BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005974
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 376 RNDFRAVMNHEMRTLMHAIIALSSLLL----ETDLTPEQRVMIETVLKSSNXXXXXXXXX 431
+ +F A ++HE+RT + AI A + + E DL+ + +E ++ SN
Sbjct: 20 KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-LKEFLEVIIDQSNHLENLLNEL 78
Query: 432 XXXSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR 491
SRLE SL+++ +L ++ + IK AS +++ P A D R
Sbjct: 79 LDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTR 138
Query: 492 LMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 547
+ Q +LN++ N VK++K + YV +I DG + V+
Sbjct: 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILD------------------EKDGGVLIIVE- 179
Query: 548 NDSGCGVPPQDIPLLFTKFAQSRGS-SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 606
D+G G+P +F +F + S + + P GLGLAI + V L GG IW++SE + K
Sbjct: 180 -DNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGK 237
Query: 607 GS 608
GS
Sbjct: 238 GS 239
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 376 RNDFRAVMNHEMRTLMHAIIALSSLLL----ETDLTPEQRVMIETVLKSSNXXXXXXXXX 431
+ +F A ++HE+RT + AI A + + E DL+ + +E ++ SN
Sbjct: 20 KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-LKEFLEVIIDQSNHLENLLNEL 78
Query: 432 XXXSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR 491
SRLE SL+++ +L ++ + IK AS +++ P A D R
Sbjct: 79 LDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTR 138
Query: 492 LMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 547
+ Q +LN++ N VK++K + YV +I DG + V+
Sbjct: 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILD------------------EKDGGVLIIVE- 179
Query: 548 NDSGCGVPPQDIPLLFTKFAQSRGS-SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 606
D+G G+P +F +F + S + + P GLGLAI + V L GG IW++SE + K
Sbjct: 180 -DNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGK 237
Query: 607 GS 608
GS
Sbjct: 238 GS 239
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 23/137 (16%)
Query: 479 PELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVST 537
P+ Y D+ ++ Q + NI+ NA+K++ EG +V+ V + E L
Sbjct: 31 PDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEEL------------- 77
Query: 538 DGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ-SRGSSCQTPRAGLGLAICRRFVNLMGGH 596
L + V D G G+P +D+ +F +F + + + + GLGLAI + V GG
Sbjct: 78 -----LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGD 132
Query: 597 IWLDS-EGLDKGSTVTF 612
IW DS EG KG+T+TF
Sbjct: 133 IWADSIEG--KGTTITF 147
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 118/284 (41%), Gaps = 56/284 (19%)
Query: 352 RNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQR 411
++ L +++ AL A R + DF +++E+RT + II S LL D E
Sbjct: 23 QSALADRSAALAEAER-------LKRDFVGNVSYELRTPLTTIIGYSELLERADGISE-- 73
Query: 412 VMIETVLKSSNXXXXXXXXXXXXSRLEDGSLEL---DNGPFNLQIVLREVIKLI-----K 463
+ N +R D L++ D G L+I V L+ +
Sbjct: 74 -------RGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQER 126
Query: 464 PVASCKKLSMTLIMAPELPTYAV-GDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKP 521
+ + +TL + E + GD KRL QT+ ++V NA++ T G V++ A A
Sbjct: 127 ALKDAQLGGVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALG 186
Query: 522 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKF-AQSRGSSCQTPRAG 580
E +R+ V+D+G GVP +F +F + RG G
Sbjct: 187 E--------------------VRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGP------G 220
Query: 581 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGS 624
LGLA+ + V L GG + L+SE G+ TF L PG+
Sbjct: 221 LGLALVKALVELHGGWVALESE---PGNGSTFTCHLPETQQPGA 261
