 323 ---~~e~~~GiTid~~~~~~~~--~~-~~i~liDTPGh~-------------~f~~~~~~~~~~aD~aIlVVDa~~g~~e 383 (666)
...-..|.|+......+.. .+ .+++|+|.||.. ........++..++++||+|--..-..|
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 1112345566554444443 22 568899999932 2345556677889999999732211001
Q ss_pred cccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 384 VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 384 ~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
....-.....+.-+|-. .|+|++|.|+..
T Consensus 465 ------RSnVTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 465 ------RSIVTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred ------hhhHHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 01111222333445655 799999999985
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0056 Score=65.78 Aligned_cols=126 Identities=23% Similarity=0.380 Sum_probs=69.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhC-------ccchhhhhhhHHHHhhhCCCcchhhhcccccccc-cccCeEEEEE
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG-------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVA 335 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~-------~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e-~~~GiTid~~ 335 (666)
.++-.|.++|--|+||||.+..|.+... .+..+++. .. ..|..... ...++.+-..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR---------------ag-AfDQLkqnA~k~~iP~ygs 162 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR---------------AG-AFDQLKQNATKARVPFYGS 162 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc---------------cc-hHHHHHHHhHhhCCeeEec
Confidence 3456789999999999999999976421 12112211 10 11111111 1112222111
Q ss_pred EE-------------EEecCCeEEEEEeCCCccc----hHHHHH--HhcccCCEEEEEEeCCCCccccccccchhHHHHH
Q 005973 336 VA-------------YFDSKNYHVVVLDSPGHKD----FVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (666)
Q Consensus 336 ~~-------------~~~~~~~~i~liDTPGh~~----f~~~~~--~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~ 396 (666)
+. .|..+++.++|+||.|... ++..|+ ..+..+|-+|+|+||+-| |..+.
T Consensus 163 yte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-----------Qaae~ 231 (483)
T KOG0780|consen 163 YTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG-----------QAAEA 231 (483)
T ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc-----------HhHHH
Confidence 11 2344678999999999322 344443 234569999999999876 33222
Q ss_pred H--HHHHHcCCCcEEEEEeccccc
Q 005973 397 A--QLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 397 l--~ll~~lgip~iIVViNK~Dlv 418 (666)
. .+-...++- -+++||+|-.
T Consensus 232 Qa~aFk~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 232 QARAFKETVDVG--AVILTKLDGH 253 (483)
T ss_pred HHHHHHHhhccc--eEEEEecccC
Confidence 1 111223343 4678999964
No 456
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.59 E-value=0.0079 Score=64.60 Aligned_cols=84 Identities=24% Similarity=0.244 Sum_probs=58.0
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCc---cccccccchhHHHHHHHHHHH-----
Q 005973 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS----- 402 (666)
Q Consensus 331 Tid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~---~e~~~~~~~~qt~e~l~ll~~----- 402 (666)
|..+....|...+..+.+||++|+....+.+...+..++++|+|||.++-. .|.... ....+.+.+...
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~---nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDEST---NRMQESLNLFDSICNSR 224 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcc---hHHHHHHHHHHHHHhCc
Confidence 444445567778889999999999999999999999999999999987521 111110 122233322222
Q ss_pred --cCCCcEEEEEeccccc
Q 005973 403 --FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 403 --lgip~iIVViNK~Dlv 418 (666)
.+.| +|+++||.|+.
