Query 005973
Match_columns 666
No_of_seqs 421 out of 3868
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 2.2E-68 7.5E-73 590.9 46.5 398 263-666 14-414 (439)
2 3mca_A HBS1, elongation factor 100.0 1.7E-65 5.9E-70 586.2 30.6 393 262-666 173-568 (592)
3 3p26_A Elongation factor 1 alp 100.0 2.4E-64 8.1E-69 565.3 37.4 400 264-666 31-452 (483)
4 1f60_A Elongation factor EEF1A 100.0 6.9E-64 2.4E-68 557.7 37.4 398 264-666 5-416 (458)
5 1jny_A EF-1-alpha, elongation 100.0 4E-63 1.4E-67 548.4 39.2 398 264-666 4-404 (435)
6 3izq_1 HBS1P, elongation facto 100.0 1.1E-63 3.8E-68 572.8 34.6 401 263-666 164-586 (611)
7 1r5b_A Eukaryotic peptide chai 100.0 1.1E-63 3.8E-68 557.3 26.6 397 264-666 41-442 (467)
8 1zun_B Sulfate adenylate trans 100.0 5.9E-59 2E-63 514.9 39.8 386 264-666 22-410 (434)
9 1d2e_A Elongation factor TU (E 100.0 4E-53 1.4E-57 463.0 35.6 354 265-664 2-366 (397)
10 2c78_A Elongation factor TU-A; 100.0 2.5E-52 8.6E-57 457.9 32.9 363 263-664 8-384 (405)
11 1wb1_A Translation elongation 100.0 1E-50 3.5E-55 454.2 23.1 348 260-664 13-368 (482)
12 3avx_A Elongation factor TS, e 100.0 1.2E-48 4E-53 462.6 32.5 356 262-664 292-657 (1289)
13 2elf_A Protein translation elo 100.0 7E-49 2.4E-53 425.2 27.5 316 268-664 23-350 (370)
14 1s0u_A EIF-2-gamma, translatio 100.0 4.9E-47 1.7E-51 416.3 32.9 324 264-664 6-386 (408)
15 1kk1_A EIF2gamma; initiation o 100.0 9.8E-47 3.4E-51 414.1 35.2 324 264-664 8-388 (410)
16 3sjy_A Translation initiation 100.0 8.2E-45 2.8E-49 398.0 32.2 335 263-662 5-378 (403)
17 3vqt_A RF-3, peptide chain rel 100.0 1.8E-34 6.2E-39 326.9 21.7 280 262-582 27-403 (548)
18 2ywe_A GTP-binding protein LEP 100.0 7.1E-34 2.4E-38 323.6 23.2 267 265-581 5-282 (600)
19 3cb4_D GTP-binding protein LEP 100.0 1.1E-32 3.9E-37 314.2 27.0 267 265-581 3-280 (599)
20 3e1y_E Eukaryotic peptide chai 100.0 2.1E-32 7.2E-37 272.3 18.5 174 491-666 3-176 (204)
21 4fn5_A EF-G 1, elongation fact 100.0 2.8E-33 9.4E-38 326.9 11.1 275 264-583 11-408 (709)
22 1dar_A EF-G, elongation factor 100.0 2.8E-31 9.6E-36 308.7 27.4 333 264-641 10-456 (691)
23 2rdo_7 EF-G, elongation factor 100.0 1.4E-31 4.9E-36 311.6 22.3 273 264-581 8-403 (704)
24 3tr5_A RF-3, peptide chain rel 100.0 4.5E-31 1.5E-35 297.7 25.1 277 265-579 12-382 (528)
25 3j25_A Tetracycline resistance 100.0 4.1E-35 1.4E-39 338.2 -9.8 275 265-583 1-334 (638)
26 2h5e_A Peptide chain release f 100.0 1.7E-30 5.7E-35 293.3 23.9 274 265-579 12-383 (529)
27 3izy_P Translation initiation 100.0 2.4E-32 8.1E-37 307.4 6.3 253 265-581 3-261 (537)
28 1zo1_I IF2, translation initia 100.0 2.7E-31 9.2E-36 296.5 10.2 252 265-580 3-259 (501)
29 2xex_A Elongation factor G; GT 100.0 1.4E-30 4.8E-35 303.0 11.4 273 264-581 8-395 (693)
30 2dy1_A Elongation factor G; tr 100.0 2.4E-30 8.1E-35 299.9 9.7 269 265-581 8-368 (665)
31 1g7s_A Translation initiation 100.0 4.1E-29 1.4E-33 285.0 16.6 258 264-581 3-330 (594)
32 1n0u_A EF-2, elongation factor 99.9 3.3E-28 1.1E-32 288.5 9.7 289 265-581 18-475 (842)
33 2lkc_A Translation initiation 99.8 2.3E-20 7.9E-25 178.1 6.3 152 264-461 6-160 (178)
34 2hjg_A GTP-binding protein ENG 99.8 6.4E-19 2.2E-23 194.6 13.7 155 265-462 174-339 (436)
35 4dhe_A Probable GTP-binding pr 99.8 8.3E-19 2.8E-23 174.3 13.1 156 265-461 28-200 (223)
36 2y8e_A RAB-protein 6, GH09086P 99.8 2.8E-18 9.5E-23 163.3 15.9 152 262-461 10-166 (179)
37 3iev_A GTP-binding protein ERA 99.8 2E-18 6.8E-23 182.1 16.1 152 264-461 8-171 (308)
38 2ew1_A RAS-related protein RAB 99.8 3E-18 1E-22 169.2 15.6 165 249-461 9-178 (201)
39 1wf3_A GTP-binding protein; GT 99.8 2.4E-18 8.3E-23 180.9 15.7 147 265-461 6-162 (301)
40 2dyk_A GTP-binding protein; GT 99.8 3.4E-18 1.2E-22 160.1 15.1 143 267-461 2-151 (161)
41 2oil_A CATX-8, RAS-related pro 99.8 3.1E-18 1E-22 166.3 14.8 166 250-461 9-177 (193)
42 1r2q_A RAS-related protein RAB 99.8 6E-18 2.1E-22 159.4 16.0 152 264-461 4-158 (170)
43 4dcu_A GTP-binding protein ENG 99.8 1.7E-18 5.8E-23 192.3 14.0 156 264-462 193-359 (456)
44 2hxs_A RAB-26, RAS-related pro 99.8 5.7E-18 1.9E-22 161.5 14.8 151 264-461 4-162 (178)
45 2fg5_A RAB-22B, RAS-related pr 99.8 9E-18 3.1E-22 163.4 16.4 152 264-461 21-175 (192)
46 2bme_A RAB4A, RAS-related prot 99.8 1E-17 3.6E-22 161.0 16.6 150 264-461 8-162 (186)
47 3i8s_A Ferrous iron transport 99.8 3.1E-18 1.1E-22 177.6 13.6 145 265-461 2-158 (274)
48 3clv_A RAB5 protein, putative; 99.8 1.1E-17 3.7E-22 162.2 16.5 100 344-461 93-193 (208)
49 3tkl_A RAS-related protein RAB 99.8 8.2E-18 2.8E-22 163.1 15.6 150 264-461 14-168 (196)
50 1ek0_A Protein (GTP-binding pr 99.8 7E-18 2.4E-22 158.9 14.6 154 265-461 2-158 (170)
51 3tw8_B RAS-related protein RAB 99.8 4.7E-18 1.6E-22 162.0 13.5 150 264-461 7-160 (181)
52 2o52_A RAS-related protein RAB 99.8 3.8E-18 1.3E-22 167.5 13.2 164 250-461 9-177 (200)
53 2efe_B Small GTP-binding prote 99.8 9.7E-18 3.3E-22 160.3 15.5 153 263-461 9-164 (181)
54 1zd9_A ADP-ribosylation factor 99.8 8E-18 2.7E-22 163.2 15.1 152 264-461 20-174 (188)
55 3pqc_A Probable GTP-binding pr 99.8 1.5E-17 5.2E-22 160.6 16.8 150 264-461 21-183 (195)
56 1upt_A ARL1, ADP-ribosylation 99.8 9.6E-18 3.3E-22 158.6 15.0 151 264-461 5-158 (171)
57 1kao_A RAP2A; GTP-binding prot 99.8 5.9E-18 2E-22 158.7 13.4 153 265-461 2-155 (167)
58 1c1y_A RAS-related protein RAP 99.7 9.4E-18 3.2E-22 157.8 14.3 154 265-461 2-156 (167)
59 2hup_A RAS-related protein RAB 99.7 1.5E-17 5E-22 163.6 16.2 160 255-461 18-182 (201)
60 3iby_A Ferrous iron transport 99.7 4E-18 1.4E-22 175.2 12.4 151 267-484 2-164 (256)
61 2il1_A RAB12; G-protein, GDP, 99.7 1.3E-17 4.3E-22 162.6 15.3 154 261-461 21-179 (192)
62 2a5j_A RAS-related protein RAB 99.7 8.8E-18 3E-22 163.2 14.1 163 253-461 8-173 (191)
63 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.4E-18 2.5E-22 160.5 13.3 153 264-461 5-163 (177)
64 1z0j_A RAB-22, RAS-related pro 99.7 1.5E-17 5.3E-22 156.8 15.4 152 264-461 4-158 (170)
65 4bas_A ADP-ribosylation factor 99.7 1.1E-17 3.6E-22 162.7 14.6 156 261-461 12-178 (199)
66 2h57_A ADP-ribosylation factor 99.7 7.8E-18 2.7E-22 163.2 13.6 155 262-461 17-176 (190)
67 1ky3_A GTP-binding protein YPT 99.7 2.8E-18 9.7E-23 163.7 10.3 152 264-461 6-167 (182)
68 1u8z_A RAS-related protein RAL 99.7 1.6E-17 5.5E-22 155.9 15.1 151 264-461 2-156 (168)
69 2g6b_A RAS-related protein RAB 99.7 1.9E-17 6.4E-22 158.1 15.7 151 264-461 8-163 (180)
70 1z0f_A RAB14, member RAS oncog 99.7 1.3E-17 4.4E-22 158.7 14.2 152 264-461 13-167 (179)
71 3bc1_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 157.8 17.2 150 264-461 9-174 (195)
72 2wji_A Ferrous iron transport 99.7 9.5E-18 3.2E-22 159.4 13.0 145 265-461 2-154 (165)
73 2fu5_C RAS-related protein RAB 99.7 6.8E-18 2.3E-22 162.1 11.7 149 265-461 7-160 (183)
74 1svi_A GTP-binding protein YSX 99.7 2.5E-17 8.5E-22 159.8 15.8 150 265-461 22-184 (195)
75 1zj6_A ADP-ribosylation factor 99.7 1E-17 3.4E-22 162.1 13.0 150 265-461 15-167 (187)
76 2nzj_A GTP-binding protein REM 99.7 2E-17 7E-22 156.9 14.7 150 265-461 3-158 (175)
77 1r8s_A ADP-ribosylation factor 99.7 2.3E-17 8E-22 155.1 14.9 148 267-461 1-151 (164)
78 2p5s_A RAS and EF-hand domain 99.7 8.3E-18 2.9E-22 164.6 12.1 157 263-461 25-186 (199)
79 2h17_A ADP-ribosylation factor 99.7 7.5E-18 2.6E-22 162.3 11.5 155 260-461 15-172 (181)
80 2gf9_A RAS-related protein RAB 99.7 2E-17 6.9E-22 160.2 14.4 152 264-461 20-174 (189)
81 1z06_A RAS-related protein RAB 99.7 1.5E-17 5.3E-22 161.0 13.5 157 261-461 15-177 (189)
82 2a9k_A RAS-related protein RAL 99.7 3E-17 1E-21 157.3 15.4 154 263-461 15-170 (187)
83 2fh5_B SR-beta, signal recogni 99.7 3.6E-17 1.2E-21 161.6 16.2 154 264-461 5-205 (214)
84 1z08_A RAS-related protein RAB 99.7 2.8E-17 9.7E-22 155.2 14.8 149 265-461 5-158 (170)
85 1zbd_A Rabphilin-3A; G protein 99.7 5.3E-17 1.8E-21 158.8 17.2 151 265-461 7-160 (203)
86 3k53_A Ferrous iron transport 99.7 1.4E-17 4.9E-22 172.0 13.5 146 264-461 1-155 (271)
87 1z2a_A RAS-related protein RAB 99.7 2.8E-17 9.4E-22 154.7 14.3 149 265-461 4-156 (168)
88 2bov_A RAla, RAS-related prote 99.7 3.5E-17 1.2E-21 159.9 15.6 150 263-461 11-166 (206)
89 1g16_A RAS-related protein SEC 99.7 1.6E-17 5.6E-22 156.6 12.4 147 266-461 3-154 (170)
90 3a1s_A Iron(II) transport prot 99.7 1.7E-17 6E-22 170.5 13.6 146 264-461 3-156 (258)
91 3cph_A RAS-related protein SEC 99.7 1.8E-17 6.2E-22 163.0 13.2 149 264-461 18-171 (213)
92 2fn4_A P23, RAS-related protei 99.7 3.7E-17 1.3E-21 155.8 14.8 154 263-461 6-161 (181)
93 1fzq_A ADP-ribosylation factor 99.7 2.6E-17 9E-22 158.9 13.9 151 264-461 14-167 (181)
94 1ksh_A ARF-like protein 2; sma 99.7 1.9E-17 6.4E-22 159.6 12.8 151 264-461 16-169 (186)
95 3dz8_A RAS-related protein RAB 99.7 1.3E-17 4.6E-22 161.9 11.8 152 264-461 21-175 (191)
96 1vg8_A RAS-related protein RAB 99.7 7.6E-18 2.6E-22 165.0 10.0 151 264-461 6-164 (207)
97 3kkq_A RAS-related protein M-R 99.7 4.8E-17 1.6E-21 156.1 15.2 155 262-461 14-171 (183)
98 2erx_A GTP-binding protein DI- 99.7 7.7E-17 2.6E-21 152.0 16.2 149 266-461 3-156 (172)
99 3t1o_A Gliding protein MGLA; G 99.7 3.4E-17 1.2E-21 158.3 14.1 160 264-461 12-181 (198)
100 1m2o_B GTP-binding protein SAR 99.7 1.6E-17 5.5E-22 161.8 11.7 150 265-461 22-181 (190)
101 1x3s_A RAS-related protein RAB 99.7 2.4E-17 8.1E-22 159.5 12.7 152 263-461 12-167 (195)
102 3q72_A GTP-binding protein RAD 99.7 2E-17 6.8E-22 155.8 11.8 148 266-461 2-153 (166)
103 2ce2_X GTPase HRAS; signaling 99.7 7.5E-17 2.6E-21 150.7 15.5 149 265-461 2-154 (166)
104 4dsu_A GTPase KRAS, isoform 2B 99.7 2.1E-17 7.2E-22 158.9 12.0 147 265-461 3-155 (189)
105 2bcg_Y Protein YP2, GTP-bindin 99.7 4.1E-17 1.4E-21 160.2 13.9 150 264-461 6-160 (206)
106 2b6h_A ADP-ribosylation factor 99.7 5E-17 1.7E-21 158.6 14.3 151 264-461 27-180 (192)
107 2f7s_A C25KG, RAS-related prot 99.7 6.7E-17 2.3E-21 160.0 15.3 148 263-461 22-188 (217)
108 3t5g_A GTP-binding protein RHE 99.7 2.2E-17 7.6E-22 158.2 11.4 154 265-461 5-158 (181)
109 4dkx_A RAS-related protein RAB 99.7 3.6E-17 1.2E-21 163.8 13.3 155 262-461 9-165 (216)
110 1ega_A Protein (GTP-binding pr 99.7 1.8E-17 6.2E-22 174.2 11.6 149 265-461 7-164 (301)
111 2wjg_A FEOB, ferrous iron tran 99.7 4.9E-17 1.7E-21 156.8 13.5 147 263-461 4-158 (188)
112 2qu8_A Putative nucleolar GTP- 99.7 1.6E-16 5.3E-21 159.3 17.6 157 264-461 27-194 (228)
113 3llu_A RAS-related GTP-binding 99.7 4.4E-17 1.5E-21 159.2 12.9 162 261-461 15-186 (196)
114 1mh1_A RAC1; GTP-binding, GTPa 99.7 6.7E-17 2.3E-21 154.9 13.9 156 264-461 3-169 (186)
115 1mky_A Probable GTP-binding pr 99.7 5.5E-17 1.9E-21 179.2 15.0 144 267-461 2-155 (439)
116 4gzl_A RAS-related C3 botulinu 99.7 4.9E-17 1.7E-21 160.2 13.0 154 264-461 28-194 (204)
117 2hjg_A GTP-binding protein ENG 99.7 2.1E-17 7.1E-22 182.5 11.1 144 266-461 3-154 (436)
118 2gj8_A MNME, tRNA modification 99.7 4.3E-17 1.5E-21 156.3 11.8 141 266-461 4-155 (172)
119 3reg_A RHO-like small GTPase; 99.7 5.7E-17 1.9E-21 157.7 12.8 155 263-461 20-177 (194)
120 3cpj_B GTP-binding protein YPT 99.7 4.9E-17 1.7E-21 162.3 12.5 150 264-461 11-165 (223)
121 1f6b_A SAR1; gtpases, N-termin 99.7 2.4E-17 8.1E-22 161.8 9.5 154 265-461 24-188 (198)
122 1mky_A Probable GTP-binding pr 99.7 8.3E-17 2.8E-21 177.8 14.9 154 265-461 179-344 (439)
123 3con_A GTPase NRAS; structural 99.7 1.5E-16 5.2E-21 153.7 15.0 151 261-461 16-172 (190)
124 1moz_A ARL1, ADP-ribosylation 99.7 2.8E-17 9.7E-22 157.5 9.6 150 264-461 16-169 (183)
125 3gj0_A GTP-binding nuclear pro 99.7 7.3E-17 2.5E-21 160.5 12.7 154 260-461 9-164 (221)
126 2gco_A H9, RHO-related GTP-bin 99.7 6.5E-17 2.2E-21 158.6 11.7 156 263-461 22-189 (201)
127 3oes_A GTPase rhebl1; small GT 99.7 5.7E-17 2E-21 158.9 10.9 150 264-461 22-176 (201)
128 2j1l_A RHO-related GTP-binding 99.7 2.4E-16 8.2E-21 156.4 15.5 154 264-461 32-198 (214)
129 2gf0_A GTP-binding protein DI- 99.7 2.7E-16 9.2E-21 152.8 15.5 149 265-461 7-160 (199)
130 2x77_A ADP-ribosylation factor 99.7 3.6E-17 1.2E-21 158.2 9.1 151 264-461 20-173 (189)
131 3q85_A GTP-binding protein REM 99.7 1.2E-16 4E-21 151.0 12.4 149 266-461 2-156 (169)
132 3qq5_A Small GTP-binding prote 99.7 1.9E-17 6.4E-22 181.7 7.8 145 265-461 33-185 (423)
133 3b1v_A Ferrous iron uptake tra 99.7 6.1E-17 2.1E-21 167.8 10.7 143 266-461 3-153 (272)
134 2atx_A Small GTP binding prote 99.7 1E-16 3.5E-21 155.7 11.4 154 265-461 17-182 (194)
135 4djt_A GTP-binding nuclear pro 99.7 6.5E-17 2.2E-21 160.2 10.2 155 264-461 9-164 (218)
136 3o47_A ADP-ribosylation factor 99.7 1.2E-16 4.2E-21 170.0 12.5 151 264-461 163-316 (329)
137 2yc2_C IFT27, small RAB-relate 99.7 8.4E-17 2.9E-21 157.3 10.2 152 264-461 18-181 (208)
138 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-16 3.8E-21 157.7 11.1 155 264-461 23-189 (207)
139 3ihw_A Centg3; RAS, centaurin, 99.7 3.2E-16 1.1E-20 151.9 14.2 149 261-461 15-169 (184)
140 2atv_A RERG, RAS-like estrogen 99.7 4.4E-16 1.5E-20 151.8 14.9 153 264-461 26-180 (196)
141 2q3h_A RAS homolog gene family 99.7 1.7E-16 5.7E-21 155.1 11.9 157 262-461 16-184 (201)
142 2xtp_A GTPase IMAP family memb 99.7 1.3E-16 4.3E-21 163.4 11.1 156 264-461 20-197 (260)
143 3bwd_D RAC-like GTP-binding pr 99.7 8.2E-17 2.8E-21 154.0 9.0 156 264-461 6-170 (182)
144 3r7w_A Gtpase1, GTP-binding pr 99.7 6E-16 2.1E-20 163.0 16.0 158 266-461 3-170 (307)
145 2j0v_A RAC-like GTP-binding pr 99.7 2.6E-16 8.8E-21 155.2 12.0 157 264-461 7-169 (212)
146 3l0i_B RAS-related protein RAB 99.7 6.5E-18 2.2E-22 165.4 0.1 150 264-461 31-185 (199)
147 3q3j_B RHO-related GTP-binding 99.7 2.6E-16 8.9E-21 156.4 11.6 159 261-461 22-192 (214)
148 4dcu_A GTP-binding protein ENG 99.7 2.4E-16 8.2E-21 175.0 12.1 147 263-461 20-174 (456)
149 3cbq_A GTP-binding protein REM 99.7 5.8E-16 2E-20 151.7 13.1 151 263-461 20-177 (195)
150 3gee_A MNME, tRNA modification 99.7 3.5E-16 1.2E-20 174.2 12.8 147 265-461 232-387 (476)
151 3lxw_A GTPase IMAP family memb 99.6 5.3E-16 1.8E-20 158.3 12.9 152 263-461 18-197 (247)
152 1m7b_A RND3/RHOE small GTP-bin 99.6 4.7E-16 1.6E-20 150.0 11.0 155 264-461 5-172 (184)
153 2iwr_A Centaurin gamma 1; ANK 99.6 9E-16 3.1E-20 146.5 12.5 148 264-461 5-158 (178)
154 3c5c_A RAS-like protein 12; GD 99.6 1.2E-15 4.1E-20 148.0 13.5 150 264-461 19-175 (187)
155 1gwn_A RHO-related GTP-binding 99.6 5.8E-16 2E-20 153.1 10.7 156 263-461 25-193 (205)
156 2cxx_A Probable GTP-binding pr 99.6 1E-15 3.5E-20 147.3 11.8 150 267-461 2-173 (190)
157 3lvq_E ARF-GAP with SH3 domain 99.6 1.5E-15 5E-20 170.2 14.8 152 263-461 319-473 (497)
158 3t5d_A Septin-7; GTP-binding p 99.6 1.7E-15 5.7E-20 156.8 13.8 158 265-461 7-193 (274)
159 1xzp_A Probable tRNA modificat 99.6 5.3E-16 1.8E-20 172.9 10.6 143 266-461 243-394 (482)
160 2qtf_A Protein HFLX, GTP-bindi 99.6 1.2E-15 4.3E-20 164.3 10.4 154 266-461 179-343 (364)
161 3geh_A MNME, tRNA modification 99.6 9.9E-16 3.4E-20 170.0 9.4 143 265-461 223-373 (462)
162 3th5_A RAS-related C3 botulinu 99.4 7.4E-17 2.5E-21 158.3 0.0 155 264-461 28-194 (204)
163 2g3y_A GTP-binding protein GEM 99.6 5.8E-15 2E-19 147.2 12.6 152 265-461 36-192 (211)
164 2wkq_A NPH1-1, RAS-related C3 99.6 1.9E-14 6.5E-19 151.3 15.0 153 265-461 154-319 (332)
165 1lnz_A SPO0B-associated GTP-bi 99.6 3.3E-15 1.1E-19 159.6 8.6 149 266-461 158-319 (342)
166 2cjw_A GTP-binding protein GEM 99.6 1.3E-14 4.6E-19 141.5 12.3 152 265-461 5-161 (192)
167 2zej_A Dardarin, leucine-rich 99.6 8.5E-15 2.9E-19 141.4 10.5 157 266-461 2-167 (184)
168 1nrj_B SR-beta, signal recogni 99.6 5.6E-15 1.9E-19 146.2 9.0 149 264-459 10-171 (218)
169 3lxx_A GTPase IMAP family memb 99.6 1.9E-14 6.5E-19 145.4 13.0 149 264-456 27-193 (239)
170 3def_A T7I23.11 protein; chlor 99.5 1.2E-14 4.2E-19 149.3 10.8 127 264-427 34-173 (262)
171 2aka_B Dynamin-1; fusion prote 99.5 2.2E-14 7.5E-19 149.2 12.2 104 343-461 124-242 (299)
172 1h65_A Chloroplast outer envel 99.5 5.7E-14 1.9E-18 144.9 15.1 121 264-421 37-170 (270)
173 2e87_A Hypothetical protein PH 99.5 7.4E-14 2.5E-18 150.0 16.3 151 264-461 165-325 (357)
174 3dpu_A RAB family protein; roc 99.5 2.3E-14 7.9E-19 162.1 11.3 150 263-461 38-197 (535)
175 2f9l_A RAB11B, member RAS onco 99.5 1.7E-13 5.9E-18 133.9 14.1 148 266-461 5-157 (199)
176 1pui_A ENGB, probable GTP-bind 99.5 1.7E-13 5.9E-18 134.5 13.6 151 265-461 25-188 (210)
177 1jwy_B Dynamin A GTPase domain 99.5 1.1E-13 3.7E-18 145.3 9.4 72 342-420 129-213 (315)
178 2j69_A Bacterial dynamin-like 99.4 4.3E-13 1.5E-17 156.1 14.9 67 344-419 174-244 (695)
179 3c5h_A Glucocorticoid receptor 99.4 4.8E-14 1.6E-18 144.4 5.2 83 367-461 162-244 (255)
180 1oix_A RAS-related protein RAB 99.4 1E-12 3.6E-17 127.8 14.4 149 265-461 28-181 (191)
181 2ged_A SR-beta, signal recogni 99.4 7.8E-14 2.7E-18 134.9 6.1 128 264-435 46-184 (193)
182 3r7w_B Gtpase2, GTP-binding pr 99.4 1.7E-13 5.9E-18 144.7 8.2 156 268-461 1-163 (331)
183 1wxq_A GTP-binding protein; st 99.4 4.7E-13 1.6E-17 145.8 9.5 83 267-380 1-114 (397)
184 2qag_A Septin-2, protein NEDD5 99.4 6.2E-13 2.1E-17 143.2 9.8 156 265-458 36-220 (361)
185 3p32_A Probable GTPase RV1496/ 99.3 3.1E-12 1E-16 137.4 12.4 103 341-461 169-273 (355)
186 1udx_A The GTP-binding protein 99.3 2.6E-12 8.9E-17 140.5 10.1 148 267-461 158-314 (416)
187 2x2e_A Dynamin-1; nitration, h 99.3 1.8E-12 6.1E-17 139.0 7.9 105 342-461 128-247 (353)
188 2qpt_A EH domain-containing pr 99.3 4.8E-12 1.6E-16 143.4 11.5 79 344-432 154-243 (550)
189 2www_A Methylmalonic aciduria 99.3 6.8E-12 2.3E-16 134.4 11.7 103 341-461 164-268 (349)
190 2p67_A LAO/AO transport system 99.3 3.9E-12 1.3E-16 135.8 9.2 103 341-461 146-250 (341)
191 3zvr_A Dynamin-1; hydrolase, D 99.3 4.7E-12 1.6E-16 147.0 9.7 182 265-462 50-268 (772)
192 3t34_A Dynamin-related protein 99.3 6.8E-12 2.3E-16 134.7 9.4 105 342-462 134-251 (360)
193 2wsm_A Hydrogenase expression/ 99.3 1.6E-12 5.5E-17 128.8 4.1 97 342-461 107-203 (221)
194 4a9a_A Ribosome-interacting GT 99.2 1.7E-11 5.9E-16 132.1 7.8 115 264-418 70-195 (376)
195 1yrb_A ATP(GTP)binding protein 99.2 2.4E-10 8.3E-15 116.2 14.3 108 344-461 109-246 (262)
196 1jal_A YCHF protein; nucleotid 99.0 3.6E-10 1.2E-14 121.2 9.5 82 267-379 3-108 (363)
197 2qag_C Septin-7; cell cycle, c 99.0 7.2E-10 2.5E-14 121.2 12.0 157 265-461 30-216 (418)
198 2qnr_A Septin-2, protein NEDD5 99.0 8.2E-10 2.8E-14 115.8 11.2 158 265-461 17-203 (301)
199 1zcb_A G alpha I/13; GTP-bindi 99.0 1.1E-09 3.8E-14 117.7 10.9 129 331-461 188-342 (362)
200 2dby_A GTP-binding protein; GD 99.0 9.8E-10 3.3E-14 118.3 9.1 37 343-379 68-111 (368)
201 1cip_A Protein (guanine nucleo 99.0 1.6E-09 5.5E-14 116.1 10.6 129 331-461 180-333 (353)
202 2hf9_A Probable hydrogenase ni 98.9 2.9E-09 9.9E-14 105.6 10.3 95 344-461 119-213 (226)
203 2qm8_A GTPase/ATPase; G protei 98.9 3E-09 1E-13 113.3 10.1 104 341-461 145-250 (337)
204 3ohm_A Guanine nucleotide-bind 98.9 3E-09 1E-13 112.6 9.8 127 330-461 153-307 (327)
205 1xe1_A Hypothetical protein PF 98.9 7.5E-09 2.6E-13 91.7 10.0 81 492-577 32-113 (116)
206 4fid_A G protein alpha subunit 98.9 3.9E-09 1.3E-13 112.2 9.2 88 330-419 147-242 (340)
207 2j37_W Signal recognition part 98.8 4.9E-09 1.7E-13 117.1 6.5 66 342-419 182-254 (504)
208 2qag_B Septin-6, protein NEDD5 98.7 3.4E-08 1.2E-12 107.9 11.9 145 265-453 41-217 (427)
209 3ec1_A YQEH GTPase; atnos1, at 98.7 3.2E-09 1.1E-13 114.5 2.9 146 267-459 163-318 (369)
210 3h2y_A GTPase family protein; 98.7 6E-09 2.1E-13 112.3 2.8 147 267-459 161-317 (368)
211 3sop_A Neuronal-specific septi 98.6 3.6E-07 1.2E-11 94.2 13.6 142 266-441 2-174 (270)
212 2ohf_A Protein OLA1, GTP-bindi 98.6 4.6E-08 1.6E-12 105.9 6.2 84 265-379 21-128 (396)
213 1tq4_A IIGP1, interferon-induc 98.6 7E-07 2.4E-11 97.4 15.3 151 266-461 69-242 (413)
214 1nj3_A NPL4; NZF domain, rubre 98.4 8.9E-08 3.1E-12 65.3 2.4 26 49-74 5-30 (31)
215 1u0l_A Probable GTPase ENGC; p 98.4 3.8E-07 1.3E-11 95.4 7.8 99 345-461 64-162 (301)
216 2d9g_A YY1-associated factor 2 98.4 1.4E-07 4.7E-12 72.4 3.0 33 44-76 5-37 (53)
217 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 5.9E-07 2E-11 97.3 8.1 85 265-379 19-127 (392)
218 3a9j_C Mitogen-activated prote 98.3 1.7E-07 5.8E-12 65.3 2.4 28 48-75 6-33 (34)
219 2crc_A Ubiquitin conjugating e 98.3 4.9E-07 1.7E-11 68.8 4.4 34 47-80 7-40 (52)
220 3dm5_A SRP54, signal recogniti 98.3 3.3E-06 1.1E-10 92.6 11.4 95 342-462 181-281 (443)
221 1azs_C GS-alpha; complex (lyas 98.2 8.3E-07 2.8E-11 96.4 6.0 86 331-418 204-297 (402)
222 3b08_B Ranbp-type and C3HC4-ty 98.2 6.3E-07 2.2E-11 70.8 3.1 32 49-80 7-38 (64)
223 2v3c_C SRP54, signal recogniti 98.2 1.8E-06 6.2E-11 94.7 7.5 66 342-418 179-251 (432)
224 2xtz_A Guanine nucleotide-bind 98.2 9.2E-07 3.1E-11 94.6 4.4 75 342-418 181-263 (354)
225 3kl4_A SRP54, signal recogniti 98.0 1.9E-05 6.4E-10 86.5 12.1 93 342-461 178-279 (433)
226 1puj_A YLQF, conserved hypothe 98.0 8.5E-06 2.9E-10 84.4 8.7 92 348-461 3-95 (282)
227 2yv5_A YJEQ protein; hydrolase 98.0 6.9E-06 2.3E-10 85.9 7.6 94 354-462 66-159 (302)
228 1j8m_F SRP54, signal recogniti 98.0 6.1E-05 2.1E-09 78.6 13.2 94 342-461 179-280 (297)
229 1puj_A YLQF, conserved hypothe 97.9 5.6E-06 1.9E-10 85.8 5.1 58 265-355 119-176 (282)
230 1f5n_A Interferon-induced guan 97.9 3.8E-06 1.3E-10 95.4 2.7 26 264-289 36-61 (592)
231 3ec1_A YQEH GTPase; atnos1, at 97.7 3.4E-05 1.1E-09 83.0 6.8 99 348-461 53-151 (369)
232 3h2y_A GTPase family protein; 97.7 4.3E-05 1.5E-09 82.1 7.6 95 353-461 55-149 (368)
233 3e70_C DPA, signal recognition 97.7 4.3E-05 1.5E-09 80.8 7.4 92 343-461 211-309 (328)
234 1d1n_A Initiation factor 2; be 97.6 6.7E-05 2.3E-09 64.7 5.9 78 497-577 9-90 (99)
235 2xxa_A Signal recognition part 97.6 5E-05 1.7E-09 83.3 6.5 65 342-418 182-253 (433)
236 3cnl_A YLQF, putative uncharac 97.5 3.9E-05 1.3E-09 78.5 3.5 86 351-461 4-90 (262)
237 3cnl_A YLQF, putative uncharac 97.5 3.1E-05 1.1E-09 79.3 2.7 23 267-289 100-122 (262)
238 1t9h_A YLOQ, probable GTPase E 97.5 0.00022 7.5E-09 74.6 9.1 85 364-462 83-167 (307)
239 2crv_A IF-2MT, translation ini 97.5 0.00026 8.7E-09 63.1 8.0 80 496-578 12-99 (120)
240 3gj3_B Nuclear pore complex pr 97.4 4.4E-05 1.5E-09 52.4 1.9 29 47-75 4-32 (33)
241 2yhs_A FTSY, cell division pro 97.4 9E-05 3.1E-09 82.1 5.4 25 265-289 292-316 (503)
242 3szr_A Interferon-induced GTP- 97.4 0.00027 9.1E-09 80.9 9.3 24 266-289 45-68 (608)
243 3l82_B F-box only protein 4; T 97.3 0.00038 1.3E-08 68.6 7.3 97 353-461 111-212 (227)
244 4dzz_A Plasmid partitioning pr 97.1 0.0026 8.8E-08 61.2 11.0 65 342-418 74-143 (206)
245 1rj9_A FTSY, signal recognitio 97.1 0.00036 1.2E-08 72.9 5.2 24 266-289 102-125 (304)
246 1vma_A Cell division protein F 97.1 0.0018 6E-08 67.7 10.1 24 266-289 104-127 (306)
247 1zo1_I IF2, translation initia 97.0 0.0016 5.6E-08 72.5 9.7 100 476-578 386-493 (501)
248 2ebq_A Nuclear pore complex pr 97.0 0.00037 1.3E-08 51.6 2.9 34 44-77 5-38 (47)
249 3l2o_B F-box only protein 4; s 97.0 0.0009 3.1E-08 69.1 6.7 98 352-461 195-297 (312)
250 2px0_A Flagellar biosynthesis 97.0 0.001 3.6E-08 69.1 7.0 24 266-289 105-128 (296)
251 1zu4_A FTSY; GTPase, signal re 96.9 0.0012 4E-08 69.5 7.0 24 266-289 105-128 (320)
252 2ffh_A Protein (FFH); SRP54, s 96.9 0.0042 1.4E-07 67.8 11.5 65 342-418 179-250 (425)
253 3q5d_A Atlastin-1; G protein, 96.8 0.0033 1.1E-07 69.0 10.0 26 264-289 65-90 (447)
254 3gj5_B Nuclear pore complex pr 96.7 0.00058 2E-08 47.1 1.8 29 47-75 4-32 (34)
255 2ebr_A Nuclear pore complex pr 96.6 0.0015 5.2E-08 48.4 3.4 31 47-77 8-38 (47)
256 3b9q_A Chloroplast SRP recepto 96.5 0.0027 9.4E-08 66.1 6.0 24 266-289 100-123 (302)
257 2rcn_A Probable GTPase ENGC; Y 96.4 0.0073 2.5E-07 64.4 9.2 82 364-461 127-208 (358)
258 3izy_P Translation initiation 96.4 0.0089 3E-07 67.1 10.1 97 477-576 430-534 (537)
259 2og2_A Putative signal recogni 96.2 0.0043 1.5E-07 66.2 5.9 24 266-289 157-180 (359)
260 1w7p_D VPS36P, YLR417W; ESCRT- 96.2 0.00076 2.6E-08 75.4 0.0 27 50-76 180-206 (566)
261 1ls1_A Signal recognition part 96.1 0.026 8.9E-07 58.4 11.2 24 266-289 98-121 (295)
262 3cwq_A Para family chromosome 96.1 0.032 1.1E-06 54.4 11.0 66 342-418 66-133 (209)
263 1g7s_A Translation initiation 96.0 0.024 8.2E-07 64.5 11.0 84 493-578 462-549 (594)
264 3gj7_B Nuclear pore complex pr 95.5 0.0044 1.5E-07 53.5 1.9 29 47-75 69-97 (98)
265 1t9h_A YLOQ, probable GTPase E 95.2 0.0039 1.3E-07 65.1 0.4 23 267-289 174-196 (307)
266 2lk0_A RNA-binding protein 5; 95.1 0.0076 2.6E-07 41.0 1.6 29 47-75 2-30 (32)
267 2ebv_A Nuclear pore complex pr 94.7 0.017 5.8E-07 44.5 2.7 29 47-75 28-56 (57)
268 2k1p_A Zinc finger RAN-binding 94.5 0.025 8.6E-07 38.7 3.0 29 47-75 3-31 (33)
269 3end_A Light-independent proto 94.5 0.093 3.2E-06 53.9 8.7 67 342-417 155-225 (307)
270 1bif_A 6-phosphofructo-2-kinas 94.4 0.023 7.9E-07 62.6 4.1 25 265-289 38-62 (469)
271 1ye8_A Protein THEP1, hypothet 94.4 0.022 7.6E-07 54.3 3.4 23 268-290 2-24 (178)
272 1lvg_A Guanylate kinase, GMP k 94.2 0.022 7.6E-07 55.0 3.2 24 267-290 5-28 (198)
273 1kgd_A CASK, peripheral plasma 94.2 0.028 9.5E-07 53.3 3.7 24 267-290 6-29 (180)
274 3gj7_B Nuclear pore complex pr 94.0 0.0095 3.3E-07 51.4 0.0 31 47-77 6-36 (98)
275 3tr0_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 53.5 3.2 24 267-290 8-31 (205)
276 1knq_A Gluconate kinase; ALFA/ 93.7 0.052 1.8E-06 50.7 4.5 27 266-292 8-34 (175)
277 3a00_A Guanylate kinase, GMP k 93.7 0.032 1.1E-06 53.1 3.1 23 268-290 3-25 (186)
278 3ney_A 55 kDa erythrocyte memb 93.7 0.04 1.4E-06 53.7 3.7 27 264-290 17-43 (197)
279 1znw_A Guanylate kinase, GMP k 93.6 0.034 1.2E-06 53.9 3.2 23 268-290 22-44 (207)
280 3c8u_A Fructokinase; YP_612366 93.6 0.043 1.5E-06 53.2 3.8 26 265-290 21-46 (208)
281 1kag_A SKI, shikimate kinase I 93.4 0.044 1.5E-06 51.0 3.5 26 267-292 5-30 (173)
282 1z6g_A Guanylate kinase; struc 93.4 0.039 1.3E-06 54.2 3.2 23 268-290 25-47 (218)
283 3asz_A Uridine kinase; cytidin 93.3 0.052 1.8E-06 52.4 3.9 26 266-291 6-31 (211)
284 4ido_A Atlastin-1; GTPase, GTP 93.3 0.28 9.7E-06 53.6 10.0 25 264-288 65-89 (457)
285 3t61_A Gluconokinase; PSI-biol 93.2 0.053 1.8E-06 52.0 3.8 27 266-292 18-44 (202)
286 3tau_A Guanylate kinase, GMP k 93.2 0.052 1.8E-06 52.7 3.8 25 266-290 8-32 (208)
287 4eun_A Thermoresistant glucoki 93.2 0.056 1.9E-06 52.0 3.9 28 266-293 29-56 (200)
288 1zp6_A Hypothetical protein AT 93.1 0.059 2E-06 51.0 3.9 23 267-289 10-32 (191)
289 1s96_A Guanylate kinase, GMP k 93.1 0.047 1.6E-06 53.9 3.2 25 266-290 16-40 (219)
290 1uj2_A Uridine-cytidine kinase 93.0 0.06 2.1E-06 53.9 4.0 28 264-291 20-47 (252)
291 2bbw_A Adenylate kinase 4, AK4 93.0 0.061 2.1E-06 53.5 4.0 28 266-293 27-54 (246)
292 2ph1_A Nucleotide-binding prot 93.0 0.2 7E-06 50.2 8.0 67 342-417 127-194 (262)
293 1tev_A UMP-CMP kinase; ploop, 93.0 0.061 2.1E-06 50.7 3.8 28 265-292 2-29 (196)
294 2j41_A Guanylate kinase; GMP, 92.9 0.064 2.2E-06 51.3 3.8 24 267-290 7-30 (207)
295 1cke_A CK, MSSA, protein (cyti 92.8 0.067 2.3E-06 52.1 3.9 25 267-291 6-30 (227)
296 1htw_A HI0065; nucleotide-bind 92.8 0.062 2.1E-06 50.3 3.4 23 268-290 35-57 (158)
297 3kb2_A SPBC2 prophage-derived 92.8 0.066 2.2E-06 49.4 3.6 24 268-291 3-26 (173)
298 3lw7_A Adenylate kinase relate 92.7 0.067 2.3E-06 49.2 3.6 25 267-292 2-26 (179)
299 1qhx_A CPT, protein (chloramph 92.7 0.075 2.6E-06 49.6 3.9 25 267-291 4-28 (178)
300 4gp7_A Metallophosphoesterase; 92.7 0.055 1.9E-06 50.9 2.9 20 268-287 11-30 (171)
301 2rhm_A Putative kinase; P-loop 92.6 0.094 3.2E-06 49.5 4.5 27 266-292 5-31 (193)
302 1kht_A Adenylate kinase; phosp 92.5 0.063 2.1E-06 50.5 3.2 26 266-291 3-28 (192)
303 2jeo_A Uridine-cytidine kinase 92.5 0.082 2.8E-06 52.6 4.2 27 266-292 25-51 (245)
304 3gj8_B Nuclear pore complex pr 92.5 0.045 1.5E-06 46.6 1.8 29 47-75 62-90 (92)
305 2plr_A DTMP kinase, probable t 92.5 0.086 2.9E-06 50.5 4.1 28 265-292 3-30 (213)
306 2rcn_A Probable GTPase ENGC; Y 92.5 0.061 2.1E-06 57.3 3.3 22 268-289 217-238 (358)
307 3cm0_A Adenylate kinase; ATP-b 92.5 0.082 2.8E-06 49.7 3.9 27 266-292 4-30 (186)
308 1n0z_A ZNF265; zinc finger, RN 92.4 0.11 3.6E-06 38.2 3.5 30 47-76 11-42 (45)
309 1np6_A Molybdopterin-guanine d 92.3 0.083 2.8E-06 50.3 3.7 24 266-289 6-29 (174)
310 1g3q_A MIND ATPase, cell divis 92.3 0.27 9.4E-06 48.0 7.7 66 343-418 111-176 (237)
311 3trf_A Shikimate kinase, SK; a 92.3 0.086 2.9E-06 49.6 3.8 27 266-292 5-31 (185)
312 3tif_A Uncharacterized ABC tra 92.3 0.057 2E-06 53.8 2.7 22 268-289 33-54 (235)
313 2pcj_A ABC transporter, lipopr 92.3 0.062 2.1E-06 53.2 2.9 21 268-288 32-52 (224)
314 2qor_A Guanylate kinase; phosp 92.2 0.076 2.6E-06 51.2 3.3 26 265-290 11-36 (204)
315 2bdt_A BH3686; alpha-beta prot 92.2 0.076 2.6E-06 50.3 3.3 23 268-290 4-26 (189)
316 2jaq_A Deoxyguanosine kinase; 92.1 0.089 3E-06 50.0 3.7 25 268-292 2-26 (205)
317 2wwf_A Thymidilate kinase, put 92.1 0.1 3.5E-06 50.0 4.2 26 265-290 9-34 (212)
318 3kjh_A CO dehydrogenase/acetyl 92.1 0.14 4.7E-06 50.3 5.1 66 342-417 130-195 (254)
319 3gj8_B Nuclear pore complex pr 92.0 0.029 9.8E-07 47.9 0.0 29 48-76 6-34 (92)
320 2yv5_A YJEQ protein; hydrolase 92.0 0.077 2.6E-06 55.0 3.3 21 267-287 166-186 (302)
321 2onk_A Molybdate/tungstate ABC 92.0 0.077 2.6E-06 53.1 3.2 22 268-289 26-47 (240)
322 1ex7_A Guanylate kinase; subst 91.9 0.078 2.7E-06 51.1 3.0 21 269-289 4-24 (186)
323 2v9p_A Replication protein E1; 91.9 0.082 2.8E-06 55.0 3.4 22 268-289 128-149 (305)
324 3b85_A Phosphate starvation-in 91.9 0.074 2.5E-06 52.1 2.9 22 268-289 24-45 (208)
325 2if2_A Dephospho-COA kinase; a 91.9 0.1 3.5E-06 50.0 3.8 25 267-292 2-26 (204)
326 2c95_A Adenylate kinase 1; tra 91.8 0.12 4E-06 49.0 4.1 28 265-292 8-35 (196)
327 3fb4_A Adenylate kinase; psych 91.8 0.1 3.5E-06 50.5 3.8 25 268-292 2-26 (216)
328 2eyu_A Twitching motility prot 91.8 0.091 3.1E-06 53.3 3.5 23 267-289 26-48 (261)
329 1ly1_A Polynucleotide kinase; 91.8 0.097 3.3E-06 48.7 3.5 22 267-288 3-24 (181)
330 2cbz_A Multidrug resistance-as 91.7 0.073 2.5E-06 53.1 2.7 21 268-288 33-53 (237)
331 3vaa_A Shikimate kinase, SK; s 91.7 0.11 3.9E-06 49.7 4.0 26 267-292 26-51 (199)
332 2pze_A Cystic fibrosis transme 91.7 0.075 2.6E-06 52.7 2.7 21 268-288 36-56 (229)
333 1uf9_A TT1252 protein; P-loop, 91.7 0.11 3.9E-06 49.3 3.9 26 264-289 6-31 (203)
334 2d2e_A SUFC protein; ABC-ATPas 91.6 0.089 3E-06 52.9 3.2 21 268-288 31-51 (250)
335 3iij_A Coilin-interacting nucl 91.6 0.12 4.1E-06 48.5 3.9 28 265-292 10-37 (180)
336 1mv5_A LMRA, multidrug resista 91.6 0.077 2.6E-06 53.1 2.7 22 268-289 30-51 (243)
337 2i3b_A HCR-ntpase, human cance 91.6 0.087 3E-06 50.7 3.0 22 268-289 3-24 (189)
338 3tlx_A Adenylate kinase 2; str 91.6 0.13 4.4E-06 51.3 4.3 28 265-292 28-55 (243)
339 3dl0_A Adenylate kinase; phosp 91.6 0.11 3.9E-06 50.2 3.8 25 268-292 2-26 (216)
340 3aez_A Pantothenate kinase; tr 91.6 0.12 4E-06 53.9 4.1 26 265-290 89-114 (312)
341 1g6h_A High-affinity branched- 91.5 0.078 2.7E-06 53.6 2.7 22 268-289 35-56 (257)
342 2ff7_A Alpha-hemolysin translo 91.5 0.08 2.7E-06 53.2 2.7 22 268-289 37-58 (247)
343 4e22_A Cytidylate kinase; P-lo 91.4 0.13 4.3E-06 51.7 4.1 29 265-293 26-54 (252)
344 4g1u_C Hemin import ATP-bindin 91.4 0.079 2.7E-06 53.9 2.6 22 268-289 39-60 (266)
345 1b0u_A Histidine permease; ABC 91.4 0.082 2.8E-06 53.6 2.7 21 268-288 34-54 (262)
346 3tqc_A Pantothenate kinase; bi 91.4 0.15 5E-06 53.5 4.6 27 264-290 90-116 (321)
347 3gfo_A Cobalt import ATP-bindi 91.4 0.082 2.8E-06 54.1 2.7 22 268-289 36-57 (275)
348 1sgw_A Putative ABC transporte 91.4 0.079 2.7E-06 52.1 2.4 22 268-289 37-58 (214)
349 1hyq_A MIND, cell division inh 91.4 0.3 1E-05 48.7 6.8 66 343-418 110-175 (263)
350 1y63_A LMAJ004144AAA protein; 91.4 0.15 5.1E-06 48.3 4.3 25 265-289 9-33 (184)
351 1ji0_A ABC transporter; ATP bi 91.3 0.086 2.9E-06 52.7 2.7 22 268-289 34-55 (240)
352 2f1r_A Molybdopterin-guanine d 91.3 0.062 2.1E-06 51.0 1.5 22 267-288 3-24 (171)
353 1nks_A Adenylate kinase; therm 91.3 0.11 3.8E-06 48.8 3.4 24 268-291 3-26 (194)
354 1xjc_A MOBB protein homolog; s 91.3 0.12 4.2E-06 49.0 3.6 24 266-289 4-27 (169)
355 2zu0_C Probable ATP-dependent 91.3 0.1 3.4E-06 53.1 3.2 22 268-289 48-69 (267)
356 2cdn_A Adenylate kinase; phosp 91.3 0.14 4.8E-06 49.0 4.1 29 264-292 18-46 (201)
357 2ghi_A Transport protein; mult 91.3 0.087 3E-06 53.4 2.7 22 268-289 48-69 (260)
358 1aky_A Adenylate kinase; ATP:A 91.3 0.13 4.4E-06 50.1 3.8 27 266-292 4-30 (220)
359 2vli_A Antibiotic resistance p 91.3 0.093 3.2E-06 49.1 2.7 27 265-291 4-30 (183)
360 1qf9_A UMP/CMP kinase, protein 91.2 0.16 5.6E-06 47.6 4.5 27 266-292 6-32 (194)
361 3uie_A Adenylyl-sulfate kinase 91.2 0.14 4.7E-06 49.2 4.0 25 266-290 25-49 (200)
362 2ehv_A Hypothetical protein PH 91.2 0.099 3.4E-06 51.4 3.0 20 268-287 32-51 (251)
363 4a74_A DNA repair and recombin 91.2 0.11 3.8E-06 50.3 3.4 21 268-288 27-47 (231)
364 2yvu_A Probable adenylyl-sulfa 91.2 0.16 5.4E-06 48.0 4.3 26 264-289 11-36 (186)
365 1ukz_A Uridylate kinase; trans 91.2 0.16 5.3E-06 48.6 4.3 28 265-292 14-41 (203)
366 2v54_A DTMP kinase, thymidylat 91.2 0.12 4.2E-06 49.2 3.5 25 266-290 4-28 (204)
367 3lnc_A Guanylate kinase, GMP k 91.1 0.071 2.4E-06 52.5 1.8 24 267-290 28-52 (231)
368 2olj_A Amino acid ABC transpor 91.1 0.091 3.1E-06 53.4 2.7 22 268-289 52-73 (263)
369 2qt1_A Nicotinamide riboside k 91.1 0.16 5.4E-06 48.9 4.3 26 265-290 20-45 (207)
370 1jjv_A Dephospho-COA kinase; P 91.1 0.12 4.2E-06 49.6 3.5 25 267-292 3-27 (206)
371 1nn5_A Similar to deoxythymidy 91.1 0.13 4.3E-06 49.5 3.5 26 265-290 8-33 (215)
372 2qi9_C Vitamin B12 import ATP- 91.1 0.094 3.2E-06 52.8 2.7 22 268-289 28-49 (249)
373 1vpl_A ABC transporter, ATP-bi 91.0 0.094 3.2E-06 53.1 2.7 22 268-289 43-64 (256)
374 1zd8_A GTP:AMP phosphotransfer 91.0 0.14 4.8E-06 50.1 3.9 27 266-292 7-33 (227)
375 1odf_A YGR205W, hypothetical 3 91.0 0.15 5.1E-06 52.5 4.2 27 264-290 29-55 (290)
376 1nij_A Hypothetical protein YJ 91.0 0.12 4.1E-06 53.8 3.5 25 265-289 3-27 (318)
377 2ixe_A Antigen peptide transpo 90.9 0.099 3.4E-06 53.3 2.7 22 268-289 47-68 (271)
378 2yz2_A Putative ABC transporte 90.8 0.1 3.5E-06 53.0 2.7 22 268-289 35-56 (266)
379 2ihy_A ABC transporter, ATP-bi 90.8 0.1 3.5E-06 53.5 2.7 22 268-289 49-70 (279)
380 3zvl_A Bifunctional polynucleo 90.7 0.26 8.9E-06 53.3 6.0 26 265-290 257-282 (416)
381 1u0l_A Probable GTPase ENGC; p 90.7 0.12 4.1E-06 53.4 3.1 22 268-289 171-192 (301)
382 2nq2_C Hypothetical ABC transp 90.7 0.1 3.6E-06 52.6 2.6 21 268-288 33-53 (253)
383 1zak_A Adenylate kinase; ATP:A 90.5 0.16 5.3E-06 49.5 3.7 26 267-292 6-31 (222)
384 1rz3_A Hypothetical protein rb 90.4 0.19 6.5E-06 48.3 4.2 25 265-289 21-45 (201)
385 2bwj_A Adenylate kinase 5; pho 90.4 0.18 6.1E-06 47.8 3.9 27 266-292 12-38 (199)
386 3r20_A Cytidylate kinase; stru 90.4 0.16 5.6E-06 50.6 3.7 29 264-292 7-35 (233)
387 1via_A Shikimate kinase; struc 90.3 0.15 5.2E-06 47.6 3.2 25 268-292 6-30 (175)
388 2j9u_B VPS36, vacuolar protein 90.3 0.074 2.5E-06 43.0 0.9 26 50-75 17-51 (76)
389 3la6_A Tyrosine-protein kinase 90.3 0.57 1.9E-05 48.0 7.8 66 344-418 202-267 (286)
390 1sq5_A Pantothenate kinase; P- 90.3 0.19 6.6E-06 52.0 4.3 26 266-291 80-105 (308)
391 1e4v_A Adenylate kinase; trans 90.2 0.18 6.2E-06 48.8 3.8 25 268-292 2-26 (214)
392 2gza_A Type IV secretion syste 90.2 0.13 4.4E-06 54.7 2.9 22 268-289 177-198 (361)
393 3ec2_A DNA replication protein 90.2 0.14 4.7E-06 48.1 2.9 23 267-289 39-61 (180)
394 2bbs_A Cystic fibrosis transme 90.0 0.14 4.7E-06 52.9 2.8 21 268-288 66-86 (290)
395 2pt5_A Shikimate kinase, SK; a 90.0 0.19 6.6E-06 46.3 3.6 25 268-292 2-26 (168)
396 3jvv_A Twitching mobility prot 89.9 0.16 5.6E-06 53.8 3.5 22 268-289 125-146 (356)
397 3nh6_A ATP-binding cassette SU 89.9 0.087 3E-06 54.8 1.3 22 268-289 82-103 (306)
398 2pjz_A Hypothetical protein ST 89.9 0.13 4.6E-06 52.1 2.7 22 268-289 32-53 (263)
399 1vht_A Dephospho-COA kinase; s 89.9 0.19 6.3E-06 48.8 3.6 26 266-292 4-29 (218)
400 1lw7_A Transcriptional regulat 89.8 0.13 4.6E-06 54.4 2.7 25 267-291 171-195 (365)
401 3umf_A Adenylate kinase; rossm 89.8 0.27 9.1E-06 48.5 4.6 28 265-292 28-55 (217)
402 3hr8_A Protein RECA; alpha and 89.8 0.61 2.1E-05 49.5 7.7 23 267-289 62-84 (356)
403 3kta_A Chromosome segregation 89.7 0.2 7E-06 46.9 3.6 24 268-291 28-51 (182)
404 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.13 4.3E-06 54.1 2.3 22 268-289 173-194 (330)
405 3tui_C Methionine import ATP-b 89.5 0.16 5.4E-06 54.2 2.9 22 268-289 56-77 (366)
406 1gvn_B Zeta; postsegregational 89.5 0.21 7.3E-06 51.2 3.8 26 265-290 32-57 (287)
407 3io5_A Recombination and repai 89.4 1.3 4.5E-05 46.2 9.7 21 268-288 30-50 (333)
408 2iyv_A Shikimate kinase, SK; t 89.4 0.19 6.5E-06 47.2 3.1 25 268-292 4-28 (184)
409 2ewv_A Twitching motility prot 89.3 0.19 6.4E-06 53.7 3.4 23 267-289 137-159 (372)
410 3be4_A Adenylate kinase; malar 89.3 0.22 7.7E-06 48.4 3.7 26 267-292 6-31 (217)
411 2p5t_B PEZT; postsegregational 89.3 0.19 6.6E-06 50.2 3.2 27 265-291 31-57 (253)
412 3lda_A DNA repair protein RAD5 89.1 1.7 5.8E-05 46.8 10.7 20 268-287 180-199 (400)
413 2vp4_A Deoxynucleoside kinase; 89.1 0.21 7.1E-06 49.2 3.3 25 265-289 19-43 (230)
414 1zuh_A Shikimate kinase; alpha 89.0 0.24 8.3E-06 45.7 3.6 26 267-292 8-33 (168)
415 3bh0_A DNAB-like replicative h 89.0 1.1 3.8E-05 46.4 8.9 22 268-289 70-91 (315)
416 1e6c_A Shikimate kinase; phosp 89.0 0.22 7.4E-06 46.1 3.2 25 268-292 4-28 (173)
417 2kjq_A DNAA-related protein; s 88.9 0.19 6.5E-06 46.3 2.7 23 267-289 37-59 (149)
418 3fvq_A Fe(3+) IONS import ATP- 88.9 0.2 6.8E-06 53.3 3.1 22 268-289 32-53 (359)
419 3sr0_A Adenylate kinase; phosp 88.9 0.26 8.8E-06 48.1 3.7 25 268-292 2-26 (206)
420 1gtv_A TMK, thymidylate kinase 88.9 0.12 4.2E-06 49.6 1.4 22 268-289 2-23 (214)
421 2grj_A Dephospho-COA kinase; T 88.8 0.3 1E-05 47.1 4.1 29 264-292 10-38 (192)
422 1ak2_A Adenylate kinase isoenz 88.8 0.28 9.4E-06 48.3 3.9 27 266-292 16-42 (233)
423 1v5w_A DMC1, meiotic recombina 88.7 2 6.9E-05 44.9 10.8 23 267-289 123-145 (343)
424 2pbr_A DTMP kinase, thymidylat 88.7 0.23 8E-06 46.6 3.2 23 268-290 2-24 (195)
425 2ze6_A Isopentenyl transferase 88.6 0.25 8.7E-06 49.5 3.6 25 268-292 3-27 (253)
426 2xb4_A Adenylate kinase; ATP-b 88.6 0.27 9.1E-06 48.1 3.7 25 268-292 2-26 (223)
427 2z0h_A DTMP kinase, thymidylat 88.6 0.27 9.3E-06 46.3 3.7 23 268-290 2-24 (197)
428 2oap_1 GSPE-2, type II secreti 88.5 0.18 6.3E-06 56.1 2.7 22 267-288 261-282 (511)
429 2pez_A Bifunctional 3'-phospho 88.5 0.26 9E-06 46.1 3.4 24 266-289 5-28 (179)
430 1z47_A CYSA, putative ABC-tran 88.5 0.21 7.2E-06 53.0 3.0 22 268-289 43-64 (355)
431 1p9r_A General secretion pathw 88.4 0.24 8.2E-06 53.8 3.5 23 267-289 168-190 (418)
432 2z43_A DNA repair and recombin 88.4 1.7 5.8E-05 45.0 9.9 23 267-289 108-130 (324)
433 1q3t_A Cytidylate kinase; nucl 88.4 0.3 1E-05 48.1 4.0 36 263-298 13-50 (236)
434 3ake_A Cytidylate kinase; CMP 88.3 0.32 1.1E-05 46.3 3.9 25 268-292 4-28 (208)
435 2yyz_A Sugar ABC transporter, 88.3 0.22 7.5E-06 53.0 3.0 22 268-289 31-52 (359)
436 3a4m_A L-seryl-tRNA(SEC) kinas 88.3 0.26 8.8E-06 49.6 3.4 24 266-289 4-27 (260)
437 1wcv_1 SOJ, segregation protei 88.2 1.5 5E-05 43.6 8.9 66 342-418 110-182 (257)
438 3nwj_A ATSK2; P loop, shikimat 88.2 0.26 8.8E-06 49.7 3.3 26 267-292 49-74 (250)
439 4a1f_A DNAB helicase, replicat 88.1 1 3.5E-05 47.3 8.0 22 268-289 48-69 (338)
440 3ea0_A ATPase, para family; al 88.1 0.77 2.6E-05 44.9 6.7 66 343-418 118-185 (245)
441 2f6r_A COA synthase, bifunctio 88.1 0.35 1.2E-05 49.3 4.3 27 265-292 74-100 (281)
442 2it1_A 362AA long hypothetical 88.1 0.23 7.8E-06 52.9 2.9 22 268-289 31-52 (362)
443 1g29_1 MALK, maltose transport 88.0 0.23 7.9E-06 53.0 3.0 22 268-289 31-52 (372)
444 3rlf_A Maltose/maltodextrin im 87.9 0.23 8E-06 53.1 2.9 22 268-289 31-52 (381)
445 2vhj_A Ntpase P4, P4; non- hyd 87.9 0.53 1.8E-05 49.3 5.5 21 268-288 125-145 (331)
446 2cr8_A MDM4 protein; ZF-ranbp 87.9 0.41 1.4E-05 35.6 3.3 30 50-79 11-40 (53)
447 2w0m_A SSO2452; RECA, SSPF, un 87.9 0.28 9.6E-06 47.3 3.3 22 268-289 25-46 (235)
448 1v43_A Sugar-binding transport 87.8 0.24 8.3E-06 52.9 2.9 22 268-289 39-60 (372)
449 2x8a_A Nuclear valosin-contain 87.4 0.32 1.1E-05 49.5 3.4 23 269-291 47-69 (274)
450 2npi_A Protein CLP1; CLP1-PCF1 87.2 0.28 9.7E-06 53.9 3.2 23 267-289 139-161 (460)
451 3k9g_A PF-32 protein; ssgcid, 87.2 1.5 5.2E-05 43.6 8.4 66 342-417 143-209 (267)
452 2h92_A Cytidylate kinase; ross 87.1 0.33 1.1E-05 46.8 3.3 26 266-291 3-28 (219)
453 2c6a_A Ubiquitin-protein ligas 87.1 0.31 1.1E-05 35.5 2.2 30 49-78 12-41 (46)
454 3gd7_A Fusion complex of cysti 87.0 0.3 1E-05 52.5 3.1 22 268-289 49-70 (390)
455 4eaq_A DTMP kinase, thymidylat 86.9 0.48 1.6E-05 46.8 4.4 27 265-291 25-51 (229)
456 1cr0_A DNA primase/helicase; R 86.9 0.35 1.2E-05 49.3 3.4 22 268-289 37-58 (296)
457 1m7g_A Adenylylsulfate kinase; 86.8 0.44 1.5E-05 45.9 4.0 24 266-289 25-48 (211)
458 2obl_A ESCN; ATPase, hydrolase 86.7 0.37 1.3E-05 50.9 3.6 22 268-289 73-94 (347)
459 1ixz_A ATP-dependent metallopr 86.7 0.37 1.3E-05 47.8 3.4 23 268-290 51-73 (254)
460 3d31_A Sulfate/molybdate ABC t 86.6 0.21 7.1E-06 52.9 1.6 22 268-289 28-49 (348)
461 1jbk_A CLPB protein; beta barr 86.4 0.49 1.7E-05 43.6 3.9 24 266-289 43-66 (195)
462 3bfv_A CAPA1, CAPB2, membrane 86.3 0.93 3.2E-05 45.9 6.3 67 343-418 191-257 (271)
463 3cio_A ETK, tyrosine-protein k 86.0 1.3 4.6E-05 45.4 7.3 66 344-418 214-279 (299)
464 1f2t_A RAD50 ABC-ATPase; DNA d 85.8 0.42 1.4E-05 43.9 3.0 23 268-290 25-47 (149)
465 2cvh_A DNA repair and recombin 85.7 0.43 1.5E-05 45.8 3.2 21 268-288 22-42 (220)
466 1oxx_K GLCV, glucose, ABC tran 85.7 0.2 7E-06 53.0 0.9 22 268-289 33-54 (353)
467 1a7j_A Phosphoribulokinase; tr 85.7 0.26 8.9E-06 50.7 1.7 27 265-291 4-30 (290)
468 2i1q_A DNA repair and recombin 85.6 2.7 9.4E-05 43.2 9.6 23 267-289 99-121 (322)
469 1u94_A RECA protein, recombina 85.5 1.2 4E-05 47.3 6.7 23 267-289 64-86 (356)
470 1yqt_A RNAse L inhibitor; ATP- 85.3 0.4 1.4E-05 53.7 3.2 22 268-289 49-70 (538)
471 3euj_A Chromosome partition pr 85.3 0.44 1.5E-05 52.6 3.4 22 268-289 31-52 (483)
472 1n0w_A DNA repair protein RAD5 85.3 0.45 1.5E-05 46.4 3.2 21 268-288 26-46 (243)
473 3exa_A TRNA delta(2)-isopenten 85.1 0.57 2E-05 48.8 4.0 26 266-291 3-28 (322)
474 1iy2_A ATP-dependent metallopr 85.1 0.49 1.7E-05 47.8 3.4 23 268-290 75-97 (278)
475 3qf7_A RAD50; ABC-ATPase, ATPa 85.0 0.46 1.6E-05 50.5 3.3 21 269-289 26-46 (365)
476 3b60_A Lipid A export ATP-bind 84.9 0.39 1.3E-05 54.3 2.8 22 268-289 371-392 (582)
477 3b5x_A Lipid A export ATP-bind 84.8 0.42 1.4E-05 54.0 3.0 22 268-289 371-392 (582)
478 3gmt_A Adenylate kinase; ssgci 84.8 0.6 2.1E-05 46.4 3.8 28 265-292 7-34 (230)
479 3q9l_A Septum site-determining 84.7 0.98 3.3E-05 44.5 5.4 66 343-418 113-186 (260)
480 1in4_A RUVB, holliday junction 84.5 0.51 1.8E-05 49.2 3.3 24 267-290 52-75 (334)
481 1xp8_A RECA protein, recombina 84.3 0.98 3.3E-05 48.0 5.5 22 268-289 76-97 (366)
482 2dpy_A FLII, flagellum-specifi 84.2 0.55 1.9E-05 51.2 3.6 22 268-289 159-180 (438)
483 1ltq_A Polynucleotide kinase; 84.0 0.58 2E-05 47.6 3.5 23 267-289 3-25 (301)
484 1lv7_A FTSH; alpha/beta domain 84.0 0.7 2.4E-05 45.8 4.0 23 267-289 46-68 (257)
485 3j16_B RLI1P; ribosome recycli 83.8 0.51 1.8E-05 53.6 3.2 22 268-289 105-126 (608)
486 3ozx_A RNAse L inhibitor; ATP 83.7 0.46 1.6E-05 53.3 2.7 22 268-289 27-48 (538)
487 1svm_A Large T antigen; AAA+ f 83.6 0.72 2.4E-05 49.3 4.1 24 267-290 170-193 (377)
488 3crm_A TRNA delta(2)-isopenten 83.6 0.74 2.5E-05 48.1 4.1 25 267-291 6-30 (323)
489 2yl4_A ATP-binding cassette SU 83.2 0.4 1.4E-05 54.3 2.0 22 268-289 372-393 (595)
490 3qf4_B Uncharacterized ABC tra 83.2 0.42 1.4E-05 54.2 2.1 22 268-289 383-404 (598)
491 2p65_A Hypothetical protein PF 83.1 0.62 2.1E-05 42.9 2.9 24 266-289 43-66 (187)
492 2w58_A DNAI, primosome compone 83.0 0.75 2.6E-05 43.7 3.6 23 267-289 55-77 (202)
493 1yqt_A RNAse L inhibitor; ATP- 82.9 0.59 2E-05 52.3 3.2 22 268-289 314-335 (538)
494 1nlf_A Regulatory protein REPA 82.8 0.68 2.3E-05 46.7 3.4 22 267-288 31-52 (279)
495 3bos_A Putative DNA replicatio 82.8 0.78 2.7E-05 44.2 3.7 24 266-289 52-75 (242)
496 3bk7_A ABC transporter ATP-bin 82.8 0.52 1.8E-05 53.6 2.7 23 267-289 118-140 (607)
497 3d3q_A TRNA delta(2)-isopenten 82.5 0.8 2.7E-05 48.2 3.8 25 267-291 8-32 (340)
498 1p5z_B DCK, deoxycytidine kina 82.4 0.46 1.6E-05 47.6 1.9 27 264-290 22-48 (263)
499 3a8t_A Adenylate isopentenyltr 82.4 0.81 2.8E-05 48.1 3.8 25 267-291 41-65 (339)
500 3bk7_A ABC transporter ATP-bin 82.3 0.63 2.2E-05 52.9 3.2 22 268-289 384-405 (607)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.2e-68 Score=590.87 Aligned_cols=398 Identities=34% Similarity=0.639 Sum_probs=375.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+.+++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+++|.|+|.+|....|+++|+|++..+..+++.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc--cc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv--~~ 420 (666)
++.++|||||||++|..+|..++..+|++||||||..+.++.+|.. .+|+++|+.++..+++|++|+|+||||+. +|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCC-CchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 9999999999999999999999999999999999999988777764 47999999999999999899999999994 56
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCC-CCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeE
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~-~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I 499 (666)
++++++.+.+++..+++.+++... .++++++||++|.|+.++.. .++||+|++|++.|+.++++.+..++||+|+|
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~---~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v 249 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPI 249 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc---cccccCchHHHHHHHhCCCCccCCCCCeEEEE
Confidence 678888999999999999998643 57899999999999988654 48999999999999999988888899999999
Q ss_pred EeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCC
Q 005973 500 CDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 500 ~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
+++++. .|++ ++|+|.+|+|++||.|.++|++..++|++|++++.++++|.|||+|+|.|+|++..++++|+|||+++
T Consensus 250 ~~~~~~-~G~v-~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~ 327 (439)
T 3j2k_7 250 VDKYKD-MGTV-VLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPS 327 (439)
T ss_pred EEEEcC-CCeE-EEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCC
Confidence 999873 7988 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEE
Q 005973 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTS 659 (666)
Q Consensus 580 ~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ 659 (666)
.+++.++.|+|++.||+++.||..|+++.+|+|+.+++|+|.+|.+++|.+||+..+.+|++|+.|+.|.|+|++.+|||
T Consensus 328 ~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~ 407 (439)
T 3j2k_7 328 NLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC 407 (439)
T ss_pred CCCceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEE
Confidence 98888999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCC
Q 005973 660 FQYYFVC 666 (666)
Q Consensus 660 ve~~~~~ 666 (666)
+|.|++|
T Consensus 408 ~e~~~~~ 414 (439)
T 3j2k_7 408 LETFKDF 414 (439)
T ss_pred Eeecccc
Confidence 9999875
No 2
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-65 Score=586.19 Aligned_cols=393 Identities=37% Similarity=0.655 Sum_probs=304.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
..+..++|+|+||+|+|||||+++|++..+.+..+.+.++++.+...|+++|.++|++|...+|+.+|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.++.++|||||||.+|..+++.++..+|++|||||+..+.|+.++.. ..|+++|+.++..+++|++|||+||||+++|+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~-~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE-NGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCS-CSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCcccccccc-chHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 99999999999999999999999999999999999999887766632 46999999999999998899999999999888
Q ss_pred chhhhHHHHHHhhhh-hhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEE
Q 005973 422 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 500 (666)
