Query 005974
Match_columns 666
No_of_seqs 462 out of 4066
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 12:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 2.7E-35 9.2E-40 296.3 31.3 230 368-618 12-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 4.5E-33 1.6E-37 281.6 30.1 233 361-620 25-259 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 100.0 2.1E-31 7.1E-36 283.9 23.1 227 371-620 116-376 (388)
4 3jz3_A Sensor protein QSEC; he 100.0 2.5E-32 8.5E-37 267.8 13.3 217 376-620 2-220 (222)
5 3d36_A Sporulation kinase B; G 100.0 1.6E-30 5.4E-35 258.9 21.6 217 373-621 11-229 (244)
6 2btz_A Pyruvate dehydrogenase 100.0 2.8E-30 9.4E-35 275.6 23.4 220 378-620 97-353 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 1.8E-29 6.1E-34 269.2 29.5 218 378-619 97-352 (394)
8 3a0r_A Sensor protein; four he 100.0 8.4E-30 2.9E-34 267.8 24.1 214 374-618 130-346 (349)
9 2q8g_A [pyruvate dehydrogenase 100.0 1.4E-29 4.8E-34 271.2 25.1 219 376-618 106-364 (407)
10 4fpp_A Phosphotransferase; fou 100.0 7.9E-29 2.7E-33 246.8 21.8 195 379-615 49-246 (247)
11 1y8o_A [pyruvate dehydrogenase 100.0 9.4E-29 3.2E-33 265.5 23.9 220 376-619 118-376 (419)
12 1b3q_A Protein (chemotaxis pro 99.9 6.7E-27 2.3E-31 247.2 15.2 244 375-661 9-304 (379)
13 3ehh_A Sensor kinase (YOCF pro 99.9 5.7E-25 1.9E-29 214.8 21.2 189 374-617 26-216 (218)
14 1id0_A PHOQ histidine kinase; 99.9 2.7E-23 9.1E-28 190.6 19.2 146 447-619 2-147 (152)
15 1ysr_A Sensor-type histidine k 99.9 9.2E-23 3.1E-27 186.6 17.8 146 445-617 4-149 (150)
16 1bxd_A ENVZ(290-450), protein 99.9 2.4E-22 8.1E-27 186.3 18.0 150 443-620 4-153 (161)
17 3sl2_A Sensor histidine kinase 99.9 3.2E-22 1.1E-26 188.5 18.8 153 448-621 2-156 (177)
18 3a0y_A Sensor protein; ATP-LID 99.9 6E-22 2E-26 181.5 19.0 146 445-618 2-149 (152)
19 1r62_A Nitrogen regulation pro 99.9 4.2E-22 1.4E-26 184.1 14.8 156 443-617 2-159 (160)
20 1i58_A Chemotaxis protein CHEA 99.9 2.1E-22 7.3E-27 191.9 11.5 151 446-617 2-189 (189)
21 3ehg_A Sensor kinase (YOCF pro 99.8 1.5E-19 5E-24 160.5 14.6 125 449-617 2-126 (128)
22 3zxo_A Redox sensor histidine 99.8 1.9E-18 6.5E-23 153.4 14.9 125 447-617 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.7 1.3E-17 4.5E-22 146.8 14.5 122 450-617 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.6 5.7E-16 2E-20 140.4 11.4 104 487-620 35-142 (145)
25 1mu5_A Type II DNA topoisomera 99.6 6.7E-15 2.3E-19 157.5 12.6 117 485-619 26-150 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.6 6.1E-15 2.1E-19 159.5 11.2 114 488-619 28-149 (530)
27 3p01_A Two-component response 99.5 1E-12 3.6E-17 123.9 15.5 170 158-343 12-181 (184)
28 2q2e_B Type 2 DNA topoisomeras 99.4 2.1E-12 7.1E-17 141.5 12.2 115 485-619 31-154 (621)
29 3e0y_A Conserved domain protei 99.3 3.7E-12 1.3E-16 119.0 11.7 170 166-349 5-174 (181)
30 3trc_A Phosphoenolpyruvate-pro 99.3 2E-11 6.9E-16 112.8 16.0 164 172-349 4-169 (171)
31 2e4s_A CAMP and CAMP-inhibited 99.3 1.5E-11 5E-16 116.0 12.9 171 167-351 4-186 (189)
32 3k2n_A Sigma-54-dependent tran 99.3 4.2E-11 1.4E-15 111.6 14.6 164 172-349 2-174 (177)
33 4glq_A Methyl-accepting chemot 99.3 3.6E-11 1.2E-15 111.6 12.9 154 181-348 2-161 (171)
34 2zmf_A CAMP and CAMP-inhibited 99.2 5.3E-11 1.8E-15 112.0 13.5 164 172-349 9-184 (189)
35 3ci6_A Phosphoenolpyruvate-pro 99.2 2.2E-10 7.7E-15 105.2 15.6 164 170-347 4-169 (171)
36 3o5y_A Sensor protein; GAF dom 99.2 1.1E-10 3.7E-15 107.6 11.2 155 188-358 3-160 (165)
37 3oov_A Methyl-accepting chemot 99.1 9.6E-10 3.3E-14 101.2 16.2 158 176-347 2-168 (169)
38 2lb5_A Sensor histidine kinase 99.1 2.8E-10 9.7E-15 109.3 10.5 168 166-347 6-203 (208)
39 1ykd_A Adenylate cyclase; GAF 99.0 3.7E-09 1.3E-13 112.3 16.2 170 169-351 192-386 (398)
40 2vjw_A GAF-B, GAF family prote 99.0 4E-09 1.4E-13 95.4 13.1 134 190-348 1-141 (149)
41 2qyb_A Membrane protein, putat 99.0 3E-09 1E-13 99.3 11.8 159 176-349 3-166 (181)
42 1mc0_A 3',5'-cyclic nucleotide 98.9 2E-08 6.8E-13 105.4 18.1 168 170-350 175-346 (368)
43 3dba_A CONE CGMP-specific 3',5 98.9 2.5E-09 8.4E-14 100.2 9.9 153 173-339 4-171 (180)
44 3ibj_A CGMP-dependent 3',5'-cy 98.9 1.1E-08 3.6E-13 116.8 17.2 169 172-355 177-351 (691)
45 1mc0_A 3',5'-cyclic nucleotide 98.9 1.7E-08 5.8E-13 105.9 17.2 163 174-350 12-175 (368)
46 2w3g_A DOSS, two component sen 98.9 7.6E-09 2.6E-13 93.2 11.4 146 187-348 3-152 (153)
47 3mmh_A FRMSR, methionine-R-sul 98.9 5.4E-08 1.8E-12 89.2 16.9 149 172-340 13-161 (167)
48 3cit_A Sensor histidine kinase 98.9 6.1E-08 2.1E-12 86.2 15.1 147 168-350 7-156 (160)
49 3hcy_A Putative two-component 98.9 5.9E-09 2E-13 94.2 8.9 143 188-346 1-144 (151)
50 1ykd_A Adenylate cyclase; GAF 98.8 1.2E-07 4.2E-12 100.5 19.9 167 172-352 5-195 (398)
51 3ibj_A CGMP-dependent 3',5'-cy 98.8 6.1E-08 2.1E-12 110.5 16.8 163 172-349 11-174 (691)
52 1vhm_A Protein YEBR; structura 98.7 3.1E-07 1.1E-11 86.3 15.2 152 171-344 24-176 (195)
53 2k2n_A Sensor protein, SYB-CPH 98.7 2E-07 6.7E-12 86.3 12.8 140 192-345 2-171 (172)
54 3nhq_A Bacteriophytochrome; ph 98.7 8.9E-07 3.1E-11 94.9 19.4 161 173-347 122-311 (505)
55 4e04_A Bacteriophytochrome (li 98.6 4.5E-07 1.5E-11 91.1 14.9 156 173-342 131-315 (327)
56 2ool_A Sensor protein; bacteri 98.6 4.2E-07 1.4E-11 92.4 14.9 160 172-345 143-331 (337)
57 3zq5_A Phytochrome-like protei 98.6 1.2E-06 4.1E-11 94.1 18.8 161 173-347 135-324 (520)
58 3s7o_A Bacteriophytochrome; bi 98.6 4.8E-07 1.6E-11 91.2 14.0 156 173-342 149-333 (343)
59 1f5m_A GAF; CGMP binding, sign 98.4 3.6E-06 1.2E-10 78.2 15.2 146 175-339 26-177 (180)
60 3rfb_A Putative uncharacterize 98.4 2.6E-06 9E-11 77.7 13.6 144 174-339 16-160 (171)
61 3ksh_A Putative uncharacterize 98.4 4.5E-06 1.5E-10 75.4 13.6 142 176-339 17-159 (160)
62 1b63_A MUTL; DNA mismatch repa 98.4 1.3E-06 4.6E-11 89.4 10.9 85 491-602 24-115 (333)
63 3ke6_A Protein RV1364C/MT1410; 98.3 8.2E-07 2.8E-11 93.9 9.0 90 488-618 294-387 (399)
64 1h7s_A PMS1 protein homolog 2; 98.3 1.1E-06 3.6E-11 91.0 8.9 85 491-602 34-125 (365)
65 3na3_A DNA mismatch repair pro 98.3 1.9E-06 6.4E-11 87.9 10.2 97 491-614 28-131 (348)
66 3eea_A GAF domain/HD domain pr 98.3 4.7E-06 1.6E-10 69.9 10.2 148 185-347 8-162 (162)
67 3bjc_A CGMP-specific 3',5'-cyc 98.3 1.1E-07 3.7E-12 111.1 0.0 171 169-352 146-330 (878)
68 3mm4_A Histidine kinase homolo 98.3 2.7E-07 9.3E-12 88.2 2.6 63 590-661 16-78 (206)
69 1ixm_A SPO0B, protein (sporula 98.1 1.3E-05 4.5E-10 74.8 11.4 141 378-568 23-171 (192)
70 3bjc_A CGMP-specific 3',5'-cyc 98.1 3E-07 1E-11 107.3 0.0 174 168-354 326-521 (878)
71 1kij_A DNA gyrase subunit B; t 98.1 1.3E-06 4.5E-11 91.2 4.7 84 486-593 31-127 (390)
72 4eho_A Bacteriophytochrome, PA 98.1 4.1E-05 1.4E-09 85.8 16.9 158 176-347 132-318 (635)
73 3h4l_A DNA mismatch repair pro 98.1 6.1E-06 2.1E-10 84.9 8.4 85 491-602 25-116 (367)
74 3zcc_A HAMP, osmolarity sensor 98.1 2E-05 6.9E-10 66.7 10.3 70 360-434 44-113 (114)
75 2wer_A ATP-dependent molecular 97.7 9.2E-06 3.1E-10 78.0 1.6 54 494-567 29-97 (220)
76 3zrx_A AF1503 protein, osmolar 97.5 0.00039 1.3E-08 58.5 8.7 64 367-435 51-114 (115)
77 1yc1_A HSP 86, heat shock prot 97.4 0.0001 3.5E-09 72.2 4.4 85 494-602 71-181 (264)
78 2ior_A Chaperone protein HTPG; 97.3 3.2E-05 1.1E-09 74.9 0.1 85 494-602 50-162 (235)
79 1qy5_A Endoplasmin; GRP94, NEC 97.3 2.5E-05 8.5E-10 76.7 -1.2 50 495-564 32-96 (269)
80 1s16_A Topoisomerase IV subuni 97.2 0.0005 1.7E-08 71.5 7.5 48 544-591 64-124 (390)
81 1ei1_A DNA gyrase B, GYRB; ATP 97.0 0.0013 4.6E-08 68.2 7.8 78 491-591 34-127 (391)
82 3t0h_A Heat shock protein HSP 96.9 0.00019 6.5E-09 68.6 0.6 85 494-602 35-145 (228)
83 2gqp_A Endoplasmin; GRP94, HSP 96.9 0.00028 9.5E-09 68.2 1.7 85 494-602 35-150 (236)
84 3peh_A Endoplasmin homolog; st 96.7 0.00063 2.1E-08 66.5 2.6 47 495-561 50-111 (281)
85 1y4s_A Chaperone protein HTPG; 96.5 0.0029 9.9E-08 68.5 6.4 52 494-565 30-96 (559)
86 3fv5_A DNA topoisomerase 4 sub 96.5 0.0044 1.5E-07 58.1 6.8 75 493-590 19-109 (201)
87 3cwv_A DNA gyrase, B subunit, 96.4 0.0032 1.1E-07 64.9 5.8 76 488-590 27-109 (369)
88 3o0i_A HSP90AA1 protein; HSP90 96.4 0.0004 1.4E-08 67.2 -1.0 50 494-563 63-127 (256)
89 2cg9_A ATP-dependent molecular 96.3 0.0026 8.8E-08 70.1 4.8 101 495-615 30-178 (677)
90 4duh_A DNA gyrase subunit B; s 96.2 0.008 2.7E-07 57.0 7.2 79 490-591 34-128 (220)
91 3nmq_A Heat shock protein HSP 96.2 0.00076 2.6E-08 64.5 -0.3 18 543-560 86-103 (239)
92 2ioq_A Chaperone protein HTPG; 95.7 0.0033 1.1E-07 68.9 2.1 52 494-565 30-96 (624)
93 1zxm_A TOPO IIA ATPase, DNA to 95.7 0.021 7.2E-07 59.2 8.0 80 489-590 50-146 (400)
94 2o1u_A Endoplasmin; GRP94, HSP 95.6 0.0036 1.2E-07 68.9 2.0 50 494-563 48-112 (666)
95 4emv_A DNA topoisomerase IV, B 95.5 0.012 4.2E-07 55.9 5.0 83 488-591 37-132 (226)
96 3ttz_A DNA gyrase subunit B; p 95.4 0.017 5.8E-07 53.8 5.4 48 488-558 28-78 (198)
97 4eu0_A PELD; C-DI-GMP, signali 95.3 0.15 5.2E-06 50.4 12.2 133 191-346 24-157 (298)
98 1pvg_A DNA topoisomerase II; G 94.6 0.058 2E-06 56.2 7.5 100 490-615 63-179 (418)
99 3ied_A Heat shock protein; HSP 93.8 0.016 5.4E-07 55.4 1.2 20 544-563 131-150 (272)
100 2w1r_A Spovt, stage V sporulat 93.7 0.21 7.2E-06 42.5 7.9 119 194-339 3-121 (123)
101 3lnu_A Topoisomerase IV subuni 93.5 0.15 5E-06 52.9 7.8 77 493-592 52-144 (408)
102 3e98_A GAF domain of unknown f 91.9 1.8 6.1E-05 41.7 12.6 158 154-340 77-242 (252)
103 4gfh_A DNA topoisomerase 2; to 87.4 0.79 2.7E-05 54.1 7.2 80 490-591 58-154 (1177)
104 3hzh_A Chemotaxis response reg 75.6 1 3.5E-05 39.5 1.7 19 643-661 35-53 (157)
105 4a2l_A BT_4663, two-component 74.4 1.5 5E-05 50.2 3.1 72 251-324 695-773 (795)
106 3ott_A Two-component system se 74.0 1.6 5.3E-05 49.7 3.2 72 252-325 661-740 (758)
107 3v9f_A Two-component system se 62.7 2.1 7.3E-05 48.8 1.1 69 254-324 691-767 (781)
108 3nhq_A Bacteriophytochrome; ph 57.4 8.8 0.0003 40.9 4.7 49 169-217 313-361 (505)
109 2ayx_A Sensor kinase protein R 56.9 11 0.00037 36.0 4.9 21 641-661 126-146 (254)
110 3n0r_A Response regulator; sig 40.0 12 0.0004 36.7 2.1 18 644-661 160-177 (286)
111 3zq5_A Phytochrome-like protei 33.5 61 0.0021 34.5 6.5 47 171-217 328-374 (520)
112 3ehh_A Sensor kinase (YOCF pro 31.0 2.8E+02 0.0097 24.6 11.2 24 452-475 132-155 (218)
113 3lmm_A Uncharacterized protein 29.0 1.5E+02 0.005 32.1 8.7 133 449-618 262-409 (583)
114 3szt_A QCSR, quorum-sensing co 29.0 3.5E+02 0.012 25.0 13.0 139 181-335 8-152 (237)
115 3rlb_A THIT; S-component, ECF 27.6 3.4E+02 0.012 24.4 9.8 55 51-109 88-143 (192)
116 3l39_A Putative PHOU-like phos 25.5 4E+02 0.014 24.5 11.3 31 404-434 123-153 (227)
117 3luf_A Two-component system re 24.0 32 0.0011 32.8 2.1 19 643-661 123-141 (259)
118 4dkl_A MU-type opioid receptor 23.5 4.4E+02 0.015 26.5 11.2 20 55-74 180-199 (464)
119 3uon_A Human M2 muscarinic ace 23.4 5.8E+02 0.02 25.6 12.5 19 86-105 390-408 (467)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=2.7e-35 Score=296.34 Aligned_cols=230 Identities=29% Similarity=0.472 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 005974 368 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL 444 (666)
