Query 005974
Match_columns 666
No_of_seqs 462 out of 4066
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 16:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 9.7E-45 2.1E-49 386.9 48.8 391 154-620 488-883 (890)
2 PRK11091 aerobic respiration c 100.0 3.1E-39 6.7E-44 376.8 44.6 264 370-661 277-542 (779)
3 PRK10618 phosphotransfer inter 100.0 2E-39 4.3E-44 372.9 36.4 275 358-661 432-706 (894)
4 PRK10490 sensor protein KdpD; 100.0 4.5E-37 9.8E-42 357.3 52.1 388 156-618 493-884 (895)
5 PRK13837 two-component VirA-li 100.0 2.1E-36 4.5E-41 353.2 52.7 449 159-661 260-714 (828)
6 PRK10841 hybrid sensory kinase 100.0 1.5E-36 3.3E-41 354.4 36.2 241 357-618 428-669 (924)
7 TIGR02956 TMAO_torS TMAO reduc 100.0 6.7E-36 1.4E-40 358.0 39.2 270 363-662 451-720 (968)
8 PRK15347 two component system 100.0 2.4E-35 5.3E-40 351.4 38.0 242 354-619 376-617 (921)
9 PRK11107 hybrid sensory histid 100.0 6.7E-35 1.5E-39 347.7 40.4 282 354-661 271-553 (919)
10 PRK11466 hybrid sensory histid 100.0 3.4E-35 7.3E-40 349.5 37.1 277 352-661 420-698 (914)
11 COG5002 VicK Signal transducti 100.0 1E-36 2.2E-41 294.1 18.8 227 373-620 222-452 (459)
12 TIGR02916 PEP_his_kin putative 100.0 4.3E-33 9.2E-38 318.7 50.0 368 176-615 305-679 (679)
13 PRK09303 adaptive-response sen 100.0 8.9E-34 1.9E-38 302.0 32.5 240 356-617 131-378 (380)
14 PRK09959 hybrid sensory histid 100.0 1.1E-32 2.4E-37 336.5 33.9 279 360-661 696-975 (1197)
15 COG4251 Bacteriophytochrome (l 100.0 1.1E-31 2.4E-36 278.0 33.5 387 178-620 330-745 (750)
16 PRK11006 phoR phosphate regulo 100.0 7.9E-30 1.7E-34 277.3 38.6 219 376-618 204-425 (430)
17 COG3275 LytS Putative regulato 100.0 9.4E-29 2E-33 248.8 35.3 444 50-620 93-555 (557)
18 COG4191 Signal transduction hi 100.0 1.6E-29 3.4E-34 263.1 30.4 213 375-616 383-601 (603)
19 PRK10604 sensor protein RstB; 100.0 4.2E-29 9.2E-34 271.3 30.0 234 355-618 191-425 (433)
20 COG3852 NtrB Signal transducti 100.0 1.3E-29 2.8E-34 241.9 22.4 222 374-618 130-356 (363)
21 PRK10364 sensor protein ZraS; 100.0 5.1E-27 1.1E-31 257.4 46.2 214 374-618 235-450 (457)
22 TIGR02938 nifL_nitrog nitrogen 100.0 4.7E-29 1E-33 276.3 29.9 217 375-616 275-494 (494)
23 PRK10815 sensor protein PhoQ; 100.0 2.2E-28 4.7E-33 268.1 30.8 235 355-617 245-479 (485)
24 PRK10755 sensor protein BasS/P 100.0 2.4E-27 5.2E-32 251.4 28.9 214 374-617 135-351 (356)
25 PRK10549 signal transduction h 100.0 3.3E-27 7.1E-32 259.9 30.5 242 353-618 217-460 (466)
26 TIGR03785 marine_sort_HK prote 100.0 4.9E-27 1.1E-31 267.4 30.6 240 353-615 462-703 (703)
27 PRK09835 sensor kinase CusS; P 100.0 5.3E-26 1.1E-30 251.5 31.7 238 354-616 240-480 (482)
28 TIGR01386 cztS_silS_copS heavy 100.0 3.3E-26 7.1E-31 251.3 29.1 237 353-615 218-457 (457)
29 PRK13557 histidine kinase; Pro 100.0 6.4E-26 1.4E-30 254.4 31.5 264 375-660 162-431 (540)
30 PRK09470 cpxA two-component se 99.9 8.2E-26 1.8E-30 248.5 30.9 238 353-617 220-458 (461)
31 PRK11100 sensory histidine kin 99.9 6.7E-26 1.4E-30 250.1 30.3 240 353-617 234-474 (475)
32 PRK10337 sensor protein QseC; 99.9 9.6E-26 2.1E-30 247.0 30.2 234 353-614 214-449 (449)
33 TIGR02966 phoR_proteo phosphat 99.9 5.2E-26 1.1E-30 238.5 26.9 216 376-614 114-333 (333)
34 PRK09467 envZ osmolarity senso 99.9 8.8E-26 1.9E-30 246.3 28.6 229 353-617 206-434 (435)
35 PRK11073 glnL nitrogen regulat 99.9 1.2E-25 2.7E-30 237.6 27.7 217 375-616 129-347 (348)
36 KOG0519 Sensory transduction h 99.9 4.3E-29 9.3E-34 284.0 0.9 628 33-660 29-682 (786)
37 COG5000 NtrY Signal transducti 99.9 4.6E-24 1E-28 221.2 33.3 211 376-616 486-708 (712)
38 PRK10600 nitrate/nitrite senso 99.9 3.1E-22 6.7E-27 225.3 51.1 357 156-618 200-558 (569)
39 PRK11360 sensory histidine kin 99.9 1.6E-24 3.4E-29 246.4 29.5 214 375-618 389-603 (607)
40 PRK11644 sensory histidine kin 99.9 2.6E-23 5.6E-28 227.9 32.5 248 320-616 245-494 (495)
41 COG0642 BaeS Signal transducti 99.9 4.3E-23 9.4E-28 215.4 30.1 218 375-619 114-332 (336)
42 COG3850 NarQ Signal transducti 99.9 4.1E-21 8.8E-26 197.5 41.7 341 153-616 223-568 (574)
43 PRK13560 hypothetical protein; 99.9 3.2E-23 6.8E-28 244.2 25.9 209 363-617 592-804 (807)
44 COG4192 Signal transduction hi 99.9 1.1E-21 2.3E-26 196.3 26.9 215 375-617 450-667 (673)
45 COG3290 CitA Signal transducti 99.9 1.9E-18 4.2E-23 179.8 41.3 195 378-619 335-534 (537)
46 PRK11086 sensory histidine kin 99.9 5E-21 1.1E-25 215.0 22.5 194 377-619 340-538 (542)
47 PRK15053 dpiB sensor histidine 99.9 1.5E-20 3.3E-25 211.1 25.3 193 380-617 342-540 (545)
48 PRK10935 nitrate/nitrite senso 99.8 3.4E-17 7.3E-22 184.9 45.1 188 383-617 367-560 (565)
49 COG3851 UhpB Signal transducti 99.8 2.4E-17 5.3E-22 160.8 28.4 245 322-615 248-493 (497)
50 PRK13559 hypothetical protein; 99.8 1.6E-18 3.5E-23 184.2 21.6 185 376-617 170-360 (361)
51 PF02518 HATPase_c: Histidine 99.8 2.8E-19 6.1E-24 155.5 10.0 109 487-616 1-110 (111)
52 COG4585 Signal transduction hi 99.8 5.5E-16 1.2E-20 164.5 29.3 195 374-616 169-365 (365)
53 PRK10547 chemotaxis protein Ch 99.7 1E-15 2.2E-20 169.8 20.5 147 449-619 343-526 (670)
54 COG4564 Signal transduction hi 99.6 3.7E-12 8E-17 123.4 36.9 202 373-618 248-449 (459)
55 COG3920 Signal transduction hi 99.6 2.6E-12 5.6E-17 124.5 26.8 196 375-619 18-218 (221)
56 COG0643 CheA Chemotaxis protei 99.5 5.7E-13 1.2E-17 148.6 22.0 147 448-618 389-575 (716)
57 PRK04184 DNA topoisomerase VI 99.5 5.2E-13 1.1E-17 143.1 15.0 146 486-655 31-185 (535)
58 COG2972 Predicted signal trans 99.5 1.6E-11 3.4E-16 133.8 25.0 182 382-618 265-454 (456)
59 smart00387 HATPase_c Histidine 99.4 1.5E-12 3.2E-17 112.2 12.8 110 487-617 1-111 (111)
60 KOG0519 Sensory transduction h 99.3 1.2E-12 2.6E-17 149.8 1.3 243 378-623 223-495 (786)
61 cd00075 HATPase_c Histidine ki 99.2 7.3E-11 1.6E-15 99.9 10.7 101 492-614 1-103 (103)
62 TIGR01052 top6b DNA topoisomer 99.2 1.2E-10 2.7E-15 123.6 14.4 111 485-616 22-142 (488)
63 PRK14868 DNA topoisomerase VI 99.2 1.9E-10 4.1E-15 125.8 15.7 130 468-619 22-162 (795)
64 TIGR01925 spIIAB anti-sigma F 99.2 2.3E-10 5E-15 103.3 12.2 97 488-614 36-136 (137)
65 PRK15429 formate hydrogenlyase 99.2 4.3E-09 9.3E-14 120.6 24.1 186 163-362 172-364 (686)
66 PRK03660 anti-sigma F factor; 99.1 6.4E-10 1.4E-14 101.7 12.9 102 488-619 36-141 (146)
67 PF00512 HisKA: His Kinase A ( 99.1 6.5E-10 1.4E-14 86.9 10.1 65 376-440 2-68 (68)
68 PRK14867 DNA topoisomerase VI 99.1 5.5E-10 1.2E-14 122.3 12.3 112 488-619 33-152 (659)
69 PRK11061 fused phosphoenolpyru 99.1 1.4E-08 2.9E-13 115.9 23.6 273 175-463 2-310 (748)
70 KOG0787 Dehydrogenase kinase [ 99.0 6.2E-08 1.4E-12 96.5 21.9 190 409-620 172-384 (414)
71 PRK04069 serine-protein kinase 99.0 4.4E-09 9.5E-14 97.4 12.9 108 488-623 39-150 (161)
72 TIGR01817 nifA Nif-specific re 98.8 2.3E-07 5E-12 103.4 20.2 158 175-346 4-163 (534)
73 TIGR01924 rsbW_low_gc serine-p 98.8 8.6E-08 1.9E-12 88.4 12.1 105 488-620 39-147 (159)
74 PF13492 GAF_3: GAF domain; PD 98.8 1.5E-07 3.2E-12 83.6 13.1 129 190-341 1-129 (129)
75 PF01590 GAF: GAF domain; Int 98.6 2.5E-07 5.5E-12 84.9 10.6 136 190-339 1-154 (154)
76 PF14501 HATPase_c_5: GHKL dom 98.6 9.9E-07 2.1E-11 74.6 12.0 95 488-615 2-100 (100)
77 PRK15429 formate hydrogenlyase 98.5 4.3E-06 9.4E-11 96.1 19.2 172 175-361 8-183 (686)
78 PRK05022 anaerobic nitric oxid 98.5 7.1E-06 1.5E-10 90.8 19.2 166 176-356 4-173 (509)
79 COG3605 PtsP Signal transducti 98.4 9.1E-06 2E-10 85.6 17.3 154 178-345 5-160 (756)
80 COG1389 DNA topoisomerase VI, 98.3 2.8E-06 6.1E-11 87.0 10.5 116 488-622 33-156 (538)
81 smart00065 GAF Domain present 98.3 1.5E-05 3.3E-10 71.1 13.8 144 190-347 1-147 (149)
82 smart00388 HisKA His Kinase A 98.3 4.5E-06 9.8E-11 64.0 8.8 63 376-438 2-64 (66)
83 PF13581 HATPase_c_2: Histidin 98.3 5.3E-06 1.1E-10 73.4 10.1 93 488-613 28-124 (125)
84 PF13185 GAF_2: GAF domain; PD 98.2 1.2E-05 2.6E-10 73.0 11.2 135 189-340 2-148 (148)
85 TIGR00585 mutl DNA mismatch re 98.0 4.6E-05 1E-09 78.8 10.8 97 490-613 21-125 (312)
86 COG2172 RsbW Anti-sigma regula 97.9 0.00013 2.7E-09 65.9 11.5 89 488-606 37-130 (146)
87 cd00082 HisKA Histidine Kinase 97.9 7.9E-05 1.7E-09 56.5 8.5 61 376-436 4-65 (65)
88 COG3604 FhlA Transcriptional r 97.7 0.0013 2.9E-08 69.2 15.8 174 175-363 33-212 (550)
89 COG2203 FhlA FOG: GAF domain [ 97.4 0.00024 5.1E-09 65.6 5.2 158 176-347 4-170 (175)
90 PRK00095 mutL DNA mismatch rep 97.3 0.00079 1.7E-08 76.0 9.8 85 491-602 22-113 (617)
91 PF13589 HATPase_c_3: Histidin 97.3 7.2E-05 1.6E-09 67.2 1.1 100 493-617 4-108 (137)
92 PRK13558 bacterio-opsin activa 97.3 0.0088 1.9E-07 69.1 18.1 144 177-340 289-436 (665)
93 PRK05559 DNA topoisomerase IV 96.2 0.011 2.3E-07 66.9 7.2 101 488-615 34-148 (631)
94 PRK05644 gyrB DNA gyrase subun 95.8 0.023 4.9E-07 64.3 7.8 81 488-591 34-130 (638)
95 PF11849 DUF3369: Domain of un 95.8 0.49 1.1E-05 44.3 15.5 151 163-349 9-172 (174)
96 COG0323 MutL DNA mismatch repa 95.8 0.0084 1.8E-07 67.6 4.1 60 491-572 23-82 (638)
97 PF07568 HisKA_2: Histidine ki 95.5 0.18 3.9E-06 39.9 9.7 72 383-463 2-73 (76)
98 TIGR02851 spore_V_T stage V sp 95.4 0.31 6.8E-06 45.6 12.3 126 188-339 51-179 (180)
99 PRK14083 HSP90 family protein; 95.2 0.01 2.2E-07 66.3 2.2 49 494-563 26-83 (601)
100 PRK05218 heat shock protein 90 94.8 0.082 1.8E-06 59.6 8.0 55 544-602 74-141 (613)
101 PTZ00272 heat shock protein 83 94.7 0.027 5.9E-07 63.7 3.8 20 543-562 72-91 (701)
102 TIGR01059 gyrB DNA gyrase, B s 94.5 0.21 4.4E-06 57.1 10.3 81 488-591 27-123 (654)
103 COG0326 HtpG Molecular chapero 94.3 0.064 1.4E-06 58.8 5.4 46 495-560 31-91 (623)
104 COG1956 GAF domain-containing 93.9 2.7 5.9E-05 37.9 13.8 127 190-338 32-159 (163)
105 PF04340 DUF484: Protein of un 93.6 0.66 1.4E-05 45.5 10.7 161 154-340 52-221 (225)
106 TIGR01055 parE_Gneg DNA topois 93.5 0.21 4.5E-06 56.4 7.9 79 491-592 30-124 (625)
107 COG5385 Uncharacterized protei 93.3 6 0.00013 35.7 18.7 192 379-614 18-212 (214)
108 COG5381 Uncharacterized protei 93.2 0.16 3.4E-06 44.3 4.8 49 492-560 64-112 (184)
109 PF10090 DUF2328: Uncharacteri 93.2 7.5 0.00016 36.5 18.3 169 393-602 3-174 (182)
110 smart00433 TOP2c Topoisomerase 92.9 0.12 2.5E-06 58.3 4.8 78 492-590 2-93 (594)
111 PRK14939 gyrB DNA gyrase subun 92.6 0.36 7.7E-06 55.3 8.0 48 490-558 36-84 (756)
112 PTZ00130 heat shock protein 90 92.5 0.13 2.9E-06 58.6 4.5 18 544-561 136-153 (814)
113 COG4251 Bacteriophytochrome (l 90.3 9.6 0.00021 42.1 15.2 80 184-263 141-224 (750)
114 KOG1979 DNA mismatch repair pr 89.4 0.49 1.1E-05 50.9 4.8 59 491-571 27-85 (694)
115 TIGR01058 parE_Gpos DNA topois 87.7 0.67 1.5E-05 52.4 4.9 48 488-558 31-81 (637)
116 KOG1978 DNA mismatch repair pr 87.5 0.64 1.4E-05 51.3 4.3 58 492-571 21-78 (672)
117 PF14689 SPOB_a: Sensor_kinase 86.3 3.9 8.4E-05 30.8 6.8 45 379-427 15-59 (62)
118 PRK10963 hypothetical protein; 85.4 38 0.00082 33.0 16.5 64 154-218 49-116 (223)
119 PLN03237 DNA topoisomerase 2; 84.1 1.4 3E-05 53.7 5.2 100 490-615 76-192 (1465)
120 PTZ00108 DNA topoisomerase 2-l 83.6 1.4 3E-05 53.7 5.0 103 490-616 56-176 (1388)
121 PHA02569 39 DNA topoisomerase 79.7 1.3 2.8E-05 49.9 2.7 83 490-594 44-145 (602)
122 KOG1977 DNA mismatch repair pr 79.4 2.3 5E-05 47.0 4.3 58 490-570 20-77 (1142)
123 PLN03128 DNA topoisomerase 2; 76.6 3.8 8.3E-05 49.4 5.5 102 490-615 51-167 (1135)
124 PF07730 HisKA_3: Histidine ki 75.5 27 0.00058 26.4 8.4 54 376-429 2-57 (68)
125 PF07694 5TM-5TMR_LYT: 5TMR of 75.1 24 0.00052 32.5 9.6 75 60-139 85-161 (169)
126 COG5393 Predicted membrane pro 73.8 42 0.00092 28.4 9.2 52 83-140 53-104 (131)
127 COG0187 GyrB Type IIA topoisom 73.2 1.6 3.4E-05 48.1 1.1 99 490-617 35-149 (635)
128 PRK10263 DNA translocase FtsK; 71.6 1.9E+02 0.004 35.8 17.4 16 58-73 77-92 (1355)
129 PF13042 DUF3902: Protein of u 70.8 56 0.0012 29.1 9.7 73 61-135 40-120 (161)
130 PF07851 TMPIT: TMPIT-like pro 68.6 1.2E+02 0.0027 31.3 13.3 69 365-435 23-91 (330)
131 PTZ00109 DNA gyrase subunit b; 66.7 1.3 2.7E-05 51.3 -1.3 51 488-559 126-177 (903)
132 PF06018 CodY: CodY GAF-like d 66.1 1.1E+02 0.0025 28.4 12.6 43 300-343 115-157 (177)
133 PF10066 DUF2304: Uncharacteri 63.3 81 0.0017 27.1 9.5 9 71-79 19-27 (115)
134 PF07536 HWE_HK: HWE histidine 63.3 32 0.0007 27.6 6.6 69 383-463 2-70 (83)
135 PF05663 DUF809: Protein of un 58.7 7.1 0.00015 31.5 2.0 32 4-35 17-48 (138)
136 COG3462 Predicted membrane pro 57.6 77 0.0017 26.5 7.7 68 82-149 7-79 (117)
137 COG1620 LldP L-lactate permeas 57.0 44 0.00095 36.5 8.1 76 57-143 183-259 (522)
138 PF02652 Lactate_perm: L-lacta 53.5 62 0.0013 36.0 8.9 78 52-140 176-253 (522)
139 PF06580 His_kinase: Histidine 53.2 1.1E+02 0.0025 24.2 8.9 60 384-465 11-70 (82)
140 PF04791 LMBR1: LMBR1-like mem 51.6 3.6E+02 0.0078 29.5 18.0 35 41-75 69-104 (471)
141 PF14248 DUF4345: Domain of un 48.7 1.4E+02 0.003 25.9 8.7 65 60-127 50-114 (124)
142 KOG0355 DNA topoisomerase type 47.6 23 0.00051 40.5 4.4 52 488-559 50-102 (842)
143 COG4587 ABC-type uncharacteriz 44.7 1.4E+02 0.0031 29.3 8.6 79 49-128 103-187 (268)
144 PF15449 Retinal: Retinal prot 43.6 5.4E+02 0.012 31.0 14.2 47 487-562 322-368 (1287)
145 PF10131 PTPS_related: 6-pyruv 43.2 1.8E+02 0.004 33.1 10.8 57 49-106 68-124 (616)
146 PF10966 DUF2768: Protein of u 43.1 45 0.00097 24.6 3.8 35 58-93 5-40 (58)
147 TIGR02787 codY_Gpos GTP-sensin 42.3 3.5E+02 0.0075 26.6 16.9 41 302-343 116-156 (251)
148 COG1480 Predicted membrane-ass 41.2 2.3E+02 0.0049 32.3 10.6 21 130-150 446-466 (700)
149 PF11177 DUF2964: Protein of u 41.0 1E+02 0.0023 23.1 5.5 29 82-110 5-33 (62)
150 PRK05415 hypothetical protein; 38.4 4.8E+02 0.01 27.2 12.1 83 121-204 102-196 (341)
151 PF14965 BRI3BP: Negative regu 38.3 2.2E+02 0.0047 26.3 8.3 35 139-173 142-176 (177)
152 PF06785 UPF0242: Uncharacteri 38.0 4.6E+02 0.01 26.9 17.6 83 354-436 138-225 (401)
153 PF03591 AzlC: AzlC protein; 37.7 3E+02 0.0065 24.6 9.9 48 60-110 3-50 (143)
154 PF07495 Y_Y_Y: Y_Y_Y domain; 37.7 39 0.00084 25.3 3.1 47 275-323 3-57 (66)
155 COG4465 CodY Pleiotropic trans 36.0 4E+02 0.0087 25.6 14.8 43 300-343 120-162 (261)
156 PF06103 DUF948: Bacterial pro 35.7 2.4E+02 0.0051 22.8 9.0 32 135-166 12-43 (90)
157 PF10011 DUF2254: Predicted me 35.0 5.7E+02 0.012 27.0 16.8 105 52-162 51-167 (371)
158 PF11694 DUF3290: Protein of u 34.9 2.6E+02 0.0057 25.3 8.4 45 58-102 21-65 (149)
159 PF05884 ZYG-11_interact: Inte 34.7 1.8E+02 0.0039 29.4 7.8 62 58-121 139-201 (299)
160 PRK04158 transcriptional repre 34.6 4.7E+02 0.01 26.0 18.2 43 300-343 117-159 (256)
161 PF10856 DUF2678: Protein of u 34.5 71 0.0015 27.2 4.2 26 63-88 69-96 (118)
162 KOG1734 Predicted RING-contain 33.7 1.3E+02 0.0028 29.7 6.4 77 11-93 105-189 (328)
163 PF10086 DUF2324: Putative mem 33.2 1.8E+02 0.0039 28.3 7.6 37 64-100 2-38 (223)
164 COG4097 Predicted ferric reduc 33.0 2.9E+02 0.0063 29.0 9.1 50 58-108 129-179 (438)
165 TIGR00920 2A060605 3-hydroxy-3 32.5 2E+02 0.0042 33.8 8.7 83 55-140 59-143 (886)
166 PF06305 DUF1049: Protein of u 32.3 2.1E+02 0.0045 21.6 6.4 14 158-171 50-63 (68)
167 PF05449 DUF754: Protein of un 32.1 2.1E+02 0.0045 23.0 6.4 45 61-107 4-48 (83)
168 COG3159 Uncharacterized protei 32.0 4.7E+02 0.01 25.1 12.6 65 154-218 50-118 (218)
169 PRK09695 glycolate transporter 31.3 1.6E+02 0.0034 33.2 7.7 71 58-139 197-267 (560)
170 COG3278 CcoN Cbb3-type cytochr 31.2 2.3E+02 0.005 29.7 8.1 87 5-104 93-181 (482)
171 PF11152 DUF2930: Protein of u 31.1 1.7E+02 0.0037 27.8 6.7 74 242-335 120-194 (195)
172 PTZ00271 hypoxanthine-guanine 30.9 1.1E+02 0.0024 29.5 5.7 14 641-654 115-128 (211)
173 COG2865 Predicted transcriptio 29.7 4.5E+02 0.0098 28.7 10.5 132 450-618 237-382 (467)
174 COG4377 Predicted membrane pro 29.6 1E+02 0.0022 29.0 4.8 37 61-97 15-51 (258)
175 KOG0020 Endoplasmic reticulum 27.8 53 0.0012 35.2 3.0 16 544-559 143-158 (785)
176 cd08766 Cyt_b561_ACYB-1_like P 27.3 4.6E+02 0.0099 23.5 9.8 72 61-135 51-136 (144)
177 PF12797 Fer4_2: 4Fe-4S bindin 27.1 34 0.00074 19.8 0.9 11 4-14 10-20 (22)
178 PF03729 DUF308: Short repeat 26.5 2.8E+02 0.006 20.7 6.5 30 78-107 16-45 (72)
179 TIGR00795 lctP L-lactate trans 26.3 2.3E+02 0.0049 31.7 7.9 69 61-140 191-259 (530)
180 PRK15423 hypoxanthine phosphor 26.1 1.5E+02 0.0033 27.6 5.6 14 641-654 89-102 (178)
181 PF07492 Trehalase_Ca-bi: Neut 26.0 47 0.001 20.8 1.4 11 543-553 14-24 (30)
182 TIGR00346 azlC 4-azaleucine re 25.9 5.5E+02 0.012 24.9 9.5 49 58-109 10-58 (221)
183 COG0813 DeoD Purine-nucleoside 25.7 74 0.0016 30.5 3.3 52 484-556 18-69 (236)
184 PF00556 LHC: Antenna complex 25.5 1E+02 0.0023 20.8 3.2 25 82-106 10-34 (40)
185 KOG3689 Cyclic nucleotide phos 25.4 7.6E+02 0.017 28.5 11.6 153 189-354 181-345 (707)
186 PF13813 MBOAT_2: Membrane bou 25.1 2.1E+02 0.0046 22.7 5.5 57 41-110 16-72 (83)
187 PF09726 Macoilin: Transmembra 24.3 2.4E+02 0.0052 32.7 7.7 20 488-507 612-631 (697)
188 PF09766 FimP: Fms-interacting 23.6 6.2E+02 0.014 26.6 10.2 61 342-403 94-154 (355)
189 PRK09162 hypoxanthine-guanine 23.2 2.1E+02 0.0045 26.8 6.0 14 641-654 94-107 (181)
190 PF13974 YebO: YebO-like prote 22.3 2.5E+02 0.0054 22.4 5.1 19 130-148 7-25 (80)
191 KOG2493 Na+/Pi symporter [Inor 22.2 3.5E+02 0.0076 29.4 7.8 38 72-110 184-221 (512)
192 COG4420 Predicted membrane pro 22.2 6.6E+02 0.014 23.6 11.1 23 101-123 75-97 (191)
193 COG1938 Archaeal enzymes of AT 22.2 2.3E+02 0.005 27.9 6.0 61 307-367 172-232 (244)
194 PF11382 DUF3186: Protein of u 21.9 3.9E+02 0.0085 27.4 8.1 47 340-386 29-75 (308)
195 TIGR00219 mreC rod shape-deter 21.9 5.3E+02 0.011 26.1 9.0 11 646-656 267-277 (283)
196 KOG3088 Secretory carrier memb 21.6 1E+02 0.0022 30.8 3.5 42 346-389 60-101 (313)
197 PF12725 DUF3810: Protein of u 21.5 1.5E+02 0.0032 30.7 4.9 24 55-78 25-48 (318)
198 COG0811 TolQ Biopolymer transp 21.3 6.1E+02 0.013 24.5 8.9 56 85-148 130-185 (216)
199 KOG0019 Molecular chaperone (H 21.1 68 0.0015 35.6 2.4 17 543-559 102-118 (656)
200 cd07955 Anticodon_Ia_Cys_like 21.1 2.6E+02 0.0055 22.2 5.2 19 374-392 28-46 (81)
201 TIGR01620 hyp_HI0043 conserved 21.1 8.8E+02 0.019 24.6 11.3 26 177-202 118-143 (289)
202 PF13633 N_methyl_3: Prokaryot 21.1 1E+02 0.0022 17.9 2.0 17 57-73 5-21 (22)
203 TIGR02921 PEP_integral PEP-CTE 20.7 3.3E+02 0.0071 30.3 7.2 87 62-164 159-245 (952)
204 PRK13922 rod shape-determining 20.7 8.6E+02 0.019 24.3 10.7 23 157-179 77-99 (276)
205 PRK10420 L-lactate permease; P 20.2 3.7E+02 0.0081 30.2 8.0 71 58-139 197-267 (551)
206 PRK00888 ftsB cell division pr 20.1 5.3E+02 0.012 21.7 9.2 15 160-174 38-52 (105)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-45 Score=386.91 Aligned_cols=391 Identities=22% Similarity=0.325 Sum_probs=312.9
Q ss_pred HHHHHHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccc
Q 005974 154 LKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI 233 (666)
Q Consensus 154 ~~~~a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~ 233 (666)
..+++.+++++.+..++++.+.+.++++++.+..+...++++..+.+++.++++. ++.+++++.++....+.+...
T Consensus 488 t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~~~~-~v~i~l~~~~~~~~~~~~~~~--- 563 (890)
T COG2205 488 TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASLLNQ-RVVILLPDDNGKLQPLGNPDG--- 563 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC-ceEEEEecCCcccccccCCcc---
Confidence 4667888999999999999999999999999999999999999999999999988 677778876554421111100
Q ss_pred ccCccccc-CChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEe
Q 005974 234 QIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML 312 (666)
Q Consensus 234 ~~~~~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~ 312 (666)
+.. +......++.++++- ..+....|....+..| +..++...||+.+
T Consensus 564 -----l~~~d~aaa~W~~~~~~~A-------------G~gTdTlpg~~~~~lP--------------l~~~~~~~gvlgv 611 (890)
T COG2205 564 -----LSADDRAAAQWAFENGKPA-------------GAGTDTLPGAKYLYLP--------------LKSGGKVLGVLGV 611 (890)
T ss_pred -----ccHHHHHHhhchhhCCCcc-------------ccCCCCCCCCceeEee--------------cccCCceEEEEEe
Confidence 111 111112222222210 0112223333444445 5556677899998
Q ss_pred eCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005974 313 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 392 (666)
Q Consensus 313 ~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~ 392 (666)
.........+++..++..+++|+|.|+++..+.++..+.+-+ .+..+.+++|++++||||||||+
T Consensus 612 ~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~---------------~e~E~lRsaLL~sISHDLRTPLt 676 (890)
T COG2205 612 EPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA---------------AERERLRSALLASISHDLRTPLT 676 (890)
T ss_pred cCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhccccCcHH
Confidence 888666789999999999999999999988877665443311 12234588999999999999999
Q ss_pred HHHHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcC
Q 005974 393 AIIALSSLLLET--DLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK 469 (666)
Q Consensus 393 ~I~~~~~~l~~~--~~~-~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~ 469 (666)
+|.|.++.|... .++ ++..+.+..|.+.++++..++++|+|++|+++|...++.++..+.+++.+++..++... .
T Consensus 677 ~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~veEvVg~Al~r~~k~~--~ 754 (890)
T COG2205 677 AIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRF--T 754 (890)
T ss_pred HHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchhhHHHHHHHHHHHhhhhc--C
Confidence 999999999864 344 44788999999999999999999999999999999999999999999999999888664 4
Q ss_pred CceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEe
Q 005974 470 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVN 548 (666)
Q Consensus 470 ~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 548 (666)
+..+.++++.+++. +..|...+.||+.||++||+||++++. +.+.+....++ +.|+|.
T Consensus 755 ~~~i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~--------------------v~~~V~ 813 (890)
T COG2205 755 GHKIVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVEREN--------------------VVFSVI 813 (890)
T ss_pred CceEEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecce--------------------EEEEEE
Confidence 44577777788775 778999999999999999999999865 77777766543 999999
Q ss_pred ecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 549 DSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 549 D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
|+|+|||+++.++||++||+..+... ..|+||||+||+.+++.|||+|++++. +++|++|+|.||....+
T Consensus 814 DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~~iv~ahgG~I~a~~~-~~gGa~f~~~LP~~~~~ 883 (890)
T COG2205 814 DEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICRGIVEAHGGTISAENN-PGGGAIFVFTLPVEEDP 883 (890)
T ss_pred eCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHHHHHHHcCCeEEEEEc-CCCceEEEEEeecCCCC
Confidence 99999999999999999999876554 669999999999999999999999998 89999999999987554
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=3.1e-39 Score=376.83 Aligned_cols=264 Identities=30% Similarity=0.473 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccce
Q 005974 370 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 449 (666)
Q Consensus 370 ~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 449 (666)
+++++.+.+|++.++||+||||++|.|+++++.+...+++++++++.+..+++++..++++++++++++.+...+...++
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~ 356 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPI 356 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeecc
Confidence 34455678999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCC
Q 005974 450 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 529 (666)
Q Consensus 450 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~ 529 (666)
++.++++++...+...+..+++.+.++.+++.|..+.+|+.++.||+.||++||+||+++|.+.+.+....++
T Consensus 357 ~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~------- 429 (779)
T PRK11091 357 DFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGD------- 429 (779)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccCC-------
Confidence 9999999999999999999999999998888887788999999999999999999999989888887765332
Q ss_pred CCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC-CCCCC-CCCccchHHHHHHHHHHhCCEEEEEecCCCCc
Q 005974 530 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-GSSCQ-TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKG 607 (666)
Q Consensus 530 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~-~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~G 607 (666)
.+.|+|+|||+|||++.++++|+||++++ ..... ..|+|+||++||++++.|||+|+++|. +|+|
T Consensus 430 ------------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~G 496 (779)
T PRK11091 430 ------------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGKG 496 (779)
T ss_pred ------------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCCe
Confidence 39999999999999999999999999985 32222 459999999999999999999999999 8999
Q ss_pred eEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 608 STVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 608 t~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
|+|++.+|++..+....... .......++.+|||||||+.+|.+++
T Consensus 497 t~f~i~lP~~~~~~~~~~~~--------~~~~~~~~~~~ILivdD~~~~~~~l~ 542 (779)
T PRK11091 497 SCFTLTIHAPAVAEEVEDAF--------DEDDMPLPALNILLVEDIELNVIVAR 542 (779)
T ss_pred EEEEEEEecccccccccccc--------ccccccccccceEEEcCCHHHHHHHH
Confidence 99999999976544221110 11122346789999999999998864
No 3
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=2e-39 Score=372.86 Aligned_cols=275 Identities=21% Similarity=0.301 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005974 358 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 437 (666)
Q Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 437 (666)
.++++++++++++++++++.+|++.++||+||||++|.++++.+.+...+++++++++.+.++++++..+++++++++++
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777888888999999999999999999999999999887778889999999999999999999999999999
Q ss_pred hCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEE
Q 005974 438 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 517 (666)
Q Consensus 438 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~ 517 (666)
+.+...+..+++++.+++++++..+.+.+..+++.+.+..+.+.+..+.+|+.++.||+.||++||+||++.|.+.+.+.
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~ 591 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVD 591 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99999999999999999999999999999999999998887666677889999999999999999999999998888776
Q ss_pred eecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEE
Q 005974 518 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHI 597 (666)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I 597 (666)
..... ..++.|+|+|+|+||+++.++++|+||++.+......+|+||||++||++++.|||+|
T Consensus 592 ~~~~~-----------------~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG~I 654 (894)
T PRK10618 592 QDESS-----------------PDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGGHL 654 (894)
T ss_pred EccCC-----------------CcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCCEE
Confidence 54321 1259999999999999999999999999876554445699999999999999999999
Q ss_pred EEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 598 WLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 598 ~v~S~~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
+++|. +|+||+|+|+||+...+.+.. ......+.|.+||||||++.+|.+++
T Consensus 655 ~v~S~-~g~GT~F~I~LPl~~~~~~~~-----------~~~~~~l~g~~vLlvdD~~~~r~~l~ 706 (894)
T PRK10618 655 TIKSR-EGLGTRYSIHLKMLAADPEVE-----------EEEEKLLDGVTVLLDITSEEVRKIVT 706 (894)
T ss_pred EEEEC-CCCcEEEEEEEEccCCccccc-----------ccccccCCCCEEEEEeCCHHHHHHHH
Confidence 99999 999999999999853322111 01123458899999999999998864
No 4
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=4.5e-37 Score=357.27 Aligned_cols=388 Identities=23% Similarity=0.336 Sum_probs=287.5
Q ss_pred HHHHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccccc
Q 005974 156 NRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI 235 (666)
Q Consensus 156 ~~a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 235 (666)
.++.+++++....++++++.+.|+++++.+..+.+.++++..+...+.+.++.. +++|++++++.........