T Consensus 225 ~~~~~p-ill~~NK~D~f 241 (317)
T cd00066 225 WFANTS-IILFLNKKDLF 241 (317)
T ss_pred cccCCC-EEEEccChHHH
Confidence 2556 99999999976
No 457
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.58 E-value=0.023 Score=53.36 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=43.5
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~Dlv 418 (666)
+.++|+|+|+... ......+..+|.+|+|++.+... ...+...+..+.. .+..++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s--------~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTS--------ITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhH--------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999998543 33455678899999999987532 1233444444433 3344588999999743
No 458
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.58 E-value=0.0096 Score=62.74 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=59.3
Q ss_pred ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCC
Q 005973 366 TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445 (666)
Q Consensus 366 ~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~ 445 (666)
...|-+|+|+.+..+.|.. .+....|-++...|+. .|+|+||+|+.+. +.... +++......++|
T Consensus 78 ~n~d~~iiIvs~~~P~~~~------~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~--~~~~~--~~~~~~y~~~gy---- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNT------NLLDRYLVLAEAGGIE-PVIVLNKIDLLDD--EEAAV--KELLREYEDIGY---- 142 (301)
T ss_pred cccceEEEEEeccCCCCCH------HHHHHHHHHHHHcCCc-EEEEEEccccCcc--hHHHH--HHHHHHHHhCCe----
Confidence 3488899999999886542 4566778888889998 5788999999963 22221 445555556665
Q ss_pred CcEEEeecccCCCccc
Q 005973 446 LTWIPLSALENQNLVT 461 (666)
Q Consensus 446 i~iIpvSA~tG~nI~e 461 (666)
+++.+|+++++|+.+
T Consensus 143 -~v~~~s~~~~~~~~~ 157 (301)
T COG1162 143 -PVLFVSAKNGDGLEE 157 (301)
T ss_pred -eEEEecCcCcccHHH
Confidence 679999999999966
No 459
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.024 Score=60.14 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
....|+++|.-|+|||||++.|...
T Consensus 187 df~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhcc
Confidence 4567999999999999999999854
No 460
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.50 E-value=0.018 Score=50.67 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=56.8
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec-CcccceeccCCceeEEeeccCcCccccccEE
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
.|.+....+ .|.+ ++..|..|+|++||.+..+ ....+||+|... ...+++|.||+.|.|. |++.- -..|+.+
T Consensus 4 ~VlE~~~~~g~G~v-atviV~~GtL~~Gd~iv~G--~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~~~~-P~aGd~~ 77 (95)
T cd03702 4 VVIESKLDKGRGPV-ATVLVQNGTLKVGDVLVAG--TTYGKVRAMFDENGKRVKEAGPSTPVEIL--GLKGV-PQAGDKF 77 (95)
T ss_pred EEEEEEecCCCCcc-EEEEEEcCeEeCCCEEEEc--ccccEEEEEECCCCCCCCEECCCCcEEEc--CCCCC-CCCCCEE
Confidence 345555555 7888 8999999999999999998 445699999976 5899999999999885 65321 1456666
Q ss_pred ec
Q 005973 576 CH 577 (666)
Q Consensus 576 ~~ 577 (666)
..
T Consensus 78 ~~ 79 (95)
T cd03702 78 LV 79 (95)
T ss_pred EE
Confidence 54
No 461
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.45 E-value=0.013 Score=63.71 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=58.4
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCC---ccccccccchhHHHHHHHHHHH----c
Q 005973 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEVGMNTAKGLTREHAQLIRS----F 403 (666)
Q Consensus 331 Tid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g---~~e~~~~~~~~qt~e~l~ll~~----l 403 (666)
|.-+....|...+..+.+||.+|+....+.+...+..++++|+|||.+.- .+|.....-.......+..+.. .
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 44445556777888999999999999999999999999999999998852 1111110111222222222211 2
Q ss_pred CCCcEEEEEeccccc
Q 005973 404 GVDQLIVAVNKMDAV 418 (666)
Q Consensus 404 gip~iIVViNK~Dlv 418 (666)
++| +|+++||.|+.