Q Consensus 368 ~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l 444 (666)
++++..+.+.+|++.++|||||||++|.++++++.+. ...++.+++++.+.+.++++..++++++++++++.+...+
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 91 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI 91 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence 3445556688999999999999999999999998753 2345568899999999999999999999999999888888
Q ss_pred cccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeec
Q 005974 445 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK 520 (666)
Q Consensus 445 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~ 520 (666)
..+++++.++++++...+...+..+++.+.++.+...+..+.+|+..+.+++.||++||+||++.+ .+.+.+...+
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~ 171 (258)
T 2c2a_A 92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD 171 (258)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence 888999999999999999999999999998887655555677899999999999999999999753 3555544333
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCC-CCCccchHHHHHHHHHHhCCEEEE
Q 005974 521 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIWL 599 (666)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~I~v 599 (666)
+ .+.|+|+|+|+||+++..+++|+||++.+..... ..|+||||++||++++.|||+|++
T Consensus 172 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 172 G--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp T--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred C--------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence 2 3899999999999999999999999997755332 359999999999999999999999
Q ss_pred EecCCCCceEEEEEEEecC
Q 005974 600 DSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 600 ~S~~~g~Gt~~~i~lP~~~ 618 (666)
+|. +|+||+|+|.||...
T Consensus 232 ~s~-~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 232 ESE-VGKGSRFFVWIPKDR 249 (258)
T ss_dssp EEE-TTTEEEEEEEEECCC
T ss_pred Eec-CCCCcEEEEEeeCCC
Confidence 998 899999999999753
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=4.5e-33 Score=281.63 Aligned_cols=233 Identities=28% Similarity=0.378 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 005974 361 ALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLED 439 (666)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~ 439 (666)
++++..+++++.++.+.+|++.++||+||||++|.++++++.+. ..+++.+++++.+.+.++++..++++++++++.+.
T Consensus 25 ~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~ 104 (268)
T 4ew8_A 25 ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDA 104 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455556666788999999999999999999999999865 46778899999999999999999999999999998
Q ss_pred CCccccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEe
Q 005974 440 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASV 518 (666)
Q Consensus 440 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~ 518 (666)
+.......++++.++++++...+...+..+++.+.++.+.+.+. +.+|+..+.+|+.||+.||+||++. +.|.+.+..
T Consensus 105 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~-v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~ 183 (268)
T 4ew8_A 105 GEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARR 183 (268)
T ss_dssp TCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSCE-EEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCce-EecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 88888889999999999999999999999999999998776654 7789999999999999999999986 667776655
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEE
Q 005974 519 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIW 598 (666)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~ 598 (666)
.++ .+.|+|+|||+||+++..+++|++|++.+. .|+|+||++|+++++.|||+|+
T Consensus 184 ~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~i~ 238 (268)
T 4ew8_A 184 ALG--------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVKALVELHGGWVA 238 (268)
T ss_dssp CSS--------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHHHHHHHTTCEEE
T ss_pred cCC--------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHHcCCEEE
Confidence 433 399999999999999999999999996543 4889999999999999999999
Q ss_pred EEecCCCCceEEEEEEEecCCC
Q 005974 599 LDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 599 v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
++|. +++||+|+|.||....+
T Consensus 239 i~s~-~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 239 LESE-PGNGSTFTCHLPETQQP 259 (268)
T ss_dssp EEEC-TTSCEEEEEEEECCC--
T ss_pred EEec-CCCCEEEEEEecCCCCC
Confidence 9998 89999999999986544
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.98 E-value=2.1e-31 Score=283.87 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccce
Q 005974 371 KAIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 449 (666)
Q Consensus 371 ~~~~~~~~~~~~isHelr~PL~~I~-~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 449 (666)
+.++.+.+|++.++||+||||+.|. ++.+++.....+++.+++++.+.++..++..++++++++++.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 3355678999999999999999998 555555444446778999999999999999999999999999888888888899
Q ss_pred eHHHHHHHHHHHHHHHhhcC---CceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC---------cEEEEEE
Q 005974 450 NLQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIAS 517 (666)
Q Consensus 450 ~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g---------~v~i~~~ 517 (666)
++.+++++++..++..+..+ .+.+.+..+.+ ..+.+|+.+|.+|+.||+.||+||+.++ .|.+.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999988877 34455544443 3366799999999999999999999764 5777665
Q ss_pred eecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC---------------------CC
Q 005974 518 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC---------------------QT 576 (666)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~---------------------~~ 576 (666)
..++ ++.|+|+|+|+||+++.++++|++||+++.... ..
T Consensus 274 ~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (388)
T 1gkz_A 274 NNDV--------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPM 333 (388)
T ss_dssp ECSS--------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CC
T ss_pred eCCC--------------------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCc
Confidence 4332 499999999999999999999999999876421 12
Q ss_pred CCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 577 PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 577 ~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
.|+|+||++||.+++.|||+|+++|. +|.||+|+|.||.....
T Consensus 334 ~G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~ 376 (388)
T 1gkz_A 334 HGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGR 376 (388)
T ss_dssp SCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSC
T ss_pred CCccCCHHHHHHHHHHhCCEEEEEec-CCCcEEEEEEecCCCCC
Confidence 59999999999999999999999999 89999999999975443
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.97 E-value=2.5e-32 Score=267.83 Aligned_cols=217 Identities=22% Similarity=0.290 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 376 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
+.+|++.++||+||||++|.++++++..... +++.+++++.+.++++++..++++++++++.+.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 4579999999999999999999999876543 344477788899999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc-EEEEEEeecCCCCCCCCCCCCC
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFY 533 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-v~i~~~~~~~~~~~~~~~~~~~ 533 (666)
+++++..+...+..+++.+.++.+...+ .+.+|+..+.+|+.||++||+||++++. +.+.+ .. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~--~~-~----------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTL--NA-D----------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEE--CS-S-----------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEE--cc-C-----------
Confidence 9999999999999999999999877644 4778999999999999999999997654 43333 11 1
Q ss_pred ccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 005974 534 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 613 (666)
Q Consensus 534 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~ 613 (666)
.+.|+|||+||+++.++++|+||++.+.. ...|+|+||++||++++.|||+|+++|. +++||+|++.
T Consensus 147 ----------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~ 213 (222)
T 3jz3_A 147 ----------NFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVS 213 (222)
T ss_dssp ----------EEEEECSCC----------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEE
T ss_pred ----------eEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHHHHHHHcCCEEEEEcC-CCCcEEEEEe
Confidence 28899999999999999999999986532 2348999999999999999999999999 8999999999
Q ss_pred EEecCCC
Q 005974 614 VKLGICN 620 (666)
Q Consensus 614 lP~~~~~ 620 (666)
+|....+
T Consensus 214 ~P~~~~~ 220 (222)
T 3jz3_A 214 WLEHHHH 220 (222)
T ss_dssp CCCC---
T ss_pred ecCCCCC
Confidence 9975443
No 5
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=1.6e-30 Score=258.89 Aligned_cols=217 Identities=21% Similarity=0.432 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeH
Q 005974 373 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 451 (666)
Q Consensus 373 ~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 451 (666)
.+.+++|++.++||+||||++|.++++++.+... +++.+++++.+.+.++++..++++++++++.+.. ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 3447789999999999999999999999987655 4556789999999999999999999999886543 4568999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC-CCcEEEEEEeecCCCCCCCCCC
Q 005974 452 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPP 530 (666)
Q Consensus 452 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~-~g~v~i~~~~~~~~~~~~~~~~ 530 (666)
..+++++...+...+..+++.+.+..++ ..+.+|+..+.+++.||+.||+||++ ++.+.+.+...++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------
Confidence 9999999999999988888888887643 34778999999999999999999995 4566666655433
Q ss_pred CCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 005974 531 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 610 (666)
Q Consensus 531 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~ 610 (666)
++.|+|+|+|+||+++..+++|+||++++. ..|.|+||++|+++++.|||+|++++. +++||+|
T Consensus 155 -----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~----~~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~~ 218 (244)
T 3d36_A 155 -----------RVLIRIADTGVGMTKEQLERLGEPYFTTKG----VKGTGLGMMVVYRIIESMNGTIRIESE-IHKGTTV 218 (244)
T ss_dssp -----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSG----GGCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEE
T ss_pred -----------EEEEEEEecCCCCCHHHHHHHhcccccCCC----CCCcchhHHHHHHHHHHcCCEEEEEec-CCCcEEE
Confidence 399999999999999999999999998653 248899999999999999999999998 8999999
Q ss_pred EEEEEecCCCC
Q 005974 611 TFLVKLGICNN 621 (666)
Q Consensus 611 ~i~lP~~~~~~ 621 (666)
+|.||+...+.