Q Consensus 422 ~e~~~~i~~el~~~l-~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~ 500 (666)
+++++.+.+++..++ +.+++....+++|++||++|.|+.++... ..++||+|+.|+++|..+.++.+..+.||+|+|+
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~ 410 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc-ccccccchHHHHHHHHhhccccccccccchheee
Confidence 888999999999999 88888766788999999999999875432 4689999999999999888888888999999999
Q ss_pred eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccc-eeccCCceeEEeeccCcCccccccEEecCC
Q 005973 501 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCS-VARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 501 ~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~-~A~aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
++|++..|++ ++|+|.+|+|++||.|.++|.+...+|++|++++.+++ .|.|||+|+|.|+|++..++++|+|||+++
T Consensus 411 ~v~~~~~g~v-~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 411 DVYRSPRSVT-VTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp EEEEETTEEE-EEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred EEEecCCeEE-EEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCC
Confidence 9999855666 89999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEE-eCceE
Q 005973 580 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVN-QSQNT 658 (666)
Q Consensus 580 ~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~-l~~pI 658 (666)
.|+..+..|+|+++||.++.||..|+++.||+|+.+++|+| .|.. ..+..|++|++|+.|.|+|+ |.+||
T Consensus 490 ~~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~fl~~p~ 560 (592)
T 3mca_A 490 NPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRISFLDGLF 560 (592)
T ss_dssp SCCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEEESSSCE
T ss_pred CCccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEEECCCcE
Confidence 98888999999999999889999999999999999999999 8765 12457899999999999999 99999
Q ss_pred EeeeccCC
Q 005973 659 SFQYYFVC 666 (666)
Q Consensus 659 ~ve~~~~~ 666 (666)
|+|+|++|
T Consensus 561 ~~e~~~~~ 568 (592)
T 3mca_A 561 PLCLAEEC 568 (592)
T ss_dssp EECCTTTC
T ss_pred EEEeccCC
Confidence 99999986
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=2.4e-64 Score=565.29 Aligned_cols=400 Identities=32% Similarity=0.594 Sum_probs=341.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+|+|++|+|||||+++|++..+.+..+.+.++++.+...|+++|.|+|++|....++.+|+|++.....++..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..++|||||||++|..++..++..+|++|||||++.+.++.++. +..|+++|+.++..++++++|||+||||+.++++.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~-~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CC-CCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccc-hhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 99999999999999999999999999999999999988777664 35799999999999998889999999999988888
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhc----CC--CCCCCCCCcee
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLLM 497 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l----~~--~~~~~~~p~~~ 497 (666)
+++++.+++..+++.+++....++++++||++|+|+.++......++||+|++|++.|+.+ +. +.+..+.||+|
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 8899999999999988886667899999999999998865443347999999999999766 22 45667899999
Q ss_pred eEEeEeecC----CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecC--------cccceeccCCceeEEeeccC
Q 005973 498 PICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS--------QSCSVARAGDNIAVSLQGID 565 (666)
Q Consensus 498 ~I~~v~~~~----~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~--------~~v~~A~aGd~V~l~L~gid 565 (666)
+|+++|+++ .|+| ++|+|.+|+|++||.|.++|++..++|++|+++. .++++|.|||+|+|.|++++
T Consensus 270 ~v~~v~~~~~~~g~g~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~ 348 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 348 (483)
T ss_dssp EEEEEEC---CCSCCEE-EEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCC
T ss_pred EEEEEEccCCcCCCceE-EEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecc
Confidence 999999975 5777 8999999999999999999999999999999984 89999999999999999999
Q ss_pred cCccccccEEecCCC-CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCC
Q 005973 566 VSRVMSGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTA 644 (666)
Q Consensus 566 ~~~i~~G~VL~~~~~-p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~ 644 (666)
..++++|+|||+++. |+..+..|+|++.||+++.||.+|+++.||+|+.+++|+|.+|.+++|.+|++. +++|++|++
T Consensus 349 ~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~~ 427 (483)
T 3p26_A 349 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGS 427 (483)
T ss_dssp GGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCSCBCS
T ss_pred cccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCccCcCC
Confidence 999999999999988 888999999999999989999999999999999999999999999999999986 778999999
Q ss_pred CCeEEEEEEe---CceEEeeeccCC
Q 005973 645 KQSAIVEVNQ---SQNTSFQYYFVC 666 (666)
Q Consensus 645 g~~a~v~l~l---~~pI~ve~~~~~ 666 (666)
|+.|.|+|++ .+|||+|.|++|
T Consensus 428 ~~~~~v~~~~~~~~~p~~~~~~~~~ 452 (483)
T 3p26_A 428 KQRAFVEIELIEVKRWIPLLTAHEN 452 (483)
T ss_dssp SCEEEEEEEECSCSSCCEECCTTTC
T ss_pred CCEEEEEEEECCCCCcEEEEecccC
Confidence 9999999999 889999999986
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=6.9e-64 Score=557.70 Aligned_cols=398 Identities=36% Similarity=0.648 Sum_probs=370.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+++|.|++.+|....|+++|+|++..+..++..+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
+.++|||||||++|..++..++..+|++|||||+.++.++.+|+. ..|+++|+.++..+++|++|||+||||+.+++++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~-~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK-DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT-TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCc-chhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 999999999999999999999999999999999998765555543 3489999999999999889999999999977778
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCC------------cccHHHHhhhcCCCCCCC
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK------------GPCLLDAIDSLRPPPREF 491 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~------------g~~LL~~L~~l~~~~~~~ 491 (666)
+++.+.+++..+++.+++....++++++||++|.|+.++.. .++||+ +++|+++|+.+++|.+..
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~---~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~ 240 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCT
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc---cCchhhcccccccccccchHHHHHHhhccCCCcccC
Confidence 88889999999998888754457899999999999987653 379997 678999999998888888
Q ss_pred CCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccc
Q 005973 492 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 492 ~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
+.|++|+|+++|+++ .|++ ++|+|++|.|++||.|.++|.+..++|++|++++.++++|.|||+|+|.|+|++..+++
T Consensus 241 ~~p~r~~i~~v~~~~g~G~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~ 319 (458)
T 1f60_A 241 DKPLRLPLQDVYKIGGIGTV-PVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIR 319 (458)
T ss_dssp TSCCEEEEEEEEEETTTEEE-EEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCCcEEEEEEEEEeCCCcEE-EEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccC
Confidence 999999999999998 9998 89999999999999999999999999999999999999999999999999999989999
Q ss_pred cccEEecCCC-CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEE
Q 005973 571 SGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 649 (666)
Q Consensus 571 ~G~VL~~~~~-p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~ 649 (666)
+|+||++++. |+..+..|+|++.||+++.||..|+++.||+|+.+++|+|..|.+.+|.+||+.++++|++|++|+.|.
T Consensus 320 rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~ 399 (458)
T 1f60_A 320 RGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAAL 399 (458)
T ss_dssp TTCEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEE
T ss_pred ceeEEecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEE
Confidence 9999999975 788899999999999989999999999999999999999999999999999999989999999999999
Q ss_pred EEEEeCceEEeeeccCC
Q 005973 650 VEVNQSQNTSFQYYFVC 666 (666)
Q Consensus 650 v~l~l~~pI~ve~~~~~ 666 (666)
|+|+|.+|||+|.|.+|
T Consensus 400 v~~~~~~p~~~~~~~~~ 416 (458)
T 1f60_A 400 VKFVPSKPMCVEAFSEY 416 (458)
T ss_dssp EEEEESSCCCCCCTTTC
T ss_pred EEEEECCeEEEecCccC
Confidence 99999999999999864
No 5
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=4e-63 Score=548.44 Aligned_cols=398 Identities=39% Similarity=0.680 Sum_probs=360.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+++||+|+|||||+++|++..+.+..+.+.++++.+...|++++.|+|.+|...+|+++|+|++.....+++.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999999899999988888889999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc--cc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~--~~ 421 (666)
+.++|||||||.+|..++..++..+|++|||||+.++.|+..+. +..|+++|+.++..++++++|+|+||||+.+ |+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999987665443 4679999999999999988999999999987 55
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEe
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~ 501 (666)
+++++.+.+++..+++.+++....++++++||++|+|+.+.... ++||+|+.|+++|+.+++|.+...+||+++|++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc---cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 67788889999999999888665689999999999999886543 699999999999999888877778999999999
Q ss_pred EeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
+|+++ .|++ ++|+|.+|+|++||.|+++|.+...+|++|++++.++++|.|||+|+|.|+|++..++++|++|++++.
T Consensus 240 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~ 318 (435)
T 1jny_A 240 VYSISGVGTV-PVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 318 (435)
T ss_dssp EEEETTTEEE-EEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTS
T ss_pred EEEeCCCcEE-EEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCC
Confidence 99998 8988 899999999999999999999999999999999999999999999999999999899999999999988
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005973 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSF 660 (666)
Q Consensus 581 p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~v 660 (666)
++..+..|.|++.||+++.||..|+++.||+|+.+++|+|..|.+.+|.+||+..+++|.+|++|+.|.|+|+|.+|||+
T Consensus 319 ~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~ 398 (435)
T 1jny_A 319 PPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCV 398 (435)
T ss_dssp CCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEEC
T ss_pred CceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEE
Confidence 88889999999999998899999999999999999999999999999999999998999999999999999999999999
Q ss_pred eeccCC
Q 005973 661 QYYFVC 666 (666)
Q Consensus 661 e~~~~~ 666 (666)
|.|.+|
T Consensus 399 ~~~~~~ 404 (435)
T 1jny_A 399 EKYNEF 404 (435)
T ss_dssp CCTTTS
T ss_pred ecCCcC
Confidence 999864
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-63 Score=572.84 Aligned_cols=401 Identities=32% Similarity=0.590 Sum_probs=371.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+..++|+|+|++|+|||||+++|++..+.+..+.+.++++.+...|+++|.++|++|....++.+|+|++.....+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
+..++|||||||++|..++..++..+|++|||||++.+.++.+|.. ..|+.+|+.++..++++++|||+||||++++++
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~-~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCT-TSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchh-hhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 9999999999999999999999999999999999998877776653 579999999999999998999999999998878
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcC--C----CCCCCCCCce
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR--P----PPREFSKPLL 496 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~--~----~~~~~~~p~~ 496 (666)
.+++.+.+++..+++.+++....++++++||++|.|+.++......++||+|++|++.|+.+. . |.+..+.||+
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 888999999999999888866678999999999999988755444589999999999998772 2 3355788999
Q ss_pred eeEEeEeecC----CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecC--------cccceeccCCceeEEeecc
Q 005973 497 MPICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS--------QSCSVARAGDNIAVSLQGI 564 (666)
Q Consensus 497 ~~I~~v~~~~----~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~--------~~v~~A~aGd~V~l~L~gi 564 (666)
|+|+++|+++ .|+| ++|+|.+|+|++||.|+++|++..++|++|++++ .++++|.|||+|+|.|+++
T Consensus 403 ~~V~~v~~~~~~~g~g~v-~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp EECCEEECCSSSCSSSSE-EEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred hheeeeeccCccCCCeeE-EEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeec
Confidence 9999999975 5788 8999999999999999999999999999999984 8999999999999999999
Q ss_pred CcCccccccEEecCCC-CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccC
Q 005973 565 DVSRVMSGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT 643 (666)
Q Consensus 565 d~~~i~~G~VL~~~~~-p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~ 643 (666)
+..++++|+|||+++. |+..+..|+|++.||.++.||.+|+++.||+|+.+++|+|..|.+++|.+||+. +.+|++|+
T Consensus 482 ~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~ 560 (611)
T 3izq_1 482 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLG 560 (611)
T ss_dssp CTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSCSSS
T ss_pred cHhhCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCccccC
Confidence 9999999999999988 888899999999999989999999999999999999999999999999999987 78899999
Q ss_pred CCCeEEEEEEe---CceEEeeeccCC
Q 005973 644 AKQSAIVEVNQ---SQNTSFQYYFVC 666 (666)
Q Consensus 644 ~g~~a~v~l~l---~~pI~ve~~~~~ 666 (666)
+|+.|.|+|+| .+|||+|.|++|
T Consensus 561 ~~d~a~v~~~~~~~~~pi~~e~~~~~ 586 (611)
T 3izq_1 561 SKQRAFVEIELIEVKRWIPLLTAHEN 586 (611)
T ss_dssp SCCSEEEEEEESSCSSCBCCCCTTTC
T ss_pred CCCEEEEEEEECCCCCceEEeecccC
Confidence 99999999999 789999999875
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.1e-63 Score=557.35 Aligned_cols=397 Identities=37% Similarity=0.629 Sum_probs=328.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+.++.++|.+|....|+++|+|++..+..+.+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc--ccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv--~~~ 421 (666)
..++|||||||++|..++..++..+|++|||||++.+.++.+|.. .+|+++|+.++..+++|++|||+||||+. +|+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC-CCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 999999999999999999999999999999999999977777764 36999999999999998899999999994 466
Q ss_pred chhhhHHHHHHhhhhhhc-CcC-CCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeE
Q 005973 422 KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 499 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~-~~~-~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I 499 (666)
+++++.+..++..+++.+ ++. ...++++++||++|.|+.++.. ...++||.|++|++.|+.++++.+..++||+|+|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~-~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC-TTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc-cccCccccchhHHHHHHhCCCCcCCCCCCcEEEE
Confidence 788888889999999887 774 1247899999999999988653 2368999999999999999888777789999999
Q ss_pred EeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec-CcccceeccCCceeEEeeccCcCccccccEEecC
Q 005973 500 CDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (666)
Q Consensus 500 ~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~ 578 (666)
+++|+. .|++ ++|+|.+|+|++||.|.++|.+...+|++|+++ +.++++|.|||+|+|.|+| +..++++|+||+++
T Consensus 279 ~~~~~~-~G~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~ 355 (467)
T 1r5b_A 279 ASKYKD-LGTI-LEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTST 355 (467)
T ss_dssp CEEEES-SSEE-EEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECS
T ss_pred EEEEeC-CCeE-EEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCC
Confidence 999875 6988 999999999999999999999999999999998 8999999999999999999 88999999999999
Q ss_pred CCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceE
Q 005973 579 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNT 658 (666)
Q Consensus 579 ~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI 658 (666)
+.++..+..|+|++.||+++.||..|+++.||+|+.+++|+|..|.+++|. ||+..+++|++|++|+.|.|+|+|.+||
T Consensus 356 ~~~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~ 434 (467)
T 1r5b_A 356 KNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPV 434 (467)
T ss_dssp SSCCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEE
T ss_pred CCCCccceEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEE
Confidence 988899999999999999989999999999999999999999999999998 9998888999999999999999999999
Q ss_pred EeeeccCC
Q 005973 659 SFQYYFVC 666 (666)
Q Consensus 659 ~ve~~~~~ 666 (666)
|+|.|.+|
T Consensus 435 ~~~~~~~~ 442 (467)
T 1r5b_A 435 CMERFEDY 442 (467)
T ss_dssp ECCCTTTC
T ss_pred EEEEcCcC
Confidence 99999764
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=5.9e-59 Score=514.92 Aligned_cols=386 Identities=26% Similarity=0.448 Sum_probs=332.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCC--CcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~--g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
+..++|+++||+|+|||||+++|++..+.+..+.+.++.+.+...+. ..+.+++.+|...+|+++|+|++..+.++..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 35689999999999999999999999888877766666655544443 5678889999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..++|||||||++|..++..++..+|++|||||++++. ..|+.+|+.++..++++++|+|+||+|+.+++
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~--------~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--------QTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 9999999999999999999999999999999999999873 57999999999999998899999999999876
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhcCCCCCCCCCCceeeEEe
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 501 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~~~~~~~p~~~~I~~ 501 (666)
+++++.+.+++..+++.+++....++++++||++|.|+.++.. .++||.|++|++.|+.++++.+....||+++|++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~---~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~ 250 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE---RSPWYAGQSLMEILETVEIASDRNYTDLRFPVQY 250 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT---TCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc---cCccccCchHHHHHhcCCCcccCCCCCcEEEEEE
Confidence 7778888888998888887433457899999999999988764 4799999999999999988888888999999999
Q ss_pred EeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecCCC
Q 005973 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 580 (666)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~ 580 (666)
+++.. .|.. +.|+|.+|+|++||.|.++|++...+|++|++++.++++|.|||+|++.|++ ..++++|++|++++.
T Consensus 251 v~~~~~~~~g-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 251 VNRPNLNFRG-FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADN 327 (434)
T ss_dssp EECSSSSCCE-EEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTS
T ss_pred EeccCCCceE-EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCCC
Confidence 99887 6777 7999999999999999999999999999999999999999999999999874 457899999999999
Q ss_pred CcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEe
Q 005973 581 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSF 660 (666)
Q Consensus 581 p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~v 660 (666)
++..++.|+|++.|++ +.||..|++++||+|+.+++|+|..|.+.+|.+|++ ++.|.+|++|+.|.|+|+|.+|+|+
T Consensus 328 ~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p~~~ 404 (434)
T 1zun_B 328 VPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAPIAL 404 (434)
T ss_dssp CCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEEEEC
T ss_pred CCCcccEEEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECCeEEE
Confidence 8888999999999996 789999999999999999999999999999999998 4679999999999999999999999
Q ss_pred eeccCC
Q 005973 661 QYYFVC 666 (666)
Q Consensus 661 e~~~~~ 666 (666)
|+|.+|
T Consensus 405 ~~~~~~ 410 (434)
T 1zun_B 405 DGYSSN 410 (434)
T ss_dssp CCTTTC
T ss_pred cccccC
Confidence 999864
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=4e-53 Score=463.05 Aligned_cols=354 Identities=29% Similarity=0.400 Sum_probs=309.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++||+|+|||||+++|++.. ...|+..|...+.+|....|+++|+|++..+..++..+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChh---------------hhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCe
Confidence 46899999999999999999998531 112333343334578888999999999999988988889
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.++|||||||++|..++..++..+|++|||||++++. ..|+++|+.++..+++|++|+|+||||+.+ +++.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP--------MPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEM 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHH
Confidence 9999999999999999999999999999999999873 579999999999999998889999999985 3456
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc--ccHHHHhhh-cCCCCCCCCCCceeeEEe
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG--PCLLDAIDS-LRPPPREFSKPLLMPICD 501 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g--~~LL~~L~~-l~~~~~~~~~p~~~~I~~ 501 (666)
++.+.+++..+++.+++....++++++||++|.|.. .++||.| ..|+++|.. +++|.+..++||+++|++
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~-------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~ 210 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQR-------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVES 210 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTC-------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhccccc-------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEE
Confidence 677778888899888886667899999999999852 2689987 679999865 677778888999999999
Q ss_pred EeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC--ceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEecC
Q 005973 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (666)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~ 578 (666)
+|.++ .|+| ++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+|++.|+|++..++++|++|+++
T Consensus 211 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~ 289 (397)
T 1d2e_A 211 VYSIPGRGTV-VTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 289 (397)
T ss_dssp EEEETTTEEE-EEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEEST
T ss_pred EEEeCCceEE-EEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCC
Confidence 99998 9998 8999999999999999999976 789999999999999999999999999999999999999999998
Q ss_pred CCCcceeeEEEEEEEEecCC-----CCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEE
Q 005973 579 DFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVN 653 (666)
Q Consensus 579 ~~p~~~~~~F~a~i~vl~~~-----~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~ 653 (666)
+. +.....|+|++.||++. .||..|+++.+|+++..++|+|. |. .+|.+|++|+.|.|+|+
T Consensus 290 ~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~l~~~~~~~v~~~ 355 (397)
T 1d2e_A 290 GS-IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKELAMPGEDLKLTLI 355 (397)
T ss_dssp TS-CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCCBCTTCEEEEEEE
T ss_pred CC-CCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------------CCcccccCCCEEEEEEE
Confidence 84 56689999999999863 69999999999999999999997 31 13678999999999999
Q ss_pred eCceEEeeecc
Q 005973 654 QSQNTSFQYYF 664 (666)
Q Consensus 654 l~~pI~ve~~~ 664 (666)
|.+|+|+|.|.
T Consensus 356 ~~~p~~~~~~~ 366 (397)
T 1d2e_A 356 LRQPMILEKGQ 366 (397)
T ss_dssp EEEEECCCTTC
T ss_pred ECCeEEEccCC
Confidence 99999999874
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2.5e-52 Score=457.86 Aligned_cols=363 Identities=28% Similarity=0.431 Sum_probs=310.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCC-CcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK-GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~-g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
.+..++|+++||+|+|||||+++|++... ..|+ ..|...+.+|....|+.+|+|++.....++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---------------AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---------------HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---------------hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 34678999999999999999999985311 1121 2222223578888999999999999888998
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..++|||||||++|..++..++..+|++|||||++++. ..|+.+++.++..+++|++|+|+||+|+.. +
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~ 143 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP--------MPQTREHILLARQVGVPYIVVFMNKVDMVD-D 143 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC--------CHHHHHHHHHHHHTTCCCEEEEEECGGGCC-C
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCEEEEEEECccccC-c
Confidence 8999999999999999999999999999999999999873 469999999999999998899999999985 3
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCC--ccccccCCc-ccHHHHhhh-cCCCCCCCCCCcee
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD--GRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLM 497 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~--~~~~~Wy~g-~~LL~~L~~-l~~~~~~~~~p~~~ 497 (666)
++.++.+.+++..+++.+++....++++++||++|.|+.+.... ...++||.+ ..|+++|.. +++|.+..+.||+|
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~ 223 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLM 223 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEE
Confidence 45566677788888888887655689999999999986442110 013679876 678999865 67777788899999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC---ceEEEeeeeecCcccceeccCCceeEEeeccCcCcccccc
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 573 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~---~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~ 573 (666)
+|+++|+++ .|++ ++|+|.+|+|++||.|.++|.+ ...+|++|++++.++++|.|||+|++.|+|++..++++|+
T Consensus 224 ~v~~v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~ 302 (405)
T 2c78_A 224 PVEDVFTITGRGTV-ATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 302 (405)
T ss_dssp ECCEEEEETTTEEE-EEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTC
T ss_pred EEEEEEEcCCCceE-EEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceE
Confidence 999999998 9998 8999999999999999999988 5899999999999999999999999999999999999999
Q ss_pred EEecCCCCcceeeEEEEEEEEecCC-----CCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeE
Q 005973 574 VLCHPDFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSA 648 (666)
Q Consensus 574 VL~~~~~p~~~~~~F~a~i~vl~~~-----~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a 648 (666)
+||+++. +.....|+|++.||++. .||..|+++.+|+++.+++|+|. |. .++.+|++|+.|
T Consensus 303 ~l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------------~~~~~l~~~~~~ 368 (405)
T 2c78_A 303 VLAKPGS-ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------------PGVEMVMPGDNV 368 (405)
T ss_dssp EEESTTS-SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------TTCCCBCTTCEE
T ss_pred EEEcCCC-CceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------------cCccccCCCCEE
Confidence 9999884 66789999999999843 79999999999999999999997 31 136689999999
Q ss_pred EEEEEeCceEEeeecc
Q 005973 649 IVEVNQSQNTSFQYYF 664 (666)
Q Consensus 649 ~v~l~l~~pI~ve~~~ 664 (666)
.|+|+|.+|+|+|.|.
T Consensus 369 ~v~~~~~~p~~~~~~~ 384 (405)
T 2c78_A 369 TFTVELIKPVALEEGL 384 (405)
T ss_dssp EEEEEEEEEEEECTTC
T ss_pred EEEEEECceEEEccCC
Confidence 9999999999999874
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1e-50 Score=454.15 Aligned_cols=348 Identities=24% Similarity=0.364 Sum_probs=291.1
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE
Q 005973 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 260 ~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~ 339 (666)
....++.++|+++||+|+|||||+++|++... .+.+|....++++|+|++..+..+
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~------------------------~~~~d~~~~e~~~GiTi~~~~~~~ 68 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIAS------------------------TSAHDKLPESQKRGITIDIGFSAF 68 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEE
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCc------------------------ccccccccccccCccEEecceEEE
Confidence 34456789999999999999999999984310 134677788999999999999889
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.+.+..++|||||||++|..++..++..+|++|||||++++ +++|+.+++.++..+++| +|+|+||||+.+
T Consensus 69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~ip-~IvviNK~Dl~~ 139 (482)
T 1wb1_A 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG--------PKTQTGEHMLILDHFNIP-IIVVITKSDNAG 139 (482)
T ss_dssp EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-BCEEEECTTSSC
T ss_pred EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCccc
Confidence 98999999999999999999999999999999999999987 467999999999999999 599999999984
Q ss_pred ccchhhhHHHHHHhhhhhhc-CcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCC--CCCCCCCc
Q 005973 420 YSKDRFDSIKVQLGTFLRSC-GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP--PREFSKPL 495 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~-~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~--~~~~~~p~ 495 (666)
+++++.+.+++..+++.. ++. .++++++||++|+|+.+ |+++|.. ++.+ .+..+.||
T Consensus 140 --~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~---------------L~~~L~~~i~~~~~~~~~~~~~ 200 (482)
T 1wb1_A 140 --TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDE---------------LKNLIITTLNNAEIIRNTESYF 200 (482)
T ss_dssp --HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHH---------------HHHHHHHHHHHSCCCCCSSSCC
T ss_pred --chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHH---------------HHHHHHHhhcCccccccccccc
Confidence 556777888888888776 663 46899999999999965 7777754 2223 56677899
Q ss_pred eeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccE
Q 005973 496 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 574 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~V 574 (666)
+++|+++|..+ .|+| ++|+|.+|.|++||.|.++|.+...+|++|++++.++++|.|||+|++.|+|++..++++|++
T Consensus 201 ~~~v~~v~~~~g~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdv 279 (482)
T 1wb1_A 201 KMPLDHAFPIKGAGTV-VTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXI 279 (482)
T ss_dssp BCBCSCEECCSSCCCE-ECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCB
T ss_pred cccceeEEEecCCceE-EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccce
Confidence 99999999988 9999 899999999999999999999999999999999999999999999999999999899999999
Q ss_pred E-ecCCCCcceeeEEEEEEEEecC-CCCccCCCEEEEEEeeceEEEEEEEEE-EeeccCcCcccccCCcccCCCCeEEEE
Q 005973 575 L-CHPDFPVAIATHLELKVLVLDF-APPILIGSQLECHIHHAKEAARIVKIT-SLLDTKTGKVTKKSPRCLTAKQSAIVE 651 (666)
Q Consensus 575 L-~~~~~p~~~~~~F~a~i~vl~~-~~pi~~G~~~~l~i~~~~~~a~I~~i~-~~lD~~tg~~~k~~p~~L~~g~~a~v~ 651 (666)
| +.++ ++..+..|+|++.|+++ +.||..|++++||+|+.+++|+|..+. ..+|.+|++.. +.+|++|+.|.|+
T Consensus 280 l~~~~~-~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~---~~~l~~g~~~~v~ 355 (482)
T 1wb1_A 280 LTSKDT-KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENII---LNEVISGNEXYXA 355 (482)
T ss_dssp CCCTTC-CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEE---CCSSCCSSCCCEE
T ss_pred EecCCC-CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEecccccccccccc---chhhcCCCEEEEE
Confidence 9 6655 55668999999999985 589999999999999999999999998 89998886533 5789999999999
Q ss_pred EEeCceEEeeecc
Q 005973 652 VNQSQNTSFQYYF 664 (666)
Q Consensus 652 l~l~~pI~ve~~~ 664 (666)
|+|.+|||+|.+.
T Consensus 356 l~~~~pv~~~~~~ 368 (482)
T 1wb1_A 356 FELEEKVLAEVGD 368 (482)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEcCccEEecCCC
Confidence 9999999999764
No 12
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.2e-48 Score=462.64 Aligned_cols=356 Identities=28% Similarity=0.418 Sum_probs=293.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
..+..++|+++||+|+|||||+++|++.. ...|+..+...+.+|....|+++|+|++.....++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~---------------~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVL---------------AKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHH---------------HHHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhh---------------ccccccccccccccccccccccCceeEEEEEEEEcC
Confidence 45677999999999999999999998531 112222222223578888999999999998888888
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..++|||||||++|..++..++..+|++|||||++++. ..|+++|+.++..+++|++|||+||||+.+ +
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv--------~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d 427 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLGRQVGVPYIIVFLNKCDMVD-D 427 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS--------CTTHHHHHHHHHHHTCSCEEEEEECCTTCC-C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC--------cHHHHHHHHHHHHcCCCeEEEEEeeccccc-c
Confidence 8999999999999999999999999999999999999874 468999999999999998899999999985 3
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCc-ccHHHHhhh-cCCCCCCCCCCceeeE
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 499 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g-~~LL~~L~~-l~~~~~~~~~p~~~~I 499 (666)
+++++.+.+++..+++.+++....++++++||++|.+- ..+||.| ..|+++|.. +++|.+..++||+++|
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng--------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pI 499 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG--------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPI 499 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC--------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEEC
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC--------CccccccchhhHhHHhhhcCCCccccccceeeec
Confidence 45567777888899988888666789999999999542 1468876 578999865 6667777789999999
Q ss_pred EeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCC--ceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEEe
Q 005973 500 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 576 (666)
Q Consensus 500 ~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~ 576 (666)
+++|.++ .|+| ++|+|.+|+|++||.|.++|.+ ..++|++|++++.++++|.|||+|+|.|+|++..++++|+||+
T Consensus 500 d~Vf~i~G~GtV-vtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 500 EDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CEEEEETTTEEE-EEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred cccccccCCcEE-EEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 9999998 9998 8999999999999999999988 6899999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEEecC-----CCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEE
Q 005973 577 HPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVE 651 (666)
Q Consensus 577 ~~~~p~~~~~~F~a~i~vl~~-----~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~ 651 (666)
+++. +.....|.|++.||.+ ..||..|+++.+|+++..++|+|. | . .++.+|++|+.|.|+
T Consensus 579 ~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L---~---------~~~~~L~~Gd~a~V~ 644 (1289)
T 3avx_A 579 KPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-L---P---------EGVEMVMPGDNIKMV 644 (1289)
T ss_dssp STTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-C---C---------TTCCCBCTTCCCEEE
T ss_pred cCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-E---C---------CCcccccCCCEEEEE
Confidence 9886 4668999999999974 469999999999999999999996 2 1 236789999999999
Q ss_pred EEeCceEEeeecc
Q 005973 652 VNQSQNTSFQYYF 664 (666)
Q Consensus 652 l~l~~pI~ve~~~ 664 (666)
|+|.+|+|+|.|.
T Consensus 645 L~l~~Pi~ve~g~ 657 (1289)
T 3avx_A 645 VTLIHPIAMDDGL 657 (1289)
T ss_dssp EEEEEEEECCTTC
T ss_pred EEECceEEEccCC
Confidence 9999999999874
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=7e-49 Score=425.24 Aligned_cols=316 Identities=19% Similarity=0.254 Sum_probs=273.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
+|+++||+|+|||||+++|+ ++|+|++..+..+++.++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 89999999999999999997 368999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe-ccccccccchhhh
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFD 426 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN-K~Dlv~~~~e~~~ 426 (666)
|||||||++|..+++.+++.+|++||||| ..+ +..|+++++.++..+++|.+|+|+| |||+ + .+.++
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g--------~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~ 131 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQG--------LDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAID 131 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC--------CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC--------CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHH
Confidence 99999999999999999999999999999 776 4679999999999999995589999 9999 3 44556
Q ss_pred HHHHHHhhhhhhcCcCCCCCcEEE--eeccc---CCCcccCCCCccccccCCcccHHHHhhhcCCC----CCC-CCCCce
Q 005973 427 SIKVQLGTFLRSCGFKDASLTWIP--LSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP----PRE-FSKPLL 496 (666)
Q Consensus 427 ~i~~el~~~l~~~~~~~~~i~iIp--vSA~t---G~nI~e~~~~~~~~~Wy~g~~LL~~L~~l~~~----~~~-~~~p~~ 496 (666)
.+.+++..+++..++ ..+++++ +||++ |+|+.+ |++.|....++ ... ...|++
T Consensus 132 ~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~---------------L~~~l~~~~~~~~~~~~~~~~~p~r 194 (370)
T 2elf_A 132 ELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDE---------------LKARINEVAEKIEAENAELNSLPAR 194 (370)
T ss_dssp HHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHH---------------HHHHHHHHHHHHHHHHHHGGGSCCE
T ss_pred HHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHH---------------HHHHHHhhccccccCCccccccccc
Confidence 667788888877665 3578999 99999 999865 66665333211 112 445678
Q ss_pred eeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccccccEE
Q 005973 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 497 ~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
++|+++|+++ .|++ ++|+|++|+|++||+|+++|.+...+|++|++++.++++|.|||+|++.|+|++..++++|++|
T Consensus 195 ~~v~~vf~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl 273 (370)
T 2elf_A 195 IFIDHAFNVTGKGCV-VLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFII 273 (370)
T ss_dssp EEEEEEECCC---CE-EEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEE
T ss_pred ccceeEEEcCCCceE-EEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEE
Confidence 8899999998 9999 8999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ecCCCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeC
Q 005973 576 CHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQS 655 (666)
Q Consensus 576 ~~~~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~ 655 (666)
++ .+ ..+..|+|++.|++++.||..|+++.||+|+.+++|+|..|.. |.. ++ ..+.+|+.|.|+|+|.
T Consensus 274 ~~--~~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~ 341 (370)
T 2elf_A 274 SD--KE-IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGN 341 (370)
T ss_dssp ES--CC-EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEE
T ss_pred EC--CC-ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEEC
Confidence 98 45 7889999999999988999999999999999999999998854 432 22 1356999999999999
Q ss_pred ceEEeeecc
Q 005973 656 QNTSFQYYF 664 (666)
Q Consensus 656 ~pI~ve~~~ 664 (666)
+|+|+|.|.
T Consensus 342 ~pi~~~~~~ 350 (370)
T 2elf_A 342 KKLAYSKQD 350 (370)
T ss_dssp EEEEECTTS
T ss_pred cEEEEeCCC
Confidence 999999885
No 14
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4.9e-47 Score=416.26 Aligned_cols=324 Identities=26% Similarity=0.366 Sum_probs=261.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
+..++|+++||+|+|||||+++|++. ..+....|+++|+|++..+..+..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~~ 57 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV----------------------------WTDRHSEELRRGISIRLGYADCEIRK 57 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC----------------------------CCCC-------CCCCCCEEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC----------------------------ccccCcccccCCcEEEeccccccccc
Confidence 35789999999999999999999832 234566778899999877654332
Q ss_pred -------------C--------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH
Q 005973 342 -------------K--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (666)
Q Consensus 342 -------------~--------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll 400 (666)
. ...++|||||||++|..+++.++..+|++|||||++++. .+.|+.+|+.++
T Consensus 58 ~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~ 130 (408)
T 1s0u_A 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMAL 130 (408)
T ss_dssp CTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHHH
Confidence 1 168999999999999999999999999999999999862 257999999999
Q ss_pred HHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHH
Q 005973 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDA 480 (666)
Q Consensus 401 ~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~ 480 (666)
..++++++|+|+||+|+.+.. +.....+++..+++.... ..++++++||++|+|+.+ |+++
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~--~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~---------------L~~~ 191 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEK--QAEENYEQIKEFVKGTIA--ENAPIIPISAHHEANIDV---------------LLKA 191 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTT--TTTTHHHHHHHHHTTSTT--TTCCEEEC------CHHH---------------HHHH
T ss_pred HHcCCCeEEEEEEccCCCCHH--HHHHHHHHHHHHHhhcCC--CCCeEEEeeCCCCCCHHH---------------HHHH
Confidence 999987799999999998643 222233455556554322 357899999999999954 9999
Q ss_pred hhh-cCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc------------eEEE
Q 005973 481 IDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------VGTV 538 (666)
Q Consensus 481 L~~-l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~------------~~~V 538 (666)
|.. ++.+.++.++|++++|+++|.+. .|+| ++|+|.+|+|++||.|.++|++. ..+|
T Consensus 192 l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v 270 (408)
T 1s0u_A 192 IQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGV-LGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKI 270 (408)
T ss_dssp HHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCE-EEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred HHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeE-EEEEEEECeEecCCEEEEcCCcccccccccccccceeEE
Confidence 865 77777888999999999999653 4778 89999999999999999999642 6899
Q ss_pred eeeeecCcccceeccCCceeEEee---ccCcCccccccEEecCCCCcceeeEEEEEEEEecCC---------CCccCCCE
Q 005973 539 HSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA---------PPILIGSQ 606 (666)
Q Consensus 539 ksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~~---------~pi~~G~~ 606 (666)
++|++++.++++|.|||+|+|.++ +++..++++|+|||+++.+++..+.|+|++.||++. .||..|++
T Consensus 271 ~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~ 350 (408)
T 1s0u_A 271 VSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEV 350 (408)
T ss_dssp CEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCE
T ss_pred EEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCE
Confidence 999999999999999999999987 677889999999999999888899999999999874 89999999
Q ss_pred EEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeecc
Q 005973 607 LECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYYF 664 (666)
Q Consensus 607 ~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~~ 664 (666)
+.||+|+.+++|+|..|.. + .|+|+|.+|+|+|.+.
T Consensus 351 ~~~~~~t~~~~~~v~~~~~--------------------~--~~~~~~~~p~~~~~~~ 386 (408)
T 1s0u_A 351 LMLNIGTATTAGVITSARG--------------------D--IADIKLKLPICAEIGD 386 (408)
T ss_dssp EEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTTC
T ss_pred EEEEEcCCEEEEEEEEecC--------------------C--EEEEEECCcEEecCCC
Confidence 9999999999999987631 2 7888899999999875
No 15
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=9.8e-47 Score=414.12 Aligned_cols=324 Identities=27% Similarity=0.366 Sum_probs=272.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
+..++|+++||+|+|||||+++|++. ..+...+|+++|+|++..+..+...
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~~ 59 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELRRGITIKIGFADAEIRR 59 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC----------------------------CCC--CGGGGSCSSSCCEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC----------------------------ccccChhhhcCCcEEEEeeeeeeccc
Confidence 45789999999999999999999832 2355677888999998776654331
Q ss_pred ----------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH
Q 005973 343 ----------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 400 (666)
Q Consensus 343 ----------------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll 400 (666)
...++|||||||++|..+++.++..+|++||||||+++. .+.|+.+|+.++
T Consensus 60 ~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~ 132 (410)
T 1kk1_A 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMAL 132 (410)
T ss_dssp CTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHH
Confidence 168999999999999999999999999999999999862 257999999999
Q ss_pred HHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHH
Q 005973 401 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDA 480 (666)
Q Consensus 401 ~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~ 480 (666)
..++++++|+|+||||+.+. ++.....+++..+++.... ..++++++||++|.|+.+ |+++
T Consensus 133 ~~~~~~~iivviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~---------------L~~~ 193 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVA--ENAPIIPISALHGANIDV---------------LVKA 193 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHHH
T ss_pred HHcCCCcEEEEEECccCCCH--HHHHHHHHHHHHHHHhcCc--CCCeEEEeeCCCCCCHHH---------------HHHH
Confidence 99999879999999999853 2333344556666654322 357899999999999954 9999
Q ss_pred hhh-cCCCCCCCCCCceeeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc------------eEEE
Q 005973 481 IDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------VGTV 538 (666)
Q Consensus 481 L~~-l~~~~~~~~~p~~~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~------------~~~V 538 (666)
|.. ++.+.++.+.|++++|+++|.+. .|++ ++|+|.+|+|++||.|.++|++. ..+|
T Consensus 194 l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v 272 (410)
T 1kk1_A 194 IEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGV-LDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEI 272 (410)
T ss_dssp HHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCE-EEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEE-EEEEEEeCeEeeCCEEEECCCCccccccccccccceeEE
Confidence 965 77777778899999999998653 5778 89999999999999999999752 5799
Q ss_pred eeeeecCcccceeccCCceeEEee---ccCcCccccccEEecCCCCcceeeEEEEEEEEecCC---------CCccCCCE
Q 005973 539 HSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA---------PPILIGSQ 606 (666)
Q Consensus 539 ksI~~~~~~v~~A~aGd~V~l~L~---gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~~---------~pi~~G~~ 606 (666)
++|++++.++++|.|||+|++.++ ++...++.+|+|||+++.+++..+.|+|++.||++. .||..|++
T Consensus 273 ~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~ 352 (410)
T 1kk1_A 273 VSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEV 352 (410)
T ss_dssp EEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCE
T ss_pred EEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCE
Confidence 999999999999999999999986 566678999999999999888899999999999874 89999999
Q ss_pred EEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeeecc
Q 005973 607 LECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQYYF 664 (666)
Q Consensus 607 ~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~~~ 664 (666)
+.||+|+.+++|+|..|.. + .|+|+|.+|+|++.+.