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 449 FNLQIVLREVIKLIKPVA--SCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKF 506
N+++ + VI +++P+A SC + TL P +G+ ++ Q +LN++ NA+
Sbjct: 84 LNVKLEIERVIDILRPLANMSCVDIQATL-----APFSVIGEREKFRQCLLNVMKNAI-- 136
Query: 507 TKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKF 566
E++ + + Y +G +R+ D+G G+ + + L +
Sbjct: 137 ---------------EAMPNGGTLQVYVSIDNGRVLIRIA--DTGVGMTKEQLERLGEPY 179
Query: 567 AQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 617
++G GLG+ + R + M G I ++SE + KG+TV+ + L
Sbjct: 180 FTTKGVKG----TGLGMMVVYRIIESMNGTIRIESE-IHKGTTVSIYLPLA 225
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 444 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAV-GDEKRLMQTILNIVGN 502
L+ FNL ++REV L + +K+++ + V D R+ Q ++N+V N
Sbjct: 198 LEFTEFNLNELIREVYVLFE--EKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQN 255
Query: 503 AVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 561
A++ T E G + I S D + +RV V +SG +P +
Sbjct: 256 AIEATGENGKIKI--------------------TSEDMYTKVRVSVWNSGPPIPEELKEK 295
Query: 562 LFTKFAQSRGSSCQTPRAGLGLAICRRFV-NLMGGHIWLDSEGLDKGSTVTFLV 614
+F+ F + +T GLGL+ICR+ + + GG IW +E + G F +
Sbjct: 296 IFSPFF-----TTKTQGTGLGLSICRKIIEDEHGGKIW--TENRENGVVFIFEI 342
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 32/167 (19%)
Query: 449 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAV-GDEKRLMQTILNIVGNAVKFT 507
FNL ++REV L + +K+++ + V D R+ Q ++N+V NA++ T
Sbjct: 6 FNLNELIREVYVLFE--EKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT 63
Query: 508 KE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKF 566
E G + I S D + +RV V +SG +P + +F+ F
Sbjct: 64 GENGKIKI--------------------TSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF 103
Query: 567 AQSRGSSCQTPRAGLGLAICRRFV-NLMGGHIWLDSEGLDKGSTVTF 612
++ T GLGL+ICR+ + + GG IW +E + G F
Sbjct: 104 FTTK-----TQGTGLGLSICRKIIEDEHGGKIW--TENRENGVVFIF 143
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 30/146 (20%)
Query: 454 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 513
+L +I + V K +++++ ++PE+ VG++ ++ + N++ NA K+ E +V
Sbjct: 14 LLDNLISALNKVYQRKGVNISMDISPEISF--VGEQNDFVEVMGNVLDNACKYCLE-FVE 70
Query: 514 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSS 573
I A TD H ++ V+ D G G+P L+F RG
Sbjct: 71 ISAR------------------QTDDHLHIFVE--DDGPGIPHSKRSLVF-----DRGQR 105
Query: 574 CQT--PRAGLGLAICRRFVNLMGGHI 597
T P G+GLA+ R G I
Sbjct: 106 ADTLRPGQGVGLAVAREITEQYAGQI 131
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 479 PELPTYAVGDEKRLMQTILNIVGNAVK-FTKEGYVSIIASVAKPESLSDWRPPEFYPVST 537
P LP A D ++ Q +LNIV NA++ EG I+ + + ++
Sbjct: 37 PSLPELA-HDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA------------FQLTL 83
Query: 538 DGHFY---LRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMG 594
G Y R+ V D+G G+PP LF R GLGL+I R ++
Sbjct: 84 HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGT-----GLGLSIARNLIDQHS 138
Query: 595 GHIWLDS 601
G I S
Sbjct: 139 GKIEFTS 145
>pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
Length = 150
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 543 LRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602
+ + ++D+G GVP + ++F +F SRGS+ +GLGLA+ + L GG L++
Sbjct: 78 VEIAIDDNGSGVPEGERQVVFERF--SRGSTASHSGSGLGLALVAQQAQLHGGTASLENS 135
Query: 603 GL 604
L
Sbjct: 136 PL 137
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 546 QVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFVNLMGGHIWLDS 601
QV D G G+ P+ LF F RG S +T GLGLAI +R V+ G + L +