T Consensus 219 ~i~lP~~~~~~ 229 (244)
T 3d36_A 219 SIYLPLASSPS 229 (244)
T ss_dssp EEEEECCC---
T ss_pred EEEecCCCCCC
Confidence 99999865443
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.97 E-value=2.8e-30 Score=275.63 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=174.0
Q ss_pred HHHHHHHHHHhh-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhC-CCcccc
Q 005974 378 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 445 (666)
Q Consensus 378 ~~~~~isHelr~-----PL~~I~~~~~~l~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~ll~~~~~~~-~~~~l~ 445 (666)
+++..++||||| ||+.|.++++++.....++. .+++++ .+.+.+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 467778899999 89999999999886544433 344777 488888898 9999999999876 455666
Q ss_pred c----cceeHHHHHHHHHHHHHHHhhc-----CCceEEEEe--CCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc---
Q 005974 446 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 511 (666)
Q Consensus 446 ~----~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~--~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~--- 511 (666)
. +++++.++++++++.++..+.. +++.+.+.. .+..+..+.+|+.+|.+|+.||+.||+||+++++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 7999999999999999998876 888888744 1233445788999999999999999999997654
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCC------CCCCCCcc
Q 005974 512 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SCQTPRAG 580 (666)
Q Consensus 512 -----v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~g~G 580 (666)
|.+.+...++ ++.|+|+|+|+||+++.++++|++||+++.. .....|+|
T Consensus 255 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEE--------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCcc
Confidence 7777654433 4999999999999999999999999998764 22235999
Q ss_pred chHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 581 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 581 lGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
+||++||.+++.|||+|+++|. +|+||+|+|.||....+
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~ 353 (394)
T 2btz_A 315 YGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALSTD 353 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTTT
T ss_pred CCHHHHHHHHHHhCCEEEEEec-CCCceEEEEEecCCCCC
Confidence 9999999999999999999998 89999999999986533
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.97 E-value=1.8e-29 Score=269.20 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHhhCCCcccc
Q 005974 378 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 445 (666)
Q Consensus 378 ~~~~~isHelr~-----PL~~I~~~~~~l~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~ll~-~~~~~~~~~~l~ 445 (666)
+++..++||||| ||+.|.++++++.... ..++.+++++ .+.+.+.+| +++++++ +++. .+.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 456678899999 8999999999776532 3456688888 689999999 9999998 6665 5555666
Q ss_pred c----cceeHHHHHHHHHHHHHHHhhcC-----CceEEEEe--CCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc---
Q 005974 446 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 511 (666)
Q Consensus 446 ~----~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~--- 511 (666)
. +++++.++++++++.++..+..+ ++.+.++. .+..+..+.+|+.+|.+|+.||+.||+||+.+++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 78999999999999999998887 88887754 2333455888999999999999999999997654
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCC------CC-CCCCc
Q 005974 512 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SC-QTPRA 579 (666)
Q Consensus 512 -----v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~-~~~g~ 579 (666)
|.+.+...++ .+.|+|+|+|+||+++.++++|++|++++.. .. ...|+
T Consensus 254 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 313 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE--------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGF 313 (394)
T ss_dssp SSCCCEEEEEEECSS--------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCS
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCc
Confidence 7777655433 4999999999999999999999999998764 22 23599
Q ss_pred cchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 005974 580 GLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 619 (666)
Q Consensus 580 GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~ 619 (666)
|+||++||.+++.|||+|+++|. +|.||+|+|.||....
T Consensus 314 GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~ 352 (394)
T 2e0a_A 314 GYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALSS 352 (394)
T ss_dssp SCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred ccCHHHHHHHHHHhCCEEEEEec-CCccEEEEEEeCCCCC
Confidence 99999999999999999999998 8999999999998653
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=8.4e-30 Score=267.83 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHH
Q 005974 374 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 452 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 452 (666)
+++++|++.++||+||||++|.++++++.+... +++.+++++.+.+.++++..++++++++++. .......++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 346789999999999999999999999987543 3455789999999999999999999999994 234566789999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC-CCcEEEEEEeecCCCCCCCCCCC
Q 005974 453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 453 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~-~g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
++++++...+...+..+++.+.++.++..+ .+.+|+..+.+|+.||++||+||++ +|.+.+.+...++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----------
Confidence 999999999999988899999998876644 4778999999999999999999995 5777777765443
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHH-HhCCEEEEEecCCCCceEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSEGLDKGSTV 610 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~I~v~S~~~g~Gt~~ 610 (666)
.+.|+|+|||+|||++..+++|+||++++. .|+|+||++||++++ .|||+++++|. + +||+|
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-----~g~GlGL~i~~~~v~~~~gg~i~~~~~-~-~Gt~f 338 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR-E-NGVVF 338 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHHHHHHHHTTCSBCCEEEC-S-SEEEE
T ss_pred ----------EEEEEEEECCCCCChHHHhhcCCCCccCCC-----CCccchHHHHHHHHHHhCCCEEEEEeC-C-CcEEE
Confidence 399999999999999999999999998653 489999999999998 89999999997 4 59999
Q ss_pred EEEEEecC
Q 005974 611 TFLVKLGI 618 (666)
Q Consensus 611 ~i~lP~~~ 618 (666)
+|.||...
T Consensus 339 ~i~lP~~~ 346 (349)
T 3a0r_A 339 IFEIPKTP 346 (349)
T ss_dssp EEEEESCT
T ss_pred EEEecCCC
Confidence 99999753
No 9
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.97 E-value=1.4e-29 Score=271.18 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhC----C
Q 005974 376 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 440 (666)
Q Consensus 376 ~~~~~~~isHelr~-----PL~~I~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~ll~~~~~~~----~ 440 (666)
+..|.+.+ ||||| ||+.|.++++++.....+ ++.+++++. +.+.+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 34566655 99999 999999999977754332 334677887 77778888 9999999999864 2
Q ss_pred ---CccccccceeHHHHHHHHHHHHHHHhhcC-----CceEEEEe--CCCCCceEEecHHHHHHHHHHHHHHHhhccCCC
Q 005974 441 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 510 (666)
Q Consensus 441 ---~~~l~~~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g 510 (666)
......+++++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+.+|.+|+.||+.||+||+..+
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567779999999999999999988877 88888766 123344578899999999999999999999764
Q ss_pred --------cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCC-------CCC
Q 005974 511 --------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS-------SCQ 575 (666)
Q Consensus 511 --------~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-------~~~ 575 (666)
.|.+.+...++ .+.|+|+|+|+||+++.++++|++||+++.. ...
T Consensus 263 ~~~~~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE--------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred cccCCCCCCEEEEEEeCCC--------------------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 47777655333 3999999999999999999999999998764 122
Q ss_pred CCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 005974 576 TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 576 ~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
..|+|+||+|||.+++.|||+|+++|. +|.||+|+|.||...
T Consensus 323 ~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 323 LAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALS 364 (407)
T ss_dssp SSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSG
T ss_pred CCCcCCCHHHHHHHHHHhCCEEEEEEc-CCCceEEEEEECCCC
Confidence 359999999999999999999999998 899999999999865
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.96 E-value=7.9e-29 Score=246.80 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=150.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHH
Q 005974 379 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 458 (666)
Q Consensus 379 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 458 (666)
+++.|+|||||||++|.+++++|.+...++..+++++.|.+.++++..+++ +.++..+. .....++++.++.+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~----~~r~~~~~-~~~~~~~~~~~l~~-- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQ----FTRVAFGA-SASAENFDSRELEK-- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHTTC-CSSCCCEEHHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH----HHHHhhcc-ccccccccHHHHHH--
Confidence 778899999999999999999999887778888899999999888877664 44443222 33445788776543
Q ss_pred HHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCCCCCCCCCccCC
Q 005974 459 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVST 537 (666)
Q Consensus 459 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~~~~~~~~~~~~ 537 (666)
.++.....+++.+..+.++. . .+..+.|++.||+.||+||++. |.+.+.+...++
T Consensus 122 --~~~~~~~~~~i~l~~~~~~~----~--~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~---------------- 177 (247)
T 4fpp_A 122 --LAQGVFAHVRPTLDWQIEPQ----A--MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADG---------------- 177 (247)
T ss_dssp --HHHHHHTTSSSEEEECCCSC----E--ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETT----------------
T ss_pred --HHHHHHHhhhhhccccccch----h--hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECC----------------
Confidence 34444556777777654332 2 3457889999999999999976 466666665443
Q ss_pred CCceEEEEEEeecCCC--CCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 538 DGHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 538 ~~~~~l~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
.+.|+|+|+|+| ++++..+++|++|++.+ ..|+||||++||++++.|||+|+++|. +| |++|+++||
T Consensus 178 ----~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-----~~G~GLGLai~~~iv~~hGG~i~v~s~-~~-G~~f~v~LP 246 (247)
T 4fpp_A 178 ----RFSIIADAKGPRARLRPEVLAGLKGEPLAEG-----LGGPWVQAAYLNALVRAAGGQIAVEIG-ED-RASIAAWVP 246 (247)
T ss_dssp ----EEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-----CHHHHHHHHHHHHHHHHTTCEEEEEEE-TT-EEEEEEEEE
T ss_pred ----EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-----CCCccHHHHHHHHHHHHcCCEEEEEEc-CC-EEEEEEEec
Confidence 389999999988 55666777888777643 248999999999999999999999998 55 999999999
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.96 E-value=9.4e-29 Score=265.53 Aligned_cols=220 Identities=17% Similarity=0.221 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHhhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh-CCCcc
Q 005974 376 RNDFRAVMNHEMRTLMH-----AIIALSSLLLETDL----TPEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLE 443 (666)
Q Consensus 376 ~~~~~~~isHelr~PL~-----~I~~~~~~l~~~~~----~~~~~~~l~~i~~~--~~~l~~li~~ll~~~~~~-~~~~~ 443 (666)
+.+|+. ++|||||||+ .|.++++++..... .++.+++++.+... +.++ ++++++.+++.. .+...
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345665 5599999999 77999997765322 34456777776655 7777 999997666543 23222
Q ss_pred cc----ccceeHHHHHHHHHHHHHHHhhc-----CCceEEEEeC--CCCCceEEecHHHHHHHHHHHHHHHhhccCCC--
Q 005974 444 LD----NGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-- 510 (666)
Q Consensus 444 l~----~~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-- 510 (666)
.. .+++++.++++++++.++..+.. +++.+.+... +..+..+.+|+.+|.+|+.||+.||+||+.++
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22 37899999999999999988876 7777776432 23344578899999999999999999999764
Q ss_pred -------cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCC------C-CCC
Q 005974 511 -------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------S-CQT 576 (666)
Q Consensus 511 -------~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~-~~~ 576 (666)
.|.+.+...++ .+.|+|+|+|+||+++.++++|++||+++.. . ...
T Consensus 275 ~~~~~~~~I~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~ 334 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE--------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPL 334 (419)
T ss_dssp TCSSCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC
T ss_pred ccCCCCCCEEEEEEeCCC--------------------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCc
Confidence 47776654332 4999999999999999999999999998764 1 123
Q ss_pred CCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 005974 577 PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 619 (666)
Q Consensus 577 ~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~ 619 (666)
.|+||||++||++++.|||+|+++|. +|.||+|+|.||....
T Consensus 335 ~G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~~ 376 (419)
T 1y8o_A 335 AGFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALSS 376 (419)
T ss_dssp --CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCGG
T ss_pred CCeecCHHHHHHHHHHhCCEEEEEec-CCCCEEEEEEecCCCC
Confidence 59999999999999999999999999 8999999999998653
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.94 E-value=6.7e-27 Score=247.20 Aligned_cols=244 Identities=16% Similarity=0.208 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHH
Q 005974 375 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 454 (666)
Q Consensus 375 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 454 (666)
++.+++.+++||+++|++.+.+..+.+.. +.+.+.++++..+++++++++. ..+.+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 46789999999999999999887654432 4588889999999999998874 2236788899
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHH---HHHHHHHHHHHHHhhcc-------------CCCcEEEEEEe
Q 005974 455 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEK---RLMQTILNIVGNAVKFT-------------KEGYVSIIASV 518 (666)
Q Consensus 455 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~---~l~~vl~nLl~NAik~~-------------~~g~v~i~~~~ 518 (666)
++.+...++..+...+..+++.++.... ..|+. ++.+++.||++||+||+ +.|.+.+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~---~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~ 146 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH 146 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCe---eecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE
Confidence 9999999998888888888877765532 23775 45555999999999997 45667777655
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh------------------------hhhhccccccCCCCC
Q 005974 519 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQSRGSSC 574 (666)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~ 574 (666)
.++ ++.|+|+|||+||+++.+ +++|+|||+++...+
T Consensus 147 ~~~--------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~ 206 (379)
T 1b3q_A 147 EGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS 206 (379)
T ss_dssp ETT--------------------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------
T ss_pred eCC--------------------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccC
Confidence 433 399999999999999977 889999999877655
Q ss_pred CCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCC------C-----CCCcCcccCC-CCCCCCCC
Q 005974 575 QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPG------S-----PIHPVALKGR-ASHGSADL 642 (666)
Q Consensus 575 ~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~------~-----~~~~~~~~~~-~~~~~~~~ 642 (666)
..+|+|+||++||++++.|||+|+++|. +|+||+|++.||+....... . |......... .+......