T Consensus 353 ~~~~~~t~~~~~~v~~~~~--------------------~--~~~l~~~~p~~~~~~~ 388 (410)
T 1kk1_A 353 LLLNVGTARTMGLVTGLGK--------------------D--EIEVKLQIPVCAEPGD 388 (410)
T ss_dssp EEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTTC
T ss_pred EEEEEcCCEEeEEEEEecC--------------------C--EEEEEeCCcEEecCCC
Confidence 9999999999999987631 2 7888899999999875
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=8.2e-45 Score=398.02 Aligned_cols=335 Identities=22% Similarity=0.310 Sum_probs=262.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE---
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 339 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--- 339 (666)
.+..++|+++|++|+|||||+++|++....... .+..............++++.+.....+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----------------GYAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----------------EEEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccccccc----------------Cccccceeeccccccccceeccccccccccc
Confidence 456789999999999999999999853211000 0000000000011111222221110000
Q ss_pred --ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 340 --DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 340 --~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
......++|||||||++|..++..++..+|++|||||+..+. ...|+.+|+.++..++++++|+|+||+|+
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 012268999999999999999999999999999999999873 24799999999999998779999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCCCCCCCCCce
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLL 496 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~~~~~p~~ 496 (666)
++. +......+++..+++..+. ..++++++||++|.|+.+ |+++|.. ++.+.+..++|++
T Consensus 142 ~~~--~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~---------------L~~~l~~~l~~~~~~~~~~~~ 202 (403)
T 3sjy_A 142 VSK--EEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDS---------------LIEGIEEYIKTPYRDLSQKPV 202 (403)
T ss_dssp SCH--HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCE
T ss_pred cch--HHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHH---------------HHHHHHHhCCCCCCCCCCCcE
Confidence 853 3444555666666665544 357899999999999954 9999865 7777788889999
Q ss_pred eeEEeEeecC---------CCeEEEEEEEEeeeEeeCcEEEEcCCCc------------eEEEeeeeecCcccceeccCC
Q 005973 497 MPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------VGTVHSIERDSQSCSVARAGD 555 (666)
Q Consensus 497 ~~I~~v~~~~---------~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~------------~~~VksI~~~~~~v~~A~aGd 555 (666)
++|.++|.+. .|+| ++|+|.+|+|++||+|.++|++. ..+|++|++++.++++|.|||
T Consensus 203 ~~v~~~~~v~~~~~~~~~~~G~v-~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 203 MLVIRSFDVNKPGTQFNELKGGV-IGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEEEECCCCTTCCSSSCCCCE-EEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEEEEeecCCCcccccCcCcE-EEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 9999988643 5788 89999999999999999999875 579999999999999999999
Q ss_pred ceeEEee---ccCcCccccccEEecCCCCcceeeEEEEEEEEecC---------CCCccCCCEEEEEEeeceEEEEEEEE
Q 005973 556 NIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPILIGSQLECHIHHAKEAARIVKI 623 (666)
Q Consensus 556 ~V~l~L~---gid~~~i~~G~VL~~~~~p~~~~~~F~a~i~vl~~---------~~pi~~G~~~~l~i~~~~~~a~I~~i 623 (666)
+|+|.|+ ++...++.+|+|||+++.+++.+..|+|++.||++ ..||..|+++.||+|+.+++|+|..+
T Consensus 282 ~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~ 361 (403)
T 3sjy_A 282 LVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV 361 (403)
T ss_dssp CEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe
Confidence 9999986 67778999999999999988889999999999986 68999999999999999999999866
Q ss_pred EEeeccCcCcccccCCcccCCCCeEEEEEEeCceEEeee
Q 005973 624 TSLLDTKTGKVTKKSPRCLTAKQSAIVEVNQSQNTSFQY 662 (666)
Q Consensus 624 ~~~lD~~tg~~~k~~p~~L~~g~~a~v~l~l~~pI~ve~ 662 (666)
.. + .++|+|.+|+|++.
T Consensus 362 ~~--------------------~--~~~~~l~~p~~~~~ 378 (403)
T 3sjy_A 362 KK--------------------D--EIEVELRRPVAVWS 378 (403)
T ss_dssp CS--------------------S--EEEEEEEEEEECCS
T ss_pred cC--------------------c--eEEEEeCCcEeecc
Confidence 21 1 47777778888753
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.8e-34 Score=326.92 Aligned_cols=280 Identities=24% Similarity=0.299 Sum_probs=206.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
+..+.+||+|+||+|||||||+.+|++..|.|.....- ..+ ...-...+|..+.|++||||+......+.+
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V-------~~~--~~~~~~~~D~~~~EreRGITI~s~~~~~~~ 97 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSV-------KAR--KAARHATSDWMAMERERGISVTTSVMQFPY 97 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHH-------HHC----------------------CTTTEEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCccccccee-------ecC--ccccccccCChHHHHHCCCcEeeceEEEEE
Confidence 34467899999999999999999999998887543210 011 111124689999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
+++.|+|||||||.+|...+.++++.+|+||+||||..| ++.||+..+.++...++| +|++|||||+...+
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMRATP-VMTFVNKMDREALH 168 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHhCCc-eEEEEecccchhcc
Confidence 999999999999999999999999999999999999998 578999999999999999 89999999997654
Q ss_pred chhhhHHHHHHhhhhhh---------------------------------------------------------------
Q 005973 422 KDRFDSIKVQLGTFLRS--------------------------------------------------------------- 438 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~--------------------------------------------------------------- 438 (666)
..+ +.+++...|..
T Consensus 169 ~~~---~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
T 3vqt_A 169 PLD---VMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLR 245 (548)
T ss_dssp HHH---HHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHH
T ss_pred hhH---hhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhh
Confidence 322 22232222210
Q ss_pred --------cC--------cCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCC---------CCC
Q 005973 439 --------CG--------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR---------EFS 492 (666)
Q Consensus 439 --------~~--------~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~---------~~~ 492 (666)
.+ .....+|++..||++|.|+.. ||++| ..+|.|.. +.+
T Consensus 246 ~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~---------------LLd~iv~~~PsP~~~~~~~~~~~~~~ 310 (548)
T 3vqt_A 246 MDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVRE---------------MLDMFVEFAPGPQPRPAATRVVEPGE 310 (548)
T ss_dssp HHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCSCCEEBSSSEECTTC
T ss_pred hHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHH---------------HHHHHHHhCCCCCCccccccccCCCC
Confidence 00 011235788889999999954 99998 45555532 236
Q ss_pred CCceeeEEeEeec---C-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeecc
Q 005973 493 KPLLMPICDVLKS---Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGI 564 (666)
Q Consensus 493 ~p~~~~I~~v~~~---~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi 564 (666)
.||...|+++... + .|.+ +++||.+|+|+.|+.|+....+...+|..+... ..++++|.|||+|+|. |+
T Consensus 311 ~p~~a~vfKi~~~~~~~~~Grl-a~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl 387 (548)
T 3vqt_A 311 EAFTGVVFKIQANMDKAHRDRM-AFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP--NH 387 (548)
T ss_dssp SSCEEEEEEEECC-------CE-EEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE--CS
T ss_pred cCceEEEEEEEccCCcCCCCeE-EEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEec--CC
Confidence 7899999988765 4 8998 899999999999999999988888898888753 4689999999999987 65
Q ss_pred CcCccccccEEecCCCCc
Q 005973 565 DVSRVMSGGVLCHPDFPV 582 (666)
Q Consensus 565 d~~~i~~G~VL~~~~~p~ 582 (666)
.++..|++||+.+.+.
T Consensus 388 --~~~~~GDTl~~~~~~~ 403 (548)
T 3vqt_A 388 --GTIKIGDTFTESKEVL 403 (548)
T ss_dssp --SCCCTTCEEESSSSCC
T ss_pred --ccCccCCEecCCCCcc
Confidence 5688999999876543
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=7.1e-34 Score=323.61 Aligned_cols=267 Identities=30% Similarity=0.426 Sum_probs=201.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..+||+|+||+|||||||+++|++..+.+....+. .+.+|....|+++|+|+......+.+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~----------------~~~~D~~~~ErerGITI~~~~~~~~~~~~ 68 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR----------------EQLLDTLDVERERGITVKMQAVRMFYKAK 68 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEECT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCccccccc----------------ccccccchhhhcccceeeeeEEEEEEEcC
Confidence 46899999999999999999999887776544321 356888999999999997655554432
Q ss_pred ---CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 343 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ---~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.+.++|||||||.+|...+.++++.+|++|||||++++ ...|+.+++.++...++| +|+|+||||+..
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g--------v~~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG--------IEAQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB--------CCHHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 37899999999999999999999999999999999988 357999999999999999 999999999986
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceee
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~ 498 (666)
.+ .+.+.+++...+ ++. ..+++++||++|.|+.+ ||++| ..+++|..+.+.||++.
T Consensus 140 a~---~~~v~~el~~~l---g~~--~~~vi~vSAktg~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~l 196 (600)
T 2ywe_A 140 AD---VDRVKKQIEEVL---GLD--PEEAILASAKEGIGIEE---------------ILEAIVNRIPPPKGDPQKPLKAL 196 (600)
T ss_dssp CC---HHHHHHHHHHTS---CCC--GGGCEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCEEE
T ss_pred cC---HHHHHHHHHHhh---CCC--cccEEEEEeecCCCchH---------------HHHHHHHhcccccccccCCccee
Confidence 43 333444444433 442 13579999999999965 88887 66777777788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec---CcccceeccCCceeEEeecc-CcCcccccc
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 573 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~~G~ 573 (666)
|++++..+ .|.+ ++|+|.+|+|++||.|+++|.+...+|+.|... ..++++|.|||++.+. .|+ +..++++|+
T Consensus 197 V~~~~~d~~~G~v-~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 197 IFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEETTTEEE-EEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred EEEEeecccceEE-EEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 99999888 8888 899999999999999999999998899888864 3678999999976664 566 467899999
Q ss_pred EEecCCCC
Q 005973 574 VLCHPDFP 581 (666)
Q Consensus 574 VL~~~~~p 581 (666)
+||.++.|
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99998765
No 19
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.1e-32 Score=314.17 Aligned_cols=267 Identities=25% Similarity=0.393 Sum_probs=197.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..+||+|+||+|||||||+++|++..+.+....+. .+.+|....|+++|+|+......+.+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~----------------~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME----------------AQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc----------------ccccccchhhhcccceeeeeEEEEEEecC
Confidence 46899999999999999999999887776544321 356788999999999998777666543
Q ss_pred ---CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 343 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ---~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.+.++|||||||.+|...+.+++..+|++|||||++++. ..|+.+++..+...++| +|+|+||+|+..
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv--------~~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV--------EAQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC--------CTHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 478999999999999999999999999999999999873 56999999999999998 999999999986
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceee
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 498 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~ 498 (666)
.+ .+.+.+++...+ ++.. .+++++||++|.|+.+ |+++| ..++.|..+.+.|+++.
T Consensus 138 a~---~~~v~~ei~~~l---g~~~--~~vi~vSAktg~GI~~---------------Ll~~I~~~lp~p~~~~~~p~~al 194 (599)
T 3cb4_D 138 AD---PERVAEEIEDIV---GIDA--TDAVRCSAKTGVGVQD---------------VLERLVRDIPPPEGDPEGPLQAL 194 (599)
T ss_dssp CC---HHHHHHHHHHHT---CCCC--TTCEEECTTTCTTHHH---------------HHHHHHHHSCCCCCCTTSCCEEE
T ss_pred cc---HHHHHHHHHHHh---CCCc--ceEEEeecccCCCchh---------------HHHHHhhcCCCccccccCCceee
Confidence 43 333444444443 4422 3579999999999965 88887 56777777788999999
Q ss_pred EEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec---CcccceeccCCceeEEeecc-CcCcccccc
Q 005973 499 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 573 (666)
Q Consensus 499 I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-d~~~i~~G~ 573 (666)
|++++..+ .|.+ +.|+|.+|+|+.||.+.++|.+...+|..|... ..+++.+.|||++.+ +.|+ +..++.+|+
T Consensus 195 I~d~~~d~~~G~v-~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GD 272 (599)
T 3cb4_D 195 IIDSWFDNYLGVV-SLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGD 272 (599)
T ss_dssp EEEEEEETTTEEE-EEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTC
T ss_pred eeeccccccccEE-EEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCC
Confidence 99999888 8988 899999999999999999999998889888764 467899999996555 4566 467889999
Q ss_pred EEecCCCC
Q 005973 574 VLCHPDFP 581 (666)
Q Consensus 574 VL~~~~~p 581 (666)
+|++++.|
T Consensus 273 tl~~~~~~ 280 (599)
T 3cb4_D 273 TLTLARNP 280 (599)
T ss_dssp EEEESSSC
T ss_pred EeeecCCc
Confidence 99997765
No 20
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=272.30 Aligned_cols=174 Identities=24% Similarity=0.467 Sum_probs=164.8
Q ss_pred CCCCceeeEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecCcccceeccCCceeEEeeccCcCccc
Q 005973 491 FSKPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 491 ~~~p~~~~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
.++||+|+|+++|+ ..|++ ++|+|++|.|++||.|.++|++..++|++|++++.++++|.|||+|+|.|+|++..++.
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v-~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~ 80 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTV-VLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEIL 80 (204)
T ss_dssp ----CBEEEEEEEE-SSSEE-EEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCC
T ss_pred CCCCEEEEEEEEEc-CCCEE-EEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCc
Confidence 46899999999998 58998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEecCCCCcceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeeccCcCcccccCCcccCCCCeEEE
Q 005973 571 SGGVLCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 650 (666)
Q Consensus 571 ~G~VL~~~~~p~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~~tg~~~k~~p~~L~~g~~a~v 650 (666)
+|+|||+++.++..+..|+|++.||+++.||..|+++.||+|+.+++|+|.+|.+++|.+||+.++++|++|++|+.|.|
T Consensus 81 rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v 160 (204)
T 3e1y_E 81 PGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIA 160 (204)
T ss_dssp TTCEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEE
T ss_pred cceEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEE
Confidence 99999999988888999999999999888999999999999999999999999999999999998889999999999999
Q ss_pred EEEeCceEEeeeccCC
Q 005973 651 EVNQSQNTSFQYYFVC 666 (666)
Q Consensus 651 ~l~l~~pI~ve~~~~~ 666 (666)
+|++.+|||+|.|++|
T Consensus 161 ~l~~~~pi~~e~~~~~ 176 (204)
T 3e1y_E 161 RLRTAGTICLETFKDF 176 (204)
T ss_dssp EEEESSCCCCCCTTSS
T ss_pred EEEECCeEEEEEcccC
Confidence 9999999999999875
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.98 E-value=2.8e-33 Score=326.91 Aligned_cols=275 Identities=28% Similarity=0.362 Sum_probs=198.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
.+.+||+|+||++||||||+.+|++..|.+....- ..+ + ..++|....|++||||+......+.+.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~--------v~~-~----~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGE--------VHD-G----AATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCce--------ecC-C----CccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 35789999999999999999999988776532110 000 1 236899999999999998887777653
Q ss_pred ------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 343 ------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
++.|+|||||||.+|...+.++++.+|+||+||||.+| ++.||+..+.++...++| +|+++||||
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~~lp-~i~~iNKiD 148 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKYGVP-RIVYVNKMD 148 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHHTCC-EEEEEECSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHcCCC-eEEEEcccc
Confidence 68999999999999999999999999999999999999 578999999999999999 899999999
Q ss_pred cccccchhhhHHHHHHhhhhh-----------------------------------------------------------
Q 005973 417 AVQYSKDRFDSIKVQLGTFLR----------------------------------------------------------- 437 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~----------------------------------------------------------- 437 (666)
+...+.. .+.+++...+.
T Consensus 149 r~~a~~~---~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 225 (709)
T 4fn5_A 149 RQGANFL---RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSM 225 (709)
T ss_dssp STTCCHH---HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHH
T ss_pred ccCccHH---HHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHH
Confidence 8643321 12222221110
Q ss_pred -------------------------------hcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcC
Q 005973 438 -------------------------------SCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLR 485 (666)
Q Consensus 438 -------------------------------~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~ 485 (666)
..-.....+|++..||+++.|+. .||++| ..+|
T Consensus 226 ~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~---------------~lLd~i~~~lP 290 (709)
T 4fn5_A 226 VEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVP---------------LVLDAVIDYLP 290 (709)
T ss_dssp HHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHH---------------HHHHHHHHHSC
T ss_pred HHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchH---------------HHHHHHHhhCC
Confidence 00001123467778888888884 489998 5566
Q ss_pred CCC--------------------CCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee-
Q 005973 486 PPP--------------------REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER- 543 (666)
Q Consensus 486 ~~~--------------------~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~- 543 (666)
.|. .+.+.||.+.|+++...+ .|.+ +++||.+|+|++||+|+....++..+|..|..
T Consensus 291 sP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~l-a~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~ 369 (709)
T 4fn5_A 291 APTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTL-TFARVYSGVLSSGDSVLNSVKGKKERVGRMVQM 369 (709)
T ss_dssp CTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCC-CEEEEEESCEETTCBCBCTTTCCCCBCCCEECC
T ss_pred CCcccccccccCCccccccccccCCccCcceEEEEEeecccCCCce-EEEeccCCCCCCCCEEEEecCCcEEeecceeEe
Confidence 552 345689999999999888 8988 89999999999999999887777777777754
Q ss_pred ---cCcccceeccCCceeEEeeccCcCccccccEEecCCCCcc
Q 005973 544 ---DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVA 583 (666)
Q Consensus 544 ---~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~ 583 (666)
...++++|.||++|+|. |+ .++..|++||+.+.+..
T Consensus 370 ~g~~~~~v~~~~aGdIv~i~--Gl--~~~~~gdTl~~~~~~~~ 408 (709)
T 4fn5_A 370 HANQREEIKEVRAGDIAALI--GM--KDVTTGDTLCSIEKPII 408 (709)
T ss_dssp CSSCCCEESEECTTCEEEEC--SC--SSCCTTCEEECSSSCCB
T ss_pred ecceeeEeeeecCCCeeeec--CC--CcCccCCEecCCCcccc
Confidence 35789999999999886 77 46889999999876543
No 22
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.98 E-value=2.8e-31 Score=308.70 Aligned_cols=333 Identities=25% Similarity=0.272 Sum_probs=210.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+||+|||||||+++|++..+.+....- . . . -...+|....|+++|+|+......+.+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~--v------~-~----~~~~~d~~~~E~~~giTi~~~~~~~~~~~ 76 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE--V------H-E----GAATMDFMEQERERGITITAAVTTCFWKD 76 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEETT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce--e------c-C----CceeccCchhhhhcccccccceEEEEECC
Confidence 46789999999999999999999977665432210 0 0 0 12457888889999999998888888899
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
+.++|||||||.+|...+..++..+|++|+|||+..+. ..++..++..+...++| +|+|+||+|+...+
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~--------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV--------EPQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc--------chhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 99999999999999999999999999999999999873 56888888888899999 89999999997532
Q ss_pred hhhHHHHHHhhhhhhc--------------------------Cc------------------------------------
Q 005973 424 RFDSIKVQLGTFLRSC--------------------------GF------------------------------------ 441 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~--------------------------~~------------------------------------ 441 (666)
+..+.+++...+... -|
T Consensus 146 -~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~d 224 (691)
T 1dar_A 146 -LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFD 224 (691)
T ss_dssp -HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 223333333332110 00
Q ss_pred ---------------------------CCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhh-hcCCCCC----
Q 005973 442 ---------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---- 489 (666)
Q Consensus 442 ---------------------------~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~-~l~~~~~---- 489 (666)
....+|+++.||++|.|+.. ||++|. .+|+|..
T Consensus 225 d~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 225 ENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL---------------LLDAVVDYLPSPLDIPPI 289 (691)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHH---------------HHHHHHHHSCCTTTSCCE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHH---------------HHHHHHHhCCChhhcccc
Confidence 00125788889999999844 999984 4555543
Q ss_pred --------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----Ccccce
Q 005973 490 --------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSV 550 (666)
Q Consensus 490 --------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~ 550 (666)
+.+.||.+.|++++..+ .|.+ ++|||.+|+|+.||+|+..+.+...+|..|... ..++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~ 368 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEE 368 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEE-EEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcE-EEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcce
Confidence 25679999999999998 8998 899999999999999999988888888888653 468999
Q ss_pred eccCCceeEEeeccCcCccccccEEecCCCC-cceeeEEEEEEEEecCCCCccCCCEEEEEEeeceEEEEEEEEEEeecc
Q 005973 551 ARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP-VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDT 629 (666)
Q Consensus 551 A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p-~~~~~~F~a~i~vl~~~~pi~~G~~~~l~i~~~~~~a~I~~i~~~lD~ 629 (666)
|.|||+|+|. |+ .++..|++||+.+.+ ..........+++.-...|...+....|.-+..+..-....+....|.
T Consensus 369 ~~aGdI~~i~--gl--~~~~~Gdtl~~~~~~~~~l~~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~ 444 (691)
T 1dar_A 369 LKAGDLGAVV--GL--KETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHP 444 (691)
T ss_dssp EETTCEEEEE--CC--SSCCTTCEEEETTCCCCBCC--------------------------------CCCCSCEEEC--
T ss_pred ecCCCEEEEe--Cc--ccCccCCEEecCCCcccccCCCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcC
Confidence 9999999997 76 456789999997765 322211112344443445666666666666655555555555555555
Q ss_pred CcCcccccCCcc
Q 005973 630 KTGKVTKKSPRC 641 (666)
Q Consensus 630 ~tg~~~k~~p~~ 641 (666)
.||+.+..+...
T Consensus 445 et~e~i~~g~Ge 456 (691)
T 1dar_A 445 ETGQTIISGMGE 456 (691)
T ss_dssp ---CEEEEESCC
T ss_pred CCCcEEEEeCCH
Confidence 666555444333
No 23
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.97 E-value=1.4e-31 Score=311.61 Aligned_cols=273 Identities=27% Similarity=0.337 Sum_probs=215.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+||+|||||||+++|++..+.+.... ....+ ..++|....|+++|+|+......+.+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g---------~v~~g----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG---------EVHDG----AATMDWMEQEQERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc---------ccCCC----ceeecChhhHHhcCceeeeceEEEEECC
Confidence 4568999999999999999999997766554321 00011 2467888889999999998888887776
Q ss_pred -------eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 344 -------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 344 -------~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
+.++|||||||.+|...+.++++.+|++|+|||++.+ ...|+.+++..+...++| +|+|+||+|
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred ccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 8999999999999999999999999999999999987 356889999999889999 899999999
Q ss_pred cccccchhhhHHHHHHhhhhhhc--------------------------Cc-----------------------------
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSC--------------------------GF----------------------------- 441 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~--------------------------~~----------------------------- 441 (666)
+...+ +..+.+++...+... -|
T Consensus 146 ~~~~~---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 222 (704)
T 2rdo_7 146 RMGAN---FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNL 222 (704)
T ss_pred ccccc---HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHH
Confidence 97543 223333333332110 00
Q ss_pred -----------------------------------CCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhh-hcC
Q 005973 442 -----------------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLR 485 (666)
Q Consensus 442 -----------------------------------~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~-~l~ 485 (666)
....+|++..||++|.|+. .||++|. .+|
T Consensus 223 ~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~i~~~lP 287 (704)
T 2rdo_7 223 IESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ---------------AMLDAVIDYLP 287 (704)
T ss_pred HHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHH---------------HHHHHHHHHCC
Confidence 0012567888999999884 4999984 455
Q ss_pred CCCC--------------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec
Q 005973 486 PPPR--------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD 544 (666)
Q Consensus 486 ~~~~--------------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~ 544 (666)
+|.. +.+.||.+.|++++..+ .|.+ ++|||.+|+|+.||+|+..+.+...+|..|...
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~ 366 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNL-TFFRVYSGVVNSGDTVLNSVKAARERFGRIVQM 366 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceE-EEEEEEeeeecCCCEEEeCCCCcEEEeceEEEE
Confidence 5532 14679999999999998 8998 899999999999999999998888899988753
Q ss_pred ----CcccceeccCCceeEEeeccCcCccccccEEecCCCC
Q 005973 545 ----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (666)
Q Consensus 545 ----~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p 581 (666)
..++++|.|||+|+|. |+ .+++.|++||+++.+
T Consensus 367 ~g~~~~~v~~~~aGdIv~i~--gl--~~~~~GdTl~~~~~~ 403 (704)
T 2rdo_7 367 HANKREEIKEVRAGDIAAAI--GL--KDVTTGDTLCDPDAP 403 (704)
T ss_pred eCCCceEcceeCCCCEEEEe--Cc--ccCccCCEEeCCCcc
Confidence 5789999999999997 76 457899999987654
No 24
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.97 E-value=4.5e-31 Score=297.74 Aligned_cols=277 Identities=24% Similarity=0.306 Sum_probs=211.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+|+||+|||||||+++|++..+.+.....- ..++ .......|....++.+|+|+......+.+.++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 82 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTI--------KSRK-AARHATSDWMELEKQRGISVTTSVMQFPYKDY 82 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHH--------HTC-----CCHHHHHHHHHHHCCSSSSSEEEEEETTE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceee--------eccc-cccceecccchhhhcCCeeEEEeEEEEEeCCE
Confidence 46899999999999999999999887776332210 0000 00122456777888899999998899999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch-
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD- 423 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e- 423 (666)
.++|||||||.+|...+..+++.+|++|+|||+..+ ...++..++..+...++| +|+|+||+|+...+..
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g--------~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~~ 153 (528)
T 3tr5_A 83 LINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG--------VEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSIE 153 (528)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHHH
T ss_pred EEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHHH
Confidence 999999999999999999999999999999999987 357899999999999998 9999999999753321
Q ss_pred hhhHHHHHHhhhhhhc----------------------------------------------------------------
Q 005973 424 RFDSIKVQLGTFLRSC---------------------------------------------------------------- 439 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~---------------------------------------------------------------- 439 (666)
.++++.+.+.......
T Consensus 154 ~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~ 233 (528)
T 3tr5_A 154 LLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELV 233 (528)
T ss_dssp HHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchh
Confidence 1223332221100000
Q ss_pred -----------CcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCCCCC---------CCCCceee
Q 005973 440 -----------GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPLLMP 498 (666)
Q Consensus 440 -----------~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~~---------~~~p~~~~ 498 (666)
-.....+|++++||++|.|+.+ ||++|.. +|+|... .+.||...
T Consensus 234 ~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~---------------Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~ 298 (528)
T 3tr5_A 234 KGASHPFEREGYLKGELTPIFFGSAINNFGVGE---------------LLDAFVKEAPPPQGRETNSRLVKPEEEKFSGF 298 (528)
T ss_dssp HHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEE
T ss_pred hhhhhHHHHHHHhcCceeEEEeccccCCccHHH---------------HHHHHHHhCCCCCcccccceeeCCCcccceeE
Confidence 0001123789999999999955 9999854 4444321 25789999
Q ss_pred EEeEee--cC--CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee----cCcccceeccCCceeEEeeccCcCccc
Q 005973 499 ICDVLK--SQ--HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 499 I~~v~~--~~--~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
|+++.. .+ +|++ +++||.+|+|+.||.|++.+.++..+|.++.. .+.++++|.|||+|+|. ++ .+++
T Consensus 299 VFKi~~~~dp~~~g~l-~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~l--~~~~ 373 (528)
T 3tr5_A 299 VFKIQANMDPGHRDRI-AFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLH--NH--GTIQ 373 (528)
T ss_dssp EEEEEECCC-CCCCEE-EEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEE--ES--SSCC
T ss_pred EEEEecccCccCCceE-EEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEc--CC--CCCc
Confidence 999874 33 6988 89999999999999999999999999999876 36789999999998886 54 5678
Q ss_pred cccEEecCC
Q 005973 571 SGGVLCHPD 579 (666)
Q Consensus 571 ~G~VL~~~~ 579 (666)
.|++||...
T Consensus 374 ~GDtl~~~~ 382 (528)
T 3tr5_A 374 IGDTFTQGE 382 (528)
T ss_dssp TTCEEESSC
T ss_pred cCCEEcCCC
Confidence 999999843
No 25
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.97 E-value=4.1e-35 Score=338.23 Aligned_cols=275 Identities=24% Similarity=0.329 Sum_probs=216.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+++||+|+||+|||||||+.+|++..|.+.+..- ...+ ...+|..+.|++||||+..+...|.++++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~---------v~~g----~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGS---------VDKG----TTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSS---------CCCS----CCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccc---------cccC----CcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 3678999999999999999999999988765320 0011 24689999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.|+|||||||.+|...+.++++.+|+||+||||.+| ++.||+.++.++...++| +|+++||||+...+...
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G--------V~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG--------VQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLST 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT--------TCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSHH
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-eEEEEeccccccCCHHH
Confidence 999999999999999999999999999999999998 578999999999999999 68899999997654322
Q ss_pred -hhHHHHHHh--------------------------------------hhhhhcCc--------------CCCCCcEEEe
Q 005973 425 -FDSIKVQLG--------------------------------------TFLRSCGF--------------KDASLTWIPL 451 (666)
Q Consensus 425 -~~~i~~el~--------------------------------------~~l~~~~~--------------~~~~i~iIpv 451 (666)
++++.+.+. .++....+ ....+|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 122211110 00000000 0123577888
Q ss_pred ecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCCCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEE
Q 005973 452 SALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLV 529 (666)
Q Consensus 452 SA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v 529 (666)
||++|.|+.. ||++| ..+++|......||.+.|+++...+ .|.+ +++||.+|+|+.||.|++
T Consensus 219 Sa~~~~Gv~~---------------LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~l-a~~RV~sG~l~~g~~v~~ 282 (638)
T 3j25_A 219 SAKSNIGIDN---------------LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRL-AYIRLYSGVLHLRDSVRV 282 (638)
T ss_dssp CSTTCCSHHH---------------HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCC-CBCCBSSBCCCSCCCSSS
T ss_pred ccccCCCchh---------------HhhhhhccccCcccchhhhhcceeeeeeeeccCceE-EEEEEEcCcccCCCcccc
Confidence 9999999954 99998 5567777777889999999999888 8988 899999999999999987
Q ss_pred cCCCceEEEeeeee----cCcccceeccCCceeEEeeccCcCccccccEEecCCCCcc
Q 005973 530 LPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVA 583 (666)
Q Consensus 530 ~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p~~ 583 (666)
...+ ..+|..+.. ...++++|.|||+|+|. | ..++.|+++++...++.
T Consensus 283 ~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g---~~~~~~~tl~d~~~~~~ 334 (638)
T 3j25_A 283 SEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQ--N---EFLKLNSVLGDTKLLPQ 334 (638)
T ss_dssp CCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCC--S---SSCSSEECSSSSSSGGG
T ss_pred ccCc-ceeEEeeecccccccccccccccceEEEEe--c---cccccCceecCCCCccc
Confidence 6554 346655553 25689999999999875 4 34677899988765543
No 26
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.97 E-value=1.7e-30 Score=293.32 Aligned_cols=274 Identities=21% Similarity=0.272 Sum_probs=188.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+|+||+|||||||+++|++..+.+...... .++... ....+|....|+.+|+|+......+.+.++
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v--------~~~~~~-~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~ 82 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTV--------KGRGSN-QHAKSDWMEMEKQRGISITTSVMQFPYHDC 82 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETTE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCcccccee--------ecCccc-cceeeccchhcccCCcceeeeEEEEEECCe
Confidence 46899999999999999999999766655321100 000000 013567778899999999988888899999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.++|||||||.+|...+.+++..+|++|+|||+..+ ...|+.+++.++...++| +|+|+||+|+...+.
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g--------~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-- 151 (529)
T 2h5e_A 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG--------VEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-- 151 (529)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--
T ss_pred EEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc--------chHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--
Confidence 999999999999999999999999999999999987 357899999999889999 999999999975432
Q ss_pred hhHHHHHHhhhhhhcCc---------------------------------------------------------------
Q 005973 425 FDSIKVQLGTFLRSCGF--------------------------------------------------------------- 441 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~--------------------------------------------------------------- 441 (666)
.++.+++...+.....
T Consensus 152 -~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~ 230 (529)
T 2h5e_A 152 -MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDE 230 (529)
T ss_dssp -HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcc
Confidence 1223333332211000
Q ss_pred -----------------CCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhc-CCCCCC---------CCCC
Q 005973 442 -----------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL-RPPPRE---------FSKP 494 (666)
Q Consensus 442 -----------------~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l-~~~~~~---------~~~p 494 (666)
....+|+++.||++|.|+ ..||++|..+ |+|... .+.|
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv---------------~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~ 295 (529)
T 2h5e_A 231 LELVKGASNEFDKELFLAGEITPVFFGTALGNFGV---------------DHMLDGLVEWAPAPMPRQTDTRTVEASEDK 295 (529)
T ss_dssp HHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSH---------------HHHHHHHHHHSCSSCCEEBSSCEECTTCCS
T ss_pred cchhhhhhhhhhHHHHHhCceeEEEeeecccCCCH---------------HHHHHHHHHhCCCCCcccccccccCCCCCC
Confidence 001124555555555555 3499998654 444321 1468
Q ss_pred ceeeEEeEee---cC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCc
Q 005973 495 LLMPICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDV 566 (666)
Q Consensus 495 ~~~~I~~v~~---~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~ 566 (666)
|...|+++.. .+ .|++ ++|||.+|+|++||+|++.|.++..+|.+|+.. +.++++|.|||+|+|. ++
T Consensus 296 ~~~~vfKi~~~~d~~~~G~i-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~l-- 370 (529)
T 2h5e_A 296 FTGFVFKIQANMDPKHRDRV-AFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLH--NH-- 370 (529)
T ss_dssp CEEEEEEECSSCCSSSSCCC-EEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEEC--CS--
T ss_pred eEEEEEEEeeccCcCCCceE-EEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEe--cc--
Confidence 8888888754 33 7998 899999999999999999999999999999864 6789999999999886 54
Q ss_pred CccccccEEecCC
Q 005973 567 SRVMSGGVLCHPD 579 (666)
Q Consensus 567 ~~i~~G~VL~~~~ 579 (666)
.+++.|++||+++
T Consensus 371 ~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 371 GTIQIGDTFTQGE 383 (529)
T ss_dssp SCCCTTCEEESSC
T ss_pred CCCccCCEeecCC
Confidence 5678899999876
No 27
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=2.4e-32 Score=307.37 Aligned_cols=253 Identities=21% Similarity=0.286 Sum_probs=200.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-CC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~ 343 (666)
+.++|+|+||+|+|||||+++|++... .....+|+|.+.....+.. .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 467899999999999999999985311 1112357777766666665 56
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..++|||||||++|..++..++..+|++|||||+..+ .+.|+.+++.++...++| +|+|+||+|+.+.+..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPE 122 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCC
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEecccccccchH
Confidence 7899999999999999999999999999999999987 467999999999999999 9999999999865544
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh---cCCCCCCCCCCceeeEE
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLLMPIC 500 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~---l~~~~~~~~~p~~~~I~ 500 (666)
.+......+...+..++ ..++++++||++|.|+.+ |++.|.. .+.+..+.+.|++++|.
T Consensus 123 ~v~~~l~~~~~~~e~~~---~~~~iv~vSAktG~GI~e---------------Lle~I~~l~~~~~~~~~~~~~~~~~V~ 184 (537)
T 3izy_P 123 KVKKELLAYDVVCEDYG---GDVQAVHVSALTGENMMA---------------LAEATIALAEMLELKADPTGAVEGTVI 184 (537)
T ss_dssp SSSSHHHHTTSCCCCSS---SSEEECCCCSSSSCSSHH---------------HHHHHHHHHTTCCCCCCSSSSEEEEEE
T ss_pred HHHHHHHhhhhhHHhcC---CCceEEEEECCCCCCchh---------------HHHHHHHhhhcccccCCCCCCcceeEE
Confidence 43322222222222222 246899999999999966 6666633 33445566789999999
Q ss_pred eEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeecC-cccceeccCCceeEEeeccCcCccccccEEecC
Q 005973 501 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS-QSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (666)
Q Consensus 501 ~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~~-~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~ 578 (666)
+++..+ .|++ ++|+|.+|+|++||.|.. .....+|++|+.++ .++++|.||++|+|. |++ ....+|++|+.+
T Consensus 185 e~~~~~g~G~V-~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~ 258 (537)
T 3izy_P 185 ESFTDKGRGPV-TTAIIQRGTLRKGSILVA--GKSWAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEV 258 (537)
T ss_dssp EECCCTTCCCC-EEEEEEEECCSSEEEECC--SSCCEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSC
T ss_pred EEEEeCCCceE-EEEEEecCEEEcCCEEEe--CCceEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEec
Confidence 999998 9998 899999999999998854 34568999999875 799999999999886 775 335899999998
Q ss_pred CCC
Q 005973 579 DFP 581 (666)
Q Consensus 579 ~~p 581 (666)
+++
T Consensus 259 ~~~ 261 (537)
T 3izy_P 259 ESE 261 (537)
T ss_dssp CSS
T ss_pred CCh
Confidence 654
No 28
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=2.7e-31 Score=296.53 Aligned_cols=252 Identities=25% Similarity=0.274 Sum_probs=197.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+|+||+|+|||||+++|+.... .....+|+|++.....+.+++.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-------------------------------~~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-------------------------------ASGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-------------------------------SBTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-------------------------------ccccCCCeeEeEEEEEEEECCE
Confidence 568899999999999999999984210 1112368888877777888888
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.++|||||||++|..++.+++..+|++|||||+.++ .++|+.+++.++..+++| +|+|+||+|+..++.++
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g--------~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~~ 122 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG--------VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPDR 122 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB--------SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCCC
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC--------ccHHHHHHHHHHHhcCce-EEEEEEeccccccCHHH
Confidence 999999999999999999999999999999999987 357999999999999999 99999999998654433
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh---cCCCCCCCCCCceeeEEe
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLLMPICD 501 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~---l~~~~~~~~~p~~~~I~~ 501 (666)
+.....+...+...++ ..++++++||++|.|+.+ |++.|.. ++.+....+.|++++|.+
T Consensus 123 v~~~l~~~~~~~~~~~---~~~~~v~vSAktG~gI~e---------------Lle~I~~~~~~~~~~~~~~~~~~~~V~e 184 (501)
T 1zo1_I 123 VKNELSQYGILPEEWG---GESQFVHVSAKAGTGIDE---------------LLDAILLQAEVLELKAVRKGMASGAVIE 184 (501)
T ss_dssp TTCCCCCCCCCTTCCS---SSCEEEECCTTTCTTCTT---------------HHHHTTTTCCCSTTTSCCCSBCEEEEEE
T ss_pred HHHHHHHhhhhHHHhC---CCccEEEEeeeeccCcch---------------hhhhhhhhhhhhccccccccccccceEE
Confidence 2110000000111111 246899999999999965 8888743 233344557889999999
Q ss_pred EeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeee-cCcccceeccCCceeEEeeccCcCccccccEEecCC
Q 005973 502 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 579 (666)
Q Consensus 502 v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~ 579 (666)
++..+ .|.+ ++|+|.+|+|++||.|++++ ...+|++|+. ++..+++|.||++|.+. |++ .....|++++...
T Consensus 185 ~~~d~g~G~v-~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 185 SFLDKGRGPV-ATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEECSSSSEE-EEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEEeCCcEEE-EEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 99988 8988 89999999999999999875 4679999986 46789999999999876 664 2247899998754
Q ss_pred C
Q 005973 580 F 580 (666)
Q Consensus 580 ~ 580 (666)
.
T Consensus 259 ~ 259 (501)
T 1zo1_I 259 D 259 (501)
T ss_dssp S
T ss_pred C
Confidence 4
No 29
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=1.4e-30 Score=302.96 Aligned_cols=273 Identities=26% Similarity=0.347 Sum_probs=198.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+||+|+|||||+++|++..+.+....- .. . -...+|....|+++|+|+......+.+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~--------v~-~----~~~~~D~~~~e~~~giTi~~~~~~~~~~~ 74 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE--------TH-E----GASQMDWMEQEQDRGITITSAATTAAWEG 74 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc--------cc-C----CceecccchhhhhcCceEeeeeEEEEECC
Confidence 35689999999999999999999977665532210 00 0 02456778888899999998888888899
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..++|||||||.+|...+..+++.+|++|+|||+..+ ...++..++..+...++| +|+|+||+|+...+
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g--------~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG--------VEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999987 356888888888889999 89999999998532
Q ss_pred hhhHHHHHHhhhhhhc--------------------------CcC-----------------------------------
Q 005973 424 RFDSIKVQLGTFLRSC--------------------------GFK----------------------------------- 442 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~--------------------------~~~----------------------------------- 442 (666)
+..+.+++...+... -|.
T Consensus 144 -~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~d 222 (693)
T 2xex_A 144 -FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETS 222 (693)
T ss_dssp -HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 222333333332110 000
Q ss_pred ----------------------------CCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHh-hhcCCCCC----
Q 005973 443 ----------------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR---- 489 (666)
Q Consensus 443 ----------------------------~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L-~~l~~~~~---- 489 (666)
..-+|++..||++|.|+. .||++| ..+|+|..
T Consensus 223 d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~---------------~LLd~i~~~lPsP~~~~~~ 287 (693)
T 2xex_A 223 DELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQ---------------LMLDAVIDYLPSPLDVKPI 287 (693)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHH---------------HHHHHHHHHSCCGGGSCCE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHH---------------HHHHHHHHHCCCchhcccc
Confidence 011467778888888874 499998 45555532
Q ss_pred ----------------CCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----Cccc
Q 005973 490 ----------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSC 548 (666)
Q Consensus 490 ----------------~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v 548 (666)
+.+.||.+.|++++..+ .|.+ ++|||.+|+|+.||+|+....+...+|..|... ..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 366 (693)
T 2xex_A 288 IGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366 (693)
T ss_dssp EEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEE-EEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEEC
T ss_pred cccCCCccccceeecCCCCCceEEEEEEeeecCCCceE-EEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEc
Confidence 25679999999999998 8988 899999999999999999888888899888653 4689
Q ss_pred ceeccCCceeEEeeccCcCccccccEEecCCCC
Q 005973 549 SVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (666)
Q Consensus 549 ~~A~aGd~V~l~L~gid~~~i~~G~VL~~~~~p 581 (666)
++|.|||+|+|. |+ .+++.|++||+.+.+
T Consensus 367 ~~~~aGdI~~i~--gl--~~~~~GdTl~~~~~~ 395 (693)
T 2xex_A 367 DTVYSGDIAAAV--GL--KDTGTGDTLCGEKND 395 (693)
T ss_dssp SEEETTCEEEEE--SC--SSCCTTCEEEETTCC
T ss_pred cccCcCCEEEEe--Cc--ccCccCCEEecCCCc
Confidence 999999999997 76 456789999987654
No 30
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.96 E-value=2.4e-30 Score=299.87 Aligned_cols=269 Identities=23% Similarity=0.255 Sum_probs=210.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+..+|+|+||+|+|||||+++|++..+.+.... .. ..-...+|....++.+|+|+......+.+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G--~V-----------~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~ 74 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG--RV-----------EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH 74 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC--CG-----------GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc--ee-----------cCCcccccCCHHHHhcCCeEEecceEEeeCCE
Confidence 467899999999999999999997765442211 00 01123566777788899999888888888899
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.++|||||||.+|...+..+++.+|++|+|+|+..+ +..|+.+++..+...++| +|+|+||+|+. ..
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g--------~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~--- 141 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLP-RMVVVTKLDKG-GD--- 141 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC---
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc--------cchhHHHHHHHHHHccCC-EEEEecCCchh-hh---
Confidence 999999999999999999999999999999999887 457899999999999999 89999999987 32
Q ss_pred hhHHHHHHhhhhh-------------------------------------------------------------------
Q 005973 425 FDSIKVQLGTFLR------------------------------------------------------------------- 437 (666)
Q Consensus 425 ~~~i~~el~~~l~------------------------------------------------------------------- 437 (666)
+..+.+++...+.
T Consensus 142 ~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e 221 (665)
T 2dy1_A 142 YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLE 221 (665)
T ss_dssp HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2223333333221
Q ss_pred ----hcC--------------cCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhh-cCCCCCC-CCCCcee
Q 005973 438 ----SCG--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE-FSKPLLM 497 (666)
Q Consensus 438 ----~~~--------------~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~-l~~~~~~-~~~p~~~ 497 (666)
... .....+|++++||++|.|+.+ ||++|.. +|+|... .+.||.+
T Consensus 222 ~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~---------------Ll~~i~~~lp~p~~~~~~~p~~~ 286 (665)
T 2dy1_A 222 KYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLP---------------LLELILEALPSPTERFGDGPPLA 286 (665)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------------HHHHHHHHSCCHHHHHCSCSCEE
T ss_pred HHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHH---------------HHHHHHHhCCCccccCCCCCeEE
Confidence 000 000125788999999999854 9999854 5555432 5789999
Q ss_pred eEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCceEEEeeeeec----CcccceeccCCceeEEeeccCcCccccc
Q 005973 498 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 498 ~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
.|++++..+ .|.+ ++|||.+|+|++||+|++.+ ...+|.+|... ..++++|.|||+|+|. |++ ++++|
T Consensus 287 ~V~k~~~d~~~G~~-~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl~--~~~~G 359 (665)
T 2dy1_A 287 KVFKVQVDPFMGQV-AYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KAE--GLHRG 359 (665)
T ss_dssp EEEEEEEETTTEEE-EEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEES--SCT--TCCTT
T ss_pred EEEEEEEcCCCCeE-EEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--CCc--cCccC
Confidence 999999988 8988 89999999999999999887 66788888753 4689999999999996 664 67899
Q ss_pred cEEecCCCC
Q 005973 573 GVLCHPDFP 581 (666)
Q Consensus 573 ~VL~~~~~p 581 (666)
++||+++.+
T Consensus 360 dtl~~~~~~ 368 (665)
T 2dy1_A 360 MVLWQGEKP 368 (665)
T ss_dssp CEEESSSCC
T ss_pred CEEecCCCc
Confidence 999997664
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=4.1e-29 Score=285.02 Aligned_cols=258 Identities=25% Similarity=0.350 Sum_probs=187.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe---
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--- 340 (666)
++.++|+|+||+|||||||+++|++....- ...+|+|.+.....+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~-------------------------------~e~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVAS-------------------------------REAGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSC-------------------------------C----CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCcc-------------------------------ccCCceecccCeEEEeech
Confidence 357899999999999999999998531100 0002344333322222
Q ss_pred ---------------cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCC
Q 005973 341 ---------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (666)
Q Consensus 341 ---------------~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi 405 (666)
.....++|||||||.+|...+.+++..+|++|||||+++| +++|+.+++.+++..++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G--------v~~qT~e~l~~l~~~~v 123 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRT 123 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCC
Confidence 1223699999999999998888889999999999999987 46899999999999999
Q ss_pred CcEEEEEecccccc-ccc------------------hhhhHHHHHHhhhhhhcCcC----------CCCCcEEEeecccC
Q 005973 406 DQLIVAVNKMDAVQ-YSK------------------DRFDSIKVQLGTFLRSCGFK----------DASLTWIPLSALEN 456 (666)
Q Consensus 406 p~iIVViNK~Dlv~-~~~------------------e~~~~i~~el~~~l~~~~~~----------~~~i~iIpvSA~tG 456 (666)
| +|+|+||||+.. |.. +.+.+...++...+...++. ...++++++||++|
T Consensus 124 P-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 124 P-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp C-EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred e-EEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 9 999999999974 321 11222223333344333332 13468999999999
Q ss_pred CCcccCCCCccccccCCcccHHHHhhhc----CC--CCCCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEE
Q 005973 457 QNLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLV 529 (666)
Q Consensus 457 ~nI~e~~~~~~~~~Wy~g~~LL~~L~~l----~~--~~~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v 529 (666)
.|+.+ |+++|..+ .. ...+.+.|+++.|++++..+ .|.+ ++|+|.+|+|++||.|++
T Consensus 203 ~GI~e---------------Ll~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v-~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 203 EGIPE---------------LLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMT-IDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp TTHHH---------------HHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEE-EEEEEEESEEETTCEEEE
T ss_pred CCchh---------------HHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEE-EEEEEeeCEEeeCCEEEE
Confidence 99965 66666332 11 12245789999999999998 8988 899999999999999999
Q ss_pred cCCCc--eEEEeeeeec------------Ccccceec--cCCceeEEeeccCcCccccccEEecCCCC
Q 005973 530 LPSGE--VGTVHSIERD------------SQSCSVAR--AGDNIAVSLQGIDVSRVMSGGVLCHPDFP 581 (666)
Q Consensus 530 ~P~~~--~~~VksI~~~------------~~~v~~A~--aGd~V~l~L~gid~~~i~~G~VL~~~~~p 581 (666)
+|.+. ..+|++|... ..++++|. +|+.|++ .|+ .++..|++|+....+
T Consensus 267 ~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~l--~~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 267 MTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PGI--DDVMAGSPLRVVTDP 330 (594)
T ss_dssp EBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--SSC--TTBCTTCEEEECSSH
T ss_pred CCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--ccc--CCCCCCCEEEecCCH
Confidence 99876 4589999753 34677888 6666554 244 456889999987654
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.95 E-value=3.3e-28 Score=288.45 Aligned_cols=289 Identities=24% Similarity=0.329 Sum_probs=194.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..+||+|+||+|||||||+++|++..+.+..... + -..++|....|+++|+|+......+.+.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~------------~---~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~ 82 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA------------G---EARFTDTRKDEQERGITIKSTAISLYSEMS 82 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEECC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccC------------C---CceeecCchhhhhcceeEeeceeEEEeccc
Confidence 5689999999999999999999988777654320 0 1245778888999999987665544433
Q ss_pred --------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcE
Q 005973 343 --------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (666)
Q Consensus 343 --------------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 408 (666)
++.++|||||||.+|...+..+++.+|++|+|||+..+. ..|+..++..+...++| +
T Consensus 83 ~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~--------~~qt~~~~~~~~~~~~p-~ 153 (842)
T 1n0u_A 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV--------CVQTETVLRQALGERIK-P 153 (842)
T ss_dssp HHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS--------CHHHHHHHHHHHHTTCE-E
T ss_pred ccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-e
Confidence 688999999999999999999999999999999999873 56888888888888998 8
Q ss_pred EEEEeccccccc----c----chhhhHHHHHHhhhhhhc--------CcCCCCCcEEEeecccCCCcc---------cCC
Q 005973 409 IVAVNKMDAVQY----S----KDRFDSIKVQLGTFLRSC--------GFKDASLTWIPLSALENQNLV---------TAP 463 (666)
Q Consensus 409 IVViNK~Dlv~~----~----~e~~~~i~~el~~~l~~~--------~~~~~~i~iIpvSA~tG~nI~---------e~~ 463 (666)
|+|+||+|+... + ...+..+.+++...+..+ .+.+...++...||++|+++. +..
T Consensus 154 ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~ 233 (842)
T 1n0u_A 154 VVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKF 233 (842)
T ss_dssp EEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTT
T ss_pred EEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhc
Confidence 999999998732 1 122444555555554321 133223456778998886531 000
Q ss_pred C-C---cccccc--------------------------------------------------------------------
Q 005973 464 D-D---GRLLSW-------------------------------------------------------------------- 471 (666)
Q Consensus 464 ~-~---~~~~~W-------------------------------------------------------------------- 471 (666)
. + ....-|
T Consensus 234 ~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~ 313 (842)
T 1n0u_A 234 GVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKD 313 (842)
T ss_dssp TSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGG
T ss_pred CCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHh
Confidence 0 0 000001
Q ss_pred --------------CC-cccHHHHh-hhcCCCC-------------------------CCCCCCceeeEEeEeecC-CCe
Q 005973 472 --------------YK-GPCLLDAI-DSLRPPP-------------------------REFSKPLLMPICDVLKSQ-HGQ 509 (666)
Q Consensus 472 --------------y~-g~~LL~~L-~~l~~~~-------------------------~~~~~p~~~~I~~v~~~~-~G~ 509 (666)
+- ...||++| ..+|+|. .+.+.||.+.|++++..+ .|.
T Consensus 314 ~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~ 393 (842)
T 1n0u_A 314 LEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGR 393 (842)
T ss_dssp CCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTC
T ss_pred hhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCc
Confidence 00 14567776 4455542 245689999999999988 896
Q ss_pred -EEEEEEEEeeeEeeCcEEEEcCCC------c---eEEEeeeeec----CcccceeccCCceeEEeeccCcCccccccEE
Q 005973 510 -VSACGKLEAGALRSGLKVLVLPSG------E---VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 575 (666)
Q Consensus 510 -v~v~G~V~sG~Lk~Gd~v~v~P~~------~---~~~VksI~~~----~~~v~~A~aGd~V~l~L~gid~~~i~~G~VL 575 (666)
+ +++||.+|+|+.||.|.++..+ . ..+|..|... ..++++|.|||+|+|. |++...+..| +|
T Consensus 394 ~l-~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl 469 (842)
T 1n0u_A 394 FY-AFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TL 469 (842)
T ss_dssp EE-EEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EE
T ss_pred eE-EEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-ee
Confidence 6 8999999999999999865321 2 4678887653 4689999999999887 7754433445 89
Q ss_pred ecCCCC
Q 005973 576 CHPDFP 581 (666)
Q Consensus 576 ~~~~~p 581 (666)
|+.+.+
T Consensus 470 ~~~~~~ 475 (842)
T 1n0u_A 470 TTSETA 475 (842)
T ss_dssp ESCTTC
T ss_pred cCCCCc
Confidence 886543
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=2.3e-20 Score=178.13 Aligned_cols=152 Identities=30% Similarity=0.380 Sum_probs=107.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+|.+|+|||||+++|++.... ....+++|.+.....+...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-------------------------------EQEAGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-------------------------------CSSCCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-------------------------------cCCCCceeEeeeEEEEEeCC
Confidence 35689999999999999999999843111 11123344444444556677
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+. ..+..+.+..+...++| +++|+||+|+...+.+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV--------MPQTVEAINHAKAANVP-IIVAINKMDKPEANPD 125 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC--------CHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHhCCCC-EEEEEECccCCcCCHH
Confidence 88999999999998877777888999999999998763 34666677777677888 9999999999853222
Q ss_pred hhhHHHHHHhh---hhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~---~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. +...+.. +...++ ..++++++||++|.|+.+
T Consensus 126 ~---~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 126 R---VMQELMEYNLVPEEWG---GDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp H---HHHHHTTTTCCBTTTT---SSEEEEECCSSSSHHHHH
T ss_pred H---HHHHHHhcCcChhHcC---CcccEEEEecCCCCCHHH
Confidence 2 2222221 111111 125799999999999976
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=6.4e-19 Score=194.57 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=111.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++.... .....+|+|.+.....+...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV------------------------------IVSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EEC---------CCEEEEETTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce------------------------------eecCCCCceeeeeEEEEEECCe
Confidence 4689999999999999999999954221 1223468888887777888888
Q ss_pred EEEEEeCCCc----------cchHHH-HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 345 HVVVLDSPGH----------KDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 345 ~i~liDTPGh----------~~f~~~-~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
.+.||||||+ +.|... .+.++..+|++|+|+|++++. ..|..+++..+...+.| +|+|+|
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~--------s~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999998 444332 345788899999999999873 34666777777778888 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|+|+.+.....++++.+++...+.... .++++++||++|.|+.++
T Consensus 295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 295 KWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTL 339 (436)
T ss_dssp CGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGH
T ss_pred CccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHH
Confidence 999986544444556566655554333 358999999999999874
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=8.3e-19 Score=174.31 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=107.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe-cCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~-~~~ 343 (666)
..++|+|+|++|+|||||+++|++.... .......|+|.+.....+. ..+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~ 78 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------------AFASKTPGRTQHINYFSVGPAAE 78 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------------SCTTCCCCSCCCEEEEEESCTTS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------------eeecCCCCcccceEEEEecCCCC
Confidence 4689999999999999999999854210 0111234667776666665 567
Q ss_pred eEEEEEeCCCcc----------c---hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005973 344 YHVVVLDSPGHK----------D---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (666)
Q Consensus 344 ~~i~liDTPGh~----------~---f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (666)
..+.||||||+. . +....+.....+|++|+|+|+..+ +.......+..+...++| +|+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~l~~~~~p-~i~ 149 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP--------LTELDRRMIEWFAPTGKP-IHS 149 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHGGGCCC-EEE
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEE
Confidence 889999999952 2 233344445558999999999875 234566677777778888 999
Q ss_pred EEeccccccccchhhhHHHHHHhhhhhhc---CcCCCCCcEEEeecccCCCccc
Q 005973 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~i~~el~~~l~~~---~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+||+|+.. .........++...+..+ +. ....+++++||++|.|+.+
T Consensus 150 v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 150 LLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp EEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHH
T ss_pred EEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHH
Confidence 999999984 233333333343433332 10 1246899999999999966
No 36
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.78 E-value=2.8e-18 Score=163.32 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
.+++.++|+|+|++|+|||||+++|++... .....+.++.+.....+..