T Consensus 251 ~~p-iil~~NK~D~~ 264 (342)
T smart00275 251 NTS-IILFLNKIDLF 264 (342)
T ss_pred CCc-EEEEEecHHhH
Confidence 456 99999999986
No 462
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.34 E-value=0.022 Score=48.41 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=46.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEEE
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~l 348 (666)
+++.|..|+||||+...|...... .|... ..++ .+++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 678899999999999999843211 01111 1111 7899
Q ss_pred EeCCCccchHHH-HHHhcccCCEEEEEEeCCCC
Q 005973 349 LDSPGHKDFVPN-MISGATQSDAAILVIDASVG 380 (666)
Q Consensus 349 iDTPGh~~f~~~-~~~~~~~aD~aIlVVDa~~g 380 (666)
+|+|+....... ....+..+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999996544321 24556779999999988754
No 463
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.33 E-value=0.0091 Score=74.80 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.9
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRL 286 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~L 286 (666)
=..|||.+|+|||||+.+-
T Consensus 113 WYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred CEEEECCCCCchhHHHHhC
Confidence 3789999999999999876
No 464
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.015 Score=65.16 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=68.6
Q ss_pred eeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccceeccCCceeEEeeccCcCcccc
Q 005973 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 571 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~ 571 (666)
...+..+|..+ .|.+ +..+|..|.++.|..+.+...+. ..+|.+|+++..++.++.+|+-|+|.+.+ ..+++.
T Consensus 415 ~~~~r~v~~~~k~g~I-aG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~ 491 (509)
T COG0532 415 LAEVRAVFKLPKVGAI-AGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKE 491 (509)
T ss_pred ceEEEEEEEcCCCCeE-EEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCC
Confidence 34567888888 8998 89999999999999999986664 37999999999999999999999999987 578889
Q ss_pred ccEEec
Q 005973 572 GGVLCH 577 (666)
Q Consensus 572 G~VL~~ 577 (666)
||+|-.
T Consensus 492 gD~le~ 497 (509)
T COG0532 492 GDILEV 497 (509)
T ss_pred CCEEEE
Confidence 998853
No 465
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.02 Score=61.01 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
..++..|.|+|=.|+||||-++.|.+..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 3457889999999999999999998753
No 466
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.26 E-value=0.024 Score=63.97 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=82.8
Q ss_pred CcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE
Q 005973 259 KKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY 338 (666)
Q Consensus 259 ~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~ 338 (666)
+++..++.++.-++|.-++|||.|++.+++..- .+..........+++.....
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~---------------------------~~~~~~~~~~~~avn~v~~~ 470 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSM---------------------------SDNNTGTTKPRYAVNSVEVK 470 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhcccc---------------------------ccccccCCCCceeeeeeeec
Confidence 334456778999999999999999999995311 01001111122233332222
Q ss_pred EecCCeEEEEEeCCCc-cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEeccc
Q 005973 339 FDSKNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMD 416 (666)
Q Consensus 339 ~~~~~~~i~liDTPGh-~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~D 416 (666)
...+.++|-|.+-. .++..+- -..+|++++|+|.+.+.. | ....+...+... ..+| +++|..|+|
T Consensus 471 --g~~k~LiL~ei~~~~~~~l~~k---e~~cDv~~~~YDsS~p~s---f----~~~a~v~~~~~~~~~~P-c~~va~K~d 537 (625)
T KOG1707|consen 471 --GQQKYLILREIGEDDQDFLTSK---EAACDVACLVYDSSNPRS---F----EYLAEVYNKYFDLYKIP-CLMVATKAD 537 (625)
T ss_pred --cccceEEEeecCccccccccCc---cceeeeEEEecccCCchH---H----HHHHHHHHHhhhccCCc-eEEEeeccc
Confidence 33445666666543 1122111 167999999999986521 1 222333333322 4566 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t 455 (666)
+-...+ ...-+..++..++++.. -+++|.++
T Consensus 538 lDe~~Q----~~~iqpde~~~~~~i~~----P~~~S~~~ 568 (625)
T KOG1707|consen 538 LDEVPQ----RYSIQPDEFCRQLGLPP----PIHISSKT 568 (625)
T ss_pred cchhhh----ccCCChHHHHHhcCCCC----CeeeccCC
Confidence 864221 11122255666677643 25667664
No 467