T Consensus 207 ~~~G~GlGL~iv~~~v~~~gG~i~v~s~-~g~Gt~f~i~lPl~~~~~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~ 285 (379)
T 1b3q_A 207 EVSGRGVGMDVVKNVVESLNGSMGIESE-KDKGTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRV 285 (379)
T ss_dssp -----CCCSHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSCEEEEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEE
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEEc-CCCCeEEEeccCCccccceEEEEEECCEEEccchheeeEEEeeCHHHeEEe
Confidence 5579999999999999999999999999 89999999999987542110 0 0000000000 01111223
Q ss_pred CCCceEEecCchhhhhhhh
Q 005974 643 TGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 643 ~~~~iLvvDD~~~~r~v~~ 661 (666)
.|..+|.+||+..+...++
T Consensus 286 ~~~~vl~vrg~~vpl~~L~ 304 (379)
T 1b3q_A 286 QDRDVIVIRGEVIPVYRLW 304 (379)
T ss_dssp TTEEEEEETTEEEEEEEHH
T ss_pred CCccEEEECCcEEeEEEHH
Confidence 5678999999988766554
No 13
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.93 E-value=5.7e-25 Score=214.83 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeH
Q 005974 374 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 451 (666)
Q Consensus 374 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 451 (666)
+++.+++..++|++++||++|...++.+... ..+++.++.++.+.+.+.++...+++++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 4467899999999999999999999888753 3344556777777777777777666665321 25678
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCC
Q 005974 452 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 531 (666)
Q Consensus 452 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~ 531 (666)
.+.++.+...++ ..++.+.++.+...+.....+...+.+++.||++||+||++++.+.+.+...++
T Consensus 95 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~---------- 160 (218)
T 3ehh_A 95 KDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK---------- 160 (218)
T ss_dssp HHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT----------
T ss_pred HHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCC----------
Confidence 888777766654 567888877765554444557888999999999999999998888888766543
Q ss_pred CCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 005974 532 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 611 (666)
Q Consensus 532 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~ 611 (666)
++.|+|+|||+||+++.. .|+|+||++|+++++.|||+|+++|. + ||+|+
T Consensus 161 ----------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~~v~~~gG~i~~~s~-~--Gt~~~ 210 (218)
T 3ehh_A 161 ----------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GTKLT 210 (218)
T ss_dssp ----------EEEEEEEESSCCCC-------------------------CHHHHHHHHHHHTTCEEEEECS-S--SEEEE
T ss_pred ----------EEEEEEEECCcCCCCCCC-----------------CCCCCCHHHHHHHHHHcCCEEEEeCC-C--CeEEE
Confidence 399999999999998754 37899999999999999999999998 5 99999
Q ss_pred EEEEec
Q 005974 612 FLVKLG 617 (666)
Q Consensus 612 i~lP~~ 617 (666)
++||+.
T Consensus 211 i~lP~~ 216 (218)
T 3ehh_A 211 MAIPNN 216 (218)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 999974
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.91 E-value=2.7e-23 Score=190.63 Aligned_cols=146 Identities=22% Similarity=0.369 Sum_probs=128.0
Q ss_pred cceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCC
Q 005974 447 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 526 (666)
Q Consensus 447 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~ 526 (666)
+++++.+++++++..++..+..+++.+.++.+++. .+.+|+..+.+++.||++||+||+++ .+.+.+...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~----- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCC-----
Confidence 47999999999999999999999999999876654 37789999999999999999999986 66666654433
Q ss_pred CCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCC
Q 005974 527 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 606 (666)
Q Consensus 527 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~ 606 (666)
++.|+|+|+|+||+++..+++|++|++.+... .|+|+||++|+++++.|||++++++. +++
T Consensus 74 ---------------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~~~~~~~gG~i~~~~~-~~~ 134 (152)
T 1id0_A 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVAREITEQYEGKIVAGES-MLG 134 (152)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHHHHHHHTTCEEEEEEC-TTS
T ss_pred ---------------EEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHHHHHHHcCCEEEEEeC-CCC
Confidence 28999999999999999999999999876543 58999999999999999999999998 889
Q ss_pred ceEEEEEEEecCC
Q 005974 607 GSTVTFLVKLGIC 619 (666)
Q Consensus 607 Gt~~~i~lP~~~~ 619 (666)
||+|++.||....
T Consensus 135 G~~~~i~lP~~~~ 147 (152)
T 1id0_A 135 GARMEVIFGRQHS 147 (152)
T ss_dssp SEEEEEEECCCC-
T ss_pred cEEEEEEEecccc
Confidence 9999999998644
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=9.2e-23 Score=186.64 Aligned_cols=146 Identities=22% Similarity=0.346 Sum_probs=117.2
Q ss_pred cccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCC
Q 005974 445 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESL 524 (666)
Q Consensus 445 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~ 524 (666)
..+++++.+++++++..+.... +++.+.++.+ .+..+.+|+..+.+++.||++||+||++++.+.+.+...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~--- 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA--- 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT---
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---
Confidence 4568999999999999988654 4566666543 34457889999999999999999999998877777665543
Q ss_pred CCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCC
Q 005974 525 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGL 604 (666)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~ 604 (666)
.+.|+|+|+|+||+++..+++|+||++.+.. ...|.|+||++|+++++.|||+|++++. +
T Consensus 77 -----------------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~~~~~~gG~i~~~~~-~ 136 (150)
T 1ysr_A 77 -----------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVAQQAQLHGGTASLENS-P 136 (150)
T ss_dssp -----------------EEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHHHHHHHTTCEEEEEEC-T
T ss_pred -----------------EEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHHHHHHHcCCEEEEeec-C
Confidence 3999999999999999999999999976433 2358999999999999999999999998 8
Q ss_pred CCceEEEEEEEec
Q 005974 605 DKGSTVTFLVKLG 617 (666)
Q Consensus 605 g~Gt~~~i~lP~~ 617 (666)
++||+|++.+|..
T Consensus 137 ~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 137 LGGARLVLRLPGP 149 (150)
T ss_dssp TSSEEEEEEEECC
T ss_pred CCCEEEEEEEeCC
Confidence 8999999999974
No 16
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.89 E-value=2.4e-22 Score=186.29 Aligned_cols=150 Identities=22% Similarity=0.327 Sum_probs=125.7
Q ss_pred cccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCC
Q 005974 443 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 522 (666)
Q Consensus 443 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~ 522 (666)
.+..+++++.+++++++..+. .++..+.+++.... ..+.+|+..+.+++.||+.||+||+ ++.+.+.+...++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~- 76 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPGS-IEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSSC-CCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETT-
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCCC-ceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCC-
Confidence 456678999999999998864 34556666654433 3477899999999999999999999 7888887766543
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 523 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
.+.+.|+|+|+||+++..+++|++|++.+... ...|+|+||++|+++++.|||+|++++.
T Consensus 77 -------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~-~~~g~GlGL~i~~~~~~~~gG~i~~~~~ 136 (161)
T 1bxd_A 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-TISGTGLGLAIVQRIVDNHNGMLELGTS 136 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-CCCCCSCCCCTTHHHHHHHTSEEEEEEE
T ss_pred -------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC-CCCCcccCHHHHHHHHHHcCCEEEEEEC
Confidence 38999999999999999999999999977543 2358999999999999999999999998
Q ss_pred CCCCceEEEEEEEecCCC
Q 005974 603 GLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 603 ~~g~Gt~~~i~lP~~~~~ 620 (666)
+++||+|++.||+....
T Consensus 137 -~~~G~~~~i~lP~~~~~ 153 (161)
T 1bxd_A 137 -ERGGLSIRAWLPVPVTR 153 (161)
T ss_dssp -TTTEEEEEEEECCCSCC
T ss_pred -CCCeEEEEEEEeCCccc
Confidence 88999999999986543
No 17
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.89 E-value=3.2e-22 Score=188.52 Aligned_cols=153 Identities=27% Similarity=0.444 Sum_probs=124.4
Q ss_pred ceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCC-CcEEEEEEeecCCCCCC
Q 005974 448 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSD 526 (666)
Q Consensus 448 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~v~i~~~~~~~~~~~~ 526 (666)
++++.++++++++.++.. ..+++.+.++++... ..+.+|+..|.+++.||+.||++|++. +.+.+.+.....+.
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~--- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD-LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE--- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC-CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTT---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC-cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCC---
Confidence 589999999999999987 788899998876543 457889999999999999999999965 66666665433221
Q ss_pred CCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCC-CCCCccchHHHHHHHHHHhCCEEEEEecCCC
Q 005974 527 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLD 605 (666)
Q Consensus 527 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g 605 (666)
++.|+|+|+|+||+++.++++|++|++.+.... ...|.|+||++|+++++.|||+|++++. ++
T Consensus 77 ---------------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~-~~ 140 (177)
T 3sl2_A 77 ---------------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSI-EG 140 (177)
T ss_dssp ---------------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEE-TT
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEec-CC
Confidence 499999999999999999999999998655432 2348999999999999999999999998 89
Q ss_pred CceEEEEEEEecCCCC
Q 005974 606 KGSTVTFLVKLGICNN 621 (666)
Q Consensus 606 ~Gt~~~i~lP~~~~~~ 621 (666)
.||+|++.||+.....
T Consensus 141 ~Gt~~~i~lP~~~~~~ 156 (177)
T 3sl2_A 141 KGTTITFTLPYKEEQE 156 (177)
T ss_dssp TEEEEEEEEEEEC---
T ss_pred CCeEEEEEEeCCCCcc
Confidence 9999999999976554
No 18
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=6e-22 Score=181.48 Aligned_cols=146 Identities=27% Similarity=0.429 Sum_probs=125.5
Q ss_pred cccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC-CCcEEEEEEeecCCC
Q 005974 445 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPES 523 (666)
Q Consensus 445 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~-~g~v~i~~~~~~~~~ 523 (666)
+.+++++.+++++++..++..+..+++.+.++.++.. ..+.+|+..+.+++.||++||+||++ ++.+.+.+...++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~-- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT-- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS-CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSS--
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC-cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCC--
Confidence 4568999999999999999999999999999887553 34778999999999999999999995 5666666654332
Q ss_pred CCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHH-HhCCEEEEEec
Q 005974 524 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSE 602 (666)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~I~v~S~ 602 (666)
.+.++|+|+|+|++++..+++|++|++++. .|+|+||++||++++ .|||++++++.
T Consensus 79 ------------------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-----~g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 79 ------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp ------------------EEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred ------------------EEEEEEEeCCCCcCHHHHHhHhhhhccCCC-----CCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 499999999999999999999999997642 478999999999999 99999999997
Q ss_pred CCCCceEEEEEEEecC
Q 005974 603 GLDKGSTVTFLVKLGI 618 (666)
Q Consensus 603 ~~g~Gt~~~i~lP~~~ 618 (666)
+ +||+|++.+|...
T Consensus 136 -~-~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 136 -E-NGVVFIFEIPKTP 149 (152)
T ss_dssp -T-TEEEEEEEEESCC
T ss_pred -C-CCEEEEEEeCCCC
Confidence 4 5999999999753
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=4.2e-22 Score=184.11 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=108.7
Q ss_pred cccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC--CCcEEEEEEeec
Q 005974 443 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAK 520 (666)
Q Consensus 443 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~--~g~v~i~~~~~~ 520 (666)
++..+++++.+++++++..++.. ..+++.+.++.+...+. +.+|+..+.+++.||++||+||+. ++.+.+.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 34567899999999999999886 67788898888776655 678999999999999999999997 566777665543
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEE
Q 005974 521 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLD 600 (666)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~ 600 (666)
... .....+..++.|+|+|+|+||+++..+++|++|++++. .|+|+||++|+++++.|||+++++
T Consensus 80 ~~~----------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~l~i~ 144 (160)
T 1r62_A 80 QLT----------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARNLIDQHSGKIEFT 144 (160)
T ss_dssp EEE----------ETTEEEEEEEEEEEEEECTTC-------------------------CHHHHHHHHHHHHTTCEEEEE
T ss_pred ccc----------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----CCCccCHHHHHHHHHHCCCeEEEE
Confidence 310 00001122589999999999999999999999998653 478999999999999999999999
Q ss_pred ecCCCCceEEEEEEEec
Q 005974 601 SEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 601 S~~~g~Gt~~~i~lP~~ 617 (666)
|. +++ |+|++.+|+.
T Consensus 145 s~-~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 145 SW-PGH-TEFSVYLPIR 159 (160)
T ss_dssp EE-TTE-EEEEEEEEEE
T ss_pred eC-CCC-EEEEEEEecc
Confidence 98 665 9999999974
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.87 E-value=2.1e-22 Score=191.90 Aligned_cols=151 Identities=20% Similarity=0.324 Sum_probs=122.9
Q ss_pred ccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhcc-------------CCCcE
Q 005974 446 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-------------KEGYV 512 (666)
Q Consensus 446 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~-------------~~g~v 512 (666)
.+++++.++++++...++..+..+++.+.++++.........+...+.+++.||++||+||+ .++.|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35899999999999999999998899888887665433222334556666999999999996 34566
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh------------------------hhhhccccc
Q 005974 513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQ 568 (666)
Q Consensus 513 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~~ 568 (666)
.+.+...++ ++.|+|+|+|+||+++.+ +++|+||++
T Consensus 82 ~I~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~ 141 (189)
T 1i58_A 82 ILSARHEGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFS 141 (189)
T ss_dssp EEEEEEETT--------------------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCS
T ss_pred EEEEEecCC--------------------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccc
Confidence 666655433 499999999999999976 899999998
Q ss_pred cCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 005974 569 SRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 617 (666)
Q Consensus 569 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~ 617 (666)
++.......|+|+||++|+++++.|||+|+++|. +++||+|++.||+.