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSF-------------------------------DNTYQATIGIDFLSKTMYL 58 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCC-------------------------------CSSCCCCCSEEEEEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeeEEEEEEEEE
Confidence 345679999999999999999999984311 1112234444444444444
Q ss_pred CC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccc
Q 005973 342 KN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMD 416 (666)
Q Consensus 342 ~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~D 416 (666)
.+ ..+.||||||+.+|...+..++..+|++|+|+|++.+.. +. .....+..+.. .++| +|+|+||+|
T Consensus 59 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~p-iilv~nK~D 130 (179)
T 2y8e_A 59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---FH----QTSKWIDDVRTERGSDVI-IMLVGNKTD 130 (179)
T ss_dssp TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---HH----THHHHHHHHHHHHTTSSE-EEEEEECGG
T ss_pred CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCc-EEEEEECCc
Confidence 44 578999999999998888888899999999999986421 11 11222222222 3566 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+........+ +...+++..+ ++++++||++|.|+.+
T Consensus 131 l~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 131 LSDKRQVSTE----EGERKAKELN-----VMFIETSAKAGYNVKQ 166 (179)
T ss_dssp GGGGCCSCHH----HHHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred ccccCcCCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 9753221112 2223333333 4789999999999965
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=2e-18 Score=182.07 Aligned_cols=152 Identities=25% Similarity=0.305 Sum_probs=110.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
...-.|+|+|++|+|||||+|+|++....+. ...+++|.+.....+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~------------------------------s~~~~tT~~~~~~~~~~~~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSII------------------------------SPKAGTTRMRVLGVKNIPN 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcccc------------------------------CCCCCceeeEEEEEEecCC
Confidence 3567899999999999999999996533221 223566776666666777
Q ss_pred CeEEEEEeCCCccc----------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHH-HHHHHHcCCCcEEEE
Q 005973 343 NYHVVVLDSPGHKD----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH-AQLIRSFGVDQLIVA 411 (666)
Q Consensus 343 ~~~i~liDTPGh~~----------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~-l~ll~~lgip~iIVV 411 (666)
+.+++||||||+.+ +...+..++..+|++|+|+|++.+. ..+.... +..+...++| +|+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~--------~~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW--------RPRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS--------CHHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC--------CchhHHHHHHHHHhcCCC-EEEE
Confidence 89999999999854 3466677888999999999999763 3455555 6777777888 9999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+||+|+... ........+++... ++ ...+++++||++|.|+.+
T Consensus 129 ~NK~Dl~~~-~~~~~~~~~~l~~~---~~---~~~~i~~vSA~~g~gv~~ 171 (308)
T 3iev_A 129 INKIDKIGP-AKNVLPLIDEIHKK---HP---ELTEIVPISALKGANLDE 171 (308)
T ss_dssp EECGGGSSS-GGGGHHHHHHHHHH---CT---TCCCEEECBTTTTBSHHH
T ss_pred EECccCCCC-HHHHHHHHHHHHHh---cc---CCCeEEEEeCCCCCCHHH
Confidence 999999731 23333333333333 22 124789999999999966
No 38
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=3e-18 Score=169.18 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=102.8
Q ss_pred cCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhccccccccccc
Q 005973 249 YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328 (666)
Q Consensus 249 ~~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~ 328 (666)
.+++.||...........++|+|+|++|+|||||+++|+.... .....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-------------------------------~~~~~~ 57 (201)
T 2ew1_A 9 HHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLF-------------------------------PPGQGA 57 (201)
T ss_dssp -------------CCSEEEEEEEEESTTSSHHHHHHHHHHSSC-------------------------------CTTCCC
T ss_pred cccccccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCC-------------------------------CCCCCC
Confidence 4567777766666667789999999999999999999984311 111123
Q ss_pred CeEEEEEEEEEecCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---c
Q 005973 329 GITMTVAVAYFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---F 403 (666)
Q Consensus 329 GiTid~~~~~~~~~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---l 403 (666)
.++.+.....+..++ ..+.||||||+++|...+..++..+|++|+|+|++.... +. .....+..+.. .
T Consensus 58 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~----~~~~~~~~i~~~~~~ 130 (201)
T 2ew1_A 58 TIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR----CLPEWLREIEQYASN 130 (201)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH----THHHHHHHHHHHSCT
T ss_pred ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCC
Confidence 334444444444444 578899999999999888889999999999999987521 11 11222333333 2
Q ss_pred CCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 404 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 404 gip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
++| +|+|+||+|+........ ++...+.+..+ ++++++||++|.|+.+
T Consensus 131 ~~p-iilv~NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 131 KVI-TVLVGNKIDLAERREVSQ----QRAEEFSEAQD-----MYYLETSAKESDNVEK 178 (201)
T ss_dssp TCE-EEEEEECGGGGGGCSSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred CCC-EEEEEECCCCccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 455 899999999974222111 22233333333 4789999999999976
No 39
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=2.4e-18 Score=180.93 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=104.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+..+|+|+|++|+|||||+|+|++....+.. ..+++|.+.....+...+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs------------------------------~~~~tTr~~i~~i~~~~~~ 55 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS------------------------------PRPQTTRKRLRGILTEGRR 55 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC------------------------------SSSCCCCSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec------------------------------CCCCceeEEEEEEEEeCCc
Confidence 4567999999999999999999965333211 1234444433344556788
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEec
Q 005973 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNK 414 (666)
Q Consensus 345 ~i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK 414 (666)
+++||||||+.+ |......++..+|++|+|+|++++. .....+.+..+... ++| +|+|+||
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~--------~~~~~~i~~~l~~~~~~~p-~ilV~NK 126 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP--------TPEDELVARALKPLVGKVP-ILLVGNK 126 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC--------CHHHHHHHHHHGGGTTTSC-EEEEEEC
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC--------ChHHHHHHHHHHhhcCCCC-EEEEEEC
Confidence 999999999876 6667778889999999999998762 34555566667666 787 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+... .. . +.+.+..+ .+ ..+++++||++|.|+.+
T Consensus 127 ~Dl~~~--~~-~-~~~~~~~~---~~----~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 127 LDAAKY--PE-E-AMKAYHEL---LP----EAEPRMLSALDERQVAE 162 (301)
T ss_dssp GGGCSS--HH-H-HHHHHHHT---ST----TSEEEECCTTCHHHHHH
T ss_pred cccCCc--hH-H-HHHHHHHh---cC----cCcEEEEeCCCCCCHHH
Confidence 999742 11 0 22222222 22 24689999999999965
No 40
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=3.4e-18 Score=160.06 Aligned_cols=143 Identities=21% Similarity=0.289 Sum_probs=100.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++|+|||||+++|++..... .....++|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999999542111 11224556666666677788899
Q ss_pred EEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 347 ~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.||||||+.. +...+...+..+|++|+|+|++.+. .....+...++...++| +++|+||+|+.+
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL--------TQADYEVAEYLRRKGKP-VILVATKVDDPK 122 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC--------CHHHHHHHHHHHHHTCC-EEEEEECCCSGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc--------cHhHHHHHHHHHhcCCC-EEEEEECccccc
Confidence 9999999887 4556667788999999999998752 23445556667777888 999999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .++..+. .+++ .+++++||++|.|+.+
T Consensus 123 ~~--------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 123 HE--------LYLGPLY-GLGF----GDPIPTSSEHARGLEE 151 (161)
T ss_dssp GG--------GGCGGGG-GGSS----CSCEECBTTTTBSHHH
T ss_pred ch--------HhHHHHH-hCCC----CCeEEEecccCCChHH
Confidence 31 1222233 3343 2679999999999966
No 41
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=166.34 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=104.6
Q ss_pred CcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccC
Q 005973 250 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 329 (666)
Q Consensus 250 ~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~G 329 (666)
+++.+|.....+.....++|+|+|++|+|||||+++|++...... .....|
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~ 59 (193)
T 2oil_A 9 HHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIG 59 (193)
T ss_dssp -----------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSS
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccc
Confidence 444555555556667789999999999999999999995321110 011224
Q ss_pred eEEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCC
Q 005973 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVD 406 (666)
Q Consensus 330 iTid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip 406 (666)
++.......+......+.||||||+.+|...+..++..+|++|+|+|++.... + ......+..+... ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~----~~~~~~l~~i~~~~~~~~p 132 (193)
T 2oil_A 60 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y----AVVERWLKELYDHAEATIV 132 (193)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H----HTHHHHHHHHHTTSCTTCE
T ss_pred eeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCe
Confidence 44444444444456788999999999998888888999999999999987421 1 1122233333332 555
Q ss_pred cEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 407 ~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+|+||+|+........ .++..++...+ ++++++||++|.|+.+
T Consensus 133 -iilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 133 -VMLVGNKSDLSQAREVPT----EEARMFAENNG-----LLFLETSALDSTNVEL 177 (193)
T ss_dssp -EEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred -EEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 999999999975322111 22333343333 4789999999999976
No 42
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.77 E-value=6e-18 Score=159.37 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=102.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+|+|++|+|||||+++|++.... .......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFH-----------------------------EFQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceEEEEEEEEECCEE
Confidence 35689999999999999999999943110 0011223444444444444456
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+...
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES------F-ARAKNWVKELQRQASPNIV-IALSGNKADLANK 126 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH------H-HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH------H-HHHHHHHHHHHHhcCCCCc-EEEEEECccCccc
Confidence 789999999999998888888999999999999987521 1 1222333333332 455 8899999999743
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... +++..++...+ ++++++||++|.|+.+
T Consensus 127 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 127 RAVDF----QEAQSYADDNS-----LLFMETSAKTSMNVNE 158 (170)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 22111 22333333333 5789999999999965
No 43
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.7e-18 Score=192.29 Aligned_cols=156 Identities=18% Similarity=0.267 Sum_probs=118.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+++|++|+|||||+++|++.... ......|+|.+.....+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~------------------------------~~~~~~gtt~~~~~~~~~~~~ 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV------------------------------IVSNVAGTTRDAVDTSFTYNQ 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EECC------CTTSEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeEEEEEEEEEEECC
Confidence 35789999999999999999999953221 122335777777666777788
Q ss_pred eEEEEEeCCC----------ccchHHH-HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 344 YHVVVLDSPG----------HKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPG----------h~~f~~~-~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
..+.|||||| ++.|... .+.++..+|++|+|+|++.+. ..+..+++.++...++| +|+|+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~--------~~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc--------CHHHHHHHHHHHHcCCC-EEEEE
Confidence 8999999999 5666544 445788899999999999873 46888888888888988 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
||+|+.+.....++++.+.+...+...++ ++++++||++|.|+.++
T Consensus 314 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 314 NKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTL 359 (456)
T ss_dssp ECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGH
T ss_pred EChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHH
Confidence 99999876555566667777666654443 57999999999999773
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.76 E-value=5.7e-18 Score=161.48 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=99.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|++.... .+..+.++.+.....+...+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 52 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG-------------------------------KQYKQTIGLDFFLRRITLPG 52 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT-------------------------------HHHHHTTTSSEEEEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC-------------------------------CCCCCceeEEEEEEEEEeCC
Confidence 45789999999999999999999953210 01112222233333444443
Q ss_pred ---eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEecc
Q 005973 344 ---YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKM 415 (666)
Q Consensus 344 ---~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViNK~ 415 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. +. .....+..+.. .+.|++|+|+||+
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FE----NLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HH----THHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 789999999999998888888999999999999987521 11 11222222222 2566588999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+........ ++...+.+..+ ++++++||++|.|+.+
T Consensus 126 Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 126 DLEHMRTIKP----EKHLRFCQENG-----FSSHFVSAKTGDSVFL 162 (178)
T ss_dssp GGGGGCSSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHH
T ss_pred ccccccccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Confidence 9975221111 22333444444 4789999999999966
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=9e-18 Score=163.42 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=106.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+|++|+|||||+++|++.... .......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-----------------------------HNISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-----------------------------TTCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCcCCCcceeEEEEEEEeCCEE
Confidence 45799999999999999999999853210 0111234555555555555567
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+...+..+|++|+|+|++..... ......+..+... ++| +|+|+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~-------~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-------YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHH-------HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHH-------HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 7899999999999988888889999999999999875211 1223333334443 566 9999999999742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... +++..+++..+ ++++++||++|.|+.+
T Consensus 144 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 144 REVPL----KDAKEYAESIG-----AIVVETSAKNAINIEE 175 (192)
T ss_dssp CCSCH----HHHHHHHHTTT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 22112 23344444444 4789999999999966
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.76 E-value=1e-17 Score=161.00 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=102.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++.... ....+.++.+.....+...+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-------------------------------DDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------TTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCccceEEEEEEEEECC
Confidence 45789999999999999999999843211 11223445454444555444
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEeccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv 418 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. +. .....+..+. ..++| +++|+||+|+.
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN----ALTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH----THHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 678999999999999999999999999999999987521 11 1112222222 23566 99999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....... .+...+++..+ ++++++||++|.|+.+
T Consensus 129 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 129 ADREVTF----LEASRFAQENE-----LMFLETSALTGENVEE 162 (186)
T ss_dssp GGCCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 4322211 22333343333 5789999999999976
No 47
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=3.1e-18 Score=177.57 Aligned_cols=145 Identities=22% Similarity=0.263 Sum_probs=105.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|++|+|||||+|+|++... .....+|+|.+.....+...+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCCC
Confidence 568999999999999999999985321 1223468899988888888889
Q ss_pred EEEEEeCCCccchHH---------H-HHH--hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 345 HVVVLDSPGHKDFVP---------N-MIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 345 ~i~liDTPGh~~f~~---------~-~~~--~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
.+.||||||+.++.. . ... ....+|++|+|+|++.. ......+..+..+++| +|+|+
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~~~~~~l~~~~~p-~ivv~ 119 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNLYLTLQLLELGIP-CIVAL 119 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHHHHHHHHHHHTCC-EEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHHHHHHHHHhcCCC-EEEEE
Confidence 999999999877651 1 111 23689999999999862 2344555667778999 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+..... .....+.+.. .++ ++++++||++|.|+.+
T Consensus 120 NK~Dl~~~~~--~~~~~~~l~~---~lg-----~~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 120 NMLDIAEKQN--IRIEIDALSA---RLG-----CPVIPLVSTRGRGIEA 158 (274)
T ss_dssp ECHHHHHHTT--EEECHHHHHH---HHT-----SCEEECCCGGGHHHHH
T ss_pred ECccchhhhh--HHHHHHHHHH---hcC-----CCEEEEEcCCCCCHHH
Confidence 9999874211 1111222322 233 4789999999999966
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.76 E-value=1.1e-17 Score=162.20 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=70.2
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHHHcCCCcEEEEEeccccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+... ......+. +....++| +|+|+||+| .....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~-------~~~~~~~~~i~~~~~~p-iilv~NK~D-~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL-------DRAKTWVNQLKISSNYI-IILVANKID-KNKFQ 163 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHH-------HHHHHHHHHHHHHSCCE-EEEEEECTT-CC-CC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH-------HHHHHHHHHHHhhCCCc-EEEEEECCC-ccccc
Confidence 7899999999999998888899999999999999875211 11222232 33334555 999999999 32112
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... +++..+++..+ ++++++||++|.|+.+
T Consensus 164 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 164 VDI----LEVQKYAQDNN-----LLFIQTSAKTGTNIKN 193 (208)
T ss_dssp SCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred CCH----HHHHHHHHHcC-----CcEEEEecCCCCCHHH
Confidence 222 33444444444 4789999999999976
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=8.2e-18 Score=163.12 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=104.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++... .....++++.+.....+...+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-------------------------------TESYISTIGVDFKIRTIELDG 62 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-------------------------------CSCCCCCSSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CCCCCCcccceEEEEEEEECC
Confidence 4568999999999999999999984311 112234455555555555555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv 418 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.... + ......+..+... ++| +|+|+||+|+.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 134 (196)
T 3tkl_A 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F----NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 678999999999999888889999999999999987421 1 1122233333333 566 89999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.......+ +...+...++ ++++++||++|.|+.+
T Consensus 135 ~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 135 TKKVVDYT----TAKEFADSLG-----IPFLETSAKNATNVEQ 168 (196)
T ss_dssp TTCCSCHH----HHHHHHHHTT-----CCEEEECTTTCTTHHH
T ss_pred cccccCHH----HHHHHHHHcC-----CcEEEEeCCCCCCHHH
Confidence 53322221 2233333334 4789999999999976
No 50
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=7e-18 Score=158.91 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=100.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+|+|++|+|||||+++|++..... ......|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE-----------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEE
Confidence 46899999999999999999998432110 0111223344334344444456
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|...+...+..+|++|+|+|++.+... ......+..+.. .++| +++|+||+|+....
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF-------IKARHWVKELHEQASKDII-IALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHH-------HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSS
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHH-------HHHHHHHHHHHHhcCCCCc-EEEEEECCCccccc
Confidence 889999999999988888889999999999999875211 122222222222 2556 89999999997532
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+ +...++...+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 125 GER-KVAREEGEKLAEEKG-----LLFFETSAKTGENVND 158 (170)
T ss_dssp CCC-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred ccc-CCCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 111122333333334 4789999999999965
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=162.04 Aligned_cols=150 Identities=19% Similarity=0.137 Sum_probs=102.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++... .....++++.+.....+...+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF-------------------------------SGSYITTIGVDFKIRTVEING 55 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCccCCCceeEEEEEEEEECC
Confidence 4578999999999999999999983211 112234555565555665555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-c-CCCcEEEEEecccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVViNK~Dlv~ 419 (666)
..+.||||||+.++...+..++..+|++|+|+|++.+.. + ......+..+.. . ++| +|+|+||+|+..
T Consensus 56 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 56 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F----VNVKRWLHEINQNCDDVC-RILVGNKNDDPE 127 (181)
T ss_dssp EEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHCTTSE-EEEEEECTTCGG
T ss_pred EEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhCCCCC-EEEEEECCCCch
Confidence 778999999999998888888899999999999987521 1 111222222222 2 355 899999999875
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... .+...+....+ ++++++||++|.|+.+
T Consensus 128 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 128 RKVVET----EDAYKFAGQMG-----IQLFETSAKENVNVEE 160 (181)
T ss_dssp GCCSCH----HHHHHHHHHHT-----CCEEECBTTTTBSHHH
T ss_pred hcccCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 322111 22233333334 4789999999999976
No 52
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=167.51 Aligned_cols=164 Identities=17% Similarity=0.180 Sum_probs=97.6
Q ss_pred CcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccC
Q 005973 250 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 329 (666)
Q Consensus 250 ~~e~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~G 329 (666)
+++.|+.....+.....++|+|+|+.|+|||||+++|++.... ....+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t 57 (200)
T 2o52_A 9 HHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFK-------------------------------QDSNHT 57 (200)
T ss_dssp -------------CCEEEEEEEEESTTSSHHHHHHHHHC-----------------------------------------
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------ccCCCc
Confidence 4555555555555567899999999999999999999843111 111122
Q ss_pred eEEEEEEEEEecCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cC
Q 005973 330 ITMTVAVAYFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FG 404 (666)
Q Consensus 330 iTid~~~~~~~~~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lg 404 (666)
++.+.....+...+ ..+.||||||+.+|...+..++..+|++|+|+|++.+.. +. .....+..+.. .+
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~ 130 (200)
T 2o52_A 58 IGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN----SLAAWLTDARTLASPN 130 (200)
T ss_dssp --CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---HH----THHHHHHHHHHHTCTT
T ss_pred ccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhcCCC
Confidence 33333333444444 689999999998887777778899999999999987521 11 11222222222 25
Q ss_pred CCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 405 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 405 ip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+| +|+|+||+|+........ .+...+++..+ ++++++||++|.|+.+
T Consensus 131 ~p-iilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 131 IV-VILCGNKKDLDPEREVTF----LEASRFAQENE-----LMFLETSALTGENVEE 177 (200)
T ss_dssp CE-EEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred Cc-EEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 66 999999999974222111 22233333333 5789999999999976
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.75 E-value=9.7e-18 Score=160.28 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=101.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
....++|+|+|++|+|||||+++|++..... ......|.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVE-----------------------------FQESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-----------------------------TSCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------cCCCCceeEEEEEEEEECCE
Confidence 3457899999999999999999998431100 00111233333333333334
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~ 419 (666)
...+.||||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+..
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~ 131 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F----ERAKKWVQELQAQGNPNMV-MALAGNKSDLLD 131 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 5689999999999998888888999999999999987521 1 1223333444443 555 899999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... +++..+++..+ ++++++||++|.|+.+
T Consensus 132 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 132 ARKVTA----EDAQTYAQENG-----LFFMETSAKTATNVKE 164 (181)
T ss_dssp TCCSCH----HHHHHHHHHTT-----CEEEECCSSSCTTHHH
T ss_pred cccCCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 322111 23334444434 4789999999999966
No 54
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.75 E-value=8e-18 Score=163.22 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=102.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|++.... ... ..|+...+..+...+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~--~~t~~~~~~~~~~~~ 66 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-------------------------------EDM--IPTVGFNMRKITKGN 66 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------CSC--CCCCSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------Ccc--CCCCceeEEEEEeCC
Confidence 45799999999999999999999843110 001 112223334466778
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.... +.....+...++.. .++| +|+|+||+|+...
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK------IEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGA 139 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG------HHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH------HHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccC
Confidence 999999999999998888888899999999999987421 11122222233332 4666 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ..+++.+.+... .+....++++++||++|.|+.+
T Consensus 140 ~--~~~~~~~~~~~~----~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 140 L--DEKELIEKMNLS----AIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp C--CHHHHHHHTTGG----GCCSSCEEEEECCTTTCTTHHH
T ss_pred C--CHHHHHHHhChh----hhccCCeeEEEEECCCCCCHHH
Confidence 1 222233332211 1112346789999999999966
No 55
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=1.5e-17 Score=160.64 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=104.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++.... ......|+|........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~---~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA------------------------------FVSKTPGKTRSINFYLV---N 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS------------------------------CCCSSCCCCCCEEEEEE---T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc------------------------------cccCCCCCccCeEEEEE---C
Confidence 35689999999999999999999954211 11122344544443332 3
Q ss_pred eEEEEEeCCC----------ccchHH---HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEE
Q 005973 344 YHVVVLDSPG----------HKDFVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (666)
Q Consensus 344 ~~i~liDTPG----------h~~f~~---~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 410 (666)
..+.|||||| +..|.. .....+..+|++++|+|+..+. .......+.++...++| +|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHHcCCC-EEE
Confidence 4688999999 444443 3444445569999999998652 34555667778888888 999
Q ss_pred EEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+||+|+.+ ....+...+++..++...+ .++++++||++|.|+.+
T Consensus 139 v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 139 VLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISE 183 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHH
T ss_pred EEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHH
Confidence 999999984 3344555566666665433 35789999999999966
No 56
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=9.6e-18 Score=158.59 Aligned_cols=151 Identities=23% Similarity=0.153 Sum_probs=101.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+|++|+|||||+++|+..... +. ..|+......+...+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--------------------------------~~--~~t~~~~~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV--------------------------------TT--IPTIGFNVETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC--------------------------------CC--CCCSSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--------------------------------Cc--CCcCccceEEEEECC
Confidence 35689999999999999999999842110 00 112223334455668
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. +.....+...++.. .++| +|+|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR------IGISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT------HHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 899999999999998888888899999999999987521 11122222233332 3566 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++...+... .+....++++++||++|.|+.+
T Consensus 124 --~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 124 --MTSSEMANSLGLP----ALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp --CCHHHHHHHHTGG----GCTTSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhCch----hccCCceEEEECcCCCCcCHHH
Confidence 2223333333221 1112345789999999999966
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.75 E-value=5.9e-18 Score=158.72 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=96.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCe-EEEEEEEEEecCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~Gi-Tid~~~~~~~~~~ 343 (666)
+.++|+|+|++|+|||||+++|++.... ....+.+ +.......+....
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 50 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI-------------------------------EKYDPTIEDFYRKEIEVDSSP 50 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SCCCTTCCEEEEEEEEETTEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------ccCCCCcceeEEEEEEECCEE
Confidence 5689999999999999999999953110 0000111 1111222233334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||||+.+|.......+..+|++|+|+|+..... +..+.....+.+......++| +|+|+||+|+....+.
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---FQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREV 126 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccC
Confidence 568899999999999888888999999999999987421 111111111122222223677 9999999998743221
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .+...+.+..+ ++++++||++|.|+.+
T Consensus 127 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 127 SS----SEGRALAEEWG-----CPFMETSAKSKTMVDE 155 (167)
T ss_dssp CH----HHHHHHHHHHT-----SCEEEECTTCHHHHHH
T ss_pred CH----HHHHHHHHHhC-----CCEEEecCCCCcCHHH
Confidence 11 22333443444 4689999999999966
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.75 E-value=9.4e-18 Score=157.81 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=97.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecCC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKN 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~~ 343 (666)
+.++|+|+|++|+|||||+++|++.... ....+.+.... ....+....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV-------------------------------EKYDPTIEDSYRKQVEVDCQQ 50 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-------------------------------CSCCCCSEEEEEEEEESSSCE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCCccceEEEEEEECCEE
Confidence 5689999999999999999999943110 00111111111 112233345
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.... +........+........++| +|+|+||+|+.+....
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV 126 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC
Confidence 678999999999998888888899999999999987421 111111111111111123667 9999999999753221
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. +++..+.+.++ .++++++||++|.|+.+
T Consensus 127 ~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 127 GK----EQGQNLARQWC----NCAFLESSAKSKINVNE 156 (167)
T ss_dssp CH----HHHHHHHHHTT----SCEEEECBTTTTBSHHH
T ss_pred CH----HHHHHHHHHcc----CCcEEEecCCCCCCHHH
Confidence 11 22333333331 35789999999999966
No 59
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=163.60 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=100.1
Q ss_pred cCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE
Q 005973 255 MLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV 334 (666)
Q Consensus 255 ~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~ 334 (666)
+...........++|+|+|++|+|||||+++|++..- ..+..+.++.+.
T Consensus 18 ~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~ 66 (201)
T 2hup_A 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAF-------------------------------SERQGSTIGVDF 66 (201)
T ss_dssp --------CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------CE
T ss_pred CCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCC-------------------------------CCCCCCCcceEE
Confidence 3334444455679999999999999999999984311 011112223334
Q ss_pred EEEEEecCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEE
Q 005973 335 AVAYFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLI 409 (666)
Q Consensus 335 ~~~~~~~~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iI 409 (666)
....+...+ ..+.||||||+.+|...+..++..+|++|+|+|++.... +. .....+..+.. .++| +|
T Consensus 67 ~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~----~~~~~~~~i~~~~~~~~p-ii 138 (201)
T 2hup_A 67 TMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---FL----SVPHWIEDVRKYAGSNIV-QL 138 (201)
T ss_dssp EEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---HH----THHHHHHHHHHHSCTTCE-EE
T ss_pred EEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCC-EE
Confidence 344444444 688999999999999988889999999999999986421 11 12223333333 3455 89
Q ss_pred EEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 410 VViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+||+|+....... .+++..+++..++ .+++++||++|.|+.+
T Consensus 139 lv~NK~Dl~~~~~v~----~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 139 LIGNKSDLSELREVS----LAEAQSLAEHYDI----LCAIETSAKDSSNVEE 182 (201)
T ss_dssp EEEECTTCGGGCCSC----HHHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred EEEECCccccccccC----HHHHHHHHHHcCC----CEEEEEeCCCCCCHHH
Confidence 999999997421211 1233344444443 2789999999999976
No 60
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=4e-18 Score=175.19 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=110.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++|+|||||+|+|++.. ......+|+|++.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-------------------------------~~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-------------------------------QRVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-------------------------------EEEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-------------------------------CCccCCCCceEEEEEEEEEECCeEE
Confidence 579999999999999999998431 1122346889888888888888999
Q ss_pred EEEeCCCccchHH----------HHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 347 VVLDSPGHKDFVP----------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 347 ~liDTPGh~~f~~----------~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
.||||||+..+.. ....++ ..+|++|+|+|++.. .........+..+++| +|+|+||
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~~~l~~~l~~~~~p-vilv~NK 119 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERHLYLTSQLFELGKP-VVVALNM 119 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHHHHHHHHHTTSCSC-EEEEEEC
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhHHHHHHHHHHcCCC-EEEEEEC
Confidence 9999999887654 222333 679999999999862 2344555667778888 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccCCCCccccccCCcccHHHHhhhc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 484 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~~~~~~~~~Wy~g~~LL~~L~~l 484 (666)
+|+..... .....+.+... ++ ++++++||++|.|+.+ |++.|..+
T Consensus 120 ~Dl~~~~~--~~~~~~~l~~~---lg-----~~vi~~SA~~g~gi~e---------------l~~~i~~~ 164 (256)
T 3iby_A 120 MDIAEHRG--ISIDTEKLESL---LG-----CSVIPIQAHKNIGIPA---------------LQQSLLHC 164 (256)
T ss_dssp HHHHHHTT--CEECHHHHHHH---HC-----SCEEECBGGGTBSHHH---------------HHHHHHTC
T ss_pred hhcCCcCC--cHHHHHHHHHH---cC-----CCEEEEECCCCCCHHH---------------HHHHHHhh
Confidence 99874321 11112223332 33 4789999999999966 78877655
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=162.57 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=100.5
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
+.....++|+|+|+.|+|||||+++|++... .....+.++.+.....+.
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~ 69 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTF-------------------------------CEACKSTVGVDFKIKTVE 69 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEE
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCCCCccceeEEEEEEE
Confidence 3345678999999999999999999984211 011112333343344444
Q ss_pred cC--CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecc
Q 005973 341 SK--NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKM 415 (666)
Q Consensus 341 ~~--~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~ 415 (666)
.. ...+.||||||+.+|...+..++..+|++|+|+|++.+... . .....+..+... ++| +|+|+||+
T Consensus 70 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~---~----~~~~~~~~i~~~~~~~~p-iilV~NK~ 141 (192)
T 2il1_A 70 LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF---D----DLPKWMKMIDKYASEDAE-LLLVGNKL 141 (192)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHH---H----THHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred ECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH---H----HHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 44 36789999999999999888899999999999999875311 1 112223334333 566 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+........ +++..+.+.+ ..++++++||++|.|+.+
T Consensus 142 Dl~~~~~v~~----~~~~~~~~~~----~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 142 DCETDREITR----QQGEKFAQQI----TGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp GGGGGCCSCH----HHHHHHHHTS----TTCEEEECBTTTTBSHHH
T ss_pred ccccccccCH----HHHHHHHHhc----CCCeEEEEeCCCCCCHHH
Confidence 9975322111 2223333332 135789999999999976
No 62
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.75 E-value=8.8e-18 Score=163.20 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=104.1
Q ss_pred cccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEE
Q 005973 253 KWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 332 (666)
Q Consensus 253 ~~~~~~~~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTi 332 (666)
.++...........++|+|+|+.|+|||||+++|++...... .....|.+.
T Consensus 8 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~ 58 (191)
T 2a5j_A 8 HHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEF 58 (191)
T ss_dssp --CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCSSE
T ss_pred cccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccccee
Confidence 344444455566789999999999999999999995321100 001122223
Q ss_pred EEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEE
Q 005973 333 TVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLI 409 (666)
Q Consensus 333 d~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iI 409 (666)
......+......+.||||||+.+|...+..++..+|++|+|+|++.... + ......+..+... ++| +|
T Consensus 59 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~l~~i~~~~~~~~p-ii 130 (191)
T 2a5j_A 59 GARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F----NHLTSWLEDARQHSSSNMV-IM 130 (191)
T ss_dssp EEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EE
T ss_pred EEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCC-EE
Confidence 32233333334688999999999988877888899999999999987421 1 1122233333332 566 99
Q ss_pred EEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 410 VViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+||+|+....... .++...+.+..+ ++++++||++|.|+.+
T Consensus 131 lv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 131 LIGNKSDLESRRDVK----REEGEAFAREHG-----LIFMETSAKTACNVEE 173 (191)
T ss_dssp EEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHH
T ss_pred EEEECcccCCccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 999999997422211 122333444444 4789999999999976
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=7.4e-18 Score=160.50 Aligned_cols=153 Identities=13% Similarity=0.132 Sum_probs=98.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++... .....++++.+.....+...+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKF-------------------------------DTQLFHTIGVEFLNKDLEVDG 53 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC-------------------------------CC----CCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeeeEEEEEEEECC
Confidence 3568999999999999999999984311 011122333444344444444
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDA 417 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dl 417 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+.. +... ......+..... .++| +|+|+||+|+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 128 (177)
T 1wms_A 54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQNL-SNWKKEFIYYADVKEPESFP-FVILGNKIDI 128 (177)
T ss_dssp EEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HHTH-HHHHHHHHHHHTCSCTTTSC-EEEEEECTTC
T ss_pred EEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HHHH-HHHHHHHHHHccccccCCCc-EEEEEECCcc
Confidence 588999999999999888888999999999999987531 1111 111111111111 4566 9999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .... +++..+++.. ..++++++||++|.|+.+
T Consensus 129 ~~~-~~~~----~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 129 SER-QVST----EEAQAWCRDN----GDYPYFETSAKDATNVAA 163 (177)
T ss_dssp SSC-SSCH----HHHHHHHHHT----TCCCEEECCTTTCTTHHH
T ss_pred ccc-ccCH----HHHHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 731 1112 2223333211 235789999999999966
No 64
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.75 E-value=1.5e-17 Score=156.78 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=103.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+|+|++|+|||||+++|++.... .......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFD-----------------------------PNINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeEEEEEEEEEECCeE
Confidence 35689999999999999999999853210 0111234555554444555455
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+... ......+..+... .+| +++|+||+|+.+.
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF-------STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHH-------HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGG
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhCCCCCc-EEEEEECCccccc
Confidence 7899999999999988888889999999999999875211 1223333444443 344 8899999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+.. .++...+.+..+ ++++++||++|.|+.+
T Consensus 127 ~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 127 REVM----ERDAKDYADSIH-----AIFVETSAKNAININE 158 (170)
T ss_dssp CCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred cccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 2211 122333333333 4789999999999966
No 65
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=1.1e-17 Score=162.71 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=101.8
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
......++|+|+|+.|+|||||+++|++..... ... ..|+......++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------------------------~~~--~~t~~~~~~~~~ 59 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS------------------------------KHI--TATVGYNVETFE 59 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----------------------------------CC--CCCSSEEEEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc------------------------------ccc--ccccceeEEEEE
Confidence 344567899999999999999999998431110 000 112223334456
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-----------CCCcEE
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----------GVDQLI 409 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-----------gip~iI 409 (666)
..+..+.||||||+.+|...+..++..+|++|+|+|++.+.. | . ...+.+..+... ++| +|
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~-~~~~~~~~~~~~~~~~~~~~~~~~~p-ii 131 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---C-VVKSEIQAMLKHEDIRRELPGGGRVP-FL 131 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---H-HHHHHHHHHHTSHHHHSBCTTSCBCC-EE
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---H-HHHHHHHHHHhChhhhhcccccCCCC-EE
Confidence 788999999999999999888888999999999999997531 1 1 222222222221 677 99
Q ss_pred EEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 410 VViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+||+|+... ...+++.+.+.... + .....++++++||++|.|+.+
T Consensus 132 lv~NK~Dl~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 132 FFANKMDAAGA--KTAAELVEILDLTT--L-MGDHPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp EEEECTTSTTC--CCHHHHHHHHTHHH--H-HTTSCEEEEECBTTTTBTHHH
T ss_pred EEEECcCCCCC--CCHHHHHHHhcchh--h-ccCCeeEEEEeeCCCccCHHH
Confidence 99999999853 22233333333111 0 011345889999999999976
No 66
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=163.23 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=101.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
...+.++|+|+|+.|+|||||+++|++..... .+ ...|+......+..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~--~~~t~~~~~~~~~~ 64 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQS------------------------------QN--ILPTIGFSIEKFKS 64 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCC------------------------------SS--CCCCSSEEEEEEEC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCC------------------------------CC--cCCccceeEEEEEE
Confidence 34567999999999999999999998432100 00 11233344455666
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEeccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMD 416 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViNK~D 416 (666)
.+..+.||||||+.+|...+..++..+|++|+|+|++.... +.........++.. .++| +|+|+||+|
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 137 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR------MVVAKEELDTLLNHPDIKHRRIP-ILFFANKMD 137 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH------HHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHhChhhccCCCe-EEEEEeCcC
Confidence 77899999999999998888888999999999999987421 11111222233333 3566 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+... ...+++.+.+. ...+....++++++||++|.|+.+
T Consensus 138 l~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 138 LRDA--VTSVKVSQLLC----LENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp STTC--CCHHHHHHHHT----GGGCCSSCEEEEECBTTTTBTHHH
T ss_pred cccC--CCHHHHHHHhC----hhhccCCceEEEEccCCCCcCHHH
Confidence 9742 22233333222 112222346889999999999966
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.75 E-value=2.8e-18 Score=163.70 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=88.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
...++|+|+|++|+|||||+++|++.... ....+.++.+.....+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS-------------------------------QQYKATIGADFLTKEVTVDG 54 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------TTC---CCCSCEEEEECCSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC-------------------------------cccCCccceEEEEEEEEEcC
Confidence 45789999999999999999999953211 111122223333333333
Q ss_pred -CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HH------cCCCcEEEEEe
Q 005973 342 -KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RS------FGVDQLIVAVN 413 (666)
Q Consensus 342 -~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~------lgip~iIVViN 413 (666)
....+.||||||+.+|...+...+..+|++|+|+|++.+.. +. .....+..+ .. .++| +++|+|
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---FE----NIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---HH----THHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---HH----HHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 34689999999999998888888999999999999987521 11 111222111 11 4566 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|+........ ..++..+.+.. ..++++++||++|.|+.+
T Consensus 127 K~Dl~~~~~~v~---~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 127 KIDAEESKKIVS---EKSAQELAKSL----GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp CTTSCGGGCCSC---HHHHHHHHHHT----TSCCEEEEBTTTTBSHHH
T ss_pred CCccccccccCC---HHHHHHHHHhc----CCCeEEEEecCCCCCHHH
Confidence 999964221111 12222333211 235789999999999966
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=1.6e-17 Score=155.89 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=94.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|++.... .. .....+.+. .....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~---------------------------~~~t~~~~~-~~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFV--ED---------------------------YEPTKADSY-RKKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--SC---------------------------CCTTCCEEE-EEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccC--CC---------------------------CCCCcceEE-EEEEEECCEE
Confidence 35689999999999999999999953210 00 000011111 1112233334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HH---cCCCcEEEEEecccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RS---FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~---lgip~iIVViNK~Dlv~ 419 (666)
..+.||||||+.++...+..++..+|++|+|+|++.... +. .....+..+ .. .++| +++|+||+|+.+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA----ATADFREQILRVKEDENVP-FLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---HH----HHHHHHHHHHHHHCCTTSC-EEEEEECGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCc-EEEEEECccccc
Confidence 578999999999999888888999999999999987421 11 112222222 22 2566 999999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... +++..+++..+ ++++++||++|.|+.+
T Consensus 124 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 124 KRQVSV----EEAKNRADQWN-----VNYVETSAKTRANVDK 156 (168)
T ss_dssp GCCSCH----HHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred cCccCH----HHHHHHHHHcC-----CeEEEeCCCCCCCHHH
Confidence 322222 23333444444 4789999999999976
No 69
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.9e-17 Score=158.15 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=93.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
...++|+|+|++|+|||||+++|++.... .....++++.+.....+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~ 57 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL------------------------------AGTFISTVGIDFRNKVLDVDG 57 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC------------------------------CCCCCCCCSCEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------------CCCcCCceeeEEEEEEEEECC
Confidence 45789999999999999999999853211 01112333444433333444
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccc
Q 005973 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 -~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv 418 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+.. .++| +|+|+||+|+.
T Consensus 58 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---F----DNIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 3578999999999999888888999999999999987521 1 111222333333 3566 99999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....... .+...+.+..+ ++++++||++|.|+.+
T Consensus 130 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 130 HERVVKR----EDGEKLAKEYG-----LPFMETSAKTGLNVDL 163 (180)
T ss_dssp SCCCSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 5322111 22233333334 4689999999999966
No 70
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=1.3e-17 Score=158.68 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=101.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++..... ......|.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------DCPHTIGVEFGTRIIEVSGQK 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCTTSCCCCEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCeE
Confidence 356899999999999999999999532110 001112333333333443345
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+... ......+..+.. .++| +|+|+||+|+...
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-------NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHH-------HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHH-------HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 6789999999999999888899999999999999875211 111222222332 3555 9999999999743
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... +++..+++..+ ++++++||++|.|+.+
T Consensus 136 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 136 RDVTY----EEAKQFAEENG-----LLFLEASAKTGENVED 167 (179)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 22212 23344444444 4789999999999966
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.74 E-value=3.3e-17 Score=157.82 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=100.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~~ 342 (666)
...++|+|+|++|+|||||+++|++.... ....+.++.+.. ...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 57 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN-------------------------------SKFITTVGIDFREKRVVYRA 57 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------CSCCCCCSEEEEEEEEEECT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------cCcccccceeeeeEEEEEec
Confidence 45789999999999999999999943110 011122222322 2233332
Q ss_pred -----------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCc
Q 005973 343 -----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQ 407 (666)
Q Consensus 343 -----------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~ 407 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.+... ......+..+.. .++|
T Consensus 58 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~~p- 129 (195)
T 3bc1_A 58 NGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSF-------LNVRNWISQLQMHAYSENPD- 129 (195)
T ss_dssp TSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHH-------HTHHHHHHHHHHHSSSSSCC-
T ss_pred CCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhcCCCCCC-
Confidence 45899999999999999999999999999999999875211 111233333332 3566
Q ss_pred EEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 408 iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+|+||+|+....... .+++..++...+ ++++++||++|.|+.+
T Consensus 130 iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 130 IVLCGNKSDLEDQRAVK----EEEARELAEKYG-----IPYFETSAANGTNISH 174 (195)
T ss_dssp EEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred EEEEEECcccccccccC----HHHHHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 99999999997422111 123333444444 4789999999999976
No 72
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=9.5e-18 Score=159.41 Aligned_cols=145 Identities=20% Similarity=0.236 Sum_probs=94.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|++|+|||||+++|++.... ....+|+|++.....+...+.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS-------------------------------CC-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee-------------------------------ccCCCCcceeeeEEEEEECCc
Confidence 4588999999999999999999843110 111235555555555666778
Q ss_pred EEEEEeCCCccchH------HHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDFV------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f~------~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.+|||||+.+|. .....++ ..+|++++|+|+... ......+..+...++| +|+|+||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~p-~ilv~nK~D 119 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNKMD 119 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHHHHHHHHHHHTTCC-EEEEEECHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHhHHHHHHHHhcCCC-EEEEEEchH
Confidence 99999999988763 1222333 379999999999752 1222334444556888 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+..... ... +...+.+.++ ++++++||++|+|+.+
T Consensus 120 l~~~~~--~~~---~~~~~~~~~~-----~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 120 LAKSLG--IEI---DVDKLEKILG-----VKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HHHHTT--CCC---CHHHHHHHHT-----SCEEECBGGGTBSHHH
T ss_pred hccccC--hhh---HHHHHHHHhC-----CCEEEEEcCCCCCHHH
Confidence 864211 100 1122222233 4689999999999966
No 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.74 E-value=6.8e-18 Score=162.10 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
..++|+|+|++|+|||||+++|++... .....++++.+.....+...+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 55 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-------------------------------NSTFISTIGIDFKIRTIELDGK 55 (183)
T ss_dssp EEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCcccceeEEEEEEECCE
Confidence 468999999999999999999984311 011123344444444444444
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 005973 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 -~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~ 419 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+.+
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F----DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 788999999999988877788899999999999987421 1 1222333333332 566 999999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... +++..+++.++ ++++++||++|.|+.+
T Consensus 128 ~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 128 KRQVSK----ERGEKLALDYG-----IKFMETSAKANINVEN 160 (183)
T ss_dssp CCCSCH----HHHHHHHHHHT-----CEEEECCC---CCHHH
T ss_pred cCcCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 222111 22333444444 4789999999999976
No 74
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.74 E-value=2.5e-17 Score=159.78 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++.... .......|.|.......+ +.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~---~~ 69 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-----------------------------ARTSSKPGKTQTLNFYII---ND 69 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-----------------------------cccCCCCCceeeEEEEEE---CC
Confidence 5689999999999999999999843100 001112345555444433 23
Q ss_pred EEEEEeCCC----------ccchHHHHHHhcccC---CEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEE
Q 005973 345 HVVVLDSPG----------HKDFVPNMISGATQS---DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (666)
Q Consensus 345 ~i~liDTPG----------h~~f~~~~~~~~~~a---D~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 411 (666)
.+.|||||| +..|...+..++..+ |++|+|+|++.+. .....+.+.++...++| +|+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~i~v 140 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP--------SNDDVQMYEFLKYYGIP-VIVI 140 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEEE
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEE
Confidence 699999999 555655554444444 9999999998762 23445556677777888 9999
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+||+|+... ..+....+++...+.. ...++++++||++|.|+.+
T Consensus 141 ~nK~Dl~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 141 ATKADKIPK--GKWDKHAKVVRQTLNI----DPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EECGGGSCG--GGHHHHHHHHHHHHTC----CTTSEEEECCTTTCTTHHH
T ss_pred EECcccCCh--HHHHHHHHHHHHHHcc----cCCCceEEEEccCCCCHHH
Confidence 999999852 3333334444443321 1246899999999999966
No 75
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1e-17 Score=162.06 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+|+|++|+|||||+++|++.... ......| .....+...+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------~~~~t~~----~~~~~~~~~~~ 60 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV------------------------------HTSPTIG----SNVEEIVINNT 60 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE------------------------------EEECCSC----SSCEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------------------------------cCcCCCc----cceEEEEECCE
Confidence 4689999999999999999999942110 0001111 11223444678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|...+..++..+|++|+|+|++.+.. +.........++.. .++| +|+|+||+|+...
T Consensus 61 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 132 (187)
T 1zj6_A 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER------ISVTREELYKMLAHEDLRKAG-LLIFANKQDVKEC- 132 (187)
T ss_dssp EEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT------HHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC-
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH------HHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC-
Confidence 99999999999988888888899999999999987521 11222222233322 3566 9999999999742
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.+... .+....++++++||++|.|+.+
T Consensus 133 -~~~~~i~~~~~~~----~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 133 -MTVAEISQFLKLT----SIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp -CCHHHHHHHHTGG----GCCSSCEEEEECBTTTTBTHHH
T ss_pred -CCHHHHHHHhChh----hhcCCCcEEEEccCCCCcCHHH
Confidence 2222333333221 1222345889999999999966
No 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=156.92 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=91.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++..... .....|.+.......+.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD------------------------------LHEQLGEDVYERTLTVDGEDT 52 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc------------------------------ccCccccceeEEEEEECCEEE
Confidence 46899999999999999999998431110 011234444433334443445
Q ss_pred EEEEEeCCCccc--hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc----CCCcEEEEEeccccc
Q 005973 345 HVVVLDSPGHKD--FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAV 418 (666)
Q Consensus 345 ~i~liDTPGh~~--f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iIVViNK~Dlv 418 (666)
.+.||||||+.. +.......+..+|++|+|+|++.... + ....+.+..+... ++| +|+|+||+|+.
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---F----ESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---H----HHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 788999999987 34444556778999999999986421 1 1122233333332 677 99999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+...... .+...+...++ ++++++||++|.|+.+
T Consensus 125 ~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 125 RCREVSV----EEGRACAVVFD-----CKFIETSATLQHNVAE 158 (175)
T ss_dssp TTCCSCH----HHHHHHHHHHT-----SEEEECBTTTTBSHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 5322111 12223333333 4789999999999976
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=2.3e-17 Score=155.05 Aligned_cols=148 Identities=19% Similarity=0.167 Sum_probs=98.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+++|++|+|||||+++|++..-. . ..+ |+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~---------------------------~-----~~~--t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV---------------------------T-----TIP--TIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS---------------------------C-----CCC--CSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC---------------------------c-----ccC--cCceeEEEEEECCEEE
Confidence 47999999999999999999843110 0 011 2222233455677899
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccccch
Q 005973 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 347 ~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~~e 423 (666)
.||||||+.+|...+..++..+|++|+|+|++.+.. +.....+...++.. .++| +|+|+||+|+.+. .
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~ 117 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER------VNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA--M 117 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG------HHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC--C
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCC--C
Confidence 999999999998888888999999999999987521 11112222222221 2566 9999999999752 2
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++...+... .+....++++++||++|.|+.+
T Consensus 118 ~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 118 NAAEITDKLGLH----SLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp CHHHHHHHTTGG----GCSSCCEEEEECBTTTTBTHHH
T ss_pred CHHHHHHHhCcc----cccCccEEEEEcccCCCcCHHH
Confidence 223333333211 1112345789999999999966
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=164.60 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
....++|+|+|++|+|||||+++|++..... ......|.+.......++..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 75 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------------NISATLGVDFQMKTLIVDGE 75 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------------CEEEEEEETTE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------------cCCCCccceeEEEEEEECCE
Confidence 3467999999999999999999998532100 00111233333333444444
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~ 419 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.+... ......+..+.. .++| +|+|+||+|+..
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~-------~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF-------LNIREWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHH-------HTHHHHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHH-------HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 56799999999999999988899999999999999875311 111222333333 2667 999999999973
Q ss_pred ccc--hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~--e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .......++...+.+..+ ++++++||++|.|+.+
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 148 TAATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNIVE 186 (199)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred ccccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCHHH
Confidence 210 000001222333443444 4789999999999966
No 79
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=7.5e-18 Score=162.26 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=98.5
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE
Q 005973 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 260 ~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~ 339 (666)
.....+.++|+|+|++|+|||||+++|++..- .......|.+ ...+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~------------------------------~~~~~t~~~~----~~~~ 60 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV------------------------------VHTSPTIGSN----VEEI 60 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC------------------------------EEEECCSSSS----CEEE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC------------------------------CccCCcCcee----eEEE
Confidence 34455679999999999999999999994311 0001111222 1234
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEeccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMD 416 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~D 416 (666)
...+..+.||||||+.+|...+..++..+|++|+|+|++.... +.........++. ..++| +|+|+||+|
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~NK~D 133 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER------ISVTREELYKMLAHEDLRKAG-LLIFANKQD 133 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT------HHHHHHHHHHHHTCGGGTTCE-EEEEEECTT
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHhChhhCCCe-EEEEEECCC
Confidence 4467899999999999998888888899999999999987521 1112222223333 24566 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+... ...+++.+.+. ...+....++++++||++|.|+.+
T Consensus 134 l~~~--~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 134 VKEC--MTVAEISQFLK----LTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp STTC--CCHHHHHHHTT----GGGCCSSCEEEEECBTTTTBTHHH
T ss_pred cccC--CCHHHHHHHhC----cccccCCceEEEEccCCCCcCHHH
Confidence 9742 11222333222 111222345889999999999966
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.73 E-value=2e-17 Score=160.17 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=103.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++..... ......|++.......+....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 70 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTVYRHDKR 70 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCCCEEEEEEEEETTEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CcCCceeEEEEEEEEEECCeE
Confidence 356899999999999999999998532110 001123444444444444456
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+...
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F----AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 789999999999988888888899999999999987521 1 1222333344443 566 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .+++..+.+.++ ++++++||++|.|+.+
T Consensus 143 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 143 RVVP----AEDGRRLADDLG-----FEFFEASAKENINVKQ 174 (189)
T ss_dssp CCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred cCCC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 2211 123334444444 3789999999999976
No 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=1.5e-17 Score=161.00 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=96.9
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
...++.++|+|+|++|+|||||+++|++.... ....+.++.+.....+.
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~ 63 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFP-------------------------------DRTEATIGVDFRERAVD 63 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCC-------------------------------SSCCCCCSCCEEEEEEE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCCcceEEEEEEEE
Confidence 34457899999999999999999999843111 11112223333333333
Q ss_pred cC--CeEEEEEeCCCccchH-HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 341 SK--NYHVVVLDSPGHKDFV-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 341 ~~--~~~i~liDTPGh~~f~-~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
.. ...+.||||||+.+|. .....++..+|++|+|+|++.... +..+.....+....+...++| +|+|+||+|+
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 139 (189)
T 1z06_A 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---FHSLPAWIEECKQHLLANDIP-RILVGNKCDL 139 (189)
T ss_dssp ETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---HHTHHHHHHHHHHHCCCSCCC-EEEEEECTTC
T ss_pred ECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 33 4689999999999887 667777889999999999987421 111111111111111123566 9999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccC---CCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN---QNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG---~nI~e 461 (666)
....+.. .++...+.+..+ ++++++||++| .|+.+
T Consensus 140 ~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 140 RSAIQVP----TDLAQKFADTHS-----MPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp GGGCCSC----HHHHHHHHHHTT-----CCEEECCSSSGGGGSCHHH
T ss_pred cccceeC----HHHHHHHHHHcC-----CEEEEEeCCcCCcccCHHH
Confidence 7432211 122333333333 47899999999 77754
No 82
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.73 E-value=3e-17 Score=157.26 Aligned_cols=154 Identities=12% Similarity=0.109 Sum_probs=97.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.++.++|+|+|++|+|||||+++|++.... ... ..++.......+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~-~~t~~~~~~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-------------------------------EDY-EPTKADSYRKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------CSC-CTTCCEEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-------------------------------CcC-CCccceEEEEEEEEC
Confidence 356799999999999999999999953210 000 111111112222333
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 --~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.... +........+........++| +|+|+||+|+...
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 138 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FAATADFREQILRVKEDENVP-FLLVGNKSDLEDK 138 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 3578999999999999888888999999999999986421 111111111111111112667 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... .++..+++.++ ++++++||++|.|+.+
T Consensus 139 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 139 RQVSV----EEAKNRAEQWN-----VNYVETSAKTRANVDK 170 (187)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred CccCH----HHHHHHHHHcC-----CeEEEeCCCCCCCHHH
Confidence 22222 23334444444 4789999999999976
No 83
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.73 E-value=3.6e-17 Score=161.59 Aligned_cols=154 Identities=23% Similarity=0.272 Sum_probs=94.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
.+.++|+|+|++|+|||||+++|++.... +....++.+.....+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 52 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR--------------------------------DTQTSITDSSAIYKVNNNR 52 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC--------------------------------CBCCCCSCEEEEEECSSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc--------------------------------cccCCcceeeEEEEecCCC
Confidence 35689999999999999999999953200 011122223222222222
Q ss_pred CeEEEEEeCCCccchHH-HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH----HHHH-----cCCCcEEEEE
Q 005973 343 NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ----LIRS-----FGVDQLIVAV 412 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~-~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~----ll~~-----lgip~iIVVi 412 (666)
...+.||||||+.+|.. .+..++..+|++|+|+|++.. .....+... ++.. .++| +|+|+
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~ 122 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSPS-LLIAC 122 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEE
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCCC-EEEEE
Confidence 67899999999999987 556668899999999999762 111222222 2211 2456 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhh---------------------c-------CcCC--CCCcEEEeecccC------
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRS---------------------C-------GFKD--ASLTWIPLSALEN------ 456 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~---------------------~-------~~~~--~~i~iIpvSA~tG------ 456 (666)
||+|+.... ..+.+.+.+...+.. . .+.. ..++|+++||++|
T Consensus 123 nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~ 200 (214)
T 2fh5_B 123 NKQDIAMAK--SAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGS 200 (214)
T ss_dssp ECTTSTTCC--CHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------C
T ss_pred ECCCCCCcc--cHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccc
Confidence 999997532 233344444433320 0 0100 1578999999999
Q ss_pred CCccc
Q 005973 457 QNLVT 461 (666)
Q Consensus 457 ~nI~e 461 (666)
.|+.+
T Consensus 201 ~gv~~ 205 (214)
T 2fh5_B 201 ADIQD 205 (214)
T ss_dssp CBCHH
T ss_pred cChHH
Confidence 99965
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=2.8e-17 Score=155.18 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=92.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--C
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~ 342 (666)
..++|+|+|++|+|||||+++|++... .....+.++.+.....+.. .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 53 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-------------------------------NDKHITTLGASFLTKKLNIGGK 53 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-------------------------------CSSCCCCCSCEEEEEEEESSSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CcCCCCccceEEEEEEEEECCE
Confidence 468999999999999999999995311 0111122333333333333 4
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~ 419 (666)
...+.||||||+.++.......+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.+
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F----QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 4578899999999998888888899999999999987521 1 112222222222 3566 899999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... ++...+++..+ ++++++||++|.|+.+
T Consensus 126 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 126 ERHVSI----QEAESYAESVG-----AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp GCCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred ccccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 322111 23333444443 4789999999999966
No 85
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=5.3e-17 Score=158.84 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=101.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++..... ......|++.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------------CCCCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCccceeEEEEEEEECCeEE
Confidence 46899999999999999999998431100 0011224444444444444457
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+.. .++| +|+|+||+|+....