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.17 E-value=0.018 Score=63.75 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=25.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i 293 (666)
....+|+|+|+.++|||||+++|....+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 346789999999999999999999876654
No 468
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.15 E-value=0.034 Score=49.01 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=26.4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCC
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g 380 (666)
+.++|+|+|+..... ....+..+|.+|+++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 679999999965332 33566779999999988753
No 469
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.02 Score=59.08 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
--.+||..||.+|-|||||+..|.+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFN 64 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFN 64 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhc
Confidence 4568999999999999999999984
No 470
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.98 E-value=0.052 Score=47.73 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=55.5
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec-CcccceeccCCceeEEeeccCcCccccccEE
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
.|-+.-..+ .|.+ ++..|..|+|++||.+.++ ....+|+++... .+.+..|.|++.|.+. |++. ....|+.+
T Consensus 4 ~ViE~~~~~g~G~v-atviV~~GtL~~Gd~iv~G--~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~--g~~~-~p~aGd~~ 77 (95)
T cd03701 4 TVIESKLDKGRGPV-ATVIVQNGTLKKGDVIVAG--GTYGKIRTMVDENGKALLEAGPSTPVEIL--GLKD-VPKAGDGV 77 (95)
T ss_pred EEEEEEecCCCCee-EEEEEEcCeEecCCEEEEC--CccceEEEEECCCCCCccccCCCCCEEEe--eecC-CccCCCEE
Confidence 344555555 7988 8999999999999999998 556789999875 6789999999998655 5532 23456555
Q ss_pred e
Q 005973 576 C 576 (666)
Q Consensus 576 ~ 576 (666)
.
T Consensus 78 ~ 78 (95)
T cd03701 78 L 78 (95)
T ss_pred E
Confidence 3
No 471
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.77 E-value=0.0037 Score=67.12 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.+..+.|++||++|+|||++||.|-..
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhc
Confidence 457899999999999999999999843
No 472
>PRK13695 putative NTPase; Provisional
Probab=95.71 E-value=0.043 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+|+|+|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 473
>PRK01889 GTPase RsgA; Reviewed
Probab=95.68 E-value=0.012 Score=64.24 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.++|+|.+|+|||||+|.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36999999999999999999964
No 474
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.62 E-value=0.017 Score=56.44 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=28.4
Q ss_pred CEEEEEEeCCCCccccccccchhHHHHHHHH--HHHcCCCcEEEEEecccccc
Q 005973 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 369 D~aIlVVDa~~g~~e~~~~~~~~qt~e~l~l--l~~lgip~iIVViNK~Dlv~ 419 (666)
|++++|+||..+.. ....+...+ +...+.| +|+|+||+|+++
T Consensus 1 DvVl~VvDar~p~~--------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLG--------CRCPQVEEAVLQAGGNKK-LVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCC--------CCCHHHHHHHHhccCCCC-EEEEEehhhcCC
Confidence 78999999987631 222233333 3334566 899999999974
No 475
>CHL00175 minD septum-site determining protein; Validated
Probab=95.57 E-value=0.071 Score=55.94 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=47.0
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.+.++|+|||+... ......+..+|.+|+|++..... .......+.++...+.+.+-+|+|+++..
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~s--------i~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITA--------IRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHH--------HHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 57899999998643 23344556799999999876431 23455666777777776678899999743
No 476
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=95.57 E-value=0.049 Score=63.28 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=61.9
Q ss_pred eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCC-ceEEEeeeeecCcccceeccCCceeEEeeccC-cCccccccEEec
Q 005973 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGID-VSRVMSGGVLCH 577 (666)
Q Consensus 501 ~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid-~~~i~~G~VL~~ 577 (666)
.+|+.+.+.+ +..+|..|.|++|..|. .+.+ ...+|.||+++.+++.+|.+|+-|+|.|.+.. ..+++.||+|..