T Consensus 142 ~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~-~~~Gt~~~i~lPl~ 189 (189)
T 1i58_A 142 TKEKVSEVSGRGVGMDVVKNVVESLNGSISIESE-KDKGTKVTIRLPLT 189 (189)
T ss_dssp HHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECC
T ss_pred ccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeC-CCCceEEEEEEeCC
Confidence 7654333358899999999999999999999998 89999999999973
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.82 E-value=1.5e-19 Score=160.49 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=101.4
Q ss_pred eeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCC
Q 005974 449 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 528 (666)
Q Consensus 449 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~ 528 (666)
+++.+.++.+...++ .+++.+.++.+.+.+.....+...+.+++.||++||+||++++.+.+.+...++
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~------- 70 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK------- 70 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT-------
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCC-------
Confidence 456666666655544 578888877665444444557889999999999999999988888888765543
Q ss_pred CCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCce
Q 005974 529 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 608 (666)
Q Consensus 529 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt 608 (666)
++.++|+|||+||+++.. .|+|+||++||++++.|||+++++|. + ||
T Consensus 71 -------------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~~~~~~gG~i~~~s~-~--Gt 117 (128)
T 3ehg_A 71 -------------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GT 117 (128)
T ss_dssp -------------EEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHHHHHHHTTCEEEEECS-S--SE
T ss_pred -------------EEEEEEEECCcCcCcccC-----------------CCCCccHHHHHHHHHHcCCEEEEEeC-C--CE
Confidence 399999999999998754 37899999999999999999999998 5 99
Q ss_pred EEEEEEEec
Q 005974 609 TVTFLVKLG 617 (666)
Q Consensus 609 ~~~i~lP~~ 617 (666)
+|+++||+.
T Consensus 118 ~~~i~lP~~ 126 (128)
T 3ehg_A 118 KLTMAIPNN 126 (128)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEecC
Confidence 999999975
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1.9e-18 Score=153.42 Aligned_cols=125 Identities=19% Similarity=0.244 Sum_probs=104.0
Q ss_pred cceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCC
Q 005974 447 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 526 (666)
Q Consensus 447 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~ 526 (666)
+.+++.+.++++...+ ..+++.+.++++...+.....|+..+.+++.||++||+||++++.+.+.+...+
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~------ 72 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDD------ 72 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESS------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcC------
Confidence 4688999999888877 467788888777665544444688999999999999999998888777765431
Q ss_pred CCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCC-
Q 005974 527 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLD- 605 (666)
Q Consensus 527 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g- 605 (666)
. +.++|+|+|+||+++. +|+||++||++++.|||++++++. ++
T Consensus 73 --------------~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~~~~~~~~gG~i~~~~~-~~~ 116 (129)
T 3zxo_A 73 --------------D-LCIEVTDNGRGMPDEF--------------------TGSGLTNLRQRAEQAGGEFTLASM-PGA 116 (129)
T ss_dssp --------------E-EEEEEEECCCCCTTTT--------------------CSHHHHHHHHHHHHTTCEEEEEEC-TTT
T ss_pred --------------C-EEEEEecCCCCCCccc--------------------CCcCHHHHHHHHHHcCCEEEEeeC-CCC
Confidence 2 7899999999998764 499999999999999999999998 77
Q ss_pred CceEEEEEEEec
Q 005974 606 KGSTVTFLVKLG 617 (666)
Q Consensus 606 ~Gt~~~i~lP~~ 617 (666)
+|++|++.+|+.
T Consensus 117 ~G~~~~i~lP~~ 128 (129)
T 3zxo_A 117 SGTVLRWSAPLS 128 (129)
T ss_dssp CCEEEEEEEESC
T ss_pred CcEEEEEEecCC
Confidence 899999999974
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.3e-17 Score=146.83 Aligned_cols=122 Identities=22% Similarity=0.250 Sum_probs=99.4
Q ss_pred eHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCC
Q 005974 450 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 529 (666)
Q Consensus 450 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~ 529 (666)
++.+.++++...+ ...++.+.++++.+.+.....+...+.+++.|+++||+||++++.+.+.+...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~--------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVED--------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEE---------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCC---------
Confidence 4566676666666 457777777776655544444588899999999999999999888777765432
Q ss_pred CCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceE
Q 005974 530 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGST 609 (666)
Q Consensus 530 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~ 609 (666)
. +.++|+|||+||+++. .|+||++++++++.|||++++++. +++||+
T Consensus 69 -----------~-~~i~v~D~G~gi~~~~--------------------~GlGL~~~~~~~~~~gG~i~~~~~-~~~G~~ 115 (124)
T 3zxq_A 69 -----------D-VRVEVVDDGVGISGDI--------------------TESGLRNLRQRADDAGGEFTVENM-PTGGTL 115 (124)
T ss_dssp -----------E-EEEEEEECCCSSCGGG--------------------SHHHHHHHHHHHHHHTCEEEEEEC-TTSSEE
T ss_pred -----------C-EEEEEEECCCCCCccc--------------------cccCHHHHHHHHHHhCCEEEEEEc-CCCcEE
Confidence 2 7899999999999764 399999999999999999999998 888999
Q ss_pred EEEEEEec
Q 005974 610 VTFLVKLG 617 (666)
Q Consensus 610 ~~i~lP~~ 617 (666)
|++++|+.
T Consensus 116 ~~i~lP~~ 123 (124)
T 3zxq_A 116 LRWSAPLR 123 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999975
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.65 E-value=5.7e-16 Score=140.39 Aligned_cols=104 Identities=24% Similarity=0.382 Sum_probs=82.8
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhh
Q 005974 487 GDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 562 (666)
Q Consensus 487 ~d~~~l~~vl~nLl~NAik~~~~----g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 562 (666)
.|...+.+++.||++||+||+.. +.+.+.+...++ .+.|+|+|+|+||+ ..+++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~--------------------~~~i~V~D~G~g~~--~~~~~ 92 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIP--DIEEA 92 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCS--CHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC--------------------EEEEEEEECCCCcC--hHHHh
Confidence 37889999999999999999965 667776655433 39999999999999 89999
Q ss_pred hccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974 563 FTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 620 (666)
Q Consensus 563 f~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~ 620 (666)
|++|++++.. ..|.|+||++|+++++ +++++|. +++||+|++.+|....+
T Consensus 93 ~~~~~~~~~~---~~~~GlGL~iv~~~~~----~i~~~~~-~~~Gt~v~~~lp~~~~~ 142 (145)
T 1th8_A 93 RQPLFTTKPE---LERSGMGFTIMENFMD----EVIVESE-VNKGTTVYLKKHGIHHH 142 (145)
T ss_dssp TCCC----------CCCSCHHHHHHHHSS----EEEEEEE-TTTEEEEEEEECCC---
T ss_pred hcccccCCCC---CCCCcchHHHHHHHHh----eEEEEeC-CCCCEEEEEEEeccccc
Confidence 9999987652 2578999999999988 8999998 89999999999986544
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.57 E-value=6.7e-15 Score=157.52 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=95.1
Q ss_pred EEecHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh
Q 005974 485 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 560 (666)
Q Consensus 485 v~~d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 560 (666)
..+|+..|.|++.||++||++|+..+ .|.+.+...+.. ..++.|+|+|||+||++++++
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~ 88 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVP 88 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCc-----------------CcEEEEEEEECCCCCCHHHHH
Confidence 44578999999999999999999765 466666544311 114899999999999999999
Q ss_pred hhhccccccCCCCC--CCCCccchHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCC
Q 005974 561 LLFTKFAQSRGSSC--QTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGIC 619 (666)
Q Consensus 561 ~if~~f~~~~~~~~--~~~g~GlGL~i~k~iv~~~gG~-I~v~S~~~g~Gt-~~~i~lP~~~~ 619 (666)
++|++|++++.... ...|+|+||++|+.+++.|||+ ++++|. .+.|+ .|+|.+|++..
T Consensus 89 ~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~-~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp HHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEECTT
T ss_pred HHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEe-cCCCceEEEEEEecccc
Confidence 99999976654322 2348999999999999999999 999998 78887 99999998754
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.56 E-value=6.1e-15 Score=159.51 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
|+..|.|++.||++||++|+..| .|.+.+...+.. ..++.|+|+|||+||+++.++++|
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCc-----------------CceEEEEEEECCCCCCHHHHHHHh
Confidence 45999999999999999999875 467766554311 014899999999999999999999
Q ss_pred ccccccCCCC--CCCCCccchHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCC
Q 005974 564 TKFAQSRGSS--CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGIC 619 (666)
Q Consensus 564 ~~f~~~~~~~--~~~~g~GlGL~i~k~iv~~~gG~-I~v~S~~~g~Gt-~~~i~lP~~~~ 619 (666)
++|++++... ....|+|+||++|+.+++.|||+ ++++|. ++.|+ .|+|.+|++..
T Consensus 91 ~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~-~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 91 GRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp TSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEEETT
T ss_pred ccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe-cCCCeEEEEEEEEeccc
Confidence 9997765432 22358999999999999999999 999998 77776 89999998754
No 27
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.45 E-value=1e-12 Score=123.87 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=132.5
Q ss_pred HHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCc
Q 005974 158 ADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGS 237 (666)
Q Consensus 158 a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 237 (666)
..++++..+++++++++.+.++++++.+++++|++++++.+++.+.+.+++++|+||+.+++ ......+.+........
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~~~~ 90 (184)
T 3p01_A 12 YDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGTVNN 90 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCccCc
Confidence 55677777888889999999999999999999999999999999999999999999999543 33333332333222222
Q ss_pred ccccCChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCC
Q 005974 238 SVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 317 (666)
Q Consensus 238 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~ 317 (666)
.++ ..+.+..++.+++++.+++....+.+.........+.++.+.+||. .++..+|++.+.+..+
T Consensus 91 ~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~--------------~~~~~~GvL~l~~~~~ 155 (184)
T 3p01_A 91 WLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPIT--------------YRNEMLGVLSLQWQQP 155 (184)
T ss_dssp CGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEE--------------ETTEEEEEEEEEESSC
T ss_pred ccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEE--------------ECCEEEEEEEeCcCCC
Confidence 244 4788899999999999998777765542111122356788899964 3456799999988889
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHH
Q 005974 318 RKWRDHELELIDVVADQVAVALSHAA 343 (666)
Q Consensus 318 ~~~~~~e~~ll~~va~~~a~al~~a~ 343 (666)
+.|+++|+++++.+|+++++||++++
T Consensus 156 ~~f~~~d~~ll~~lA~q~aiAi~nAr 181 (184)
T 3p01_A 156 ISLREDELTLIHLSAQLVAIALTSSR 181 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998885
No 28
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.36 E-value=2.1e-12 Score=141.54 Aligned_cols=115 Identities=18% Similarity=0.328 Sum_probs=86.8
Q ss_pred EEecHHHHHHHHHHHHHHHhhccCC-C---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChh
Q 005974 485 AVGDEKRLMQTILNIVGNAVKFTKE-G---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 560 (666)
Q Consensus 485 v~~d~~~l~~vl~nLl~NAik~~~~-g---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 560 (666)
+.+|+..|.+++.||++||++|+.. | .|.+.+...+.+ ++.|+|+|||+||+++.++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~-------------------~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD-------------------YVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT-------------------EEEEEEECCSCCCCGGGHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc-------------------EEEEEEEECCCCCCHHHHH
Confidence 4579999999999999999999974 4 455555443312 4899999999999999999
Q ss_pred hhhccccccCCCC---CCCCCccchHHHHHHHHHHhCCE-EEEEecCCCCc-eEEEEEEEecCC
Q 005974 561 LLFTKFAQSRGSS---CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKG-STVTFLVKLGIC 619 (666)
Q Consensus 561 ~if~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~gG~-I~v~S~~~g~G-t~~~i~lP~~~~ 619 (666)
++|++|+++.+.. ....|.|+||++|+.+++.|||+ |+++|. .++| +.+++.+|++..
T Consensus 92 ~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~-~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 92 KVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSK-TSPTAPAHYYELMINTS 154 (621)
T ss_dssp HHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEE-CSSSSCEEEEECCCCSS
T ss_pred HHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEee-ccCCccceEEEEecchh
Confidence 9998876543211 12258999999999999999999 899997 5532 455555555443
No 29
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.35 E-value=3.7e-12 Score=119.01 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=129.1
Q ss_pred hhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChh
Q 005974 166 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI 245 (666)
Q Consensus 166 ~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (666)
+.++++++.+..++++++.+.+..+.+++++.+++.+.+.++++.|+||+.++++..+...+++.........++.+.+.