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F----NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc
Confidence 89999999999999999999999999999999987521 1 112223333333 2555 99999999997532
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .++..+.+.++ ++++++||++|.|+.+
T Consensus 130 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 130 VVSS----ERGRQLADHLG-----FEFFEASAKDNINVKQ 160 (203)
T ss_dssp CSCH----HHHHHHHHHHT-----CEEEECBTTTTBSSHH
T ss_pred ccCH----HHHHHHHHHCC-----CeEEEEECCCCCCHHH
Confidence 2111 22333444444 4789999999999976
No 86
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=1.4e-17 Score=171.99 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=104.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
|+.++|+|+|++|+|||||+++|++... .....+|+|++.....+...+
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 49 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYRE 49 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECC
Confidence 3568999999999999999999984311 122346888888888888889
Q ss_pred eEEEEEeCCCccchHH------HHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC-CCcEEEEEec
Q 005973 344 YHVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNK 414 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~------~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVViNK 414 (666)
..+.||||||+.+|.. ....++ ..+|++|+|+|++.. ......+..+..++ +| +|+|+||
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~~~~~~~~~~~~~~~~p-~ilv~NK 118 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL----------MRNLFLTLELFEMEVKN-IILVLNK 118 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc----------hhhHHHHHHHHhcCCCC-EEEEEEC
Confidence 9999999999887643 222222 579999999999863 23444455566677 77 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+......... ...+.. .++ ++++++||++|.|+.+
T Consensus 119 ~Dl~~~~~~~~~--~~~l~~---~lg-----~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 119 FDLLKKKGAKID--IKKMRK---ELG-----VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp HHHHHHHTCCCC--HHHHHH---HHS-----SCEEECBGGGTBTHHH
T ss_pred hhcCcccccHHH--HHHHHH---HcC-----CcEEEEEeCCCCCHHH
Confidence 998742111111 223333 234 4789999999999966
No 87
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=2.8e-17 Score=154.73 Aligned_cols=149 Identities=14% Similarity=0.167 Sum_probs=97.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--C
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~ 342 (666)
..++|+|+|++|+|||||+++|++.... ....+.++.+.....+.. .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 52 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT-------------------------------KDYKKTIGVDFLERQIQVNDE 52 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-------------------------------CCSSCCCSSSEEEEEEEETTE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCceEEEEEEEEEEECCE
Confidence 4689999999999999999999843110 011122222333333333 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|...+...+..+|++|+|+|++.... +. .....+..+.. .++| +++|+||+|+...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---FE----AISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---HH----THHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---HH----HHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 4578999999999988777888899999999999987521 11 11122222222 3666 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... +++..+++.++ ++++++||++|.|+.+
T Consensus 125 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 125 SCIKN----EEAEGLAKRLK-----LRFYRTSVKEDLNVSE 156 (168)
T ss_dssp CSSCH----HHHHHHHHHHT-----CEEEECBTTTTBSSHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 22111 23334444444 4789999999999966
No 88
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=159.93 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=98.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+..++|+|+|++|+|||||+++|++.... .. ..+++.+.....+...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~------------------------------~~~t~~~~~~~~~~~~ 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--ED------------------------------YEPTKADSYRKKVVLD 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TT------------------------------CCTTCCEEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CC------------------------------CCCccceEEEEEEEEC
Confidence 456799999999999999999999953210 00 0111111112223333
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHHH---cCCCcEEEEEeccc
Q 005973 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS---FGVDQLIVAVNKMD 416 (666)
Q Consensus 343 --~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~~---lgip~iIVViNK~D 416 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.... +. .....+. +... .++| +|+|+||+|
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA----ATADFREQILRVKEDENVP-FLLVGNKSD 130 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH----HHHHHHHHHHHHTTCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCC-EEEEEeccC
Confidence 3578899999999999988888999999999999987421 11 1122222 2222 2667 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+........ .++..+++..+ ++++++||++|.|+.+
T Consensus 131 l~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 131 LEDKRQVSV----EEAKNRAEQWN-----VNYVETSAKTRANVDK 166 (206)
T ss_dssp CGGGCCSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHH
T ss_pred ccccccccH----HHHHHHHHHhC-----CeEEEEeCCCCCCHHH
Confidence 975322222 23333444444 4789999999999976
No 89
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=1.6e-17 Score=156.63 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=96.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--C
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~--~ 343 (666)
.++|+|+|++|+|||||+++|++.... ....++++.+.....+... .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-------------------------------PSFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-------------------------------C-------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------CCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999953110 1112333444444444444 4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +++|+||+|+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 123 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F----TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETR 123 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcC
Confidence 678999999999988888888899999999999987521 1 1122233333332 566 9999999999431
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .++...+.+.++ ++++++||++|.|+.+
T Consensus 124 -~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 124 -VVT----ADQGEALAKELG-----IPFIESSAKNDDNVNE 154 (170)
T ss_dssp -CSC----HHHHHHHHHHHT-----CCEEECBTTTTBSHHH
T ss_pred -ccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 111 122333444444 4689999999999976
No 90
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=1.7e-17 Score=170.54 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=104.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+++|++|+|||||+++|++... .....+|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~-------------------------------~~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ-------------------------------YVANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCceEEEEEEEEEECC
Confidence 3568999999999999999999984311 122236889888888888888
Q ss_pred eEEEEEeCCCccchHH------HHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 344 YHVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~------~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
..+.||||||+..+.. ....++ ..+|++|+|+|++... .....+..+..+++| +|+|+||+
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~----------~~~~~~~~l~~~~~p-vilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE----------QSLYLLLEILEMEKK-VILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH----------HHHHHHHHHHTTTCC-EEEEEECH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh----------hHHHHHHHHHhcCCC-EEEEEECc
Confidence 9999999999877642 112222 5799999999998741 223344556667888 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+........ .+..+.+.++ ++++++||++|.|+.+
T Consensus 121 Dl~~~~~i~~-----~~~~l~~~lg-----~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 121 DEAKKTGMKI-----DRYELQKHLG-----IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp HHHHHTTCCB-----CHHHHHHHHC-----SCEEECCTTTCTTHHH
T ss_pred CCCCccchHH-----HHHHHHHHcC-----CCEEEEEeeCCcCHHH
Confidence 9874211111 1222333334 4789999999999976
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.8e-17 Score=163.01 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=99.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++... .....++++.+.....+...+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF-------------------------------NPSFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC-------------------------------CCSSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CcccCCcccceEEEEEEEECC
Confidence 3568999999999999999999984311 111223344444444555555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv 418 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 138 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F----TNIKQWFKTVNEHANDEAQ-LLLVGNKSDME 138 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H----HTHHHHHHHHHHHTTTCSE-EEEEEECTTCS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 678999999999988878888899999999999987521 1 1112233333332 566 99999999994
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. .... .+...+.+.++ ++++++||++|.|+.+
T Consensus 139 ~~-~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 139 TR-VVTA----DQGEALAKELG-----IPFIESSAKNDDNVNE 171 (213)
T ss_dssp SC-CSCH----HHHHHHHHHHT-----CCEEECBTTTTBSSHH
T ss_pred cc-ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 21 1111 22233333444 3689999999999976
No 92
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=3.7e-17 Score=155.78 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=96.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
....++|+|+|++|+|||||+++|++.... ....+.+..... ..+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~t~~~~~~-~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFV-------------------------------SDYDPTIEDSYT-KICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCC-------------------------------SSCCTTCCEEEE-EEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCc-------------------------------cccCCCcCceEE-EEEEEC
Confidence 346789999999999999999999953110 000111111111 223333
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 --~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|.......+..+|++|+|+|++.... +..+.....+.+......++| +|+|+||+|+...
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 129 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---FNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQ 129 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---HHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 3578899999999988777888889999999999987421 111111111111222223667 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... .+...+....+ ++++++||++|.|+.+
T Consensus 130 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 130 RQVPR----SEASAFGASHH-----VAYFEASAKLRLNVDE 161 (181)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 22111 12223333333 4789999999999976
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=2.6e-17 Score=158.89 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=99.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+++|++|+|||||+++|++... .......|.+ ...+...+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~------------------------------~~~~~t~g~~----~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI------------------------------SHITPTQGFN----IKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC------------------------------EEEEEETTEE----EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC------------------------------CcccCcCCeE----EEEEEECC
Confidence 3568999999999999999999983210 0011122322 23445568
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.... +.....+...++.. .++| +|+|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR------FEETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG------HHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH------HHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 899999999999999888888999999999999987521 11111122222222 3566 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.+.. .......++++++||++|+|+.+
T Consensus 133 --~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 133 --APASEIAEGLNL----HTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp --CCHHHHHHHTTG----GGCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhCc----hhccCCceEEEEccCCCCCCHHH
Confidence 122233332221 11122345789999999999966
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=1.9e-17 Score=159.61 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=100.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
.+.++|+++|++|+|||||+++|++.. .. ...+ |+......+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~------------------------------~~~~--t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD------------------------------TISP--TLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS------------------------------SCCC--CSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC------------------------------cccc--cCccceEEEEECC
Confidence 356899999999999999999998432 00 0001 2222333455578
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+.. +.........++.. .++| +|+|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR------MQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG------HHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998888888999999999999987521 11111222222222 3566 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.+.. ..+....++++++||++|.|+.+
T Consensus 135 --~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 135 --LSCNAIQEALEL----DSIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp --CCHHHHHHHTTG----GGCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhCh----hhccCCceEEEEeeCCCCCCHHH
Confidence 222333332221 11112346899999999999966
No 95
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.3e-17 Score=161.91 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=105.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|+.|+|||||+++|++..... ......|++.......+....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 71 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRHEKR 71 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEETTTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEECCEE
Confidence 457899999999999999999999532110 011123445555555666678
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|.......+..+|++|+|+|++.... + ......+..+.. .++| +|+|+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 143 (191)
T 3dz8_A 72 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F----NAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEE 143 (191)
T ss_dssp EEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 899999999999999999999999999999999986421 1 122233333443 3556 9999999998743
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... .+...+.+.++ ++++++||++|.|+.+
T Consensus 144 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 144 RVVPT----EKGQLLAEQLG-----FDFFEASAKENISVRQ 175 (191)
T ss_dssp CCSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 22211 22333344444 4789999999999976
No 96
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=7.6e-18 Score=165.00 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=98.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
...++|+|+|++|+|||||+++|++.... ....++++.+.....+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 54 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVMVDD 54 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEECC
Confidence 45789999999999999999999853211 111233344444444444
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEecc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVViNK~ 415 (666)
....+.||||||+.+|...+..++..+|++|+|+|++.+... .. .......+... .++| +|+|+||+
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~~---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 127 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF---KT---LDSWRDEFLIQASPRDPENFP-FVVLGNKI 127 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHH---HT---HHHHHHHHHHHHCCSSGGGSC-EEEEEECT
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHH---HH---HHHHHHHHHHhcccccCCCCc-EEEEEECC
Confidence 346889999999999887777888999999999999875311 11 11111112222 3566 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+... .... +++..+.... ..++++++||++|.|+.+
T Consensus 128 Dl~~~-~~~~----~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 128 DLENR-QVAT----KRAQAWCYSK----NNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp TSSCC-CSCH----HHHHHHHHHT----TSCCEEECBTTTTBSHHH
T ss_pred CCccc-ccCH----HHHHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 99732 1111 2222333211 235789999999999976
No 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.72 E-value=4.8e-17 Score=156.14 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=99.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
...+.++|+|+|++|+|||||+++|+..... ....+.+.... ...+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-------------------------------~~~~~t~~~~~-~~~~~~ 61 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFV-------------------------------DDYDPTIEDSY-LKHTEI 61 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SCCCTTCCEEE-EEEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCCcccee-EEEEEe
Confidence 3456799999999999999999999943110 00111112221 222333
Q ss_pred CC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 342 KN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
.+ ..+.||||||+.+|......++..+|++|+|+|++.+.. +..+.....+.+......++| +|+|+||+|+..
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FEHVDRFHQLILRVKDRESFP-MILVANKVDLMH 137 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCST
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchh
Confidence 33 456679999999998888888899999999999987521 211111222222222335667 999999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecc-cCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~-tG~nI~e 461 (666)
...... +++..+.+.++ ++++++||+ +|.|+.+
T Consensus 138 ~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 138 LRKVTR----DQGKEMATKYN-----IPYIETSAKDPPLNVDK 171 (183)
T ss_dssp TCCSCH----HHHHHHHHHHT-----CCEEEEBCSSSCBSHHH
T ss_pred ccCcCH----HHHHHHHHHhC-----CeEEEeccCCCCCCHHH
Confidence 222211 23334444444 468999999 9999976
No 98
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.7e-17 Score=152.02 Aligned_cols=149 Identities=18% Similarity=0.112 Sum_probs=95.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+++|++|+|||||+++|++..... . .....+.+.. ....+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~---------------------------~~~t~~~~~~-~~~~~~~~~~~ 52 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--S---------------------------YIPTVEDTYR-QVISCDKSICT 52 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--S---------------------------CCCCSCEEEE-EEEEETTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--C---------------------------CCCCccccEE-EEEEECCEEEE
Confidence 5789999999999999999999421100 0 0000111111 11222333467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEeccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViNK~Dlv~~ 420 (666)
+.||||||+.+|......++..+|++|+|+|++..... ......+..+.. .++| +++|+||+|+...
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL-------EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHH-------HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHH-------HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 89999999999998888889999999999999864211 111222222322 2567 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... .+...+....+ ++++++||++|.|+.+
T Consensus 125 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 125 REVQS----SEAEALARTWK-----CAFMETSAKLNHNVKE 156 (172)
T ss_dssp CCSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHhC-----CeEEEecCCCCcCHHH
Confidence 22111 12222333333 4789999999999965
No 99
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=3.4e-17 Score=158.34 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEE-----E
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA-----Y 338 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~-----~ 338 (666)
...++|+|+|++|+|||||++.|.+......... . .........|+...+. .
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~---------------------~--~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGE---------------------M--VSLATEDERTLFFDFLPLDIGE 68 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCC---------------------C--EEEECSSCEEEEEEECCSSCCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccccc---------------------c--cccccccccceeeeeccccccc
Confidence 3568999999999999999977764211100000 0 0000001123322222 1
Q ss_pred EecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEe
Q 005973 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVN 413 (666)
Q Consensus 339 ~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViN 413 (666)
++.....+.||||||+++|...+..++..+|++|+|+|++.+...... ........++.. .++| +|+|+|
T Consensus 69 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~----~s~~~l~~~l~~~~~~~~~~p-iilv~N 143 (198)
T 3t1o_A 69 VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANA----ESMRNMRENLAEYGLTLDDVP-IVIQVN 143 (198)
T ss_dssp SSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHH----HHHHHHHHHHHHTTCCTTSSC-EEEEEE
T ss_pred ccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhH----HHHHHHHHHHHhhccccCCCC-EEEEEE
Confidence 223456799999999999999999999999999999999854221110 011122233333 3566 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|+... .. .+++..+++..++ .+++++||++|.|+.+
T Consensus 144 K~Dl~~~--~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 144 KRDLPDA--LP----VEMVRAVVDPEGK----FPVLEAVATEGKGVFE 181 (198)
T ss_dssp CTTSTTC--CC----HHHHHHHHCTTCC----SCEEECBGGGTBTHHH
T ss_pred chhcccc--cC----HHHHHHHHHhcCC----ceEEEEecCCCcCHHH
Confidence 9999742 12 2344445544442 2789999999999976
No 100
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=1.6e-17 Score=161.80 Aligned_cols=150 Identities=15% Similarity=0.055 Sum_probs=98.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|++|+|||||+++|++.... + ...|+......+..++.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--------------------------------~--~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--------------------------------T--LQPTWHPTSEELAIGNI 67 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--------------------------------C--CCCCCSCEEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--------------------------------c--cccCCCCCeEEEEECCE
Confidence 4578999999999999999999843110 0 01122223345566778
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.++...+..++..+|++|+|+|++.+.. + .....+...++. ..++| +|+|+||+|+..
T Consensus 68 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~-- 138 (190)
T 1m2o_B 68 KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---F---DEARVELDALFNIAELKDVP-FVILGNKIDAPN-- 138 (190)
T ss_dssp EEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT--
T ss_pred EEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---H---HHHHHHHHHHHcchhhcCCC-EEEEEECCCCcC--
Confidence 99999999999988777778899999999999987521 1 111122222222 24566 999999999974
Q ss_pred chhhhHHHHHHhhhhhhcC-------cCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCG-------FKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~-------~~~~~i~iIpvSA~tG~nI~e 461 (666)
....+++ .+.+.... .....++++++||++|+|+.+
T Consensus 139 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 139 AVSEAEL----RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp CCCHHHH----HHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred CCCHHHH----HHHhCCccccccccccccceEEEEEeECCcCCCHHH
Confidence 1122223 23322211 011346799999999999966
No 101
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.4e-17 Score=159.51 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=101.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
..+.++|+|+|++|+|||||+++|++.... .......|++.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 62 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFD-----------------------------PELAATIGVDFKVKTISVDGN 62 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------ccCCCccceEEEEEEEEECCe
Confidence 345789999999999999999999853110 001112244444444444445
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv 418 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+.. .++| +|+|+||+|+.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~ 134 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F----VKLDNWLNELETYCTRNDIV-NMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H----HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCc
Confidence 6789999999999998888888999999999999987521 1 111222233332 2455 89999999995
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... . .++...+++..+ ++++++||++|.|+.+
T Consensus 135 ~~~~-~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 135 NREV-D----RNEGLKFARKHS-----MLFIEASAKTCDGVQC 167 (195)
T ss_dssp SCCS-C----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccc-C----HHHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 3211 1 122333444433 4789999999999966
No 102
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.72 E-value=2e-17 Score=155.84 Aligned_cols=148 Identities=18% Similarity=0.076 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+|+|++|+|||||+++|++.... ......|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG------------------------------PEAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc------------------------------CCCCccccceE-EEEEECCEEEE
Confidence 578999999999999999999732111 00112334443 22233445567
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccccc
Q 005973 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 346 i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~~~ 421 (666)
+.||||||+.+|......++..+|++|+|+|++.... + ......+..+.. .++| +|+|+||+|+.+..
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F----EKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---H----HHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc
Confidence 8899999999998888888899999999999987421 1 112222222222 3567 99999999997532
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .+...+....+ ++++++||++|.|+.+
T Consensus 123 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 123 EVSV----DEGRACAVVFD-----CKFIETSAALHHNVQA 153 (166)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECBGGGTBSHHH
T ss_pred ccCH----HHHHHHHHHhC-----CcEEEeccCCCCCHHH
Confidence 2111 12222333333 4789999999999976
No 103
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=7.5e-17 Score=150.74 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=95.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|+.|+|||||+++|++....- .. ....+... .....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~---------------------------~~~~~~~~-~~~~~~~~~~~ 51 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--EC---------------------------DPTIEDSY-RKQVVIDGETC 51 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS--CC---------------------------CTTCCEEE-EEEEEETTEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc--cc---------------------------CCccceEE-EEEEEECCEEE
Confidence 46899999999999999999998531110 00 00001111 11122223345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc----CCCcEEEEEeccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iIVViNK~Dlv~~ 420 (666)
.+.||||||+.++...+..++..+|++|+|+|+..... + ....+.+..+... ++| +++|+||+|+...
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~----~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F----EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAAR 123 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhc
Confidence 68899999999998888888899999999999986421 1 1122223323222 677 9999999998752
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .+++..+.+..+ ++++++||++|.|+.+
T Consensus 124 -~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 124 -TVE----SRQAQDLARSYG-----IPYIETSAKTRQGVED 154 (166)
T ss_dssp -CSC----HHHHHHHHHHHT-----CCEEEECTTTCTTHHH
T ss_pred -ccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 111 123333444444 3689999999999966
No 104
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=2.1e-17 Score=158.86 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=93.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
+.++|+|+|++|+|||||+++|++..... ...+++.+.....+...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~ 50 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD--------------------------------EYDPTIEDSYRKQVVIDGE 50 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCC--------------------------------CCCTTCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCC--------------------------------CCCCCchheEEEEEEECCc
Confidence 46899999999999999999999532100 00111222222233333
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv 418 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.... +. .....+..+.. .++| +|+|+||+|+.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE----DIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---HH----HHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 3457789999999998888888899999999999987421 11 11122222222 3566 99999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .. .+++..+.+.++ ++++++||++|.|+.+
T Consensus 123 ~~~--~~---~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 123 SRT--VD---TKQAQDLARSYG-----IPFIETSAKTRQGVDD 155 (189)
T ss_dssp SCS--SC---HHHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred ccc--cC---HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 421 11 122333333334 4689999999999976
No 105
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=4.1e-17 Score=160.17 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
...++|+|+|++|+|||||+++|++... .....++++.+.....+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY-------------------------------TNDYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC-------------------------------CTTCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCcccceeEEEEEEECC
Confidence 3468999999999999999999985321 11112333333333344443
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 005973 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 -~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv 418 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 126 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F----NGVKMWLQEIDRYATSTVL-KLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 3579999999999998888888899999999999987521 1 1122223333332 455 89999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....... .+...+....+ ++++++||++|.|+.+
T Consensus 127 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 127 DKRVVEY----DVAKEFADANK-----MPFLETSALDSTNVED 160 (206)
T ss_dssp TTCCSCH----HHHHHHHHHTT-----CCEEECCTTTCTTHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 5322111 22233333333 4789999999999976
No 106
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=5e-17 Score=158.59 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=95.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|+... . . +.. .|+......+...+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~-------------------------~-----~~~--~t~~~~~~~~~~~~ 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--I-------------------------V-----TTI--PTIGFNVETVEYKN 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--C-------------------------E-----EEE--EETTEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--c-------------------------c-----ccC--CcCceeEEEEEECC
Confidence 456899999999999999999997321 0 0 001 13333344566678
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|...+...+..+|++|+|+|++.+.. +.....+...++.. .++| +|+|+||+|+...
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s------~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 145 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER------VQESADELQKMLQEDELRDAV-LLVFANKQDMPNA 145 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG------HHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCC
Confidence 999999999999988888888899999999999987521 11111222222221 2566 9999999999742
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++.+.+... ......++++++||++|.|+.+
T Consensus 146 --~~~~~i~~~~~~~----~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 146 --MPVSELTDKLGLQ----HLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp --CCHHHHHHHTTGG----GCSSCCEEEEECBTTTTBTHHH
T ss_pred --CCHHHHHHHhCcc----cccCCceEEEECcCCCcCCHHH
Confidence 2223333333221 1112346789999999999966
No 107
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=6.7e-17 Score=159.98 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=98.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--e
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--D 340 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~--~ 340 (666)
....++|+|+|++|+|||||+++|++... .....+.++.+.....+ .
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 70 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKF-------------------------------NPKFITTVGIDFREKRVVYN 70 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCC-------------------------------CCEEEEEEEEEEEEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCC-------------------------------CcCCCCceeEEEEEEEEEEC
Confidence 34579999999999999999999984211 11111222333333233 2
Q ss_pred cC----------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-------c
Q 005973 341 SK----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-------F 403 (666)
Q Consensus 341 ~~----------~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-------l 403 (666)
.. ...+.||||||+.+|...+...+..+|++|+|+|++... .......++.. .
T Consensus 71 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~ 140 (217)
T 2f7s_A 71 AQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----------SFLNVRNWMSQLQANAYCE 140 (217)
T ss_dssp C-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----------HHHHHHHHHHTCCCCCTTT
T ss_pred CccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcC
Confidence 22 567999999999999988888999999999999998742 11111122322 2
Q ss_pred CCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 404 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 404 gip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
++| +|+|+||+|+....... ..++..+.+.++ ++++++||++|.|+.+
T Consensus 141 ~~p-iilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 141 NPD-IVLIGNKADLPDQREVN----ERQARELADKYG-----IPYFETSAATGQNVEK 188 (217)
T ss_dssp CCE-EEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTHHH
T ss_pred CCC-EEEEEECCccccccccC----HHHHHHHHHHCC-----CcEEEEECCCCCCHHH
Confidence 455 99999999997422111 123334444444 4789999999999976
No 108
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=2.2e-17 Score=158.17 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=96.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+|+|++|+|||||+++|+..... . ......+.+. .....+.....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~---------------------------~~~~t~~~~~-~~~~~~~~~~~ 54 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--D---------------------------SYDPTIENTF-TKLITVNGQEY 54 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--S---------------------------CCCTTCCEEE-EEEEEETTEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--C---------------------------CCCCCccccE-EEEEEECCEEE
Confidence 4689999999999999999999943210 0 0001122222 22222222336
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.||||||+.+|......++..+|++|+|+|++.... +..+.....+.+..+...++| +|+|+||+|+.......
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~ 130 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVIS 130 (181)
T ss_dssp EEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSC
T ss_pred EEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceec
Confidence 77899999999987777777889999999999987421 111111112222222234677 99999999986432221
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+++..+.+.++ ++++++||++|.|+.+
T Consensus 131 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 131 ----YEEGKALAESWN-----AAFLESSAKENQTAVD 158 (181)
T ss_dssp ----HHHHHHHHHHTT-----CEEEECCTTSHHHHHH
T ss_pred ----HHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Confidence 223344444444 4789999999999976
No 109
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.71 E-value=3.6e-17 Score=163.82 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=97.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE--
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-- 339 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~-- 339 (666)
.+++.++|+|+|..++|||||+++|+... +..+..+.+..+.....+
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~-------------------------------f~~~~~~Tig~d~~~k~~~~ 57 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDS-------------------------------FDNTYQATIGIDFLSKTMYL 57 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSC-------------------------------CC----------CEEEEEEC
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCC-------------------------------CCCCcCCccceEEEEEEEEe
Confidence 34567899999999999999999998421 111222333333333333
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~ 419 (666)
......+.||||+|+++|......+++.++++|+|+|.+.... |..+. .....+.....-++| +|+|.||+|+..
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~~i~-~~~~~i~~~~~~~~p-iilVgNK~Dl~~ 132 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQQTT-KWIDDVRTERGSDVI-IMLVGNKTDLAD 132 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HHTHH-HHHHHHHHHHTTSSE-EEEEEECTTCGG
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HHHHH-HHHHHHHHhcCCCCe-EEEEeeccchHh
Confidence 3345678899999999999988889999999999999987532 22211 111112112223566 999999999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...- ..++...+.+.++ ++|+++||++|.||.+
T Consensus 133 ~r~V----~~~e~~~~a~~~~-----~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 133 KRQV----SIEEGERKAKELN-----VMFIETSAKAGYNVKQ 165 (216)
T ss_dssp GCCS----CHHHHHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred cCcc----cHHHHhhHHHHhC-----CeeEEEeCCCCcCHHH
Confidence 2111 1233444555555 4789999999999976
No 110
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=1.8e-17 Score=174.20 Aligned_cols=149 Identities=28% Similarity=0.290 Sum_probs=102.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+..+|+|+|++|+|||||+|+|++....+.. ..+++|.+.....+...+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s------------------------------~~~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS------------------------------RKAQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECC------------------------------CCSSCCSSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccC------------------------------CCCCcceeeEEEEEEECCe
Confidence 4567999999999999999999964322111 1234444444445566788
Q ss_pred EEEEEeCCCcc-chH--------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 345 HVVVLDSPGHK-DFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 345 ~i~liDTPGh~-~f~--------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
+++|+||||+. ... .....++..+|++++|+|+.. + ..++.+.+..+...+.| +|+|+||+
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~-------~~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR--W-------TPDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC--C-------CHHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC--C-------CHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 99999999987 322 223455677999999999975 1 34666677777767888 89999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+... ... +...+..+.+.+++ ..++++||++|.|+.+
T Consensus 127 D~~~~-~~~---~~~~l~~l~~~~~~----~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 127 DNVQE-KAD---LLPHLQFLASQMNF----LDIVPISAETGLNVDT 164 (301)
T ss_dssp TTCCC-HHH---HHHHHHHHHTTSCC----SEEEECCTTTTTTHHH
T ss_pred ccCcc-HHH---HHHHHHHHHHhcCc----CceEEEECCCCCCHHH
Confidence 99741 222 33334444433443 2689999999999965
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=4.9e-17 Score=156.77 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=101.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
+++.++|+|+|++|+|||||+++|++.. ......+++|++.....+...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~-------------------------------~~~~~~~~~t~~~~~~~~~~~ 52 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGEN-------------------------------VYIGNWPGVTVEKKEGEFEYN 52 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTC-------------------------------EEEEECTTSCCEEEEEEEEET
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------ccccCCCCeeccceEEEEEeC
Confidence 3467899999999999999999998421 011233577777777777778
Q ss_pred CeEEEEEeCCCccchH------HHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 343 NYHVVVLDSPGHKDFV------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~------~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
+..+.||||||+.+|. .....++ ..+|++++|+|+... ......+..+...++| +|+|+||
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~p-iilv~nK 121 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNK 121 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHHHHHHHHHHTTTCC-EEEEEEC
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHHHHHHHHHHhcCCC-EEEEEEh
Confidence 8999999999988773 1222233 349999999998741 2334444555567787 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+..... .. ..+..+.+.++ ++++++||++|.|+.+
T Consensus 122 ~Dl~~~~~--~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 122 MDLAKSLG--IE---IDVDKLEKILG-----VKVVPLSAAKKMGIEE 158 (188)
T ss_dssp HHHHHHTT--CC---CCHHHHHHHHT-----SCEEECBGGGTBSHHH
T ss_pred hhcccccc--ch---HHHHHHHHHhC-----CCeEEEEecCCCCHHH
Confidence 99874211 11 11222222333 4689999999999966
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.71 E-value=1.6e-16 Score=159.33 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=99.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|.+|+|||||+++|++.... .....++|.+.....+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-------------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCcceeeeeeeeecCC
Confidence 45789999999999999999999843110 11124556666666667778
Q ss_pred eEEEEEeCCCc------cch---HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEE
Q 005973 344 YHVVVLDSPGH------KDF---VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh------~~f---~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVi 412 (666)
..+.||||||+ +.. ...+......+|++|+|+|++.... +. .....+.+..+... ++| +|+|+
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~l~~~~~~~p-iilv~ 149 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LT--IKEQINLFYSIKSVFSNKS-IVIGF 149 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SC--HHHHHHHHHHHHTCC-CCC-EEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cc--hHHHHHHHHHHHHhhcCCc-EEEEE
Confidence 89999999998 331 2223334677899999999987531 11 11223444445544 677 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+..... ........+..+....+ ..++++++||++|.|+.+
T Consensus 150 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 150 NKIDKCNMDS-LSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp ECGGGCC--C-CCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHH
T ss_pred eCcccCCchh-hHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHH
Confidence 9999975321 11222233444444333 125789999999999976
No 113
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=4.4e-17 Score=159.18 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=96.1
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCe--EEEEEEEE
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI--TMTVAVAY 338 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~Gi--Tid~~~~~ 338 (666)
....+.++|+|+|..|+|||||+++|++..... ...++ +.......
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 62 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------------ETLFLESTNKIYKDD 62 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG--------------------------------GGGGCCCCCSCEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--------------------------------ceeeeccccceeeee
Confidence 344567899999999999999999887421100 00111 11111112
Q ss_pred Ee-cCCeEEEEEeCCCccchHHHH---HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH--HHcCCCcEEEEE
Q 005973 339 FD-SKNYHVVVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI--RSFGVDQLIVAV 412 (666)
Q Consensus 339 ~~-~~~~~i~liDTPGh~~f~~~~---~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll--~~lgip~iIVVi 412 (666)
+. .....+.||||||+++|...+ ..+++.+|++|+|+|++.. +...+ ......+..+ ...++| +|+|+
T Consensus 63 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~----~~~~~~l~~~~~~~~~~p-iilv~ 136 (196)
T 3llu_A 63 ISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEAL----TRLHITVSKAYKVNPDMN-FEVFI 136 (196)
T ss_dssp ECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC-CHHHH----HHHHHHHHHHHHHCTTCE-EEEEE
T ss_pred ccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc-hHHHH----HHHHHHHHHHHhcCCCCc-EEEEE
Confidence 22 355789999999999987776 6788899999999999875 21111 1111222222 112566 99999
Q ss_pred eccccccccc--hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~--e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+..... +....+..+....+.........++++++||++ .|+.+
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 9999875211 112223222222222222222346899999999 99966
No 114
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=6.7e-17 Score=154.90 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+++|++|+|||||+++|++.... ... ....+... .....+....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~---------------------------~~t~~~~~-~~~~~~~~~~ 52 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEY---------------------------IPTVFDNY-SANVMVDGKP 52 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SSC---------------------------CCCSCCEE-EEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCC--CCc---------------------------CCccccee-EEEEEECCEE
Confidence 45789999999999999999999843110 000 00011111 1112223334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~ 421 (666)
..+.||||||+.+|......++..+|++|+|+|++.+.. +.......+..+... ++| +|+|+||+|+....
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS------FENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh------HHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccc
Confidence 567799999999998777778899999999999987521 111111233334433 677 99999999997531
Q ss_pred chhhhHH---------HHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i---------~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+.+ ..+...+.+.+++ .+++++||++|.|+.+
T Consensus 126 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (186)
T 1mh1_A 126 -DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 169 (186)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHH
Confidence 111111 1223333333332 4789999999999966
No 115
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=5.5e-17 Score=179.23 Aligned_cols=144 Identities=27% Similarity=0.304 Sum_probs=100.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+|+|++|+|||||+|+|++....+ .+..+|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999999543221 12246889888888888899999
Q ss_pred EEEeCCCccc---------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 347 ~liDTPGh~~---------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
.||||||+.. +...+..++..||++|+|+|+..+. .....+...+++..++| +|+|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~--------~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI--------TKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC--------CHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 9999999654 3455667789999999999998763 33445566677777888 9999999998
Q ss_pred ccccchhhhHHHHHH-hhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQL-GTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el-~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... . ..++ ..+. .+++. +++++||++|.|+.+
T Consensus 123 ~~~---~----~~~~~~~~~-~lg~~----~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 123 LRE---F----EREVKPELY-SLGFG----EPIPVSAEHNINLDT 155 (439)
T ss_dssp HHH---H----HHHTHHHHG-GGSSC----SCEECBTTTTBSHHH
T ss_pred ccc---c----HHHHHHHHH-hcCCC----CEEEEeccCCCCHHH
Confidence 631 0 1112 2222 34542 469999999999966
No 116
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=4.9e-17 Score=160.19 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=98.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-- 341 (666)
+..++|+|+|++|+|||||+++|+..... .....++.+.....+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~ 75 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--------------------------------GEYIPTVFDNYSANVMVDG 75 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--------------------------------C-CCCCSEEEEEEEEECC-
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--------------------------------CCcCCeecceeEEEEEECC
Confidence 56799999999999999999999943110 00111222222223333
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~ 419 (666)
....+.||||||+++|......++..+|++|+|+|++.+... .......+..+... ++| +|+|+||+|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 148 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCSSCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEechhhcc
Confidence 345566999999999988888889999999999999875211 11111233444444 677 999999999985
Q ss_pred ccchhhhHH---------HHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i---------~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ..+.+ ..+...+.+..++ .+++++||++|+|+.+
T Consensus 149 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 149 DKD-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
T ss_dssp CHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred chh-hhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHH
Confidence 321 11111 1233344444443 4689999999999966
No 117
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=2.1e-17 Score=182.45 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=97.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCce
Confidence 4689999999999999999998542221 1234688999888888888899
Q ss_pred EEEEeCCCcc--------chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 346 VVVLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 346 i~liDTPGh~--------~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
+.||||||+. .+...+..++..||++|+|+|+..+. .....+...+++..++| +|+|+||+|+
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~--------~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV--------TAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 9999999985 56666777888999999999998873 34556666777777888 9999999998
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... ++..+. .+++. +++++||++|.|+.+
T Consensus 124 ~~~~~--------~~~~~~-~lg~~----~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 124 TEMRA--------NIYDFY-SLGFG----EPYPISGTHGLGLGD 154 (436)
T ss_dssp -------------CCCSSG-GGSSC----CCEECBTTTTBTHHH
T ss_pred ccchh--------hHHHHH-HcCCC----CeEEEeCcCCCChHH
Confidence 74211 111222 33432 569999999999965
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.70 E-value=4.3e-17 Score=156.34 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=94.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
..+|+|+|++|+|||||+++|++....+ ....+++|.+.....+...+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAI------------------------------VTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSTTCCCSCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcce------------------------------eeCCCCceeceeeEEEEECCeE
Confidence 4789999999999999999998532111 1112456666555666667788
Q ss_pred EEEEeCCCccch--------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEec
Q 005973 346 VVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNK 414 (666)
Q Consensus 346 i~liDTPGh~~f--------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK 414 (666)
+.||||||+.++ .......+..+|++|+|+|++..... . ..+.+..+.. .++| +|+|+||
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~---~-----~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV---D-----PAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC---S-----HHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH---H-----HHHHHHHHHHhcccCCC-EEEEEEC
Confidence 999999998653 11233467889999999999876321 1 1122222222 2567 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+.+.... +... ...+++++||++|.|+.+
T Consensus 125 ~Dl~~~~~~-----------~~~~-----~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 125 ADITGETLG-----------MSEV-----NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp HHHHCCCCE-----------EEEE-----TTEEEEECCTTTCTTHHH
T ss_pred ccCCcchhh-----------hhhc-----cCCceEEEeCCCCCCHHH
Confidence 999642111 1111 135789999999999966
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=5.7e-17 Score=157.65 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEec
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDS 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~ 341 (666)
.+..++|+|+|++|+|||||+++|++.... ....+.+..... ...+..
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 68 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIP-------------------------------TAYVPTVFENFSHVMKYKN 68 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCSEEEEEEEEEETT
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CccCCeeeeeeEEEEEECC
Confidence 346799999999999999999999953210 001111111111 122223
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~ 419 (666)
....+.||||||+++|......++..+|++|+|+|++.... + .......+..+... ++| +|+|+||+|+..
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 141 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---F---DNISTKWEPEIKHYIDTAK-TVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTSE-EEEEEECGGGCC
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 34567899999999998888888999999999999987521 1 11112233333333 455 999999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ....+++..+.+.+++ ..++++||++|.|+.+
T Consensus 142 ~~~~--~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 142 DGSD--DVTKQEGDDLCQKLGC----VAYIEASSVAKIGLNE 177 (194)
T ss_dssp TTTT--CCCHHHHHHHHHHHTC----SCEEECBTTTTBSHHH
T ss_pred CCCC--cccHHHHHHHHHhcCC----CEEEEeecCCCCCHHH
Confidence 2111 1122344455555554 2389999999999976
No 120
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.9e-17 Score=162.29 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=96.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++..... ...+.++.+.....+...+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM-------------------------------DSKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCcccceeEEEEEEECC
Confidence 356899999999999999999999532111 1112223333333344444
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv 418 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+... ++| +|||+||+|+.
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~----~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 131 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y----ENCNHWLSELRENADDNVA-VGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H----HHHHHHHHHHHHHCC--CE-EEEEECCGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H----HHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 688999999999998888888899999999999987521 1 1122233333333 566 89999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....... .++..+.+..+ ++++++||++|.|+.+
T Consensus 132 ~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 132 HLRAVPT----EESKTFAQENQ-----LLFTETSALNSENVDK 165 (223)
T ss_dssp GGCCSCH----HHHHHHHHHTT-----CEEEECCCC-CCCHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 5222111 22333443333 4789999999999966
No 121
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.70 E-value=2.4e-17 Score=161.82 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=92.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
+.++|+++|++|+|||||+++|++..-. .. ..|+......+..++.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--------------------------------~~--~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--------------------------------QH--VPTLHPTSEELTIAGM 69 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC----------------------------------------CCCCCSCEEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--------------------------------cc--CCCCCceeEEEEECCE
Confidence 4578999999999999999999732100 00 0011111234455678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---HcCCCcEEEEEecccccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVViNK~Dlv~~~ 421 (666)
.+.||||||+.+|...+..++..+|++|+|+|++... .+ .....+...++. ..++| +|+|+||+|+..
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~-- 140 (198)
T 1f6b_A 70 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE---RL---LESKEELDSLMTDETIANVP-ILILGNKIDRPE-- 140 (198)
T ss_dssp EEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTT--
T ss_pred EEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCcccCCCc-EEEEEECCCccc--
Confidence 9999999999988877777889999999999998752 11 111222222222 24667 999999999974
Q ss_pred chhhhHHHHHHhhhhhhc-----CcC---CCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSC-----GFK---DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~-----~~~---~~~i~iIpvSA~tG~nI~e 461 (666)
....+++.+.+....... .+. ...++++++||++|+|+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 141 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 212222332222110000 011 1245799999999999966
No 122
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=8.3e-17 Score=177.82 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=104.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------------------------v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------------------------VSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECCCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc------------------------------cCCCCCCcCCceEEEEEECCE
Confidence 46899999999999999999999542211 122367888777777778888
Q ss_pred EEEEEeCCCccchHHH------------HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 345 HVVVLDSPGHKDFVPN------------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~------------~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
.+.+|||||+.++... ...++..+|++++|+|+..+. ..+....+.++...+.+ +|+|+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~--------~~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI--------TRQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEE
Confidence 9999999997543221 245667799999999998763 23445566667778888 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+........+++.+++...+..+. ..+++++||++|.|+.+
T Consensus 300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 344 (439)
T 1mky_A 300 NKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDR 344 (439)
T ss_dssp ECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHH
T ss_pred ECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHH
Confidence 9999985333224444445544433333 35789999999999976
No 123
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.5e-16 Score=153.74 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=87.8
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
...++.++|+++|+.|+|||||+++|++.... . .. .+++.+.....+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~-----------------------------~~-~~t~~~~~~~~~~ 63 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFV--D-----------------------------EY-DPTIEDSYRKQVV 63 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCC--S-----------------------------CC-CTTCCEEEEEEEE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCc--c-----------------------------cc-CCccceEEEEEEE
Confidence 34467799999999999999999999953110 0 00 0111111112233
Q ss_pred cC--CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEec
Q 005973 341 SK--NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNK 414 (666)
Q Consensus 341 ~~--~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK 414 (666)
.. ...+.||||||+.+|...+..++..+|++|+|+|+..... + ......+..+.. .++| +|+|+||
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~p-~ilv~nK 135 (190)
T 3con_A 64 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F----ADINLYREQIKRVKDSDDVP-MVLVGNK 135 (190)
T ss_dssp ETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHHTCSCCC-EEEEEEC
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H----HHHHHHHHHHHHHhCCCCCe-EEEEEEC
Confidence 33 3568899999999998888888999999999999987521 1 111222222222 2667 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+... ... .+++..+++.++ ++++++||++|.|+.+
T Consensus 136 ~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 136 CDLPTR-TVD----TKQAHELAKSYG-----IPFIETSAKTRQGVED 172 (190)
T ss_dssp TTCSCC-CSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred CcCCcc-cCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 998752 111 123334444444 3689999999999976
No 124
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2.8e-17 Score=157.52 Aligned_cols=150 Identities=21% Similarity=0.218 Sum_probs=94.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|+.... . ......| .....+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~t~~----~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV--V----------------------------TTKPTIG----FNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE--E----------------------------EECSSTT----CCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc--C----------------------------ccCCcCc----cceEEEEECC
Confidence 3568999999999999999999983211 0 0001112 1223344567
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHH-HHH---HcCCCcEEEEEecccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIR---SFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~-ll~---~lgip~iIVViNK~Dlv~ 419 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.+.. + ....+.+. ++. ..++| +|+|+||+|+.+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~-~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 133 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR------M-STASKELHLMLQEEELQDAA-LLVFANKQDQPG 133 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT------H-HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTT
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH------H-HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCC
Confidence 899999999999888877888899999999999987521 1 12222222 222 23556 999999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ...+++.+ .+....+....++++++||++|.|+.+
T Consensus 134 ~--~~~~~i~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 134 A--LSASEVSK----ELNLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp C--CCHHHHHH----HTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred C--CCHHHHHH----HhCcccccCCceEEEEccCCCCcCHHH
Confidence 2 22222322 222222222345789999999999976
No 125
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=7.3e-17 Score=160.53 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=105.2
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEE
Q 005973 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (666)
Q Consensus 260 ~~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~ 339 (666)
.......++|+|+|++|+|||||+++|+.... ........|++.......+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 59 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHT 59 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHH-----------------------------TCEEETTTTEEEEEEEEEE
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCccceeEEEEEEEE
Confidence 34456779999999999999999999663210 0111233466777666666
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-c-CCCcEEEEEecccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDA 417 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVViNK~Dl 417 (666)
......+.||||||+.+|...+..++..+|++|+|+|++.... +. .....+..+.. . ++| +|+|+||+|+
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 131 (221)
T 3gj0_A 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---YK----NVPNWHRDLVRVCENIP-IVLCGNKVDI 131 (221)
T ss_dssp TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---HH----THHHHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhCCCCC-EEEEEECCcc
Confidence 6667889999999999988878888889999999999987531 11 11122222222 2 666 9999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+.... .+...+.+..+ ++++++||++|.|+.+
T Consensus 132 ~~~~~~------~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 132 KDRKVK------AKSIVFHRKKN-----LQYYDISAKSNYNFEK 164 (221)
T ss_dssp SSCSSC------GGGCCHHHHHT-----CEEEECBGGGTBTTTH
T ss_pred cccccc------HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 742211 12222333333 4789999999999976
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=6.5e-17 Score=158.64 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=99.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEec
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDS 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~ 341 (666)
....++|+|+|++|+|||||+++|++..... ...+.++.+. ....+..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 70 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPE-------------------------------VYVPTVFENYIADIEVDG 70 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCS-------------------------------SCCCSSCCCCEEEEEETT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCc-------------------------------ccCCcccceEEEEEEECC
Confidence 3456899999999999999999999532110 0011111111 1122222
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~ 419 (666)
....+.||||||+++|......++..+|++|+|+|++.... +.......+..+... ++| +|+|+||+|+..
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTT
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhc
Confidence 34578999999999998888888899999999999986421 111112333444444 677 999999999975
Q ss_pred ccchhhhH---------HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~---------i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ..+. ..++...+.+.+++ .+++++||++|.|+.+
T Consensus 144 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 144 DEH-TRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVRE 189 (201)
T ss_dssp CHH-HHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred Ccc-chhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHH
Confidence 311 1110 11223334444442 3789999999999966
No 127
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=158.88 Aligned_cols=150 Identities=18% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEE-EEEEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid-~~~~~~~~~ 342 (666)
.+.++|+|+|++|+|||||+++|++.... ....+.+... .....+...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS-------------------------------EGYDPTVENTYSKIVTLGKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SCCCCCSEEEEEEEEC----
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC-------------------------------CCCCCccceEEEEEEEECCE
Confidence 46799999999999999999999953111 0001111111 222233445
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH----HcCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVViNK~Dlv 418 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.... +. .....+..+. ..++| +|+|+||+|+.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---FQ----VIESLYQKLHEGHGKTRVP-VVLVGNKADLS 142 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---HH----HHHHHHHHHHC-----CCC-EEEEEECTTCG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---HH----HHHHHHHHHHHhcCCCCCC-EEEEEECccCc
Confidence 6788999999999988888888899999999999986421 11 1122222222 23667 99999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
....... .+...+.+.++ ++++++||++|.|+.+
T Consensus 143 ~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 143 PEREVQA----VEGKKLAESWG-----ATFMESSARENQLTQG 176 (201)
T ss_dssp GGCCSCH----HHHHHHHHHHT-----CEEEECCTTCHHHHHH
T ss_pred cccccCH----HHHHHHHHHhC-----CeEEEEeCCCCCCHHH
Confidence 5322111 22233333334 4789999999999976
No 128
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=156.39 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe--c
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~--~ 341 (666)
.+.++|+|+|++|+|||||+++|++.... ....+. +.+.....+. .
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-------------------------------~~~~~t-~~~~~~~~~~~~~ 79 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP-------------------------------ESYTPT-VFERYMVNLQVKG 79 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC--------------------------------------CCC-CCEEEEEEEEETT
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCc-cceeEEEEEEECC
Confidence 45789999999999999999999842100 000011 1111112222 2
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~ 419 (666)
....+.||||||+.+|...+..++..+|++|+|+|++.... + .......+..+... ++| +|+|+||+|+..
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 152 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---F---DNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSCC-EEEEEECGGGGS
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhhc
Confidence 34578899999999998888888899999999999987421 1 11111222333332 566 999999999975
Q ss_pred ccchhhhH---------HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~---------i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ..+. ...+...+.+.+++ .+++++||++|.|+.+
T Consensus 153 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 153 DKS-LVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHA 198 (214)
T ss_dssp CHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred cch-hhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHH
Confidence 311 1110 01233344444442 4789999999999976
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.7e-16 Score=152.75 Aligned_cols=149 Identities=18% Similarity=0.112 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++..... . .....+.+.. ....+.....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~---------------------------~~~t~~~~~~-~~~~~~~~~~ 56 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--T---------------------------YIPTIEDTYR-QVISCDKSVC 56 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--T---------------------------TSCCCCEEEE-EEEEETTEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--c---------------------------ccCcccccee-EEEEECCEEE
Confidence 46899999999999999999999531100 0 0000111111 1122333446
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEEecccccc
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVViNK~Dlv~ 419 (666)
.+.||||||+.+|...+..++..+|++|+|+|++.... +. .....+..+.. .++| +|+|+||+|+..
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~ 128 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---LE----ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---HH----TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSS
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---HH----HHHHHHHHHHHHhcCCCCCC-EEEEEECccCCc
Confidence 78999999999999888888899999999999986421 11 11112222222 2566 999999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. ... .+...+...++ ++++++||++|.|+.+
T Consensus 129 ~~-~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 129 RE-VDT----REAQAVAQEWK-----CAFMETSAKMNYNVKE 160 (199)
T ss_dssp CS-SCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred cc-cCH----HHHHHHHHHhC-----CeEEEEecCCCCCHHH
Confidence 21 111 22223333334 4789999999999966
No 130
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=3.6e-17 Score=158.23 Aligned_cols=151 Identities=21% Similarity=0.201 Sum_probs=97.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|+... .. ......| .....+...+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------~~~~t~~----~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD--VV----------------------------TTVPTVG----VNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC--CE----------------------------EECSSTT----CCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC--CC----------------------------CcCCCCc----eEEEEEEECC
Confidence 356899999999999999999997321 00 0001112 2223345568
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.++...+..++..+|++|+|+|++.+.. +.....+...++.. .++| +|+|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR------MGVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT------HHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH------HHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 899999999999887777777889999999999987521 11122222223222 2566 9999999999753
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++...+... .+....++++++||++|.|+.+
T Consensus 139 --~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 139 --ASEAEIAEQLGVS----SIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp --CCHHHHHHHTTGG----GCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhChh----hccCCceEEEEccCCCccCHHH
Confidence 2222333333211 1112345789999999999966
No 131
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1.2e-16 Score=151.00 Aligned_cols=149 Identities=17% Similarity=0.105 Sum_probs=87.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~ 343 (666)
.++|+|+|++|+|||||+++|++...... .....+.+.....+.. ..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 47899999999999999999984321110 0011122222233333 34
Q ss_pred eEEEEEeCCCccchHHH-HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEecccccc
Q 005973 344 YHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~-~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~ 419 (666)
..+.||||||+.++... ....+..+|++|+|+|++... .+. ....+...+.... ++| +|+|+||+|+.+
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---SFS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---HHH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 67889999999988663 333467799999999998742 111 1112222223322 567 999999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... .+...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 124 SREVSL----EEGRHLAGTLS-----CKHIETSAALHHNTRE 156 (169)
T ss_dssp GCCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred cccCCH----HHHHHHHHHcC-----CcEEEecCccCCCHHH
Confidence 322221 23333444444 4789999999999976
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=1.9e-17 Score=181.69 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=104.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+++|++.... ..+..+|+|++.....+...+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~ 82 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVS------------------------------IVSDYAGTTTDPVYKSMELHPI 82 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCC------------------------------ccCCCCCeeeeeEEEEEEECCC
Confidence 4689999999999999999999843211 1233467788877777776654
Q ss_pred -EEEEEeCCCccchH-------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 -HVVVLDSPGHKDFV-------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 -~i~liDTPGh~~f~-------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+.+|. ..+...+..+|++|+|+|+ + ...++.+.+..+...++| +|+|+||+|
T Consensus 83 ~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~--------~~~~~~~~l~~l~~~~~p-iIvV~NK~D 151 (423)
T 3qq5_A 83 GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--A--------PTPYEDDVVNLFKEMEIP-FVVVVNKID 151 (423)
T ss_dssp EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--S--------CCHHHHHHHHHHHHTTCC-EEEECCCCT
T ss_pred CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--C--------ChHHHHHHHHHHHhcCCC-EEEEEeCcC
Confidence 89999999998763 4466778889999999999 2 246788888889999998 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+...... +. ...+.+.++ ++++++||++|.|+.+
T Consensus 152 l~~~~~~---~~---~~~l~~~~g-----~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 152 VLGEKAE---EL---KGLYESRYE-----AKVLLVSALQKKGFDD 185 (423)
T ss_dssp TTTCCCT---HH---HHHSSCCTT-----CCCCCCSSCCTTSTTT
T ss_pred CCCccHH---HH---HHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 9864332 12 222332333 4789999999999966
No 133
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=6.1e-17 Score=167.81 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=98.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+++|++|+|||||+++|++.... ....+|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCCcEEEEEEEEec-CCe
Confidence 478999999999999999999843111 112257888777677766 778
Q ss_pred EEEEeCCCccchH------HHHHHhcc--cCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 346 VVVLDSPGHKDFV------PNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 346 i~liDTPGh~~f~------~~~~~~~~--~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
+.||||||+..|. .....++. .+|++|+|+|++.. .........+..+++| +|+|+||+|+
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~~~~~~~~l~~~~~p-~ilv~NK~Dl 119 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ERNLYLTTQLIETGIP-VTIALNMIDV 119 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTCSC-EEEEEECHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------HhHHHHHHHHHhcCCC-EEEEEEChhh
Confidence 9999999988764 22223333 69999999999752 1223344455667898 9999999998
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..... .......+. +.++ ++++++||++|.|+.+
T Consensus 120 ~~~~~--~~~~~~~l~---~~lg-----~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 120 LDGQG--KKINVDKLS---YHLG-----VPVVATSALKQTGVDQ 153 (272)
T ss_dssp HHHTT--CCCCHHHHH---HHHT-----SCEEECBTTTTBSHHH
T ss_pred CCcCC--cHHHHHHHH---HHcC-----CCEEEEEccCCCCHHH
Confidence 74211 111112222 2233 4789999999999966
No 134
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1e-16 Score=155.71 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=98.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--C
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~ 342 (666)
..++|+|+|+.|+|||||+++|++... .. ...+. +.+.....+.. .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~t-~~~~~~~~~~~~~~ 64 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PE-----------------------------EYVPT-VFDHYAVSVTVGGK 64 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CC-----------------------------SCCCS-SCCCEEEEEESSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CC-----------------------------CCCCc-ccceeEEEEEECCE
Confidence 568999999999999999999995311 00 00011 11111122333 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.... + .......+..+... ++| +|+|+||+|+...
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 137 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhccc
Confidence 3678899999999998888888899999999999987521 1 11111233344443 677 9999999999753
Q ss_pred cch--h------hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKD--R------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e--~------~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... . .....++...+.+.+++ .+++++||++|.|+.+
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 138 PKTLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT 182 (194)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred ccchhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHH
Confidence 110 0 00012333444444443 3689999999999966
No 135
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=6.5e-17 Score=160.19 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=95.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++.... .......+.+............
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 59 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-----------------------------KNYNATVGAVNHPVTFLDDQGN 59 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------------------CEEETTTTEEEEEEEEEBTTSC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCccceeeEEEEEEeCCCc
Confidence 45789999999999999999999842110 0001112222222222211122
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 344 -~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
..+.||||||+.++.......+..+|++|+|+|++.+.... .+ ......+......++| +|+|+||+|+.....
T Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~-~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 134 (218)
T 4djt_A 60 VIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQ---NL-ARWVKEFQAVVGNEAP-IVVCANKIDIKNRQK 134 (218)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHH---TH-HHHHHHHHHHHCSSSC-EEEEEECTTCC----
T ss_pred EEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHH---HH-HHHHHHHHHhcCCCCC-EEEEEECCCCccccc
Confidence 67999999999998877777888999999999998753211 11 1111122222223566 999999999974211
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ....+..++...+ ++++++||++|.|+.+
T Consensus 135 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 135 I----SKKLVMEVLKGKN-----YEYFEISAKTAHNFGL 164 (218)
T ss_dssp C----CHHHHHHHTTTCC-----CEEEEEBTTTTBTTTH
T ss_pred c----CHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Confidence 1 1122333333333 5799999999999976
No 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=169.98 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=100.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|+... + . +.. .|+......+...+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~--~-------------------------~-----~~~--pT~~~~~~~~~~~~ 208 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------V-----TTI--PTIGFNVETVEYKN 208 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSC--C-------------------------E-----EEE--EETTEEEEEEEETT
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCC--C-------------------------C-----Ccc--cccceEEEEEecCc
Confidence 356899999999999999999997321 0 0 001 14445556677788
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+++|...+..++..+|++|+|+|++.... +.........++... ++| +|+|+||+|+.+.