T Consensus 493 ~l~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~~~~~~~-~~l~l~~~~g~~~~~~~~~------ 565 (895)
T PRK10490 493 NLTAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLASTFQAR-SQLLLPDDNGKLQPLTHDQ------ 565 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCC-EEEEEEcCCCccccccccc------
Confidence 345666666777788899999999999999999999999999999999999965 5688887655432211110
Q ss_pred CcccccCChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC
Q 005974 236 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 315 (666)
Q Consensus 236 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 315 (666)
...+.+......++..+.+.-. .....+......+|+ ..++..+|++.+...
T Consensus 566 -~~~~~~~~~~~w~~~~~~~~g~-------------~~~tl~~~~~~~lPl--------------~~~~~~~Gvl~l~~~ 617 (895)
T PRK10490 566 -GMTPWDDAIARWSFDKGQPAGA-------------GTDTLPGVPYQILPL--------------KSAQKTYGLLAVEPG 617 (895)
T ss_pred -cccchHHHHHHHHHhcCCcccc-------------CcCcCCCCceEEEEE--------------EECCEEEEEEEEecC
Confidence 0011111122222222221100 001122233445564 334456788887765
Q ss_pred C-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005974 316 G-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 394 (666)
Q Consensus 316 ~-~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I 394 (666)
. ...|+.++.++++.++.+++.++++..+..+..+. +...+..+.+++|++.++||+||||++|
T Consensus 618 ~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~---------------~l~~e~e~lr~~lla~isHELrtPLt~I 682 (895)
T PRK10490 618 NLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQA---------------RLASEREQLRNALLAALSHDLRTPLTVL 682 (895)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 4 45788999999999999999999776543221111 0111223446789999999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCce
Q 005974 395 IALSSLLLETD--LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 472 (666)
Q Consensus 395 ~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 472 (666)
.++++++..+. ...+..+.++.+.+.+.++..++++++++++.+.+...+...++++.+++++++..+......+++
T Consensus 683 ~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L~eli~~~l~~l~~~~~~~~i- 761 (895)
T PRK10490 683 FGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHPI- 761 (895)
T ss_pred HHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCHHHHHHHHHHHHHHHhcCCCE-
Confidence 99999886542 233445678889999999999999999999999998899999999999999999999877665554
Q ss_pred EEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecC
Q 005974 473 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 551 (666)
Q Consensus 473 ~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G 551 (666)
.++++.+.+ .+.+|+..+.|++.||++||+||+++| .+.+.+...++ .+.|+|+|+|
T Consensus 762 -~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~--------------------~v~I~V~D~G 819 (895)
T PRK10490 762 -NLSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE--------------------RLQLDVWDNG 819 (895)
T ss_pred -EEEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC--------------------EEEEEEEECC
Confidence 445555554 477899999999999999999999765 45555544332 3899999999
Q ss_pred CCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 005974 552 CGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 552 ~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
+||+++..+++|+||++.+... ...|+|+||++||++++.|||+|+++|. +++||+|++.||...
T Consensus 820 ~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Ivk~ive~hGG~I~v~s~-~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 820 PGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAICRAIVEVHGGTIWAENR-PEGGACFRVTLPLET 884 (895)
T ss_pred CCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHHHHHHHHcCCEEEEEEC-CCCeEEEEEEeECCC
Confidence 9999999999999999876432 2359999999999999999999999998 899999999999853
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.1e-36 Score=353.19 Aligned_cols=449 Identities=16% Similarity=0.192 Sum_probs=302.3
Q ss_pred HHHHHHHhhhhchhHHhHHHHHHHHHHhcccchh--HHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccC
Q 005974 159 DELDREMGLILTQEETGRHVRMLTHEIRSTLDRH--TILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 236 (666)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~--~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 236 (666)
.++++..+.++++.+..+.+..++..+....+.+ ..+...+..+.+.++.+.|++++.+.++.............
T Consensus 260 ~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 336 (828)
T PRK13837 260 LRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEAALGILAKFFDADSAALALVDVGGRARIWTFPGLTPD--- 336 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCCC---
Confidence 3344444555666777778888888887765554 89999999999999999999999887765544322110000
Q ss_pred ccccc-CChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC
Q 005974 237 SSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 315 (666)
Q Consensus 237 ~~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 315 (666)
...+. ....+..+..........+........ ......+....+++|+ ..++...+++.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~g~l~~~~~ 400 (828)
T PRK13837 337 PVWPDRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRGPALWACLAF--------------KSGDRIVALLGLGRQ 400 (828)
T ss_pred CCchHHHHHHHHHHhccCCceEEeecccchhhh--cccccCCcceEEEEEe--------------ccCCceEEEEEeccc
Confidence 00000 001111111122211211111111100 1111223334445553 233444566665443
Q ss_pred C-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005974 316 G-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 394 (666)
Q Consensus 316 ~-~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I 394 (666)
. ...|...++.+++.++.+++.++.+.+..++..+.++++ +++ +..++.++|++.++||+||||++|
T Consensus 401 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~l-------~~~-----~rl~~l~~~~~~iaHeLrtPL~~I 468 (828)
T PRK13837 401 RYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERRL-------EHA-----RRLEAVGTLASGIAHNFNNILGAI 468 (828)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-----HHHHHHHHHHHHhhHHhhhHHHHH
Confidence 3 345568899999999999999987766554443332222 111 123457789999999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceE
Q 005974 395 IALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSM 473 (666)
Q Consensus 395 ~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~ 473 (666)
.++++++.+. ..+++.+++++.+.++++++..++++++++++... ...+++++.++++++...++... .+++.+
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~~~~~~~l~~ll~~~~~~~~~~~-~~~i~l 543 (828)
T PRK13837 469 LGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGE----RNTKPFDLSELVTEIAPLLRVSL-PPGVEL 543 (828)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcEEcHHHHHHHHHHHHHHHc-cCCcEE
Confidence 9999988754 34557788999999999999999999999998543 34568999999999999887543 467788
Q ss_pred EEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCC
Q 005974 474 TLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 552 (666)
Q Consensus 474 ~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 552 (666)
.++.++.. ..+.+|+..+.|++.||++||+||+++ |.+.+.+........ ............++.|+|+|||+
T Consensus 544 ~~~~~~~~-~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~-----~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 544 DFDQDQEP-AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAP-----KVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred EEEeCCCC-ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccc-----cccccccCCCCCEEEEEEEECCC
Confidence 77765553 457889999999999999999999865 667776655421100 00000011123468999999999
Q ss_pred CCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCccc
Q 005974 553 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 632 (666)
Q Consensus 553 Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~ 632 (666)
||+++..+++|+||++++. +|+|+||++||++++.|||+|+++|. +|+||+|+|+||.....++... .
T Consensus 618 GI~~e~~~~iFe~F~~~~~-----~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~~~~------~ 685 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA-----GGTGLGLATVHGIVSAHAGYIDVQST-VGRGTRFDVYLPPSSKVPVAPQ------A 685 (828)
T ss_pred CCCHHHHHHhhCCcccCCC-----CCCcchHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEeCCCCCCCCcc------c
Confidence 9999999999999998764 58999999999999999999999998 8999999999998653322111 1
Q ss_pred CCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 633 GRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 633 ~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
...+...+..++.+|||||||+.++...+
T Consensus 686 ~~~~~~~~~~~~~~ILvVddd~~~~~~l~ 714 (828)
T PRK13837 686 FFGPGPLPRGRGETVLLVEPDDATLERYE 714 (828)
T ss_pred cCCCcccCCCCCCEEEEEcCCHHHHHHHH
Confidence 01112223346789999999999988753
No 6
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.5e-36 Score=354.43 Aligned_cols=241 Identities=31% Similarity=0.507 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 357 EQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 436 (666)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~ 436 (666)
+.++++++++++++++++++..|++.++||+||||++|.++++++.....+++.+++++.+.++++++..++++++++++
T Consensus 428 ~~e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~sr 507 (924)
T PRK10841 428 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSK 507 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777778888889999999999999999999999999998888889999999999999999999999999999
Q ss_pred hhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEE
Q 005974 437 LEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIA 516 (666)
Q Consensus 437 ~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~ 516 (666)
++.+...++.+++++.+++++++..+...+..+++.+.+.++++.+..+.+|+.++.||+.||++||+||++.|.+.+.+
T Consensus 508 ie~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v 587 (924)
T PRK10841 508 IESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHV 587 (924)
T ss_pred hcCCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999988888887789999999999999999999999999888877
Q ss_pred EeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCC-CCCccchHHHHHHHHHHhCC
Q 005974 517 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGG 595 (666)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG 595 (666)
...++ ++.|+|+|+|+||+++.++++|+||++.+..... ..|+||||++|+++++.|||
T Consensus 588 ~~~~~--------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG 647 (924)
T PRK10841 588 RVDGD--------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDG 647 (924)
T ss_pred EEeCC--------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCC
Confidence 65432 4999999999999999999999999987654333 35999999999999999999
Q ss_pred EEEEEecCCCCceEEEEEEEecC
Q 005974 596 HIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 596 ~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
+|+++|. +|+||+|+|.||+..
T Consensus 648 ~I~v~S~-~g~Gt~F~i~LP~~~ 669 (924)
T PRK10841 648 DISVDSE-PGMGSQFTIRIPLYG 669 (924)
T ss_pred EEEEEEc-CCCcEEEEEEEECCc
Confidence 9999999 899999999999853
No 7
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=6.7e-36 Score=357.97 Aligned_cols=270 Identities=32% Similarity=0.530 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 005974 363 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 442 (666)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 442 (666)
++++++++++++++..|++.++||+||||++|.++++++.+...+++++++++.+.++++++..++++++++++++.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~ 530 (968)
T TIGR02956 451 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHL 530 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44566677788899999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCC
Q 005974 443 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 522 (666)
Q Consensus 443 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~ 522 (666)
.+...++++.++++++...+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++.|.+.+.+...++.
T Consensus 531 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~ 610 (968)
T TIGR02956 531 SISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDS 610 (968)
T ss_pred eeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCC
Confidence 99999999999999999999999999999999999888887888999999999999999999999999888887654432
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 523 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
.+.|+|.|+|+|||++.++++|+||++.+. .....|+|+||++||++++.|||+|+++|.
T Consensus 611 -------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~ 670 (968)
T TIGR02956 611 -------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADG-RRRSGGTGLGLAISQRLVEAMDGELGVESE 670 (968)
T ss_pred -------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCC-CCCCCCccHHHHHHHHHHHHcCCEEEEEec
Confidence 189999999999999999999999999873 333469999999999999999999999998
Q ss_pred CCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 005974 603 GLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 662 (666)
Q Consensus 603 ~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~~ 662 (666)
+|+||+|+|.+|+...+...... ........+.+|||||||+.++.+++.
T Consensus 671 -~~~Gt~f~~~lp~~~~~~~~~~~---------~~~~~~~~~~~iLvvdd~~~~~~~l~~ 720 (968)
T TIGR02956 671 -LGVGSCFWFTLPLTRGKPAEDSA---------TLTVIDLPPQRVLLVEDNEVNQMVAQG 720 (968)
T ss_pred -CCCcEEEEEEEEcCCCCcccccc---------ccccccccccceEEEcCcHHHHHHHHH
Confidence 89999999999987544322110 012234567799999999999988643
No 8
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=2.4e-35 Score=351.43 Aligned_cols=242 Identities=30% Similarity=0.466 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 354 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 433 (666)
Q Consensus 354 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 433 (666)
++.++.+++++++++++++++.+..|++.++||+||||++|.+.++++.+...+++++++++.+..+++++..+++++++
T Consensus 376 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~ 455 (921)
T PRK15347 376 KVAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLD 455 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777888889999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEE
Q 005974 434 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 513 (666)
Q Consensus 434 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~ 513 (666)
+++++.+...+..+++++.++++++...+...+..+++.+.+..+++.|..+.+|+.++.|++.||++||+||+++|.|.
T Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~ 535 (921)
T PRK15347 456 FSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIR 535 (921)
T ss_pred HHHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEE
Confidence 99999999999999999999999999999999999999999988888887888999999999999999999999999888
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHh
Q 005974 514 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLM 593 (666)
Q Consensus 514 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~ 593 (666)
+.+...++ ++.|+|+|||+||+++.++++|+||++.+.. ..|+||||++|+++++.|
T Consensus 536 i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~~~~~~ 592 (921)
T PRK15347 536 LRVKRHEQ--------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIASSLAKMM 592 (921)
T ss_pred EEEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHHHHHHHHc
Confidence 87765433 3999999999999999999999999987643 358999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEecCC
Q 005974 594 GGHIWLDSEGLDKGSTVTFLVKLGIC 619 (666)
Q Consensus 594 gG~I~v~S~~~g~Gt~~~i~lP~~~~ 619 (666)
||+|+++|. +|+||+|+|.+|+...
T Consensus 593 gG~i~i~s~-~~~Gt~f~i~lp~~~~ 617 (921)
T PRK15347 593 GGELTLFST-PGVGSCFSLVLPLNEY 617 (921)
T ss_pred CCEEEEEec-CCCceEEEEEEECCCC
Confidence 999999999 8999999999998653
No 9
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=6.7e-35 Score=347.70 Aligned_cols=282 Identities=36% Similarity=0.570 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 354 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 433 (666)
Q Consensus 354 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 433 (666)
++..++.++..++++.+++++.+.+|++.++||+||||++|.++++.+.+...+++++++++.+.++++++..+++++++
T Consensus 271 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 350 (919)
T PRK11107 271 QMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILD 350 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777888888889999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEE
Q 005974 434 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 513 (666)
Q Consensus 434 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~ 513 (666)
+++++.+...+...++++.++++++...+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+++|.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~ 430 (919)
T PRK11107 351 FSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNID 430 (919)
T ss_pred HHHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEE
Confidence 99999999988999999999999999999999999999999999888887788999999999999999999999999887
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHHHHH
Q 005974 514 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNL 592 (666)
Q Consensus 514 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~ 592 (666)
+.+....... +..++.|+|.|+|+||+++.++++|+||++.+...+ ..+|+|+||++||++++.
T Consensus 431 i~v~~~~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~ 495 (919)
T PRK11107 431 ILVELRALSN---------------TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNE 495 (919)
T ss_pred EEEEEEecCC---------------CeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHH
Confidence 7776543221 223589999999999999999999999998765533 345999999999999999
Q ss_pred hCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 593 MGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 593 ~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
|||+|+++|. +|+||+|+|.+|+...+.+.. .+.+...+.|++||++||++.+|..++
T Consensus 496 ~gG~i~v~s~-~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~~~~~~~~l~ 553 (919)
T PRK11107 496 MGGDISFHSQ-PNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEPNSAAAQATL 553 (919)
T ss_pred hCCEEEEEec-CCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeCCHHHHHHHH
Confidence 9999999999 899999999999965433211 112234568899999999999998754
No 10
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=3.4e-35 Score=349.51 Aligned_cols=277 Identities=29% Similarity=0.487 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 352 RNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDV 431 (666)
Q Consensus 352 ~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 431 (666)
.+++.+...++++++.+.+++.+++..|++.++||+||||++|.++++++.+...+++.+++++.+.++++++..+++++
T Consensus 420 ~~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 499 (914)
T PRK11466 420 TAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDI 499 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677777788888999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHhhCCC--ccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC
Q 005974 432 LDLSRLEDGS--LELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE 509 (666)
Q Consensus 432 l~~~~~~~~~--~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~ 509 (666)
+++++.+.+. ..+..+++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+++
T Consensus 500 l~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~ 579 (914)
T PRK11466 500 LDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE 579 (914)
T ss_pred HHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998763 45667899999999999999999999999999999888888778899999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHH
Q 005974 510 GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRF 589 (666)
Q Consensus 510 g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~i 589 (666)
|.+.+.+...+. .+.|.|.|||+||+++..+++|+||++.+.. ..|+|+||++||++
T Consensus 580 g~I~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~l 636 (914)
T PRK11466 580 GSIVLRSRTDGE--------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTISSRL 636 (914)
T ss_pred CeEEEEEEEcCC--------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHHHHH
Confidence 988887765432 3899999999999999999999999986432 35899999999999
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 590 VNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 590 v~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
++.|||+|+++|. +|+||+|++.||+.....+... .+.......+++|||||||+.++.+++
T Consensus 637 ~~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~~~~~~---------~~~~~~~~~~~~vLivdD~~~~~~~l~ 698 (914)
T PRK11466 637 AQAMGGELSATST-PEVGSCFCLRLPLRVATAPVPK---------TVNQAVRLDGLRLLLIEDNPLTQRITA 698 (914)
T ss_pred HHHcCCEEEEEec-CCCCeEEEEEEEcccccccccc---------ccccccccCCcceEEEeCCHHHHHHHH
Confidence 9999999999998 8999999999998654322111 011122346789999999999998754
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=294.07 Aligned_cols=227 Identities=24% Similarity=0.454 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccee
Q 005974 373 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE--QRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 450 (666)
Q Consensus 373 ~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~--~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~ 450 (666)
.++++.|.+++|||+||||+++.++++.|.+....+. ...++..-.+..+||.++++||+.++|++.....+..+.+|
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~in 301 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWIN 301 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHH
Confidence 4457789999999999999999999999998765444 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCC
Q 005974 451 LQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRP 529 (666)
Q Consensus 451 l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~ 529 (666)
+..++..+++.+....++....--+..-+..+.++..|+..+.||+.|+++||+||+|+ |++++.+.....
T Consensus 302 ft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~-------- 373 (459)
T COG5002 302 FTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET-------- 373 (459)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc--------
Confidence 99999999999987754444331122235567789999999999999999999999997 567777665332
Q ss_pred CCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCC-CCccchHHHHHHHHHHhCCEEEEEecCCCCce
Q 005974 530 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 608 (666)
Q Consensus 530 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~-~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt 608 (666)
++.++|+|.|.|||.++.+++|++||+.+...++. +|+||||+|+|++|+.|||.||.+|+ .|+||
T Consensus 374 ------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gkgt 440 (459)
T COG5002 374 ------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGKGT 440 (459)
T ss_pred ------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCCce
Confidence 49999999999999999999999999987765444 59999999999999999999999999 99999
Q ss_pred EEEEEEEecCCC
Q 005974 609 TVTFLVKLGICN 620 (666)
Q Consensus 609 ~~~i~lP~~~~~ 620 (666)
+|+|+||....+
T Consensus 441 t~~ftLPy~~~~ 452 (459)
T COG5002 441 TFSFTLPYSGEA 452 (459)
T ss_pred EEEEEecccCcc
Confidence 999999986443
No 12
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=4.3e-33 Score=318.73 Aligned_cols=368 Identities=20% Similarity=0.241 Sum_probs=265.8
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCc
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 255 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 255 (666)
..+..+++.+.+..+.+++++.+++.+.+.++.+.+++|+.++++........++.+.. ....+.+.+.+......+..
T Consensus 305 ~~~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v 383 (679)
T TIGR02916 305 EEWLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPLA-QAFEPSDSAFCQFLQESGWI 383 (679)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCCc-ccCCCCCCHHHHHHHhCCCc
Confidence 34578899999999999999999999999999999999999887776665554443322 12344455555444444333
Q ss_pred eEccCCCcchhhhc---cccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-CCCccchhhhHHHHHH
Q 005974 256 MRLPYNCPLARIRL---LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVV 331 (666)
Q Consensus 256 ~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~v 331 (666)
..+.+....+.... .+..........+++|+.. ++...|++++..+ .++.++.++.++++.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL~~--------------~~~~~G~l~l~~~~~~~~~~~e~~~lL~~l 449 (679)
T TIGR02916 384 INLEEARSEPDHYSGLVLPEWLREIPNAWLIVPLIS--------------GEELVGFVVLARPRTAGEFNWEVRDLLKTA 449 (679)
T ss_pred ccchhhcCCcccccccccchhhhcCCCceEEEEecc--------------CCEEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 33222221111000 0011112234456677533 3344677766654 4668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH-HH
Q 005974 332 ADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQ 410 (666)
Q Consensus 332 a~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~-~~ 410 (666)
+.|++.++.+.+..++..+. +..++.+++.+.++||+|||++.+....+...+...++ ..
T Consensus 450 ~~q~a~~l~~~~~~~~l~~~-------------------~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~ 510 (679)
T TIGR02916 450 GRQAASYLAQMEASEALAEA-------------------RQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQ 510 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHH
Confidence 99999999766554332111 11223567888999999999999988888776554444 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHH
Q 005974 411 RVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEK 490 (666)
Q Consensus 411 ~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~ 490 (666)
++.++.+.+..+++.++++++.+.. ......++++.++++++.+..+.. ...+ .++++.+ ..+.+|+.
T Consensus 511 ~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ll~~~~~~~~~~--~~~~--~l~~~~~--~~v~~d~~ 578 (679)
T TIGR02916 511 DDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDLLRRAIASKRAQ--GPRP--EVSIDTD--LSVRADRE 578 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHHHHHHHHHhhhh--cCCc--eEEeCCC--ceEEECHH
Confidence 6788889999999999988875432 245566899999999998876532 2333 4444443 34778999
Q ss_pred HHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC-hhhhhccccc
Q 005974 491 RLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-IPLLFTKFAQ 568 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~-~~~if~~f~~ 568 (666)
.+.+++.||++||+||+++ +.+.+.+...++ .+.++|+|||+|||++. .+++|+||++
T Consensus 579 ~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~--------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~ 638 (679)
T TIGR02916 579 RLERVLGHLVQNALEATPGEGRVAIRVERECG--------------------AARIEIEDSGCGMSPAFIRERLFKPFDT 638 (679)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCC--------------------EEEEEEEEcCCCcChHHHHHhcCCCCCC
Confidence 9999999999999999875 567777665432 38999999999999999 9999999998
Q ss_pred cCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 569 SRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 569 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+++ .|+|+||++||++++.|||+|+++|. +|+||+|++++|
T Consensus 639 ~~~-----~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 639 TKG-----AGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred CCC-----CCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 764 48999999999999999999999998 899999999987
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=8.9e-34 Score=301.98 Aligned_cols=240 Identities=23% Similarity=0.382 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHHH
Q 005974 356 MEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-------PEQRVMIETVLKSSNLLTTLV 428 (666)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~-------~~~~~~l~~i~~~~~~l~~li 428 (666)
.+...+++++++++++..+.+++|++.++||+||||++|.+.++++.+...+ +..+++++.+.+.++++..++
T Consensus 131 ~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 210 (380)
T PRK09303 131 SDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLI 210 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555666666677899999999999999999999999999854322 336788899999999999999
Q ss_pred HHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC
Q 005974 429 DDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK 508 (666)
Q Consensus 429 ~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~ 508 (666)
++++++++.+.+...+..+++++.+++++++..+...+..+++.+.++++.+.|. +.+|+..+.|++.||++||+||++
T Consensus 211 ~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~d~~~l~qvl~NLl~NAik~~~ 289 (380)
T PRK09303 211 TDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS-VYADQERIRQVLLNLLDNAIKYTP 289 (380)
T ss_pred HHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCe-EEeCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999888888889999999999999999999999999999988777664 778999999999999999999998
Q ss_pred CC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHH
Q 005974 509 EG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR 587 (666)
Q Consensus 509 ~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k 587 (666)
+| .+.+.+....+. ++.|+|.|||+|||++..+++|+||++.+. .....|+||||++|+
T Consensus 290 ~~~~I~i~~~~~~~~-------------------~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~~ 349 (380)
T PRK09303 290 EGGTITLSMLHRTTQ-------------------KVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVCR 349 (380)
T ss_pred CCceEEEEEEecCCC-------------------EEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHHH
Confidence 64 555554333222 489999999999999999999999999876 333469999999999
Q ss_pred HHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 005974 588 RFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 588 ~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
++++.|||+|+++|. +++||+|+|++|+.
T Consensus 350 ~iv~~~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 350 RIVRVHYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred HHHHHcCCEEEEEec-CCCccEEEEEEecC
Confidence 999999999999998 89999999999974
No 14
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1.1e-32 Score=336.47 Aligned_cols=279 Identities=24% Similarity=0.382 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005974 360 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE-QRVMIETVLKSSNLLTTLVDDVLDLSRLE 438 (666)
Q Consensus 360 ~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 438 (666)
++++++++++.++++++++|++.++||+||||++|.++++++.....+++ ..+.++.+..+++++..++++++++++++
T Consensus 696 ~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~ 775 (1197)
T PRK09959 696 HALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIE 775 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555666778999999999999999999999999986554444 45788899999999999999999999999
Q ss_pred CCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEe
Q 005974 439 DGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASV 518 (666)
Q Consensus 439 ~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~ 518 (666)
.+...+..+++++.+++++++..+...+..+++.+.+..+...+..+.+|+.++.||+.||++||+||+++|.+.+.+..
T Consensus 776 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~ 855 (1197)
T PRK09959 776 SGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSL 855 (1197)
T ss_pred cCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 99888888999999999999999999998899988876543334457889999999999999999999998877776543
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEE
Q 005974 519 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIW 598 (666)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~ 598 (666)
...+ ++...+.|+|+|||+||+++.++++|+||++++... ..+|+||||++||++++.|||+|+
T Consensus 856 ~~~~---------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i~~~iv~~~gG~i~ 919 (1197)
T PRK09959 856 GHID---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMICKELIKNMQGDLS 919 (1197)
T ss_pred eeec---------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHHHHHHHHHcCCEEE
Confidence 3211 122358899999999999999999999999876532 335999999999999999999999
Q ss_pred EEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 599 LDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 599 v~S~~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
++|. +|+||+|++.||+........... .. ..+.+.....+||||||++.+|..++
T Consensus 920 v~s~-~~~Gt~f~i~lP~~~~~~~~~~~~----~~--~~~~~~~~~~~iLivdd~~~~~~~l~ 975 (1197)
T PRK09959 920 LESH-PGIGTTFTITIPVEISQQVATVEA----KA--EQPITLPEKLSILIADDHPTNRLLLK 975 (1197)
T ss_pred EEeC-CCCcEEEEEEEEccccchhccccc----cc--ccccccccCceEEEcCCCHHHHHHHH
Confidence 9999 899999999999865433221110 00 01112224579999999999998753
No 15
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-31 Score=277.96 Aligned_cols=387 Identities=23% Similarity=0.339 Sum_probs=263.3
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCccccc-CChhHHHHhcccCce
Q 005974 178 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSAQAM 256 (666)
Q Consensus 178 l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 256 (666)
...+.+..+...|..+.|-.--..+.+..+++.+++|+-+.- ... +...|- .-+.+-+++.+....
T Consensus 330 ~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~~~----~~v---------G~tP~~~~v~~Ll~wl~~~~~~ 396 (750)
T COG4251 330 HARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGGRW----HLV---------GETPPRPAVQRLLQWLAEREEG 396 (750)
T ss_pred HHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECCEE----EEe---------cCCCChHHHHHHHHHHhcCCcc
Confidence 334444556666777777777788899999999999875421 000 001011 112233444333333
Q ss_pred EccCCCcchhhhccccccCCCCceEEeecccccCC-c---------cccCCCCcCcccceE---EEEEeeC---------
Q 005974 257 RLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSN-F---------QINDWPELPAKSYAV---MVLMLPT--------- 314 (666)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~-~---------~~~~~~~l~~~~~~~---~vl~~~~--------- 314 (666)
.+-..++.....+.+..+..-..-.+.+|+-.... + +...|-.-+.+.|.. +....+.
T Consensus 397 ~vf~TdsL~q~yPda~~~~~vAsGlLAI~is~~~s~~llWFRpEvv~tV~WGG~P~k~~e~~~~~~rL~PRkSFe~WkE~ 476 (750)
T COG4251 397 DVFATDSLSQVYPDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIRLTPRKSFELWKET 476 (750)
T ss_pred cEEeeccccccCcchhhhccccceeEEEEeeccccceEEEEchHHheeeccCCCCCCccccCCCCcccCCcccHHHHHHH
Confidence 33333333322222333332222233444422111 1 011111111111111 1112221
Q ss_pred --CCCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005974 315 --DGGRKWRDHELELIDVVADQ-VAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLM 391 (666)
Q Consensus 315 --~~~~~~~~~e~~ll~~va~~-~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL 391 (666)
.....|++.|++....+-.- +.+.+.+ ..++.+.++++++.|...+.|.+.++|+||+||
T Consensus 477 vRl~s~PWs~~ei~~A~~LR~aiv~ivl~~-----------------aeela~l~r~lersn~el~~f~yv~sHdlqePl 539 (750)
T COG4251 477 VRLQSQPWSEVEIEAALELRKAIVGIVLRH-----------------AEELAQLRRELERSNAELRAFAYVASHDLQEPL 539 (750)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHH
Confidence 12357888888765554332 3333322 233444555666677777889999999999999
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhc
Q 005974 392 HAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASC 468 (666)
Q Consensus 392 ~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~ 468 (666)
+.|.+++++|.++ ..+++.++++..+.+.+.++..++++++.++++.....+ .++.|+.+++.++...+......
T Consensus 540 ~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~--l~~td~~~vv~~vl~~l~~ri~d 617 (750)
T COG4251 540 RQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAP--LQPTDVQKVVDKVLLELSQRIAD 617 (750)
T ss_pred HHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC--CCCcchHHHHHHHHHhccccccc
Confidence 9999999999864 678899999999999999999999999999998765444 44889999999999999988888
Q ss_pred CCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEe
Q 005974 469 KKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVN 548 (666)
Q Consensus 469 ~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 548 (666)
.++.+.+ .+ +|. +.+|+.++.|+++||+.||+||..++...+.+..+..+. .+.+.|.
T Consensus 618 tgaei~i--~~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed------------------~~t~sV~ 675 (750)
T COG4251 618 TGAEIRI--AP-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQED------------------EWTFSVR 675 (750)
T ss_pred ccceEEe--cc-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeeccCC------------------ceEEEec
Confidence 8887776 34 665 778999999999999999999998765445444333221 2899999
Q ss_pred ecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 549 DSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 549 D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
|||.||++...++||..|.+.+... +..|+|+||+|||+|++.|+|+||++|. +|.|+||.|++|.....
T Consensus 676 dng~Gi~~a~~~riF~iFqRl~s~~-~y~gtG~GL~I~kkI~e~H~G~i~vEs~-~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 676 DNGIGIDPAYFERIFVIFQRLHSRD-EYLGTGLGLAICKKIAERHQGRIWVEST-PGEGSTFYFTLPVGGEE 745 (750)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCchh-hhcCCCccHHHHHHHHHHhCceEEEeec-CCCceeEEEEeecCCcC
Confidence 9999999999999999998876544 3458999999999999999999999999 99999999999986543
No 16
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=7.9e-30 Score=277.27 Aligned_cols=219 Identities=25% Similarity=0.382 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
+.+|++.++||+||||++|.++++++.+... ++...++++.+.++++++..++++++++++.+.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 5579999999999999999999999986543 455678899999999999999999999999987766666678999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCCCCCCC
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 533 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~~~~~~ 533 (666)
++.+...+.... .+++.+.++.+++. .+.+|+.++.+++.||++||+||++++ .+.+.+...++
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~------------ 348 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ------------ 348 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC------------
Confidence 988887776654 67778887776554 367899999999999999999999865 45555443322
Q ss_pred ccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 005974 534 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 612 (666)
Q Consensus 534 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i 612 (666)
.+.|+|+|||+|||++..+++|+|||+.+...+ ...|+|+||++||++++.|||+|+++|. +|+||+|+|
T Consensus 349 --------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~f~i 419 (430)
T PRK11006 349 --------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTRFSF 419 (430)
T ss_pred --------EEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceEEEE
Confidence 389999999999999999999999998765433 3359999999999999999999999998 899999999
Q ss_pred EEEecC
Q 005974 613 LVKLGI 618 (666)
Q Consensus 613 ~lP~~~ 618 (666)
.+|...
T Consensus 420 ~lP~~~ 425 (430)
T PRK11006 420 VLPERL 425 (430)
T ss_pred EechHh
Confidence 999653
No 17
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.97 E-value=9.4e-29 Score=248.83 Aligned_cols=444 Identities=14% Similarity=0.104 Sum_probs=333.4
Q ss_pred HHHHHhh-----hHHHHHHHhhHHHHHHHHHhhc--CCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHH
Q 005974 50 VRYQYIS-----DILIALAYFSIPVELIYFVQKS--AFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIA 122 (666)
Q Consensus 50 ~~~~~~s-----d~~ia~ay~~ip~~l~~f~~~~--~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~ 122 (666)
-.+|..| +..-++|++..++..+|+.++- |+.-.+..+..++++ .|++.+|+.|+++.+ |+..++.++
T Consensus 93 ~GlhR~~mGg~ta~~c~iSti~~G~l~g~~~~~~~r~~R~~~p~~~~~v~~--~~E~lqM~iIL~~a~---~~~~av~lV 167 (557)
T COG3275 93 AGLHRYSMGGMTALSCAISTILEGLLGGLVHLYLIRRGRWDSPIVAALVGI--VAEMLQMLIILVIAR---PFADAVDLV 167 (557)
T ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHH--HHHHHHHHHHhhccC---cHHHHHHHH
Confidence 3566654 4556788889999999986543 322225557777777 999999999999887 777888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHH
Q 005974 123 KMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVEL 202 (666)
Q Consensus 123 k~~~a~~s~~~a~~l~~~ip~~l~~~s~e~~~~~~a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l 202 (666)
..+.+||.+.+.++...|+...++.+..++..+ +.+.....+.+.+.... +++..+ .+-+..+.+.+
T Consensus 168 s~i~iPMil~Nsvgaa~fm~i~~~~~~~~E~~~--a~~a~~aL~iA~~tlpl----------fr~gfn-~es~~~va~Ii 234 (557)
T COG3275 168 SNIAIPMILGNSVGAALFMRILLDRRAKFEKYA--AVQAKLALKIANKTLPL----------FRQGFN-EESLMKVAEII 234 (557)
T ss_pred hhccchhHhhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHH----------HHhhcC-hhhHHHHHHHH
Confidence 999999999999998888888887766544443 45555555555555555 333333 34567788899
Q ss_pred HhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEE
Q 005974 203 GRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAV 282 (666)
Q Consensus 203 ~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (666)
.+.+++++++| ++.+..+++.+....++..+.++..+....++++++.+....+.. .. |.+..++..+.+
T Consensus 235 ~~~~~~~AVai-----Td~e~ilA~vg~g~dhhi~g~~i~s~~t~~ai~~g~vv~~~~~e~---~~--csh~~c~l~s~l 304 (557)
T COG3275 235 YEELGAGAVAI-----TDREKLLAFVGIGDDHHIPGKPIISSLTRKAIKTGEVVYADGNEV---YE--CSHPTCKLGSAL 304 (557)
T ss_pred HHHhCCCeEEe-----cCHHHHHHhhcccccccCCCCeeccHHHHHHHhhCCEEEEccchh---hc--cCCCCCCcCCce
Confidence 99999999998 566666666666566677788888899999999999888776655 22 557888889999
Q ss_pred eecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 283 RVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVAL 362 (666)
Q Consensus 283 ~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l 362 (666)
..|+. .++.++|.+.++...++.++..+.++.+.++..+...++. .|.+++.
T Consensus 305 ViPL~--------------~~g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~--------------ge~e~q~ 356 (557)
T COG3275 305 VIPLR--------------GKGRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEA--------------GEAERQR 356 (557)
T ss_pred Eeecc--------------cCCceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHH--------------hHHHHHH
Confidence 99954 4455799999999999999999999988888887777632 2222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 005974 363 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 442 (666)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 442 (666)
+.+++..-++.+++-+ .|.+.|.||+|+.. |+++.+..++++-++..|.|..-...
T Consensus 357 ~ll~~AEik~LqaQvn-----PHFLFNaLNTIsa~-------------------IR~npdkAreLil~LS~yfR~NL~~~ 412 (557)
T COG3275 357 ELLKQAEIKALQAQVN-----PHFLFNALNTISAV-------------------IRRNPDKARELILYLSTYFRYNLENN 412 (557)
T ss_pred HHHHHHHHHHHHhccC-----hHHHHHHHHHHHHH-------------------hcCChHHHHHHHHHHHHHHHHHhcCC
Confidence 3334444455555656 99999999999988 88889999999999999988543221
Q ss_pred cccccceeHHHHHHHHHHHHHHHhhcC----CceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhcc-----CCCcEE
Q 005974 443 ELDNGPFNLQIVLREVIKLIKPVASCK----KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-----KEGYVS 513 (666)
Q Consensus 443 ~l~~~~~~l~~ll~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~-----~~g~v~ 513 (666)
..+.++|.+.++++-++++- ++. ++++.+++++.+. +......+++.|++||+||+ +.|.|.