T Consensus 5 ~~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (181)
T 3e0y_A 5 QRANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGI 84 (181)
T ss_dssp ------CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCe
Confidence 44556677788899999999999999999999999999999999999999998777554445544444444567778888
Q ss_pred HHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhh
Q 005974 246 VTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHEL 325 (666)
Q Consensus 246 ~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~ 325 (666)
+..++.+++++.+++......+.........+..+.+.+|+.. ++..+|++.+.+..++.|+++++
T Consensus 85 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~ 150 (181)
T 3e0y_A 85 TGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGD--------------KKEVYGVINLNTTSIRSFHEDEI 150 (181)
T ss_dssp HHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEEC--------------SSCEEEEEEEEESSCCCCCHHHH
T ss_pred eeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEe--------------CCeEEEEEEEeeCCCCCCCHHHH
Confidence 9999999999999887766554332222334567888888643 35579999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 326 ELIDVVADQVAVALSHAAILEDSM 349 (666)
Q Consensus 326 ~ll~~va~~~a~al~~a~l~~~~~ 349 (666)
++++.+|+++++++.+++++++.+
T Consensus 151 ~~l~~la~~~a~al~~~~~~~~~~ 174 (181)
T 3e0y_A 151 YFVSIIANLILTAIKLRQQVASSR 174 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888776543
No 30
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.34 E-value=2e-11 Score=112.83 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=132.9
Q ss_pred hHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc--cccCcccccCChhHHHH
Q 005974 172 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTDV 249 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v 249 (666)
.+.++.++++++.+.+..|.+++++.+++.+.+.++++.|+||+.++++..+......+.. ......++.+.+.+..+
T Consensus 4 l~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3trc_A 4 MNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHH
Confidence 3457789999999999999999999999999999999999999999888766665554432 22333667788899999
Q ss_pred hcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHH
Q 005974 250 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 329 (666)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 329 (666)
+.+++++.+++......+.........+..+.+.+|+. .++..+|++.+.+..++.|+++++++++
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 84 GEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPII--------------EQGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp HHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEE--------------ETTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred HhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEE--------------ECCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 99999999998777665543333334667888888864 3456799999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005974 330 VVADQVAVALSHAAILEDSM 349 (666)
Q Consensus 330 ~va~~~a~al~~a~l~~~~~ 349 (666)
.+|+++++++++++++++.+
T Consensus 150 ~la~~~a~ai~~a~l~~~l~ 169 (171)
T 3trc_A 150 TLAIHLAAEIAHARAKGALE 169 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 31
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.30 E-value=1.5e-11 Score=116.01 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=129.6
Q ss_pred hhhchhHHhHHHHHHHHHHhcc-cchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEE-eecc--------ccccC
Q 005974 167 LILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIG 236 (666)
Q Consensus 167 ~~~~~~~~~~~l~~lt~~i~~~-ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~--------~~~~~ 236 (666)
.++++.++.+.+.++++.+.++ +|.+++++.++..+.+.++++.|+|+++++++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 4566777888899999999877 599999999999999999999999999998776655432 1111 12334
Q ss_pred cccccCChhHHHHhcccCceEccCCCcchhhhcc-ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC
Q 005974 237 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 315 (666)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 315 (666)
..+|.+.+.+..++.+++++.+++......+... ......+..+.+++||. .++..+||+.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIV--------------SRGSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEE--------------ETTEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEec--------------cCCeEEEEEEEEeC
Confidence 4667788899999999999999987776554321 11123455677888864 45567999998877
Q ss_pred CCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 316 GGR-KWRDHELELIDVVADQVAVALSHAAILEDSMRA 351 (666)
Q Consensus 316 ~~~-~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~ 351 (666)
.++ .|+++++++++.+|++++++|++++++++.++.
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 999999999999999999999999998776543
No 32
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.28 E-value=4.2e-11 Score=111.57 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=125.5
Q ss_pred hHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEE-Eeeccc---cccCcccccCChhHH
Q 005974 172 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQ---IQIGSSVPINLPIVT 247 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 247 (666)
+..++.++++++.+.+++|++++++.+++.+.+.+++++|+|++.++++..+... ..+... ......+|...+.+.
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 4567889999999999999999999999999999999999999999887766543 111111 122335567778889
Q ss_pred HHhcccCceEccCCCcchhhhcc-----ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccch
Q 005974 248 DVFNSAQAMRLPYNCPLARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRD 322 (666)
Q Consensus 248 ~v~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 322 (666)
.++.++++..++.......+... ......+.++.+.+||. .++..+|++.+.+..++.|++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~--------------~~~~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLR--------------SGGRVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEE--------------ETTEEEEEEEEEESSCCCCCH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEE--------------ECCEEEEEEEEEECCCCCCCH
Confidence 99999999988433323322211 01123356778888853 345679999999988889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 323 HELELIDVVADQVAVALSHAAILEDSM 349 (666)
Q Consensus 323 ~e~~ll~~va~~~a~al~~a~l~~~~~ 349 (666)
+++++++.+|+++++||+|++++++.+
T Consensus 148 ~d~~ll~~lA~~~a~Ai~na~l~~~l~ 174 (177)
T 3k2n_A 148 GDKSLLSGVSSSIAIAVSNALAYEELR 174 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987754
No 33
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.26 E-value=3.6e-11 Score=111.62 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=103.8
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCCh----hHHHHhcccCce
Q 005974 181 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLP----IVTDVFNSAQAM 256 (666)
Q Consensus 181 lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~ 256 (666)
.+.+|++++|++++++++++++++.+++|+|.||..++++..........++.....+....++ .....+..+++.
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 4677999999999999999999999999999999999887655554444433322223333322 235678889999
Q ss_pred EccCCCcchhhh-ccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeC-CCCCccchhhhHHHHHHHHH
Q 005974 257 RLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVADQ 334 (666)
Q Consensus 257 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~va~~ 334 (666)
.+++........ ........+-++.+.+|+.. ++...|++.+.. ..+|.|++.|++++..+|++
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vPi~~--------------~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVPMVI--------------DDQLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEEEEE--------------TTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEEEEE--------------CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 988865431111 01112335667788888643 334577777765 78999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005974 335 VAVALSHAAILEDS 348 (666)
Q Consensus 335 ~a~al~~a~l~~~~ 348 (666)
+++||.+++++++.
T Consensus 148 l~iAi~qa~l~~~~ 161 (171)
T 4glq_A 148 GSLVLERLHFLEQT 161 (171)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 34
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.25 E-value=5.3e-11 Score=111.97 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=123.3
Q ss_pred hHHhHHHHHHHHHH-hcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc---------cccCccccc
Q 005974 172 EETGRHVRMLTHEI-RSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPI 241 (666)
Q Consensus 172 ~~~~~~l~~lt~~i-~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 241 (666)
.+..+.|.++++.+ .+.+|.+++++.+++.+.+.+++++|+||+.|+++..+......... ......+|.
T Consensus 9 ~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2zmf_A 9 TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEET
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCC
Confidence 33445677888875 67789999999999999999999999999999988876654332211 112234567
Q ss_pred CChhHHHHhcccCceEccCCCcchhhhcc-ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEe-eCCCCCc
Q 005974 242 NLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRK 319 (666)
Q Consensus 242 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~-~~~~~~~ 319 (666)
+.+....++.+++++.+++......+... ......+.++.+.+|+.. ++..+|++.+ +...++.
T Consensus 89 ~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 89 EKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVS--------------RGSVIGVVQMVNKISGSA 154 (189)
T ss_dssp TSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEE--------------TTEEEEEEEEEEETTSSS
T ss_pred CccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecc--------------cCceeeEEEEEEcCCCCC
Confidence 78889999999999999987766543321 122334556778888643 3456787765 4566789
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 320 WRDHELELIDVVADQVAVALSHAAILEDSM 349 (666)
Q Consensus 320 ~~~~e~~ll~~va~~~a~al~~a~l~~~~~ 349 (666)
|+++|+++++.+|.++++||+|++++++.+
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr 184 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIR 184 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654
No 35
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.21 E-value=2.2e-10 Score=105.23 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=127.6
Q ss_pred chhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc--cccCcccccCChhHH
Q 005974 170 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVT 247 (666)
Q Consensus 170 ~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 247 (666)
.+++.++.+.++++.+.+..+.+++++.+++.+.+.++++.|+||+.++++..+......+.. ......++...+.+.
T Consensus 4 ~~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3ci6_A 4 MSNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVG 83 (171)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeeh
Confidence 446677889999999999999999999999999999999999999999887766665554432 223345677788899
Q ss_pred HHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHH
Q 005974 248 DVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELEL 327 (666)
Q Consensus 248 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~l 327 (666)
.++.+++++.+++......+.........+..+.+.+|+. .++..+|++.+....++.|+++++++
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~f~~~~~~~ 149 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVM--------------YRRKVMGVLVVQNKQPQDFSEAAESF 149 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEE--------------ETTEEEEEEEEEESSCCCCCHHHHHH
T ss_pred hhhccCceEEecCCCcCcchhccccccccccceEEEEeEE--------------ECCEEEEEEEEecCCCCCCCHHHHHH
Confidence 9999999999987766554432222233445777888853 34567999999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005974 328 IDVVADQVAVALSHAAILED 347 (666)
Q Consensus 328 l~~va~~~a~al~~a~l~~~ 347 (666)
++.+|++++.++.+++++++
T Consensus 150 l~~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 150 LVTLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 36
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.17 E-value=1.1e-10 Score=107.64 Aligned_cols=155 Identities=14% Similarity=0.229 Sum_probs=106.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc---cccCcccccCChhHHHHhcccCceEccCCCcc
Q 005974 188 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPL 264 (666)
Q Consensus 188 ~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~ 264 (666)
.+++++++..++..+.+.++++.+++++++++.. .+....... ...+..+|...+.+..++.++++++.+.....
T Consensus 3 ~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L--~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~~ 80 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVHFDRISFLLLANETL--KLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDTQ 80 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEE--EEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCTT
T ss_pred CCCHHHHHHHHHHHHHHhcCcceEEEEEEECCEE--EEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCcccc
Confidence 4688999999999999999999999999986543 333332221 12345677777899999999999987544433
Q ss_pred hhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 005974 265 ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAI 344 (666)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l 344 (666)
..+.........+.++.+++||.. ++..+|++.+.+..++.|+++++++++.+|+++|++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~S~l~vPL~~--------------~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~l 146 (165)
T 3o5y_A 81 DNFYEKQYLAILDLKSILVIPIYS--------------KNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVEL 146 (165)
T ss_dssp CCCTTHHHHHTTTCCEEEEEEEEC--------------SSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccchHHHhhCCCEEEEeCeeE--------------CCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232211222345678899999643 455699999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005974 345 LEDSMRARNQLMEQ 358 (666)
Q Consensus 345 ~~~~~~~~~~L~~~ 358 (666)
|++.++.++++++.
T Consensus 147 y~~~~~~~~~~~~~ 160 (165)
T 3o5y_A 147 YGQVLRSKQEWEDT 160 (165)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99987777665543
No 37
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.14 E-value=9.6e-10 Score=101.16 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccc--ccCccccc--CChhHHHHhc
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 251 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~ 251 (666)
..++++++.+.+..|.+++++.+++.+.+.+++++|+|++.++++..+......+... .....++. ..+.+..++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4578899999999999999999999999999999999999998887777766555332 23345555 5778899999
Q ss_pred ccCceEccCCCcchhhhcc----ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCC-CccchhhhH
Q 005974 252 SAQAMRLPYNCPLARIRLL----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 326 (666)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ 326 (666)
+++++.+++.......... ......+..+.+.+||. .++..+|++.+.+..+ +.|++++++
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIV--------------VKGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEE--------------ETTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEE--------------eCCcEEEEEEEEccccCCCCCHHHHH
Confidence 9999999887765543211 11223456777888853 4456799999988665 459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005974 327 LIDVVADQVAVALSHAAILED 347 (666)
Q Consensus 327 ll~~va~~~a~al~~a~l~~~ 347 (666)
+++.+|+++++++.+++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999988763
No 38
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.09 E-value=2.8e-10 Score=109.29 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=92.1
Q ss_pred hhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecc---ccccCcccccC
Q 005974 166 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPIN 242 (666)
Q Consensus 166 ~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 242 (666)
..++++.++.+.++++++.|++++|++++++++++.+.+.+++++|+|+++++++........... +...+..+|..
T Consensus 6 ~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (208)
T 2lb5_A 6 WAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAG 85 (208)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGG
T ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChh
Confidence 445667777889999999999999999999999999999999999999999987655444433322 11122222221
Q ss_pred C--hhHHHH------------------------hcccCceEccCCCcchhhhc-cccccCCCCceEEeecccccCCcccc
Q 005974 243 L--PIVTDV------------------------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQIN 295 (666)
Q Consensus 243 ~--~~~~~v------------------------~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~ 295 (666)
+ ...... ..+++++.+++......... .......+.++.+.+|+.
T Consensus 86 ~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~-------- 157 (208)
T 2lb5_A 86 DIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLM-------- 157 (208)
T ss_dssp GCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEE--------
T ss_pred hCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEE--------
Confidence 1 111222 33334444443322211100 001113456777888864
Q ss_pred CCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005974 296 DWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 347 (666)
Q Consensus 296 ~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~ 347 (666)
.++..+|++.+.+..++.|+++|+++++.+|++++++|.++++++.
T Consensus 158 ------~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 158 ------HHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp ------ETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------ECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455689999888889999999999999999999999999887753
No 39
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.01 E-value=3.7e-09 Score=112.30 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=130.2
Q ss_pred hchhHHhHHHHHHHHHHhc-ccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHH
Q 005974 169 LTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVT 247 (666)
Q Consensus 169 ~~~~~~~~~l~~lt~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (666)
+++.+..+.+.++++.+.. ..+.++++..++..+.+.+++++|+||+.++++..+...............+|.+.+.+.
T Consensus 192 ~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (398)
T 1ykd_A 192 TQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFAG 271 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchhh
Confidence 3445567778899999999 999999999999999999999999999999887776665543322223345677888999
Q ss_pred HHhcccCceEcc-CCCcchhhhcc---ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCC-------
Q 005974 248 DVFNSAQAMRLP-YNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG------- 316 (666)
Q Consensus 248 ~v~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~------- 316 (666)
.++.+++++.++ +......+... ......+.++.+++||.. .++..+|++.+.+..