T Consensus 473 ~vf~~~~~~i-~G~~V~~G~i~~~~~v~-r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSKPAI-VGVEVLTGVIRQGYPLM-KDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCCCeE-EEEEEecCEEecCCeEE-ecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 5777666666 88899999999999874 3333 46789999999999999999999999998753 268899999976
No 477
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.24 E-value=0.057 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+.+.++|+|..|+|||||+.+|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4567999999999999999999943
No 478
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=95.11 E-value=0.17 Score=45.58 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=57.2
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc--eEEEeeeeecCc-----------ccceeccCCceeEEeec
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERDSQ-----------SCSVARAGDNIAVSLQG 563 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~--~~~VksI~~~~~-----------~v~~A~aGd~V~l~L~g 563 (666)
.|-++-..+ .|.+ +.--|..|+|++||.|.++...- ..+||+|...+. .+++|.|..-|-+...|
T Consensus 4 tVlEvk~~~G~G~t-~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 4 TVLEVKEEEGLGTT-IDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEcCCCceE-EEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 355666666 8988 89999999999999999986543 468999987643 78889977777776555
Q ss_pred cCcCccccccEEec
Q 005973 564 IDVSRVMSGGVLCH 577 (666)
Q Consensus 564 id~~~i~~G~VL~~ 577 (666)
+ +.+..|+.+.-
T Consensus 83 L--~~v~aG~~~~v 94 (110)
T cd03703 83 L--EKAIAGSPLLV 94 (110)
T ss_pred C--ccccCCCEEEE
Confidence 5 34466766543
No 479
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=94.89 E-value=0.014 Score=55.97 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=25.8
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
--|.|-|+.|||-|+....-|-||+|...
T Consensus 21 Deg~WdCsvCTFrNsAeAfkC~vCdvRKG 49 (228)
T KOG4477|consen 21 DEGKWDCSVCTFRNSAEAFKCFVCDVRKG 49 (228)
T ss_pred ccCceeeeeeeecchhhhhheeeeccccc
Confidence 44679999999999999999999998753
No 480
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.82 E-value=0.029 Score=50.65 Aligned_cols=25 Identities=44% Similarity=0.425 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|.|.+|||||||.+.|....+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4899999999999999999976543
No 481
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.76 E-value=0.057 Score=58.87 Aligned_cols=29 Identities=41% Similarity=0.296 Sum_probs=24.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
.....+|.|+|++|+|||||...|++...
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHh
Confidence 34567899999999999999999986643
No 482
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.057 Score=59.68 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCc------cchhhhhhhHHHHhhhCCCcc-hhhhcccccccccccCeEEEE
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGR------ITQKQMHKYEKEAKLQGKGSF-AYAWALDESAEERERGITMTV 334 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~------i~~~~~~k~~k~~~~~g~g~~-~~~~~~d~~~~e~~~GiTid~ 334 (666)
..+++..|+|||=.|+||||-+-.+.+.+-. |..- ..+...|.+.-+-+. +++.+.+...+--+.|-.-+.
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAAC--DTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~ 451 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAAC--DTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDA 451 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEec--cchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCCh
Confidence 4458999999999999999999887765311 1000 000011111100000 111111111111111111110
Q ss_pred EE------EEEecCCeEEEEEeCCCccchHHHHHH------hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH
Q 005973 335 AV------AYFDSKNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (666)
Q Consensus 335 ~~------~~~~~~~~~i~liDTPGh~~f~~~~~~------~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~ 402 (666)
+. .+-...++.++|+||+|...--...++ -+..+|.+|+|=.|--|. +. ..|....-..+..