T Consensus 413 --~~~~v~L~kEl~~v~AYl~I--EkARF~~rL~v~i~id~~l~-----~~~iP~filQPLVENAIKHG~~~~~~~g~V~ 483 (557)
T COG3275 413 --TQEIVTLSKELEHVNAYLSI--EKARFGDRLDVVIDIDEELR-----QVQIPSFILQPLVENAIKHGISQLKDTGRVT 483 (557)
T ss_pred --cceEeehHHHHHHHHHHHHH--HHHhcCCceEEEEecCHHHh-----hccCchhhhhHHHHHHHHhcccchhcCCceE
Confidence 14579999999999999873 333 3445554444332 22234568999999999997 357888
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHh
Q 005974 514 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLM 593 (666)
Q Consensus 514 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~ 593 (666)
+++...+.+ +.+.|+|||.|++|+. ..|+|+||++++++++.+
T Consensus 484 I~V~~~d~~--------------------l~i~VeDng~li~p~~-----------------~~g~giGL~nv~~RLk~l 526 (557)
T COG3275 484 ISVEKEDAD--------------------LRIEVEDNGGLIQPDE-----------------EDGTGIGLANVHKRLKLL 526 (557)
T ss_pred EEEEEeCCe--------------------EEEEEecCCCCcCCCC-----------------CCCCChHHHHHHHHHHHh
Confidence 888776654 9999999999999851 247899999999999999
Q ss_pred CC---EEEEEecCCCCceEEEEEEEecCCC
Q 005974 594 GG---HIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 594 gG---~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
.| -+.+++. +..||++.+.+|.+...
T Consensus 527 yG~~~gl~i~~~-~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 527 YGDDEGLHIESL-EQAGTRIIFRLPLQRTA 555 (557)
T ss_pred cCccccceEEec-cCCCcEEEEEecCcccc
Confidence 99 5999998 78899999999986543
No 18
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-29 Score=263.11 Aligned_cols=213 Identities=23% Similarity=0.389 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSL---LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 451 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~---l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 451 (666)
..+++.++++||+++||++|.++.+. +.+....++..+-+..|..-++||..+..+|..|++..... ..++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 56789999999999999999988764 55677888899999999999999999999999999965433 568999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCC
Q 005974 452 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWR 528 (666)
Q Consensus 452 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~ 528 (666)
.+.++++...+....+..+..+....++ .+.+|.+++.+|+||+-|||.||++... ++.+.+.....++.
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~------ 531 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQ------ 531 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCe------
Confidence 9999999999999988888888876643 3567999999999999999999999974 46677776655443
Q ss_pred CCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCce
Q 005974 529 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 608 (666)
Q Consensus 529 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt 608 (666)
+.|+|+|||+||+++...++|+|||++|+.. +|.||||+|+..|++.+||+|++.+. ++.|+
T Consensus 532 --------------v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~---~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~Ga 593 (603)
T COG4191 532 --------------VVLTVRDNGPGIAPEALPHLFEPFFTTKPVG---KGLGLGLAISQNIARDLGGSLEVANH-PEGGA 593 (603)
T ss_pred --------------EEEEEccCCCCCCHHHHHhhcCCccccCccc---CCcchhHHHHHHHHHHhCCeEEeecC-CCCce
Confidence 9999999999999999999999999999764 69999999999999999999999987 89999
Q ss_pred EEEEEEEe
Q 005974 609 TVTFLVKL 616 (666)
Q Consensus 609 ~~~i~lP~ 616 (666)
+|++.||.
T Consensus 594 ~F~i~L~~ 601 (603)
T COG4191 594 SFTIELRR 601 (603)
T ss_pred EEEEEeec
Confidence 99999984
No 19
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=4.2e-29 Score=271.26 Aligned_cols=234 Identities=21% Similarity=0.287 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 355 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 434 (666)
Q Consensus 355 L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 434 (666)
+.+....+.++.++.++..+.+.+|++.++||+||||+.|.+.++++.... +++. +.+.+..+++..++++++.+
T Consensus 191 l~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~-~~~~----~~i~~~~~~l~~li~~ll~~ 265 (433)
T PRK10604 191 LERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-AAES----QALNRDIGQLEALIEELLTY 265 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC-cHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777778899999999999999999999888886322 2222 23778899999999999999
Q ss_pred HHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEE
Q 005974 435 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 514 (666)
Q Consensus 435 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i 514 (666)
++++.+......+++++.+++++++..++.....+++.+.+ +.. +..+.+|+..+.+++.||++||+||++ +.+.+
T Consensus 266 ~rl~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I 341 (433)
T PRK10604 266 ARLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVRV 341 (433)
T ss_pred HhccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99998888888889999999999999988776666655554 333 233567999999999999999999995 66777
Q ss_pred EEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCC-CCCccchHHHHHHHHHHh
Q 005974 515 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLM 593 (666)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~ 593 (666)
.+...++ .+.|+|+|||+||+++..+++|+||++.+...++ .+|.|+||++||++++.|
T Consensus 342 ~~~~~~~--------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~ 401 (433)
T PRK10604 342 SLLLDGN--------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAM 401 (433)
T ss_pred EEEEECC--------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHC
Confidence 7765543 2899999999999999999999999997665433 358999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEecC
Q 005974 594 GGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 594 gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
||+++++|. +++||+|++.+|...
T Consensus 402 gG~i~v~s~-~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 402 GGSVNCDES-ELGGARFSFSWPVWH 425 (433)
T ss_pred CCEEEEEec-CCCeeEEEEEEeCCC
Confidence 999999998 899999999999864
No 20
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-29 Score=241.85 Aligned_cols=222 Identities=25% Similarity=0.338 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHH
Q 005974 374 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 453 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 453 (666)
++-..+.++++||+||||.+|.|..++|...-.++..+++.+.|.+.++|+..+++.+.-++- ..+....++|+++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 346678999999999999999999999998877777899999999999999999999866543 2355556899999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC---C--CcEEEEEEeecCCCCCCCC
Q 005974 454 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---E--GYVSIIASVAKPESLSDWR 528 (666)
Q Consensus 454 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~---~--g~v~i~~~~~~~~~~~~~~ 528 (666)
+++.+....+..+ ..++.+.-+.++++|. +.+|++++.|++.||+.||..+.. . |.++++.+....-
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 9999999888654 5678888889999998 778999999999999999999875 2 5555554322110
Q ss_pred CCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCce
Q 005974 529 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 608 (666)
Q Consensus 529 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt 608 (666)
+.........+.++|.|||+|+|++.++++|.||.+++. +|+||||+++++++..|||.|+++|. | +.|
T Consensus 278 ----~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~-----~GsGLGLala~~li~qH~G~Ie~~S~-P-g~T 346 (363)
T COG3852 278 ----TIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE-----GGTGLGLALAQNLIDQHGGKIEFDSW-P-GRT 346 (363)
T ss_pred ----EccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----CCccccHHHHHHHHHhcCCEEEEecc-C-Cce
Confidence 111111223367889999999999999999999998774 48999999999999999999999998 5 489
Q ss_pred EEEEEEEecC
Q 005974 609 TVTFLVKLGI 618 (666)
Q Consensus 609 ~~~i~lP~~~ 618 (666)
+|++.+|+..
T Consensus 347 ~FrvllP~~~ 356 (363)
T COG3852 347 VFRVLLPIRK 356 (363)
T ss_pred EEEEEeeccc
Confidence 9999999866
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=5.1e-27 Score=257.39 Aligned_cols=214 Identities=25% Similarity=0.423 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHH
Q 005974 374 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 452 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 452 (666)
...+++.+.++||+||||++|.++++++.+.. ..++.++.++.+.+..+++..++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34667999999999999999999999987643 345667888999999999999999999998843 3455689999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCC
Q 005974 453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 453 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
++++++...+...+..+++.+.++.+...+. +.+|+..+.+++.||++||+||+.+ +.+.+.+...++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~---------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLPE-IQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA---------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCce-EEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC----------
Confidence 9999999999999999999999988766554 6679999999999999999999764 556666654433
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
.+.|+|+|||+|||++..+++|++|++++. .|+|+||++||++++.|||+++++|. +|+||+|+
T Consensus 380 ----------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-----~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f~ 443 (457)
T PRK10364 380 ----------GVKISVTDSGKGIAADQLEAIFTPYFTTKA-----EGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATFT 443 (457)
T ss_pred ----------eEEEEEEECCCCCCHHHHHHHhCccccCCC-----CCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEEE
Confidence 299999999999999999999999997653 48899999999999999999999998 89999999
Q ss_pred EEEEecC
Q 005974 612 FLVKLGI 618 (666)
Q Consensus 612 i~lP~~~ 618 (666)
+.+|...
T Consensus 444 i~lP~~~ 450 (457)
T PRK10364 444 LWLPVNI 450 (457)
T ss_pred EEecCCC
Confidence 9999853
No 22
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=4.7e-29 Score=276.34 Aligned_cols=217 Identities=22% Similarity=0.255 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
...+++..++|++||||+.|.++++++.....+.......+.+.+....+...+..+.++.. ........++|+.++
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHHH
Confidence 35567788889999999999999999986543333334444444455555555555555432 222444568999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc---EEEEEEeecCCCCCCCCCCC
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY---VSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~---v~i~~~~~~~~~~~~~~~~~ 531 (666)
+++++..+...+..+++.+.+..+...+. +.+|+.++.||+.||++||+||++.+. ..+.+.....+
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~--------- 421 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLPA-ILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNG--------- 421 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCCe-eecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecC---------
Confidence 99999999888888999999988776664 678999999999999999999986652 22333322221
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
.++.|+|+|||+|||++.++++|+||++++... .+|+||||++||++++.|||+|+++|+ +|+||+|+
T Consensus 422 ---------~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G~~f~ 489 (494)
T TIGR02938 422 ---------DLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLSVAQEIVADHGGIIDLDDD-YSEGCRII 489 (494)
T ss_pred ---------CEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHHHHHHHHHHcCCEEEEEEC-CCCCEEEE
Confidence 148999999999999999999999999987653 469999999999999999999999999 99999999
Q ss_pred EEEEe
Q 005974 612 FLVKL 616 (666)
Q Consensus 612 i~lP~ 616 (666)
|+||+
T Consensus 490 i~lp~ 494 (494)
T TIGR02938 490 VEFRV 494 (494)
T ss_pred EEecC
Confidence 99995
No 23
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=2.2e-28 Score=268.05 Aligned_cols=235 Identities=18% Similarity=0.262 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 355 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 434 (666)
Q Consensus 355 L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 434 (666)
+.+..+.+.+..++.++..+..++|++.++||+||||+.|.+.++.+....... ..+....+.+..+++..+++++++.
T Consensus 245 l~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~-~~~~~~~~~~~i~ri~~~i~~ll~~ 323 (485)
T PRK10815 245 LTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS-VEQAEPIMLEQISRISQQIGYYLHR 323 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444454555555566778999999999999999999999987654211 2233445778889999999999999
Q ss_pred HHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEE
Q 005974 435 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 514 (666)
Q Consensus 435 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i 514 (666)
++.+.+......+.+++..++++++..+...+..+++.+.++.+++. .+.+|+..+.+++.||++||+||+.. .+.+
T Consensus 324 ~~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I 400 (485)
T PRK10815 324 ASMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEI 400 (485)
T ss_pred HHhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEE
Confidence 99888777778889999999999999999988889999988876543 36689999999999999999999975 4556
Q ss_pred EEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhC
Q 005974 515 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMG 594 (666)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~g 594 (666)
.+...++ .+.|+|+|+|+||+++.++++|+||++.+.. .+|+|+||++|+++++.||
T Consensus 401 ~~~~~~~--------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~---~~G~GLGL~Ivk~iv~~~g 457 (485)
T PRK10815 401 SARQTDE--------------------HLHIVVEDDGPGIPESKRELIFDRGQRADTL---RPGQGLGLSVAREITEQYE 457 (485)
T ss_pred EEEEeCC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCC---CCCcchhHHHHHHHHHHcC
Confidence 5544332 3899999999999999999999999986543 2589999999999999999
Q ss_pred CEEEEEecCCCCceEEEEEEEec
Q 005974 595 GHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 595 G~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
|+|+++|. +++||+|++.||.+
T Consensus 458 G~i~v~s~-~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 458 GKISAGDS-PLGGARMEVIFGRQ 479 (485)
T ss_pred CEEEEEEC-CCCEEEEEEEEcCC
Confidence 99999998 89999999999864
No 24
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.96 E-value=2.4e-27 Score=251.43 Aligned_cols=214 Identities=20% Similarity=0.246 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeH-H
Q 005974 374 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL-Q 452 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l-~ 452 (666)
+.+..|.+.++||+||||+.+.+.++++.+... ++ ...+.+..+++...+++++++++.+..........+++ .
T Consensus 135 ~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~ 209 (356)
T PRK10755 135 DQERLFTADVAHELRTPLAGIRLHLELLEKQHH-ID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLE 209 (356)
T ss_pred HHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-hh----HHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHH
Confidence 334568999999999999999999988765422 22 33455667889999999999999776555556667888 8
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCC
Q 005974 453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 453 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
+++..+...+......+++.+.+...+ .+..+.+|+..+.+++.||++||+||+++ +.+.+.+...++
T Consensus 210 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~---------- 278 (356)
T PRK10755 210 DVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG---------- 278 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC----------
Confidence 999998888888888888888774323 34457889999999999999999999975 456666543322
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCC-CceEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLD-KGSTV 610 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g-~Gt~~ 610 (666)
.+.++|+|||+||+++..+++|++|++.+. ..+|+|+||++|+++++.|||+++++|. ++ +||+|
T Consensus 279 ----------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i~~~i~~~~gg~i~i~s~-~~~~Gt~~ 344 (356)
T PRK10755 279 ----------GAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSIVSRITQLHHGQFFLQNR-QERSGTRA 344 (356)
T ss_pred ----------EEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHHHHHHHHHCCCEEEEEEC-CCCCeEEE
Confidence 389999999999999999999999997643 2358999999999999999999999998 77 99999
Q ss_pred EEEEEec
Q 005974 611 TFLVKLG 617 (666)
Q Consensus 611 ~i~lP~~ 617 (666)
++.+|..
T Consensus 345 ~i~~p~~ 351 (356)
T PRK10755 345 WVWLPKA 351 (356)
T ss_pred EEEecCC
Confidence 9999963
No 25
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.96 E-value=3.3e-27 Score=259.92 Aligned_cols=242 Identities=26% Similarity=0.355 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 432 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 432 (666)
+++.+..+++.+..+++++..+.+.++++.++||++|||+.+.+.++.+.+... +...+.+..+...++++..+++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777788899999999999999999999999876532 2234557778889999999999999
Q ss_pred HHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-Cc
Q 005974 433 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GY 511 (666)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~ 511 (666)
.+++.+.+...+..+++++.+++++++..++.....+++.+.++.++.. .+.+|+..+.|++.||+.||++|+++ |.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999988888888899999999999999999888888899888775543 35679999999999999999999976 45
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHHH
Q 005974 512 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFV 590 (666)
Q Consensus 512 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv 590 (666)
+.+.+...++ .+.|+|.|||+|||++.++++|+||++.+.... ...|+|+||++|++++
T Consensus 374 I~i~~~~~~~--------------------~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 374 LHISAEQRDK--------------------TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred EEEEEEEcCC--------------------EEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHH
Confidence 6666554332 389999999999999999999999998765433 2358999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEEEecC
Q 005974 591 NLMGGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 591 ~~~gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
+.|||+++++|. +++||+|++.||+..
T Consensus 434 ~~~~G~l~~~s~-~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 434 EAHNGRIIAAHS-PFGGVSITVELPLER 460 (466)
T ss_pred HHcCCEEEEEEC-CCCeEEEEEEccCCC
Confidence 999999999998 899999999999754
No 26
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.96 E-value=4.9e-27 Score=267.38 Aligned_cols=240 Identities=18% Similarity=0.276 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 432 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 432 (666)
+|+.+..+.++.+..++++..+...++.+.++||+|||++.|.+.++.+.....+++..++++.+.+.++++..+++++.
T Consensus 462 DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~ 541 (703)
T TIGR03785 462 DEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMS 541 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777888889999999999999999999999998877778888899999999999999999999
Q ss_pred HHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC-c
Q 005974 433 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-Y 511 (666)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~ 511 (666)
++++++........+++++.+++++++..++.....+++.+.+. .+ +..+.+|+..+.+++.||++||+||++++ .
T Consensus 542 ~~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~ 618 (703)
T TIGR03785 542 EATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ET-PLVMRGSPELIAQMLDKLVDNAREFSPEDGL 618 (703)
T ss_pred HHHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CC-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCe
Confidence 99998877767777899999999999999988877766666553 33 23578899999999999999999999764 4
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCC-CCccchHHHHHHHH
Q 005974 512 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFV 590 (666)
Q Consensus 512 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~-~g~GlGL~i~k~iv 590 (666)
|.+.+...++ .+.|+|+|+|+||+++..+++|++|++.+...... .|+||||++||+++
T Consensus 619 I~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv 678 (703)
T TIGR03785 619 IEVGLSQNKS--------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIA 678 (703)
T ss_pred EEEEEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHH
Confidence 5555443322 38999999999999999999999999876544333 48999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEEE
Q 005974 591 NLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 591 ~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+.|||+|++++...++|++|+++||
T Consensus 679 ~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 679 DFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHcCCEEEEEECCCCCeEEEEEEeC
Confidence 9999999999983247999999997
No 27
>PRK09835 sensor kinase CusS; Provisional
Probab=99.95 E-value=5.3e-26 Score=251.46 Aligned_cols=238 Identities=20% Similarity=0.358 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 354 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVL 432 (666)
Q Consensus 354 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll 432 (666)
++.+....+....+++++..+.+.+|.+.++||++||++.+.+..+.+.... ...+..+.+..+.+...++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666777777777889999999999999999999888776543 334556677788888999999999999
Q ss_pred HHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc-
Q 005974 433 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 511 (666)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~- 511 (666)
++++.+.+.......++++.++++++...++.....+++.+.+.. . +..+.+|+..+.+++.||++||+||+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999998887777788999999999999999988888888777642 2 334778999999999999999999997654
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHHH
Q 005974 512 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFV 590 (666)
Q Consensus 512 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv 590 (666)
+.+.+...++ .+.++|+|+|+||+++..+++|+||++.+.... ...|+|+||++|++++
T Consensus 397 I~i~~~~~~~--------------------~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~ 456 (482)
T PRK09835 397 ITVRCQEVDH--------------------QVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIV 456 (482)
T ss_pred EEEEEEEeCC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHH
Confidence 6666654433 389999999999999999999999999765443 2358999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEEEe
Q 005974 591 NLMGGHIWLDSEGLDKGSTVTFLVKL 616 (666)
Q Consensus 591 ~~~gG~I~v~S~~~g~Gt~~~i~lP~ 616 (666)
+.|||+|+++|. ++||+|++.+|.
T Consensus 457 ~~~~g~i~~~s~--~~g~~~~i~lP~ 480 (482)
T PRK09835 457 VAHKGTVAVTSD--ARGTRFVISLPR 480 (482)
T ss_pred HHCCCEEEEEEC--CCcEEEEEEeeC
Confidence 999999999997 469999999995
No 28
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.95 E-value=3.3e-26 Score=251.28 Aligned_cols=237 Identities=25% Similarity=0.410 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDV 431 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 431 (666)
+++.+....+....+++++..+...++...++||+||||+.+.+.++.+.... ..++..+.++.+....+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777778889999999999999999999998876543 34455678888888999999999999
Q ss_pred HHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-C
Q 005974 432 LDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-G 510 (666)
Q Consensus 432 l~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g 510 (666)
+++++.+........+++++.++++++.+.+...+..+++.+.++ .+ ..+.+|+..+.+++.|+++||+||+++ +
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999988888888899999999999999988888888776654 32 347789999999999999999999976 5
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHH
Q 005974 511 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRF 589 (666)
Q Consensus 511 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~i 589 (666)
.+.+.+...++ .+.|+|.|+|+|||++..+++|++||+++.... ...|+|+||++|+++
T Consensus 374 ~I~i~~~~~~~--------------------~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 374 TITVRIERRSD--------------------EVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred eEEEEEEecCC--------------------EEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHH
Confidence 66666654432 389999999999999999999999999876432 345899999999999
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 590 VNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 590 v~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+++|||++++++ +++||+|++.||
T Consensus 434 ~~~~~G~~~~~~--~~~G~~~~~~~P 457 (457)
T TIGR01386 434 MEAHGGRASAES--PDGKTRFILRFP 457 (457)
T ss_pred HHHCCCEEEEEe--CCCceEEEEecC
Confidence 999999999999 488999999987
No 29
>PRK13557 histidine kinase; Provisional
Probab=99.95 E-value=6.4e-26 Score=254.42 Aligned_cols=264 Identities=18% Similarity=0.242 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccce
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 449 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 449 (666)
....++..++|+++|||+.|.++++++.+. .......+.++.+.+.++++..++++++.+++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 356788999999999999999999988642 2345567889999999999999999999998743 3455678
Q ss_pred eHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCC
Q 005974 450 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWR 528 (666)
Q Consensus 450 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~ 528 (666)
++..+++.+...+... ..+++.+.+...+..+. +..|+..+.+++.||+.||++|++.+ .+.+.......... .
T Consensus 238 ~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---~ 312 (540)
T PRK13557 238 NLNGLVSGMGELAERT-LGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---D 312 (540)
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc---c
Confidence 9999999887776543 34667777766666554 66699999999999999999998764 34443332211100 0
Q ss_pred CCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCce
Q 005974 529 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 608 (666)
Q Consensus 529 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt 608 (666)
...+ .......++.|+|.|||+||+++..+++|++|++++.. ..|+|+||++||++++.|||+|+++|. +|+||
T Consensus 313 ~~~~--~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~---~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~G~ 386 (540)
T PRK13557 313 LAMY--HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE---GKGTGLGLSMVYGFAKQSGGAVRIYSE-VGEGT 386 (540)
T ss_pred cccc--cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---CCCCCccHHHHHHHHHHCCCEEEEEec-CCCce
Confidence 0000 00012235889999999999999999999999987643 258999999999999999999999998 89999
Q ss_pred EEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhh
Q 005974 609 TVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKS 660 (666)
Q Consensus 609 ~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~ 660 (666)
+|++.||.........+. ..........+++||+|||++..+..+
T Consensus 387 ~f~i~lP~~~~~~~~~~~-------~~~~~~~~~~~~~iliv~~~~~~~~~l 431 (540)
T PRK13557 387 TVRLYFPASDQAENPEQE-------PKARAIDRGGTETILIVDDRPDVAELA 431 (540)
T ss_pred EEEEEeeCCCCccCCCCC-------CCCcccccCCCceEEEEcCcHHHHHHH
Confidence 999999985543322111 111122345678999999999887664
No 30
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=8.2e-26 Score=248.47 Aligned_cols=238 Identities=22% Similarity=0.319 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 432 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 432 (666)
+++.+..+.+....+++++....+.+|.+.++||++|||+.+.+..+++....... ..+..+....+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777877888889999999999999999999888876543322 245668889999999999999
Q ss_pred HHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcE
Q 005974 433 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 512 (666)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v 512 (666)
++++.+.. .....+.+++..+++++++.+......+++.+.++..++ +..+.+|+..+.+++.||++||+||++ +.+
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i 373 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKI 373 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcE
Confidence 99997654 356677899999999999988877777888888764333 345778999999999999999999996 557
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCC-CCCccchHHHHHHHHH
Q 005974 513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVN 591 (666)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~ 591 (666)
.+.+...++ .+.++|+|||+||+++..+++|+||++.+....+ ..|+|+||++|+++++
T Consensus 374 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 374 EVAFSVDKD--------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQ 433 (461)
T ss_pred EEEEEEECC--------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHH
Confidence 776655433 3899999999999999999999999987654333 3589999999999999
Q ss_pred HhCCEEEEEecCCCCceEEEEEEEec
Q 005974 592 LMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 592 ~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
.|||+++++|. +++||+|++.+|+.
T Consensus 434 ~~~G~l~~~s~-~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 434 QHRGWVKAEDS-PLGGLRLTIWLPLY 458 (461)
T ss_pred HCCCEEEEEEC-CCCeEEEEEEeeCC
Confidence 99999999998 89999999999974
No 31
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=6.7e-26 Score=250.10 Aligned_cols=240 Identities=26% Similarity=0.389 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 432 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 432 (666)
+++.+..+.+++..+++++. +...++++.++||++||++.+.+.++.+.+....++..++++.+...++++..++++++
T Consensus 234 dEi~~l~~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 312 (475)
T PRK11100 234 SELRELAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLL 312 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444332 33567889999999999999999999988866667778899999999999999999999
Q ss_pred HHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-Cc
Q 005974 433 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GY 511 (666)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~ 511 (666)
.+++++..........+++.++++++...+......+++.+.++.+ +..+.+|...+.+++.||+.||+||+.+ +.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~ 389 (475)
T PRK11100 313 ELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGT 389 (475)
T ss_pred HHHhcccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999887776667789999999999999999888889988888664 3447779999999999999999999965 66
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHH
Q 005974 512 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN 591 (666)
Q Consensus 512 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~ 591 (666)
+.+.+...++ .+.++|+|+|.|||++.++++|++|++.+.......|+|+||++|+++++
T Consensus 390 i~i~~~~~~~--------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~ 449 (475)
T PRK11100 390 ITLSAEVDGE--------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVAR 449 (475)
T ss_pred EEEEEEEcCC--------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHH
Confidence 7776654433 38999999999999999999999999875533344689999999999999
Q ss_pred HhCCEEEEEecCCCCceEEEEEEEec
Q 005974 592 LMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 592 ~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
+|||+++++|. +++||+|.+.+|..
T Consensus 450 ~~~G~i~i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 450 LHGGEVTLRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred HCCCEEEEEEc-CCCeEEEEEEeeCC
Confidence 99999999998 88999999999974
No 32
>PRK10337 sensor protein QseC; Provisional
Probab=99.95 E-value=9.6e-26 Score=247.01 Aligned_cols=234 Identities=21% Similarity=0.305 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE-QRVMIETVLKSSNLLTTLVDDV 431 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~l 431 (666)
+++.+....+.+..+++++..+..++|++.++||+|||++.+.+..+.+.....+++ ...++..+...++++..+++++
T Consensus 214 ~Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l 293 (449)
T PRK10337 214 SEVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQL 293 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666777789999999999999999998888765444443 4578889999999999999999
Q ss_pred HHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC-
Q 005974 432 LDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG- 510 (666)
Q Consensus 432 l~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g- 510 (666)
+.+++.+........+++++.+++++++..+...+..+++.+.++.++.. ..+.+|+..+.+++.||++||+||++++
T Consensus 294 l~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~vl~Nli~NA~k~~~~~~ 372 (449)
T PRK10337 294 LTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHP-VIRTGQPLLLSLLVRNLLDNAIRYSPQGS 372 (449)
T ss_pred HHHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC-ceeecCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999887665667778999999999999998888889999998875443 3467899999999999999999999865
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHH
Q 005974 511 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFV 590 (666)
Q Consensus 511 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv 590 (666)
.+.+.... ..++|+|+|+|||++..+++|++|++.+.. ..+|+|+||++|++++
T Consensus 373 ~i~i~~~~------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~iv~~i~ 426 (449)
T PRK10337 373 VVDVTLNA------------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQ--EATGSGLGLSIVRRIA 426 (449)
T ss_pred eEEEEEEe------------------------eEEEEEECCCCCCHHHHHHhcccccCCCCC--CCCccchHHHHHHHHH
Confidence 44443321 368999999999999999999999986432 2358999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEE
Q 005974 591 NLMGGHIWLDSEGLDKGSTVTFLV 614 (666)
Q Consensus 591 ~~~gG~I~v~S~~~g~Gt~~~i~l 614 (666)
++|||+++++|. +++|++|++.+
T Consensus 427 ~~~gg~l~~~s~-~~~G~~~~i~~ 449 (449)
T PRK10337 427 KLHGMNVSFGNA-PEGGFEAKVSW 449 (449)
T ss_pred HHcCCEEEEEec-CCCeEEEEEeC
Confidence 999999999998 88999998864
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.95 E-value=5.2e-26 Score=238.46 Aligned_cols=216 Identities=29% Similarity=0.456 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHH
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 453 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 453 (666)
+.+|.+.++|+++|||+.|.++++.+... ..+++..++++.+.+..+++..+++++.++++.+.+.......++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 45689999999999999999999988754 4456677889999999999999999999999998877778888999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCC
Q 005974 454 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEF 532 (666)
Q Consensus 454 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~ 532 (666)
+++.+...+......+++.+.+..+. +..+.+|+..+.+++.||+.||++|+++ +.+.+.+...++
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~----------- 260 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG----------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC-----------
Confidence 99999999999988888999887732 3457889999999999999999999875 445555443322
Q ss_pred CccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 533 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 533 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
.+.+.|.|+|+||+++..+++|++|++.+.... ...|+|+||++|+++++.|||+++++|. +++||+|+
T Consensus 261 ---------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~~~ 330 (333)
T TIGR02966 261 ---------GAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGSTFS 330 (333)
T ss_pred ---------EEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeEEE
Confidence 289999999999999999999999997654332 3458999999999999999999999998 89999999
Q ss_pred EEE
Q 005974 612 FLV 614 (666)
Q Consensus 612 i~l 614 (666)
+.+
T Consensus 331 i~l 333 (333)
T TIGR02966 331 FIF 333 (333)
T ss_pred EEC
Confidence 875
No 34
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=8.8e-26 Score=246.29 Aligned_cols=229 Identities=20% Similarity=0.332 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 353 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 432 (666)
Q Consensus 353 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 432 (666)
+|+.+..+.+.+..+++++..+.+..|++.++||+||||+.+.+..+++.++ .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777788888899999999999999999999888776432 22344567888999999999999
Q ss_pred HHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcE
Q 005974 433 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 512 (666)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v 512 (666)
++.+.... ....++++.+++++++.... ..+..+.++.+.. +..+.+|+..+.+++.||++||+||+ .+.+
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i 351 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWI 351 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 99886533 34567899999999887654 3455566655444 33578899999999999999999998 4667
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHH
Q 005974 513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNL 592 (666)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~ 592 (666)
.+.....++ .+.|+|.|+|+||+++..+++|+||++.+... ...|+|+||++|+++++.
T Consensus 352 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-~~~g~GlGL~iv~~i~~~ 410 (435)
T PRK09467 352 KVSSGTEGK--------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-GSSGTGLGLAIVKRIVDQ 410 (435)
T ss_pred EEEEEecCC--------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-CCCCeehhHHHHHHHHHH
Confidence 776654432 38999999999999999999999999865443 235899999999999999
Q ss_pred hCCEEEEEecCCCCceEEEEEEEec
Q 005974 593 MGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 593 ~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
|||++.+++. +++|++|++.+|+.
T Consensus 411 ~~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 411 HNGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred CCCEEEEEEC-CCCcEEEEEEEeCC
Confidence 9999999998 89999999999974
No 35
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=1.2e-25 Score=237.62 Aligned_cols=217 Identities=22% Similarity=0.321 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
+.+.|++.++||+||||++|.++++++.+...+++.+++++.+.+.++++..++++++.+.+.. .....++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHHH
Confidence 3568999999999999999999999988776677788999999999999999999998765532 2346799999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhcc-C-CCcEEEEEEeecCCCCCCCCCCCC
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-K-EGYVSIIASVAKPESLSDWRPPEF 532 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~-~-~g~v~i~~~~~~~~~~~~~~~~~~ 532 (666)
++.+...+.... .+++.+.++.+++.+. +.+|+..+.+++.||++||++|+ + .+.+.+.........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888877544 4667777777666654 67799999999999999999997 3 344554442211100
Q ss_pred CccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 005974 533 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 612 (666)
Q Consensus 533 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i 612 (666)
.........+.+.|.|||+||+++..+++|+||++++. .|+|+||++||++++.|||+|+++|. +| ||+|++
T Consensus 272 -~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-----~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f~i 343 (348)
T PRK11073 272 -LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEFSV 343 (348)
T ss_pred -cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-----CCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEEEE
Confidence 00001112368999999999999999999999997653 48999999999999999999999998 66 599999
Q ss_pred EEEe
Q 005974 613 LVKL 616 (666)
Q Consensus 613 ~lP~ 616 (666)
.+|+
T Consensus 344 ~lP~ 347 (348)
T PRK11073 344 YLPI 347 (348)
T ss_pred EEec
Confidence 9996
No 36
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=4.3e-29 Score=283.96 Aligned_cols=628 Identities=36% Similarity=0.427 Sum_probs=484.5
Q ss_pred CCCCCccCC--CCCchhhHHHHHHhhhHHHHHHHhhHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHhhhhHHhHhhh-c
Q 005974 33 MESCDCIDT--QWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFP-YRWVLMQFGSFIILCGLTHFISLWT-F 108 (666)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~~~~~sd~~ia~ay~~ip~~l~~f~~~~~~~~-~~~~~~~f~~fi~~cg~~h~~~i~~-~ 108 (666)
..+|||++. .|+........++.+|++++.|||++|..++||..+...++ +.|....|..|+..|+.+|.+..|+ .
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 108 (786)
T KOG0519|consen 29 EDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSY 108 (786)
T ss_pred hhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcC
Confidence 368999974 66666556678899999999999999999999999998875 9999999999999999999999999 4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHH---HHHHHHHHhhhhchhHHhHHHHHHHHHH
Q 005974 109 TVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNR---ADELDREMGLILTQEETGRHVRMLTHEI 185 (666)
Q Consensus 109 ~~~~~~~~~~~~~~k~~~a~~s~~~a~~l~~~ip~~l~~~s~e~~~~~~---a~~l~~~~~~~~~~~~~~~~l~~lt~~i 185 (666)
..+....+...+..+..++.+++.++...+..+|..+..+.++...+.+ +.++.++......+.+.....+..++.+
T Consensus 109 ~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~ 188 (786)
T KOG0519|consen 109 TSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEI 188 (786)
T ss_pred Cccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeeh
Confidence 4444444555567888889999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc----cccCcccccCChhHHHHhcccCceEccCC
Q 005974 186 RSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ----IQIGSSVPINLPIVTDVFNSAQAMRLPYN 261 (666)
Q Consensus 186 ~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~l~~~ 261 (666)
+.+.+.+.+++.+..+..+.+..+.++.|.+.+........|.+..+ .......+..++....++++.........
T Consensus 189 ~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 268 (786)
T KOG0519|consen 189 RAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSAKSLL 268 (786)
T ss_pred hhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999888777777777765 22233445566666777766665555544
Q ss_pred Ccchhhhc-cccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHH
Q 005974 262 CPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS 340 (666)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~ 340 (666)
+....+-. ...........+.++++.+..++....+++.....++..++..+.+.++.|..++..+...++++++.++.
T Consensus 269 s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik 348 (786)
T KOG0519|consen 269 SLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIK 348 (786)
T ss_pred hhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceec
Confidence 44433322 12235566778889999888887777788999999999999999998999999999999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHH
Q 005974 341 --HAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLL-ETDLTPEQRVMIETV 417 (666)
Q Consensus 341 --~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~-~~~~~~~~~~~l~~i 417 (666)
++.-.++....++++.+.+..+..++++...+..++..+...+.|..++|.+.+.+....+. .....++..-.++..
T Consensus 349 ~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~ 428 (786)
T KOG0519|consen 349 FTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTV 428 (786)
T ss_pred ccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehh
Confidence 88888888888889999999998898888888888899999999999999999999888544 445556666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHH
Q 005974 418 LKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTIL 497 (666)
Q Consensus 418 ~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~ 497 (666)
.+..+.+..+++.-.+.++...+........+.+..++........+....+.+.+.+.+..+.+..+.+|+.+..|++.
T Consensus 429 ~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (786)
T KOG0519|consen 429 MRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIIL 508 (786)
T ss_pred hhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhh
Confidence 88888888999888888887766666666789999999999999998887888888888888888888889888999999
Q ss_pred HHHHHHhh--ccCCCcE-EEEEEeecCCCCC----CCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 498 NIVGNAVK--FTKEGYV-SIIASVAKPESLS----DWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 498 nLl~NAik--~~~~g~v-~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
+..+++.+ ++..++- .+.+......... +...+.+.......+.++.+.++++..|....+....+..+.+..
T Consensus 509 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 588 (786)
T KOG0519|consen 509 DFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLR 588 (786)
T ss_pred hhcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhccc
Confidence 99999998 6666532 3333332111111 112233333333333468899999999999888888777776655
Q ss_pred CCCCC-CCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCC---CCCCcCcccCCCCCCCCCCCCCc
Q 005974 571 GSSCQ-TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPG---SPIHPVALKGRASHGSADLTGPK 646 (666)
Q Consensus 571 ~~~~~-~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 646 (666)
....+ ..+.+++++.|.+..+.+.|.+++.....+..-.....+-........ ......+.....+.....++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~ 668 (786)
T KOG0519|consen 589 DLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPK 668 (786)
T ss_pred cchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCc
Confidence 44433 246789999999999999999988743112111111111111111100 00001111111122455679999
Q ss_pred eEEecCchhhhhhh
Q 005974 647 PLFRDNDQIASTKS 660 (666)
Q Consensus 647 iLvvDD~~~~r~v~ 660 (666)
|||||||+.||+|+
T Consensus 669 iLlvddn~vn~~Va 682 (786)
T KOG0519|consen 669 ILLVDDNPVNRKVA 682 (786)
T ss_pred eEEEecccchHHHH
Confidence 99999999999995
No 37
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-24 Score=221.22 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccce
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLET---DLT---PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 449 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~---~~~---~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 449 (666)
-++-++.++||+||||+-|...++.+... ..+ +..++..+.|.+++..+.++++++..|+|+. .+..+..