Sbjct: 81 QVEDDGPGIAPEQRKHLFQPFV--RGDSARTISGTGLGLAIVQRIVDNHNGMLELGT 135
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 530
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 538 DGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRA--GLGLAICRRFVNLMGG 595
D +V V D+G G+PPQ++P F + S + R GLG+ + +
Sbjct: 65 DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQD 124
Query: 596 H-IWLDSEGLDKGSTVTFLVKLGICNN 621
I +++ ++ TF +K+ I N
Sbjct: 125 KPIEIETSPVNSKRIYTFKLKIDINKN 151
>pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 538 DGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRA--GLGLAICRRFVNLMGG 595
D +V V D+G G+PPQ++P F + S + R GLG+ + +
Sbjct: 64 DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQD 123
Query: 596 H-IWLDSEGLDKGSTVTFLVKLGICNN 621
I +++ ++ TF +K+ I N
Sbjct: 124 KPIEIETSPVNSKRIYTFKLKIDINKN 150
>pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 538 DGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRA--GLGLAICRRFVNLMGG 595
D +V V D+G G+PPQ++P F + S + R GLG+ + +
Sbjct: 66 DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQD 125
Query: 596 H-IWLDSEGLDKGSTVTFLVKLGICNN 621
I +++ ++ TF +K+ I N
Sbjct: 126 KPIEIETSPVNSKRIYTFKLKIDINKN 152
>pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 538 DGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGH- 596
D +V V D+G G+PPQ++P F + S + R GL + + V H
Sbjct: 64 DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLGV-KAAVLYSQXHQ 122
Query: 597 ---IWLDSEGLDKGSTVTFLVKLGICNN 621
I +++ ++ TF +K+ I N
Sbjct: 123 DKPIEIETSPVNSKRIYTFKLKIDINKN 150
>pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 538 DGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGH- 596
D +V V D+G G+PPQ++P F + S + R GL + + V H
Sbjct: 67 DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLGV-KAAVLYSQXHQ 125
Query: 597 ---IWLDSEGLDKGSTVTFLVKLGICNN 621
I +++ ++ TF +K+ I N
Sbjct: 126 DKPIEIETSPVNSKRIYTFKLKIDINKN 153
>pdb|3JZ3|A Chain A, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
pdb|3JZ3|B Chain B, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
Length = 222
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 547 VNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHI 597
V D+G GV P+ + + +F + G + +GLGL+I +R L G ++
Sbjct: 150 VRDNGPGVTPEALARIGERFYRPPGQTATG--SGLGLSIVQRIAKLHGXNV 198
>pdb|1U0K|A Chain A, The Structure Of A Predicted Epimerase Pa4716 From
Pseudomonas Aeruginosa
pdb|1U0K|B Chain B, The Structure Of A Predicted Epimerase Pa4716 From
Pseudomonas Aeruginosa
Length = 288
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 276 PPDIVAVRVPLLHL--------SNFQINDWPELPAKSYAVMVLMLPTDG--GRKWRDHEL 325
PP +V+ +P L L Q+ND E K A V +L DG GR W + L
Sbjct: 156 PPRVVSTGLPYLLLPVTAEALGRARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDN--L 213
Query: 326 ELIDVVADQVAVALSHAAILEDSMRARNQ 354
L++ VA A A ++E + AR +
Sbjct: 214 GLVEDVATGSAAGPVAAYLVEYGLAARGE 242
>pdb|3W2Z|A Chain A, Crystal Structure Of The Cyanobacterial Protein
Length = 198
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 289 LSNFQINDW---PELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 345
L F+I + P A+ ++ G R+W + E + V Q +A+SHA L
Sbjct: 127 LEQFEIKAYIIVPVFAAEKLWGLLAAYQNSGTREWVEWESSFLTQVGLQFGIAISHAEYL 186
Query: 346 EDSMRARNQLM 356
E + Q++
Sbjct: 187 EQTRLQSEQMI 197
>pdb|3OC2|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 From
Pseudomonas Aeruginosa
pdb|3OCL|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 From
Pseudomonas Aeruginosa In Complex With Carbenicillin
pdb|3OCN|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 From