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~ 281 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER------VNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS------HHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH------HHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcc
Confidence 999999999999998888888999999999999986421 222223333333333 666 9999999999853
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+++..++... ......++++++||++|.|+.+
T Consensus 282 --~~~~~i~~~~~~~----~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 282 --MNAAEITDKLGLH----SLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp --CCHHHHHHHHTCT----TCCSSCEEEEECBTTTTBTHHH
T ss_pred --cCHHHHHHHhchh----hhhcCCCEEEEEECCCCcCHHH
Confidence 2223333333221 1222356899999999999976
No 137
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.68 E-value=8.4e-17 Score=157.26 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC-
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~- 342 (666)
+..++|+|+|++|+|||||+++|++....+. .+....+..+.....+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-----------------------------KDYAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc-----------------------------CCCCCccceEEEEEEEEECC
Confidence 3568999999999999999999984311110 0111112223333344444
Q ss_pred ---CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEe
Q 005973 343 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVN 413 (666)
Q Consensus 343 ---~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVViN 413 (666)
...+.||||||+.+|...+..++..+|++|+|+|++.+.. + ......+..+.. .++| +|+|+|
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~~~p-iilv~n 140 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F----ESCKAWFELLKSARPDRERPLR-AVLVAN 140 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H----HHHHHHHHHHHHHCSCTTSCCE-EEEEEE
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H----HHHHHHHHHHHHhhcccccCCc-EEEEEE
Confidence 4689999999999999888888999999999999987521 1 122233333333 3566 999999
Q ss_pred cccccc-ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeeccc-CCCccc
Q 005973 414 KMDAVQ-YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE-NQNLVT 461 (666)
Q Consensus 414 K~Dlv~-~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~t-G~nI~e 461 (666)
|+|+.. ..... .+++..+++.++ ++++++||++ |.|+.+
T Consensus 141 K~Dl~~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 141 KTDLPPQRHQVR----LDMAQDWATTNT-----LDFFDVSANPPGKDADA 181 (208)
T ss_dssp CC-------CCC----HHHHHHHHHHTT-----CEEEECCC-------CH
T ss_pred CcccchhhccCC----HHHHHHHHHHcC-----CEEEEeccCCCCcCHHH
Confidence 999974 21111 233344444444 4789999999 999976
No 138
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.1e-16 Score=157.75 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=96.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~ 342 (666)
+..++|+|+|++|+|||||+++|++..... ...+.++... ....+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 71 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPE-------------------------------VYVPTVFENYVADIEVDGK 71 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC--------------------------------------CCEEEEEEEETTE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------cCCCcccceEEEEEEECCE
Confidence 456899999999999999999999532110 0001111111 11122223
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|......++..+|++|+|+|++.... +.......+..+... ++| +|+|+||+|+...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS------LENIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 3578899999999988777788899999999999986421 111112333444443 677 9999999999753
Q ss_pred cchhhhHH---------HHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i---------~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. ..+.+ ..+...+...+++ .+++++||++|.|+.+
T Consensus 145 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 145 EH-VRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVRE 189 (207)
T ss_dssp HH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred cc-chhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHH
Confidence 11 11111 1122223333332 3789999999999976
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.67 E-value=3.2e-16 Score=151.93 Aligned_cols=149 Identities=16% Similarity=0.060 Sum_probs=93.4
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~ 340 (666)
...++.++|+|+|..|+|||||+++|+...-. ....+ |.......+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-------------------------------~~~~~--t~~~~~~~~~ 61 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYV-------------------------------QEESP--EGGRFKKEIV 61 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC-------------------------------CCCCT--TCEEEEEEEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCcCC--CcceEEEEEE
Confidence 34567899999999999999999999843110 00001 1111112333
Q ss_pred cCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEec
Q 005973 341 SKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNK 414 (666)
Q Consensus 341 ~~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK 414 (666)
..+ ..+.||||||+++|. ++..+|++|+|+|++.... + ......+..+.. .++| +|+|+||
T Consensus 62 ~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~p-iilv~nK 128 (184)
T 3ihw_A 62 VDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---F----QTVYNYFLRLCSFRNASEVP-MVLVGTQ 128 (184)
T ss_dssp ETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---H----HHHHHHHHHHHTTSCGGGSC-EEEEEEC
T ss_pred ECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCCC-EEEEEEC
Confidence 333 567789999998886 5677999999999987521 1 111223333333 3566 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+........ ..+++..+.+.++ .++++++||++|.|+.+
T Consensus 129 ~Dl~~~~~~~v--~~~~~~~~~~~~~----~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 129 DAISAANPRVI--DDSRARKLSTDLK----RCTYYETCATYGLNVER 169 (184)
T ss_dssp TTCBTTBCCCS--CHHHHHHHHHHTT----TCEEEEEBTTTTBTHHH
T ss_pred ccccccccccc--CHHHHHHHHHHcC----CCeEEEecCCCCCCHHH
Confidence 99963222111 1223344444443 25789999999999976
No 140
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.4e-16 Score=151.76 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~ 342 (666)
...++|+|+|++|+|||||+++|++.... ....+.+.... ....+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 74 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI-------------------------------WEYDPTLESTYRHQATIDDE 74 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SCCCTTCCEEEEEEEEETTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------cccCCCCCceEEEEEEECCE
Confidence 35689999999999999999999953110 00011111111 11223334
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~ 422 (666)
...+.||||||+.+ .......+..+|++|+|+|++.... +..+.....+........++| +|+|+||+|+.....
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~ 149 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---FEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQ 149 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---HHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---HHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccc
Confidence 56789999999988 5566677888999999999987421 111111111111111224677 999999999975322
Q ss_pred hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCC-Cccc
Q 005973 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (666)
Q Consensus 423 e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~-nI~e 461 (666)
... .+...+.+.++ ++++++||++|. |+.+
T Consensus 150 v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 150 VST----EEGEKLATELA-----CAFYECSACTGEGNITE 180 (196)
T ss_dssp SCH----HHHHHHHHHHT-----SEEEECCTTTCTTCHHH
T ss_pred cCH----HHHHHHHHHhC-----CeEEEECCCcCCcCHHH
Confidence 111 22233333333 478999999999 9966
No 141
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=155.07 Aligned_cols=157 Identities=16% Similarity=0.087 Sum_probs=94.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 262 ~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
.....++|+|+|++|+|||||+++|++.. ... .. ..++.+.....+..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~-~~t~~~~~~~~~~~ 63 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT-----------------------------EY-IPTAFDNFSAVVSV 63 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------CC-CCcccceeEEEEEE
Confidence 34567999999999999999999998431 000 00 11111111223333
Q ss_pred CC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccc
Q 005973 342 KN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDA 417 (666)
Q Consensus 342 ~~--~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dl 417 (666)
.+ ..+.||||||+.+|...+..++..+|++|+|+|++..... .......+..+... ++| +|+|+||+|+
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF------QNVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 44 4677999999999877777788899999999999875211 11111222233332 666 9999999999
Q ss_pred ccccch--------hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e--------~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... ......++...+.+.+++ .+++++||++|.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKE 184 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHH
Confidence 752110 000011233334433342 4789999999999976
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.67 E-value=1.3e-16 Score=163.37 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=99.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++....+... ...++|.+.....+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~ 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----------------------------GSQTLTKTCSKSQGSWGN 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----------------------------TSCCCCCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----------------------------CCCceeeeeEEEEEEeCC
Confidence 456899999999999999999999543222110 011256665666667788
Q ss_pred eEEEEEeCCCccch-----------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-----CCCc
Q 005973 344 YHVVVLDSPGHKDF-----------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQ 407 (666)
Q Consensus 344 ~~i~liDTPGh~~f-----------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~ 407 (666)
..+.||||||+.++ ...+..++..+|++|+|+|+.. +..+....+..+..+ +.|
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR---------YTSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC---------CCHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC---------CCHHHHHHHHHHHHHhCchhhcc-
Confidence 99999999998664 3333446788999999999985 124555555555554 556
Q ss_pred EEEEEe-ccccccccchhhhH-HH----HHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 408 LIVAVN-KMDAVQYSKDRFDS-IK----VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 408 iIVViN-K~Dlv~~~~e~~~~-i~----~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+|+| |+|+.+.. +.. +. .++..++..++.....+..+++||++|.|+.+
T Consensus 141 ~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 197 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGS---LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKE 197 (260)
T ss_dssp EEEEEECGGGGTTCC---HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHH
T ss_pred EEEEEEcccccCCcc---HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHH
Confidence 666666 99998421 221 11 22333443333110001117899999999966
No 143
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=8.2e-17 Score=153.96 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=91.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~ 342 (666)
+..++|+|+|++|+|||||+++|+.... .... .+.+.... ....+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~-----------------------------~~t~~~~~~~~~~~~~~ 54 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDY-----------------------------VPTVFDNFSANVVVNGA 54 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC--C---------------------------------------CBCCCC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC--CCCC-----------------------------CCeeeeeEEEEEEECCE
Confidence 3468999999999999999999995321 0000 00000000 00011223
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+++|...+..++..+|++|+|+|++.... +.......+..+... ++| +|+|+||+|+...
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 127 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS------YENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD 127 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcC
Confidence 4567799999999998888888899999999999987421 111111233333332 566 9999999999753
Q ss_pred cchh------hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDR------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~------~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... ......+...+.+.+++ .+++++||++|.|+.+
T Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 128 KQFFIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKG 170 (182)
T ss_dssp HHHHHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHH
Confidence 2110 00012233344444442 4789999999999966
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.67 E-value=6e-16 Score=162.98 Aligned_cols=158 Identities=21% Similarity=0.257 Sum_probs=105.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-CCe
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~-~~~ 344 (666)
.++|+++|.+|+|||||+++|++..... .....+.|++..+..+.. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------------------------~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------------------------------DTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------------------------------GGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------------------------------cccCcCCccceEEEEEEeCCce
Confidence 5789999999999999999998432111 112356677766666653 578
Q ss_pred EEEEEeCCCccchH-----HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccc
Q 005973 345 HVVVLDSPGHKDFV-----PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDA 417 (666)
Q Consensus 345 ~i~liDTPGh~~f~-----~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dl 417 (666)
.+.||||||+.+|. ......+..+|++|+|+|++...... .+ ......+..+.. .++| +|+|+||+|+
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~---~l-~~~~~~l~~l~~~~~~~p-iilv~NK~Dl 127 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK---DI-EIFAKALKQLRKYSPDAK-IFVLLHKMDL 127 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHH---HH-HHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHH---HH-HHHHHHHHHHHHhCCCCe-EEEEEecccc
Confidence 99999999999884 34445567899999999998763211 00 011112222222 2677 9999999999
Q ss_pred ccccc--hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~--e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...+. +.++....++..+.+.+++. .++++++||++ .|+.+
T Consensus 128 ~~~~~r~~~~~v~~~~~~~~~~~~g~~--~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 128 VQLDKREELFQIMMKNLSETSSEFGFP--NLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTCC--SCEEEECCTTS-SHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHcCCC--CeEEEEeeecC-ChHHH
Confidence 85211 11124456677777776652 46899999999 67654
No 145
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.66 E-value=2.6e-16 Score=155.17 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=96.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
+..++|+|+|++|+|||||+++|+..... ... ....+.... ....+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~---------------------------~~t~~~~~~-~~~~~~~~~ 56 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDY---------------------------IPTVFDNFS-ANVAVDGQI 56 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SSC---------------------------CCSSCCCEE-EEEECSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--ccC---------------------------CCccceeEE-EEEEECCEE
Confidence 35689999999999999999999843110 000 000111111 111223344
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~~ 421 (666)
..+.||||||+++|...+..++..+|++|+|+|++.... + .......+..+... ++| +|+|+||+|+....
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---Y---ENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDK 129 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCc
Confidence 688999999999998877788899999999999987521 1 11111233344433 677 99999999997421
Q ss_pred chhh----hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRF----DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~----~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .....+...+.+.+++ .+++++||++|+|+.+
T Consensus 130 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 130 GYLADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKA 169 (212)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred cccccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHH
Confidence 1000 0012233344444442 4789999999999976
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=6.5e-18 Score=165.37 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=91.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++... .....++++.+.....+...+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 79 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTY-------------------------------TESYISTIGVDFKIRTIELDG 79 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCC-------------------------------CCHHHHHHCCSEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCcCCcccceEEEEEEEECC
Confidence 4579999999999999999999973211 111122334444444444444
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEeccccc
Q 005973 344 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 --~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK~Dlv 418 (666)
..+.||||||+.+|...+..++..+|++|+|+|++.... + ......+..+... ++| +|+|+||+|+.
T Consensus 80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F----NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H----HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H----HHHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 678999999999988777778899999999999987521 1 1222333333333 556 89999999997
Q ss_pred cccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 419 ~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.......+ +...+...++ ++++++||++|.|+.+
T Consensus 152 ~~~~v~~~----~~~~~~~~~~-----~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 152 TKKVVDYT----TAKEFADSLG-----IPFLETSAKNATNVEQ 185 (199)
T ss_dssp --CCCCSC----C-CHHHHTTT-----CCBCCCCC---HHHHH
T ss_pred ccccCCHH----HHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 53221111 1222333333 4689999999999966
No 147
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=2.6e-16 Score=156.41 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=98.5
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEE
Q 005973 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYF 339 (666)
Q Consensus 261 ~~~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~ 339 (666)
...+..++|+|+|..|+|||||+++|+..... ....+.+..+. ....+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~ 70 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYP-------------------------------ETYVPTVFENYTACLET 70 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCSEEEEEEEEEC
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCcCCeeeeeEEEEEEE
Confidence 34456799999999999999999999853110 01111112221 11223
Q ss_pred ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccc
Q 005973 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDA 417 (666)
Q Consensus 340 ~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dl 417 (666)
......+.||||||+.+|......++..+|++|+|+|++..... .......+..+... ++| +|+|+||+|+
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 143 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETV------DSALKKWRTEILDYCPSTR-VLLIGCKTDL 143 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHH------HHHHTHHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 34557889999999999988888889999999999999875211 11112233334433 566 9999999999
Q ss_pred ccccch--------hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCC-ccc
Q 005973 418 VQYSKD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 461 (666)
Q Consensus 418 v~~~~e--------~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~n-I~e 461 (666)
...... ......++...+.+.+++ .+++++||++|.| +.+
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHH
Confidence 742100 000112334444444443 2789999999998 966
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=2.4e-16 Score=174.96 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=101.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.|..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+++.
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTC
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEEC
Confidence 3567899999999999999999998532211 1224688999888888888
Q ss_pred CeEEEEEeCCC--------ccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEec
Q 005973 343 NYHVVVLDSPG--------HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (666)
Q Consensus 343 ~~~i~liDTPG--------h~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK 414 (666)
+..+.|||||| ++.+...+..++..||++|+|+|+..+ +.....+.+.+++..+.| +|+|+||
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--------~~~~d~~l~~~l~~~~~p-vilV~NK 140 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNK 140 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--------SCHHHHHHHHHHTTCCSC-EEEEEEC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--------CChHHHHHHHHHHHcCCC-EEEEEEC
Confidence 99999999999 677777788888999999999999876 345677778888888888 9999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+.... ..+..+. .+++. .++++||++|.|+.+
T Consensus 141 ~D~~~~~--------~~~~e~~-~lg~~----~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 141 LDNTEMR--------ANIYDFY-SLGFG----EPYPISGTHGLGLGD 174 (456)
T ss_dssp C-----------------CCSG-GGSSS----SEEECCTTTCTTHHH
T ss_pred ccchhhh--------hhHHHHH-HcCCC----ceEEeecccccchHH
Confidence 9987421 1122222 23432 357999999999965
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=151.66 Aligned_cols=151 Identities=19% Similarity=0.106 Sum_probs=93.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec-
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~- 341 (666)
....++|+|+|.+|+|||||+++|++...... ..++++.+.....+..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 68 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-------------------------------HEPENPEDTYERRIMVD 68 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGG-------------------------------GTTTSCTTEEEEEEEET
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCcc-------------------------------CCCCcccceEEEEEEEC
Confidence 44678999999999999999999973322110 0112222222222333
Q ss_pred -CCeEEEEEeCCCccchHH-HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecc
Q 005973 342 -KNYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKM 415 (666)
Q Consensus 342 -~~~~i~liDTPGh~~f~~-~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~ 415 (666)
....+.||||||+.++.. ....++..+|++|+|+|++.... |. .....+..+.. .++| +|+|+||+
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~----~~~~~~~~i~~~~~~~~~p-iilv~nK~ 140 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS----KVPETLLRLRAGRPHHDLP-VILVGNKS 140 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH----THHHHHHHHHHHSTTSCCC-EEEEEECT
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCC-EEEEeech
Confidence 345678999999988765 34455678999999999986421 11 11122222222 2667 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+........ ++...+.+.++ ++++++||++|.|+.+
T Consensus 141 Dl~~~~~v~~----~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 141 DLARSREVSL----EEGRHLAGTLS-----CKHIETSAALHHNTRE 177 (195)
T ss_dssp TCTTTCCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred hccccCCcCH----HHHHHHHHHhC-----CEEEEEcCCCCCCHHH
Confidence 9974222112 22233333333 4789999999999976
No 150
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.65 E-value=3.5e-16 Score=174.18 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=85.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 35789999999999999999998542211 122367888888788888999
Q ss_pred EEEEEeCCCccchHHH--------HHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEecc
Q 005973 345 HVVVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKM 415 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~--------~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViNK~ 415 (666)
.+.||||||+.++... +..++..+|++|+|+|++.+... .+..+...++..+ ++| +|+|+||+
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-------~~~~~~~~~l~~l~~~p-iIvV~NK~ 353 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-------DELTEIRELKAAHPAAK-FLTVANKL 353 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG-------GGHHHHHHHHHHCTTSE-EEEEEECT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-------hhhHHHHHHHHhcCCCC-EEEEEECc
Confidence 9999999998775422 34467889999999999986422 1122333344443 455 99999999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+...... . .+++... ++ .+++++||++|.|+.+
T Consensus 354 Dl~~~~~~--~--~~~l~~~----~~----~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 354 DRAANADA--L--IRAIADG----TG----TEVIGISALNGDGIDT 387 (476)
T ss_dssp TSCTTTHH--H--HHHHHHH----HT----SCEEECBTTTTBSHHH
T ss_pred CCCCccch--h--HHHHHhc----CC----CceEEEEECCCCCHHH
Confidence 99853221 1 1122221 22 3689999999999976
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=5.3e-16 Score=158.32 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=99.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
....++|+|+|++|+|||||+|+|++....+.... ..|+|.......+...
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~-----------------------------~~~~T~~~~~~~~~~~ 68 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG-----------------------------ATSVTRACTTGSRRWD 68 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCC-----------------------------CCCccccEEEEEEEEC
Confidence 35679999999999999999999996543321111 1245666666667778
Q ss_pred CeEEEEEeCCCc--------cchHHHHHHhc----ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc------C
Q 005973 343 NYHVVVLDSPGH--------KDFVPNMISGA----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------G 404 (666)
Q Consensus 343 ~~~i~liDTPGh--------~~f~~~~~~~~----~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l------g 404 (666)
+..++||||||+ .++...+...+ ..+|++|+|+|+.. +.......+..+..+ +
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~~~~~~~~~ 139 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR---------FTAQDQQAVRQVRDMFGEDVLK 139 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB---------CCHHHHHHHHHHHHHHCGGGGG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHhChhhhc
Confidence 899999999997 55666665555 88999999999974 123445555555553 5
Q ss_pred CCcEEEEEeccccccccchhhhHHH-----HHHhhhhhhcCcCCCCCcEEEeeccc-----CCCccc
Q 005973 405 VDQLIVAVNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGFKDASLTWIPLSALE-----NQNLVT 461 (666)
Q Consensus 405 ip~iIVViNK~Dlv~~~~e~~~~i~-----~el~~~l~~~~~~~~~i~iIpvSA~t-----G~nI~e 461 (666)
.| +|+|.||+|+.+.+ ++... ..+..+++.++. .++++++.. +.|+.+
T Consensus 140 ~~-iilv~nK~Dl~~~~---~~~~l~~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~~~~~v~~ 197 (247)
T 3lxw_A 140 WM-VIVFTRKEDLAGGS---LHDYVSNTENRALRELVAECGG-----RVCAFDNRATGREQEAQVEQ 197 (247)
T ss_dssp GE-EEEEECGGGGTTCC---HHHHHHHCCCHHHHHHHHHTTT-----CEEECCTTCCHHHHHHHHHH
T ss_pred cE-EEEEEchHhcCCCC---HHHHHhhcccHHHHHHHHHcCC-----eEEEEeCCCCccccHHHHHH
Confidence 56 89999999997532 22222 346667766663 345555443 567754
No 152
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=4.7e-16 Score=149.98 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=96.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEE-EEEEEecC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSK 342 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~-~~~~~~~~ 342 (666)
...++|+|+|++|+|||||+++|++.... ....+.+.... ....+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 53 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-------------------------------ENYVPTVFENYTASFEIDTQ 53 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCSEEEEEEEEECSSC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEECCE
Confidence 35689999999999999999999953110 00011111111 11222334
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~ 420 (666)
...+.||||||+.+|.......+..+|++|+|+|++.... + .......+..+.. .++| +|+|+||+|+...
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 126 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---L---DSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 126 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcc
Confidence 5678999999999988777778899999999999987421 1 1110122223333 2556 9999999999742
Q ss_pred cchhhh---------HHHHHHhhhhhhcCcCCCCCcEEEeecc-cCCCccc
Q 005973 421 SKDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 461 (666)
Q Consensus 421 ~~e~~~---------~i~~el~~~l~~~~~~~~~i~iIpvSA~-tG~nI~e 461 (666)
. .... ...++...+.+.++ .++++++||+ +|.|+.+
T Consensus 127 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~gi~~ 172 (184)
T 1m7b_A 127 V-STLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRD 172 (184)
T ss_dssp H-HHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECBTTTBHHHHHH
T ss_pred h-hhHhhhhhcccCCCCHHHHHHHHHHcC----CcEEEEeeecCCCcCHHH
Confidence 1 0000 01123344444444 2578999999 6899966
No 153
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.64 E-value=9e-16 Score=146.53 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=88.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|.+|+|||||+++|++..... .....+... .....+....
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------------------------~~~t~~~~~-~~~~~~~~~~ 53 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------------------------------LEKTESEQY-KKEMLVDGQT 53 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------------------------------CSSCSSSEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------------------------cCCCcceeE-EEEEEECCEE
Confidence 356899999999999999999999531100 000111111 1112222233
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEecccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDA 417 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVViNK~Dl 417 (666)
..+.||||||++++ .+++.+|++|+|+|++.... +. .....+..+.. .++| +|+|+||+|+
T Consensus 54 ~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~~----~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (178)
T 2iwr_A 54 HLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---FQ----AVSRLHGQLSSLRGEGRGGLA-LALVGTQDRI 120 (178)
T ss_dssp EEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---HH----HHHHHHHHHHHHHCSSSCCCE-EEEEEECTTC
T ss_pred EEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---HH----HHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 56889999999873 35677999999999987521 11 11222212222 2556 9999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
........ ..+++..+.+..+ .++++++||++|.|+.+
T Consensus 121 ~~~~~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 121 SASSPRVV--GDARARALXADMK----RCSYYETXATYGLNVDR 158 (178)
T ss_dssp BTTBCCCS--CHHHHHHHHHHHS----SEEEEEEBTTTTBTHHH
T ss_pred cccccCcC--CHHHHHHHHHhhc----CCeEEEEeccccCCHHH
Confidence 53111111 1122333333332 25789999999999976
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=147.98 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=91.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|..|+|||||+++|++..-. .. .....+.+.. ....+....
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~---------------------------~~~t~~~~~~-~~~~~~~~~ 68 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SE---------------------------YDPNLEDTYS-SEETVDHQP 68 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SC---------------------------CCTTCCEEEE-EEEEETTEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cc---------------------------cCCCccceee-EEEEECCEE
Confidence 45789999999999999999999953210 00 0001111111 112233344
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH------cCCCcEEEEEecccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDA 417 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVViNK~Dl 417 (666)
..+.||||||+.+|... ..++..+|++|+|+|++... .+. .....+..+.. .++| +|+|+||+|+
T Consensus 69 ~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ---SFD----SSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 67889999999887543 45778899999999998642 111 11222222222 3677 9999999999
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeec-ccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA-LENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA-~tG~nI~e 461 (666)
....... .++...+.+.++ ++++++|| ++|.|+.+
T Consensus 140 ~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 140 AQYRQVT----KAEGVALAGRFG-----CLFFEVSACLDFEHVQH 175 (187)
T ss_dssp GGGCSSC----HHHHHHHHHHHT-----CEEEECCSSSCSHHHHH
T ss_pred hhcCccC----HHHHHHHHHHcC-----CcEEEEeecCccccHHH
Confidence 7422111 123334444444 47899999 89999966
No 155
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.63 E-value=5.8e-16 Score=153.08 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=96.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEE-EEEEec
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDS 341 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~-~~~~~~ 341 (666)
....++|+|+|.+|+|||||+++|++.... ....+.+..... ...++.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 73 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFP-------------------------------ENYVPTVFENYTASFEIDT 73 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCSEEEEEEEEESSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCcCCccceeEEEEEEECC
Confidence 345789999999999999999999953110 001111111111 112233
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~ 419 (666)
....+.||||||+.+|......++..+|++|+|+|++.... + .......+..+.. .++| +|+|+||+|+..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~---~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 146 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---L---DSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHHCCCCC-EEEEEechhhcc
Confidence 45678999999999988777778899999999999987421 1 1111122233333 2555 999999999974
Q ss_pred ccchhhh---------HHHHHHhhhhhhcCcCCCCCcEEEeecc-cCCCccc
Q 005973 420 YSKDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~---------~i~~el~~~l~~~~~~~~~i~iIpvSA~-tG~nI~e 461 (666)
.. .... ...++...+.+.++ .++++++||+ +|.|+.+
T Consensus 147 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~gv~~ 193 (205)
T 1gwn_A 147 DV-STLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRD 193 (205)
T ss_dssp CH-HHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECCTTTCHHHHHH
T ss_pred ch-hhhhhhcccccCCCCHHHHHHHHHHcC----CCEEEEeeeccCCcCHHH
Confidence 21 0000 01123344444444 2478999999 6899966
No 156
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=1e-15 Score=147.35 Aligned_cols=150 Identities=23% Similarity=0.308 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
++|+|+|++|+|||||+++|++... .....+|+|.+.....+. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~----~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-------------------------------RRGKRPGVTRKIIEIEWK----NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-------------------------------SSSSSTTCTTSCEEEEET----TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-------------------------------ccCCCCCccceeEEEecC----CE
Confidence 6899999999999999999984311 111223555444433332 68
Q ss_pred EEEeCCC-----------ccchHHHHHHh----cccCCEEEEEEeCCCCccccccccc-----hhHHHHHHHHHHHcCCC
Q 005973 347 VVLDSPG-----------HKDFVPNMISG----ATQSDAAILVIDASVGSFEVGMNTA-----KGLTREHAQLIRSFGVD 406 (666)
Q Consensus 347 ~liDTPG-----------h~~f~~~~~~~----~~~aD~aIlVVDa~~g~~e~~~~~~-----~~qt~e~l~ll~~lgip 406 (666)
.|||||| ++.|...+..+ +..+++++.|+|+... +.-...+ ..+..+.+..+...++|
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAA--PEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHH--HHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhh--hhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 9999999 45554444333 4557788888887532 1000000 01233445556667888
Q ss_pred cEEEEEeccccccccchhhhHHHHHHhhhhhhcCcC--CCCCcEEEeecccCCCccc
Q 005973 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 407 ~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~--~~~i~iIpvSA~tG~nI~e 461 (666)
+++|+||+|+..... ..+..+.+.+++. ....+++++||++|.|+.+
T Consensus 125 -iilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 125 -TIVAVNKLDKIKNVQ-------EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp -EEEEEECGGGCSCHH-------HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred -eEEEeehHhccCcHH-------HHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 999999999985321 1222333333331 0023579999999999976
No 157
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=1.5e-15 Score=170.18 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=104.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~ 342 (666)
.+..++|+|+|.+|+|||||+++|++.... . ...|+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--------------------------------~--~~~T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV--------------------------------T--TIPTVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC--------------------------------C--CCCCSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC--------------------------------C--cCCccceeEEEEEeC
Confidence 346789999999999999999999953210 0 112444555667778
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~ 419 (666)
+..+.||||||+.+|...+..++..+|++|+|+|++.... +.....+...++.. .++| +|+|+||+|+.+
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s------~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR------IDEARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG------HHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH------HHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 8999999999999998888888999999999999987521 11222222233322 3666 999999999975
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. ...+++...+... ......++++++||++|+|+.+
T Consensus 438 ~--~~~~~~~~~~~~~----~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 438 A--MKPHEIQEKLGLT----RIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp C--CCHHHHHHHTTCT----TCCSSCEEEEECBTTTTBTHHH
T ss_pred C--CCHHHHHHHhchh----hhhcCCeEEEEEECCCCCCHHH
Confidence 2 1222233322211 1112345789999999999976
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=1.7e-15 Score=156.76 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=88.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
..++|+|+|++|+|||||+|+|+.......... .......++++++.....+...+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------------------~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------------------GPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------------------CcccccCCceEEEEEEEEEecCCe
Confidence 468999999999999999999984322111000 00001123445555555555444
Q ss_pred -eEEEEEeCCCccc-------hHHHH-------HHhcc-------------cCCEEEEEEeCCCCccccccccchhHHHH
Q 005973 344 -YHVVVLDSPGHKD-------FVPNM-------ISGAT-------------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (666)
Q Consensus 344 -~~i~liDTPGh~~-------f~~~~-------~~~~~-------------~aD~aIlVVDa~~g~~e~~~~~~~~qt~e 395 (666)
..++||||||+.+ |.... ..++. .+|++|++|+..... +.....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-------~~~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-------LKPLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-------CCHHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-------CCHHHHH
Confidence 4899999999732 21111 11222 277999999766421 3456666
Q ss_pred HHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 396 ~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+..+.. ++| +|+|+||+|+.. ...+...++.+...+...+ ++++++||++|+|+.+
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~~--~~e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~~~~~~ 193 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENK 193 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCC----------
T ss_pred HHHHHhc-cCC-EEEEEeccCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEcCCCCCChhHHH
Confidence 6666666 777 999999999973 3445555556666665544 4678899999999965
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=5.3e-16 Score=172.94 Aligned_cols=143 Identities=25% Similarity=0.280 Sum_probs=102.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
.++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~------------------------------vs~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAI------------------------------VTDIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCC------------------------------CCCSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCc------------------------------cCCCCCeeeeeEEEEEecCCeE
Confidence 4789999999999999999999653221 1123577887777777778899
Q ss_pred EEEEeCCCcc-chH--------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 346 VVVLDSPGHK-DFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 346 i~liDTPGh~-~f~--------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
+.||||||+. ++. ..+..++..+|++|+|+|++.+.. .+..+.+..+ .+.| +|+|+||+|
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s--------~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD--------EEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC--------HHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC--------HHHHHHHHHh--cCCC-EEEEEECcc
Confidence 9999999987 542 445677889999999999987631 2333333333 3566 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+... ...+ ++..++ + ..++++++||++|+|+.+
T Consensus 362 L~~~--~~~~----~~~~~~---~---~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 362 VVEK--INEE----EIKNKL---G---TDRHMVKISALKGEGLEK 394 (482)
T ss_dssp SCCC--CCHH----HHHHHH---T---CSTTEEEEEGGGTCCHHH
T ss_pred cccc--cCHH----HHHHHh---c---CCCcEEEEECCCCCCHHH
Confidence 9742 1112 222222 1 125789999999999976
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.60 E-value=1.2e-15 Score=164.34 Aligned_cols=154 Identities=24% Similarity=0.235 Sum_probs=96.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeE
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 345 (666)
...|+|+|++|+|||||+|+|++... ......+.|++.....+...+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-------------------------------~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-------------------------------KVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCcccccCCEEEEEEECCEE
Confidence 44599999999999999999994321 01122456766666677777889
Q ss_pred EEEEeCCCccc--------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc---CCCcEEEEEec
Q 005973 346 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNK 414 (666)
Q Consensus 346 i~liDTPGh~~--------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVViNK 414 (666)
+.|+||||+.. .+..++..+..+|++++|+|++++... ...+......++..+ +.| +|+|+||
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~-----~~~~~~~~~~~L~~l~~~~~p-~ilV~NK 301 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENL-----LIETLQSSFEILREIGVSGKP-ILVTLNK 301 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHH-----HHHHHHHHHHHHHHHTCCSCC-EEEEEEC
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcch-----HHHHHHHHHHHHHHhCcCCCC-EEEEEEC
Confidence 99999999722 134456678899999999999875200 012222333445554 455 8999999
Q ss_pred cccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 415 ~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+..... ......+..+...+.. ...+++++||++|.|+.+
T Consensus 302 ~Dl~~~~~---~~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 302 IDKINGDL---YKKLDLVEKLSKELYS--PIFDVIPISALKRTNLEL 343 (364)
T ss_dssp GGGCCSCH---HHHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHH
T ss_pred CCCCCchH---HHHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHH
Confidence 99975321 1112222222222211 123679999999999966
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.60 E-value=9.9e-16 Score=169.96 Aligned_cols=143 Identities=25% Similarity=0.242 Sum_probs=90.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|++|+|||||+|+|++....+.. ..+|+|.+.....+..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~------------------------------~~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT------------------------------DLPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS------------------------------CCTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCeeEEEEEEEEEECCE
Confidence 3578999999999999999999965332211 1245666655455666788
Q ss_pred EEEEEeCCCccchHH--------HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 345 ~i~liDTPGh~~f~~--------~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.+.||||||+.++.. .....+..+|++|+|+|++.+. ..+..+.+..+. ..| +|+|+||+|
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~--------~~~~~~i~~~l~--~~p-iivV~NK~D 341 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGW--------TTGDQEIYEQVK--HRP-LILVMNKID 341 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCS--------CHHHHHHHHHHT--TSC-EEEEEECTT
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCC--------CHHHHHHHHhcc--CCc-EEEEEECCC
Confidence 999999999866532 2344677899999999998763 233444444332 245 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+..... .. .++.+. ...+++++||++|.|+.+
T Consensus 342 l~~~~~--~~--------~~~~~~---~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 342 LVEKQL--IT--------SLEYPE---NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp SSCGGG--ST--------TCCCCT---TCCCEEEEBTTTTBSHHH
T ss_pred CCcchh--hH--------HHHHhc---cCCcEEEEECCCCCCHHH
Confidence 975321 11 111111 235789999999999976
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.39 E-value=7.4e-17 Score=158.29 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=95.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEE--EEEec
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDS 341 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~--~~~~~ 341 (666)
.+.++|+|+|++|+|||||+++|++..- ... ...++.+... ..+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~------------------------------~~~t~~~~~~~~~~~~~ 75 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGE------------------------------YIPTVFDNYSANVMVDG 75 (204)
Confidence 4578999999999999999999984311 000 0011111111 12223
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEecccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~ 419 (666)
....+.||||||+.+|......++..+|++|+|+|++.+.... . .....+..+... ++| +|+|+||+|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~---~---~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~ 148 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE---N---VRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
Confidence 4456779999999999888888889999999999998753211 1 111222333333 666 899999999975
Q ss_pred ccch--hh------hHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKD--RF------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e--~~------~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.... .+ .....+...+.+.+++ .+++++||++|.|+.+
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
Confidence 2110 00 0111222333333332 3689999999999976
No 163
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=5.8e-15 Score=147.19 Aligned_cols=152 Identities=17% Similarity=0.116 Sum_probs=89.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|.+|+|||||+++|++....+.... ...|.+.......++....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~----------------------------~~~g~d~~~~~i~~~~~~~ 87 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC----------------------------EVLGEDTYERTLMVDGESA 87 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEEEEEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC----------------------------CccceeeEEEEEEECCeee
Confidence 468999999999999999999984322111100 0012121112222222334
Q ss_pred EEEEEeCCCccch-HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccc
Q 005973 345 HVVVLDSPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 345 ~i~liDTPGh~~f-~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~ 419 (666)
.+.+|||+|.... ......+++.+|++|+|+|.+... .|. ...+.+..+.. .++| +|+|+||+|+..
T Consensus 88 ~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~---sf~----~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~ 159 (211)
T 2g3y_A 88 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFE----KASELRIQLRRARQTEDIP-IILVGNKSDLVR 159 (211)
T ss_dssp EEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH---HHH----HHHHHHHHHHTSGGGTTSC-EEEEEECTTCGG
T ss_pred EEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhCCCCCc-EEEEEEChHHhc
Confidence 6789999998763 323334467799999999998642 111 11122222322 2567 999999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... .+...+...++ ++++++||++|+|+.+
T Consensus 160 ~r~v~~----~e~~~~a~~~~-----~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 160 CREVSV----SEGRACAVVFD-----CKFIETSAAVQHNVKE 192 (211)
T ss_dssp GCCSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred CceEeH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 211111 11222222333 4789999999999976
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=1.9e-14 Score=151.31 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=97.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
..++|+++|.+|+|||||+++|+..... . ...+++.+.....+...+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~------------------------------~~~~t~~~~~~~~~~~~~~ 201 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--G------------------------------EYIPTVFDNYSANVMVDGK 201 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--C------------------------------SCCCCSEEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--c------------------------------ccCCcccceeEEEEEECCE
Confidence 4689999999999999999999843110 0 011222232233334444
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc--CCCcEEEEEeccccccc
Q 005973 344 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 -~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|......++..+|++|+|+|++.+.. + .......+..+... ++| +|+|+||+|+...
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---F---HHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 274 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTC
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhhCCCCc-EEEEEEchhcccc
Confidence 455699999999998888888899999999999987521 1 11111222333333 667 9999999999742
Q ss_pred cchhhhH---------HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~---------i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.. ..+. ...+...+.+..++ .+++++||++|.|+.+
T Consensus 275 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 275 KD-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 319 (332)
T ss_dssp HH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred cc-hhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence 11 1000 11233344444432 3789999999999966
No 165
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.56 E-value=3.3e-15 Score=159.63 Aligned_cols=149 Identities=18% Similarity=0.155 Sum_probs=96.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-e
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-~ 344 (666)
..+|+|+|.+|||||||+++|+.....+ ...+.+|++.....+...+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCCCc
Confidence 4579999999999999999998432211 1123445555555566654 7
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-----cCCCcEEEEE
Q 005973 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAV 412 (666)
Q Consensus 345 ~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVi 412 (666)
.+.||||||+.+ +...+++.+..+|++|+|||++...... ........+..+.. .++| +|+|+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~----~~~~~~~~~~eL~~~~~~l~~~p-~ilV~ 281 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRD----PYDDYLTINQELSEYNLRLTERP-QIIVA 281 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCC----HHHHHHHHHHHHHHSCSSTTTSC-BCBEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccC----hHHHHHHHHHHHHHhhhhhcCCC-EEEEE
Confidence 899999999643 4466677777899999999997521011 11222333344444 2566 89999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+... .+.+ +++.. .+.. ..+++++||++++|+.+
T Consensus 282 NK~Dl~~~-~e~~----~~l~~---~l~~---~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 282 NKMDMPEA-AENL----EAFKE---KLTD---DYPVFPISAVTREGLRE 319 (342)
T ss_dssp ECTTSTTH-HHHH----HHHHH---HCCS---CCCBCCCSSCCSSTTHH
T ss_pred ECccCCCC-HHHH----HHHHH---Hhhc---CCCEEEEECCCCcCHHH
Confidence 99999742 1111 22222 2221 14679999999999966
No 166
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.56 E-value=1.3e-14 Score=141.55 Aligned_cols=152 Identities=17% Similarity=0.128 Sum_probs=86.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|.+|+|||||+++|++....+.... ...|.+.......++....
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 56 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTYERTLMVDGESA 56 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEEEEEEEECCeEE
Confidence 468999999999999999999995433221110 0012121111222222334
Q ss_pred EEEEEeCCCccch-HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecccccc
Q 005973 345 HVVVLDSPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 345 ~i~liDTPGh~~f-~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~Dlv~ 419 (666)
.+.+|||+|.... ......+++.+|++|+|+|.+... .|. ...+.+..+.. .++| +|+|.||+|+..
T Consensus 57 ~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~----~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~ 128 (192)
T 2cjw_A 57 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFE----KASELRIQLRRARQTEDIP-IILVGNKSDLVR 128 (192)
T ss_dssp EEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHTTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhhCCCCCe-EEEEEechhhhc
Confidence 6678999997652 112223456699999999998642 111 11122222222 2566 999999999874
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...-.. .+...+...++ .+++++||++|.|+.+
T Consensus 129 ~r~v~~----~~~~~~a~~~~-----~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 129 XREVSV----SEGRAXAVVFD-----XKFIETSAAVQHNVKE 161 (192)
T ss_dssp GCCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred cccccH----HHHHHHHHHhC-----CceEEeccccCCCHHH
Confidence 211111 11122222222 4789999999999976
No 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.56 E-value=8.5e-15 Score=141.44 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=89.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEe-----
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 340 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~----- 340 (666)
.++|+|+|.+|+|||||+++|++...... ....+.+.++.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~-----------------------------~~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDL-----------------------------GMQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccC-----------------------------CCcceeccEEeEEeeeccccCC
Confidence 36899999999999999999984211100 00111222232222222
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv 418 (666)
.....+.||||||+++|......++..+|++++|+|.+.+. ..+. .....+..+.. .++| +|+|.||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s~~----~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AEVD----AMKPWLFNIKARASSSP-VILVGTHLDVS 125 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HHHH----THHHHHHHHHHHCTTCE-EEEEEECGGGC
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hHHH----HHHHHHHHHHhhCCCCc-EEEEEECCCcc
Confidence 24567899999999888776666778899999999998651 0111 11122222222 2566 89999999997
Q ss_pred cccchhhhH-HHHHHhhhhhhcCcCCCCCcEEEeecccCC-Cccc
Q 005973 419 QYSKDRFDS-IKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 461 (666)
Q Consensus 419 ~~~~e~~~~-i~~el~~~l~~~~~~~~~i~iIpvSA~tG~-nI~e 461 (666)
.. ..... .......+.+.+++. ...+++++||++|. |+.+
T Consensus 126 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~~~ 167 (184)
T 2zej_A 126 DE--KQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDALAK 167 (184)
T ss_dssp CH--HHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHHHH
T ss_pred cc--hhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhHHH
Confidence 42 12111 122223344334431 01138999999996 8855
No 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=5.6e-15 Score=146.18 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=85.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++...... .....++++.+ ...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----------------------------~~~~~~~~~~~-------~~~ 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----------------------------VVSQEPLSAAD-------YDG 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----------------------------CCCSSCEEETT-------GGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----------------------------eeecCceEEEE-------eeC
Confidence 4568999999999999999999995421100 00011111111 145
Q ss_pred eEEEEEeCCCccchHHHHHHhccc----CCEEEEEEeCC-CCccccccccchhHHHHHHHHHHH------cCCCcEEEEE
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~----aD~aIlVVDa~-~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVi 412 (666)
..+.||||||+.+|...+..++.. +|++|+|+|++ ... .+ .........++.. .++| +|+|+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 127 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KL---TTTAEFLVDILSITESSCENGID-ILIAC 127 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CC---HHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HH---HHHHHHHHHHHhcccccccCCCC-EEEEE
Confidence 679999999999998777777766 89999999998 321 11 1222222223222 3677 99999
Q ss_pred eccccccccc-h-hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCc
Q 005973 413 NKMDAVQYSK-D-RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (666)
Q Consensus 413 NK~Dlv~~~~-e-~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI 459 (666)
||+|+..... . ..+.+.+++..+....+ .+++++||++|.+-
T Consensus 128 nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 128 NKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp ECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred EchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 9999985322 1 11223333444433333 36789999998874
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=145.35 Aligned_cols=149 Identities=16% Similarity=0.194 Sum_probs=90.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|++|+|||||+++|++...... .....++|.+.....+...+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 77 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS-----------------------------GTAAKSITKKCEKRSSSWKE 77 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc-----------------------------CCCCCceeeeEEEEEEEeCC
Confidence 4578999999999999999999995322110 01112566666666777788
Q ss_pred eEEEEEeCCCcc-----------chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-H----HcCCCc
Q 005973 344 YHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-R----SFGVDQ 407 (666)
Q Consensus 344 ~~i~liDTPGh~-----------~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~----~lgip~ 407 (666)
..+.||||||+. .+...+...+..+|++|+|+|+.... ....+.+..+ . ....|
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~~~~~~~~~~~~~- 147 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEKILKMFGERARSF- 147 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHHHHHHHHHHHGGG-
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHHHHHHhhhhccce-
Confidence 999999999943 45555555667789999999987531 1222222222 1 23345
Q ss_pred EEEEEeccccccccc-h-hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccC
Q 005973 408 LIVAVNKMDAVQYSK-D-RFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (666)
Q Consensus 408 iIVViNK~Dlv~~~~-e-~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG 456 (666)
+|+|+||+|+..... + .+....+.+..+++.++. .++++++..+
T Consensus 148 ~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 193 (239)
T 3lxx_A 148 MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKAT 193 (239)
T ss_dssp EEEEEECGGGC------------CHHHHHHHHHHSS-----SEEECCTTCC
T ss_pred EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCCC
Confidence 999999999875211 1 111112346666666663 4566666543
No 170
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=1.2e-14 Score=149.25 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
++.++|+|+|++|+|||||+++|++..... .....++|.......+...+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------------------------VSPFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC------------------------------CCSSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcceeeEEEEEEECC
Confidence 467999999999999999999999542211 11224556666666777788
Q ss_pred eEEEEEeCCCccchH-------HHHHHhc--ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cC---CCcEEE
Q 005973 344 YHVVVLDSPGHKDFV-------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIV 410 (666)
Q Consensus 344 ~~i~liDTPGh~~f~-------~~~~~~~--~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lg---ip~iIV 410 (666)
..++||||||+.+|. ..+...+ ..+|++|+|+++....+ .......+..+.. ++ ..++|+
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~-------~~~~~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV-------DELDKQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC-------CHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC-------CHHHHHHHHHHHHHhchhhhcCEEE
Confidence 999999999987652 2222222 26899999988865422 1233344444443 23 124899
Q ss_pred EEeccccccccchhhhH
Q 005973 411 AVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 411 ViNK~Dlv~~~~e~~~~ 427 (666)
|+||+|+...+...+++
T Consensus 157 v~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 157 VLTHAQFSPPDELSYET 173 (262)
T ss_dssp EEECTTCCCSTTCCHHH
T ss_pred EEeCcccCCCCCccHHH
Confidence 99999997543333333
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.54 E-value=2.2e-14 Score=149.15 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=66.1
Q ss_pred CeEEEEEeCCCcc-------------chHHHHHHhcccCCEEE-EEEeCCCCccccccccchhHH-HHHHHHHHHcCCCc
Q 005973 343 NYHVVVLDSPGHK-------------DFVPNMISGATQSDAAI-LVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (666)
Q Consensus 343 ~~~i~liDTPGh~-------------~f~~~~~~~~~~aD~aI-lVVDa~~g~~e~~~~~~~~qt-~e~l~ll~~lgip~ 407 (666)
...++||||||+. .+...+..++..++.+| +|+|++.+. ..+. ...+..+...+.|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~~~~~~~~~~~~- 194 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR- 194 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG--------GGCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch--------hhhHHHHHHHHhCCCCCe-
Confidence 4789999999964 34455666777888776 689998752 2233 2344555556777
Q ss_pred EEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 408 iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+|+||+|+.+..... .+.+...+..+. ....+++++||++|.|+.+
T Consensus 195 ~i~V~NK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 195 TIGVITKLDLMDEGTDA----RDVLENKLLPLR--RGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp EEEEEECGGGSCTTCCC----HHHHTTCSSCCT--TCEEECCCCCCBCTTSCBC
T ss_pred EEEEEEccccCCCCchH----HHHHhCCcCcCC--CCcEEEECCChhhcccccc
Confidence 99999999998532211 112222111111 1123678999999999976
No 172
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=5.7e-14 Score=144.86 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+++|++|+|||||+|+|++..... .....++|.......+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS------------------------------ISPFQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCcceeeEEEEEeeCC
Confidence 357899999999999999999999532111 11123445555555667788
Q ss_pred eEEEEEeCCCccchH-------HHHHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCC---CcEEE
Q 005973 344 YHVVVLDSPGHKDFV-------PNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQLIV 410 (666)
Q Consensus 344 ~~i~liDTPGh~~f~-------~~~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgi---p~iIV 410 (666)
..++||||||+.++. ..+..+ ...+|++|+|+|++... +.....+.+..+.. ++. .++|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-------CCHHHHHHHHHHHHHhCcccccCEEE
Confidence 899999999987653 222222 23699999999886432 12233344444433 342 24999
Q ss_pred EEecccccccc
Q 005973 411 AVNKMDAVQYS 421 (666)
Q Consensus 411 ViNK~Dlv~~~ 421 (666)
|+||+|+....
T Consensus 160 V~nK~Dl~~~~ 170 (270)
T 1h65_A 160 ALTHAQFSPPD 170 (270)
T ss_dssp EEECCSCCCGG
T ss_pred EEECcccCCcC
Confidence 99999997543
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=7.4e-14 Score=150.02 Aligned_cols=151 Identities=22% Similarity=0.305 Sum_probs=95.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+++|++|+|||||+++|++.... .....+.|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------------------------IASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------------------------EECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCeeeceeEEEEEecC
Confidence 35689999999999999999999843210 11123445555555666678
Q ss_pred eEEEEEeCCCccchH---------HHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEe
Q 005973 344 YHVVVLDSPGHKDFV---------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVN 413 (666)
Q Consensus 344 ~~i~liDTPGh~~f~---------~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViN 413 (666)
..+.||||||+.++. .........+|++|+|+|++.+. +++ +..+......+.... +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~-~~~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFP-LEEQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSC-HHHHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCC-HHHHHHHHHHHHHhcCCCC-EEEEEE
Confidence 889999999975431 12222334699999999987642 010 122222222223323 677 999999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|+... ..++ ++..++...+ ++++++||++|+|+.+
T Consensus 289 K~Dl~~~--~~~~----~~~~~~~~~~-----~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 289 KIDVADE--ENIK----RLEKFVKEKG-----LNPIKISALKGTGIDL 325 (357)
T ss_dssp CTTTCCH--HHHH----HHHHHHHHTT-----CCCEECBTTTTBTHHH
T ss_pred CcccCCh--HHHH----HHHHHHHhcC-----CCeEEEeCCCCcCHHH
Confidence 9999742 2222 2223333322 4689999999999976
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.52 E-value=2.3e-14 Score=162.08 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEE----E
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA----Y 338 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~----~ 338 (666)
....++|+++|.+|+|||||+++|++.... .. .....|+++..... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~---------------------------~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--PK---------------------------ESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC--CC---------------------------CCCccceEEEEeccccccc
Confidence 356799999999999999999999943110 00 00011111111100 0
Q ss_pred E----ecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC--CCcEEEEE
Q 005973 339 F----DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAV 412 (666)
Q Consensus 339 ~----~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg--ip~iIVVi 412 (666)
+ ...+..+.||||||++.|.......++.+|++|+|+|++.. ......+..+..++ .| +|+|+
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~~~~p-vilV~ 157 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYGGKSP-VIVVM 157 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHSSSCC-EEEEE
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhCCCCC-EEEEE
Confidence 1 12357899999999998887777778889999999999753 23344455555554 67 99999
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|+........ +++...+...+ .+++++||++|.|+.+
T Consensus 158 NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 158 NKIDENPSYNIEQ----KKINERFPAIE-----NRFHRISCKNGDGVES 197 (535)
T ss_dssp CCTTTCTTCCCCH----HHHHHHCGGGT-----TCEEECCC-----CTT
T ss_pred ECCCcccccccCH----HHHHHHHHhcC-----CceEEEecCcccCHHH
Confidence 9999975322121 33344444444 3689999999999976
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.50 E-value=1.7e-13 Score=133.88 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=93.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC--
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-- 343 (666)
.++|+|+|+.|+|||||+++|++..... ...+.++.+.....+...+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCCSCEEEEEEEEETTEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceeEEEEEEEECCEE
Confidence 5899999999999999999999532111 1112222233333333444
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEeccccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~~ 420 (666)
..+.||||||+.+|.......+..+|++|+|+|+..... + ......+..+.. .+.| +++|+||+|+...
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y----ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 567799999998886666666678999999999986421 1 111122222222 2455 8999999999743
Q ss_pred cchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.....+ +...++...+ +.++.+||+++.|+.+
T Consensus 126 ~~~~~~----~a~~l~~~~~-----~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 126 RAVPTD----EARAFAEKNN-----LSFIETSALDSTNVEE 157 (199)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cCcCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 221111 2233333333 5789999999999976
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=1.7e-13 Score=134.47 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=91.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
...+|+|+|++|+|||||+++|++.... .......|.|.......+. +
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~-----------------------------~~~~~~~G~~~~~~~~~~~--~- 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSL-----------------------------ARTSKTPGRTQLINLFEVA--D- 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEEEE--T-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-----------------------------ccccCCCccceeeEEEEec--C-
Confidence 4578999999999999999999843200 0001123555443333332 2
Q ss_pred EEEEEeCCCccc----------hHHHH---HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEE
Q 005973 345 HVVVLDSPGHKD----------FVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (666)
Q Consensus 345 ~i~liDTPGh~~----------f~~~~---~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 411 (666)
.+.|+||||+.. |...+ ......++.+++|+|+..+. .....+...++...++| +++|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~~~v 143 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--------KDLDQQMIEWAVDSNIA-VLVL 143 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEEE
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--------chhHHHHHHHHHHcCCC-eEEE
Confidence 678999999742 22222 22235689999999998752 12333455566778888 8889
Q ss_pred EeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 412 iNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.||+|+... ...+.....+..++...+ ..+.++|+||+++.|+.+
T Consensus 144 ~nK~D~~s~--~~~~~~~~~~~~~~~~~~---~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 144 LTKADKLAS--GARKAQLNMVREAVLAFN---GDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp EECGGGSCH--HHHHHHHHHHHHHHGGGC---SCEEEEECBTTTTBSHHH
T ss_pred EecccCCCc--hhHHHHHHHHHHHHHhcC---CCCceEEEeecCCCCHHH
Confidence 999998742 111111233444444332 135679999999999965
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=1.1e-13 Score=145.28 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCeEEEEEeCCCccc-------------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcE
Q 005973 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (666)
Q Consensus 342 ~~~~i~liDTPGh~~-------------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 408 (666)
....++||||||+.+ +...+..++..+|++|+|+|+....+. ..+....+..+...+.| +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~------~~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA------NSDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST------TCSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh------hhHHHHHHHHhCCCCCc-E
Confidence 457899999999754 556667788899999999997432111 11223455556666787 9
Q ss_pred EEEEeccccccc
Q 005973 409 IVAVNKMDAVQY 420 (666)
Q Consensus 409 IVViNK~Dlv~~ 420 (666)
|+|+||+|+...
T Consensus 202 i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 202 IGVITKLDLMDK 213 (315)
T ss_dssp EEEEECTTSSCS
T ss_pred EEEEcCcccCCc
Confidence 999999999854
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.45 E-value=4.3e-13 Score=156.07 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=49.1
Q ss_pred eEEEEEeCCCccc---hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHH-HHHHHcCCCcEEEEEecccccc
Q 005973 344 YHVVVLDSPGHKD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 344 ~~i~liDTPGh~~---f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l-~ll~~lgip~iIVViNK~Dlv~ 419 (666)
..+.||||||+.+ ....+..++..+|++|+|+|++.+. .....+.+ ..+...+.| +|+|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~--------s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC--------TLGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT--------CHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc--------chhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999655 4455667788899999999998762 22333333 234455777 999999999974
No 179
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=144.35 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=47.7
Q ss_pred cCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCC
Q 005973 367 QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASL 446 (666)
Q Consensus 367 ~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i 446 (666)
.||++|+|+|++... ...+..+.....+........++| +|+|+||+|+.. .... ++...+.+.. ..+
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~--~~~v----~~~~~~~~~~----~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV--ERYI----RDAHTFALSK----KNL 229 (255)
T ss_dssp ECCEEEEEEECBC-----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC--HHHH----HHHHHHHHTS----SSC
T ss_pred cCCEEEEEEECCCCc-hhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc--cHHH----HHHHHHHHhc----CCC
Confidence 699999999998740 001111111111111111234677 999999999963 2222 2333443321 135
Q ss_pred cEEEeecccCCCccc
Q 005973 447 TWIPLSALENQNLVT 461 (666)
Q Consensus 447 ~iIpvSA~tG~nI~e 461 (666)
+++++||++|.|+.+
T Consensus 230 ~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 230 QVVETSARSNVNVDL 244 (255)
T ss_dssp CEEECBTTTTBSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 789999999999966
No 180
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.43 E-value=1e-12 Score=127.83 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=93.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+|+|+.|+|||||+++|++.... ....+.++.+.....+...+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-------------------------------LESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC-------------------------------CSCCCCCSEEEEEEEEEETTE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceEEEEEEEEECCE
Confidence 4689999999999999999999853211 111123333333344444444
Q ss_pred --EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH---cCCCcEEEEEecccccc
Q 005973 345 --HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 345 --~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVViNK~Dlv~ 419 (666)
.+.+|||||+.++...+...+..++++|+|+|...... + ......+..+.. .+.+ +++|+||+|+..