T Consensus 486 W~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~ 561 (712)
T COG5000 486 WGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKS 561 (712)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcc
Confidence 45667778999999999999999888752 222 3347889999999999999999999999976 5566689
Q ss_pred eHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-----Cc-EEEEEEeecCCC
Q 005974 450 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-----GY-VSIIASVAKPES 523 (666)
Q Consensus 450 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-----g~-v~i~~~~~~~~~ 523 (666)
||+++++++....+ .....+.+..+...+ |.+...|+..+.|++.||+.||.++..+ +. -.+.++....+
T Consensus 562 dL~~ll~e~~~L~e--~~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~- 637 (712)
T COG5000 562 DLRALLKEVSFLYE--IGNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDAD- 637 (712)
T ss_pred hHHHHHHHHHHHHh--ccCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCC-
Confidence 99999999999888 445678888887666 7777789999999999999999998632 11 12333332222
Q ss_pred CCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecC
Q 005974 524 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEG 603 (666)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~ 603 (666)
..+.+.|.|||.|+|.+...++|+||.+++. +||||||+|+|+|++.|||+|++...+
T Consensus 638 -----------------g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~-----KGTGLGLAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 638 -----------------GRIVVDVIDNGKGFPRENRHRALEPYVTTRE-----KGTGLGLAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred -----------------CeEEEEEecCCCCCChHHhhhhccCceeccc-----ccccccHHHHHHHHHhcCCeEEecCCC
Confidence 1399999999999999999999999998764 599999999999999999999999873
Q ss_pred CCCceEEEEEEEe
Q 005974 604 LDKGSTVTFLVKL 616 (666)
Q Consensus 604 ~g~Gt~~~i~lP~ 616 (666)
.-.|..+.+.||.
T Consensus 696 d~~GA~i~i~fp~ 708 (712)
T COG5000 696 DFDGAMIRIKFPL 708 (712)
T ss_pred CCCCcEEEEEccc
Confidence 3359999999997
No 38
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.94 E-value=3.1e-22 Score=225.25 Aligned_cols=357 Identities=15% Similarity=0.136 Sum_probs=242.0
Q ss_pred HHHHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccccc
Q 005974 156 NRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI 235 (666)
Q Consensus 156 ~~a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 235 (666)
++..+.+++...++++++.+..|+..++.+....+..+.+..+++++.+.++++.+.+.+.+.....-.........
T Consensus 200 ~l~~~~~~~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--- 276 (569)
T PRK10600 200 VLEQRVQEKTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQSD--- 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCCCc---
Confidence 34444555555677778888899999999999999999999999999999999999987765433321111111100
Q ss_pred CcccccCChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC
Q 005974 236 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 315 (666)
Q Consensus 236 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 315 (666)
....+..+..+ +.. ..........+..| +..+...+|++.....
T Consensus 277 ---~~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~--------------l~~~~~~~G~~~~~~~ 320 (569)
T PRK10600 277 ---MTCDDKGCQLC---------PRG----------VLPVGDRGTTLKWR--------------LSDKHGQYGILLATLP 320 (569)
T ss_pred ---cCccccccccc---------ccc----------CCCcCCCCceEEEE--------------eecCCcceEEEEEEcC
Confidence 00000000000 000 00000011233444 3344455777776666
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005974 316 GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAII 395 (666)
Q Consensus 316 ~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~ 395 (666)
.++.++.++..+++.++.+++.++...+... +.+++ ...+.+..+.+.++|.+..+|+.+.
T Consensus 321 ~~~~l~~~~~~ll~~l~~~l~~~l~~~~~~~-----------~~~~~--------~~~~er~~iarelhd~i~~~L~~l~ 381 (569)
T PRK10600 321 QGRHLSHDQQQLVDTLVEQLTATLALERQQE-----------RQQQL--------IVMEERATIARELHDSIAQSLSCMK 381 (569)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--------HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6678999999999999999998875432111 00000 1112245577778888888888887
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceE
Q 005974 396 ALSSLLLE--TDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSM 473 (666)
Q Consensus 396 ~~~~~l~~--~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~ 473 (666)
..++.++. ...+++.++.++.+.+.++++...+++++...+. .....++.+.+++++..+.... ++.+
T Consensus 382 ~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~i 451 (569)
T PRK10600 382 MQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFPV 451 (569)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCeE
Confidence 77765543 3345777889999999999999999999876653 2346788899998888877543 3445
Q ss_pred EEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCC
Q 005974 474 TLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCG 553 (666)
Q Consensus 474 ~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~G 553 (666)
.++.+.........+...+.+++.|+++||+||++++.+.+.+...++ .+.++|+|||+|
T Consensus 452 ~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~~--------------------~~~l~V~D~G~G 511 (569)
T PRK10600 452 KLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQN--------------------QVKLSVQDNGCG 511 (569)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCC--------------------EEEEEEEECCCC
Confidence 444432222212224556999999999999999988888777654432 389999999999
Q ss_pred CCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 005974 554 VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 554 i~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
|+++. ..++|+||++|+++++.|||+++++|. +|+||+|+++||...
T Consensus 512 i~~~~-----------------~~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 512 VPENA-----------------ERSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPEK 558 (569)
T ss_pred CCccc-----------------cCCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecCC
Confidence 99863 125699999999999999999999998 899999999999843
No 39
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=1.6e-24 Score=246.44 Aligned_cols=214 Identities=27% Similarity=0.451 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
+..++++.++||++|||+.|.++++++.....+++..+.++.+.+.++++..++++++++++.... ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 356799999999999999999999998877667788899999999999999999999999886532 3468999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCC
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFY 533 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~ 533 (666)
++++...+......+++.+.+..+++.+. +..|+..+.+++.|++.||++|+.. |.+.+.+...++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 99999999887777889888887776654 6679999999999999999999764 5566665443322
Q ss_pred ccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 005974 534 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 613 (666)
Q Consensus 534 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~ 613 (666)
.+.++|+|||+|||++..+++|+||+++++ .|+|+||++||+++++|||+|+++|. +|+||+|+++
T Consensus 533 --------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-----~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~i~ 598 (607)
T PRK11360 533 --------QVAVSIEDNGCGIDPELLKKIFDPFFTTKA-----KGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFTLY 598 (607)
T ss_pred --------EEEEEEEeCCCCCCHHHHhhhcCCceeCCC-----CCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEEEE
Confidence 289999999999999999999999997653 47899999999999999999999998 8999999999
Q ss_pred EEecC
Q 005974 614 VKLGI 618 (666)
Q Consensus 614 lP~~~ 618 (666)
+|+..
T Consensus 599 lp~~~ 603 (607)
T PRK11360 599 LPINP 603 (607)
T ss_pred ecCCC
Confidence 99843
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.93 E-value=2.6e-23 Score=227.94 Aligned_cols=248 Identities=16% Similarity=0.212 Sum_probs=178.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005974 320 WRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREA-EKAIHARNDFRAVMNHEMRTLMHAIIALS 398 (666)
Q Consensus 320 ~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~~~~~isHelr~PL~~I~~~~ 398 (666)
|.....+++..++.++.+++.......+.++.+++++++..+.++..+++ +...+.++++++.++||+++||++|.+..
T Consensus 245 ~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a 324 (495)
T PRK11644 245 WHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQA 324 (495)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44445566666666665555444444444444444443322222222222 22234577899999999999999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEe
Q 005974 399 SLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIM 477 (666)
Q Consensus 399 ~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~ 477 (666)
+.+++.. .+++.++..+.+.+.+.++.+.++++++..+ +...+.+++.+.++++.+.+... .+++.++++.
T Consensus 325 ~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr------~~~l~~~~L~~~l~~l~~~l~~~--~~~~~v~l~~ 396 (495)
T PRK11644 325 GIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLR------PRQLDDLTLEQAIRSLMREMELE--DRGIVSHLDW 396 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcccccCCHHHHHHHHHHHHHHh--hcCceEEEEe
Confidence 8887643 3445567788889999999999998876544 23345789999999999888744 3455555554
Q ss_pred CCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCC
Q 005974 478 APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 557 (666)
Q Consensus 478 ~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~ 557 (666)
+.+.+.....++..+.++++|+++||+||++++.+.+.....++ .+.++|+|||+|||++
T Consensus 397 ~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~--------------------~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 397 RIDESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDE--------------------RLMLVIEDDGSGLPPG 456 (495)
T ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--------------------EEEEEEEECCCCCCcC
Confidence 43333334557788999999999999999998887777765433 3899999999999876
Q ss_pred ChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 005974 558 DIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 616 (666)
Q Consensus 558 ~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~ 616 (666)
+ .|.|+||++||++++.|||+++++| ++||+|++++|.
T Consensus 457 ~------------------~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~I~LP~ 494 (495)
T PRK11644 457 S------------------GQQGFGLRGMRERVTALGGTLTISC---THGTRLSVSLPQ 494 (495)
T ss_pred C------------------CCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEEEEEeC
Confidence 3 2569999999999999999999998 579999999995
No 41
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.92 E-value=4.3e-23 Score=215.38 Aligned_cols=218 Identities=37% Similarity=0.583 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccccccceeHHH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS-LELDNGPFNLQI 453 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~-~~l~~~~~~l~~ 453 (666)
.+..+...++||++||++.+.+..+.+... ........+..+....+++..++++++++++.+... ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988855554 222267788888899999999999999999987652 333466788999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCC
Q 005974 454 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 533 (666)
Q Consensus 454 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~ 533 (666)
+++++...+......+++.+....+ .+..+.+|..++.+++.||++||+||++.+.+.+.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~------------ 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE------------ 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC------------
Confidence 9999999999887777887775543 23447779999999999999999999985666666655433
Q ss_pred ccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 005974 534 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 613 (666)
Q Consensus 534 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~ 613 (666)
++.++|.|+|+||+++..+++|+||++++...+ |+|+||++|+++++.|||++.++|. ++.||+|+++
T Consensus 259 --------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i~ 326 (336)
T COG0642 259 --------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---GTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTIR 326 (336)
T ss_pred --------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---CCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEEE
Confidence 399999999999999999999999999887642 8999999999999999999999998 7899999999
Q ss_pred EEecCC
Q 005974 614 VKLGIC 619 (666)
Q Consensus 614 lP~~~~ 619 (666)
+|....
T Consensus 327 lP~~~~ 332 (336)
T COG0642 327 LPLAPA 332 (336)
T ss_pred Eecccc
Confidence 998654
No 42
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-21 Score=197.45 Aligned_cols=341 Identities=16% Similarity=0.207 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc
Q 005974 153 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ 232 (666)
Q Consensus 153 ~~~~~a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~ 232 (666)
+.+.++++.+++.+.++++++.+..||..++.+.++...++.++.++..+....++..+.+.+.++++...+..++-...
T Consensus 223 lY~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~d 302 (574)
T COG3850 223 LYADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQWD 302 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCcc
Confidence 34667888888899999999999999999999999999999999999999999999999999887665544333321111
Q ss_pred cccCcccccCChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEe
Q 005974 233 IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML 312 (666)
Q Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~ 312 (666)
. ..+ + .......|. .+| +...+..++.+..
T Consensus 303 i-----------------------~~~-d----------------~~~~~~~~~---------~~~-l~~~g~~Lg~l~~ 332 (574)
T COG3850 303 I-----------------------SEG-D----------------QPSGLKWPQ---------EDP-LTQQGHLLGTLPW 332 (574)
T ss_pred e-----------------------ecC-C----------------CCcccchhh---------hcc-hhhhhhhheeeec
Confidence 0 000 0 000000010 011 1112222333322
Q ss_pred eCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005974 313 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 392 (666)
Q Consensus 313 ~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~ 392 (666)
.+.....+..+++.++.+++.++...+..+ + ++.-...++++..++.+++.|-+.|+
T Consensus 333 ----~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~-----------~--------~qQLllmEERatIAReLHDSiAQsLS 389 (574)
T COG3850 333 ----QRSLPEDDQQLLDTLVQQLGRTLALNKQQE-----------Q--------QQQLLLMEERATIARELHDSIAQSLS 389 (574)
T ss_pred ----cCCCCCchHHHHHHHHHHHHHHHHHHHHHH-----------H--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999999995442211 1 11112234477788888888889998
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcC
Q 005974 393 AIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK 469 (666)
Q Consensus 393 ~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~ 469 (666)
.+.-.+++|+.. ...++.++.+..+++..+....-+++++.-.|+ ..+.-++...++++++.+.. ..
T Consensus 390 ~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~AL~~~~~~f~~---qt 459 (574)
T COG3850 390 FLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPPALEQMLAEFSN---QT 459 (574)
T ss_pred HHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHHh---cc
Confidence 888888888753 456777899999999999999999999886664 33356778888888888864 35
Q ss_pred CceEEEEeCCCCCceEE--ecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEE
Q 005974 470 KLSMTLIMAPELPTYAV--GDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 547 (666)
Q Consensus 470 ~i~~~~~~~~~~~~~v~--~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 547 (666)
++.++++. .+|.... --..++.||+++.++||+||+.+.++.+.+....++ +++.|
T Consensus 460 g~~~~l~~--qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~g~--------------------~~~~V 517 (574)
T COG3850 460 GITVTLDY--QLPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ--------------------VTLTV 517 (574)
T ss_pred CCeEEEec--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecCCe--------------------EEEEE
Confidence 66665543 3332111 134678899999999999999999999998876543 99999
Q ss_pred eecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 005974 548 NDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 616 (666)
Q Consensus 548 ~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~ 616 (666)
+|||+|||+..- ..| ..||.|++++++.+||.+.+++. +|+||.+.+++|-
T Consensus 518 eDnG~Gi~~~~e----------------~~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~~ 568 (574)
T COG3850 518 EDNGVGIDEAAE----------------PSG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFPP 568 (574)
T ss_pred eeCCcCCCCccC----------------CCC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEecc
Confidence 999999998631 123 79999999999999999999999 9999999999983
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.91 E-value=3.2e-23 Score=244.16 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 005974 363 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 442 (666)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 442 (666)
++++++++++++++..|++.|+||+||||++|.++++++.+...+++...++.........+....+.+..
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 662 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQ--------- 662 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34455566667778999999999999999999999999887777777777766666555555555444432
Q ss_pred cccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC----CcEEEEEEe
Q 005974 443 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASV 518 (666)
Q Consensus 443 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~ 518 (666)
.....++++.++++++...+......+...+.+.++.+.+.....+...+.+|+.||++||+||+.+ |.+.+.+..
T Consensus 663 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 663 SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred cccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 2234578999999999999887766666666666655544434445667889999999999999743 456665544
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEE
Q 005974 519 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIW 598 (666)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~ 598 (666)
..++ ++.|+|+|||+|||++... ..++||||+|||++|+.|||+|+
T Consensus 743 ~~~~-------------------~v~i~V~D~G~GI~~~~~~---------------~~~~gLGLai~~~iv~~~gG~I~ 788 (807)
T PRK13560 743 QGDG-------------------MVNLCVADDGIGLPAGFDF---------------RAAETLGLQLVCALVKQLDGEIA 788 (807)
T ss_pred cCCC-------------------EEEEEEEeCCCcCCccccc---------------cccCCccHHHHHHHHHHcCCEEE
Confidence 3222 5999999999999987421 13678999999999999999999
Q ss_pred EEecCCCCceEEEEEEEec
Q 005974 599 LDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 599 v~S~~~g~Gt~~~i~lP~~ 617 (666)
++|. +||+|+|+||+.
T Consensus 789 v~S~---~Gt~F~i~lP~~ 804 (807)
T PRK13560 789 LDSR---GGARFNIRFPMS 804 (807)
T ss_pred EEcC---CceEEEEEecCC
Confidence 9985 699999999974
No 44
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-21 Score=196.28 Aligned_cols=215 Identities=19% Similarity=0.281 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLL---ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 451 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 451 (666)
..++-+..++||++.||++++.|+-... ++..++....+++.|..-++|+..+++.+..|+|-.+++-+ ..|++|
T Consensus 450 vVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L 527 (673)
T COG4192 450 VVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRL 527 (673)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccH
Confidence 3456778899999999999998865443 45566777899999999999999999999999997766543 459999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCC
Q 005974 452 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 452 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
++.++.+.+.++...+.+.+.+.. +.+ ..+|.||...+.||+.|++-||++++......|.+.....+
T Consensus 528 ~~~v~~AweLl~~khk~rQ~~Li~--ptD-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~--------- 595 (673)
T COG4192 528 NSVVEQAWELLQTKHKRRQIKLIN--PTD-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTE--------- 595 (673)
T ss_pred HHHHHHHHHHHHhhhhhccccccC--Ccc-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCc---------
Confidence 999999999999776666555543 333 44699999999999999999999988654344444333221
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
...+++.|.|||+|.|-+..+++|.||.++|.. |.|+||+||..++++|.|++.+.|. ..+|..+.
T Consensus 596 --------~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v-----gLGlGLSIsqSlmeqmqG~l~lASt-Lt~nA~Vi 661 (673)
T COG4192 596 --------QEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV-----GLGLGLSISQSLMEQMQGRLALAST-LTKNAMVI 661 (673)
T ss_pred --------ccceEEEEecCCCCCchhHHHHhcCCccccccc-----ccccchhHHHHHHHHhcCcchHhhh-cccCcEEE
Confidence 113899999999999999999999999987754 7999999999999999999999999 89999888
Q ss_pred EEEEec
Q 005974 612 FLVKLG 617 (666)
Q Consensus 612 i~lP~~ 617 (666)
+.+...
T Consensus 662 L~f~v~ 667 (673)
T COG4192 662 LEFQVD 667 (673)
T ss_pred EEEeec
Confidence 777653
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-18 Score=179.76 Aligned_cols=195 Identities=21% Similarity=0.250 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHH
Q 005974 378 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 457 (666)
Q Consensus 378 ~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~ 457 (666)
+-++..+||..|-|++|.|++++-.- .+..+.|.+.++.-...++.+..-.+ .--+..++
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~y-------d~a~~~I~~~~~~qq~~~~~l~~~i~-----------~~~lAg~L-- 394 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGEY-------DDALDYIQQESEEQQELIDSLSEKIK-----------DPVLAGFL-- 394 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHhhhhhhHHHHHHhcc-----------cHHHHHHH--
Confidence 45666799999999999999887332 23333444444444444444432111 11122332
Q ss_pred HHHHHHHHhhcCCceEEEEeCCCCCce-EEecHHHHHHHHHHHHHHHhhccC---C-CcEEEEEEeecCCCCCCCCCCCC
Q 005974 458 VIKLIKPVASCKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTK---E-GYVSIIASVAKPESLSDWRPPEF 532 (666)
Q Consensus 458 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~d~~~l~~vl~nLl~NAik~~~---~-g~v~i~~~~~~~~~~~~~~~~~~ 532 (666)
---...+++.|+.+.++....+|.. -.-+...+--++-||++||+++.. + +.+.+.+...++
T Consensus 395 --lgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~----------- 461 (537)
T COG3290 395 --LGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGD----------- 461 (537)
T ss_pred --HhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCC-----------
Confidence 2222236678888888776665531 123788899999999999999875 2 344444444333
Q ss_pred CccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 005974 533 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 612 (666)
Q Consensus 533 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i 612 (666)
.+.++|.|||||||++..+++|+..++++.. .+.|+||++||+.|+.+||.|+++|+ .+.||+|++
T Consensus 462 ---------~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~i 527 (537)
T COG3290 462 ---------ELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----GGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFSI 527 (537)
T ss_pred ---------EEEEEEeCCCCCCChHHHHHHHhcCccccCC----CCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEEE
Confidence 3999999999999999999999999988862 47899999999999999999999998 899999999
Q ss_pred EEEecCC
Q 005974 613 LVKLGIC 619 (666)
Q Consensus 613 ~lP~~~~ 619 (666)
.+|....
T Consensus 528 ~iP~~~~ 534 (537)
T COG3290 528 YIPKVKE 534 (537)
T ss_pred ECCCCcc
Confidence 9998644
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.87 E-value=5e-21 Score=214.97 Aligned_cols=194 Identities=20% Similarity=0.286 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHH
Q 005974 377 NDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETV-LKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 455 (666)
Q Consensus 377 ~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i-~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll 455 (666)
.++++.++||++|||++|.+++++... ++..+++..+ .+...++..+++++.+ ++ +...
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~- 399 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTANNYQEEIGSLLGKIKS--------------PV-IAGF- 399 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHhccC--------------HH-HHHH-
Confidence 345567899999999999999876432 2222332222 2222223333222210 11 1111
Q ss_pred HHHHHHHHHHhhcCCceEEEEeCCCCCceE-EecHHHHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCCCCC
Q 005974 456 REVIKLIKPVASCKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 456 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~d~~~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
+......+..+++.+.+..+...+... ..+...+.+++.||++||+||+. .+.+.+.+...++
T Consensus 400 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~---------- 466 (542)
T PRK11086 400 ---LLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNG---------- 466 (542)
T ss_pred ---HHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCC----------
Confidence 111222355678888887665555322 12345799999999999999964 3556665544332
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
.+.++|+|||+||+++..+++|+||++++. .|+|+||++||++++.|||+|+++|. +|+||+|+
T Consensus 467 ----------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-----~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~f~ 530 (542)
T PRK11086 467 ----------WLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-----SNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQFF 530 (542)
T ss_pred ----------EEEEEEEECCCCCCHHHHHHHHhCCCccCC-----CCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEEEE
Confidence 389999999999999999999999997653 48899999999999999999999998 89999999
Q ss_pred EEEEecCC
Q 005974 612 FLVKLGIC 619 (666)
Q Consensus 612 i~lP~~~~ 619 (666)
+.+|....
T Consensus 531 i~lP~~~~ 538 (542)
T PRK11086 531 VQIPWDGE 538 (542)
T ss_pred EEEeCCCC
Confidence 99998543
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=1.5e-20 Score=211.10 Aligned_cols=193 Identities=21% Similarity=0.250 Sum_probs=140.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHH
Q 005974 380 RAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVI 459 (666)
Q Consensus 380 ~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~ 459 (666)
++.++||++|||++|.+++++- +..+.++.+.+.++++..+++.+...... ..+...+.
T Consensus 342 l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~l~ 400 (545)
T PRK15053 342 LRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGLLF 400 (545)
T ss_pred HHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHHHH
Confidence 4457999999999999987652 22346667777788888888777654320 11111121
Q ss_pred HHHHHHhhcCCceEEEEeCCCCC-ceEEecHHHHHHHHHHHHHHHhhcc---CC--CcEEEEEEeecCCCCCCCCCCCCC
Q 005974 460 KLIKPVASCKKLSMTLIMAPELP-TYAVGDEKRLMQTILNIVGNAVKFT---KE--GYVSIIASVAKPESLSDWRPPEFY 533 (666)
Q Consensus 460 ~~~~~~~~~~~i~~~~~~~~~~~-~~v~~d~~~l~~vl~nLl~NAik~~---~~--g~v~i~~~~~~~~~~~~~~~~~~~ 533 (666)
.. ...+.++++.+.+..+.... .....|+..+.+++.||++||++|+ ++ +.+.+.+...++
T Consensus 401 ~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~------------ 467 (545)
T PRK15053 401 GK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGD------------ 467 (545)
T ss_pred HH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCC------------
Confidence 11 22345677777765443321 1134599999999999999999995 33 334444433222
Q ss_pred ccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 005974 534 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 613 (666)
Q Consensus 534 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~ 613 (666)
.+.++|+|||+|||++..+++|++||+++... ..|+|+||++||++++.|||+|+++|. +|.||+|++.
T Consensus 468 --------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f~i~ 536 (545)
T PRK15053 468 --------DVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLFSIF 536 (545)
T ss_pred --------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEEEEE
Confidence 38999999999999999999999999876432 237899999999999999999999998 8999999999
Q ss_pred EEec
Q 005974 614 VKLG 617 (666)
Q Consensus 614 lP~~ 617 (666)
||..
T Consensus 537 lP~~ 540 (545)
T PRK15053 537 IPKV 540 (545)
T ss_pred ECCC
Confidence 9974
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.85 E-value=3.4e-17 Score=184.90 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=135.7
Q ss_pred HHHHHhhHHHHHHHHH----HHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHH
Q 005974 383 MNHEMRTLMHAIIALS----SLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 456 (666)
Q Consensus 383 isHelr~PL~~I~~~~----~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~ 456 (666)
++||+++|+..+...+ +++... ...++..+.+..+.+...++...+.+++...+ ....++++.+.++
T Consensus 367 la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~ 439 (565)
T PRK10935 367 IARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGSALE 439 (565)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHHHHH
Confidence 5666666666555443 334432 22455566777777777777777777765433 3445789999999
Q ss_pred HHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccC
Q 005974 457 EVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVS 536 (666)
Q Consensus 457 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 536 (666)
+++..++.. .++.+.++.+.+.......+..++.|++.|++.||+||++.+.+.+......++
T Consensus 440 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~-------------- 502 (565)
T PRK10935 440 EMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPDG-------------- 502 (565)
T ss_pred HHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC--------------
Confidence 999988754 333444433222222223345679999999999999999988887776654222
Q ss_pred CCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 005974 537 TDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 616 (666)
Q Consensus 537 ~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~ 616 (666)
++.++|.|||+|||++. ..|+|+||++|+++++.|||+|+++|. +|+||+|++.+|.
T Consensus 503 -----~~~i~V~D~G~Gi~~~~-----------------~~~~glGL~i~~~iv~~~~G~i~v~s~-~~~Gt~~~i~lP~ 559 (565)
T PRK10935 503 -----EHTVSIRDDGIGIGELK-----------------EPEGHYGLNIMQERAERLGGTLTISQP-PGGGTTVSLTFPS 559 (565)
T ss_pred -----EEEEEEEECCcCcCCCC-----------------CCCCCcCHHHHHHHHHHcCCEEEEEEC-CCCcEEEEEEECC
Confidence 38999999999999753 136799999999999999999999999 8999999999997
Q ss_pred c
Q 005974 617 G 617 (666)
Q Consensus 617 ~ 617 (666)
.
T Consensus 560 ~ 560 (565)
T PRK10935 560 Q 560 (565)
T ss_pred C
Confidence 5
No 49
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.81 E-value=2.4e-17 Score=160.76 Aligned_cols=245 Identities=16% Similarity=0.202 Sum_probs=184.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005974 322 DHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVAL-DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSL 400 (666)
Q Consensus 322 ~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l-~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~ 400 (666)
.+..+++..++.|.-..+.........++.++++.+.-.+- ..+++-....+..+++.++.+++|+.+.+++|...+.+
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~i 327 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGI 327 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 56678888888875444443333333444444443221111 11222233345568899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCC
Q 005974 401 LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPE 480 (666)
Q Consensus 401 l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 480 (666)
.++-..+++.++..+.|++-+-++.+-++.++.--| +...+...+.+.++++++.++ .+++++..+++...+
T Consensus 328 vkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~--~~ergihcq~~~~~n 399 (497)
T COG3851 328 VKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREME--LEERGIHCQLDWRIN 399 (497)
T ss_pred HHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhh--hhhcCeEEEeccccC
Confidence 998777888788888888888888888888776443 445567889999999999888 668899888877654
Q ss_pred CCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh
Q 005974 481 LPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 560 (666)
Q Consensus 481 ~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 560 (666)
....-..-+..++++.+++++|-+||+++..|.+.....++ .+.++|+|||.|+|+..
T Consensus 400 ~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e--------------------~l~Lei~DdG~Gl~~~~-- 457 (497)
T COG3851 400 ETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE--------------------RLMLEIEDDGSGLPPGS-- 457 (497)
T ss_pred cccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc--------------------EEEEEEecCCcCCCCCC--
Confidence 33222223445999999999999999999999998876554 38999999999999763
Q ss_pred hhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 561 LLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 561 ~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+-.|+||..++++|..+||++.++|. .||++.+.+|
T Consensus 458 ----------------~v~G~Gl~GmrERVsaLGG~ltlssq---~GTrviVnLP 493 (497)
T COG3851 458 ----------------GVQGFGLTGMRERVSALGGTLTLSSQ---HGTRVIVNLP 493 (497)
T ss_pred ----------------CccCcCcchHHHHHHHhCCceEEEec---cCcEEEEecc
Confidence 23599999999999999999999997 7999999999
No 50
>PRK13559 hypothetical protein; Provisional
Probab=99.81 E-value=1.6e-18 Score=184.16 Aligned_cols=185 Identities=14% Similarity=0.205 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHH
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 455 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll 455 (666)
+.+|++.++|+++|||+.|.++++++.. ..+..++++.+.+.+.++..+++++++.. ...++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~---------~~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDER---------GWETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccC---------CcCcccHHHHH
Confidence 4568889999999999999999998763 22345577788888899988888877643 24579999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHhhcc----CCCcEEEEEEeecCCCCCCCCCC
Q 005974 456 REVIKLIKPVASCKKLSMTLIMAPELPTYAVGD-EKRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPP 530 (666)
Q Consensus 456 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d-~~~l~~vl~nLl~NAik~~----~~g~v~i~~~~~~~~~~~~~~~~ 530 (666)
+++...+... +..+.++. +..+ +..+ ...+.+|+.||+.||+||+ +.|.+.+.+.....+
T Consensus 238 ~~~~~~~~~~----~~~i~~~~-~~~~--~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~-------- 302 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEG-PGIR--LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEG-------- 302 (361)
T ss_pred HHHHHhhcCC----CceEEEEC-CCee--eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCC--------
Confidence 9998876532 34455442 2221 2212 3469999999999999993 246777766322211
Q ss_pred CCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHH-hCCEEEEEecCCCCceE
Q 005974 531 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNL-MGGHIWLDSEGLDKGST 609 (666)
Q Consensus 531 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~-~gG~I~v~S~~~g~Gt~ 609 (666)
..+.+.|.|+|.|++++. .|+|+||.+|+++++. |||++++++. +.||+
T Consensus 303 ----------~~~~i~v~d~G~~~~~~~------------------~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~ 352 (361)
T PRK13559 303 ----------AGFRIDWQEQGGPTPPKL------------------AKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLL 352 (361)
T ss_pred ----------CeEEEEEECCCCCCCCCC------------------CCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEE
Confidence 148999999999987652 3679999999999987 9999999997 56999
Q ss_pred EEEEEEec
Q 005974 610 VTFLVKLG 617 (666)
Q Consensus 610 ~~i~lP~~ 617 (666)
|++++|+.
T Consensus 353 ~~l~~P~~ 360 (361)
T PRK13559 353 ARIEIPSR 360 (361)
T ss_pred EEEEEeCC
Confidence 99999964
No 51
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.79 E-value=2.8e-19 Score=155.53 Aligned_cols=109 Identities=33% Similarity=0.582 Sum_probs=98.4
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhcc
Q 005974 487 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 565 (666)
Q Consensus 487 ~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 565 (666)
||+..+.+++.||+.||++|+++ +.+.+.+...++ ++.|+|+|+|+|||++.++++|++
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD--------------------HLSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------EEEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------eEEEEEEeccccccccccccchhh
Confidence 69999999999999999999987 777777776654 399999999999999999999999
Q ss_pred ccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 005974 566 FAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 616 (666)
Q Consensus 566 f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~ 616 (666)
+++.+......+|.|+||++|+.+++.|+|++++++. +++||+|+|.+|+
T Consensus 61 ~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 61 FFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPL 110 (111)
T ss_dssp TSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEG
T ss_pred cccccccccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEEC
Confidence 9998864444568999999999999999999999999 8999999999996
No 52
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.76 E-value=5.5e-16 Score=164.51 Aligned_cols=195 Identities=22% Similarity=0.299 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeH
Q 005974 374 HARNDFRAVMNHEMRTLMHAIIALSSLLL--ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 451 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~~I~~~~~~l~--~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 451 (666)
++|.++++.+++.+..-|.++....+... .+...++.++.++.+.+.++...+-++.+.. .+++...+-
T Consensus 169 ~ER~RIARdLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~~~e~l~evR~~v~---------~Lrp~~l~~ 239 (365)
T COG4585 169 EERNRIARDLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKLLREALQEVRALVR---------DLRPVELEG 239 (365)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCchhhc
Confidence 67899999999999999999987322222 2233444555555555544443333333322 222222222
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCC
Q 005974 452 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 452 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
..+...+...........++.+........+.....-+..+.+++++.++|++||+++..+.+.+...++.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~--------- 310 (365)
T COG4585 240 LGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDDE--------- 310 (365)
T ss_pred chHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCCE---------
Confidence 33344444444444445566666655432222233467889999999999999999999999998877654
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
+.++|.|||+|++++.. +.|+||..+|++++.+||++.+.|. +|+||+++
T Consensus 311 -----------l~l~V~DnG~Gf~~~~~------------------~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i~ 360 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDKE------------------GGGFGLLGMRERVEALGGTLTIDSA-PGQGTTVT 360 (365)
T ss_pred -----------EEEEEEECCcCCCcccc------------------CCCcchhhHHHHHHHcCCEEEEEec-CCCceEEE
Confidence 99999999999988642 2489999999999999999999999 89999999
Q ss_pred EEEEe
Q 005974 612 FLVKL 616 (666)
Q Consensus 612 i~lP~ 616 (666)
+++|+
T Consensus 361 i~lPl 365 (365)
T COG4585 361 ITLPL 365 (365)
T ss_pred EecCC
Confidence 99995
No 53
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.69 E-value=1e-15 Score=169.77 Aligned_cols=147 Identities=20% Similarity=0.345 Sum_probs=114.8
Q ss_pred eeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHhhccC-------------CCcE
Q 005974 449 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFTK-------------EGYV 512 (666)
Q Consensus 449 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~v---l~nLl~NAik~~~-------------~g~v 512 (666)
+.+..++...-..++..+...+..+++.+.... +..|+..+.++ +.||+.||++|+- .|.+
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 446667777777776666666666666665542 44599999888 5799999999962 2556
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh---------------------hhhhccccccCC
Q 005974 513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI---------------------PLLFTKFAQSRG 571 (666)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~---------------------~~if~~f~~~~~ 571 (666)
.+......+ .+.|+|+|+|.||+++.+ +.||+|+|++..
T Consensus 420 ~l~a~~~~~--------------------~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEHQGG--------------------NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 666554332 389999999999998654 359999888765
Q ss_pred CCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 005974 572 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 619 (666)
Q Consensus 572 ~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~ 619 (666)
..+..+|.|+||.+||++++.|||+|+++|. +|+||+|++.+|+...
T Consensus 480 ~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltla 526 (670)
T PRK10547 480 QVTDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTLA 526 (670)
T ss_pred ccccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechhh
Confidence 5444569999999999999999999999999 8999999999999753
No 54
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.65 E-value=3.7e-12 Score=123.39 Aligned_cols=202 Identities=16% Similarity=0.215 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHH
Q 005974 373 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 452 (666)
Q Consensus 373 ~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 452 (666)
..++.++++.+++.+.+-|-+..-.+++....-.++..- ....+.++++.+..-|+++..+|. .-.+.-.+...|.
T Consensus 248 edEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-a~~aieKaa~aL~~Ai~EVRRiSH---~LRP~~LDDLGL~ 323 (459)
T COG4564 248 EDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-AHPAIEKAADALNGAIKEVRRISH---DLRPRALDDLGLT 323 (459)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCC-CchhhhhHHHHHHHHHHHHHHhcc---ccChhhhhhhhHH
Confidence 345778889999999999999998888887653322211 113467777888888888877766 1112223345566
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCC
Q 005974 453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEF 532 (666)
Q Consensus 453 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~ 532 (666)
..++.+++.++ +..++.++++.+.........-...+++|.++.++|.=+|+...++.+......+.
T Consensus 324 aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~---------- 390 (459)
T COG4564 324 AALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQMGDM---------- 390 (459)
T ss_pred HHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcc----------
Confidence 66666666665 46788888876554333333356789999999999999999888888877655443
Q ss_pred CccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 005974 533 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 612 (666)
Q Consensus 533 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i 612 (666)
+.+.|+|||+|++.+... .+-.|+||..+++++..+||++.++|. + +||.+++
T Consensus 391 ----------vql~vrDnG~GF~~~~~~---------------~~~~GiGLRNMrERma~~GG~~~v~s~-p-~GTel~v 443 (459)
T COG4564 391 ----------VQLMVRDNGVGFSVKEAL---------------QKRHGIGLRNMRERMAHFGGELEVESS-P-QGTELTV 443 (459)
T ss_pred ----------eEEEEecCCCCccchhhc---------------cCccccccccHHHHHHHhCceEEEEec-C-CCcEEEE
Confidence 999999999999876431 123599999999999999999999998 4 5999999
Q ss_pred EEEecC
Q 005974 613 LVKLGI 618 (666)
Q Consensus 613 ~lP~~~ 618 (666)
.+|...