T Consensus 272 ~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~~~~iGvl~l~~~~~~~~~~~ 338 (398)
T 1ykd_A 272 IVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFN-------------GDQELIGVTQLVNKKKTGEFPP 338 (398)
T ss_dssp HHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEEC-------------SSSCEEEEEEEEEECCSSCCCC
T ss_pred HHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeec-------------CCCCEEEEEEEEecCCcccccc
Confidence 999999999998 77665544322 011123467788889642 244568888887765
Q ss_pred -------------CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 317 -------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 351 (666)
Q Consensus 317 -------------~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~ 351 (666)
++.|+++++++++.+|.+++++|.+++++++.++.
T Consensus 339 ~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~ 386 (398)
T 1ykd_A 339 YNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQ 386 (398)
T ss_dssp CCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999876543
No 40
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.99 E-value=4e-09 Score=95.37 Aligned_cols=134 Identities=21% Similarity=0.197 Sum_probs=106.4
Q ss_pred chhHHHHHHHHHHHhhcCCCeEEEEccCCCC----CeEEEEEeec--cccccCcccccCChhHHHHhcccCceEccCCCc
Q 005974 190 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELSYTLN--NQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 263 (666)
Q Consensus 190 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~ 263 (666)
|++++++.+++.+.+.++++.|+|+++++++ ..+.+....+ .....+..+|.+.+.+..++.+++++.+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 4678899999999999999999999998764 4455433333 333455677888899999999999999998765
Q ss_pred chhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-CCCccchhhhHHHHHHHHHHHHHHHHH
Q 005974 264 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 342 (666)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~va~~~a~al~~a 342 (666)
.+ +.++.+++||. .++..+|++.+.+. .++.|++++++++..+|.++++++.++
T Consensus 81 d~-----------~~~s~l~vPL~--------------~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLPLR--------------ATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEEEE--------------ETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEEEc--------------cCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 46788899964 34557999999887 788999999999999999999999999
Q ss_pred HHHHHH
Q 005974 343 AILEDS 348 (666)
Q Consensus 343 ~l~~~~ 348 (666)
+.+++.
T Consensus 136 ~~~~~~ 141 (149)
T 2vjw_A 136 SSQRRM 141 (149)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877553
No 41
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=98.97 E-value=3e-09 Score=99.30 Aligned_cols=159 Identities=14% Similarity=0.029 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEE--Eeecccc-ccCcccccCChhHHHHhcc
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS--YTLNNQI-QIGSSVPINLPIVTDVFNS 252 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~v~~~ 252 (666)
..++++++.+.++.|.+++++.+++.+.+.++++.|+|+++++++ .+.+. .+..... ......+...+.+..++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKG-VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTS-CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCC-CEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 357888899999999999999999999999999999999995444 33333 2222211 1122333356788999999
Q ss_pred cCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccc-eEEEEEeeC-CCCCccchhhhHHHHH
Q 005974 253 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSY-AVMVLMLPT-DGGRKWRDHELELIDV 330 (666)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~-~~~vl~~~~-~~~~~~~~~e~~ll~~ 330 (666)
++++.+++................+..+.+.+||.. ++. .+|++.+.+ ..++.|+++++++++.
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~--------------~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISR--------------KGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECC--------------TTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEEEEe--------------CCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999876654432111111123466778888643 333 689999988 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005974 331 VADQVAVALSHAAILEDSM 349 (666)
Q Consensus 331 va~~~a~al~~a~l~~~~~ 349 (666)
+|.+++++|.+++.+++..
T Consensus 148 la~~~a~al~~a~~~~~~~ 166 (181)
T 2qyb_A 148 LAGQLAQAVKIVTEMEAKE 166 (181)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999986655443
No 42
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.94 E-value=2e-08 Score=105.36 Aligned_cols=168 Identities=10% Similarity=0.092 Sum_probs=125.3
Q ss_pred chhHHhHHHHHHHHHHhcc-cchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEE-eeccccccCcccccCChhHH
Q 005974 170 TQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNNQIQIGSSVPINLPIVT 247 (666)
Q Consensus 170 ~~~~~~~~l~~lt~~i~~~-ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 247 (666)
++.++.+.+.++++.+.+. .+.+++++.++..+.+.+++++|+|++.+++........ ...........+|.+.+.+.
T Consensus 175 ~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 254 (368)
T 1mc0_A 175 KLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAG 254 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEETTEECCCSTTCCEECTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCCceEEEEeccccccccccceeecCCCceee
Confidence 3455667889999999998 699999999999999999999999999998322222222 11122333456677888999
Q ss_pred HHhcccCceEccCCCcchhhhccccc-cCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCC-ccchhhh
Q 005974 248 DVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHEL 325 (666)
Q Consensus 248 ~v~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~ 325 (666)
.++.+++++.+++......+...... ...+.++.+.+||... ++..+|++.+.+..++ .|+++++
T Consensus 255 ~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~~~~iGvl~l~~~~~~~~f~~~d~ 321 (368)
T 1mc0_A 255 HVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFSKFDE 321 (368)
T ss_dssp HHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECT-------------TSCEEEEEEEEEETTSSSCCHHHH
T ss_pred eehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECC-------------CCcEEEEEEEEECCCCCCCCHHHH
Confidence 99999999999988776554321110 1122467888886432 2556899998877664 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 326 ELIDVVADQVAVALSHAAILEDSMR 350 (666)
Q Consensus 326 ~ll~~va~~~a~al~~a~l~~~~~~ 350 (666)
++++.+|.+++++|++++++++.++
T Consensus 322 ~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 322 DLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 43
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=98.94 E-value=2.5e-09 Score=100.22 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=118.7
Q ss_pred HHhHHHHHHHHHHhccc-chhHHHHHHHHHHHhhcCCCeEEEEccCCCCC--eEEEE-Ee--ecc-------ccccCccc
Q 005974 173 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELS-YT--LNN-------QIQIGSSV 239 (666)
Q Consensus 173 ~~~~~l~~lt~~i~~~l-d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~-~~--~~~-------~~~~~~~~ 239 (666)
+.++.++++++.|.+.+ |.+++++.+++.+.+.+++++|+|+++++++. .+... .. .+. .......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 45678999999999999 99999999999999999999999999987654 33221 11 111 11223467
Q ss_pred ccCChhHHHHhcccCceEccCCCcchhhhcccc-ccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCC-
Q 005974 240 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG- 317 (666)
Q Consensus 240 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~- 317 (666)
|.+.+.++.++.+++++.+++.....++..... ......++.+++||.. ++..+||+.+.+..+
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~--------------~~~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQ--------------GKEVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEE--------------TTEEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEecc--------------CCEEEEEEEEEeCCCC
Confidence 788899999999999999999888776643211 1234568899999643 355799999877665
Q ss_pred CccchhhhHHHHHHHHHHHHHH
Q 005974 318 RKWRDHELELIDVVADQVAVAL 339 (666)
Q Consensus 318 ~~~~~~e~~ll~~va~~~a~al 339 (666)
..|+++++++++.+|++++++|
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998
No 44
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.94 E-value=1.1e-08 Score=116.75 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=126.9
Q ss_pred hHHhHHHHHHHHHHhc-ccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecc---ccccCcccccCChhHH
Q 005974 172 EETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINLPIVT 247 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 247 (666)
.++++.+.++++.+.+ ..+.+++++.+++.+.+.+++++|+|++.++ ..+......+. .......+|.+.+..+
T Consensus 177 ~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~--~~l~~~~~~g~~~~~~~~~~~~~~~~gi~g 254 (691)
T 3ibj_A 177 KCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ--NELVAKVFDGGVVDDESYEIRIPADQGIAG 254 (691)
T ss_dssp HHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECS--SEEEEECCSSSCCSSCCCEEEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeC--CeEEEEeecCCcccccccceeccCCCCHHH
Confidence 4566788999999998 7899999999999999999999999999997 33333222211 1223346677889999
Q ss_pred HHhcccCceEccCCCcchhhhccc-cccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCC-ccchhhh
Q 005974 248 DVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHEL 325 (666)
Q Consensus 248 ~v~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~ 325 (666)
.++.+++++.+++.....++.... .....+.++.+++||... ++..+||+.+.+..++ .|+++|+
T Consensus 255 ~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~-------------~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 255 HVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp HHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCS-------------SSCCCEEEEEEEESSSSSCCTTTT
T ss_pred HHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECC-------------CCCEEEEEEEEECCCCCCCCHHHH
Confidence 999999999999988876653211 111234568888896432 1356888888766554 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 326 ELIDVVADQVAVALSHAAILEDSMRARNQL 355 (666)
Q Consensus 326 ~ll~~va~~~a~al~~a~l~~~~~~~~~~L 355 (666)
++++.+|.++++||++++++++.++..++.
T Consensus 322 ~ll~~lA~~~aiAIena~l~~~l~~~~~~~ 351 (691)
T 3ibj_A 322 DLATAFSIYCGISIAHSLLYKKVNEAQYRS 351 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877655443
No 45
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.93 E-value=1.7e-08 Score=105.86 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=123.1
Q ss_pred HhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhccc
Q 005974 174 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 253 (666)
Q Consensus 174 ~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 253 (666)
..+.+.++++.+ +.+|.+++++.+++.+.+.+++++|+||+.++++..+......+........+|.+.+.+..++.++
T Consensus 12 ~~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~ 90 (368)
T 1mc0_A 12 HDRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDK 90 (368)
T ss_dssp HHHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHC
T ss_pred chHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhcC
Confidence 345678888889 8899999999999999999999999999999887766555443322222345677788899999999
Q ss_pred CceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-CCCccchhhhHHHHHHH
Q 005974 254 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVA 332 (666)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~va 332 (666)
+++.+++......... ......+.++.+.+|+... .++..+|++.+... .++.|++.+.+++..++
T Consensus 91 ~~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl~~~------------~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la 157 (368)
T 1mc0_A 91 QCIQLKDLTSDDVQQL-QNMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLGGDFFTDEDEHVIQHCF 157 (368)
T ss_dssp CCEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEEECT------------TTCSEEEEEEEEEESSCSSCCSHHHHHHHHHH
T ss_pred CeEEeccccccccccc-ccccCcccceEEEEEeecC------------CCCcEEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 9999998876654111 1122334677888886432 01456888886554 45579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005974 333 DQVAVALSHAAILEDSMR 350 (666)
Q Consensus 333 ~~~a~al~~a~l~~~~~~ 350 (666)
.++++++.+++++++.++
T Consensus 158 ~~~~~al~~~~l~~~~~~ 175 (368)
T 1mc0_A 158 HYTGTVLTSTLAFQKEQK 175 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988876554
No 46
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.90 E-value=7.6e-09 Score=93.22 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=109.4
Q ss_pred cccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc--cccC-cccccCChhHHHHhcccCceEccCCCc
Q 005974 187 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 263 (666)
Q Consensus 187 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~~~ 263 (666)
+++|.+++++.+++.+.+.++++.|+|++.+++ ..+......+.. .... ..++...+.+..++.+++++.+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 456889999999999999999999999999954 344443333322 1111 255667888999999999999998766
Q ss_pred chhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCC-CccchhhhHHHHHHHHHHHHHHHHH
Q 005974 264 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 342 (666)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~va~~~a~al~~a 342 (666)
...+..... ...+..+.+.+|+. .++..+|++.+.+..+ +.|+++++++++.+|.+++++++++
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVPVR--------------VRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEEEE--------------ETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEeeEE--------------ECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 554432222 33456777888864 4556789999888776 7999999999999999999999999
Q ss_pred HHHHHH
Q 005974 343 AILEDS 348 (666)
Q Consensus 343 ~l~~~~ 348 (666)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 888653
No 47
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.89 E-value=5.4e-08 Score=89.20 Aligned_cols=149 Identities=9% Similarity=0.056 Sum_probs=122.7
Q ss_pred hHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhc
Q 005974 172 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFN 251 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 251 (666)
+.....+.++...+....|.++.+..++..+.+.++++.|+||+.|+++..+.+....+.. ....++.+.+.++.+..
T Consensus 13 ~~~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~~--~~~~i~~geGi~G~v~~ 90 (167)
T 3mmh_A 13 ALYREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGPL--ACTRIPFGRGVCGQAWA 90 (167)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESSC--CCSEEETTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEecccc--cceEeccCCChHHHHHh
Confidence 3445567778888888999999999999999999999999999998877777765544432 34578889999999999
Q ss_pred ccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHH
Q 005974 252 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVV 331 (666)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~v 331 (666)
+++++.+++....+.+.. ...+.++.+++|+.. ++..+||+.+.+..++.|+++|.++++.+
T Consensus 91 ~g~~~~v~Dv~~~p~~~~----~~~~~~S~i~vPi~~--------------~g~viGVL~i~s~~~~~F~~~d~~~L~~l 152 (167)
T 3mmh_A 91 KGGTVVVGDVDAHPDHIA----CSSLSRSEIVVPLFS--------------DGRCIGVLDADSEHLAQFDETDALYLGEL 152 (167)
T ss_dssp HTSCEEESCGGGSTTCCC----SSTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCcccCcchhh----cCccCCeEEEEEecc--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 999999999888776431 234677889999643 45679999999988899999999999999
Q ss_pred HHHHHHHHH
Q 005974 332 ADQVAVALS 340 (666)
Q Consensus 332 a~~~a~al~ 340 (666)
|++++.++.