T Consensus 77 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y----ENVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H----HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 45679999998877666666778999999999876411 1 011112222222 2445 899999999974
Q ss_pred ccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 420 ~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...... .....++... .+.++.+||+++.|+.+
T Consensus 149 ~~~~~~----~~a~~l~~~~-----~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 149 LRAVPT----DEARAFAEKN-----GLSFIETSALDSTNVEA 181 (191)
T ss_dssp GCCSCH----HHHHHHHHHT-----TCEEEECCTTTCTTHHH
T ss_pred ccccCH----HHHHHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 322222 1223333332 35789999999999965
No 181
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=7.8e-14 Score=134.94 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=75.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
...++|+|+|+.|+|||||+++|++...... .....++++.+ ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----------------------------~~~~~~~~~~~-------~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----------------------------VVSQEPLSAAD-------YDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------C-------CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc----------------------------cccCCCceeee-------ecC
Confidence 4568999999999999999999995421100 00011122211 155
Q ss_pred eEEEEEeCCCccchHHHHHHhccc----CCEEEEEEeCC-CCccccccccchhHHHHHHHHHHH------cCCCcEEEEE
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~----aD~aIlVVDa~-~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVi 412 (666)
..+.||||||+..|...+..++.. +|++|+|+|++ ... .+ .....+...++.. .++| +++|+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KL---TTTAEFLVDILSITESSCENGID-ILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHH---HH---HHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCch---hH---HHHHHHHHHHHhhhhhccccCCC-EEEEE
Confidence 678999999998875555444443 89999999998 321 11 1111112222221 2677 99999
Q ss_pred eccccccccchhhhHHHHHHhhh
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTF 435 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~ 435 (666)
||+|+... ...+.+.+.+...
T Consensus 164 nK~Dl~~~--~~~~~~~~~l~~~ 184 (193)
T 2ged_A 164 NKSELFTA--RPPSKIKDALESE 184 (193)
T ss_dssp ECTTSTTC--CCHHHHHHHHHHH
T ss_pred EchHhcCC--CCHHHHHHHHHHH
Confidence 99999853 2233444444433
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.42 E-value=1.7e-13 Score=144.71 Aligned_cols=156 Identities=14% Similarity=0.177 Sum_probs=94.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEEE
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i~ 347 (666)
||+++|..|+|||||++++.+.... .. ....+.|+.+.+..+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~--~~----------------------------~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP--LD----------------------------TLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS--GG----------------------------GTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC--Cc----------------------------cceecCeeeeeeEEEc-cEEEEE
Confidence 5899999999999999987632110 00 0011223322222232 347899
Q ss_pred EEeCCCccchHH---HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH--cCCCcEEEEEeccccccccc
Q 005973 348 VLDSPGHKDFVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (666)
Q Consensus 348 liDTPGh~~f~~---~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVViNK~Dlv~~~~ 422 (666)
||||||+++|.. .+..+++.++++|+|+|++.. +...+ ....+.+..+.. -++| +++|+||+|+...+.
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~----~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~ 123 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI----TNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDF 123 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH----HHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH----HHHHHHHHHHhhcCCCCc-EEEEEECcccCchhh
Confidence 999999999963 346678999999999999875 32211 122222332222 3566 899999999985321
Q ss_pred --hhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 423 --DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 423 --e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+..+.+..+..+.+...++....++|+.+||++ .||.+
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 112334444444343333222357899999997 58865
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=4.7e-13 Score=145.81 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=46.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEE--Ee----
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FD---- 340 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~--~~---- 340 (666)
++|+|+|++|+|||||+|+|++.. ... ...+++|++..... +.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~------------------------------~~~p~tT~~~~~g~~~~~~~~~ 49 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEI------------------------------ANYPFTTIEANVGVTYAITDHP 49 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------------------------------------CCEEEEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-Ccc------------------------------cCCCCcccCCceEEEeeccCCc
Confidence 479999999999999999999543 110 01123333322211 11
Q ss_pred ---------------cC---CeEEEEEeCCCccch-------HHHHHHhcccCCEEEEEEeCCCC
Q 005973 341 ---------------SK---NYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 380 (666)
Q Consensus 341 ---------------~~---~~~i~liDTPGh~~f-------~~~~~~~~~~aD~aIlVVDa~~g 380 (666)
.. ...+.||||||+.+. ....+..++.+|++|+|+|+..+
T Consensus 50 ~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 50 CKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp CSSSCCSCCCSSSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred hHHhhhhcccccccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 257999999997542 12223456889999999999875
No 184
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=143.16 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=75.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
..++|+|+|++|+|||||+++|++..... ... ......+..++++++.....+...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~-~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYP-ERV---------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC-------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCC-CCc---------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 35789999999999999999997431110 000 0001111223344443333334344
Q ss_pred -eEEEEEeCCCcc-------chHH----------HHHHhcc----------cCCEEEEEEeCCCCccccccccchhHHHH
Q 005973 344 -YHVVVLDSPGHK-------DFVP----------NMISGAT----------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (666)
Q Consensus 344 -~~i~liDTPGh~-------~f~~----------~~~~~~~----------~aD~aIlVVDa~~g~~e~~~~~~~~qt~e 395 (666)
..++||||||+. .|.. ..+.... .++++|++|+..... +.....+
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~-------l~~~d~~ 166 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-------LKPLDVA 166 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSS-------CCHHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCC-------cchhHHH
Confidence 368999999983 3321 1111111 135788888863321 2233333
Q ss_pred HHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCC
Q 005973 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 458 (666)
Q Consensus 396 ~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~n 458 (666)
.+..+ ..++| +|+|+||+|+.. ...+.....++..+++..+ ++++++||++|.|
T Consensus 167 ~~~~l-~~~~p-iIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 167 FMKAI-HNKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAESDE 220 (361)
T ss_dssp HHHHT-CS-SC-EEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC------
T ss_pred HHHHh-ccCCC-EEEEEECCCCCC--HHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc
Confidence 33333 24567 999999999974 3334444456666665544 4789999999998
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=3.1e-12 Score=137.37 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=65.9
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..++.++||||||...-. ...+..+|++|+|+|+..+... ..+.. ..+.+| +|+|+||+|+..
T Consensus 169 ~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~---~~l~~---------~~~~~p-~ivVlNK~Dl~~- 231 (355)
T 3p32_A 169 AAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQL---QGIKK---------GVLELA-DIVVVNKADGEH- 231 (355)
T ss_dssp HTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTT---TTCCT---------TSGGGC-SEEEEECCCGGG-
T ss_pred hCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccH---HHHHH---------hHhhcC-CEEEEECCCCcC-
Confidence 367889999999965432 2234789999999998765311 11110 112346 799999999974
Q ss_pred cchhhhHHHHHHhhhhhhcCcCC--CCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~~--~~i~iIpvSA~tG~nI~e 461 (666)
...+....+++...+..+.... ...+++++||++|+|+.+
T Consensus 232 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~ 273 (355)
T 3p32_A 232 -HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHH
T ss_pred -hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHH
Confidence 2334444555555544332111 135799999999999976
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.32 E-value=2.6e-12 Score=140.50 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=91.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-eE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 345 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~-~~ 345 (666)
..|+|+|++|||||||+++|++....+. ..+.+|+......+...+ ..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------------------------~~~ftTl~p~~G~V~~~~~~~ 206 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------------------------PYPFTTLSPNLGVVEVSEEER 206 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC-------------------------------CCTTCSSCCEEEEEECSSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc-------------------------------CcccceecceeeEEEecCcce
Confidence 4599999999999999999985422111 012233333344444443 78
Q ss_pred EEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH-cCCCcEEEEEecccc
Q 005973 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 417 (666)
Q Consensus 346 i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVViNK~Dl 417 (666)
++++||||+.+ +....+..+..++.+|+|+|++.. .+..+.....+...+... ...| .|+|+||+|+
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~----~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl 281 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE----PLKTLETLRKEVGAYDPALLRRP-SLVALNKVDL 281 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSC----HHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTT
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccC----CHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCCh
Confidence 99999999743 223345556779999999999711 111111222233333332 3456 7888999998
Q ss_pred ccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... .. ...+...++..+ ++++++||++++|+.+
T Consensus 282 ~~~--~~----~~~l~~~l~~~g-----~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 282 LEE--EA----VKALADALAREG-----LAVLPVSALTGAGLPA 314 (416)
T ss_dssp SCH--HH----HHHHHHHHHTTT-----SCEEECCTTTCTTHHH
T ss_pred hhH--HH----HHHHHHHHHhcC-----CeEEEEECCCccCHHH
Confidence 742 22 233334443323 4789999999999976
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.31 E-value=1.8e-12 Score=139.00 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=60.9
Q ss_pred CCeEEEEEeCCCcc-------------chHHHHHHhcccCC-EEEEEEeCCCCccccccccchhHHH-HHHHHHHHcCCC
Q 005973 342 KNYHVVVLDSPGHK-------------DFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSFGVD 406 (666)
Q Consensus 342 ~~~~i~liDTPGh~-------------~f~~~~~~~~~~aD-~aIlVVDa~~g~~e~~~~~~~~qt~-e~l~ll~~lgip 406 (666)
....++||||||.. .+...+..++..++ ++++|+|+..+. ..+.. ..+..+...+.|
T Consensus 128 ~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~--------~~~~~~~i~~~~~~~~~~ 199 (353)
T 2x2e_A 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKVAKEVDPQGQR 199 (353)
T ss_dssp TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG--------GGCHHHHHHHHHCTTCTT
T ss_pred CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc--------chhHHHHHHHHhCcCCCc
Confidence 35789999999963 23344455565554 555567776542 22222 344444455777
Q ss_pred cEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 407 ~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+|+|+||+|+.+...... ..+...+ ..+...-.+++++||++|.|+.+
T Consensus 200 -~i~V~NK~Dl~~~~~~~~----~~~~~~~--~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 200 -TIGVITKLDLMDEGTDAR----DVLENKL--LPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp -EEEEEECGGGSCTTCCCH----HHHTTCS--SCCTTCEEECCCCCHHHHHTTCC
T ss_pred -eEEEeccccccCcchhHH----HHHhCCc--ccccCCceEEEeCCccccccccc
Confidence 999999999985322111 1111111 11111113578899999999965
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.31 E-value=4.8e-12 Score=143.41 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=58.1
Q ss_pred eEEEEEeCCCccc-----------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEE
Q 005973 344 YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh~~-----------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVi 412 (666)
..++||||||+.+ |...+..++..+|++|+|+|++... ...+..+++..+...+.| +|+|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE-------ISDEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC-------CCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC-------CCHHHHHHHHHHHhcCCC-EEEEE
Confidence 3689999999875 6667777888999999999998631 234566667667666777 99999
Q ss_pred eccccccccchhhhHHHHHH
Q 005973 413 NKMDAVQYSKDRFDSIKVQL 432 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el 432 (666)
||+|++. .+.+..+...+
T Consensus 226 NK~Dl~~--~~el~~~~~~l 243 (550)
T 2qpt_A 226 NKADMVE--TQQLMRVYGAL 243 (550)
T ss_dssp ECGGGSC--HHHHHHHHHHH
T ss_pred ECCCccC--HHHHHHHHHHh
Confidence 9999984 33444444443
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.30 E-value=6.8e-12 Score=134.40 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=58.1
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..++.++|+||||..... ......+|++++|+|+..+.. .+ .+.. ..+..| .|+|+||+|+.+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~--------~~---~i~~-~il~~~-~ivVlNK~Dl~~~ 227 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE--------LQ---GIKR-GIIEMA-DLVAVTKSDGDLI 227 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------------------CCSC-SEEEECCCSGGGH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh--------HH---HhHH-HHHhcC-CEEEEeeecCCCc
Confidence 367889999999964222 223467999999999986520 11 1110 124566 6889999999742
Q ss_pred cchhhhHHHHHHhhhhhhcCcC--CCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~--~~~i~iIpvSA~tG~nI~e 461 (666)
........++...++..... ....+++++||++|+|+.+
T Consensus 228 --~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~ 268 (349)
T 2www_A 228 --VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268 (349)
T ss_dssp --HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHH
T ss_pred --hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHH
Confidence 22222223333333221100 0135789999999999966
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.29 E-value=3.9e-12 Score=135.79 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=63.0
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..++.++||||||+.++.... ...+|++|+|+|+..+.. +..+. . ...++| .++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~~~l~----~-----~~~~~p-~ivv~NK~Dl~~- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---LQGIK----K-----GLMEVA-DLIVINKDDGDN- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC---------CCCC----H-----HHHHHC-SEEEECCCCTTC-
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---HHHHH----H-----hhhccc-CEEEEECCCCCC-
Confidence 457899999999987765443 478999999999976521 11110 0 112456 689999999974
Q ss_pred cchhhhHHHHHHhhhhhhcCcC--CCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~--~~~i~iIpvSA~tG~nI~e 461 (666)
...+....+++...+..++.. ....+++++||++|.|+.+
T Consensus 209 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~ 250 (341)
T 2p67_A 209 -HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDE 250 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHH
T ss_pred -hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHH
Confidence 223333334444443332210 0124789999999999966
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=4.7e-12 Score=147.05 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc------cchhhh----hh----hHHHHhhhCCCcchhhhcccc------ccc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR------ITQKQM----HK----YEKEAKLQGKGSFAYAWALDE------SAE 324 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~------i~~~~~----~k----~~k~~~~~g~g~~~~~~~~d~------~~~ 324 (666)
..++|+|+|++++|||||+|+|++.... .++... .. +.......++.-..+...... ...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999975321 110000 00 000000000000000000000 000
Q ss_pred ccccCeEEEEEEEEEec-CCeEEEEEeCCCccc-------------hHHHHHHhc-ccCCEEEEEEeCCCCccccccccc
Q 005973 325 ERERGITMTVAVAYFDS-KNYHVVVLDSPGHKD-------------FVPNMISGA-TQSDAAILVIDASVGSFEVGMNTA 389 (666)
Q Consensus 325 e~~~GiTid~~~~~~~~-~~~~i~liDTPGh~~-------------f~~~~~~~~-~~aD~aIlVVDa~~g~~e~~~~~~ 389 (666)
....|++.+.....+.. ...+++|+||||... +...+..++ ..+|++|+|+|++.+.
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~-------- 201 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------- 201 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS--------
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc--------
Confidence 01234443433344333 456799999999533 223334444 4689999999998763
Q ss_pred hhHHH-HHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhh-hcCcCCCCCcEEEeecccCCCcccC
Q 005973 390 KGLTR-EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLR-SCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 390 ~~qt~-e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~-~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
..+.. ..+..+...+.| +|+|+||+|+++..... ..+.. ...+. .++| .+++++||++|.|+.++
T Consensus 202 ~~~d~l~ll~~L~~~g~p-vIlVlNKiDlv~~~~~~-~~il~--~~~~~l~lg~----~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 202 ANSDALKIAKEVDPQGQR-TIGVITKLDLMDEGTDA-RDVLE--NKLLPLRRGY----IGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp SSCHHHHHHHHHCTTCSS-EEEEEECTTSSCTTCCS-HHHHT--TCSSCCSSCE----EECCCCCCEESSSSEEH
T ss_pred chhHHHHHHHHHHhcCCC-EEEEEeCcccCCcchhh-HHHHH--HHhhhhhccC----CceEEecccccccchhH
Confidence 22333 556666667788 99999999998532221 11111 11110 1122 46789999999999764
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.27 E-value=6.8e-12 Score=134.74 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCeEEEEEeCCCccch-------------HHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcE
Q 005973 342 KNYHVVVLDSPGHKDF-------------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f-------------~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 408 (666)
....++||||||..++ ...+..++..+|++|||+|+..... ........+..+...+.+ +
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~------~~~~~~~l~~~~~~~~~~-~ 206 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL------ATSDAIKISREVDPSGDR-T 206 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG------GGCHHHHHHHHSCTTCTT-E
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc------CCHHHHHHHHHhcccCCC-E
Confidence 4567999999998776 5666777889999999998754311 112333444444445677 9
Q ss_pred EEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 409 IVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|+|+||+|+.+...... ..+...... ...+|+++|+.++.++.+.
T Consensus 207 i~V~nK~Dl~~~~~~~~----~~~~~~~~~-----~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 207 FGVLTKIDLMDKGTDAV----EILEGRSFK-----LKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEEEECGGGCCTTCCSH----HHHTTSSSC-----CSSCCEEECCCCHHHHHTT
T ss_pred EEEEeCCccCCCcccHH----HHHcCcccc-----ccCCeEEEEECChHHhccC
Confidence 99999999985322211 112222111 2357899999999988664
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.26 E-value=1.6e-12 Score=128.84 Aligned_cols=97 Identities=8% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccccccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~ 421 (666)
.+..++||||+|+.... . .....++.+|+|+|+..+. ..... .....+.| +++|+||+|+.+..
T Consensus 107 ~~~d~iiidt~G~~~~~-~--~~~~~~~~~i~vvd~~~~~---------~~~~~---~~~~~~~~-~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP-V--DFDLGENYRVVMVSVTEGD---------DVVEK---HPEIFRVA-DLIVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEBSSGG-G--GCCCSCSEEEEEEEGGGCT---------THHHH---CHHHHHTC-SEEEEECGGGHHHH
T ss_pred CCCCEEEEeCCCCCCCC-c--hhccccCcEEEEEeCCCcc---------hhhhh---hhhhhhcC-CEEEEecccCCcch
Confidence 45789999999952110 0 0113578999999998652 11111 22334677 78999999997421
Q ss_pred chhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 422 ~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
...++.+.+.+.. ++ ...+++++||++|.|+.+
T Consensus 171 ~~~~~~~~~~~~~----~~---~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 171 GADVEKMKADAKL----IN---PRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp TCCHHHHHHHHHH----HC---TTSEEEECBTTTTBTHHH
T ss_pred hhHHHHHHHHHHH----hC---CCCeEEEeecCCCCCHHH
Confidence 1233334333332 22 236789999999999966
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.7e-11 Score=132.12 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=84.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~ 343 (666)
....+|+|||.||+|||||+|+|++....+ ...+++|++.....+...+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-------------------------------~~~pftT~~~~~g~~~~~~ 118 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA-------------------------------AEYEFTTLVTVPGVIRYKG 118 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG-------------------------------GGTCSSCCCEEEEEEEETT
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCCceeeeeeEEEEeCC
Confidence 345789999999999999999999543222 2236789998888899999
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC----CCcEEEEE
Q 005973 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG----VDQLIVAV 412 (666)
Q Consensus 344 ~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg----ip~iIVVi 412 (666)
.++.|+||||..+ ....++..++.||++++|||+.++. .+.......+...+ -++.++++
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~---------~~~~~i~~EL~~~~~~l~~k~~~i~~ 189 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL---------HHKQIIEKELEGVGIRLNKTPPDILI 189 (376)
T ss_dssp EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH---------HHHHHHHHHHHHTTEEETCCCCCEEE
T ss_pred cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH---------HHHHHHHHHHHHhhHhhccCChhhhh
Confidence 9999999999543 4466778889999999999998752 12221222233332 22368899
Q ss_pred eccccc
Q 005973 413 NKMDAV 418 (666)
Q Consensus 413 NK~Dlv 418 (666)
||+|.-
T Consensus 190 nK~d~~ 195 (376)
T 4a9a_A 190 KKKEKG 195 (376)
T ss_dssp EECSSS
T ss_pred hHhhhh
Confidence 999964
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=2.4e-10 Score=116.19 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=61.9
Q ss_pred eEEEEEeCCCccchHH------HHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 344 YHVVVLDSPGHKDFVP------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~------~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
+.++||||||+.++.. .+...+.. +++|+|+|+........+ .......+......++| +++|+||+|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~---~~~~~~~~~~~~~~~~p-~~iv~NK~D~ 183 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDY---CFVRFFALLIDLRLGAT-TIPALNKVDL 183 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHH---HHHHHHHHHHHHHHTSC-EEEEECCGGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHH---HHHHHHHHHHhcccCCC-eEEEEecccc
Confidence 5799999999876532 23345566 899999998654211100 00111111223445788 8999999998
Q ss_pred ccccchhhhHHHHHH---hh---------------------hhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 418 VQYSKDRFDSIKVQL---GT---------------------FLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 418 v~~~~e~~~~i~~el---~~---------------------~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
... ...+.+.+.+ .. +++.++ ...+++++||++|+|+.+
T Consensus 184 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 184 LSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL---PPVRVLYLSAKTREGFED 246 (262)
T ss_dssp CCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS---CCCCCEECCTTTCTTHHH
T ss_pred ccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc---CcccceEEEecCcccHHH
Confidence 742 1121121111 11 122222 124679999999999966
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=3.6e-10 Score=121.24 Aligned_cols=82 Identities=18% Similarity=0.086 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC---
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--- 343 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~--- 343 (666)
++|+|+|.+|+|||||+|+|++....+. ..+++|++.....+...+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~-------------------------------~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA-------------------------------NYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc-------------------------------CCCCceECceEEEEecCCccc
Confidence 6799999999999999999996421110 112223332222222222
Q ss_pred --------------eEEEEEeCCCccchH-------HHHHHhcccCCEEEEEEeCCC
Q 005973 344 --------------YHVVVLDSPGHKDFV-------PNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 344 --------------~~i~liDTPGh~~f~-------~~~~~~~~~aD~aIlVVDa~~ 379 (666)
..+.||||||+.++. ...+..++.+|++|+|+|+..
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999987753 234556788999999999986
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=7.2e-10 Score=121.24 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
-.++|+|+|+.|+|||||+++|++........ +... .+ ....+........+...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~--------------~~~~----~~-----~~~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY--------------PGPS----HR-----IKKTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCC--------------CSCC--------------CCEEEEEECC------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCC--------------CCcc----cC-----CccceeeeeEEEEEecCCc
Confidence 45789999999999999999998542210000 0000 00 00111111111111212
Q ss_pred CeEEEEEeCCCccchHH------HHH--------H-----------hccc--CCEEEEEEeCC-CCccccccccchhHHH
Q 005973 343 NYHVVVLDSPGHKDFVP------NMI--------S-----------GATQ--SDAAILVIDAS-VGSFEVGMNTAKGLTR 394 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~------~~~--------~-----------~~~~--aD~aIlVVDa~-~g~~e~~~~~~~~qt~ 394 (666)
...+++|||||+..+.. .+. . .+.. ++++|++++.+ ++ +.....
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~--------L~~~d~ 158 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--------LKPLDI 158 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS--------CCHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC--------CCHHHH
Confidence 24689999999866421 110 1 1122 34556665554 33 234444
Q ss_pred HHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 395 e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+..+.. +++ +|+|+||+|+.. ...+...+.++...+...+ ++++.+||+++.++.+
T Consensus 159 ~~lk~L~~-~v~-iIlVinK~Dll~--~~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 159 EFMKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHHHTT-TSE-EEEEEESTTSSC--HHHHHHHHHHHHHHHHHHT-----CCCCCCC---------
T ss_pred HHHHHHhc-cCc-EEEEEEcccCcc--HHHHHHHHHHHHHHHHHcC-----CeEEeCCCCCCcCHHH
Confidence 45554443 676 999999999974 3445555566777776655 4678899999988854
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.02 E-value=8.2e-10 Score=115.80 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=72.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--C
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~ 342 (666)
-.++|+|+|+.|+|||||+++|.+........ +. ..|. ....++........++. .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-------~~g~--------------~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-------GAAE--------------KIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-------cCCc--------------ccCCcceEeeEEEEecCCCc
Confidence 35889999999999999999998431111000 00 0000 00001111111111221 2
Q ss_pred CeEEEEEeCCCc-------cchH---H-------HHHHhcc----------cCCEEEEEEeCCCCccccccccchhHHHH
Q 005973 343 NYHVVVLDSPGH-------KDFV---P-------NMISGAT----------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (666)
Q Consensus 343 ~~~i~liDTPGh-------~~f~---~-------~~~~~~~----------~aD~aIlVVDa~~g~~e~~~~~~~~qt~e 395 (666)
...+++|||||+ +.|. . .....+. .++++|++++.+.+. +.....+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~-------Ld~~~~~ 147 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-------LKPLDVA 147 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSS-------CCHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccC-------CCHHHHH
Confidence 457899999997 3322 1 1112111 134456666543321 2233333
Q ss_pred HHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 396 ~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.+..+. -+++ +++|+||.|+.. ...+....+++..+++..+ ++++++||++| |+.+
T Consensus 148 ~l~~l~-~~~~-iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~-~v~e 203 (301)
T 2qnr_A 148 FMKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAES-DEDE 203 (301)
T ss_dssp HHHHHT-TTSC-EEEEECCGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCCC---------
T ss_pred HHHHHH-hcCC-EEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEecCCccc-cccH
Confidence 333332 2345 899999999974 2333334556666666655 46799999999 9976
No 199
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.99 E-value=1.1e-09 Score=117.66 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=71.0
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCc---cccc-cccchhHHHHHHHHHHH----
Q 005973 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVG-MNTAKGLTREHAQLIRS---- 402 (666)
Q Consensus 331 Tid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~---~e~~-~~~~~~qt~e~l~ll~~---- 402 (666)
|+.+....|...+..+.||||+|++.|...+..++..++++|+|+|.+.-. +|.. ...+ ......+..+..
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIVNNRVF 266 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHHTCGGG
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHH-HHHHHHHHHHhcchhh
Confidence 444445567778899999999999999999999999999999999998620 0000 0111 122222222221
Q ss_pred cCCCcEEEEEecccccccc----------------chhhhHHHHHHhhhhhhcCcC--CCCCcEEEeecccCCCccc
Q 005973 403 FGVDQLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 403 lgip~iIVViNK~Dlv~~~----------------~e~~~~i~~el~~~l~~~~~~--~~~i~iIpvSA~tG~nI~e 461 (666)
.++| +|+|+||+|+.... ...+++..+-+...+..+.-. ...+.++++||++|.||.+
T Consensus 267 ~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 267 SNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp TTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred CCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 2456 99999999986310 011222222221111111110 2346789999999999976
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.96 E-value=9.8e-10 Score=118.31 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCccch-------HHHHHHhcccCCEEEEEEeCCC
Q 005973 343 NYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 343 ~~~i~liDTPGh~~f-------~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
+..+.||||||+.++ ....+..++.+|++|+|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357999999997653 3556777899999999999986
No 201
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.96 E-value=1.6e-09 Score=116.05 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=79.7
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCcc---ccc-cccchhHHHHHHHHHHH----
Q 005973 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF---EVG-MNTAKGLTREHAQLIRS---- 402 (666)
Q Consensus 331 Tid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~---e~~-~~~~~~qt~e~l~ll~~---- 402 (666)
|+.+....|...+..+.||||+|++.|...+..++..++++|+|+|.+.... |.. ...+ ......+..+..
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~-~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM-HESMKLFDSICNNKWF 258 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHH-HHHHHHHHHHHTCGGG
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhH-HHHHHHHHHHHcCccc
Confidence 4444555677788999999999999999999999999999999999986210 000 0111 122222222222
Q ss_pred cCCCcEEEEEecccccccc---------------chhhhHHHHHHhhhhhhcCc--CCCCCcEEEeecccCCCccc
Q 005973 403 FGVDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 403 lgip~iIVViNK~Dlv~~~---------------~e~~~~i~~el~~~l~~~~~--~~~~i~iIpvSA~tG~nI~e 461 (666)
.++| +|+|+||+|+.... ....++..+-+...+..+.. ....+.++++||++|.||.+
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 2456 99999999986210 01122222222222222211 12356789999999999976
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=2.9e-09 Score=105.57 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=54.3
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccch
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e 423 (666)
..+.++|++|..... ...-...+..++|+|+..+... . . .. ...++.| +++|+||+|+......
T Consensus 119 ~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~-----~---~-~~---~~~~~~~-~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 119 IDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDT-----I---E-KH---PGIMKTA-DLIVINKIDLADAVGA 182 (226)
T ss_dssp CSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTT-----T---T-TC---HHHHTTC-SEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhh-----H---h-hh---hhHhhcC-CEEEEeccccCchhHH
Confidence 468999999942211 0112345778888987543100 0 0 00 1124667 7999999999742111
Q ss_pred hhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 424 ~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
.++.+.+ .++.++ ...+++++||++|.|+.+
T Consensus 183 ~~~~~~~----~~~~~~---~~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 183 DIKKMEN----DAKRIN---PDAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CHHHHHH----HHHHHC---TTSEEEECCTTTCTTHHH
T ss_pred HHHHHHH----HHHHhC---CCCeEEEEEecCCCCHHH
Confidence 2333332 333222 235789999999999966
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.90 E-value=3e-09 Score=113.31 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred cCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccc
Q 005973 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (666)
Q Consensus 341 ~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~ 420 (666)
..+..++|+||||..+-.. .....+|++++|+|+..+.. ...+... + +.++ .++|+||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~~i~~~------i---~~~~-~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQGIKKG------I---FELA-DMIAVNKADDGDG 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCTT------H---HHHC-SEEEEECCSTTCC
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HHHHHHH------H---hccc-cEEEEEchhccCc
Confidence 4678999999999654321 22367999999999865420 0000000 0 1224 4677899997531
Q ss_pred cchhhhHHHHHHhhhhhhcCcC--CCCCcEEEeecccCCCccc
Q 005973 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 461 (666)
Q Consensus 421 ~~e~~~~i~~el~~~l~~~~~~--~~~i~iIpvSA~tG~nI~e 461 (666)
........+++...+..+... ....+++++||++|.|+.+
T Consensus 209 -~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~ 250 (337)
T 2qm8_A 209 -ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDS 250 (337)
T ss_dssp -HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHH
T ss_pred -hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHH
Confidence 111112223333322222100 0024689999999999976
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.90 E-value=3e-09 Score=112.63 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=78.7
Q ss_pred eEEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCC-------CCccccccccchhHHHHHHHHHHH
Q 005973 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS-------VGSFEVGMNTAKGLTREHAQLIRS 402 (666)
Q Consensus 330 iTid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~-------~g~~e~~~~~~~~qt~e~l~ll~~ 402 (666)
.|+-+....+...+..+.||||+|++.|...+..+++.++++|+|+|.+ +.. ....+ ......+..+..
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~---~~nr~-~es~~~~~~i~~ 228 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD---NENRM-EESKALFRTIIT 228 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCT---TSBHH-HHHHHHHHHHHT
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccc---cHhHH-HHHHHHHHHHhh
Confidence 3555556677778899999999999999999999999999999999775 211 11111 122222222211
Q ss_pred ----cCCCcEEEEEecccccccc----------------chhhhHHHHHHhhhhhhcC-cCCCCCcEEEeecccCCCccc
Q 005973 403 ----FGVDQLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCG-FKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 403 ----lgip~iIVViNK~Dlv~~~----------------~e~~~~i~~el~~~l~~~~-~~~~~i~iIpvSA~tG~nI~e 461 (666)
.++| +|+++||+|+.... ...+++..+-+...+.... -....+.+..+||+++.||..
T Consensus 229 ~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 229 YPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp SGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred hhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 2456 99999999986411 1112222222222222221 112346678899999999965
No 205
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.88 E-value=7.5e-09 Score=91.74 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=67.7
Q ss_pred CCCceeeEEeEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCC-ceEEEeeeeecCcccceeccCCceeEEeeccCcCccc
Q 005973 492 SKPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 570 (666)
Q Consensus 492 ~~p~~~~I~~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~ 570 (666)
..|..|.|..++..-.|.+ +.|+|++|+|++|+.| |.+ ...+|++|+++++++++|.+||+|++.|+|+.. +++
T Consensus 32 ~~P~k~~ilp~~~~vFgpv-ivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~ 106 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDV-IIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVK 106 (116)
T ss_dssp SCSEEEEEEEEEEETTEEE-EEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCC
T ss_pred cCcEEEEEEecCCeEECCe-eEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccC
Confidence 3466665555322213666 7889999999999999 888 799999999999999999999999999999877 899
Q ss_pred cccEEec
Q 005973 571 SGGVLCH 577 (666)
Q Consensus 571 ~G~VL~~ 577 (666)
+|++|..
T Consensus 107 ~GdVLyv 113 (116)
T 1xe1_A 107 KGDVLEI 113 (116)
T ss_dssp TTCEEEE
T ss_pred CCcEEEE
Confidence 9999964
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.86 E-value=3.9e-09 Score=112.20 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=59.7
Q ss_pred eEEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCC---cccc-ccccchhHHHHHHH-HHHH--
Q 005973 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEV-GMNTAKGLTREHAQ-LIRS-- 402 (666)
Q Consensus 330 iTid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g---~~e~-~~~~~~~qt~e~l~-ll~~-- 402 (666)
.|+-+....+...+..+.||||+|++.|...+..+++.++++|+|+|.+.- .++. ....+ ......+. ++..
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHHHHCGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchH-HHHHHHHHHHhhhhc
Confidence 355556667778889999999999999999999999999999999998720 0000 01111 12222222 2221
Q ss_pred -cCCCcEEEEEecccccc
Q 005973 403 -FGVDQLIVAVNKMDAVQ 419 (666)
Q Consensus 403 -lgip~iIVViNK~Dlv~ 419 (666)
.++| +|+++||+|+..
T Consensus 226 ~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp GTTSE-EEEEEECHHHHH
T ss_pred cCCCe-EEEEEECchhhh
Confidence 2456 999999999863
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=4.9e-09 Score=117.14 Aligned_cols=66 Identities=29% Similarity=0.540 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHh--cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcE-EEEEec
Q 005973 342 KNYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL-IVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~----f~~~~~~~--~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i-IVViNK 414 (666)
.++.++||||||... +...+... +..+|.+|||||+..+. .....+..+... +| + ++|+||
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~----------~~~~~a~~~~~~-~~-i~gvVlNK 249 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ----------ACEAQAKAFKDK-VD-VASVIVTK 249 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT----------THHHHHHHHHHH-HC-CCCEEEEC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc----------cHHHHHHHHHhh-cC-ceEEEEeC
Confidence 678899999999653 33333222 23799999999998762 112222222221 44 4 789999
Q ss_pred ccccc
Q 005973 415 MDAVQ 419 (666)
Q Consensus 415 ~Dlv~ 419 (666)
+|...
T Consensus 250 ~D~~~ 254 (504)
T 2j37_W 250 LDGHA 254 (504)
T ss_dssp TTSCC
T ss_pred Ccccc
Confidence 99873
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=3.4e-08 Score=107.85 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=77.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
..++|+|+|+.|+|||||++.|++.. +. |.. .....++.+.......+...+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l~--------------g~~-----------~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--FE--------------GEP-----------ATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC--C
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--cc--------------CCc-----------CCCCCccceEeeEEEEeecCcc
Confidence 34679999999999999999998541 10 000 000012333332222233222
Q ss_pred -eEEEEEeCCCccch-------------HHH----HHHhc---c-------cC--C-EEEEEEeCCCCccccccccchhH
Q 005973 344 -YHVVVLDSPGHKDF-------------VPN----MISGA---T-------QS--D-AAILVIDASVGSFEVGMNTAKGL 392 (666)
Q Consensus 344 -~~i~liDTPGh~~f-------------~~~----~~~~~---~-------~a--D-~aIlVVDa~~g~~e~~~~~~~~q 392 (666)
..++++|+||.... +.. .+... . .+ | +++||+|+.++ +...
T Consensus 94 ~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--------l~~~ 165 (427)
T 2qag_B 94 RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--------LKSL 165 (427)
T ss_dssp EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----------CHH
T ss_pred ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--------CCHH
Confidence 36899999996432 111 11111 1 12 2 46677788765 3345
Q ss_pred HHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeec
Q 005973 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (666)
Q Consensus 393 t~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA 453 (666)
..+.+..+. .+++ +|+|+||+|.+. ......+...+...+...| ++++.+|.
T Consensus 166 Dieilk~L~-~~~~-vI~Vi~KtD~Lt--~~E~~~l~~~I~~~L~~~g-----i~I~~is~ 217 (427)
T 2qag_B 166 DLVTMKKLD-SKVN-IIPIIAKADAIS--KSELTKFKIKITSELVSNG-----VQIYQFPT 217 (427)
T ss_dssp HHHHHHHTC-SCSE-EEEEESCGGGSC--HHHHHHHHHHHHHHHBTTB-----CCCCCCC-
T ss_pred HHHHHHHHh-hCCC-EEEEEcchhccc--hHHHHHHHHHHHHHHHHcC-----CcEEecCC
Confidence 555555544 4566 999999999884 3445555555655444433 45566664
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.72 E-value=3.2e-09 Score=114.52 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=86.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.+|+++|.+|+|||||+|+|++..... .........+|+|.+.....+.. .+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~-------------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGK-------------------------GNVITTSYFPGTTLDMIEIPLES---GA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHT-------------------------TCCCEEEECTTSSCEEEEEECST---TC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCC-------------------------ccceeecCCCCeEEeeEEEEeCC---Ce
Confidence 469999999999999999999641100 01112234467787766554432 38
Q ss_pred EEEeCCCccch-------HHHHHHhc---ccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 347 VVLDSPGHKDF-------VPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 347 ~liDTPGh~~f-------~~~~~~~~---~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.|+||||.... ....+..+ ...+.+++++++....+..++.. +.++...++| +++++||+|
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCce-EEEEecCCc
Confidence 99999995321 11222233 66899999999865433322221 2223345666 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI 459 (666)
.+.. ...+...+.+.+.+ + ..+.|.++....++
T Consensus 286 ~~~~--~~~~~~~~~~~~~~---g-----~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 286 TVHR--TKLEKADSLYANQL---G-----ELLSPPSKRYAAEF 318 (369)
T ss_dssp CEEE--EEGGGHHHHHHHHB---T-----TTBCSSCGGGTTTC
T ss_pred cccc--ccHHHHHHHHHHhc---C-----CccCCCCchhhhhc
Confidence 8853 23333333333332 2 13455666655555
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.66 E-value=6e-09 Score=112.27 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=83.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCeEE
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~~i 346 (666)
.+|+++|.+|+|||||+|+|++...... .+.......+|+|.+.....+.. .+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~------------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET------------------------ENVITTSHFPGTTLDLIDIPLDE---ES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC------------------------SSCCEEECCC----CEEEEESSS---SC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc------------------------ccceecCCCCCeecceEEEEecC---Ce
Confidence 4699999999999999999996531100 01112234467787766554432 38
Q ss_pred EEEeCCCccch-------HHHHHHh---cccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccc
Q 005973 347 VVLDSPGHKDF-------VPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (666)
Q Consensus 347 ~liDTPGh~~f-------~~~~~~~---~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~D 416 (666)
.|+||||..+. ....+.. ....+.+++++++....+..++.. +.++...++| +++++||+|
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE--------EEEecCCCce-EEEEecCcc
Confidence 99999995331 1222222 356889999999865443332221 2223344666 999999999
Q ss_pred cccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCc
Q 005973 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (666)
Q Consensus 417 lv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI 459 (666)
.+.. ...+...+.+.+. ++. .++|.++..+.++
T Consensus 285 ~~~~--~~~~~~~~~~~~~---~g~-----~l~p~~~~~~~~~ 317 (368)
T 3h2y_A 285 TIHR--TKLEKADELYKNH---AGD-----LLSPPTPEELENM 317 (368)
T ss_dssp CEEE--EEHHHHHHHHHHH---BTT-----TBCSSCHHHHHTS
T ss_pred cccc--ccHHHHHHHHHHH---hCC-----ccCCCchhhHhhc
Confidence 9853 3333333333333 231 3455566555555
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=3.6e-07 Score=94.21 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec--CC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~--~~ 343 (666)
.++|+|+|+.|+|||||++.|++...... ..+ ...|. +.......+++.. .++. -.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~-G~i-------~~~g~---------~i~~~~~~~~i~~-----v~q~~~~~ 59 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRK-ASS-------WNREE---------KIPKTVEIKAIGH-----VIEEGGVK 59 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-----------------------------CCCCCSCCEEEE-----SCC----C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCC-Ccc-------ccCCc---------ccCcceeeeeeEE-----EeecCCCc
Confidence 37899999999999999999996532110 000 00000 0000001111111 1111 12
Q ss_pred eEEEEEeCCCccc-------------hH-----HHHHH----------hcccCCEEEEEEeCC-CCccccccccchhHHH
Q 005973 344 YHVVVLDSPGHKD-------------FV-----PNMIS----------GATQSDAAILVIDAS-VGSFEVGMNTAKGLTR 394 (666)
Q Consensus 344 ~~i~liDTPGh~~-------------f~-----~~~~~----------~~~~aD~aIlVVDa~-~g~~e~~~~~~~~qt~ 394 (666)
..++++|+||... +. ..... .+..+.++++++|.. ++ +.+...
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--------L~~lD~ 131 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--------LRPLDL 131 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--------CCHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--------CCHHHH
Confidence 3689999999422 11 11111 122368899999965 44 456677
Q ss_pred HHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCc
Q 005973 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (666)
Q Consensus 395 e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~ 441 (666)
+.+..+... ++ +|+|+||+|... .......++.+...+...++
T Consensus 132 ~~l~~L~~~-~~-vI~Vi~K~D~lt--~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 132 EFMKHLSKV-VN-IIPVIAKADTMT--LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHHHHHTT-SE-EEEEETTGGGSC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-Cc-EEEEEeccccCC--HHHHHHHHHHHHHHHHHcCc
Confidence 777777766 66 999999999984 44555566666666655543
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.56 E-value=4.6e-08 Score=105.94 Aligned_cols=84 Identities=21% Similarity=0.126 Sum_probs=50.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecC--
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~-- 342 (666)
..++|+|+|.+|+|||||+|+|++.... ....+++|++.....+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-------------------------------~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS-------------------------------AENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCccccCceeEEEEECCc
Confidence 4578999999999999999999953211 0112344444333333322
Q ss_pred ---------------CeEEEEEeCCCccchHH-------HHHHhcccCCEEEEEEeCCC
Q 005973 343 ---------------NYHVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASV 379 (666)
Q Consensus 343 ---------------~~~i~liDTPGh~~f~~-------~~~~~~~~aD~aIlVVDa~~ 379 (666)
...+.||||||+.++.. ..+..++.+|++|+|||+..
T Consensus 70 r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 70 RFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999876543 45677889999999999975
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.55 E-value=7e-07 Score=97.37 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=86.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh----hCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEec
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL----LGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~----~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~ 341 (666)
...|+|+|++|||||||+|.|++. .|.+... .....+ .+. .+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~------------------------g~~~t~-~~~-------v~q~ 116 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG------------------------VVEVTM-ERH-------PYKH 116 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCC------------------------C----C-CCE-------EEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEEC------------------------Ceecce-eEE-------eccc
Confidence 457999999999999999999963 1222110 000000 111 1122
Q ss_pred C-CeEEEEEeCCCccc---hHHHHHH--hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 K-NYHVVVLDSPGHKD---FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~-~~~i~liDTPGh~~---f~~~~~~--~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
. ...++++|+||... -....+. ++...+..++ ++...+ +.|....+..+...+.| +++|+||.
T Consensus 117 ~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~---------~kqrv~la~aL~~~~~p-~~lV~tkp 185 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF---------KKNDIDIAKAISMMKKE-FYFVRTKV 185 (413)
T ss_dssp SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC---------CHHHHHHHHHHHHTTCE-EEEEECCH
T ss_pred cccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc---------cHHHHHHHHHHHhcCCC-eEEEEecC
Confidence 2 23689999999532 1233333 2344565555 777542 35666677777778887 99999999
Q ss_pred cccc-------ccchhhhHHHHHHhhhh----hhcCcCCCCCcEEEeec--ccCCCccc
Q 005973 416 DAVQ-------YSKDRFDSIKVQLGTFL----RSCGFKDASLTWIPLSA--LENQNLVT 461 (666)
Q Consensus 416 Dlv~-------~~~e~~~~i~~el~~~l----~~~~~~~~~i~iIpvSA--~tG~nI~e 461 (666)
|+.- -+....+.+.+.+..+. ...+.. ...+|++|+ +.+.|+.+
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~--~~~iiliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA--EPPIFLLSNKNVCHYDFPV 242 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS--SCCEEECCTTCTTSTTHHH
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCcEEEEecCcCCccCHHH
Confidence 9762 11222233444444443 222221 235799999 66667754
No 214
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.42 E-value=8.9e-08 Score=65.32 Aligned_cols=26 Identities=35% Similarity=1.072 Sum_probs=24.7
Q ss_pred cceeecccccCCCCCcccccccCCCC
Q 005973 49 RVWSCAICTYDNEEGMSVCDICGVLR 74 (666)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~~ 74 (666)
..|.|+.|||.|+..+..|||||.+|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999988
No 215
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.39 E-value=3.8e-07 Score=95.38 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=67.9
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchh
Q 005973 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (666)
Q Consensus 345 ~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~ 424 (666)
.+.|||| +++|......+++.+|++|+|+|++.+.+. + ......+..++..++| +|+|+||+|+.+. ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s--~----~~l~~~l~~~~~~~~p-iilv~NK~DL~~~--~~ 132 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETS--T----YIIDKFLVLAEKNELE-TVMVINKMDLYDE--DD 132 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCC--H----HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCC--H----HHHHHHHHHHHHCCCC-EEEEEeHHHcCCc--hh
Confidence 7899999 888877777889999999999999876311 1 1222333344556787 8999999999742 11
Q ss_pred hhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 425 ~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
. +++..+++.++- . .+++++||++|.|+.+
T Consensus 133 v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 133 L----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp H----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHH
T ss_pred H----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHH
Confidence 1 222333332221 1 4789999999999976
No 216
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=72.38 Aligned_cols=33 Identities=24% Similarity=0.734 Sum_probs=29.1
Q ss_pred cCCCCcceeecccccCCCCCcccccccCCCCCc
Q 005973 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (666)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~~~~ 76 (666)
....++.|.|+.|||.|......|+||+++|..
T Consensus 5 ~~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGT 37 (53)
T ss_dssp CSSCCCCEECSSSCCEECSSCSSCSSSCCCCCC
T ss_pred CCCCCCCcCCCCCccCCCCCCCccCCCCCcCCc
Confidence 344567899999999999999999999999965
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=5.9e-07 Score=97.30 Aligned_cols=85 Identities=21% Similarity=0.139 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCC-
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~- 343 (666)
...+|+|+|++|||||||+|+|++...... ...+++|++.....+...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~------------------------------~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNP------------------------------ANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTST------------------------------TCCSSCCCCTTEEEEEECCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------cCCCceeecceeeeeeeCCc
Confidence 357899999999999999999996432111 1123444443333333222
Q ss_pred ----------------eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEeCCC
Q 005973 344 ----------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (666)
Q Consensus 344 ----------------~~i~liDTPGh~~-------f~~~~~~~~~~aD~aIlVVDa~~ 379 (666)
..+.|+|+||... +....+..++.+|.+++|+|+..
T Consensus 69 r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 69 RFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred chhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999533 44566777889999999999865
No 218
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.34 E-value=1.7e-07 Score=65.34 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=25.8
Q ss_pred CcceeecccccCCCCCcccccccCCCCC
Q 005973 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
...|.|+.|||.|+.....||||++.|.
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3469999999999999999999999985
No 219
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.30 E-value=4.9e-07 Score=68.81 Aligned_cols=34 Identities=26% Similarity=0.594 Sum_probs=29.0
Q ss_pred CCcceeecccccCCCCCcccccccCCCCCccccC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPLVNN 80 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~~~~~~ 80 (666)
....|.|+.|||.|+.....||||+..|...+..
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~~~ 40 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQV 40 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCCCTTSCC
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcCCccccC
Confidence 3447999999999999999999999999765433
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.25 E-value=3.3e-06 Score=92.57 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecc
Q 005973 342 KNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (666)
Q Consensus 342 ~~~~i~liDTPGh~~----f~~~~--~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~ 415 (666)
.++.++||||||... ....+ +..+..+|.++||+||..+. .....+..... .++...||+||+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq----------~a~~~a~~f~~-~~~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ----------QAYNQALAFKE-ATPIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GHHHHHHHHHH-SCTTEEEEEECC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch----------hHHHHHHHHHh-hCCCeEEEEECC
Confidence 457899999999432 22222 12344589999999998651 22222222222 233257899999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
|.... ...+ ..+....+ +|+.+++. |++++++
T Consensus 250 D~~~~----gG~~----ls~~~~~g-----~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 250 DGSAK----GGGA----LSAVAATG-----APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSCSS----HHHH----HHHHHTTC-----CCEEEEEC--SSSTTCE
T ss_pred CCccc----ccHH----HHHHHHHC-----CCEEEEEc--CCChHHh
Confidence 98632 1111 12222223 46677764 9998663
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.23 E-value=8.3e-07 Score=96.35 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=58.1
Q ss_pred EEEEEEEEEecCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCC---cccc-ccccchhHHHHHHHHHHH----
Q 005973 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEV-GMNTAKGLTREHAQLIRS---- 402 (666)
Q Consensus 331 Tid~~~~~~~~~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g---~~e~-~~~~~~~qt~e~l~ll~~---- 402 (666)
|+-+....|...+..+.||||+|++.|...+..++..++++|+|+|.+.- .+|. ....+ ......+..+..
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWNNRWL 282 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHTCTTC
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHhcccC
Confidence 44444456677789999999999999999999999999999999999860 0000 01111 122222222222
Q ss_pred cCCCcEEEEEeccccc
Q 005973 403 FGVDQLIVAVNKMDAV 418 (666)
Q Consensus 403 lgip~iIVViNK~Dlv 418 (666)
.++| +|+|+||+|+.
T Consensus 283 ~~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTIS-VILFLNKQDLL 297 (402)
T ss_dssp SSCC-EEEEEECHHHH
T ss_pred CCCe-EEEEEEChhhh
Confidence 2455 99999999985
No 222
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=98.20 E-value=6.3e-07 Score=70.83 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=28.2
Q ss_pred cceeecccccCCCCCcccccccCCCCCccccC
Q 005973 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLVNN 80 (666)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~~~~~~~~ 80 (666)
..|.|+.|||.|+.....|||||..|...+..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~~~ 38 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETYQI 38 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSCCC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccccC
Confidence 36999999999999999999999999766443
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.18 E-value=1.8e-06 Score=94.74 Aligned_cols=66 Identities=27% Similarity=0.408 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCccch----HHHHH--HhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCC-CcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDF----VPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f----~~~~~--~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi-p~iIVViNK 414 (666)
.++.++||||||.... ...+. ..+..+|.++||+|+..+. .....+.... .++ +...+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~----------~~~~~~~~~~-~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ----------QAGIQAKAFK-EAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG----------GHHHHHHHHH-TTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH----------HHHHHHHHHh-hcccCCeEEEEeC
Confidence 5678999999996543 22221 1223689999999997651 1222222222 134 436889999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
+|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9985
No 224
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.16 E-value=9.2e-07 Score=94.63 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCC---Ccccc-ccccchhHHHHHHHHHHH----cCCCcEEEEEe
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV---GSFEV-GMNTAKGLTREHAQLIRS----FGVDQLIVAVN 413 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~---g~~e~-~~~~~~~qt~e~l~ll~~----lgip~iIVViN 413 (666)
....+.||||+|+++|...+..+++.++++|+|+|.+. -.++. ....+ ......+..+.. .++| +|+|+|
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~-~~~~~~~~~i~~~~~~~~~p-iiLvgN 258 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEKTS-FMLFLN 258 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH-HHHHHHHHHHHTCGGGSSCE-EEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH-HHHHHHHHHHHhccccCCCe-EEEEEE
Confidence 35789999999999999999999999999999999861 00000 01111 122222222221 2455 999999
Q ss_pred ccccc
Q 005973 414 KMDAV 418 (666)
Q Consensus 414 K~Dlv 418 (666)
|+|+.
T Consensus 259 K~DL~ 263 (354)
T 2xtz_A 259 KFDIF 263 (354)
T ss_dssp CHHHH
T ss_pred Ccchh
Confidence 99985
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.05 E-value=1.9e-05 Score=86.53 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=53.4
Q ss_pred CCeEEEEEeCCCccc------hHHHHHH--hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH-HcCCCcEEEEE
Q 005973 342 KNYHVVVLDSPGHKD------FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAV 412 (666)
Q Consensus 342 ~~~~i~liDTPGh~~------f~~~~~~--~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~-~lgip~iIVVi 412 (666)
.++.++|+||||... +...+.. .+..+|.++||+|+..+. .....+.... .+++ ..||+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq----------~a~~~a~~f~~~~~~--~gVIl 245 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ----------KAYDLASRFHQASPI--GSVII 245 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GGHHHHHHHHHHCSS--EEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch----------HHHHHHHHHhcccCC--cEEEE
Confidence 467899999999543 3333322 233579999999998651 1122222232 3333 57899
Q ss_pred eccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 413 NK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
||+|... +...+.. +....+ +|+.+++. |+++.+
T Consensus 246 TKlD~~a----~~G~als----~~~~~g-----~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 246 TKMDGTA----KGGGALS----AVVATG-----ATIKFIGT--GEKIDE 279 (433)
T ss_dssp ECGGGCS----CHHHHHH----HHHHHT-----CEEEEEEC--CSSSSC
T ss_pred ecccccc----cchHHHH----HHHHHC-----CCEEEEEC--CCChHh
Confidence 9999763 2111111 111223 46777774 888854
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.04 E-value=8.5e-06 Score=84.40 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred EEeCCCcc-chHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhh
Q 005973 348 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (666)
Q Consensus 348 liDTPGh~-~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~ 426 (666)
|-+-|||. +..+.+...+..+|++|+|+||..+.... ..... .++ .+.| +|+|+||+|+++ .+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~-----~~~l~---~~l--~~kp-~ilVlNK~DL~~--~~~~- 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSR-----NPMIE---DIL--KNKP-RIMLLNKADKAD--AAVT- 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTS-----CHHHH---HHC--SSSC-EEEEEECGGGSC--HHHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccC-----CHHHH---HHH--CCCC-EEEEEECcccCC--HHHH-
Confidence 44679987 57788899999999999999999863211 01111 111 2445 899999999984 2222
Q ss_pred HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 427 ~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+..+++..+ ++++++||++|.|+.+
T Consensus 69 ---~~~~~~~~~~g-----~~~i~iSA~~~~gi~~ 95 (282)
T 1puj_A 69 ---QQWKEHFENQG-----IRSLSINSVNGQGLNQ 95 (282)
T ss_dssp ---HHHHHHHHTTT-----CCEEECCTTTCTTGGG
T ss_pred ---HHHHHHHHhcC-----CcEEEEECCCcccHHH
Confidence 23333443333 3679999999999965
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.02 E-value=6.9e-06 Score=85.89 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred ccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHh
Q 005973 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (666)
Q Consensus 354 h~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~ 433 (666)
++++......+++.+|++|+|+|++++.+. . ......+..+...++| +|+|+||+|+.+. ..++ ..+++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s-----~-~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~--~~v~-~~~~~~ 135 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN-----N-YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE--EEKK-ELERWI 135 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC-----H-HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHHH-HHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC-----H-HHHHHHHHHHHhCCCC-EEEEEEcccCCCc--cccH-HHHHHH
Confidence 344433333578999999999999876321 1 1233445556667888 8999999999742 1111 123334
Q ss_pred hhhhhcCcCCCCCcEEEeecccCCCcccC
Q 005973 434 TFLRSCGFKDASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 434 ~~l~~~~~~~~~i~iIpvSA~tG~nI~e~ 462 (666)
.+.+.++ ++++++||++|.|+.++
T Consensus 136 ~~~~~~g-----~~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 136 SIYRDAG-----YDVLKVSAKTGEGIDEL 159 (302)
T ss_dssp HHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred HHHHHCC-----CeEEEEECCCCCCHHHH
Confidence 4444444 36899999999999773
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.95 E-value=6.1e-05 Score=78.55 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCeEEEEEeCCCccc--hHHHHH------HhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEe
Q 005973 342 KNYHVVVLDSPGHKD--FVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (666)
Q Consensus 342 ~~~~i~liDTPGh~~--f~~~~~------~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViN 413 (666)
.++.++||||||... ....+. ..+..+|.+++|+|+..+ ......+..+.. .++-..+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g----------~~~~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG----------QKAYDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GGHHHHHHHHHH-TCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch----------HHHHHHHHHHHh-hCCCCEEEEe
Confidence 567899999999665 322222 245579999999999743 122233333332 3453578999
Q ss_pred ccccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 414 K~Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|+|... +...+ ..+...++ +|+..++ +|+++.+
T Consensus 248 k~D~~~----~~g~~----~~~~~~~~-----~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 248 KMDGTA----KGGGA----LSAVAATG-----ATIKFIG--TGEKIDE 280 (297)
T ss_dssp CGGGCT----THHHH----HHHHHTTT-----CCEEEEE--CSSSTTC
T ss_pred CCCCCc----chHHH----HHHHHHHC-----cCEEEEe--CCCChhh
Confidence 999752 11111 12232333 4556655 7888855
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.94 E-value=5.6e-06 Score=85.79 Aligned_cols=58 Identities=28% Similarity=0.271 Sum_probs=35.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhhhHHHHhhhCCCcchhhhcccccccccccCeEEEEEEEEEecCCe
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i~~~~~~k~~k~~~~~g~g~~~~~~~~d~~~~e~~~GiTid~~~~~~~~~~~ 344 (666)
..++|+++|.+|+|||||+|+|++..... ....+|+|.+.....+ +.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 165 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK------------------------------TGDRPGITTSQQWVKV---GK 165 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------------------------------------CCEEE---TT
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee------------------------------cCCCCCeeeeeEEEEe---CC
Confidence 56899999999999999999999542211 1123466665543332 34
Q ss_pred EEEEEeCCCcc
Q 005973 345 HVVVLDSPGHK 355 (666)
Q Consensus 345 ~i~liDTPGh~ 355 (666)
.+.|+||||..