T Consensus 444 ~Lp~~~ 449 (459)
T COG4564 444 LLPLDA 449 (459)
T ss_pred Eecchh
Confidence 999854
No 55
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.56 E-value=2.6e-12 Score=124.50 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
.+..++..++|.+||-|+.|.+++.+-.+...++ ..+.+......+..|...-+.|.. . ....++...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~He~L~~---------s-~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYK---------S-GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHhc---------C-CcceEcHHHH
Confidence 3667888899999999999999988877765554 445544444444444433333321 1 3457889999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC----CCcEEEEEEeecCCCCCCCCCC
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPP 530 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~----~g~v~i~~~~~~~~~~~~~~~~ 530 (666)
++.+...+.+....+.+.+....+++... -.....-|--|+.+|++||+||+- .|.|.|.+...++..
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~l-~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------- 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNVFL-DPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------- 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCceEE-CchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC-------
Confidence 99999988876445566666665554221 122345688999999999999973 577777777665431
Q ss_pred CCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHH-HHhCCEEEEEecCCCCceE
Q 005974 531 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFV-NLMGGHIWLDSEGLDKGST 609 (666)
Q Consensus 531 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv-~~~gG~I~v~S~~~g~Gt~ 609 (666)
...+.|.|||.|+|.+.- + ...|+|+.+++.++ ++.||.+...+. .||+
T Consensus 159 -----------~~~l~v~deg~G~~~~~~------~----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~---~Gt~ 208 (221)
T COG3920 159 -----------RFLLTVWDEGGGPPVEAP------L----------SRGGFGLQLVERLVPEQLGGELEDERP---DGTE 208 (221)
T ss_pred -----------eEEEEEEECCCCCCCCCC------C----------CCCCcHHHHHHHHHHHHcCCeEEEEcC---CCEE
Confidence 278899999999987631 0 13599999999999 899999999886 3999
Q ss_pred EEEEEEecCC
Q 005974 610 VTFLVKLGIC 619 (666)
Q Consensus 610 ~~i~lP~~~~ 619 (666)
|++.+|....
T Consensus 209 ~~i~~~~~~~ 218 (221)
T COG3920 209 FRLRFPLSEA 218 (221)
T ss_pred EEEEEecccc
Confidence 9999998643
No 56
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.53 E-value=5.7e-13 Score=148.62 Aligned_cols=147 Identities=21% Similarity=0.346 Sum_probs=114.7
Q ss_pred ceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHhhcc-------------CCCc
Q 005974 448 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFT-------------KEGY 511 (666)
Q Consensus 448 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~v---l~nLl~NAik~~-------------~~g~ 511 (666)
.+.+..++...-..++..+..-+-.+++.+.+.... -|..-+.++ |.+|+.||++|. +.|.
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~te---lDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDTE---LDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCee---ehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 345556666666666666655555666666555432 388777776 679999999996 3477
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC------------------------hhhhhcccc
Q 005974 512 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD------------------------IPLLFTKFA 567 (666)
Q Consensus 512 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~------------------------~~~if~~f~ 567 (666)
++++....++ .+.|+|+|+|.||+.+. ..-||.|.|
T Consensus 466 I~L~A~~~gn--------------------~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGF 525 (716)
T COG0643 466 ITLSAYHEGN--------------------NIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGF 525 (716)
T ss_pred EEEEEEcCCC--------------------eEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCC
Confidence 7777665544 39999999999997664 234899999
Q ss_pred ccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 005974 568 QSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 568 ~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
++...-+.-+|.|.||=+||+-++++||+|+++|+ +|+||+|++.||+..
T Consensus 526 STa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTL 575 (716)
T COG0643 526 STAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTL 575 (716)
T ss_pred CcchhhhcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHH
Confidence 99888777789999999999999999999999999 999999999999974
No 57
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.47 E-value=5.2e-13 Score=143.10 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=102.9
Q ss_pred EecHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhh
Q 005974 486 VGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 561 (666)
Q Consensus 486 ~~d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~ 561 (666)
.++...|.+++.||++||++|+..+ .+.+.+...+.+ ...+.++|+|||+||+++++++
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~-----------------~~~~~I~V~DNG~GIp~e~l~~ 93 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEG-----------------KDHYRVTVEDNGPGIPPEEIPK 93 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCC-----------------CcEEEEEEEcCCCCCCHHHHHH
Confidence 3466889999999999999999764 355555432111 1148899999999999999999
Q ss_pred hhccccccCCCCC---CCCCccchHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCCCCCCCCCCcCcccCCCC
Q 005974 562 LFTKFAQSRGSSC---QTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGICNNPGSPIHPVALKGRAS 636 (666)
Q Consensus 562 if~~f~~~~~~~~---~~~g~GlGL~i~k~iv~~~gG~-I~v~S~~~g~Gt-~~~i~lP~~~~~~~~~~~~~~~~~~~~~ 636 (666)
+|++|+.+..... ..++.|+||++|+.+++.|+|+ +++.|. +++|+ .|++.+|+......+...... .
T Consensus 94 iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~-~~~g~~~~~~~l~id~~kn~g~i~~~~------~ 166 (535)
T PRK04184 94 VFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISS-TGGSKKAYYFELKIDTKKNEPIILERE------E 166 (535)
T ss_pred HhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEe-cCCCceEEEEEEEecccccCCeecccc------c
Confidence 9999865433221 2246899999999999999997 999998 78887 899999887543221110100 0
Q ss_pred CCCCCCCCCceEEecCchh
Q 005974 637 HGSADLTGPKPLFRDNDQI 655 (666)
Q Consensus 637 ~~~~~~~~~~iLvvDD~~~ 655 (666)
......+|-+|.|..|+..
T Consensus 167 ~~~~~~~GT~V~V~l~~~~ 185 (535)
T PRK04184 167 VDWDRWHGTRVELEIEGDW 185 (535)
T ss_pred cCCCCCCCEEEEEEECCcC
Confidence 0112347888888766554
No 58
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-11 Score=133.77 Aligned_cols=182 Identities=18% Similarity=0.190 Sum_probs=120.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHH
Q 005974 382 VMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKL 461 (666)
Q Consensus 382 ~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~ 461 (666)
.-.|.+.|.|++|..++..-. .+.+.+++.++.++.|..- ....+..++..-+.-+.++
T Consensus 265 i~pHfL~NtL~~I~~~~~~~~------------------~~~~~~~v~~l~~llR~~l---~~~~~~~~l~~E~~~~~ky 323 (456)
T COG2972 265 INPHFLYNTLETIRMLAEEDD------------------PEEAAKVVKALSKLLRYSL---SNLDNIVTLEIELLLIEKY 323 (456)
T ss_pred cchHHHHhHHHHHHHHHHhcC------------------HHHHHHHHHHHHHHHHHHh---hCCCCeeeHHHHHHHHHHH
Confidence 349999999999998854321 2223333333333333111 1122356777777777777
Q ss_pred HHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhcc-----CCCcEEEEEEeecCCCCCCCCCCCCCccC
Q 005974 462 IKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-----KEGYVSIIASVAKPESLSDWRPPEFYPVS 536 (666)
Q Consensus 462 ~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~-----~~g~v~i~~~~~~~~~~~~~~~~~~~~~~ 536 (666)
+. +++.+++..++++.+.+.... +-..+..+++.|++||++|+ ++|.|.+.....+.
T Consensus 324 l~--iq~~r~~~~le~~~~i~~~~~-~l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~--------------- 385 (456)
T COG2972 324 LE--IQKLRIGDRLEVPLPIDEELE-PLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDD--------------- 385 (456)
T ss_pred HH--HHHhccCcceEEEeccCcccc-cccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCC---------------
Confidence 76 445565555554443332221 23446778999999999998 23455555554422
Q ss_pred CCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCC-ccchHHHHHHHHHHhCCE--EEEEecCCCCceEEEEE
Q 005974 537 TDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPR-AGLGLAICRRFVNLMGGH--IWLDSEGLDKGSTVTFL 613 (666)
Q Consensus 537 ~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g-~GlGL~i~k~iv~~~gG~--I~v~S~~~g~Gt~~~i~ 613 (666)
.+.++|+|||+||+++..+.+...- ++ .|+||..++++++.+.|. +.++|. +++||.+.+.
T Consensus 386 -----~i~i~i~Dng~g~~~~~~~~~~~~~----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~-~~~gt~v~~~ 449 (456)
T COG2972 386 -----VIQISISDNGPGIDEEKLEGLSTKG----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQ-PGKGTFVQII 449 (456)
T ss_pred -----EEEEEEeeCCCCCChhHHHHHHhhc----------cCcccccHHHHHHHHHHeeCCcceeEeec-CCCcEEEEEE
Confidence 4999999999999998766543321 12 499999999999999998 689999 9999999999
Q ss_pred EEecC
Q 005974 614 VKLGI 618 (666)
Q Consensus 614 lP~~~ 618 (666)
+|...
T Consensus 450 ~~~~~ 454 (456)
T COG2972 450 IPKRE 454 (456)
T ss_pred eehhh
Confidence 99743
No 59
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.44 E-value=1.5e-12 Score=112.21 Aligned_cols=110 Identities=36% Similarity=0.641 Sum_probs=92.0
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhcc
Q 005974 487 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 565 (666)
Q Consensus 487 ~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 565 (666)
+|...+.+++.|++.||++|+.. +.+.+.+...+. .+.+.|.|+|.|++++..+++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~--------------------~~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD--------------------HLEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHhcC
Confidence 47788999999999999999986 666666654432 389999999999999999999999
Q ss_pred ccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 005974 566 FAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 566 f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
++..+.......+.|+||++|+++++.|+|++++.+. ++.|++|++.+|+.
T Consensus 61 ~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~ 111 (111)
T smart00387 61 FFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPLE 111 (111)
T ss_pred eEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeCC
Confidence 8876532222347899999999999999999999987 78899999999963
No 60
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.25 E-value=1.2e-12 Score=149.84 Aligned_cols=243 Identities=30% Similarity=0.356 Sum_probs=199.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHH
Q 005974 378 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 457 (666)
Q Consensus 378 ~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~ 457 (666)
.+...++||+|+|++. +....+.....+.+++.+....+..+.....+++++++.++.+.+..++...+|++..+++.
T Consensus 223 ~~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~ 300 (786)
T KOG0519|consen 223 GFLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNF 300 (786)
T ss_pred hhcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhh
Confidence 3999999999999988 55555556678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCC-----CCCC---
Q 005974 458 VIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLS-----DWRP--- 529 (666)
Q Consensus 458 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~-----~~~~--- 529 (666)
+.+.+.+.+..++..+....+.+.|..+.+|+.++.|++.|++.||+|++..|.+.......+..... .|..
T Consensus 301 ~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~ 380 (786)
T KOG0519|consen 301 VISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAH 380 (786)
T ss_pred hhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhhhhhhh
Confidence 99999999999999999988888888899999999999999999999999999888877655432210 0000
Q ss_pred ---------------CCCCccC---C--CCceEEEEEEeecCCCCCCCChhh-hhccccccCCCCCC-CCCccchHHHHH
Q 005974 530 ---------------PEFYPVS---T--DGHFYLRVQVNDSGCGVPPQDIPL-LFTKFAQSRGSSCQ-TPRAGLGLAICR 587 (666)
Q Consensus 530 ---------------~~~~~~~---~--~~~~~l~i~V~D~G~Gi~~~~~~~-if~~f~~~~~~~~~-~~g~GlGL~i~k 587 (666)
+.-.+.. . ..-..-.+.+.|+|.||+...... +|.+|.+......+ .+|+|+|+.+++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~ 460 (786)
T KOG0519|consen 381 MAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVF 460 (786)
T ss_pred hccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhc
Confidence 0000000 0 001123567899999999998877 99999887766544 469999999999
Q ss_pred HHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCC
Q 005974 588 RFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPG 623 (666)
Q Consensus 588 ~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~ 623 (666)
.+++.++|.+.+.+. ...|++|++.+++....+..
T Consensus 461 ~l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~ 495 (786)
T KOG0519|consen 461 SLVELMSGEISDISC-ISLGKTFSFTLDLLTNLPKS 495 (786)
T ss_pred cHHHHHHHHhhhhhh-hccCceeeEEEEeccCCCcc
Confidence 999999999999998 88999999999998766543
No 61
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.23 E-value=7.3e-11 Score=99.93 Aligned_cols=101 Identities=36% Similarity=0.617 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhccCC--CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhcccccc
Q 005974 492 LMQTILNIVGNAVKFTKE--GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 569 (666)
Q Consensus 492 l~~vl~nLl~NAik~~~~--g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 569 (666)
+.+++.++++||++|+.. +.+.+.+..... .+.+.|.|+|.|+++...++.|.++...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~--------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGD--------------------HLEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCC--------------------EEEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 357899999999999984 555555544322 3899999999999999999998876111
Q ss_pred CCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 005974 570 RGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 614 (666)
Q Consensus 570 ~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~l 614 (666)
.......+.|+||.+|+++++.|||++++.+. .+.|++|++.+
T Consensus 61 -~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~ 103 (103)
T cd00075 61 -SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTITL 103 (103)
T ss_pred -CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEC
Confidence 11112347899999999999999999999997 66899988753
No 62
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.22 E-value=1.2e-10 Score=123.61 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=84.4
Q ss_pred EEecHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh
Q 005974 485 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 560 (666)
Q Consensus 485 v~~d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 560 (666)
..++...+.+++.||++||++|+..+ .+.+.+...+.+ ++.++|+|||+||++++++
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~-------------------~~~I~V~DNG~GIp~edl~ 82 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKD-------------------HYKVTVEDNGPGIPEEYIP 82 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------eEEEEEEECCCCCCHHHHH
Confidence 44588899999999999999998753 355544332221 3789999999999999999
Q ss_pred hhhccccccCCCC---CCCCCccchHHHHHHHHHHhCCE-EEEEecCCCCceEE--EEEEEe
Q 005974 561 LLFTKFAQSRGSS---CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTV--TFLVKL 616 (666)
Q Consensus 561 ~if~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~gG~-I~v~S~~~g~Gt~~--~i~lP~ 616 (666)
++|++|+.++... ....+.|+||++++.+.+.|+|+ +++.|. .+ |..+ .+.+.+
T Consensus 83 ~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~-~~-g~~~~~~~~~~i 142 (488)
T TIGR01052 83 KVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISS-TG-GEIYVYKMKLKI 142 (488)
T ss_pred hhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEe-cC-CceEEEEEEEEe
Confidence 9999987655432 12247899999999999999998 999998 44 5555 444443
No 63
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.22 E-value=1.9e-10 Score=125.79 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=87.1
Q ss_pred cCCceEEEEeCCCCCce-EEecHHHHHHHHHHHHHHHhhccCCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceE
Q 005974 468 CKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFY 542 (666)
Q Consensus 468 ~~~i~~~~~~~~~~~~~-v~~d~~~l~~vl~nLl~NAik~~~~g~----v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (666)
.+.+.+..-+..+.+.. ...|...|.+++.|||+||++|+..++ +.+.+..... +
T Consensus 22 ~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~--------------------~ 81 (795)
T PRK14868 22 QREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGD--------------------Y 81 (795)
T ss_pred ccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCC--------------------E
Confidence 45666665555554432 223577899999999999999997653 4444433211 4
Q ss_pred EEEEEeecCCCCCCCChhhhhccccccCC-----CCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCC-ceEEEEEEEe
Q 005974 543 LRVQVNDSGCGVPPQDIPLLFTKFAQSRG-----SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK-GSTVTFLVKL 616 (666)
Q Consensus 543 l~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~-Gt~~~i~lP~ 616 (666)
+.|.|+|||+||++++++++|++|+.+.. .+....|.|||++++...+ .+||.+++.|. .+. +..+.+.+++
T Consensus 82 v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~-~~~~~~g~~~~L~I 159 (795)
T PRK14868 82 YRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSR-TQGSEEAQYFELII 159 (795)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeC-CCCCCceeEEEEEE
Confidence 89999999999999999999999875422 1112246666666666665 36888999998 443 3444455555
Q ss_pred cCC
Q 005974 617 GIC 619 (666)
Q Consensus 617 ~~~ 619 (666)
...
T Consensus 160 d~g 162 (795)
T PRK14868 160 DTD 162 (795)
T ss_pred ecC
Confidence 433
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.18 E-value=2.3e-10 Score=103.34 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHhhccC----CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~----~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...+..++.|+++||++|+. ++.+.+.+...++ .+.++|.|+|.||+ ..+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~--------------------~~~i~I~D~G~gi~--~~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH--------------------EVYITVRDEGIGIE--NLEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC--------------------EEEEEEEEcCCCcC--chhHhh
Confidence 566799999999999999863 2456665554333 38999999999997 367899
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 614 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~l 614 (666)
+||++.+.. ..+.|+||+++++ +.+++++++. +++||+|+++.
T Consensus 94 ~~~~~~~~~---~~~~GlGL~lv~~----~~~~l~~~~~-~~~Gt~v~i~~ 136 (137)
T TIGR01925 94 EPLYTSKPE---LERSGMGFTVMEN----FMDDVSVDSE-KEKGTKIIMKK 136 (137)
T ss_pred CCCcccCCC---CCCCcccHHHHHH----hCCcEEEEEC-CCCCeEEEEEe
Confidence 999876542 2478999998876 5579999998 89999998864
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.16 E-value=4.3e-09 Score=120.64 Aligned_cols=186 Identities=18% Similarity=0.223 Sum_probs=137.9
Q ss_pred HHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEE--EEeecccc--ccCcc
Q 005974 163 REMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQI--QIGSS 238 (666)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~--~~~~~ 238 (666)
+..+.++++....+.+.++++.+.+..+.++++..+++.+.+.++++.|+|+++|+++..+.+ ++..+... .....
T Consensus 172 ~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~~ 251 (686)
T PRK15429 172 VDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSE 251 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhccccccc
Confidence 333334555556889999999999999999999999999999999999999999987776655 33332221 12334
Q ss_pred cccCChhHHHHhcccCceEccCCCcchhhhcc---ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC
Q 005974 239 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 315 (666)
Q Consensus 239 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 315 (666)
++...+.++.++.++++..+++...+...... ......+..+.+.+|| ..++.++||+.+.+.
T Consensus 252 ~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL--------------~~~~~v~GvL~l~~~ 317 (686)
T PRK15429 252 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL--------------MSGDTMLGVLKLAQC 317 (686)
T ss_pred CCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeE--------------EECCEEEEEEEEeeC
Confidence 45566788999999999999766544322110 0111223456777884 445667999988777
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 316 GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVAL 362 (666)
Q Consensus 316 ~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l 362 (666)
+...|++.|++++..+|+++|++++++..+++.++..+++.+.+..+
T Consensus 318 ~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~l 364 (686)
T PRK15429 318 EEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 364 (686)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHH
Confidence 78899999999999999999999999999998887777766655443
No 66
>PRK03660 anti-sigma F factor; Provisional
Probab=99.13 E-value=6.4e-10 Score=101.67 Aligned_cols=102 Identities=23% Similarity=0.321 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...+.+++.|++.||++|+.. +.+.+.....++ .+.++|.|+|.||++ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~--------------------~l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEE--------------------ELEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCC--------------------EEEEEEEEccCCCCh--HHHhh
Confidence 5677999999999999998742 445555543322 389999999999986 56888
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 619 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~ 619 (666)
++|++.+... .+.|+||+++++ +.+++++++. ++.||+|+++.++...
T Consensus 94 ~~~~~~~~~~---~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~~ 141 (146)
T PRK03660 94 QPLYTTKPEL---ERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKKS 141 (146)
T ss_pred CCCcccCCCC---CCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEeccc
Confidence 9988754321 367999998774 5678999998 7899999999998654
No 67
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.11 E-value=6.5e-10 Score=86.92 Aligned_cols=65 Identities=37% Similarity=0.656 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQ-RVMIETVLKSSNLLTTLVDDVLDLSRLEDG 440 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 440 (666)
+++|++.++|||||||++|.++++++.+ ...+++. +++++.+..+++++..++++++++++.+.|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6789999999999999999999999999 7788887 999999999999999999999999998765
No 68
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.09 E-value=5.5e-10 Score=122.28 Aligned_cols=112 Identities=19% Similarity=0.328 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...|.+++.||++||++++..+ .+.+.+...+.+ ++.++|.|||+||++++++++|
T Consensus 33 ~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~-------------------~~~I~V~DNG~GIp~e~l~~iF 93 (659)
T PRK14867 33 KLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSD-------------------HYKVAVEDNGPGIPPEFVPKVF 93 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------EEEEEEEeeCeeCCHHHHhhhh
Confidence 34446699999999999998753 455555432221 4899999999999999999999
Q ss_pred ccccccCCCC---CCCCCccchHHHHHHHHHHh-CCEEEEEecCCCCceEEEEEEEecCC
Q 005974 564 TKFAQSRGSS---CQTPRAGLGLAICRRFVNLM-GGHIWLDSEGLDKGSTVTFLVKLGIC 619 (666)
Q Consensus 564 ~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~-gG~I~v~S~~~g~Gt~~~i~lP~~~~ 619 (666)
++|+.++... ....+.|+||+++..+.+.+ ||.+++.|. ++.|++|++.+|+...
T Consensus 94 erF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i~ 152 (659)
T PRK14867 94 GKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSVE 152 (659)
T ss_pred ccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEec
Confidence 9987754321 12236899999999999886 556999998 8999999999999764
No 69
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.09 E-value=1.4e-08 Score=115.93 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecc--ccccCcccccCChhHHHHhcc
Q 005974 175 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDVFNS 252 (666)
Q Consensus 175 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~ 252 (666)
+..++++++.+.+..|.+++++.+++.+.+.++++.|+||+.|+++..+.+....+. .......++.+.+.++.+..+
T Consensus 2 L~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~t 81 (748)
T PRK11061 2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81 (748)
T ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhcc
Confidence 356889999999999999999999999999999999999999988876665544443 222334567788999999999
Q ss_pred cCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHH
Q 005974 253 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 332 (666)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va 332 (666)
++++.+++...++++.........+.++.+++||. .++..+|++.+.+..++.|++++.+++..+|
T Consensus 82 g~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~--------------~~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA 147 (748)
T PRK11061 82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPII--------------YRRQLLGVLVVQQRELRQFDESEESFLVTLA 147 (748)
T ss_pred CceEEECCcccCcccccCccccCccceEEEEEEEe--------------eCCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 99999999998887754333334556788888864 3345799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 333 DQVAVALSHAAILEDSMRARNQ--------------------------------LMEQNVALDSARREAEKAIHARNDFR 380 (666)
Q Consensus 333 ~~~a~al~~a~l~~~~~~~~~~--------------------------------L~~~~~~l~~~~~~~~~~~~~~~~~~ 380 (666)
.++++++.|++..+.....+.. -.+.+.+.++.++..+++.+....+.
T Consensus 148 ~~aAiAL~na~l~~~~~~~~~~~l~G~~~s~Gia~G~~~~~~~~~~~~~~~~~~~~~~e~E~~Rl~~A~~~a~~eL~~l~ 227 (748)
T PRK11061 148 TQLAAILSQSQLTALFGQYRQTRIRALPASPGVAIAEGWQDATQPLLEQVYPASTLDPALERERLTGALEEAANEFRRYS 227 (748)
T ss_pred HHHHHHHHHHhhccccccccccccCceEccCeEEEEEEEEeccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987766322111 00012223333333333333334444
Q ss_pred HHHHHHHhhHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCccccccceeHHHHHHHH
Q 005974 381 AVMNHEMRTLMHAIIA-LSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL-DLSRLEDGSLELDNGPFNLQIVLREV 458 (666)
Q Consensus 381 ~~isHelr~PL~~I~~-~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll-~~~~~~~~~~~l~~~~~~l~~ll~~~ 458 (666)
..+..++......|.. ...+|.+..+..+..+.+..-..........++++. .|.++++. -++.+..|+.++-+.+
T Consensus 228 ~~~~~~~g~~~a~If~ah~~mL~D~~l~~~v~~~I~~~~~Ae~Av~~~~~~~~~~f~~~dd~--ylreRa~Di~Dv~~Rv 305 (748)
T PRK11061 228 KRFAAGAQKETAAIFDLYSHLLNDPRLRRELFAEVDKGSVAEWAVKQVIEKFAEQFAALSDN--YLRERAGDLRALGQRL 305 (748)
T ss_pred HHHHhhhCHHHHHHHHHHHHHhCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHH
Confidence 4444555444455544 444554444434433333222212222333333332 23333322 2334456777777777
Q ss_pred HHHHH
Q 005974 459 IKLIK 463 (666)
Q Consensus 459 ~~~~~ 463 (666)
+..+.
T Consensus 306 l~~L~ 310 (748)
T PRK11061 306 LFHLD 310 (748)
T ss_pred HHHhC
Confidence 77664
No 70
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=99.02 E-value=6.2e-08 Score=96.54 Aligned_cols=190 Identities=18% Similarity=0.242 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----ccccceeHHHHHHHHHHHHHHHhhcCC---ceEEEEeCCCC
Q 005974 409 EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLE----LDNGPFNLQIVLREVIKLIKPVASCKK---LSMTLIMAPEL 481 (666)
Q Consensus 409 ~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~----l~~~~~~l~~ll~~~~~~~~~~~~~~~---i~~~~~~~~~~ 481 (666)
..+.+++....+--.++-++++-+-+........+ .-...+++.++++++.+..+..+..+= -++.++-....
T Consensus 172 ~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 172 NIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 34666777666655666677754443331111100 112357899999999999987776442 23333333333
Q ss_pred CceEEecHHHHHHHHHHHHHHHhhcc-----CCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCC
Q 005974 482 PTYAVGDEKRLMQTILNIVGNAVKFT-----KEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 552 (666)
Q Consensus 482 ~~~v~~d~~~l~~vl~nLl~NAik~~-----~~g~----v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 552 (666)
...+ .-+..|..++.+|+.||++++ ..+. |.|.+...+++ +.|.|+|.|-
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD--------------------l~ikISDrGG 310 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED--------------------LLIKISDRGG 310 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc--------------------eEEEEecCCC
Confidence 3222 268899999999999999976 2233 55555443333 8899999999
Q ss_pred CCCCCChhhhhccccccCCCCC-------CCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 553 GVPPQDIPLLFTKFAQSRGSSC-------QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 553 Gi~~~~~~~if~~f~~~~~~~~-------~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
||+.++.+++|+-.|++.+... .-.|.|.||.++|..++..||++.+.|- .|-||-..+.+......
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~ls~~ 384 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL-EGIGTDVYIYLKALSME 384 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEee-eccccceEEEeccCCcc
Confidence 9999999999998887543211 1138999999999999999999999998 89999999998764433
No 71
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.01 E-value=4.4e-09 Score=97.44 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|+||+++..+..|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED--------------------RLEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC--------------------EEEEEEEECCcCCChHHhcccc
Confidence 5566888999999999999864 445665554432 3999999999999998888888
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCC
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPG 623 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~ 623 (666)
.|++..+.... ..+.|+||.+++++++. +.+.+. .|+++++.-.+...+.+.
T Consensus 99 ~p~~~~~~~~~-~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~~~~~~~ 150 (161)
T PRK04069 99 GPYDISKPIED-LREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYINREQVEN 150 (161)
T ss_pred CCCCCCCcccc-cCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcCchhccC
Confidence 88876543321 23679999999999986 666653 588888887776555443
No 72
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.82 E-value=2.3e-07 Score=103.45 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEE-EeeccccccCcccccCChhHHHHhccc
Q 005974 175 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQIQIGSSVPINLPIVTDVFNSA 253 (666)
Q Consensus 175 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 253 (666)
+..++++++.+.+..|++++++.+++.+.+.++++.|+|+++++++.....+ +++.........++...+.++.++.++
T Consensus 4 L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~ 83 (534)
T TIGR01817 4 LAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATG 83 (534)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhcC
Confidence 5678999999999999999999999999999999999999998876654433 222222222245566788999999999
Q ss_pred CceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCC-CCccchhhhHHHHHHH
Q 005974 254 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELELIDVVA 332 (666)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~-~~~~~~~e~~ll~~va 332 (666)
+++.+++...+..+.........+..+.+++||. .++..+|++.+.+.. .+.|++++++++..+|
T Consensus 84 ~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~--------------~~g~viGvL~v~s~~~~~~ft~~d~~lL~~lA 149 (534)
T TIGR01817 84 NSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIK--------------ADSETIGVLAADRDFRSRERLEEEVRFLEMVA 149 (534)
T ss_pred CeEEecccccCchhhhccccccCCcceEEEEEEc--------------CCCEEEEEEEEEeccccccccHHHHHHHHHHH
Confidence 9999999888776643222234556788999953 455679999998765 5678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005974 333 DQVAVALSHAAILE 346 (666)
Q Consensus 333 ~~~a~al~~a~l~~ 346 (666)
.+++++|..++.+.
T Consensus 150 ~~ia~aI~~~~~~~ 163 (534)
T TIGR01817 150 NLIGQTVRLHRLVA 163 (534)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999997766554
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.76 E-value=8.6e-08 Score=88.44 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|.|++++..+..|
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~gfd~~~~~~~~ 98 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED--------------------RLEIIVSDQGDSFDMDTFKQSL 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC--------------------EEEEEEEEcccccCchhhcccc
Confidence 3445888999999999999853 456666655433 3999999999999999888878
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
.++....... ...+.|+||++++++++ ++.+++. +|+++++...+...+
T Consensus 99 ~~~~~~~~~~-~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~~~~ 147 (159)
T TIGR01924 99 GPYDGSEPID-DLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLNREQ 147 (159)
T ss_pred CCCCCCCCcc-cCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEcccc
Confidence 7765544332 12367999999999998 5777664 468888877665443
No 74
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.76 E-value=1.5e-07 Score=83.59 Aligned_cols=129 Identities=22% Similarity=0.344 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhhhc
Q 005974 190 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 269 (666)
Q Consensus 190 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 269 (666)
|++++++.+++.+.+.++++.++||+.++++..+...+.++........++...+.+..++.++++...++.....
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDERD---- 76 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC-T----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccccc----
Confidence 6789999999999999999999999999988888888777443333336678888999999999987776543321
Q ss_pred cccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 005974 270 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 341 (666)
Q Consensus 270 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~ 341 (666)
..+..+.+.+|+. .++..+|++.+....++.|++.++++++.+|++++++++|
T Consensus 77 -----~~~~~s~~~vPl~--------------~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 77 -----FLGIRSLLVVPLR--------------SRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTCEEEEEEEE--------------ETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CCCCCEEEEEEEe--------------ECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 1455777888854 3446799999988888899999999999999999999964
No 75
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.61 E-value=2.5e-07 Score=84.88 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=105.0
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccc--cCcccccCChhHHHHhcccCceEccCCCcchhh
Q 005974 190 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 267 (666)
Q Consensus 190 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 267 (666)
|++++++.+++.+.+.+++++|+|++.+.++......+....... .....+...+...+++.+++++.+++......+
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 678999999999999999999999999999888877666554322 333455567789999999999999988776654
Q ss_pred hccccc---------------cCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCC-CccchhhhHHHHHH
Q 005974 268 RLLVGR---------------YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVV 331 (666)
Q Consensus 268 ~~~~~~---------------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~v 331 (666)
...... ...+.++.+.+|+ ..++..+|++.+....+ +.|+++|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi--------------~~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVPI--------------ISGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEE--------------EETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEeee--------------ecccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 422111 1456777888884 44556799999988887 99999999999999
Q ss_pred HHHHHHHH
Q 005974 332 ADQVAVAL 339 (666)
Q Consensus 332 a~~~a~al 339 (666)
|.+++++|
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999886
No 76
>PF14501 HATPase_c_5: GHKL domain
Probab=98.57 E-value=9.9e-07 Score=74.64 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
++..+..+|.||++||++++.. ..+.+.+...++ .+.|.|++.-.+ +. +.++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~N~~~~---~~-~~~~ 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG--------------------FLVIIIENSCEK---EI-EKLE 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC--------------------EEEEEEEECCCC---cc-cccc
Confidence 4567889999999999999743 334444444332 488999888544 11 2221
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+. .....+.|+||.++++++++++|++.++.+ +.-.++++.||
T Consensus 58 ----~~---~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~--~~~f~~~i~ip 100 (100)
T PF14501_consen 58 ----SS---SSKKKGHGIGLKNVKKILEKYNGSLSIESE--DGIFTVKIVIP 100 (100)
T ss_pred ----cc---ccCCCCCCcCHHHHHHHHHHCCCEEEEEEE--CCEEEEEEEEC
Confidence 11 122357899999999999999999999887 44455555555
No 77
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.51 E-value=4.3e-06 Score=96.05 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccc---ccCcccccCChhHHHHhc
Q 005974 175 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI---QIGSSVPINLPIVTDVFN 251 (666)
Q Consensus 175 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~ 251 (666)
...|.++++.+.+..|+.+++..+...+.+.+.++++.|.++|+....+.. +...... ..........+..+.+++
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 456889999999999999999999999999999999999999987766554 2222111 111223346677788999
Q ss_pred ccCceEccCCCcchhhhcc-ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHH
Q 005974 252 SAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 330 (666)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 330 (666)
++++..+++..-..++... .....++-.....+|| ..++.++|++++....++.|+++|.+++..
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~lgvPl--------------~~~~~v~G~l~l~~~~~~~Ft~~d~~ll~~ 152 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMPL--------------AAEGHIFGGCEFIRYDDRPWSEKEFNRLQT 152 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccccCccceEEece--------------eeCCeeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999988865443322211 1223344445555774 445667999998887789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 331 VADQVAVALSHAAILEDSMRARNQLMEQNVA 361 (666)
Q Consensus 331 va~~~a~al~~a~l~~~~~~~~~~L~~~~~~ 361 (666)
+|.++++|+++++++++.++..+.|+++..+
T Consensus 153 la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 153 FTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999888777776444433
No 78
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.48 E-value=7.1e-06 Score=90.76 Aligned_cols=166 Identities=14% Similarity=0.129 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCCh-hHHHHhcccC
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLP-IVTDVFNSAQ 254 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 254 (666)
..++++++.|.+++|.+++++.+++.+.+.++++.|+|.+++.+......+.+..... .....+.+.+ .+..++.++.
T Consensus 4 ~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~-~~~~~~~geGP~l~av~~~g~ 82 (509)
T PRK05022 4 DALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDV-LGRRFALEEHPRLEAILRAGD 82 (509)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHh-hCCccCCCcchHHHHHHhcCC
Confidence 4689999999999999999999999999999999999999886433333223322222 1223444443 6677887788
Q ss_pred ceEccCCCcchhhh-cc-c-cccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHH
Q 005974 255 AMRLPYNCPLARIR-LL-V-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVV 331 (666)
Q Consensus 255 ~~~l~~~~~~~~~~-~~-~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~v 331 (666)
++.+++....+.+- .. . .....+.++.+++|| ..++..+|++.++...+..|++.+.+++..+
T Consensus 83 ~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL--------------~~~~~~~GvL~l~~~~~~~f~~~~~~~l~~~ 148 (509)
T PRK05022 83 PVRFPADSELPDPYDGLIPGVQESLPVHDCMGLPL--------------FVDGRLIGALTLDALDPGQFDAFSDEELRAL 148 (509)
T ss_pred eEEEecCCCCCcccccccccccccCCcceEEEEEE--------------EECCEEEEEEEEeeCCCCcCCHHHHHHHHHH
Confidence 88888665443321 00 1 122335567888885 3455679999999988889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 332 ADQVAVALSHAAILEDSMRARNQLM 356 (666)
Q Consensus 332 a~~~a~al~~a~l~~~~~~~~~~L~ 356 (666)
|.+++.++.+++.+++.++..+++.