Pseudomonas Aeruginosa In Complex With Ceftazidime
Length = 564
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 144 LLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELG 203
L V + LK+R + +++ + + G+ + L+ ++R H L+ L+E G
Sbjct: 171 LAGVPGKRQVLKDRRGRVIKDV-QVTKNAKPGKTL-ALSIDLRLQYLAHRELRNALLENG 228
Query: 204 RTLGLEECALWMPSRTGLNLELS----YTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLP 259
G + M +TG L ++ Y NN+ + + N ++ DVF ++ P
Sbjct: 229 AKAG---SLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMI-DVFEPGSTVK-P 283
Query: 260 YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQIND 296
++ A L GR+ P DIV V L + + I D
Sbjct: 284 FSMSAA---LASGRWKPSDIVDVYPGTLQIGRYTIRD 317
>pdb|4FSF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pbp3 Complexed
With Compound 14
Length = 536
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 144 LLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELG 203
L V + LK+R + +++ + + G+ + L+ ++R H L+ L+E G
Sbjct: 143 LAGVPGKRQVLKDRRGRVIKDV-QVTKNAKPGKTL-ALSIDLRLQYLAHRELRNALLENG 200
Query: 204 RTLGLEECALWMPSRTGLNLELS----YTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLP 259
G + M +TG L ++ Y NN+ + + N ++ DVF ++ P
Sbjct: 201 AKAG---SLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMI-DVFEPGSTVK-P 255
Query: 260 YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQIND 296
++ A L GR+ P DIV V L + + I D
Sbjct: 256 FSMSAA---LASGRWKPSDIVDVYPGTLQIGRYTIRD 289
>pdb|3PBN|A Chain A, Crystal Structure Of Apo Pbp3 From Pseudomonas Aeruginosa
pdb|3PBO|A Chain A, Crystal Structure Of Pbp3 Complexed With Ceftazidime
pdb|3PBQ|A Chain A, Crystal Structure Of Pbp3 Complexed With Imipenem
pdb|3PBR|A Chain A, Crystal Structure Of Pbp3 Complexed With Meropenem
pdb|3PBS|A Chain A, Crystal Structure Of Pbp3 Complexed With Aztreonam
pdb|3PBT|A Chain A, Crystal Structure Of Pbp3 Complexed With Mc-1
Length = 538
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 144 LLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELG 203
L V + LK+R + +++ + + G+ + L+ ++R H L+ L+E G
Sbjct: 145 LAGVPGKRQVLKDRRGRVIKDV-QVTKNAKPGKTL-ALSIDLRLQYLAHRELRNALLENG 202
Query: 204 RTLGLEECALWMPSRTGLNLELS----YTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLP 259
G + M +TG L ++ Y NN+ + + N ++ DVF ++ P
Sbjct: 203 AKAG---SLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMI-DVFEPGSTVK-P 257
Query: 260 YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQIND 296
++ A L GR+ P DIV V L + + I D
Sbjct: 258 FSMSAA---LASGRWKPSDIVDVYPGTLQIGRYTIRD 291
>pdb|2ZTC|A Chain A, Mtruva Form Ii
pdb|2ZTC|B Chain B, Mtruva Form Ii
pdb|2ZTC|C Chain C, Mtruva Form Ii
pdb|2ZTC|D Chain D, Mtruva Form Ii
pdb|2ZTD|A Chain A, Mtruva Form Iii
pdb|2ZTD|B Chain B, Mtruva Form Iii
pdb|2ZTE|A Chain A, Mtruva Form Iv
Length = 212
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 285 PLLHLSNFQINDWPELP---AKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 341
P L ++ ++D P L A + +P G R LEL D+V VA +
Sbjct: 98 PRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLEL----RDKVGVAATG 153
Query: 342 AAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSL 400
A+ + R+ ++E V L A ++AE+A D NH+ T ALS L
Sbjct: 154 GALSTNGHAVRSPVVEALVGLGFAAKQAEEA----TDTVLAANHDATTSSALRSALSLL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,157,425
Number of Sequences: 62578
Number of extensions: 706923
Number of successful extensions: 1976
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 26
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)