T Consensus 452 a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-----ds-v~q~~~fn~al~~ 525 (587)
T KOG0781|consen 452 AGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-----DS-VDQLKKFNRALAD 525 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-----HH-HHHHHHHHHHHhc
Confidence 00 011125788999999994332222211 245699999996654331 11 2355444444444
Q ss_pred cCCCcE--EEEEecccccc
Q 005973 403 FGVDQL--IVAVNKMDAVQ 419 (666)
Q Consensus 403 lgip~i--IVViNK~Dlv~ 419 (666)
...|+. -++++|+|.++
T Consensus 526 ~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 526 HSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred CCCccccceEEEEeccchh
Confidence 444433 47899999985
No 483
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.72 E-value=0.14 Score=40.59 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=25.7
Q ss_pred HHhc-ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEeccc
Q 005973 362 ISGA-TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMD 416 (666)
Q Consensus 362 ~~~~-~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViNK~D 416 (666)
+.++ ..++++++++|.+... |. .+..|..-.-.+-..+ +.| +++|+||+|
T Consensus 7 i~AL~hL~~~ilfi~D~Se~C---Gy-sie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 7 ITALAHLADAILFIIDPSEQC---GY-SIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHGGGGT-SEEEEEE-TT-TT---SS--HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHhhcceEEEEEcCCCCC---CC-CHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 3444 3488999999998642 22 2333443333333445 566 999999998
No 484
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.048 Score=67.18 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.4
Q ss_pred EEEEeCCCCCHHHHHHHH
Q 005973 269 LAIVGHVDSGKSTLSGRL 286 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~L 286 (666)
-.|||++|+||||++...
T Consensus 128 y~viG~pgsGKTtal~~s 145 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS 145 (1188)
T ss_pred eEEecCCCCCcchHHhcc
Confidence 678999999999998544
No 485
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.29 E-value=0.14 Score=59.68 Aligned_cols=75 Identities=21% Similarity=0.446 Sum_probs=60.4
Q ss_pred eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCc-eEEEeeeeecCcccceeccCCceeEEeeccC-cCccccccEEec
Q 005973 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGE-VGTVHSIERDSQSCSVARAGDNIAVSLQGID-VSRVMSGGVLCH 577 (666)
Q Consensus 501 ~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~-~~~VksI~~~~~~v~~A~aGd~V~l~L~gid-~~~i~~G~VL~~ 577 (666)
.+|+.+.+.+ +..+|..|.|++|..|.- +.+. ..+|.||+++.+++.++.+|+-|+|.|.+.. ..+++.||+|-.
T Consensus 475 ~vf~~~~~~I-aGc~V~~G~i~~~~~v~r-~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAI-VGVEVLGGTIKPGVPLIK-EDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeE-EEEEEEeCEEecCCEEEE-ECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5777666666 888999999999998543 2443 5789999999999999999999999998652 257888998854
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.12 E-value=0.05 Score=43.97 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|.|+.++|||||+.++...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 487
>PRK14845 translation initiation factor IF-2; Provisional
Probab=94.04 E-value=0.14 Score=62.80 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=61.7
Q ss_pred eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCC-ceEEEeeeeecCcccceeccCCceeEEeeccC-cCccccccEEec
Q 005973 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGID-VSRVMSGGVLCH 577 (666)
Q Consensus 501 ~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid-~~~i~~G~VL~~ 577 (666)
.+|+.+.+.+ +..+|..|+|++|..|.- +.+ ...+|.||+++.+++++|.+|+-|+|.+.+.. ..++..||+|..
T Consensus 931 ~vF~~~~~~I-aG~~V~~G~i~~~~~l~r-~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSNPAI-VGVEVLEGTLRVGVTLIK-EDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCCCeE-EEEEEeeCEEecCcEEEe-cCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6787766766 889999999999987753 333 35789999999999999999999999998743 357888999876
No 488
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.03 E-value=0.051 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999943
No 489
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.32 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
...+|+|.|+||+|||||+..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 467899999999999999999974
No 490
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=93.91 E-value=0.16 Score=56.79 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=53.6
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEeccccccccchhhhHHHHHHhh
Q 005973 356 DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (666)
Q Consensus 356 ~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViNK~Dlv~~~~e~~~~i~~el~~ 434 (666)
++.+...+-+..+|++|.+|||.++.|.. .+.... +.... .-++.++++||.|+.. .++ ......