T Consensus 149 a~~~a~Al~~a~~~~~l~~~~~~~~ 173 (509)
T PRK05022 149 AALAAATLRNALLIEQLESQAELPQ 173 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777655444433
No 79
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.44 E-value=9.1e-06 Score=85.59 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=130.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEE--EEeeccccccCcccccCChhHHHHhcccCc
Q 005974 178 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQIQIGSSVPINLPIVTDVFNSAQA 255 (666)
Q Consensus 178 l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 255 (666)
++++-+...+..++.+-|+.+++++......+.|+||+.+.++..+++ +.+++....+...+..+.+.++.+....++
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 667777788999999999999999999999999999999988865554 455555555556677789999999999999
Q ss_pred eEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHH
Q 005974 256 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 335 (666)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~ 335 (666)
+-+.+.+..++|++.....+..-++-+.+|+++. ...+||+++.+...|.+.+.|.+++.++|-++
T Consensus 85 lNLsdAqsHPsF~Y~petgEE~Y~sFLGvPIi~~--------------~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~l 150 (756)
T COG3605 85 LNLADAQSHPSFKYLPETGEERYHSFLGVPIIRR--------------GRLLGVLVVQQRELRQYDEDEVEFLVTLAMQL 150 (756)
T ss_pred CChhhhhhCCccccccccchHHHHHhhccceeec--------------CceeEEEEEecccccccchHHHHHHHHHHHHH
Confidence 9999999999999776666666677777776543 45699999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005974 336 AVALSHAAIL 345 (666)
Q Consensus 336 a~al~~a~l~ 345 (666)
|..++++.+.
T Consensus 151 A~iva~~el~ 160 (756)
T COG3605 151 AEIVAQSQLT 160 (756)
T ss_pred HHHHHhhhhh
Confidence 9999998876
No 80
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.34 E-value=2.8e-06 Score=86.98 Aligned_cols=116 Identities=21% Similarity=0.361 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g~----v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
-...|.+++.+|++|++++++..+ |.+.+...+.+ ++++.|.|||+|||++.++++|
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d-------------------~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKD-------------------HYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCc-------------------eEEEEEecCCCCCChhHhHHHH
Confidence 345799999999999999997533 44555444322 5899999999999999999999
Q ss_pred ccccccCCC--CCCC-CCccchHHHHHHHHHHhCCE-EEEEecCCCCceEEEEEEEecCCCCC
Q 005974 564 TKFAQSRGS--SCQT-PRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTVTFLVKLGICNNP 622 (666)
Q Consensus 564 ~~f~~~~~~--~~~~-~g~GlGL~i~k~iv~~~gG~-I~v~S~~~g~Gt~~~i~lP~~~~~~~ 622 (666)
-+++-++.. ..++ +-.|+|.+.|--..++.-|+ +.|.|...+.++...+.+-+......
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNE 156 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNE 156 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCc
Confidence 766443222 1111 24689999999899999888 88887745558888888888766543
No 81
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.30 E-value=1.5e-05 Score=71.09 Aligned_cols=144 Identities=23% Similarity=0.276 Sum_probs=98.3
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEEccCCC-CCeEEEEEeeccc-cccCcccccCChhHHHHhcccCceEccCCCcchhh
Q 005974 190 DRHTILKTTLVELGRTLGLEECALWMPSRT-GLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 267 (666)
Q Consensus 190 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 267 (666)
|.+++++.++..+.+.+++++++|++.+++ ..........+.. ......++...+....++.+++++.+++.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 467889999999999999999999999873 3333333222221 12234456666888899999988888765543311
Q ss_pred hccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 005974 268 RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHAAILE 346 (666)
Q Consensus 268 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~va~~~a~al~~a~l~~ 346 (666)
.........+..+.+.+|+. .++..+|++.+... .++.|+.++++++..++++++.++++.++.+
T Consensus 81 ~~~~~~~~~~~~s~~~~Pl~--------------~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 81 ALDLLGRYQGVRSFLAVPLV--------------ADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred ccccccceeceeeEEEeeee--------------ecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10011111124566677753 24456788887776 7889999999999999999999998877654
Q ss_pred H
Q 005974 347 D 347 (666)
Q Consensus 347 ~ 347 (666)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 3
No 82
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.30 E-value=4.5e-06 Score=63.98 Aligned_cols=63 Identities=44% Similarity=0.682 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 438 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 438 (666)
+.++.+.++||+||||+.|.++++.+.+...+++...+++.+.+.++++..++++++++++.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999988766666668899999999999999999999998865
No 83
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.28 E-value=5.3e-06 Score=73.42 Aligned_cols=93 Identities=28% Similarity=0.342 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...+..++.+++.||++|+.. +.+.+.+....+ .+.++|.|+|.|+++.....-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~--------------------~l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD--------------------RLRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC--------------------EEEEEEEECCCCCChhhccCcc
Confidence 4567888999999999999975 345454444333 3999999999999887543221
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 613 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~ 613 (666)
..-. ......|+||.+++++++.. .+ +. ++|++++++
T Consensus 88 ~~~~------~~~~~~G~Gl~li~~l~D~~----~~-~~--~~gn~v~l~ 124 (125)
T PF13581_consen 88 PWEP------DSLREGGRGLFLIRSLMDEV----DY-RE--DGGNTVTLR 124 (125)
T ss_pred cccC------CCCCCCCcCHHHHHHHHcEE----EE-EC--CCeEEEEEE
Confidence 1000 12246799999999999885 44 33 679988875
No 84
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.21 E-value=1.2e-05 Score=73.04 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=90.0
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcc--cccCC--h-------hHHHHhcccCceE
Q 005974 189 LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPINL--P-------IVTDVFNSAQAMR 257 (666)
Q Consensus 189 ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-------~~~~v~~~~~~~~ 257 (666)
.+.+++++.+++.+.+..+++.++||+.|+++.....++........... .+... . ....++.+++++.
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 36789999999999999999999999998887555555544433222211 12211 1 1122388899999
Q ss_pred cc-CCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHH
Q 005974 258 LP-YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 336 (666)
Q Consensus 258 l~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a 336 (666)
++ +..... ........+..+.+.+||. .++..+|++.+.+..++.|+++++++++.+|++++
T Consensus 82 ~~~~~~~~~---~~~~~~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a 144 (148)
T PF13185_consen 82 INDDDSSFP---PWELARHPGIRSILCVPLR--------------SGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIA 144 (148)
T ss_dssp ESCCCGGGS---TTHHHCCTT-SEEEEEEEE--------------ETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHH
T ss_pred EeCcccccc---chhhhccccCCEEEEEEEe--------------ECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHH
Confidence 88 221111 1234556778888899964 34467999999998889999999999999999999
Q ss_pred HHHH
Q 005974 337 VALS 340 (666)
Q Consensus 337 ~al~ 340 (666)
++|+
T Consensus 145 ~aie 148 (148)
T PF13185_consen 145 IAIE 148 (148)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9984
No 85
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=4.6e-05 Score=78.76 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhcccccc
Q 005974 490 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 569 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 569 (666)
..+.+++.||+.||+++.. ..+.+.+.. ++ ...++|.|||.||++++++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~~-------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--GG-------------------LKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--CC-------------------EEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4578999999999999754 556555532 21 2569999999999999999999999997
Q ss_pred CCCCC-------CCCCccchHHHHHHHHHHhCCEEEEEecC-CCCceEEEEE
Q 005974 570 RGSSC-------QTPRAGLGLAICRRFVNLMGGHIWLDSEG-LDKGSTVTFL 613 (666)
Q Consensus 570 ~~~~~-------~~~g~GlGL~i~k~iv~~~gG~I~v~S~~-~g~Gt~~~i~ 613 (666)
+.... ..+-.|.||+....+ +++++.|.. .+.+..+.+.
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred CCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 65431 011236676655433 368888862 1344444443
No 86
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.93 E-value=0.00013 Score=65.89 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHhhccCC-----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKE-----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 562 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~-----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 562 (666)
+..++.-++.+++.|+++|+.+ |.+.+.+....+. +.+.|.|.|+|++ ..+..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~--------------------~~i~i~D~G~~~~--~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK--------------------LEIRIWDQGPGIE--DLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe--------------------EEEEEEeCCCCCC--CHHHh
Confidence 7788999999999999999965 6677776665443 9999999996654 45556
Q ss_pred hccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCC
Q 005974 563 FTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 606 (666)
Q Consensus 563 f~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~ 606 (666)
+.+.+...+.. ...|+||.+++++++ ++.++++ .+.
T Consensus 95 ~~~~~~~~~~~---~~~G~Gl~l~~~~~D----~~~~~~~-~~~ 130 (146)
T COG2172 95 LGPGDTTAEGL---QEGGLGLFLAKRLMD----EFSYERS-EDG 130 (146)
T ss_pred cCCCCCCCccc---ccccccHHHHhhhhe----eEEEEec-cCC
Confidence 66664433222 245999999998775 4788865 344
No 87
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.89 E-value=7.9e-05 Score=56.52 Aligned_cols=61 Identities=39% Similarity=0.535 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSR 436 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~ 436 (666)
+..+...++||++||++.+.+.++.+.+... .++....++.+.+.++++..++++++++++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999999998886533 566778899999999999999999988763
No 88
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.68 E-value=0.0013 Score=69.18 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccc--ccCcccccCChhHHHHhcc
Q 005974 175 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFNS 252 (666)
Q Consensus 175 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~ 252 (666)
.+.+.+++..+....+.++.+..+.+.+...++++.+++..++.++.....+.+..... ..........+.+.+++.+
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 45688888888888899999999999999999999999999998874444444433331 1223556678899999999
Q ss_pred cCceEc-cCCCcchhhhcc---ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHH
Q 005974 253 AQAMRL-PYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 328 (666)
Q Consensus 253 ~~~~~l-~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll 328 (666)
+.++++ +.++... -.+. ......+.++.+.+| +..|+..+|++.+....+..++..-.+.+
T Consensus 113 ~~p~~~~~~d~~~~-~~~~~l~~~~~~~~~~a~i~~P--------------L~~~~~~~G~Ltld~~~~~~f~~~~~~~l 177 (550)
T COG3604 113 GRPLVFHPADSLFP-DPYDGLLPDTEGNKKHACIGVP--------------LKSGDKLIGALTLDHTEPDQFDEDLDEEL 177 (550)
T ss_pred CCcEEEecCCcccC-CcccccccCccCCcceeEEeee--------------eeeCCeeeeeEEeeeecccccchhHHHHH
Confidence 999998 3333322 1111 112222356777777 56677789999999888778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 329 DVVADQVAVALSHAAILEDSMRARNQLMEQNVALD 363 (666)
Q Consensus 329 ~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~ 363 (666)
..++..++.+..++.+.++..+.++++.+++.+++
T Consensus 178 r~La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~ 212 (550)
T COG3604 178 RFLAALAALAVANALLHRELSSLKERLEEENLALE 212 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999998888877777766555443
No 89
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.00024 Score=65.57 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCC--eEEEEEeecc---c-cccCccc-ccCChhHHH
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELSYTLNN---Q-IQIGSSV-PINLPIVTD 248 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~~~~~~---~-~~~~~~~-~~~~~~~~~ 248 (666)
..+..+++.+....+.+++++.+++.+.+.++.+.+.|+..+.+.. ...+...... . ....... +........
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T COG2203 4 ALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIGI 83 (175)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhhh
Confidence 4567788889999999999999999999999999999999887753 1111000000 0 0000000 111223445
Q ss_pred HhcccCceEccCCCcchhhhccccccCCC-CceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCC-ccchhhhH
Q 005974 249 VFNSAQAMRLPYNCPLARIRLLVGRYVPP-DIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELE 326 (666)
Q Consensus 249 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~~ 326 (666)
+...+....+.+................+ ..+.+.+|+. .++..+|++++...... .|++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vPl~--------------~~~~~~G~l~~~~~~~~~~~~~~e~~ 149 (175)
T COG2203 84 ALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVPLI--------------AQGELLGLLCVHDSEPRRQWSEEELE 149 (175)
T ss_pred hhcCCceEEeeccccCcccccCHHHHHHHHHHHheeeeee--------------ECCEeeEEeeeeccCCCCCCCHHHHH
Confidence 55666667776665555443211111111 3455566643 33356777777777655 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005974 327 LIDVVADQVAVALSHAAILED 347 (666)
Q Consensus 327 ll~~va~~~a~al~~a~l~~~ 347 (666)
+++.+|.++++++.+++++++
T Consensus 150 ll~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 150 LLEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877765
No 90
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.34 E-value=0.00079 Score=75.99 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
.+..++.+||.||+++. +..|.|.+. +++ ...|+|.|||.||++++++.+|.++.+++
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~--~~g-------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE--EGG-------------------LKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE--eCC-------------------eEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 57789999999999955 566666663 222 26899999999999999999999988776
Q ss_pred CCCC------CCCC-ccchHHHHHHHHHHhCCEEEEEec
Q 005974 571 GSSC------QTPR-AGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 571 ~~~~------~~~g-~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
-... ...| .|-||+.+..+ .++++.|.
T Consensus 80 i~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~ 113 (617)
T PRK00095 80 IASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSR 113 (617)
T ss_pred CCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEe
Confidence 4321 1112 45666655543 46888876
No 91
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.33 E-value=7.2e-05 Score=67.22 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCC
Q 005974 493 MQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 572 (666)
Q Consensus 493 ~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 572 (666)
..++.+||.||+++. ...|.|.+...+... -.|.|.|||.||+++++...|....+.+..
T Consensus 4 ~~al~ElI~Ns~DA~-a~~I~I~i~~~~~~~-------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~ 63 (137)
T PF13589_consen 4 EDALRELIDNSIDAG-ATNIKISIDEDKKGE-------------------RYIVIEDNGEGMSREDLESFFRIGRSSKKS 63 (137)
T ss_dssp THHHHHHHHHHHHHH-HHHEEEEEEEETTTT-------------------TEEEEEESSS---HHHHHHHTTCHHTHHHH
T ss_pred HHHHHHHHHHHHHcc-CCEEEEEEEcCCCCC-------------------cEEEEEECCcCCCHHHHHHhccccCCCCCc
Confidence 468999999999965 345777776653221 478999999999999999988766665431
Q ss_pred ---CCCCCCccch--HHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 005974 573 ---SCQTPRAGLG--LAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 573 ---~~~~~g~GlG--L~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
.......|+| +++. .++.++.+.|...+....+++..+..
T Consensus 64 ~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~~ 108 (137)
T PF13589_consen 64 EKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDWI 108 (137)
T ss_dssp HHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred hhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEecc
Confidence 1111234666 3332 46788999998555566777776643
No 92
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.30 E-value=0.0088 Score=69.12 Aligned_cols=144 Identities=14% Similarity=0.060 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEE-eeccccccCccccc-CChhHHHHhcc--
Q 005974 177 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNNQIQIGSSVPI-NLPIVTDVFNS-- 252 (666)
Q Consensus 177 ~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~v~~~-- 252 (666)
.+..+++.+....+..++.+.+++.+.+..+.+.++|+.+++++..+.... ...........+.+ .......++.+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p~~~a~~~~~ 368 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGPAAAALQSVV 368 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCchHHHHHhcc
Confidence 456778888888899999999999999999999999999988776653332 22211111111111 12223444444
Q ss_pred cCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHH
Q 005974 253 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 332 (666)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va 332 (666)
+....+.+........ .....+.+.+| +..++..+|++.++...++.|+++++++++.+|
T Consensus 369 ~~~~~~~~~~~~~~~~------~~~~~s~~~vP--------------L~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSG------TVDGSAVAAVP--------------LVYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccc------ccCCceEEEEe--------------EEECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 4444444322211100 01112667777 455667799999999999999999999999999
Q ss_pred HHHHHHHH
Q 005974 333 DQVAVALS 340 (666)
Q Consensus 333 ~~~a~al~ 340 (666)
.+++.+|.
T Consensus 429 ~~ia~aI~ 436 (665)
T PRK13558 429 RAVGAAIN 436 (665)
T ss_pred HHHHHHHH
Confidence 99999994
No 93
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.17 E-value=0.011 Score=66.85 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhh-----
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 561 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~----- 561 (666)
+...+.+++.++|.||++.+..| .-.|.+....+ -.|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d---------------------g~I~V~DnGrGIP~~~~~~~~~~~ 92 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD---------------------GSVSVRDNGRGIPVGIHPEEGKSG 92 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC---------------------CcEEEEEcCCCCCcccccccCCcc
Confidence 45679999999999999976543 22333333322 1688999999999998877
Q ss_pred ---hhccccccCCCCC----CCCC-ccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 562 ---LFTKFAQSRGSSC----QTPR-AGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 562 ---if~~f~~~~~~~~----~~~g-~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+|.....+..-.+ ...| .|.|++.+..+-+. +.+++. . .|..+...+.
T Consensus 93 ~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~V~s~-r-~g~~~~~~f~ 148 (631)
T PRK05559 93 VEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LEVEVK-R-DGKVYRQRFE 148 (631)
T ss_pred hheeeeeccccCccCCccccccCcccccchhhhhhheee----EEEEEE-e-CCeEEEEEEE
Confidence 7766433221111 1122 68999988877543 455554 2 2333444443
No 94
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=95.83 E-value=0.023 Score=64.25 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhh---
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL--- 561 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~--- 561 (666)
+..-+.+++.+||.||++...+| .|.|.+. .++ .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~--~~g---------------------~I~V~DnG~GIp~~~h~~~ki 90 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN--EDG---------------------SITVTDNGRGIPVDIHPKTGK 90 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe--CCC---------------------cEEEEEeCccccCCccCCCCC
Confidence 45678999999999999955444 4444443 221 689999999999874332
Q ss_pred -----hhccccccCCCCC-----CCCCccchHHHHHHHHH
Q 005974 562 -----LFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 591 (666)
Q Consensus 562 -----if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 591 (666)
+|.....+..-.+ ...-.|.|++.+..+-+
T Consensus 91 ~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 91 PAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred CchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 4433322111110 11135889988877665
No 95
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=95.80 E-value=0.49 Score=44.26 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=90.1
Q ss_pred HHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEcc------CC-C-CCeEEEEEeeccccc
Q 005974 163 REMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMP------SR-T-GLNLELSYTLNNQIQ 234 (666)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~------~~-~-~~~~~~~~~~~~~~~ 234 (666)
|.+..+.+..+=++.+-..+..|-+..+.++....++.++...++.+..+++.. +. + +....++....-...
T Consensus 9 rdi~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~~ 88 (174)
T PF11849_consen 9 RDIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFESL 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchhh
Confidence 344444555555666777788888899999999999999999999998877761 11 1 112333333332222
Q ss_pred cCcccc-cCC----hhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEE
Q 005974 235 IGSSVP-INL----PIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMV 309 (666)
Q Consensus 235 ~~~~~~-~~~----~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v 309 (666)
.+..+. ... ..+.+++.++....-++ ...+. ++.....-++
T Consensus 89 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~------------------~~~ly----------------~~~~~g~~~~ 134 (174)
T PF11849_consen 89 IGQPLDDLLPPEIRAALQQALSSKRSIFEED------------------HFVLY----------------FPSSSGRESL 134 (174)
T ss_pred cCCcccccCCHHHHHHHHHHHHcCCeEecCC------------------eEEEE----------------EecCCCCEEE
Confidence 122111 122 22344444443333111 11111 1111222345
Q ss_pred EEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 310 LMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 349 (666)
Q Consensus 310 l~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~ 349 (666)
+++... +..++.+.++++..+..++++++|..++++..
T Consensus 135 iyl~~~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 135 IYLEGD--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred EEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544 58999999999999999999999999988764
No 96
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.0084 Score=67.61 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
+..-|+.+|++||+++.. ..|.+..++++ .-.|.|+|||+||++++++-.+.++.++|
T Consensus 23 rPaSVVKELVENSlDAGA---t~I~I~ve~gG-------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA---TRIDIEVEGGG-------------------LKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC---CEEEEEEccCC-------------------ccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 456799999999998654 34444444443 13599999999999999999999999887
Q ss_pred CC
Q 005974 571 GS 572 (666)
Q Consensus 571 ~~ 572 (666)
-.
T Consensus 81 I~ 82 (638)
T COG0323 81 IA 82 (638)
T ss_pred CC
Confidence 54
No 97
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=95.51 E-value=0.18 Score=39.89 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=58.1
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHH
Q 005974 383 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 462 (666)
Q Consensus 383 isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 462 (666)
++|.+||-|+.|.+++.+-.....+++.+..+..+......+..+-+.|.. .-....+++.+++++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~---------~~~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQ---------SEDLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCeecHHHHHHHHHHHH
Confidence 689999999999999999888888888888888888888877766665532 11335799999999998876
Q ss_pred H
Q 005974 463 K 463 (666)
Q Consensus 463 ~ 463 (666)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 5
No 98
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=95.36 E-value=0.31 Score=45.62 Aligned_cols=126 Identities=11% Similarity=0.023 Sum_probs=91.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhh
Q 005974 188 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 267 (666)
Q Consensus 188 ~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 267 (666)
..+..+.++.+++.+.+.+++ .++| ++..-.++|.......+... + -.....+++.+++.....+.... .+
T Consensus 51 ~~~~~~~A~~~aeII~~~t~~-aVaI-----TDr~~ILA~~G~g~d~~~~~-~-is~~t~~~i~~gk~~~~~~~~~~-~i 121 (180)
T TIGR02851 51 IGELGDFAKEYAESLYQSLGH-IVLI-----TDRDTVIAVAGVSKKEYLNK-P-ISDELEDTMEERKTVILSDTKDG-PI 121 (180)
T ss_pred ccchHHHHHHHHHHHHHHhCC-EEEE-----ECCCcEEEEECCChhhcCCC-c-cCHHHHHHHHcCCEEEecCCccc-ee
Confidence 346778888999999999999 8888 66777777776665444444 5 67788999999999888754310 01
Q ss_pred hcccc-ccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCC--ccchhhhHHHHHHHHHHHHHH
Q 005974 268 RLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR--KWRDHELELIDVVADQVAVAL 339 (666)
Q Consensus 268 ~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~--~~~~~e~~ll~~va~~~a~al 339 (666)
.+. ...++..+++.+|+.. ++..+|.+.+. ...+ .+++.+.++...+|..++..+
T Consensus 122 --~c~~~~~~~l~s~ii~Pl~~--------------~g~viGtLkly-~k~~~~~~~~~e~~la~glA~lLS~QL 179 (180)
T TIGR02851 122 --EIIDGQEFEYTSQVIAPIIA--------------EGDPIGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQM 179 (180)
T ss_pred --ccccCCCCCcceEEEEEEEE--------------CCeEEEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhh
Confidence 122 4455678899999643 33458877777 5555 889999999999998887655
No 99
>PRK14083 HSP90 family protein; Provisional
Probab=95.21 E-value=0.01 Score=66.28 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhccCC---------CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 494 QTILNIVGNAVKFTKE---------GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 494 ~vl~nLl~NAik~~~~---------g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
..+.+|+.||.++... +.|.+.+. ..+. -.++|+|||.||+.+++.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~--------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG--------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC--------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 4678999999988542 24444442 2211 578999999999999988765
No 100
>PRK05218 heat shock protein 90; Provisional
Probab=94.79 E-value=0.082 Score=59.65 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=33.4
Q ss_pred EEEEeecCCCCCCCChhhhhccccccC-----------C--CCCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 544 RVQVNDSGCGVPPQDIPLLFTKFAQSR-----------G--SSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 544 ~i~V~D~G~Gi~~~~~~~if~~f~~~~-----------~--~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
.|+|+|||.||+.+++...|...-++. . ...-.+-.|+|+.-|-. .+-++.|.|.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~----va~~v~V~Sr 141 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM----VADKVTVITR 141 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh----ccCEEEEEEc
Confidence 589999999999999887654332221 0 11112246888864332 3446777765
No 101
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.68 E-value=0.027 Score=63.72 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.6
Q ss_pred EEEEEeecCCCCCCCChhhh
Q 005974 543 LRVQVNDSGCGVPPQDIPLL 562 (666)
Q Consensus 543 l~i~V~D~G~Gi~~~~~~~i 562 (666)
..++|.|||+||+.+++.+-
T Consensus 72 ~~L~I~DnGiGMt~edl~~~ 91 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNN 91 (701)
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 47899999999999886543
No 102
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.48 E-value=0.21 Score=57.06 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh----
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP---- 560 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~---- 560 (666)
++.-+.+++.+||.||++...+| .|.|.+ ..++ .|+|.|||+|||.+..+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i--~~~g---------------------~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI--NDDG---------------------SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE--eCCC---------------------cEEEEEeCCCcCccccCcCCC
Confidence 45679999999999999954444 444444 3222 38999999999986432
Q ss_pred ----hhhccccccCCCCC----CCC-CccchHHHHHHHHH
Q 005974 561 ----LLFTKFAQSRGSSC----QTP-RAGLGLAICRRFVN 591 (666)
Q Consensus 561 ----~if~~f~~~~~~~~----~~~-g~GlGL~i~k~iv~ 591 (666)
.+|.....+....+ ... -.|.||+.+..+-+
T Consensus 84 ~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred CchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 23332221111100 111 26889888776654
No 103
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.064 Score=58.83 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh
Q 005974 495 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 495 vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 559 (666)
-+++||+||.++.. ++...|.+...++. =+++|+|||+||..+++
T Consensus 31 FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~--------------------kTLtI~DNGIGMT~~Ev 90 (623)
T COG0326 31 FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN--------------------KTLTISDNGIGMTKDEV 90 (623)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC--------------------CEEEEEeCCCCCCHHHH
Confidence 36789999988641 12355555554443 37899999999998775
Q ss_pred h
Q 005974 560 P 560 (666)
Q Consensus 560 ~ 560 (666)
.
T Consensus 91 ~ 91 (623)
T COG0326 91 I 91 (623)
T ss_pred H
Confidence 3
No 104
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=93.89 E-value=2.7 Score=37.85 Aligned_cols=127 Identities=10% Similarity=0.088 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHHhhcC-CCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhhh
Q 005974 190 DRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIR 268 (666)
Q Consensus 190 d~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~ 268 (666)
+...-+..+...+.+.++ .+-+.+|+.+ +..+.+.--.+ ...-..+|.+.+.++.+..+++.+++.+....+-
T Consensus 32 ~~ianlan~sall~~~l~~~nW~GFYl~~--~~~LvLgPFqG--~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~g-- 105 (163)
T COG1956 32 NFIANLANASALLKERLPDVNWVGFYLLE--GDELVLGPFQG--KVACVRIPFGKGVCGTAAATGETVRVDDVHAFPG-- 105 (163)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEEec--CCeEEEecccC--CcceEEeccCcchhHHHHhcCCeEEecccccCCC--
Confidence 333344444444555443 7778888887 33333321111 1333477889999999999999999998776542
Q ss_pred ccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHH
Q 005974 269 LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVA 338 (666)
Q Consensus 269 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~a 338 (666)
...-.+...+.+.+|+. .++..+|++=+.+.....|++.+...++.++..++-.
T Consensus 106 --hiaCD~as~SEIVvPi~--------------~~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 106 --HIACDAASNSEIVVPIF--------------KDGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred --ccccccccCceEEEEEE--------------ECCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 11222445677888854 3556799999999999999999999999988876543
No 105
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=93.60 E-value=0.66 Score=45.46 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhh----hhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEee
Q 005974 154 LKNRADELDREMGL----ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL 229 (666)
Q Consensus 154 ~~~~a~~l~~~~~~----~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~ 229 (666)
++++.++++.+.+. .++.+.....+..++..+-...+.++++......+.+.++++.+.+++.+.........
T Consensus 52 LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~~--- 128 (225)
T PF04340_consen 52 LRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPSL--- 128 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccch---
Confidence 34445555555444 44445556678889999999999999999999999999999999999987544421100
Q ss_pred ccccccCcccccCChhHHHH----hcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccc
Q 005974 230 NNQIQIGSSVPINLPIVTDV----FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSY 305 (666)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~v----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~ 305 (666)
.. .+.........+ +..+.+..-+........- -.....+..+.-.+||. .+.
T Consensus 129 ~~------~~~~~~~~~~~~~~~~l~~~~p~~G~~~~~~~~~l--F~~~~~~v~S~AlipL~---------------~~~ 185 (225)
T PF04340_consen 129 TD------HVWLSRDAFAQVFIDLLGLQQPYCGRLSEEEAALL--FGDEAAQVGSVALIPLG---------------SGR 185 (225)
T ss_dssp -----------E-HHHHHHHHCCCHTT---CCCS--HHHHHHH--HHHCHCC-SEEEEEEEE---------------SSS
T ss_pred hh------cccccHHHHHHHHHHHhCCCCceeCCCCcchhHHh--cCCCCccccchheeecc---------------CCC
Confidence 00 000001111111 1111111111110000000 00122334455555642 334
Q ss_pred eEEEEEeeCCCCCccchh-hhHHHHHHHHHHHHHHH
Q 005974 306 AVMVLMLPTDGGRKWRDH-ELELIDVVADQVAVALS 340 (666)
Q Consensus 306 ~~~vl~~~~~~~~~~~~~-e~~ll~~va~~~a~al~ 340 (666)
.+|++++.+..+..|+++ ...+++.+|..++.++.
T Consensus 186 ~~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~ 221 (225)
T PF04340_consen 186 PIGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALE 221 (225)
T ss_dssp EEEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGG
T ss_pred ceEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHh
Confidence 588888888776667655 68899999999888774
No 106
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.54 E-value=0.21 Score=56.44 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhh---ccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC--------h
Q 005974 491 RLMQTILNIVGNAVK---FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD--------I 559 (666)
Q Consensus 491 ~l~~vl~nLl~NAik---~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~--------~ 559 (666)
.+.+++.+||.||++ +.....|.|.+. .+ -.|+|.|||.|||.+. .
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~--~d---------------------~~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGFASIIMVILH--QD---------------------QSIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred CcceeehhhhhcccchhhcCCCCEEEEEEe--CC---------------------CeEEEEecCCccCcccccccCCcHH
Confidence 457889999999999 433444555543 22 2689999999999988 6
Q ss_pred hhhh-ccccccCCCCC---CCC-CccchHHHHHHHHHH
Q 005974 560 PLLF-TKFAQSRGSSC---QTP-RAGLGLAICRRFVNL 592 (666)
Q Consensus 560 ~~if-~~f~~~~~~~~---~~~-g~GlGL~i~k~iv~~ 592 (666)
+-+| ...-+++-... ... -.|.|++.+..+-+.
T Consensus 87 e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 87 EVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred HHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 6666 33222221110 111 268999998887764
No 107
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=6 Score=35.67 Aligned_cols=192 Identities=14% Similarity=0.107 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHH
Q 005974 379 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 458 (666)
Q Consensus 379 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 458 (666)
+.+.+.||+-.|..+|..-+++|.+...+++. ++.|+.++..+.. .+.|.|+.-|..-..-..+|-.+.=+-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addDA---m~LIrsSArnas~----rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDDA---MDLIRSSARNASV----RLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHHH---HHHHHHHhhhHHH----HHHHHHHHhcccccccccccchhHHHHH
Confidence 56678999999999999999999987666443 4556665555443 4567776544333222345544433222
Q ss_pred HHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc-EEEEEEeecCCCCCCCCCCCCCccCC
Q 005974 459 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVST 537 (666)
Q Consensus 459 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-v~i~~~~~~~~~~~~~~~~~~~~~~~ 537 (666)
.+. +...+-+++.+.+... + ...+ ...+.||+.-|-..-+.|+ +.+.+.....+
T Consensus 91 ~~~----~a~ekpe~~W~g~r~~---~--~Kn~-vkllLNl~lia~~aiPrGG~~~vtle~~e~d--------------- 145 (214)
T COG5385 91 QDF----FANEKPELTWNGPRAI---L--PKNR-VKLLLNLFLIAYGAIPRGGSLVVTLENPETD--------------- 145 (214)
T ss_pred HHH----HhccCCcccccCChhh---c--Ccch-HHHHHHHHHHHcccCCCCCeeEEEeecCCcC---------------
Confidence 222 2233344554333221 1 2222 2456777777776767654 33333322222
Q ss_pred CCceEEEEEEeecCCC--CCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 005974 538 DGHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 614 (666)
Q Consensus 538 ~~~~~l~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~l 614 (666)
-+|+|.-.|+= .||+.++ -. ...+....-.+...-=+...-+++.-|++|.++.. +.-..|+-.+
T Consensus 146 -----~rfsi~akG~m~Rvppk~le----l~-~G~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~--~e~iv~~A~v 212 (214)
T COG5385 146 -----ARFSIIAKGRMMRVPPKFLE----LH-SGEPPEEAVDAHSVQPYYTLLLAEEAGMTISVHAT--AERIVFTAWV 212 (214)
T ss_pred -----ceEEEEecCccccCCHHHHh----hh-cCCCccccCCCccccHHHHHHHHHHcCCeEEEEec--cceEEEEEec
Confidence 35666656653 2333222 11 11111111123344456667788999999999987 4455555443
No 108
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.22 E-value=0.16 Score=44.30 Aligned_cols=49 Identities=22% Similarity=0.172 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh
Q 005974 492 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 560 (666)
Q Consensus 492 l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 560 (666)
+.-+..+|++||+||...|.+++.....+.. +++.|.+.-.+=...+.+
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~s~~--------------------f~~kvsN~vd~~t~~~f~ 112 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLYSHK--------------------FIFKVSNIVDLPTTIDFE 112 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEeccce--------------------EEEEecccCCCccHHHHH
Confidence 4557789999999999999888887766543 788887765554433333
No 109
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=93.22 E-value=7.5 Score=36.54 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcCCce
Q 005974 393 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 472 (666)
Q Consensus 393 ~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 472 (666)
+|.+-+++|.++..+++. ..++.|.+++..+..-+ .|.|+--|.... .+.++..+.-+-+..++ +..+++
T Consensus 3 AI~NGLELL~~~~~~~~~-~~~~LI~~Sa~~A~aRl----~F~RlAFGaag~-~~~i~~~e~~~~~~~~~----~~~r~~ 72 (182)
T PF10090_consen 3 AINNGLELLDDEGDPEMR-PAMELIRESARNASARL----RFFRLAFGAAGS-GQQIDLGEARSVLRGYF----AGGRIT 72 (182)
T ss_pred chhhhHHHHcCCCCccch-HHHHHHHHHHHHHHHHH----HHHHHHcCCCCC-CCCCCHHHHHHHHHHHH----hCCceE
Confidence 577788888876553333 37888888888776654 455544333322 35677766544444443 344555
Q ss_pred EEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecC
Q 005974 473 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 551 (666)
Q Consensus 473 ~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G 551 (666)
+....+.+. . + ...-+++.|++-=+....+. |.+.+......+. ..++|.=+|
T Consensus 73 l~W~~~~~~---~--~-k~~vklllnl~l~a~~alprGG~i~V~~~~~~~~--------------------~~~~v~a~G 126 (182)
T PF10090_consen 73 LDWQVERDL---L--P-KPEVKLLLNLLLCAEDALPRGGEITVSIEGSEGD--------------------GGWRVRAEG 126 (182)
T ss_pred EEccCcccc---C--C-HHHHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC--------------------ceEEEEEec
Confidence 555443331 1 2 22337788888877777765 5566654433332 466677777
Q ss_pred CCCC--CCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 552 CGVP--PQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 552 ~Gi~--~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
..+. ++...-+ . . ......-.....=.+....+++..|++|.++..
T Consensus 127 ~~~~~~~~~~~~L-~---g-~~~~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 127 PRARLDPDLWAAL-A---G-EDPEEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred cccCCCHHHHHHh-c---C-CCCCCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 6543 3322222 1 1 111111123345678889999999999999886
No 110
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=92.95 E-value=0.12 Score=58.28 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh--------hh
Q 005974 492 LMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP--------LL 562 (666)
Q Consensus 492 l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~--------~i 562 (666)
|.+++.+||.||++....| .-.|.+....++ .|+|.|||.|||.+..+ -+
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~~~~~~~~e~v 60 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN---------------------SISVEDNGRGIPVEIHPKEKKYAPEVI 60 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC---------------------eEEEEEeCCceeCCccCcCCCCcHHHh
Confidence 3467889999999987443 222333322221 68999999999976543 23
Q ss_pred hccccccCCCCC-----CCCCccchHHHHHHHH
Q 005974 563 FTKFAQSRGSSC-----QTPRAGLGLAICRRFV 590 (666)
Q Consensus 563 f~~f~~~~~~~~-----~~~g~GlGL~i~k~iv 590 (666)
|.....+..-.+ ..+-.|.|++.+..+-
T Consensus 61 ~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 61 FTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred hhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 333322211111 1113588998887663
No 111
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=92.59 E-value=0.36 Score=55.34 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 490 KRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.-|.+++.++++||++-.-+| .-.|.+....++ .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg---------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG---------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCCC---------------------eEEEEEcCCcccCCc
Confidence 568999999999999955444 223333332221 689999999999873
No 112
>PTZ00130 heat shock protein 90; Provisional
Probab=92.52 E-value=0.13 Score=58.62 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.3
Q ss_pred EEEEeecCCCCCCCChhh
Q 005974 544 RVQVNDSGCGVPPQDIPL 561 (666)
Q Consensus 544 ~i~V~D~G~Gi~~~~~~~ 561 (666)
.|+|+|||.||+.+++..