T Consensus 166 ~~~l~DtpG~~ 176 (282)
T 1puj_A 166 ELELLDTPGIL 176 (282)
T ss_dssp TEEEEECCCCC
T ss_pred CEEEEECcCcC
Confidence 68999999953
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.87 E-value=3.8e-06 Score=95.36 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.+.++|+|+|.+|+|||||+|+|++.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 35688999999999999999999954
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.72 E-value=3.4e-05 Score=82.96 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=61.1
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhH
Q 005973 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (666)
Q Consensus 348 liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~ 427 (666)
-+++| +++|...+......++++|+|+|+.+... . +.....+. + .+.| +|+|+||+|+.+.. ...+.
T Consensus 53 ~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s---~~~~l~~~---l--~~~p-iilV~NK~DLl~~~-~~~~~ 119 (369)
T 3ec1_A 53 DVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--S---FIPGLPRF---A--ADNP-ILLVGNKADLLPRS-VKYPK 119 (369)
T ss_dssp -------CHHHHHHHHHHHHCCEEEEEEETTCSGG--G---CCSSHHHH---C--TTSC-EEEEEECGGGSCTT-CCHHH
T ss_pred CCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--c---hhhHHHHH---h--CCCC-EEEEEEChhcCCCc-cCHHH
Confidence 34443 67788777777788999999999987531 1 11122221 1 1455 89999999998532 11233
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+.+..+++..++.. ..++++||++|+|+.+
T Consensus 120 ~~~~l~~~~~~~g~~~--~~v~~iSA~~g~gi~~ 151 (369)
T 3ec1_A 120 LLRWMRRMAEELGLCP--VDVCLVSAAKGIGMAK 151 (369)
T ss_dssp HHHHHHHHHHTTTCCC--SEEEECBTTTTBTHHH
T ss_pred HHHHHHHHHHHcCCCc--ccEEEEECCCCCCHHH
Confidence 4444555566666532 3679999999999966
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.71 E-value=4.3e-05 Score=82.06 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=60.0
Q ss_pred CccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHH
Q 005973 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (666)
Q Consensus 353 Gh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el 432 (666)
..++|...+....+.+|++|+|+|+.+.. .. +.....+. + .+.| +|+|+||+|+.+.. ...+.+.+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~---~~~~l~~~---~--~~~p-~ilV~NK~DL~~~~-~~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GS---WLPGLHRF---V--GNNK-VLLVGNKADLIPKS-VKHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HH---CCTTHHHH---S--SSSC-EEEEEECGGGSCTT-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--cc---HHHHHHHH---h--CCCc-EEEEEEChhcCCcc-cCHHHHHHHH
Confidence 34677777777777888999999998631 00 11111111 1 1455 89999999997532 1223344444
Q ss_pred hhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 433 GTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 433 ~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
..+++..++. ..+++.+||++|+|+.+
T Consensus 123 ~~~~~~~g~~--~~~v~~iSA~~g~gi~~ 149 (368)
T 3h2y_A 123 RYSAKQLGLK--PEDVFLISAAKGQGIAE 149 (368)
T ss_dssp HHHHHHTTCC--CSEEEECCTTTCTTHHH
T ss_pred HHHHHHcCCC--cccEEEEeCCCCcCHHH
Confidence 5555566652 23689999999999976
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.71 E-value=4.3e-05 Score=80.84 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=52.9
Q ss_pred CeEEEEEeCCCccc----hHHHHH--HhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEecc
Q 005973 343 NYHVVVLDSPGHKD----FVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKM 415 (666)
Q Consensus 343 ~~~i~liDTPGh~~----f~~~~~--~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVViNK~ 415 (666)
++.+.++||+|... +...+. ..+..+|-.++|+|+..+ .+..+.+..+ ..+++. ++++||+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~----------~~~~~~~~~~~~~~~it--~iilTKl 278 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG----------NAIVEQARQFNEAVKID--GIILTKL 278 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----------THHHHHHHHHHHHSCCC--EEEEECG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----------HHHHHHHHHHHHhcCCC--EEEEeCc
Confidence 45577899999532 222221 122348999999998765 2333333333 345665 7789999
Q ss_pred ccccccchhhhHHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 416 Dlv~~~~e~~~~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
|... +.-.+. .++...+ .|+..++ +|+++.+
T Consensus 279 D~~a----~~G~~l----~~~~~~~-----~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 279 DADA----RGGAAL----SISYVID-----APILFVG--VGQGYDD 309 (328)
T ss_dssp GGCS----CCHHHH----HHHHHHT-----CCEEEEE--CSSSTTC
T ss_pred CCcc----chhHHH----HHHHHHC-----CCEEEEe--CCCCccc
Confidence 9642 111121 2222233 4667776 8888855
No 234
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.63 E-value=6.7e-05 Score=64.68 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=69.2
Q ss_pred eeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccceeccCCceeEEeeccCcCccccc
Q 005973 497 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSG 572 (666)
Q Consensus 497 ~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~~i~~G 572 (666)
..|.++|+++ .|.+ +..+|..|.|+.+..+++...+. ..++.||.++..++.++.+|.-++|.|.+. .+++.|
T Consensus 9 AeVr~vF~isk~g~I-AGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~G 85 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTI-AGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEG 85 (99)
T ss_dssp EEECCCCCCSSSCCC-EEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSC
T ss_pred EEEEEEEEcCCceEE-EEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCC
Confidence 4567888888 8998 89999999999999999999986 468999999999999999999999999876 489999
Q ss_pred cEEec
Q 005973 573 GVLCH 577 (666)
Q Consensus 573 ~VL~~ 577 (666)
|+|=.
T Consensus 86 D~Ie~ 90 (99)
T 1d1n_A 86 DVIEA 90 (99)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99854
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.63 E-value=5e-05 Score=83.34 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCccchHHHHH------HhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHH-HHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~------~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVViNK 414 (666)
.++.++||||||...+...+. ..+..++.+++|+|+..+. .....+... ..+++. -||+||
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~----------~~~~~~~~f~~~l~i~--gvVlnK 249 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ----------DAANTAKAFNEALPLT--GVVLTK 249 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT----------THHHHHHHHHHHSCCC--CEEEEC
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH----------HHHHHHHHHhccCCCe--EEEEec
Confidence 567899999999654322222 2245689999999997651 111222222 234433 468999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
+|..
T Consensus 250 ~D~~ 253 (433)
T 2xxa_A 250 VDGD 253 (433)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9975
No 236
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.51 E-value=3.9e-05 Score=78.49 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCccc-hHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHH
Q 005973 351 SPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (666)
Q Consensus 351 TPGh~~-f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~ 429 (666)
-|||.. ..+.+...+..+|++|+|+||..+..... ... + ++ +.| .|+|+||+|+++ .+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~-----~~l-~---ll---~k~-~iivlNK~DL~~--~~~~---- 64 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA-----YGV-D---FS---RKE-TIILLNKVDIAD--EKTT---- 64 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC-----TTS-C---CT---TSE-EEEEEECGGGSC--HHHH----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC-----hHH-H---hc---CCC-cEEEEECccCCC--HHHH----
Confidence 389865 45788889999999999999998743211 111 1 11 666 899999999985 2222
Q ss_pred HHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 430 ~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+..+++..++ ++ ++||++|.|+.+
T Consensus 65 ~~~~~~~~~~g~-----~v-~iSa~~~~gi~~ 90 (262)
T 3cnl_A 65 KKWVEFFKKQGK-----RV-ITTHKGEPRKVL 90 (262)
T ss_dssp HHHHHHHHHTTC-----CE-EECCTTSCHHHH
T ss_pred HHHHHHHHHcCC-----eE-EEECCCCcCHHH
Confidence 223334444343 56 999999999865
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.51 E-value=3.1e-05 Score=79.28 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
++|+++|.+|+|||||+|+|++.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 68999999999999999999953
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.51 E-value=0.00022 Score=74.62 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=57.7
Q ss_pred hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCC
Q 005973 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (666)
Q Consensus 364 ~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~ 443 (666)
.+..+|.+++|+|+..+.+.. ......+..+...+++ .|+|+||+|+.+. ....+..+++.++.+..++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~------~~i~r~L~~~~~~~~~-~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~g~-- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFST------ALLDRFLVLVEANDIQ-PIICITKMDLIED--QDTEDTIQAYAEDYRNIGY-- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCH------HHHHHHHHHHHTTTCE-EEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCCEEEEEEeCCCCCCCH------HHHHHHHHHHHHCCCC-EEEEEECCccCch--hhhHHHHHHHHHHHHhCCC--
Confidence 578899999999999775431 2344455555667888 7999999999853 1110112334444444554
Q ss_pred CCCcEEEeecccCCCcccC
Q 005973 444 ASLTWIPLSALENQNLVTA 462 (666)
Q Consensus 444 ~~i~iIpvSA~tG~nI~e~ 462 (666)
+++++||.+|.|+.++
T Consensus 152 ---~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 152 ---DVYLTSSKDQDSLADI 167 (307)
T ss_dssp ---CEEECCHHHHTTCTTT
T ss_pred ---eEEEEecCCCCCHHHH
Confidence 6799999999998763
No 239
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.50 E-value=0.00026 Score=63.14 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=69.5
Q ss_pred eeeEEeEeecC-CCe---EEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccceeccCCceeEEeeccCcC-
Q 005973 496 LMPICDVLKSQ-HGQ---VSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVS- 567 (666)
Q Consensus 496 ~~~I~~v~~~~-~G~---v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gid~~- 567 (666)
...|.++|+++ .|. + +..+|..|.|+.+..+++...+. ..++.||.++...+.++.+|.-++|.|.+. .
T Consensus 12 ~AeVr~vF~isk~g~~~~I-AGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~f--ni 88 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPV-ADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEE--KV 88 (120)
T ss_dssp EEEEEEEEEEEETTEEEEE-EEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCT--TS
T ss_pred EEEEeEEEEeCCCCceeEE-eEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccC--CC
Confidence 35677888888 787 7 89999999999999999999986 468999999999999999999999998865 5
Q ss_pred ccccccEEecC
Q 005973 568 RVMSGGVLCHP 578 (666)
Q Consensus 568 ~i~~G~VL~~~ 578 (666)
+++.||+|=..
T Consensus 89 Dik~GDiIE~y 99 (120)
T 2crv_A 89 EFKPGDQVICY 99 (120)
T ss_dssp CCCTTEEEEEE
T ss_pred CCCCCCEEEEE
Confidence 78899998543
No 240
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.45 E-value=4.4e-05 Score=52.37 Aligned_cols=29 Identities=21% Similarity=0.609 Sum_probs=25.6
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
..|.|.|+.||+.|..+...|.+|.++|.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 45789999999999999999999999984
No 241
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.44 E-value=9e-05 Score=82.13 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..-.|+|+|..|+|||||++.|.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3457999999999999999999864
No 242
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.43 E-value=0.00027 Score=80.90 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.+.|+|+|+.|||||||++.|++.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCeEEEECCCCChHHHHHHHHhCC
Confidence 345999999999999999999964
No 243
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.29 E-value=0.00038 Score=68.62 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=55.4
Q ss_pred CccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHH----cCCCcEEEEEecc-ccccccchhhhH
Q 005973 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKM-DAVQYSKDRFDS 427 (666)
Q Consensus 353 Gh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVViNK~-Dlv~~~~e~~~~ 427 (666)
|+..+.+.+..++..+|++|+|||+++... +. ......+...++.. .++| ++|..||. |+... -...+
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R---~e-ak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~A--ms~~E 183 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKR--MPCFY 183 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC---CC-HHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCB--CCHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH---HH-HHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCC--CCHHH
Confidence 788888888899999999999999986521 11 01111111222221 3677 88888995 67532 12233
Q ss_pred HHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 428 i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
+.+.+.- .. +. ..+.+.++||++|+|+.+
T Consensus 184 I~e~L~L--~~--l~-R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 184 LAHELHL--NL--LN-HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp HHHHTTG--GG--GC-SCEEEEEEETTTCTTHHH
T ss_pred HHHHcCC--cC--CC-CCEEEEEeECCCCcCHHH
Confidence 4443331 12 22 457889999999999966
No 244
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.10 E-value=0.0026 Score=61.23 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC-----CCcEEEEEeccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMD 416 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg-----ip~iIVViNK~D 416 (666)
..+.++|+|||+.. .......+..+|.+|+++..... - ......+..+..++ ++ +.+|+|++|
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--------~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~ 141 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--------D-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKI 141 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--------T-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBC
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--------H-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccC
Confidence 35789999999865 33445566779999999988754 1 24455566666554 44 689999999
Q ss_pred cc
Q 005973 417 AV 418 (666)
Q Consensus 417 lv 418 (666)
..
T Consensus 142 ~~ 143 (206)
T 4dzz_A 142 EM 143 (206)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.10 E-value=0.00036 Score=72.93 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.-.|+|+|+.|+|||||++.|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 447999999999999999999864
No 246
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.07 E-value=0.0018 Score=67.71 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.-.|+|+|.+|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 456999999999999999999864
No 247
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.00 E-value=0.0016 Score=72.47 Aligned_cols=100 Identities=21% Similarity=0.283 Sum_probs=78.7
Q ss_pred cHHHHh----hhcCCCCCCCCCCceeeEEeEeecC-CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcc
Q 005973 476 CLLDAI----DSLRPPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQS 547 (666)
Q Consensus 476 ~LL~~L----~~l~~~~~~~~~p~~~~I~~v~~~~-~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~ 547 (666)
.|++.+ ..+..|.....---...|.++|+.+ .|.+ +..+|..|.|++|..+.+...+. ..+|.||+++..+
T Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~i-aG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~ 464 (501)
T 1zo1_I 386 NLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAI-AGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDD 464 (501)
T ss_dssp HHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCE-EEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEE
T ss_pred HHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEE-EEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCcc
Confidence 466654 3334443333333345567889887 7988 89999999999999999988874 6799999999999
Q ss_pred cceeccCCceeEEeeccCcCccccccEEecC
Q 005973 548 CSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 578 (666)
Q Consensus 548 v~~A~aGd~V~l~L~gid~~~i~~G~VL~~~ 578 (666)
+.++..|+-|+|.|.+. .+++.||+|-..
T Consensus 465 v~e~~~g~ecgi~~~~~--~~~~~gd~~~~~ 493 (501)
T 1zo1_I 465 VNEVRNGMECGIGVKNY--NDVRTGDVIEVF 493 (501)
T ss_dssp ESEEETTCCEEEEBCCC--TTCCTTCEEEEC
T ss_pred ccEECCCCEEEEEEcCc--CCCCCCCEEEEE
Confidence 99999999999999876 488999998653
No 248
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.00037 Score=51.62 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=29.8
Q ss_pred cCCCCcceeecccccCCCCCcccccccCCCCCcc
Q 005973 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (666)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~~~~~ 77 (666)
-....|.|.|..|.+.|......|-+|++++..-
T Consensus 5 ~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs 38 (47)
T 2ebq_A 5 SSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT 38 (47)
T ss_dssp CCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred cCCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence 3347889999999999999999999999998653
No 249
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.0009 Score=69.06 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=60.8
Q ss_pred CCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHH---H-cCCCcEEEEEec-cccccccchhhh
Q 005973 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---S-FGVDQLIVAVNK-MDAVQYSKDRFD 426 (666)
Q Consensus 352 PGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~---~-lgip~iIVViNK-~Dlv~~~~e~~~ 426 (666)
.|+..+.+.+..++..+|++|+|||+++... +. ......+...++. . .++| ++|..|| .|+...- ...
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---le-ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am--s~~ 267 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM--PCF 267 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CC-HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC--CHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HH-HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC--CHH
Confidence 4688888999999999999999999987532 11 1111111112331 1 4788 8888897 5776421 223
Q ss_pred HHHHHHhhhhhhcCcCCCCCcEEEeecccCCCccc
Q 005973 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (666)
Q Consensus 427 ~i~~el~~~l~~~~~~~~~i~iIpvSA~tG~nI~e 461 (666)
++.+.+.- .. +. ....+.++||++|+|+.+
T Consensus 268 EI~e~L~L--~~--l~-r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 268 YLAHELHL--NL--LN-HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp HHHHHTTG--GG--GC-SCEEEEEEETTTCTTHHH
T ss_pred HHHHHcCC--cc--CC-CcEEEEecccCCCcCHHH
Confidence 34443331 12 22 456789999999999976
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.95 E-value=0.001 Score=69.08 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+|+|+.|+||||++..|.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 251
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.90 E-value=0.0012 Score=69.48 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+|+|..|+||||++..|.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999764
No 252
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.89 E-value=0.0042 Score=67.77 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCccch----HHHH--HHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHH-HHHcCCCcEEEEEec
Q 005973 342 KNYHVVVLDSPGHKDF----VPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFGVDQLIVAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f----~~~~--~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~l-l~~lgip~iIVViNK 414 (666)
.++.++||||||.... ...+ +..+..+|.++||+|+..+. .....+.. ...+++ .-||+||
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq----------~av~~a~~f~~~l~i--~GVIlTK 246 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ----------EALSVARAFDEKVGV--TGLVLTK 246 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT----------HHHHHHHHHHHHTCC--CEEEEES
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH----------HHHHHHHHHHhcCCc--eEEEEeC
Confidence 5678999999995432 2221 12234589999999987541 12222222 223443 3678999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
+|..
T Consensus 247 lD~~ 250 (425)
T 2ffh_A 247 LDGD 250 (425)
T ss_dssp GGGC
T ss_pred cCCc
Confidence 9964
No 253
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.82 E-value=0.0033 Score=69.00 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.+...|+|+|.+++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35677999999999999999999965
No 254
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.71 E-value=0.00058 Score=47.10 Aligned_cols=29 Identities=21% Similarity=0.670 Sum_probs=25.1
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
..|.|.|+.|++.|..+...|-+|.+++.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred CCCceECCeeEeECccccCEEcccCCcCC
Confidence 46789999999999999999999999874
No 255
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0015 Score=48.43 Aligned_cols=31 Identities=19% Similarity=0.587 Sum_probs=28.5
Q ss_pred CCcceeecccccCCCCCcccccccCCCCCcc
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~~~ 77 (666)
..|.|.|+.|.+.|......|-+|++++..-
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~ 38 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESAKPGT 38 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred CCCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence 5688999999999999999999999999664
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0027 Score=66.11 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.-.++|+|+.|+|||||++.|.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999865
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.44 E-value=0.0073 Score=64.36 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=52.7
Q ss_pred hcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccccccchhhhHHHHHHhhhhhhcCcCC
Q 005973 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (666)
Q Consensus 364 ~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv~~~~e~~~~i~~el~~~l~~~~~~~ 443 (666)
.+..+|.+++| +|..+.+. .......+..+...+++ .|+|+||+|+++. +..+. .+++...+...|+
T Consensus 127 i~anvD~v~iv-~a~~P~~~------~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~--~~~~~-~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELS------LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD--EGMDF-VNEQMDIYRNIGY-- 193 (358)
T ss_dssp EEECCCEEEEE-EESTTTCC------HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH--HHHHH-HHHHHHHHHTTTC--
T ss_pred HHhcCCEEEEE-EeCCCCCC------HHHHHHHHHHHHhcCCC-EEEEEECccCCCc--hhHHH-HHHHHHHHHhCCC--
Confidence 35779999976 55555322 12344455556678998 7999999999852 22111 2233334445554
Q ss_pred CCCcEEEeecccCCCccc
Q 005973 444 ASLTWIPLSALENQNLVT 461 (666)
Q Consensus 444 ~~i~iIpvSA~tG~nI~e 461 (666)
+++++||.+|.|+.+
T Consensus 194 ---~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 194 ---RVLMVSSHTQDGLKP 208 (358)
T ss_dssp ---CEEECBTTTTBTHHH
T ss_pred ---cEEEEecCCCcCHHH
Confidence 579999999999866
No 258
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.42 E-value=0.0089 Score=67.13 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=77.6
Q ss_pred HHHHhhhcCCCCCCCCCCceeeEEeEeecC----CCeEEEEEEEEeeeEeeCcEEEEcCCCc---eEEEeeeeecCcccc
Q 005973 477 LLDAIDSLRPPPREFSKPLLMPICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCS 549 (666)
Q Consensus 477 LL~~L~~l~~~~~~~~~p~~~~I~~v~~~~----~G~v~v~G~V~sG~Lk~Gd~v~v~P~~~---~~~VksI~~~~~~v~ 549 (666)
+-+++..+++|.....-.-.+.|.++|..+ .|.+ +..+|..|.|++|..+.+...+. ..+|.||+++...+.
T Consensus 430 ~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~i-aG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ 508 (537)
T 3izy_P 430 LQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPV-AGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTS 508 (537)
T ss_dssp HHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCE-EEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCS
T ss_pred HHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcE-EEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccc
Confidence 333445555555444444567778888765 4677 89999999999999999999885 568999999999999
Q ss_pred eeccCCceeEEeec-cCcCccccccEEe
Q 005973 550 VARAGDNIAVSLQG-IDVSRVMSGGVLC 576 (666)
Q Consensus 550 ~A~aGd~V~l~L~g-id~~~i~~G~VL~ 576 (666)
++..|.-|+|.|.+ . .+++.||+|-
T Consensus 509 ev~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 509 VVKTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp EEETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred eEcCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 99999999999987 5 4889999883
No 259
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0043 Score=66.22 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.-.|+|+|+.|+|||||++.|.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 456999999999999999999865
No 260
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.22 E-value=0.00076 Score=75.41 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred ceeecccccCCCCCcccccccCCCCCc
Q 005973 50 VWSCAICTYDNEEGMSVCDICGVLRTP 76 (666)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~~~~ 76 (666)
.-.|+.|||.|+.+|..|||||++-..
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 467999999999999999999987644
No 261
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.14 E-value=0.026 Score=58.39 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+++|..|+||||++..|.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999765
No 262
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.08 E-value=0.032 Score=54.44 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=46.0
Q ss_pred CCeEEEEEeCCCc-cchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc-CCCcEEEEEeccccc
Q 005973 342 KNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAV 418 (666)
Q Consensus 342 ~~~~i~liDTPGh-~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVViNK~Dlv 418 (666)
..+.++|+|||+. ... .+...+..+|.+|+++...... ...+...+..+..+ +.+ +.+|+|++|..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~--------~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALA--------LDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHH--------HHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchh--------HHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4578999999996 433 2334567799999999876431 23445556666664 566 88999999864
No 263
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.01 E-value=0.024 Score=64.48 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=69.3
Q ss_pred CCceeeEE--eEeecCCCeEEEEEEEEeeeEeeCcEEEEcCCC-ceEEEeeeeecCcccceeccCCceeEEeeccC-cCc
Q 005973 493 KPLLMPIC--DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGID-VSR 568 (666)
Q Consensus 493 ~p~~~~I~--~v~~~~~G~v~v~G~V~sG~Lk~Gd~v~v~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gid-~~~ 568 (666)
.|..+.|. .+|+.+.|.+ +..+|..|.|++|..|.+ +.+ ...+|.||+++.+++.+|..|+-|+|.|.+.. ..+
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i-~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~ 539 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAI-GGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKT 539 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEE-EEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eeEEEEEecceEEcCCCCeE-EEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCC
Confidence 34445444 6888777777 899999999999999998 666 47799999999999999999999999998742 368
Q ss_pred cccccEEecC
Q 005973 569 VMSGGVLCHP 578 (666)
Q Consensus 569 i~~G~VL~~~ 578 (666)
++.||+|-..
T Consensus 540 ~~~~d~~~~~ 549 (594)
T 1g7s_A 540 IHEGDTLYVD 549 (594)
T ss_dssp BCTTCEEEEC
T ss_pred CCCCCEEEEE
Confidence 9999998653
No 264
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.53 E-value=0.0044 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=25.7
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
..|.|.|+.|++.|......|.+|+++|.
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcccCCcCcCCChhhcceecccCCCCC
Confidence 46789999999999999999999999984
No 265
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.16 E-value=0.0039 Score=65.08 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.++|+|++|+|||||+|.|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36999999999999999999853
No 266
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=95.14 E-value=0.0076 Score=41.03 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=26.6
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
.+|-|.|..|.+.|...-..|-.||++|.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKF 30 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTT
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCC
Confidence 35779999999999999999999999984
No 267
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.70 E-value=0.017 Score=44.52 Aligned_cols=29 Identities=21% Similarity=0.566 Sum_probs=26.9
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
..|.|.|..|...|......|..|++++.
T Consensus 28 ~~GsWeC~~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 28 PIGSWECSVCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CSSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCeeeCCeeEccCccCCceeeEcCCcCC
Confidence 56899999999999999999999999874
No 268
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=94.52 E-value=0.025 Score=38.71 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=26.6
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
.+|-|.|+.|-+.|...-..|-+|+.+|.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKY 31 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred CCCCcccCCCCCccccccccccccCCcCC
Confidence 46779999999999999999999999984
No 269
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.46 E-value=0.093 Score=53.94 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc----CCCcEEEEEecccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iIVViNK~Dl 417 (666)
..+.++|||||+..... .+...+..+|.+|+|+...... .......+..+..+ +++.+-+|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDS--------IYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHH--------HHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHH--------HHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999998854321 1233567799999999875321 12344455555543 34422389999984
No 270
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.39 E-value=0.023 Score=62.61 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
....|+++|.+|+||||+..+|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 271
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.36 E-value=0.022 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
+++|+|+.|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999654
No 272
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.23 E-value=0.022 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
..++|+|++|||||||++.|++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998643
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.028 Score=53.32 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
..|+|+|++|||||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998653
No 274
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=94.01 E-value=0.0095 Score=51.42 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCcceeecccccCCCCCcccccccCCCCCcc
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~~~ 77 (666)
....|.|+.|+|.|..+...|.+|+.+|...
T Consensus 6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~ 36 (98)
T 3gj7_B 6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPL 36 (98)
T ss_dssp -------------------------------
T ss_pred CCCcccCCccccCChhhcccccccCCCCCCC
Confidence 3456999999999999999999999999654
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.77 E-value=0.032 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
-.|+|+|++|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 359999999999999999998753
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.70 E-value=0.052 Score=50.70 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|||||||.+.|....+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 356999999999999999999876554
No 277
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.68 E-value=0.032 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.|+|+|+.|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999999653
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.66 E-value=0.04 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
++...|+|+|++|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 344569999999999999999999654
No 279
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.64 E-value=0.034 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.++|+|+.|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998654
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.56 E-value=0.043 Score=53.21 Aligned_cols=26 Identities=42% Similarity=0.406 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
....|+|+|++|+|||||++.|.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998754
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.42 E-value=0.044 Score=50.98 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..|+|+|.+|+|||||.+.|....+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35999999999999999999876554
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.38 E-value=0.039 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.++|+|+.|+|||||++.|++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999998653
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.33 E-value=0.052 Score=52.41 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
...|+|+|+.|+|||||++.|.+..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999987643
No 284
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.27 E-value=0.28 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.+...|+|+|..++|||+|+|.|+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 3567799999999999999998874
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.24 E-value=0.053 Score=52.05 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|||||||.+.|....+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346999999999999999999877554
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.21 E-value=0.052 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
...|+|+|++|||||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999664
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.19 E-value=0.056 Score=51.99 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i 293 (666)
...|+|+|.+|+|||||++.|....|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 3569999999999999999998776553
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.12 E-value=0.059 Score=50.98 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999865
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.06 E-value=0.047 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
--.++|+|+.|||||||++.|++..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3469999999999999999999754
No 290
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.02 E-value=0.06 Score=53.88 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
.+.+.|+|.|.+||||||+.+.|....+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3557899999999999999999987665
No 291
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.01 E-value=0.061 Score=53.51 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~i 293 (666)
...|+|+|++|||||||++.|....+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4579999999999999999999665543
No 292
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.00 E-value=0.2 Score=50.18 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=46.0
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEE-EEEecccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI-VAVNKMDA 417 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI-VViNK~Dl 417 (666)
..+.++|||||+...........+..+|.+|+|+...... .......+..++..+++ ++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT--------AVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC--------HHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch--------HHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 4678999999986543222222233689999999876542 23455666777778888 55 89999985
No 293
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.00 E-value=0.061 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
++..|+|+|.+|+||||+...|....+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999876553
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.86 E-value=0.064 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
..|+|+|++|||||||++.|....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 469999999999999999998654
No 295
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.83 E-value=0.067 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
..|+|+|.+|+|||||.+.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987655
No 296
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.78 E-value=0.062 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.++++|+.|||||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 59999999999999999999653
No 297
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.76 E-value=0.066 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
.|+|+|.+|+||||+.+.|....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.70 E-value=0.067 Score=49.17 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+.|+|+|.+||||||+.+.| ...+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 36899999999999999999 65554
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.70 E-value=0.075 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
..|+|+|.+||||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999987654
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.66 E-value=0.055 Score=50.89 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLL 287 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll 287 (666)
.++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999865
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.59 E-value=0.094 Score=49.47 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|+||||+.+.|....+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457999999999999999999876554
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.54 E-value=0.063 Score=50.52 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
...|+|.|.+||||||+.+.|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999987554
No 303
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.53 E-value=0.082 Score=52.65 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|+.|||||||++.|.+..|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 356999999999999999999876653
No 304
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=92.49 E-value=0.045 Score=46.65 Aligned_cols=29 Identities=21% Similarity=0.666 Sum_probs=25.7
Q ss_pred CCcceeecccccCCCCCcccccccCCCCC
Q 005973 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (666)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~~~ 75 (666)
.+|.|.|+.|++.|..+...|..|++++.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCC
Confidence 56899999999999999999999999874
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.48 E-value=0.086 Score=50.45 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+...|+|.|.+||||||+.+.|....+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4567999999999999999999876543
No 306
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.48 E-value=0.061 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|++|+|||||+|.|++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 5999999999999999999954
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.46 E-value=0.082 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+||||||+.+.|....+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999865553
No 308
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=92.40 E-value=0.11 Score=38.19 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=27.5
Q ss_pred CCcceeec--ccccCCCCCcccccccCCCCCc
Q 005973 47 KPRVWSCA--ICTYDNEEGMSVCDICGVLRTP 76 (666)
Q Consensus 47 ~~~~w~c~--~c~~~n~~~~~~c~~c~~~~~~ 76 (666)
.+|-|.|. .|.+.|...-..|-+||++|..
T Consensus 11 ~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~ 42 (45)
T 1n0z_A 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42 (45)
T ss_dssp CSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred CCCCcCCCCCCCCCEEccccccccccCCcCCC
Confidence 67889999 8999999999999999999953
No 309
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.34 E-value=0.083 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 356899999999999999999853
No 310
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.34 E-value=0.27 Score=47.98 Aligned_cols=66 Identities=15% Similarity=0.291 Sum_probs=47.8
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.+.++|+|+|+... ......+..+|.+|+|+...... .......+..+...+.+.+-+|+|+++..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~--------~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISC--------LTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHH--------HHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCccc--------HHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46799999998544 34455678899999999876431 13455566677777877677899999864
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.33 E-value=0.086 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..+|+++|.+|+||||+...|....+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999876554
No 312
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.31 E-value=0.057 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4999999999999999999853
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.30 E-value=0.062 Score=53.17 Aligned_cols=21 Identities=43% Similarity=0.407 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|+|||||++.|.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999984
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.19 E-value=0.076 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
+...|+|+|++|||||||+++|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34569999999999999999998654
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.17 E-value=0.076 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.++|+|++|||||||++.|....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 48999999999999999998643
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.12 E-value=0.089 Score=50.02 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|+|.+||||||+.+.|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999876654
No 317
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.11 E-value=0.1 Score=50.05 Aligned_cols=26 Identities=35% Similarity=0.224 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
+...|+|+|.+|+||||+.+.|....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998653
No 318
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.07 E-value=0.14 Score=50.31 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEecccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dl 417 (666)
..+.++|||||+.... .....+..+|.+|+|+...... .......+.++..++++.+.+|+|+.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNS--------IKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHH--------HHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHH--------HHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 5678999999985443 3344567899999999886431 1344555667788888878899999983
No 319
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=91.99 E-value=0.029 Score=47.86 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=0.0
Q ss_pred CcceeecccccCCCCCcccccccCCCCCc
Q 005973 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (666)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~~~~ 76 (666)
+|.|.|..|++.|..+...|.+|+++|..
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~ 34 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPG 34 (92)
T ss_dssp -----------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCC
Confidence 57899999999999999999999999954
No 320
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.99 E-value=0.077 Score=54.95 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 005973 267 LNLAIVGHVDSGKSTLSGRLL 287 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll 287 (666)
..++++|++|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.99 E-value=0.077 Score=53.15 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|||||||++.|.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999853
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.93 E-value=0.078 Score=51.06 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 005973 269 LAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~ 289 (666)
|+|+|++|+||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999865
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.91 E-value=0.082 Score=54.99 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|++|+|||||++.|++.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5999999999999999999865
No 324
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.88 E-value=0.074 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.86 E-value=0.1 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.+|+|+|.+|+|||||.+.|.. .+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCC
Confidence 3699999999999999999987 543
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.82 E-value=0.12 Score=48.96 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+...|+|+|.+|+||||+...|....+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467999999999999999999876553
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.80 E-value=0.1 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|+|.+||||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999876654
No 328
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.77 E-value=0.091 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.|+|+|++|+|||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35999999999999999999853
No 329
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.77 E-value=0.097 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 330
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.74 E-value=0.073 Score=53.13 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|+|||||++.|++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999984
No 331
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.70 E-value=0.11 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..|+|+|.+|+|||||...|....+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999999876654
No 332
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.68 E-value=0.075 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999984
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.66 E-value=0.11 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
++...|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999876
No 334
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.63 E-value=0.089 Score=52.91 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|+|||||++.|.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999985
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.60 E-value=0.12 Score=48.50 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
....|+|+|.+|+||||+...|....+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999866543
No 336
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.59 E-value=0.077 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999854
No 337
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.59 E-value=0.087 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.|+|+|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999864
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.58 E-value=0.13 Score=51.33 Aligned_cols=28 Identities=25% Similarity=0.064 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
++.+|+|+|.+||||||+..+|....+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999876554
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.58 E-value=0.11 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|+|.+||||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999876654
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.57 E-value=0.12 Score=53.94 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
....|+|+|++|||||||++.|.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45679999999999999999998753
No 341
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.54 E-value=0.078 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999853
No 342
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.50 E-value=0.08 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999854
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.44 E-value=0.13 Score=51.67 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~i 293 (666)
....|+|+|+.|+|||||++.|...++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34579999999999999999999766643
No 344
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.41 E-value=0.079 Score=53.92 Aligned_cols=22 Identities=41% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|||||||++.|.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999853
No 345
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.40 E-value=0.082 Score=53.63 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|||||||++.|.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999984
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.38 E-value=0.15 Score=53.46 Aligned_cols=27 Identities=41% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
..++.|+|+|++|+|||||++.|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999997654
No 347
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.38 E-value=0.082 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|||||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999853
No 348
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.37 E-value=0.079 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999853
No 349
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.36 E-value=0.3 Score=48.66 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=47.1
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.+.++|||+|+... ......+..+|.+|+|+...... .......+..+...+.+.+-+|+|+++..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~--------~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISS--------ITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHH--------HHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhH--------HHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998544 34455667899999999876421 13455566667777777567899999864
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.36 E-value=0.15 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+..+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 351
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.33 E-value=0.086 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999853
No 352
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.31 E-value=0.062 Score=50.99 Aligned_cols=22 Identities=55% Similarity=0.717 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
..|+|+|.+|+|||||++.|++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999984
No 353
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.31 E-value=0.11 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
.|+|+|.+|+||||+.+.|....+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999987654
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.30 E-value=0.12 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+|+|+.|+|||||+.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999843
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.28 E-value=0.1 Score=53.12 Aligned_cols=22 Identities=50% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999853
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.28 E-value=0.14 Score=48.99 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.....|+|+|.+|+||||+.+.|....+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567999999999999999999876553
No 357
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.27 E-value=0.087 Score=53.38 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5999999999999999999854
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.26 E-value=0.13 Score=50.11 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|+||||+...|....+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 467999999999999999999876654
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.26 E-value=0.093 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=18.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
+...|+|+|.+||||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345799999999999999999986654
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.24 E-value=0.16 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|+||||+...|....+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999876553
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.23 E-value=0.14 Score=49.20 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
...|+|+|.+|+|||||.+.|....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998654
No 362
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.23 E-value=0.099 Score=51.40 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLL 287 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll 287 (666)
.++|+|++|||||||++.|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999988
No 363
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.22 E-value=0.11 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|++|+|||||+..|++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999985
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.22 E-value=0.16 Score=47.99 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
++...|+|+|.+|+||||+...|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999754
No 365
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.20 E-value=0.16 Score=48.61 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+...|+|+|.+|+||||+...|....+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3467999999999999999999876654
No 366
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.18 E-value=0.12 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
...|+|+|.+||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998765
No 367
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.15 E-value=0.071 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=15.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH-Hhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLL-FLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll-~~~ 290 (666)
..|+|+|+.|||||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 359999999999999999998 653
No 368
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.11 E-value=0.091 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4899999999999999999843
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.11 E-value=0.16 Score=48.87 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
....|+|+|.+|+|||||++.|....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999998754
No 370
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.09 E-value=0.12 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+.|+|+|.+||||||+.+.|.. .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 5699999999999999999976 443
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.06 E-value=0.13 Score=49.47 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
+...|+|+|.+|+||||+.+.|....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998653
No 372
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.05 E-value=0.094 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999853
No 373
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.03 E-value=0.094 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.00 E-value=0.14 Score=50.11 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|+||||+.+.|....+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 367999999999999999999876654
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.98 E-value=0.15 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.+...|+|+|.+|+|||||++.|....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999887653
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.95 E-value=0.12 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+...++|+|..|||||||++.|++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3567899999999999999999964
No 377
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.89 E-value=0.099 Score=53.32 Aligned_cols=22 Identities=45% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 378
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.80 E-value=0.1 Score=53.01 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999853
No 379
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.78 E-value=0.1 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999853
No 380
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.69 E-value=0.26 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
....|+|+|.+|||||||..+|....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999998543
No 381
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.67 E-value=0.12 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++++|++|+|||||+|.|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 5899999999999999999854
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.66 E-value=0.1 Score=52.56 Aligned_cols=21 Identities=48% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999984
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.55 E-value=0.16 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=23.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..|+|+|.+|+||||+...|....+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56999999999999999999877664
No 384
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.44 E-value=0.19 Score=48.32 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
....|+|+|..|+|||||++.|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864
No 385
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.41 E-value=0.18 Score=47.77 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
...|+|+|.+|+||||+...|....+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999876654
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.36 E-value=0.16 Score=50.59 Aligned_cols=29 Identities=34% Similarity=0.403 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+.++.|+|.|++|+|||||.+.|....+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999876654
No 387
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.32 E-value=0.15 Score=47.60 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|+|.+|+|||||...|....+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5999999999999999999876654
No 388
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=90.29 E-value=0.074 Score=42.98 Aligned_cols=26 Identities=38% Similarity=0.883 Sum_probs=20.3
Q ss_pred ceeecccccCCCCCcc---------cccccCCCCC
Q 005973 50 VWSCAICTYDNEEGMS---------VCDICGVLRT 75 (666)
Q Consensus 50 ~w~c~~c~~~n~~~~~---------~c~~c~~~~~ 75 (666)
-|.|.+|.|-|..... .|..||+.+.
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 5999999988865544 5888888764
No 389
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.29 E-value=0.57 Score=47.99 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=49.5
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
+.++|||||........ ...+..+|.+|+|+.+.... .......+..+...+++.+-+|+|++|..
T Consensus 202 yD~VIIDtpp~~~~~da-~~l~~~aD~vllVv~~~~~~--------~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYAVNT--------LKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCTHH-HHHTTTCSEEEEEEETTTSB--------HHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchHHH-HHHHHHCCeEEEEEeCCCCc--------HHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 56999999996544322 23456799999999987642 35667778888888988667899999864
No 390
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.29 E-value=0.19 Score=51.96 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
...|+|+|+.|||||||++.|.+...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999987543
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.23 E-value=0.18 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|+|.+|+||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999876553
No 392
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.22 E-value=0.13 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.|+|+|++|+|||||++.|++.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999853
No 393
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.20 E-value=0.14 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..++|+|++|+|||||+..|.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999854
No 394
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.01 E-value=0.14 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|+.|+|||||++.|.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999984
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.99 E-value=0.19 Score=46.25 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|.|.+||||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999876543
No 396
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.93 E-value=0.16 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.|+|+|++|+|||||++.|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999853
No 397
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.91 E-value=0.087 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|++.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 4999999999999999999853
No 398
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.90 E-value=0.13 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999854
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.88 E-value=0.19 Score=48.79 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.+.|+|+|..||||||+.+.|.. .+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 46799999999999999999975 443
No 400
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.84 E-value=0.13 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
-+++|+|+.|+|||||++.|.+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987643
No 401
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.80 E-value=0.27 Score=48.49 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+...|.|+|++||||+|+..+|....+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4455788999999999999999987765
No 402
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.79 E-value=0.61 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.+.|+|++++|||||+.+|+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999843
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.67 E-value=0.2 Score=46.87 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
..+|+|+.|+|||||+.+|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999986544
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.65 E-value=0.13 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|++|+|||||++.|++.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999854
No 405
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.55 E-value=0.16 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|||||||++.|.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4899999999999999999853
No 406
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.49 E-value=0.21 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
....|+|+|.+|||||||..+|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 407
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.42 E-value=1.3 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.+.|.|++++|||||+-+++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999888873
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.38 E-value=0.19 Score=47.16 Aligned_cols=25 Identities=44% Similarity=0.526 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|+|.+|+||||+...|....+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5999999999999999999876553
No 409
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.33 E-value=0.19 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.|+|+|++|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999853
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.31 E-value=0.22 Score=48.38 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..|+|+|.+|+||||+...|....+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 57999999999999999999876654
No 411
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.26 E-value=0.19 Score=50.23 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
....|+|+|.+|||||||...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999987654
No 412
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.08 E-value=1.7 Score=46.76 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLL 287 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll 287 (666)
.+.|+|++|+|||||+..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 59999999999999999876
No 413
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.05 E-value=0.21 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+...|+|+|..|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467999999999999999999865
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.02 E-value=0.24 Score=45.73 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
-+|+|+|.+|+||||+...|...++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999876554
No 415
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.00 E-value=1.1 Score=46.37 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-+.|.|++|+|||||+-.|...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 416
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.98 E-value=0.22 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|+|.+|+||||+...|...++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999876553
No 417
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.92 E-value=0.19 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..++|+|++|+|||||++.|.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999843
No 418
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.90 E-value=0.2 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3899999999999999999853
No 419
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.87 E-value=0.26 Score=48.12 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
+|+|+|++||||+|+..+|....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999987765
No 420
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.86 E-value=0.12 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.|+|+|..|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 421
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.81 E-value=0.3 Score=47.09 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..+..|+|+|.+||||||+.+.|....|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45688999999999999999999876444
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.78 E-value=0.28 Score=48.28 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
..+|+|+|.+|+||||+...|....+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999876654
No 423
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.71 E-value=2 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.+.|+|++++|||||+.+|...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999854
No 424
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.65 E-value=0.23 Score=46.59 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.|+|.|.+||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 425
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.64 E-value=0.25 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|+|.+|+|||||..+|....+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5899999999999999999876553
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.62 E-value=0.27 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|+|.+|+||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999876553
No 427
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.62 E-value=0.27 Score=46.35 Aligned_cols=23 Identities=35% Similarity=0.224 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.|+|.|..|+||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998654
No 428
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.49 E-value=0.18 Score=56.12 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.+|+|+|++|||||||++.|++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999984
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.47 E-value=0.26 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+|+|..|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999754
No 430
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.46 E-value=0.21 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3899999999999999999854
No 431
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.44 E-value=0.24 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.089 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.|+|+|++|+|||||++.|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999864
No 432
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.43 E-value=1.7 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.+.|.|++++|||||+.+|...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHH
Confidence 35899999999999999999854
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.41 E-value=0.3 Score=48.09 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCc--cchhhh
Q 005973 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR--ITQKQM 298 (666)
Q Consensus 263 ~~~~~~V~IiG~~naGKSTLi~~Ll~~~~~--i~~~~~ 298 (666)
......|+|+|.+|+||||+.+.|...++. ++...+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 345668999999999999999999876663 444433
No 434
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.35 E-value=0.32 Score=46.34 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.|+|.|.+|+||||+...|....+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999876553
No 435
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.29 E-value=0.22 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3899999999999999999854
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.28 E-value=0.26 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+|+|.+||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 437
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.21 E-value=1.5 Score=43.63 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHc------CCCcEE-EEEec
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLI-VAVNK 414 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~l------gip~iI-VViNK 414 (666)
..+.++|||||+..... ....+..+|.+|+|+...... .......+..+..+ +++ ++ +|+|+
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~-~~gvv~N~ 178 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYA--------LEGVAGLLATLEEVRAGLNPRLR-LLGILVTM 178 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHH--------HHHHHHHHHHHHHHHHHTCTTCE-EEEEEEES
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHH--------HHHHHHHHHHHHHHHHHhCCCce-EEEEEEEe
Confidence 46789999999965432 334456799999999986531 11222333333322 444 53 89999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
.|..
T Consensus 179 ~~~~ 182 (257)
T 1wcv_1 179 YDGR 182 (257)
T ss_dssp BCTT
T ss_pred ECCC
Confidence 9854
No 438
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.16 E-value=0.26 Score=49.67 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.+|+|+|.+|+|||||.+.|....+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45999999999999999999876654
No 439
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.13 E-value=1 Score=47.33 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-++|.|++|+|||||+-.|...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3889999999999999988754
No 440
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.10 E-value=0.77 Score=44.87 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=46.8
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcC--CCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lg--ip~iIVViNK~Dlv 418 (666)
.+.++|||||+.... .....+..+|.+|+|+...... .......+..+..++ ...+-+|+|+.+..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQS--------LRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHH--------HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHH--------HHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 467999999986533 3444577899999999876421 234556667777777 34478999999854
No 441
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.07 E-value=0.35 Score=49.32 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
....|+|+|.+||||||+.+.|. ..+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 45789999999999999999998 4443
No 442
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.06 E-value=0.23 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4899999999999999999854
No 443
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.03 E-value=0.23 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3899999999999999999853
No 444
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.94 E-value=0.23 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3899999999999999999854
No 445
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=87.92 E-value=0.53 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.+.|.|++|+|||||..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999984
No 446
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=87.91 E-value=0.41 Score=35.56 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=27.2
Q ss_pred ceeecccccCCCCCcccccccCCCCCcccc
Q 005973 50 VWSCAICTYDNEEGMSVCDICGVLRTPLVN 79 (666)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~~~~~~~ 79 (666)
.|+|.-|.--|+..+..|..|=.+|...+.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlp 40 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWALRKDWYS 40 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCCBCCCCCC
T ss_pred eeecccccccCCCccchhHHHHHhhcccCC
Confidence 699999999999999999999999977543
No 447
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.87 E-value=0.28 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|++|+|||||+..|+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999843
No 448
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.81 E-value=0.24 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4899999999999999999854
No 449
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.40 E-value=0.32 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhC
Q 005973 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
|+++|++|+|||||++.|.+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999986543
No 450
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.24 E-value=0.28 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.|+|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 34999999999999999999864
No 451
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.24 E-value=1.5 Score=43.57 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCC-cEEEEEecccc
Q 005973 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDA 417 (666)
Q Consensus 342 ~~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVViNK~Dl 417 (666)
..+.++|||||+.... .....+..+|.+|+|+...... .......+..+..++.. ++.+|+|++..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWA--------VESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTH--------HHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHH--------HHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 3577999999986533 3444566799999999986532 12344556666666532 37899999953
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.13 E-value=0.33 Score=46.84 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
+..|+|+|.+|+||||+...|....+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987655
No 453
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=87.12 E-value=0.31 Score=35.50 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=26.9
Q ss_pred cceeecccccCCCCCcccccccCCCCCccc
Q 005973 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLV 78 (666)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~~~~~~ 78 (666)
..|+|.-|.--|+.....|..|=.+|...+
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wl 41 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRENWL 41 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSSCS
T ss_pred ceEecccccccCCCccchhhHHHhhccccC
Confidence 349999999999999999999999997643
No 454
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.99 E-value=0.3 Score=52.47 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4899999999999999999853
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.93 E-value=0.48 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
+...|+|.|.+|+||||+++.|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999987654
No 456
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.87 E-value=0.35 Score=49.30 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|++|+|||||+..|.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 457
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.80 E-value=0.44 Score=45.95 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|+|+|.+|+||||+...|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999754
No 458
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.71 E-value=0.37 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+++|+|+.|+|||||++.|++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999965
No 459
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.66 E-value=0.37 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.|+|+|++|+|||||++.|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998653
No 460
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.65 E-value=0.21 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4899999999999999999854
No 461
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.37 E-value=0.49 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|.|.|++|+|||+|+.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999853
No 462
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.33 E-value=0.93 Score=45.89 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
.+.++|||||+....... ...+..+|.+|+|+.+.... .......+..+...+++.+-+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~d~-~~l~~~aD~vilVv~~~~~~--------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTDA-QLFSKFTGNVVYVVNSENNN--------KDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSHH-HHHHHHHCEEEEEEETTSCC--------HHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHHH-HHHHHHCCEEEEEEeCCCCc--------HHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 367999999996443222 22345689999999987642 34566677778888887334899999864
No 463
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.96 E-value=1.3 Score=45.40 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=47.7
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCCCcEEEEEeccccc
Q 005973 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (666)
Q Consensus 344 ~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVViNK~Dlv 418 (666)
+.++|||||+........ ..+..+|.+|+|+.+.... .......+..+...+++.+-+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~d~~-~l~~~ad~vilV~~~~~~~--------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNT--------AKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTHHH-HHGGGCSEEEEEEETTTSC--------TTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHHHH-HHHHHCCEEEEEEcCCCCh--------HHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 579999999965433222 2346799999999887642 34667777788888887444889999864
No 464
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.80 E-value=0.42 Score=43.91 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
-.+|+|+.|+|||||+.+|...+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998543
No 465
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.68 E-value=0.43 Score=45.77 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|++|+|||||+..|+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 466
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.66 E-value=0.2 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999853
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.66 E-value=0.26 Score=50.67 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=19.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
+.+.|+|.|.+|||||||.+.|....+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999987544
No 468
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.64 E-value=2.7 Score=43.18 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.+.|.|++++|||||+-+|...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999853
No 469
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.50 E-value=1.2 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.+.|.|.+++|||||+-+|+..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998843
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.30 E-value=0.4 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.262 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999864
No 471
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.29 E-value=0.44 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999875
No 472
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.25 E-value=0.45 Score=46.38 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 005973 268 NLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~ 288 (666)
.++|+|++|+|||||+..|+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999985
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.15 E-value=0.57 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
...|+|+|++++|||||...|....+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45689999999999999999987654
No 474
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.08 E-value=0.49 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.|+|+|++|+|||||++.|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 39999999999999999998653
No 475
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.97 E-value=0.46 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 005973 269 LAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 269 V~IiG~~naGKSTLi~~Ll~~ 289 (666)
++|+|+.|||||||+++|++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 669999999999999999865
No 476
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.91 E-value=0.39 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5999999999999999999853
No 477
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.81 E-value=0.42 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999853
No 478
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.76 E-value=0.6 Score=46.41 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 005973 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (666)
Q Consensus 265 ~~~~V~IiG~~naGKSTLi~~Ll~~~~~ 292 (666)
.+.+++|+|.+||||||+..+|....+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999876654
No 479
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.65 E-value=0.98 Score=44.54 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEeCCCCccccccccchhHHHHHHHHHHHcCC--------CcEEEEEec
Q 005973 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--------DQLIVAVNK 414 (666)
Q Consensus 343 ~~~i~liDTPGh~~f~~~~~~~~~~aD~aIlVVDa~~g~~e~~~~~~~~qt~e~l~ll~~lgi--------p~iIVViNK 414 (666)
.+.++|+|||+... ......+..+|.+|+|+...... .......+..+...+. ..+.+|+|+
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~ 182 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSS--------VRDSDRILGILASKSRRAENGEEPIKEHLLLTR 182 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHH--------HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhH--------HHHHHHHHHHHHHhccccccccCCcceEEEEec
Confidence 68899999998544 34555667899999999876421 1233444455544431 237899999
Q ss_pred cccc
Q 005973 415 MDAV 418 (666)
Q Consensus 415 ~Dlv 418 (666)
.+..
T Consensus 183 ~~~~ 186 (260)
T 3q9l_A 183 YNPG 186 (260)
T ss_dssp ECHH
T ss_pred CCcc
Confidence 9853
No 480
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.47 E-value=0.51 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
-.++|+|++|+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999999999999765
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.31 E-value=0.98 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.+.|.|++++|||||+-+|+..
T Consensus 76 li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 4788999999999999998843
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.22 E-value=0.55 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
+++|+|+.|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5999999999999999999854
No 483
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.99 E-value=0.58 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..|+|+|.+|+||||+.++|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 484
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.99 E-value=0.7 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..|.|+|++|+|||||+.+|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999854
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.78 E-value=0.51 Score=53.64 Aligned_cols=22 Identities=36% Similarity=0.215 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5999999999999999999874
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.66 E-value=0.46 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|||||||++.|.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5999999999999999999864
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.65 E-value=0.72 Score=49.29 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
-.|+|+|++|+|||||++.|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999998654
No 488
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=83.62 E-value=0.74 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
..|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999987654
No 489
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.16 E-value=0.4 Score=54.31 Aligned_cols=22 Identities=50% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999853
No 490
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.16 E-value=0.42 Score=54.22 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5999999999999999999854
No 491
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.06 E-value=0.62 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|.|.|++|+|||||+..|...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999843
No 492
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.05 E-value=0.75 Score=43.67 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
..|.|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999843
No 493
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.91 E-value=0.59 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999853
No 494
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.81 E-value=0.68 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.184 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLF 288 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~ 288 (666)
-.++|+|++|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999984
No 495
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.79 E-value=0.78 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 005973 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 266 ~~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
...|.|.|++|+|||||+.+|...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 496
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.76 E-value=0.52 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
-.++|+|+.|+|||||++.|.+.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999864
No 497
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.46 E-value=0.8 Score=48.19 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
..|+|+|++++|||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4699999999999999999997765
No 498
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.39 E-value=0.46 Score=47.58 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 005973 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (666)
Q Consensus 264 ~~~~~V~IiG~~naGKSTLi~~Ll~~~ 290 (666)
.+...|+|.|..|+||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998664
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.38 E-value=0.81 Score=48.11 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 005973 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (666)
Q Consensus 267 ~~V~IiG~~naGKSTLi~~Ll~~~~ 291 (666)
..|+|+|++++|||||...|....+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4699999999999999999997765
No 500
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.33 E-value=0.63 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 005973 268 NLAIVGHVDSGKSTLSGRLLFL 289 (666)
Q Consensus 268 ~V~IiG~~naGKSTLi~~Ll~~ 289 (666)
.++|+|+.|+|||||++.|.+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
Done!