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr-----~~dLe~---Yvke~d~~K~~~LLvNKaDLl~--~~q----r~aWa~ 228 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFR-----SPDLED---YVKEVDPSKANVLLVNKADLLP--PEQ----RVAWAE 228 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccC-----ChhHHH---HHhccccccceEEEEehhhcCC--HHH----HHHHHH
Confidence 45677788889999999999999986542 122222 22222 2244799999999984 232 234445
Q ss_pred hhhhcCcCCCCCcEEEeeccc
Q 005973 435 FLRSCGFKDASLTWIPLSALE 455 (666)
Q Consensus 435 ~l~~~~~~~~~i~iIpvSA~t 455 (666)
++.. .+++++..||+-
T Consensus 229 YF~~-----~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 229 YFRQ-----NNIPVVFFSALA 244 (562)
T ss_pred HHHh-----cCceEEEEeccc
Confidence 5543 347899999987
No 491
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.83 E-value=0.056 Score=50.15 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhC
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
|.++|.+|+|||||+.+|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999996654
No 492
>PRK08233 hypothetical protein; Provisional
Probab=93.77 E-value=0.063 Score=52.03 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
+...|+|.|.+|+|||||..+|....+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346799999999999999999987654
No 493
>KOG2484 consensus GTPase [General function prediction only]
Probab=93.76 E-value=0.12 Score=55.99 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=47.7
Q ss_pred EeCCCc-cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhH
Q 005973 349 LDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 349 iDTPGh-~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
.|-+++ ..|.+....-+..+|++|-|+||.++.... ..+..+. ++.+.|-+++|+|+||+|+++ .+.++.
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR-----~~~vE~~--V~~~~gnKkLILVLNK~DLVP--rEv~e~ 197 (435)
T KOG2484|consen 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTR-----CPEVEEA--VLQAHGNKKLILVLNKIDLVP--REVVEK 197 (435)
T ss_pred ccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCC-----ChhHHHH--HHhccCCceEEEEeehhccCC--HHHHHH
Confidence 344443 347777777888899999999999873211 1233332 233456466999999999995 344444
Q ss_pred HHHHH
Q 005973 428 IKVQL 432 (666)
Q Consensus 428 i~~el 432 (666)
+...|
T Consensus 198 Wl~YL 202 (435)
T KOG2484|consen 198 WLVYL 202 (435)
T ss_pred HHHHH
Confidence 43333
No 494
>PRK08118 topology modulation protein; Reviewed
Probab=93.69 E-value=0.061 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
.+|.|+|.+|+|||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999986644
No 495
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.061 Score=52.90 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|+|++||||||+...|....+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999977554
No 496
>PRK07261 topology modulation protein; Provisional
Probab=93.68 E-value=0.061 Score=52.36 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999744
No 497
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.64 E-value=0.44 Score=49.58 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=39.1
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEecccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVViNK~Dl 417 (666)
.+.++||||||.... ..+...+..||.+|+++........ . ...+.+.+... ...+++...+|+|+++.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~----~-~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIF----A-ANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHH----H-HHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 578999999985321 1123346779999999987643111 0 11222222211 22355534478999984
No 498
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.63 E-value=0.077 Score=53.26 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=24.4
Q ss_pred CcCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 005973 259 KKGDRMTQLNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 259 ~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.-+++....-|+|+|++|+|||||+++|..
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 344455667799999999999999999974
No 499
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.54 E-value=0.075 Score=53.25 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
++...|+|+|++|+|||||+++|.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456799999999999999999987643
No 500
>PRK14530 adenylate kinase; Provisional
Probab=93.53 E-value=0.072 Score=53.71 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.++|+|+|.+||||||+...|....+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999877654
Done!