T Consensus 136 tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLIN 153 (814)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 679999999999988643
No 113
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=90.30 E-value=9.6 Score=42.12 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc--cccCcccccCC--hhHHHHhcccCceEcc
Q 005974 184 EIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINL--PIVTDVFNSAQAMRLP 259 (666)
Q Consensus 184 ~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~l~ 259 (666)
.++++.+..+++..++++++++.|.|++.+|-+++++..-.++..-.+. ..-+...|.+| .-....+..+.-..++
T Consensus 141 ~lq~a~~l~~l~~~~tqeVr~~tGfDRVMlYrF~~d~~G~VIAEak~e~LesyLGl~yPaSDIP~qAR~LY~~N~lRlIp 220 (750)
T COG4251 141 RLQSAANLRDLLSRTTQEVRRMTGFDRVMLYRFDEDGSGEVIAEAKREDLESYLGLRYPASDIPQQARALYIQNPLRLIP 220 (750)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcCCceEEEEeecCCCCccEEeccccccchhhhcccCCcccCCHHHHHHHhcCceeecc
Confidence 6888999999999999999999999999999999988876666544432 23334444432 1223444444444555
Q ss_pred CCCc
Q 005974 260 YNCP 263 (666)
Q Consensus 260 ~~~~ 263 (666)
|.+.
T Consensus 221 D~~~ 224 (750)
T COG4251 221 DVSY 224 (750)
T ss_pred cccC
Confidence 5443
No 114
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=89.38 E-value=0.49 Score=50.91 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
+...++.+|++|++++.. ..|.+...+++ -=.+.|+|||.||..++++-+.++|.+++
T Consensus 27 RP~NAlKEliENSLDA~S---T~I~V~vk~GG-------------------LKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 27 RPVNALKELIENSLDANS---TSIDVLVKDGG-------------------LKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred chHHHHHHHHhccccCCC---ceEEEEEecCC-------------------eEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 455688999999997543 34444444443 13467889999999999999999998865
Q ss_pred C
Q 005974 571 G 571 (666)
Q Consensus 571 ~ 571 (666)
-
T Consensus 85 L 85 (694)
T KOG1979|consen 85 L 85 (694)
T ss_pred c
Confidence 3
No 115
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=87.72 E-value=0.67 Score=52.42 Aligned_cols=48 Identities=29% Similarity=0.438 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
++.-|.+++.++|.||++-..+| .|.|.+. .+ -.++|.|||.|||.+.
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~--~d---------------------gsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLH--KD---------------------NSITVQDDGRGIPTGI 81 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEc--CC---------------------CeEEEEECCCcccCcc
Confidence 45678899999999999865433 3444332 22 2689999999999754
No 116
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=87.51 E-value=0.64 Score=51.28 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCC
Q 005974 492 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 571 (666)
Q Consensus 492 l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 571 (666)
+.-++.+|++|+++... ..|.+.+ .+-+ .=.|+|+|||.||++.+.+-+-.++++++-
T Consensus 21 l~sAVKELvENSiDAGA-T~I~I~~--kdyG-------------------~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGA-TAIDIKV--KDYG-------------------SDSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred HHHHHHHHHhcCcccCC-ceeeEec--CCCC-------------------cceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 45789999999998543 3343333 3222 136899999999999998888777777654
No 117
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.35 E-value=3.9 Score=30.81 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005974 379 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTL 427 (666)
Q Consensus 379 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~l 427 (666)
.++..-||+.|-|+.|.|++++ ...++..+|++.+....+....+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455589999999999999875 33456677777776666655443
No 118
>PRK10963 hypothetical protein; Provisional
Probab=85.43 E-value=38 Score=33.01 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhh----hchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCC
Q 005974 154 LKNRADELDREMGLI----LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR 218 (666)
Q Consensus 154 ~~~~a~~l~~~~~~~----~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~ 218 (666)
++++..+++.+...+ ++.+...+.+..++..+-...+.++++.... .+.+.++++.+++++.++
T Consensus 49 LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~ 116 (223)
T PRK10963 49 QRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPD 116 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEecc
Confidence 455555555555443 3334445667888888888999999999986 689999999999998764
No 119
>PLN03237 DNA topoisomerase 2; Provisional
Probab=84.15 E-value=1.4 Score=53.73 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhcc-CC---CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh-----
Q 005974 490 KRLMQTILNIVGNAVKFT-KE---GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP----- 560 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~-~~---g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~----- 560 (666)
.-|.+++.++|.||++.. .+ ..+.|.+... + =.|+|.|||.|||-+..+
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~--~--------------------gsIsV~DnGRGIPV~iH~~eg~~ 133 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVE--Q--------------------NLISVYNNGDGVPVEIHQEEGVY 133 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcC--C--------------------CEEEEEecCccccCCCCCCCCCc
Confidence 447788888888888876 32 3333333322 1 268999999999976432
Q ss_pred ---hhhccccccCCCCC-----CCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 561 ---LLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 561 ---~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
-||....++..-.+ ..+-.|.|.+.|+-+-+.+--++. + ...|-.|.-++-
T Consensus 134 ~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev~---D-g~~gk~y~Q~f~ 192 (1465)
T PLN03237 134 VPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIETA---D-GKRQKKYKQVFS 192 (1465)
T ss_pred cceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEEE---E-CCCCeEEEEEEe
Confidence 23433333222111 112368898888776555433332 1 123555555554
No 120
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=83.56 E-value=1.4 Score=53.71 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhccC----CCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh----
Q 005974 490 KRLMQTILNIVGNAVKFTK----EGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP---- 560 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~----~g~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~---- 560 (666)
.-|.+++.++|.||++... .|. -.|.+....+. =.|+|.|||.|||-+..+
T Consensus 56 pGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~--------------------g~IsV~dnGrGIPv~~h~~~~~ 115 (1388)
T PTZ00108 56 PGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEEN--------------------GEISVYNDGEGIPVQIHKEHKI 115 (1388)
T ss_pred chhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccC--------------------CeEEEEecCCcccCCCCCCCCC
Confidence 3578888888888888654 222 33333333321 268999999999976532
Q ss_pred ----hhhccccccCCCCCC-----CCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 005974 561 ----LLFTKFAQSRGSSCQ-----TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 616 (666)
Q Consensus 561 ----~if~~f~~~~~~~~~-----~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~ 616 (666)
-+|....++..-.+. .+-.|.|...|+.+-+. +.++......|-.|..++--
T Consensus 116 ~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~----f~Vev~r~~~gk~y~q~f~~ 176 (1388)
T PTZ00108 116 YVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTK----FTVECVDSKSGKKFKMTWTD 176 (1388)
T ss_pred ccceEEEEEeeccccCCCCceeeecccccCCccccccccce----EEEEEEECCCCCEEEEEecC
Confidence 234333332222111 12358888877665544 44444311236666666653
No 121
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=79.66 E-value=1.3 Score=49.85 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhccCC---C-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh-----
Q 005974 490 KRLMQTILNIVGNAVKFTKE---G-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP----- 560 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~~---g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~----- 560 (666)
.-|.+++.++|.||++.... | .-.|.+... + =.++|.|||.|||-+..+
T Consensus 44 ~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-d---------------------gsisV~dnGrGIPv~~h~~~~g~ 101 (602)
T PHA02569 44 PGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-N---------------------NQVTVSDNGRGIPQAMVTTPEGE 101 (602)
T ss_pred ccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-C---------------------CEEEEEECCCcccCCcccccccc
Confidence 34666777777777776432 2 223333333 2 258999999999986542
Q ss_pred ------hhhccccccCCC----CCCCCCccchHHHHHHHHHHhC
Q 005974 561 ------LLFTKFAQSRGS----SCQTPRAGLGLAICRRFVNLMG 594 (666)
Q Consensus 561 ------~if~~f~~~~~~----~~~~~g~GlGL~i~k~iv~~~g 594 (666)
-+|........- .....-.|.|.+.++.+-+.+-
T Consensus 102 ~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 102 EIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred cccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 122222111111 1012247899988877766553
No 122
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=79.40 E-value=2.3 Score=46.98 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhcccccc
Q 005974 490 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 569 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 569 (666)
..+.|++.+|+-|++++.. ..|.+.+... ...+.|.|+|.|+..+++..+-++++++
T Consensus 20 ~sla~~VeElv~NSiDA~A-t~V~v~V~~~----------------------t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA-TCVAVRVNME----------------------TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccCc-eEEEEEecCc----------------------eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 3478999999999998543 3444444322 2789999999999999999999999886
Q ss_pred C
Q 005974 570 R 570 (666)
Q Consensus 570 ~ 570 (666)
+
T Consensus 77 K 77 (1142)
T KOG1977|consen 77 K 77 (1142)
T ss_pred h
Confidence 4
No 123
>PLN03128 DNA topoisomerase 2; Provisional
Probab=76.58 E-value=3.8 Score=49.40 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhcc-CCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh-------
Q 005974 490 KRLMQTILNIVGNAVKFT-KEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP------- 560 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~-~~g~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~------- 560 (666)
.-|.+++.++|.||++.. .+|. -.|.+....++ =.|+|.|||.|||-+..+
T Consensus 51 pGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~d--------------------gsIsV~DnGrGIPv~ih~~~g~~~~ 110 (1135)
T PLN03128 51 PGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQ--------------------NTISVYNNGKGIPVEIHKEEGVYVP 110 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCC--------------------CeEEEEecCccccCCCCCCCCCccc
Confidence 458889999999999876 2222 23333333222 268999999999976432
Q ss_pred -hhhccccccCCCCCC-----CCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 561 -LLFTKFAQSRGSSCQ-----TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 561 -~if~~f~~~~~~~~~-----~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
-+|....++..-.+. .+-.|.|.+.|+.+-+. +.++......|-.|..++-
T Consensus 111 ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~----f~Vev~d~r~gk~y~q~f~ 167 (1135)
T PLN03128 111 ELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE----FTVETADGNRGKKYKQVFT 167 (1135)
T ss_pred eEEEEeeccccccCCccceeeccccCCCCeEEEeecCe----EEEEEEECCCCeEEEEEeC
Confidence 233333222211111 11258887776654433 4444421134556665554
No 124
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=75.55 E-value=27 Score=26.42 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVD 429 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~ 429 (666)
+.+++..+++.+...|.++...++.+... ..+++..+.++.+.+.+.....-+.
T Consensus 2 R~rIAreLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R 57 (68)
T PF07730_consen 2 RRRIARELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLREALQELR 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999988853 2334555555555555444433333
No 125
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=75.14 E-value=24 Score=32.48 Aligned_cols=75 Identities=5% Similarity=-0.018 Sum_probs=41.0
Q ss_pred HHHHHhhHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 60 IALAYFSIPVELIYFVQKSAF--FPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALML 137 (666)
Q Consensus 60 ia~ay~~ip~~l~~f~~~~~~--~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l 137 (666)
.++....+.+..+++.++.+. .+.++....+.++ .++..+++.++.+..+ ......++..+..++.+.+.++.
T Consensus 85 ~~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~i~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~ 159 (169)
T PF07694_consen 85 AFIIIILIGILAGLISRFFRRKSKKIKLLYLFLLSL--VISIISMLIILLLIPP---FSNALSLVSTILLPYIVINVLGI 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhccHHHHHHHHH--HHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444332 4555655544444 7788787777766552 33344555555656655565554
Q ss_pred HH
Q 005974 138 VH 139 (666)
Q Consensus 138 ~~ 139 (666)
+.
T Consensus 160 ~l 161 (169)
T PF07694_consen 160 LL 161 (169)
T ss_pred HH
Confidence 43
No 126
>COG5393 Predicted membrane protein [Function unknown]
Probab=73.83 E-value=42 Score=28.43 Aligned_cols=52 Identities=8% Similarity=0.167 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 83 YRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHI 140 (666)
Q Consensus 83 ~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l~~~ 140 (666)
+-.+-.+|++|-+ . ..-.+.+|.|| |.|.+...+-..+++..+..+.++|++
T Consensus 53 m~gLtl~fa~~~l-m-sL~vLvi~~f~----~tyRl~a~~a~~~vl~vl~~i~ciW~l 104 (131)
T COG5393 53 MAGLTLLFAAFGL-M-SLMVLVIWAFD----PTYRLNAMIATTAVLLVLALIGCIWTL 104 (131)
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555521 1 22345667788 455554555555666677777778874
No 127
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=73.20 E-value=1.6 Score=48.12 Aligned_cols=99 Identities=16% Similarity=0.308 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhccCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh------
Q 005974 490 KRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP------ 560 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~~g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~------ 560 (666)
.-|.+++.+.++||++-+=.| .|.|.+. .+ =.++|.|||.|||-+..+
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~--~d---------------------~sisV~DnGRGIPvdiH~~~~~~~ 91 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLH--ED---------------------GSISVEDNGRGIPVDIHPKEKVSA 91 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEc--CC---------------------CeEEEEECCCCCccccCCCCCCCc
Confidence 567788888888888865433 3444333 22 268999999999977633
Q ss_pred --hhhccccccCCCCC-----CCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 005974 561 --LLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 561 --~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
-+|........-.. ...-.|.|.+.|+.+-+ .+.++.. ..|..+...+.-+
T Consensus 92 vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~----~l~v~v~--r~gk~y~q~f~~G 149 (635)
T COG0187 92 VEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALST----WLEVEVK--RDGKIYRQRFERG 149 (635)
T ss_pred eEEEEEeeccCcccCCCccEeecCCCccceEEEecccc----eEEEEEE--ECCEEEEEEEeCC
Confidence 34433322211111 11236788877765543 3444443 2355555555433
No 128
>PRK10263 DNA translocase FtsK; Provisional
Probab=71.56 E-value=1.9e+02 Score=35.78 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=10.8
Q ss_pred HHHHHHHhhHHHHHHH
Q 005974 58 ILIALAYFSIPVELIY 73 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~ 73 (666)
.+++++.|.+|+.+++
T Consensus 77 ~LFGl~AYLLP~LL~~ 92 (1355)
T PRK10263 77 FIFGVMAYTIPVIIVG 92 (1355)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3567778888876643
No 129
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=70.75 E-value=56 Score=29.09 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHhhHHHHHHHHHhhcCCCchhHH--HHHHHHHH------HHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHH
Q 005974 61 ALAYFSIPVELIYFVQKSAFFPYRWV--LMQFGSFI------ILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCI 132 (666)
Q Consensus 61 a~ay~~ip~~l~~f~~~~~~~~~~~~--~~~f~~fi------~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~ 132 (666)
..||.|....+...-++--|..+..+ -..+..|- .+|-.-+++.-|..... -.||+..+.-.++++++.+
T Consensus 40 lmaylSL~~li~Ly~~~ty~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~~WslsiM--~wYWll~LlLyl~tiisLV 117 (161)
T PF13042_consen 40 LMAYLSLYILIDLYCKNTYDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLGKWSLSIM--MWYWLLILLLYLITIISLV 117 (161)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 67899988777654444445555444 11222221 23444445555664321 3467777777777777666
Q ss_pred HHH
Q 005974 133 TAL 135 (666)
Q Consensus 133 ~a~ 135 (666)
+-+
T Consensus 118 iLV 120 (161)
T PF13042_consen 118 ILV 120 (161)
T ss_pred HHh
Confidence 543
No 130
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=68.56 E-value=1.2e+02 Score=31.26 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 365 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 435 (666)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 435 (666)
-++.+++..+.++.....++|.-+. |..+...++.++.. .+++..+.++.+++...+....+.|+-.+.
T Consensus 23 Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 23 YKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3444555556677888888888775 34444444444333 566778888889988888888887776543
No 131
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=66.65 E-value=1.3 Score=51.27 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 559 (666)
|..-|.+++.++|.||++-.-.|. -.|.+....+ =.++|+|||.|||-+..
T Consensus 126 ~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~D---------------------gsItV~DnGRGIPvd~h 177 (903)
T PTZ00109 126 DEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKD---------------------GSVEISDNGRGIPCDVS 177 (903)
T ss_pred CCCcceEEEEEEeeccchhhccCCCcEEEEEEcCC---------------------CeEEEEeCCcccccccc
Confidence 344577788888888888654442 2222332222 25899999999997543
No 132
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=66.12 E-value=1.1e+02 Score=28.41 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred cCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 005974 300 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 343 (666)
Q Consensus 300 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~ 343 (666)
+..++..+|.+++... ...|+++|+-+.+-.|..++.-+.++.
T Consensus 115 I~g~GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~ 157 (177)
T PF06018_consen 115 IYGGGERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSK 157 (177)
T ss_dssp EEETTEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 3345556777777764 348999999988888888887775443
No 133
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=63.31 E-value=81 Score=27.06 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=4.7
Q ss_pred HHHHHhhcC
Q 005974 71 LIYFVQKSA 79 (666)
Q Consensus 71 l~~f~~~~~ 79 (666)
.+..++|++
T Consensus 19 ii~~vr~~~ 27 (115)
T PF10066_consen 19 IIRLVRKRK 27 (115)
T ss_pred HHHHHHHhh
Confidence 344456655
No 134
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=63.31 E-value=32 Score=27.57 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHH
Q 005974 383 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 462 (666)
Q Consensus 383 isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 462 (666)
+.|.+||-++.|.++...-.+...+.+ ++.+.+.....-|..-- +++ . .-....++|.++++..+.-+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~--~~~~~~~~Rl~ALa~a~-~ll--~-------~~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASVE--EFAEAFSGRLQALARAH-DLL--S-------RSDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCHH--HHHHHHHHHHHHHHHHH-HHH--h-------cCCCCCccHHHHHHHHHHhc
Confidence 589999999999999888766543332 22222332222222221 111 1 12335789999998888766
Q ss_pred H
Q 005974 463 K 463 (666)
Q Consensus 463 ~ 463 (666)
.
T Consensus 70 ~ 70 (83)
T PF07536_consen 70 G 70 (83)
T ss_pred c
Confidence 5
No 135
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=58.72 E-value=7.1 Score=31.45 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=21.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005974 4 VVGCNLCLISCFTLYSLAILSYWLRQLLDMES 35 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (666)
.+-|..++|+||++-.+..+--|++-+..-.|
T Consensus 17 pteckvsvisffllayllmahiwlswfsnnqh 48 (138)
T PF05663_consen 17 PTECKVSVISFFLLAYLLMAHIWLSWFSNNQH 48 (138)
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 35799999999966655556667654343344
No 136
>COG3462 Predicted membrane protein [Function unknown]
Probab=57.56 E-value=77 Score=26.53 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHHhhhhHHhHh-hhccccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 005974 82 PYRWVLMQFGSFIILCGLTHFISL-WTFTVHSK----AVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKT 149 (666)
Q Consensus 82 ~~~~~~~~f~~fi~~cg~~h~~~i-~~~~~~~~----~~~~~~~~~k~~~a~~s~~~a~~l~~~ip~~l~~~s 149 (666)
.|-|++.-+.+.|...++..+..- +++|+..| +-+..+.++--+-++++++..+....++-....-++
T Consensus 7 n~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~ 79 (117)
T COG3462 7 NFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGS 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 356666666666666665555444 35554433 111122244445555555444443334433333333
No 137
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=57.01 E-value=44 Score=36.47 Aligned_cols=76 Identities=11% Similarity=0.158 Sum_probs=57.2
Q ss_pred hHHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 005974 57 DILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM 136 (666)
Q Consensus 57 d~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~ 136 (666)
-...++.++.||+.++++.-+.|+..-.|-+.+++++ .|..++++..+...+ .+-..+.+++|+.....
T Consensus 183 ~~~l~~~~~~iP~~lv~~~d~~kgi~e~~p~~lvag~--sfti~q~l~a~~lGP---------elPdIig~lvsl~i~~~ 251 (522)
T COG1620 183 GRQLPILSLLIPFLLVFLMDGWKGIKEVWPAILVAGL--SFTIPQFLLANFLGP---------ELPDIIGGLVSLGILAL 251 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHHH
Confidence 3456889999999999999988888888999999998 899999999988763 23345566666655544
Q ss_pred H-HHHhhh
Q 005974 137 L-VHIIPD 143 (666)
Q Consensus 137 l-~~~ip~ 143 (666)
. .+..|+
T Consensus 252 flk~~~PK 259 (522)
T COG1620 252 FLKKWQPK 259 (522)
T ss_pred HHHhhCCc
Confidence 3 334444
No 138
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=53.51 E-value=62 Score=35.98 Aligned_cols=78 Identities=6% Similarity=0.166 Sum_probs=53.1
Q ss_pred HHHhhhHHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHH
Q 005974 52 YQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSC 131 (666)
Q Consensus 52 ~~~~sd~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~ 131 (666)
+...+-....+..+.+|+.++++..++|...-.|.+.+++++ .++.++.+..+...+ .+...+++++++
T Consensus 176 l~~~~a~~~~~~~~~ip~~~v~~~~g~k~~r~~~p~~L~~g~--~~~~~~~~~a~~~gp---------el~~i~g~l~~l 244 (522)
T PF02652_consen 176 LSSMVALQLPVLSLLIPFLMVWLVGGWKGVREVWPFALVAGL--SFAIPQWLVANFLGP---------ELPGILGGLVGL 244 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHccc---------ccchHHHHHHHH
Confidence 333344555677888999999999888877778888877777 777777776665442 334555666666
Q ss_pred HHHHHHHHH
Q 005974 132 ITALMLVHI 140 (666)
Q Consensus 132 ~~a~~l~~~ 140 (666)
...+.+.++
T Consensus 245 ~~~~~~~r~ 253 (522)
T PF02652_consen 245 AVLVLFLRF 253 (522)
T ss_pred HHHHHHHHH
Confidence 666665664
No 139
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=53.23 E-value=1.1e+02 Score=24.25 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHH
Q 005974 384 NHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIK 463 (666)
Q Consensus 384 sHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~ 463 (666)
.|-+-|-|++|..++. ...+...+++..+.++-|..- ......+.+.+.++.+..++.
T Consensus 11 PHFl~NtLn~I~~l~~-------------------~~~~~~~~~i~~ls~~lRy~l---~~~~~~v~l~~El~~i~~Yl~ 68 (82)
T PF06580_consen 11 PHFLFNTLNSISWLAR-------------------IDPEKASEMILSLSDLLRYSL---SSKEEFVTLEEELEFIENYLE 68 (82)
T ss_pred hHHHHHHHHHHHHHHH-------------------cCHHHHHHHHHHHHHHHHHHh---CCCCCeeeHHHHHHHHHHHHH
Confidence 8999999999988733 223344444444444444322 223346889999988888877
Q ss_pred HH
Q 005974 464 PV 465 (666)
Q Consensus 464 ~~ 465 (666)
-.
T Consensus 69 i~ 70 (82)
T PF06580_consen 69 IQ 70 (82)
T ss_pred HH
Confidence 44
No 140
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=51.62 E-value=3.6e+02 Score=29.52 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCCchhh-HHHHHHhhhHHHHHHHhhHHHHHHHHH
Q 005974 41 TQWPPDEL-LVRYQYISDILIALAYFSIPVELIYFV 75 (666)
Q Consensus 41 ~~~~~~~~-~~~~~~~sd~~ia~ay~~ip~~l~~f~ 75 (666)
+.|.++.. ...|+++-=....++.+.+|+...|.-
T Consensus 69 ~~~~~~~~~~~~W~~iyw~~~il~w~ilPf~~~y~e 104 (471)
T PF04791_consen 69 GQWLNTSLMEVLWYIIYWLTFILTWLILPFAQFYYE 104 (471)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555442 234667766666678899999888764
No 141
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=48.65 E-value=1.4e+02 Score=25.94 Aligned_cols=65 Identities=25% Similarity=0.178 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHH
Q 005974 60 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACA 127 (666)
Q Consensus 60 ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a 127 (666)
.+-.|+.+++.++|..++.+. .+..+.+.+.++...|...++.++.-..|. +..+...++....+
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~-~~~~~~l~~Elv~~ 114 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPS-PFLWVALIFELVLA 114 (124)
T ss_pred HHHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 456678888888877765443 344555566777889999999999876554 33334444444433
No 142
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=47.62 E-value=23 Score=40.46 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHhh-ccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh
Q 005974 488 DEKRLMQTILNIVGNAVK-FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik-~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 559 (666)
-..-+.+|+.+++.||.+ -.+++.-++.+....+. -.++|.|||.|||-+..
T Consensus 50 ~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 50 YVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred cCCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeec
Confidence 344589999999999998 33344444444443333 47999999999996653
No 143
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=44.65 E-value=1.4e+02 Score=29.29 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=45.6
Q ss_pred HHHHHHhhhHHHHHHH---hhHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHhhhh-HHhHhhhccccchhHHHHHHHH
Q 005974 49 LVRYQYISDILIALAY---FSIPVELIYFVQKSA--FFPYRWVLMQFGSFIILCGLT-HFISLWTFTVHSKAVAVVMTIA 122 (666)
Q Consensus 49 ~~~~~~~sd~~ia~ay---~~ip~~l~~f~~~~~--~~~~~~~~~~f~~fi~~cg~~-h~~~i~~~~~~~~~~~~~~~~~ 122 (666)
.+|.|..+|....++- |.+|+.++++...-. -.+-.|.+.+|..++ +||.. .+..=.++...++...+++++-
T Consensus 103 ~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~l-a~~~~~~F~i~f~~~~~aFwt~~as~l~ 181 (268)
T COG4587 103 YLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLAL-ALLFLLRFLIQFTFGLFAFWTERASSLG 181 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccchhhHH
Confidence 5688999999998886 788888888875543 234445555455443 55532 2222233333333334566666
Q ss_pred HHHHHH
Q 005974 123 KMACAF 128 (666)
Q Consensus 123 k~~~a~ 128 (666)
|..=..
T Consensus 182 ~~~~~l 187 (268)
T COG4587 182 KFWWLL 187 (268)
T ss_pred HHHHHH
Confidence 664433
No 144
>PF15449 Retinal: Retinal protein
Probab=43.59 E-value=5.4e+02 Score=30.98 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=31.9
Q ss_pred ecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhh
Q 005974 487 GDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 562 (666)
Q Consensus 487 ~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 562 (666)
+-..+|.+++..|=.-|..+...+. .+ .-+.-+|.|+|.+.|-+...
T Consensus 322 ~~de~llr~l~~le~~a~g~~~p~~---------~~--------------------~~L~SEDSGiGadneS~~~~ 368 (1287)
T PF15449_consen 322 GVDERLLRALGQLESLASGHGDPGV---------QD--------------------LPLCSEDSGIGADNESVQSV 368 (1287)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCC---------CC--------------------CccccccccCCccchhhhhh
Confidence 3456788888888888887776541 01 45556788999887765544
No 145
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=43.23 E-value=1.8e+02 Score=33.13 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHhhhHHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhh
Q 005974 49 LVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLW 106 (666)
Q Consensus 49 ~~~~~~~sd~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~ 106 (666)
+..++.=+++--++|+..+|+.+.+..+..+..+.++++.+..++ -+...||++..+
T Consensus 68 l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~-all~lsHll~~l 124 (616)
T PF10131_consen 68 LRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWILLALSM-ALLALSHLLSTL 124 (616)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH-HHHHHHhHHHHH
Confidence 334555578888889999999886555444333455555444443 255677854443
No 146
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=43.13 E-value=45 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHhhHHHHHHHHHhhc-CCCchhHHHHHHHHH
Q 005974 58 ILIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGSF 93 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~~~-~~~~~~~~~~~f~~f 93 (666)
.+.++..+.|...+.|+.|++ +..-++++.. +.+|
T Consensus 5 S~~~iglMfisv~~i~~sR~Klk~~~lk~i~~-~vAy 40 (58)
T PF10966_consen 5 SFGAIGLMFISVILIYFSRYKLKGKFLKFIVS-LVAY 40 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHH
Confidence 356777888888999999865 4445677766 4444
No 147
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=42.33 E-value=3.5e+02 Score=26.65 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=28.9
Q ss_pred cccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 005974 302 AKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 343 (666)
Q Consensus 302 ~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~ 343 (666)
.++..+|.+++.... ..|+.+|+-+.+-.|..++.-+.+..
T Consensus 116 g~g~RLGTl~l~r~~-~~F~~dDliLaEy~aTVVG~Eilr~~ 156 (251)
T TIGR02787 116 GGGERLGTLILARSD-KEFNDDDLVLAEYAATVVGMELLRAQ 156 (251)
T ss_pred cCCceeEEEEEEEcC-CCCCcccchhhhhHhHHHHHHHHHHH
Confidence 344457777766543 48999999888888888877775443
No 148
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=41.25 E-value=2.3e+02 Score=32.26 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhhccccH
Q 005974 130 SCITALMLVHIIPDLLSVKTR 150 (666)
Q Consensus 130 s~~~a~~l~~~ip~~l~~~s~ 150 (666)
+-+-++++.+++-..-.+.+.
T Consensus 446 s~il~iGllP~fE~~F~~~T~ 466 (700)
T COG1480 446 SGILVLGLLPYFEALFGLLTT 466 (700)
T ss_pred HHHHHHHHHHHHHHHhccCch
Confidence 333444444444444444443
No 149
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.97 E-value=1e+02 Score=23.10 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHhhhhHHhHhhhccc
Q 005974 82 PYRWVLMQFGSFIILCGLTHFISLWTFTV 110 (666)
Q Consensus 82 ~~~~~~~~f~~fi~~cg~~h~~~i~~~~~ 110 (666)
++|-++..++.||-+.|+.-.+.-+.+-.
T Consensus 5 ~~RivlAtiavFiaLagl~~~I~GlLfD~ 33 (62)
T PF11177_consen 5 EYRIVLATIAVFIALAGLAAVIHGLLFDE 33 (62)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 57888999999999999887777777663
No 150
>PRK05415 hypothetical protein; Provisional
Probab=38.45 E-value=4.8e+02 Score=27.20 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHH---------HHhhhhch---hHHhHHHHHHHHHHhcc
Q 005974 121 IAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDR---------EMGLILTQ---EETGRHVRMLTHEIRST 188 (666)
Q Consensus 121 ~~k~~~a~~s~~~a~~l~~~ip~~l~~~s~e~~~~~~a~~l~~---------~~~~~~~~---~~~~~~l~~lt~~i~~~ 188 (666)
..-++.+++.++.+..+++-.-.+..++..+.... .+.++-. -.+.+.+. .+.........+.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~rE~~~l~rL~~~~~~r~-~a~~l~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~ 180 (341)
T PRK05415 102 GAAVVGALIVLAGLGIVVREWRRLRRLRQRAHLRD-EARALLHSHDVGEARAFCEKLAKQAGIPQLHPALQRWQASLHET 180 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCChhhHHHHHHHHHHHhCCCcccHHHHHHHHhhccc
Confidence 33444555555555556666666666655444322 2222211 01111111 12223344445556666
Q ss_pred cchhHHHHHHHHHHHh
Q 005974 189 LDRHTILKTTLVELGR 204 (666)
Q Consensus 189 ld~~~il~~~~~~l~~ 204 (666)
.|..+++.-.-+++..
T Consensus 181 ~~~~e~l~L~e~~vl~ 196 (341)
T PRK05415 181 HNDAELLRLYEREVLP 196 (341)
T ss_pred CCHHHHHHHHHHHhhH
Confidence 6666666655554443
No 151
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=38.33 E-value=2.2e+02 Score=26.34 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHhhhhhccccHHHHHHHHHHHHHHHHhhhhchhH
Q 005974 139 HIIPDLLSVKTRELFLKNRADELDREMGLILTQEE 173 (666)
Q Consensus 139 ~~ip~~l~~~s~e~~~~~~a~~l~~~~~~~~~~~~ 173 (666)
.++-.....+.+.-.++++.+.|++++++++++.+
T Consensus 142 ~~l~g~~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 142 CFLTGLVGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred HHHccccCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444445566778888888888777654
No 152
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.01 E-value=4.6e+02 Score=26.88 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHH
Q 005974 354 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLV 428 (666)
Q Consensus 354 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li 428 (666)
++.+.++.++...+++.+.-.++.+=...+..|+...++....+.+--+.. .+-...+.++..++..++.+..-+
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333344444555666666666655555544432 222334567777777777776667
Q ss_pred HHHHHHHH
Q 005974 429 DDVLDLSR 436 (666)
Q Consensus 429 ~~ll~~~~ 436 (666)
.+++.+..
T Consensus 218 rnLLQle~ 225 (401)
T PF06785_consen 218 RNLLQLES 225 (401)
T ss_pred HHHHHhhh
Confidence 77766554
No 153
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=37.69 E-value=3e+02 Score=24.59 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=37.0
Q ss_pred HHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccc
Q 005974 60 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV 110 (666)
Q Consensus 60 ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~ 110 (666)
|+++|+.+++..+...... -+.|....+...++..|..|++.+-.+.-
T Consensus 3 i~lg~~~~G~~fG~la~~~---G~~~~~~~~mS~lvfaGa~Qf~~~~l~~~ 50 (143)
T PF03591_consen 3 IALGYIPFGIAFGVLAVEA---GFSWWEAILMSLLVFAGAAQFVAVGLLAA 50 (143)
T ss_pred chHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4678999998888766443 36677777888888999999999876543
No 154
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=37.68 E-value=39 Score=25.29 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCCCceEEeecccccCCcc--------ccCCCCcCcccceEEEEEeeCCCCCccchh
Q 005974 275 VPPDIVAVRVPLLHLSNFQ--------INDWPELPAKSYAVMVLMLPTDGGRKWRDH 323 (666)
Q Consensus 275 ~~~~~~~~~~pl~~~~~~~--------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 323 (666)
..+....+++.|.+.++-| ...|++|++|.|.+.|.+....+ .|+..
T Consensus 3 ~~~~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~--~~~~~ 57 (66)
T PF07495_consen 3 SNPENIRYRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNG--KWSSD 57 (66)
T ss_dssp TCCTTEEEEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS---B-SS
T ss_pred CCCCceEEEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCC--CcCcc
Confidence 4455666777776554432 33578899999999999998877 45443
No 155
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=36.00 E-value=4e+02 Score=25.57 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=30.8
Q ss_pred cCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 005974 300 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 343 (666)
Q Consensus 300 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~ 343 (666)
+..++..+|.+.+.... ..|+++++-+++-.+..++..+.+..
T Consensus 120 I~G~g~RLGTLil~R~d-~~F~ddDLiL~E~~aTvvG~qil~~k 162 (261)
T COG4465 120 IYGGGERLGTLILWRLD-DKFTDDDLILVEYAATVVGMQILREK 162 (261)
T ss_pred EecCCeeeeeEEEEecC-CCCCccceehhhhhhHHHHHHHHHHH
Confidence 44556667777665522 28999999999988888888875443
No 156
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=35.67 E-value=2.4e+02 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=12.7
Q ss_pred HHHHHHhhhhhccccHHHHHHHHHHHHHHHHh
Q 005974 135 LMLVHIIPDLLSVKTRELFLKNRADELDREMG 166 (666)
Q Consensus 135 ~~l~~~ip~~l~~~s~e~~~~~~a~~l~~~~~ 166 (666)
++.+.+++.+..+...-.........+++++.
T Consensus 12 vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~ 43 (90)
T PF06103_consen 12 VLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVD 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444444443332223333444444444
No 157
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=35.03 E-value=5.7e+02 Score=27.05 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=53.0
Q ss_pred HHHhhhHHHHHHHhhHHHHHHHHHhhcC------------CCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHH
Q 005974 52 YQYISDILIALAYFSIPVELIYFVQKSA------------FFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVM 119 (666)
Q Consensus 52 ~~~~sd~~ia~ay~~ip~~l~~f~~~~~------------~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~ 119 (666)
+-.++-.+|+++.|+..++++-+-.-.. |-..+++++.|.+=++.| +.=+..+-.-.....|
T Consensus 51 Lstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~-l~~l~~i~~~~~~~~p----- 124 (371)
T PF10011_consen 51 LSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYS-LLVLIAIRSGDYGSVP----- 124 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHccccccccCc-----
Confidence 4567888888888888887776543222 445677777666644444 2222222221211112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHH
Q 005974 120 TIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELD 162 (666)
Q Consensus 120 ~~~k~~~a~~s~~~a~~l~~~ip~~l~~~s~e~~~~~~a~~l~ 162 (666)
.+.-.++.++.+...+.++.+|-.....-......+.+.++..
T Consensus 125 ~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~ 167 (371)
T PF10011_consen 125 RLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDAR 167 (371)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2222333344444455555555555554444444444444433
No 158
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.94 E-value=2.6e+02 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHH
Q 005974 58 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHF 102 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~ 102 (666)
.+|+++.+.+.+.++.+.|.|.+-+||=+...++.++++-+..+.
T Consensus 21 ~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~ 65 (149)
T PF11694_consen 21 ILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQY 65 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 344555555555666667777788888777766666555544443
No 159
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=34.74 E-value=1.8e+02 Score=29.43 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=33.5
Q ss_pred HHHHHHHhhHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHH
Q 005974 58 ILIALAYFSIPVELIYFVQKSA-FFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTI 121 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~~~~-~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~ 121 (666)
..+-++|+.+|+..-|...++. ...-++...++.++ +=|.-+=...--.|.++.|+.++.-+
T Consensus 139 gAaila~iviP~~~~y~ln~~~~s~~~~R~~ll~~a~--~QGvL~Ga~ls~~~l~sePf~~LT~i 201 (299)
T PF05884_consen 139 GAAILAYIVIPLIAYYYLNKEDGSLAESRLALLFFAL--FQGVLVGAGLSHLYLSSEPFIALTPI 201 (299)
T ss_pred hHHHHHHHHHHHHHHhhcccccCchHHHHHHHHHHHH--HHHHHHHHHhhcccccCCcHHHHHHH
Confidence 3456799999998888654432 12222333323333 55554444444466666776544433
No 160
>PRK04158 transcriptional repressor CodY; Validated
Probab=34.59 E-value=4.7e+02 Score=25.96 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=31.0
Q ss_pred cCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 005974 300 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 343 (666)
Q Consensus 300 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~ 343 (666)
...++...|.+++.... ..++++++.+++..|..++..+.+.+
T Consensus 117 I~ggGeRLGTLvl~r~~-~~f~~dDliL~EyaATVVgLEIlR~~ 159 (256)
T PRK04158 117 IIGGGERLGTLILARFD-KEFTDDDLILAEYAATVVGMEILREK 159 (256)
T ss_pred EecCCeEEEEEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777766433 48999999999999988888775443
No 161
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=34.51 E-value=71 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=11.2
Q ss_pred HHhhHHHHHHHHHhhcCCC--chhHHHH
Q 005974 63 AYFSIPVELIYFVQKSAFF--PYRWVLM 88 (666)
Q Consensus 63 ay~~ip~~l~~f~~~~~~~--~~~~~~~ 88 (666)
...+++..++.+..|+.|+ +|+|.+.
T Consensus 69 ~l~~~s~~lLI~WYR~gdl~Pkfr~li~ 96 (118)
T PF10856_consen 69 LLICISAILLIFWYRQGDLDPKFRYLIY 96 (118)
T ss_pred HHHHHHHHhheeehhcCCCChhHHHHHH
Confidence 3334444444334444444 3555554
No 162
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.69 E-value=1.3e+02 Score=29.69 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCchh---hHHHHHHhhhHHHHHHHhhHHHHHHH-----HHhhcCCCc
Q 005974 11 LISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDE---LLVRYQYISDILIALAYFSIPVELIY-----FVQKSAFFP 82 (666)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sd~~ia~ay~~ip~~l~~-----f~~~~~~~~ 82 (666)
+++||+.|.-+++-.++.-+. -|-.+ +. |-. -...++.+|-+++.+.|..|-.+.+- ++.+..-..
T Consensus 105 fl~~WlmF~~~tafi~~ka~r-kp~~g-~t----pRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~F~~~~~~~md 178 (328)
T KOG1734|consen 105 FLFCWLMFCGFTAFITLKALR-KPISG-DT----PRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFTFFYLKTTYMD 178 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cccCC-CC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeEEeecchhHhh
Confidence 578898888774444443221 12211 11 221 13467999999999999998877762 222222234
Q ss_pred hhHHHHHHHHH
Q 005974 83 YRWVLMQFGSF 93 (666)
Q Consensus 83 ~~~~~~~f~~f 93 (666)
|.-.+.+++.+
T Consensus 179 ~gi~~lfyglY 189 (328)
T KOG1734|consen 179 FGISFLFYGLY 189 (328)
T ss_pred hhHHHHHHHHH
Confidence 55555555554
No 163
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=33.17 E-value=1.8e+02 Score=28.30 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=23.2
Q ss_pred HhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhh
Q 005974 64 YFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLT 100 (666)
Q Consensus 64 y~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~ 100 (666)
.+.+|+.+.++.+||+....+..++=..+|+++....
T Consensus 2 ~~~~pi~l~~~~rk~~~~~~~~f~~Ga~~F~v~~~vl 38 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKKISWKPFILGALVFFVFAQVL 38 (223)
T ss_pred eehHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3578988888788776655555554445555555444
No 164
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=33.03 E-value=2.9e+02 Score=29.05 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHhhHHHHHHHHHh-hcCCCchhHHHHHHHHHHHHhhhhHHhHhhhc
Q 005974 58 ILIALAYFSIPVELIYFVQ-KSAFFPYRWVLMQFGSFIILCGLTHFISLWTF 108 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~-~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~ 108 (666)
+--..+|..|++.++.... +-+--++|++-- ..+.+.+-|+-|-..+.-.
T Consensus 129 lG~~~~yi~~~lllV~~l~~~i~Ye~WR~~H~-lm~vvYilg~~H~~~l~~~ 179 (438)
T COG4097 129 LGEWSAYIFIGLLLVWRLWLNIGYENWRIAHR-LMAVVYILGLLHSYGLLNY 179 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHHhcch
Confidence 3345678888888887443 334456777773 5555668899998888654
No 165
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=32.46 E-value=2e+02 Score=33.84 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=48.0
Q ss_pred hhhHHHHHHHhhHHHHHHHHHh-hcCCCchhHHHHHHHHHHHHhhhhHHhHhhhc-cccchhHHHHHHHHHHHHHHHHHH
Q 005974 55 ISDILIALAYFSIPVELIYFVQ-KSAFFPYRWVLMQFGSFIILCGLTHFISLWTF-TVHSKAVAVVMTIAKMACAFVSCI 132 (666)
Q Consensus 55 ~sd~~ia~ay~~ip~~l~~f~~-~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~-~~~~~~~~~~~~~~k~~~a~~s~~ 132 (666)
.+|..|-...+.+-+..+||-. +-+.+.-|+++++.+.|++++-..--++++.+ +. ++..+..++-++...+-+-
T Consensus 59 ~~Dv~iv~isy~vmflYis~~l~~l~~v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~---~~t~I~eViPFLvLaIGVD 135 (886)
T TIGR00920 59 SSDVIVMTITRCIAVLYIYYQFCNLRQLGSKYILGIAGLFTIFSSFVFSTAVIHFLGS---ELTGLNEALPFFLLLIDLS 135 (886)
T ss_pred ccceEEeeHHHHHHHHHHHHHhCCccccCcchhhhhHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHhHHHhhhchh
Confidence 5666555444444444444432 22334567888888888877766666665543 33 3333356666666667777
Q ss_pred HHHHHHHH
Q 005974 133 TALMLVHI 140 (666)
Q Consensus 133 ~a~~l~~~ 140 (666)
+++.+...
T Consensus 136 nifiLa~~ 143 (886)
T TIGR00920 136 KASALAKF 143 (886)
T ss_pred hHHHHHhh
Confidence 77666554
No 166
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.27 E-value=2.1e+02 Score=21.57 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhhch
Q 005974 158 ADELDREMGLILTQ 171 (666)
Q Consensus 158 a~~l~~~~~~~~~~ 171 (666)
..+++++.+.++++
T Consensus 50 ~~~~~k~l~~le~e 63 (68)
T PF06305_consen 50 IRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 167
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.07 E-value=2.1e+02 Score=23.00 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhh
Q 005974 61 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT 107 (666)
Q Consensus 61 a~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~ 107 (666)
++.+..|-+-+.+| +|++-.+|+...+++..+++.-...-+.++.
T Consensus 4 a~~c~~i~lrl~~y--rr~garhr~~~s~lA~lli~~~~~~~i~~l~ 48 (83)
T PF05449_consen 4 ALICLAIALRLMFY--RRNGARHRPWISWLAYLLIVAYGSVPIRILF 48 (83)
T ss_pred HHHHHHHHHHHhee--ecCCCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777665 5566677777776776655443344444443
No 168
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.98 E-value=4.7e+02 Score=25.12 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhhch----hHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCC
Q 005974 154 LKNRADELDREMGLILTQ----EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR 218 (666)
Q Consensus 154 ~~~~a~~l~~~~~~~~~~----~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~ 218 (666)
++++..+++.+...+... ++...-+..++..+....+.+++++++-+...+-++++.+.|.+...
T Consensus 50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~ 118 (218)
T COG3159 50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQD 118 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEech
Confidence 344455555555444333 33344577888888899999999999999999999999999877653
No 169
>PRK09695 glycolate transporter; Provisional
Probab=31.30 E-value=1.6e+02 Score=33.15 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=49.5
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 58 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALML 137 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l 137 (666)
....+-.+.+|+.+++++-+.|..+-.|-+.+++++ .++.++++..+.+.+ .+...+.++++++..+.+
T Consensus 197 ~~l~~~~~~ipf~lv~~~~g~k~~~~~~p~~L~~g~--~f~~~~~~~a~~~gp---------eL~~ii~~lv~l~~~~l~ 265 (560)
T PRK09695 197 RQLPFLSVLVPFWLVAMMDGWKGVKETWPAALVAGG--SFAVTQFFTSNYIGP---------ELPDITSALVSIVSLALF 265 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCc---------chHHHHHHHHHHHHHHHH
Confidence 334455688999999888777776677888888887 778888877766553 445566666666666665
Q ss_pred HH
Q 005974 138 VH 139 (666)
Q Consensus 138 ~~ 139 (666)
.|
T Consensus 266 ~k 267 (560)
T PRK09695 266 LK 267 (560)
T ss_pred HH
Confidence 55
No 170
>COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=2.3e+02 Score=29.74 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=47.3
Q ss_pred ccchhHHHHHHH--HHHHHHHHHHHHhhhcCCCCCccCCCCCchhhHHHHHHhhhHHHHHHHhhHHHHHHHHHhhcCCCc
Q 005974 5 VGCNLCLISCFT--LYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFP 82 (666)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ia~ay~~ip~~l~~f~~~~~~~~ 82 (666)
.|-++...+||+ ++.-..++..+-++..... -.+.-|+-| + |+ .|.-..+.|++.+-...||-+.+-
T Consensus 93 ~~~~l~~f~fwgwq~~iV~a~~s~~~G~T~skE--yaE~eW~id-i--~~------~ivwv~y~i~f~gTi~~rk~~hiY 161 (482)
T COG3278 93 FGGNLAWFVFWGWQLFIVLAAISLPLGLTQSKE--YAELEWPID-I--LL------TIVWVAYGIVFFGTILKRKEPHIY 161 (482)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhccccchh--hccccchhH-H--HH------HHHHHHHHHHHHHHHHHhcCCeEE
Confidence 355677777774 3332223333322222211 135789776 2 22 234455566666665555555443
Q ss_pred hhHHHHHHHHHHHHhhhhHHhH
Q 005974 83 YRWVLMQFGSFIILCGLTHFIS 104 (666)
Q Consensus 83 ~~~~~~~f~~fi~~cg~~h~~~ 104 (666)
.... .+++||+-..+.|++.
T Consensus 162 VanW--fy~afi~~iamLhivN 181 (482)
T COG3278 162 VANW--FYGAFIVTIAMLHIVN 181 (482)
T ss_pred EEhH--HHHHHHHHHHHHHHHh
Confidence 3333 3789999999999887
No 171
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=31.06 E-value=1.7e+02 Score=27.77 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=50.3
Q ss_pred CChhHHHHhcccCceEccCCCcc-hhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCcc
Q 005974 242 NLPIVTDVFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 320 (666)
Q Consensus 242 ~~~~~~~v~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 320 (666)
..+.+..++++++.+.+.+..-. .+.++. .......+.++.|+.. -|++++..+.+|.|
T Consensus 120 ~g~i~~~~~~~~~~~yL~nl~lyPGr~Ef~--~lP~ntq~VlvqP~g~------------------~G~lvlgs~~~R~f 179 (195)
T PF11152_consen 120 PGPICQRAMESGKLIYLVNLKLYPGRVEFD--YLPENTQSVLVQPLGQ------------------NGVLVLGSNSPRAF 179 (195)
T ss_pred hHHHHHHHHhcCCceeccccccCCCchhhh--hcCCCCcEEEEEEcCC------------------CeEEEEeeCCcccc
Confidence 44678899999998887765443 222222 2223344555666421 17888888999999
Q ss_pred chhhhHHHHHHHHHH
Q 005974 321 RDHELELIDVVADQV 335 (666)
Q Consensus 321 ~~~e~~ll~~va~~~ 335 (666)
+..|..++..+|+.+
T Consensus 180 t~~D~~Wi~~iA~Kl 194 (195)
T PF11152_consen 180 TKSDEAWIAGIADKL 194 (195)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998753
No 172
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=30.90 E-value=1.1e+02 Score=29.48 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=11.8
Q ss_pred CCCCCceEEecCch
Q 005974 641 DLTGPKPLFRDNDQ 654 (666)
Q Consensus 641 ~~~~~~iLvvDD~~ 654 (666)
+.+|++||||||=-
T Consensus 115 ~i~gk~VLIVDDIv 128 (211)
T PTZ00271 115 SVENRHILIVEDIV 128 (211)
T ss_pred CCCCCEEEEEeccc
Confidence 46899999999954
No 173
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=29.70 E-value=4.5e+02 Score=28.71 Aligned_cols=132 Identities=16% Similarity=0.073 Sum_probs=67.4
Q ss_pred eHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhcc---CCC-cEEEEEEeecCCCCC
Q 005974 450 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT---KEG-YVSIIASVAKPESLS 525 (666)
Q Consensus 450 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~---~~g-~v~i~~~~~~~~~~~ 525 (666)
++-..++++...++... ... .. +.. +-. +. -......++++++.||+-|. ..| .+.+.+..+
T Consensus 237 ~l~~~v~~~i~fikrn~-~~~--~~--v~~-l~r-~~-v~dyP~~alREai~NAv~HRDYs~~~~~v~I~iydD------ 302 (467)
T COG2865 237 NLPEQVERAISFIKRNL-NVP--YV--VEG-LRR-VE-VWDYPLEALREAIINAVIHRDYSIRGRNVHIEIYDD------ 302 (467)
T ss_pred CHHHHHHHHHHHHHHhc-CCc--ee--ecc-eeE-ee-cccCCHHHHHHHHHHHHHhhccccCCCceEEEEECC------
Confidence 45666777777666443 122 22 221 111 11 23345568999999999885 344 555554322
Q ss_pred CCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCC---------CCCCCCccchHHHHHHHHHHhCCE
Q 005974 526 DWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS---------SCQTPRAGLGLAICRRFVNLMGGH 596 (666)
Q Consensus 526 ~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---------~~~~~g~GlGL~i~k~iv~~~gG~ 596 (666)
+++|.+.|.-.+.-....+.. +.+.... -.--...|-|..-++..++.+|..
T Consensus 303 ------------------RieI~NPGgl~~gi~~~~l~~-~~s~~RNp~LA~~l~~~~liE~~GSGi~rm~~~~~~~gl~ 363 (467)
T COG2865 303 ------------------RIEITNPGGLPPGITPEDLLK-GRSKSRNPVLAKVLRDMGLIEERGSGIRRMFDLMEENGLP 363 (467)
T ss_pred ------------------eEEEECCCCCCCCCChhHccc-CCCcccCHHHHHHHHHhhhHHHhCccHHHHHHHHHHcCCC
Confidence 566777663222222222222 1110000 000123588889999999988875
Q ss_pred -EEEEecCCCCceEEEEEEEecC
Q 005974 597 -IWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 597 -I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
..+... ...|++.++...
T Consensus 364 ~p~f~~~----~~~~~~~~~~~~ 382 (467)
T COG2865 364 KPEFEED----NDYVTVILHGKG 382 (467)
T ss_pred Cceeecc----CCeEEEEEeccc
Confidence 444332 345566665543
No 174
>COG4377 Predicted membrane protein [Function unknown]
Probab=29.57 E-value=1e+02 Score=29.02 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 005974 61 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILC 97 (666)
Q Consensus 61 a~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~c 97 (666)
|+|...+|+...++.+|+-+...+-+..-..+|.++.
T Consensus 15 aiall~~pIG~i~w~krky~~~l~v~g~GA~~Ffvf~ 51 (258)
T COG4377 15 AIALLAFPIGSIWWAKRKYQINLAVLGLGAVAFFVFS 51 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 7788889998888888777776666655455555443
No 175
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=53 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.682 Sum_probs=13.4
Q ss_pred EEEEeecCCCCCCCCh
Q 005974 544 RVQVNDSGCGVPPQDI 559 (666)
Q Consensus 544 ~i~V~D~G~Gi~~~~~ 559 (666)
.+.|.|+|+||..+++
T Consensus 143 lLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDL 158 (785)
T ss_pred eeeEecccCCccHHHH
Confidence 5789999999987764
No 176
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.34 E-value=4.6e+02 Score=23.55 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHHhhHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHhhhhHHhHhhhccccc---------hhHHHHHHHHHHHH
Q 005974 61 ALAYFSIPVELIYFVQKSAFFP-----YRWVLMQFGSFIILCGLTHFISLWTFTVHS---------KAVAVVMTIAKMAC 126 (666)
Q Consensus 61 a~ay~~ip~~l~~f~~~~~~~~-----~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~---------~~~~~~~~~~k~~~ 126 (666)
|+....+++..+|-.+..+..| ..|+- +.+++ +++.--+.++..+|.|. .|..+..|.+-.+.
T Consensus 51 a~~~~vvGl~avf~~~~~~~~~~~~SlHSwlG--l~t~~-L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~l 127 (144)
T cd08766 51 ALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLG--IGTIS-LFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYL 127 (144)
T ss_pred HHHHHHHHHHHHHHHhcccCccccccHHHHHH--HHHHH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554333222222 34433 23322 44445555556677663 45566666666655
Q ss_pred HHHHHHHHH
Q 005974 127 AFVSCITAL 135 (666)
Q Consensus 127 a~~s~~~a~ 135 (666)
|++++.+.+
T Consensus 128 a~~t~~lGl 136 (144)
T cd08766 128 AIATAETGL 136 (144)
T ss_pred HHHHHHHHH
Confidence 555554443
No 177
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=27.09 E-value=34 Score=19.84 Aligned_cols=11 Identities=36% Similarity=1.355 Sum_probs=8.9
Q ss_pred cccchhHHHHH
Q 005974 4 VVGCNLCLISC 14 (666)
Q Consensus 4 ~~~~~~~~~~~ 14 (666)
=+||+.|...|
T Consensus 10 CiGC~~C~~AC 20 (22)
T PF12797_consen 10 CIGCGACEVAC 20 (22)
T ss_pred ccCchhHHHhh
Confidence 37999998876
No 178
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=26.51 E-value=2.8e+02 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=23.0
Q ss_pred cCCCchhHHHHHHHHHHHHhhhhHHhHhhh
Q 005974 78 SAFFPYRWVLMQFGSFIILCGLTHFISLWT 107 (666)
Q Consensus 78 ~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~ 107 (666)
.++.........++.+.++.|..++...+.
T Consensus 16 ~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 16 NPDASLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445666777888888999999988887
No 179
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=26.33 E-value=2.3e+02 Score=31.69 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=46.5
Q ss_pred HHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 61 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHI 140 (666)
Q Consensus 61 a~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l~~~ 140 (666)
.+..+.+|+.+++++-+.|...-.|.+.++++. .++.++++....+.+ .+...+.++++++..+.+.+.
T Consensus 191 ~~~~~lip~~l~~~~~g~k~~~~~~p~~L~~gl--~~~~~~~~~a~~~gp---------el~~ii~~l~~l~~~~~~~r~ 259 (530)
T TIGR00795 191 PFISLLIPFFLVFLMDGWKGIKETFPAVLVAGL--SFAIPQFLSSNYLGP---------ELPSILGALVSLVITALFLKF 259 (530)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHccc---------cHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999988777776667777777777 677788776665542 344555555665555555553
No 180
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=26.13 E-value=1.5e+02 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.7
Q ss_pred CCCCCceEEecCch
Q 005974 641 DLTGPKPLFRDNDQ 654 (666)
Q Consensus 641 ~~~~~~iLvvDD~~ 654 (666)
+.+|++||||||=-
T Consensus 89 ~v~gk~VLlVDDIi 102 (178)
T PRK15423 89 DIRGKDVLIVEDII 102 (178)
T ss_pred CCCCCEEEEEeeec
Confidence 46899999999954
No 181
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=25.98 E-value=47 Score=20.79 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.6
Q ss_pred EEEEEeecCCC
Q 005974 543 LRVQVNDSGCG 553 (666)
Q Consensus 543 l~i~V~D~G~G 553 (666)
..|+|.|+||-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999974
No 182
>TIGR00346 azlC 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD.
Probab=25.94 E-value=5.5e+02 Score=24.94 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=36.9
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhcc
Q 005974 58 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 109 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~ 109 (666)
.=|+++|+.+++..+....+.- +.+....+...++..|..|++.+-.+.
T Consensus 10 lPi~lgyip~G~afGila~~~G---ls~~~a~lmS~~vfAGaaQf~~v~ll~ 58 (221)
T TIGR00346 10 IPILAGFLFLGIAYGILMVQLG---FDYKYPLFMSLFIYAGSVEFVAATLLS 58 (221)
T ss_pred ChHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4468899999999998775443 556666677778899999988876543
No 183
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=25.72 E-value=74 Score=30.55 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=35.4
Q ss_pred eEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCC
Q 005974 484 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 556 (666)
Q Consensus 484 ~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~ 556 (666)
++.|||.+-+-+-.+.++|+.++.+-...---....+ .-+++|.-+|.|||.
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYK---------------------Gk~iSvmg~GmGipS 69 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYK---------------------GKKISVMGHGMGIPS 69 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceec---------------------CcEEEEEEecCCCcc
Confidence 3558999999999999999999885321110011111 147889999999884
No 184
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=25.54 E-value=1e+02 Score=20.78 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHhhhhHHhHhh
Q 005974 82 PYRWVLMQFGSFIILCGLTHFISLW 106 (666)
Q Consensus 82 ~~~~~~~~f~~fi~~cg~~h~~~i~ 106 (666)
|+.+...++++|.+++-+.|++..-
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777788888888889987664
No 185
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=25.37 E-value=7.6e+02 Score=28.53 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=90.9
Q ss_pred cchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEE-Ee------eccccccC----cccccCChhHHHHhcccCceE
Q 005974 189 LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YT------LNNQIQIG----SSVPINLPIVTDVFNSAQAMR 257 (666)
Q Consensus 189 ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~------~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~ 257 (666)
.+....+..++-.+...+.+.+|.+.+++......... .. ...+.... ....++....+.+-.++...-
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~g~va~t~~~~n 260 (707)
T KOG3689|consen 181 TDRESIFPKILYTARSLLQCTRCSIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKKLLDYGLRGYVASTGEGLN 260 (707)
T ss_pred cchhcccchhhhhhhhhhhhcccceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHhhhhhhhhheeecccCcCC
Confidence 35566666666666777788899998887654432111 00 00000000 011123344455666777777
Q ss_pred ccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEE-eeCCCCCccchhhhHHHHHHHHHHH
Q 005974 258 LPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLM-LPTDGGRKWRDHELELIDVVADQVA 336 (666)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~-~~~~~~~~~~~~e~~ll~~va~~~a 336 (666)
+++......+.........+....+++|+... .+..+||.. ++...+..|+..+..+.+..+..++
T Consensus 261 i~~~~~~~~f~~q~d~~~~~~~~il~~pi~~~-------------~~~~igv~~~~nk~~g~~f~~~de~~~~~~~~~~g 327 (707)
T KOG3689|consen 261 ISNAIADPRFDKQVDEDGTGIRPILCIPIKNK-------------KGEVIGVQQLVNKEDGNPFSRNDEDLFEAFTIFCG 327 (707)
T ss_pred CCCccccccccccccccccccceeEEEecccc-------------cCceecceeeeccccCCccccchHHHHHHHHHHHh
Confidence 77776666655433223333444667775433 233455555 4444556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005974 337 VALSHAAILEDSMRARNQ 354 (666)
Q Consensus 337 ~al~~a~l~~~~~~~~~~ 354 (666)
..+.++..+......+.+
T Consensus 328 l~i~~~~~y~~~~~s~~r 345 (707)
T KOG3689|consen 328 LSIHNTHMYSKINKSEPR 345 (707)
T ss_pred hhhhhhhhHHHHhhhccc
Confidence 999999888776655433
No 186
>PF13813 MBOAT_2: Membrane bound O-acyl transferase family
Probab=25.14 E-value=2.1e+02 Score=22.70 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=40.1
Q ss_pred CCCCchhhHHHHHHhhhHHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccc
Q 005974 41 TQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV 110 (666)
Q Consensus 41 ~~~~~~~~~~~~~~~sd~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~ 110 (666)
.+|.. .|-|.....+..++++..-.... -+.++...++++|. +.|+.|....+....
T Consensus 16 ~fWg~----~WHq~~r~~~~~~~~~~~~~~~~--------~~~~r~~~l~~aF~-~SGl~H~~~~~~~~~ 72 (83)
T PF13813_consen 16 RFWGR----RWHQLFRRPFSSIGYFPVRRVLG--------SKASRYLQLFGAFL-ISGLMHEAGDWYMSR 72 (83)
T ss_pred HHHhh----HHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHH-HHHHHHHHHHHhccC
Confidence 46643 25566788888877665433333 23788888899985 899999999988664
No 187
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.29 E-value=2.4e+02 Score=32.69 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHHHHhhcc
Q 005974 488 DEKRLMQTILNIVGNAVKFT 507 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~ 507 (666)
.++++.+=|...|++|-+--
T Consensus 612 aEtriKldLfsaLg~akrq~ 631 (697)
T PF09726_consen 612 AETRIKLDLFSALGDAKRQL 631 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888877643
No 188
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.55 E-value=6.2e+02 Score=26.59 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Q 005974 342 AAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLE 403 (666)
Q Consensus 342 a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~ 403 (666)
+++-.|. ..|++|.++..++++.++.+.+.++.+..++..+.-.|++-+.+..-+-+.+..
T Consensus 94 ~RL~~EL-~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 94 ARLEFEL-EQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 3444444 446688888889999999999999999999999998888777777666665543
No 189
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=23.20 E-value=2.1e+02 Score=26.76 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=11.6
Q ss_pred CCCCCceEEecCch
Q 005974 641 DLTGPKPLFRDNDQ 654 (666)
Q Consensus 641 ~~~~~~iLvvDD~~ 654 (666)
+.+|++||||||--
T Consensus 94 ~v~gk~VLIVDDIi 107 (181)
T PRK09162 94 SLKGRTVLVVDDIL 107 (181)
T ss_pred CCCCCEEEEEcccc
Confidence 45899999999954
No 190
>PF13974 YebO: YebO-like protein
Probab=22.32 E-value=2.5e+02 Score=22.37 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhhccc
Q 005974 130 SCITALMLVHIIPDLLSVK 148 (666)
Q Consensus 130 s~~~a~~l~~~ip~~l~~~ 148 (666)
++.-++.+|.|+..+-...
T Consensus 7 ~~lv~livWFFVnRaSvRA 25 (80)
T PF13974_consen 7 VLLVGLIVWFFVNRASVRA 25 (80)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3344556777777765543
No 191
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=22.24 E-value=3.5e+02 Score=29.39 Aligned_cols=38 Identities=13% Similarity=-0.028 Sum_probs=28.4
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccc
Q 005974 72 IYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV 110 (666)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~ 110 (666)
-+++.++++ |+++-+.+...|-++|....++.+..-+.
T Consensus 184 ~~svl~~~~-p~~~gl~~lp~~y~~~~~~n~f~ivy~Gs 221 (512)
T KOG2493|consen 184 DHSVLRAAN-PVKNGLRLLPVFYFITVSINVFGIVYDGS 221 (512)
T ss_pred HHHHHHhcC-chhhchhhcchhhhhhhhheeeeEEecCc
Confidence 344455677 99999999999988888888777755443
No 192
>COG4420 Predicted membrane protein [Function unknown]
Probab=22.24 E-value=6.6e+02 Score=23.61 Aligned_cols=23 Identities=0% Similarity=-0.028 Sum_probs=10.5
Q ss_pred HHhHhhhccccchhHHHHHHHHH
Q 005974 101 HFISLWTFTVHSKAVAVVMTIAK 123 (666)
Q Consensus 101 h~~~i~~~~~~~~~~~~~~~~~k 123 (666)
.+..+....+..||+.++-.++.
T Consensus 75 Nl~~~~~~~wDpyPFi~LnLllS 97 (191)
T COG4420 75 NLFLVPGLAWDPYPFILLNLLLS 97 (191)
T ss_pred HHhhhcCCcCCCccHHHHHHHHH
Confidence 33333332234577765444433
No 193
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=22.16 E-value=2.3e+02 Score=27.91 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=45.0
Q ss_pred EEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 307 VMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARR 367 (666)
Q Consensus 307 ~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~ 367 (666)
..++.......+.--..-..+++.+...+...+....+.++..+.++++++..++++++.+
T Consensus 172 a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~ 232 (244)
T COG1938 172 ALVLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEE 232 (244)
T ss_pred eEEEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666677888888888888888888888888888777777666655544
No 194
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=21.91 E-value=3.9e+02 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 340 SHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHE 386 (666)
Q Consensus 340 ~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHe 386 (666)
.+..+........++|++++.+++...+++++.+...++|...+.-+
T Consensus 29 l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~ 75 (308)
T PF11382_consen 29 LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPR 75 (308)
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667788888888888888888777788887777655
No 195
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.88 E-value=5.3e+02 Score=26.12 Aligned_cols=11 Identities=27% Similarity=-0.027 Sum_probs=6.1
Q ss_pred ceEEecCchhh
Q 005974 646 KPLFRDNDQIA 656 (666)
Q Consensus 646 ~iLvvDD~~~~ 656 (666)
.|+|++.+--|
T Consensus 267 ~V~Vi~~~~~~ 277 (283)
T TIGR00219 267 YVLLVWNDVPN 277 (283)
T ss_pred EEEEEeCCCCC
Confidence 56666554433
No 196
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=1e+02 Score=30.79 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005974 346 EDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRT 389 (666)
Q Consensus 346 ~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~ 389 (666)
.+..+..++|.++++||++..+++++.+++..+ .+++-+-+|
T Consensus 60 ~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~--~g~~~~~nN 101 (313)
T KOG3088|consen 60 KDLAKKQAELLKKQEELRRKEQELDRRERALAR--AGIVIRENN 101 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh--ccCcccccC
No 197
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.46 E-value=1.5e+02 Score=30.70 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=14.8
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhhc
Q 005974 55 ISDILIALAYFSIPVELIYFVQKS 78 (666)
Q Consensus 55 ~sd~~ia~ay~~ip~~l~~f~~~~ 78 (666)
++|.++++.-+.+...++..+++.
T Consensus 25 vgdi~~~~~il~ll~~~~~~~~~~ 48 (318)
T PF12725_consen 25 VGDILYYLLILFLLYYLIRLIRKI 48 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777766666666666555543
No 198
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=21.29 E-value=6.1e+02 Score=24.45 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 005974 85 WVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVK 148 (666)
Q Consensus 85 ~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l~~~ip~~l~~~ 148 (666)
..++|||+. -|+.|.+....-.....+...+-|+..++ ++||++|+.=||-+...-
T Consensus 130 P~lGL~GTV---~GIm~aF~~i~~~~~~~~a~vA~GIseAL-----~aTA~GL~vAIPAvi~yn 185 (216)
T COG0811 130 PFLGLLGTV---WGIMPAFIGIGAGGGADLAVVAPGISEAL-----IATAIGLFVAIPAVVAYN 185 (216)
T ss_pred hHHHHHHHH---HHHHHHHHHHhccCCCCHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 345555553 56666666655222223444445555544 448899998888877653
No 199
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=21.14 E-value=68 Score=35.55 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.6
Q ss_pred EEEEEeecCCCCCCCCh
Q 005974 543 LRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 543 l~i~V~D~G~Gi~~~~~ 559 (666)
-.++|.|+|+||..+++
T Consensus 102 ~tlti~DtGIGMTk~dL 118 (656)
T KOG0019|consen 102 RTITIQDTGIGMTKEDL 118 (656)
T ss_pred ceEEEEecCCCcCHHHH
Confidence 57899999999998765
No 200
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=21.13 E-value=2.6e+02 Score=22.23 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 005974 374 HARNDFRAVMNHEMRTLMH 392 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~ 392 (666)
....+|...|.+|++||..
T Consensus 28 ~~~~~F~~AL~DDLNTp~A 46 (81)
T cd07955 28 ALVARLREALADDLDTPKA 46 (81)
T ss_pred HHHHHHHHHHHhhCChHHH
Confidence 3567899999999999953
No 201
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=21.13 E-value=8.8e+02 Score=24.63 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHH
Q 005974 177 HVRMLTHEIRSTLDRHTILKTTLVEL 202 (666)
Q Consensus 177 ~l~~lt~~i~~~ld~~~il~~~~~~l 202 (666)
......+.+.+..|.++++.-.-+++
T Consensus 118 ~~~r~~~~~~~~~d~~ell~L~e~~v 143 (289)
T TIGR01620 118 GRAAWKETENEVIDGPELIELAEREV 143 (289)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHh
Confidence 34455555666666666666555544
No 202
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=21.05 E-value=1e+02 Score=17.93 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=12.9
Q ss_pred hHHHHHHHhhHHHHHHH
Q 005974 57 DILIALAYFSIPVELIY 73 (666)
Q Consensus 57 d~~ia~ay~~ip~~l~~ 73 (666)
+.+||++-++|...+.|
T Consensus 5 EvlIa~~i~~i~~~g~~ 21 (22)
T PF13633_consen 5 EVLIAIAILGILALGAY 21 (22)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 56788888888877654
No 203
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=20.68 E-value=3.3e+02 Score=30.35 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005974 62 LAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHII 141 (666)
Q Consensus 62 ~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l~~~i 141 (666)
+++|.||.+.++|-..-- +.|.|+.-+|-...+.....--+.|..+|. ..+.+.+|.+.+.++.
T Consensus 159 l~~~~ip~~~gff~l~~~-i~~~~~~~i~nyil~~~a~i~glfiismwl---------------ivla~s~~~fi~lp~~ 222 (952)
T TIGR02921 159 LAFFAIPAAAGFFELLEE-IEFEHLGDIFNYILFHTAFICGLFIISMWL---------------IVLAFSATLFIALPFA 222 (952)
T ss_pred HHHHhhhHHhHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q ss_pred hhhhccccHHHHHHHHHHHHHHH
Q 005974 142 PDLLSVKTRELFLKNRADELDRE 164 (666)
Q Consensus 142 p~~l~~~s~e~~~~~~a~~l~~~ 164 (666)
-.++-+.+-....+.-+.+..+.
T Consensus 223 lt~lyi~~~~k~~k~~~a~~g~~ 245 (952)
T TIGR02921 223 LTALYIHEFAKELKAAAAEHGNA 245 (952)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc
No 204
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.66 E-value=8.6e+02 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhhchhHHhHHHH
Q 005974 157 RADELDREMGLILTQEETGRHVR 179 (666)
Q Consensus 157 ~a~~l~~~~~~~~~~~~~~~~l~ 179 (666)
..++|+++...++.+....+.+.
T Consensus 77 en~~L~~e~~~l~~~~~~~~~l~ 99 (276)
T PRK13922 77 ENEELKKELLELESRLQELEQLE 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666555555544443333
No 205
>PRK10420 L-lactate permease; Provisional
Probab=20.19 E-value=3.7e+02 Score=30.16 Aligned_cols=71 Identities=6% Similarity=0.078 Sum_probs=46.3
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhHHhHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 58 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALML 137 (666)
Q Consensus 58 ~~ia~ay~~ip~~l~~f~~~~~~~~~~~~~~~f~~fi~~cg~~h~~~i~~~~~~~~~~~~~~~~~k~~~a~~s~~~a~~l 137 (666)
....+-.+.+|+.+++++-+.|...-.|-+.+++++ .++.++++..+.+.+ .+...+.++++++..+..
T Consensus 197 ~~l~~~~~~~~f~lv~i~~g~k~~~~~~p~~L~~g~--~f~~~~~~~a~~~gp---------eL~~ii~~lv~l~~~~~~ 265 (551)
T PRK10420 197 RQLPFLTIIVLFWIMAIMDGWRGVKETWPAVVVAGG--SFAIAQYLSSNFIGP---------ELPDIISSLVSLVCLTLF 265 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCc---------chHHHHHHHHHHHHHHHH
Confidence 444555678888888888766666666777777776 777788777665543 344555555655555554
Q ss_pred HH
Q 005974 138 VH 139 (666)
Q Consensus 138 ~~ 139 (666)
.+
T Consensus 266 ~k 267 (551)
T PRK10420 266 LK 267 (551)
T ss_pred Hh
Confidence 44
No 206
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.10 E-value=5.3e+02 Score=21.68 Aligned_cols=15 Identities=0% Similarity=0.076 Sum_probs=6.1
Q ss_pred HHHHHHhhhhchhHH
Q 005974 160 ELDREMGLILTQEET 174 (666)
Q Consensus 160 ~l~~~~~~~~~~~~~ 174 (666)
+++++.+.++.+++.
T Consensus 38 ~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 38 AQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
Done!