T Consensus 153 A~~la~~i~ 161 (167)
T 3mmh_A 153 AKILEKRFE 161 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 48
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.85 E-value=6.1e-08 Score=86.22 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=99.1
Q ss_pred hhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCe-EEEEEeeccccccCcccccCChhH
Q 005974 168 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLN-LELSYTLNNQIQIGSSVPINLPIV 246 (666)
Q Consensus 168 ~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (666)
...+..+++.+.++++.| ..++.+++++.+++...+.+++++|.+|++|+++.- ...+++ .........+
T Consensus 7 ~e~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~~~l~~~aa~G-~~~~l~~lr~------- 77 (160)
T 3cit_A 7 SQSRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGADNGVQTTARHG-SKERLSTLET------- 77 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC--CCCEEEEEES-CHHHHTTSCC-------
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCCCceeeeeccC-chhhhhhhhc-------
Confidence 334566788899999999 667779999999999999999999999999985432 222333 1100000011
Q ss_pred HHHhcccCceEccCCCcc-hhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-CCCccchhh
Q 005974 247 TDVFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHE 324 (666)
Q Consensus 247 ~~v~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e 324 (666)
+++.... +++. .......++.+++||. ...+..+||+.+-+. +...|+++|
T Consensus 78 -----------~~~~~~~gpr~~---~~tg~~t~svl~vPL~-------------~~~g~~~Gvlql~N~~~~~~f~~eD 130 (160)
T 3cit_A 78 -----------TADPLAIGPQWL---ERPGTHLPCVLLLPLR-------------GADEGSFGTLVLANSVAISAPDGED 130 (160)
T ss_dssp -----------CCCTTCCSCEEE---ECTTSSSCEEEEEEEE-------------CSSSSEEEEEEEEESSCCCCCCHHH
T ss_pred -----------cccccccccccc---cccCcccceeEEEeee-------------cCCCcEEEEEEEeccCCCCCCCHHH
Confidence 1111111 1221 1223446778888863 234456888887544 455899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 325 LELIDVVADQVAVALSHAAILEDSMR 350 (666)
Q Consensus 325 ~~ll~~va~~~a~al~~a~l~~~~~~ 350 (666)
++.++.+|.+++++++|++++++.+.
T Consensus 131 ~e~l~lLA~~~a~aien~rL~~~L~~ 156 (160)
T 3cit_A 131 IESLQLLATLLAAHLENNRLLEALVA 156 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 49
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.85 E-value=5.9e-09 Score=94.17 Aligned_cols=143 Identities=10% Similarity=0.026 Sum_probs=102.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhh
Q 005974 188 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 267 (666)
Q Consensus 188 ~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 267 (666)
+.|++++++.+++.+.+.++++.|+|++.++++ .+......+.+.... ..+...+.+..++.+++++.+++......+
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 358899999999999999999999999999887 555544433221100 113345567888999999999987766533
Q ss_pred hcc-ccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 005974 268 RLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 346 (666)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~ 346 (666)
... ......+.++.+.+||.. ++..+|++.+....++.|+++++++++.+|++++.+|++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFPLVT--------------EGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEEEES--------------SSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEeceEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111123456778888643 55679999999888899999999999999999999998886643
No 50
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.83 E-value=1.2e-07 Score=100.46 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=121.0
Q ss_pred hHHhHHHHHHHHHHhcccchhHHHHHHHHH----HHhhcCCCeEEEEccCCCCCeEEEEEeeccc-cccCcccccCChhH
Q 005974 172 EETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIV 246 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~~ld~~~il~~~~~~----l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 246 (666)
++.++.+.++.+.+.+ .|.+.+++.+++. +.+.++++.|+||+.++++..+......+.. ......+|.+.+.+
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~ 83 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIA 83 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchh
Confidence 4445566667666754 7777766665554 8999999999999999888766665544432 22344677888999
Q ss_pred HHHhcccCceEccCCCcc---hhhhccc-cccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-------
Q 005974 247 TDVFNSAQAMRLPYNCPL---ARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD------- 315 (666)
Q Consensus 247 ~~v~~~~~~~~l~~~~~~---~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~------- 315 (666)
+.++.+++++.+++.... ..+.... .....+.++.+.+|+.. .++..+|++.+.+.
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~g~~iGvl~l~~~~~~~~~~ 150 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLS-------------EQGRLVAVVQLLNKLKPYSPP 150 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEEC-------------SSCCEEEEEEEEEEBCSCCCT
T ss_pred hhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEEC-------------CCCCEEEEEEEeccCCccccc
Confidence 999999999999987665 3333211 11133466788888643 23456888888766
Q ss_pred --------CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 316 --------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRAR 352 (666)
Q Consensus 316 --------~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~ 352 (666)
.++.|++++.+++..++.++++++++++++++..+.+
T Consensus 151 ~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~ 195 (398)
T 1ykd_A 151 DALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQ 195 (398)
T ss_dssp TCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998877654433
No 51
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.79 E-value=6.1e-08 Score=110.48 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=124.9
Q ss_pred hHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhc
Q 005974 172 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFN 251 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 251 (666)
.++.+.+.++++.|+ .+|++++++++++.+.+.+++++|+||+.++++..+......+........+|.+ +.++.++.
T Consensus 11 ~e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~ 88 (691)
T 3ibj_A 11 TDRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVE 88 (691)
T ss_dssp TTHHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHH
Confidence 344577999999999 9999999999999999999999999999998877765443333222223456777 89999999
Q ss_pred ccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCC-CCCccchhhhHHHHH
Q 005974 252 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDV 330 (666)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~ 330 (666)
+++++.+++....+..... .....+.++.+++|+... .++..+|++.+.+. .++.|++++.+++..
T Consensus 89 ~~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI~~~------------~~g~viGvL~l~~~~~~~~ft~~d~~lL~~ 155 (691)
T 3ibj_A 89 DKKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLEGDLFTDEDEHVIQH 155 (691)
T ss_dssp HCCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEEECS------------SSCSEEEEEEEESBSSSCCCCTTHHHHHHH
T ss_pred HCCeEEeccchhccccccc-cccCCccceEEEEEeEcC------------CCCcEEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence 9999999998866543211 222344678889996432 12557899886655 456899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005974 331 VADQVAVALSHAAILEDSM 349 (666)
Q Consensus 331 va~~~a~al~~a~l~~~~~ 349 (666)
++.++++++.+++++++.+
T Consensus 156 la~~~a~al~~a~l~~~~~ 174 (691)
T 3ibj_A 156 CFHYTSTVLTSTLAFQKEQ 174 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776543
No 52
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.69 E-value=3.1e-07 Score=86.30 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=121.4
Q ss_pred hhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhc-CCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHH
Q 005974 171 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDV 249 (666)
Q Consensus 171 ~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 249 (666)
++.....+.++...+....|..+.+..++..+.+.+ +++.|++|+.+++ .+.+....+. .....++.+.+.++.+
T Consensus 24 ~~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~a 99 (195)
T 1vhm_A 24 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTA 99 (195)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHH
Confidence 344566788888889999999999999999999999 9999999999863 3444322222 2345678899999999
Q ss_pred hcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHH
Q 005974 250 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 329 (666)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 329 (666)
..+++++.+++....+.+.. .....++.+.+|+. .++..+||+.+.+..++.|++++.++++
T Consensus 100 a~tg~~i~V~Dv~~~p~~~~----~~~~~~S~l~VPI~--------------~~g~viGVL~i~s~~~~~F~e~d~~~L~ 161 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHIA----CDAASNSEIVLPLV--------------VKNQIIGVLDIDSTVFGRFTDEDEQGLR 161 (195)
T ss_dssp HHHTSCEEESCTTTCTTCCC----SCCCCSEEEEEEEE--------------ETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred HhcCCEEEECCcccCcchhh----cCCCccEEEEEeEe--------------ECCEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 99999999999888665431 23456888999964 3456799999998888899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005974 330 VVADQVAVALSHAAI 344 (666)
Q Consensus 330 ~va~~~a~al~~a~l 344 (666)
.+|.+++.+++++.+
T Consensus 162 ~lA~~ia~ale~a~~ 176 (195)
T 1vhm_A 162 QLVAQLEKVLATTDY 176 (195)
T ss_dssp HHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999976653
No 53
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.66 E-value=2e-07 Score=86.31 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccc---cccCcccccCC--hhHHHH-----------------
Q 005974 192 HTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINL--PIVTDV----------------- 249 (666)
Q Consensus 192 ~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~v----------------- 249 (666)
+++++++++++.+.+++++|.||+.++++............ ...+..+|..+ ......
T Consensus 2 ~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~~ 81 (172)
T 2k2n_A 2 DQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQSR 81 (172)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeecccccc
Confidence 67899999999999999999999999876554444443321 11222233211 111222
Q ss_pred -------hcccCceEccCCCcchhhhc-cccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccc
Q 005974 250 -------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR 321 (666)
Q Consensus 250 -------~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~ 321 (666)
..+++++.+++......+.. .......+.++.+.+|+.. ++..+|++.+.+..++.|+
T Consensus 82 g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~--------------~~~l~G~l~~~~~~~~~~~ 147 (172)
T 2k2n_A 82 SISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMH--------------HQELWGLLVSHHAEPRPYS 147 (172)
T ss_dssp CCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSC--------------SSCCCEEEEEEECSCCCCC
T ss_pred ccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEE--------------CCEEEEEEEEEeCCCCCCC
Confidence 33344444444332211110 0111234567777888643 3445888888888899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 005974 322 DHELELIDVVADQVAVALSHAAIL 345 (666)
Q Consensus 322 ~~e~~ll~~va~~~a~al~~a~l~ 345 (666)
++|+++++.+|+++++++.+++++
T Consensus 148 ~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 148 QEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999875
No 54
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=98.66 E-value=8.9e-07 Score=94.86 Aligned_cols=161 Identities=6% Similarity=-0.009 Sum_probs=110.1
Q ss_pred HHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccc--cCcccccCC--hhHHH
Q 005974 173 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 248 (666)
Q Consensus 173 ~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 248 (666)
+..+.+..++..|++++|.+++++++++++++.+++|+|.||-+++++.....+....+... .+..+|..+ .....
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 44667889999999999999999999999999999999999999999877666655554432 233333321 23345
Q ss_pred HhcccCceEccCCCcchh---------------hhccccc----------cCCCCceEEeecccccCCccccCCCCcCcc
Q 005974 249 VFNSAQAMRLPYNCPLAR---------------IRLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 303 (666)
Q Consensus 249 v~~~~~~~~l~~~~~~~~---------------~~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 303 (666)
.+..+....++|...... ++..... ...+-++.+.+|+.. .
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~-------------~- 267 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVV-------------G- 267 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEC-------------S-
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEE-------------C-
Confidence 666677777776654320 0000000 012334555555433 3
Q ss_pred cceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005974 304 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 347 (666)
Q Consensus 304 ~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~ 347 (666)
+...|++.++...+|.|+..++++++.++.+++++|.++...++
T Consensus 268 ~~LWGLl~~Hh~~pR~w~~~er~~~e~la~~ls~al~q~~~~~~ 311 (505)
T 3nhq_A 268 GKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRI 311 (505)
T ss_dssp SSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666669999999999999999999999987755443
No 55
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=98.62 E-value=4.5e-07 Score=91.14 Aligned_cols=156 Identities=7% Similarity=-0.029 Sum_probs=107.9
Q ss_pred HHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccC--cccccCC--hhHHH
Q 005974 173 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG--SSVPINL--PIVTD 248 (666)
Q Consensus 173 ~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~ 248 (666)
+..+.+..++.+|++++|.+++++++++++++.+++|||.||-+++++.....+....+....- ..+|..+ .....
T Consensus 131 ~~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ 210 (327)
T 4e04_A 131 AFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARR 210 (327)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHH
Confidence 3467789999999999999999999999999999999999999999988777776666543322 2333221 22345
Q ss_pred HhcccCceEccCCCcchh---------------hhcccc----------ccCCCCceEEeecccccCCccccCCCCcCcc
Q 005974 249 VFNSAQAMRLPYNCPLAR---------------IRLLVG----------RYVPPDIVAVRVPLLHLSNFQINDWPELPAK 303 (666)
Q Consensus 249 v~~~~~~~~l~~~~~~~~---------------~~~~~~----------~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 303 (666)
.+..+....++|...... .+.... -...+-++.+.+|+.. .
T Consensus 211 ly~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~-------------~- 276 (327)
T 4e04_A 211 LYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILR-------------G- 276 (327)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEE-------------T-
T ss_pred HHHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEE-------------C-
Confidence 566677667766554310 000000 0112344555555432 2
Q ss_pred cceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 005974 304 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 342 (666)
Q Consensus 304 ~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a 342 (666)
+...|++.....++|.|+..++++++.++.+++++|.+.
T Consensus 277 ~~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 277 ERLWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777899999999999999999999999543
No 56
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=98.62 E-value=4.2e-07 Score=92.44 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=107.1
Q ss_pred hHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccc--cCcccccCC--hhHH
Q 005974 172 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVT 247 (666)
Q Consensus 172 ~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~ 247 (666)
.+..+.+..++.+|++++|++++++++++++++.+++|||.||-+++++.....+........ .+..+|..+ ....
T Consensus 143 ~~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar 222 (337)
T 2ool_A 143 NEFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSR 222 (337)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHH
Confidence 345677899999999999999999999999999999999999999999887666666555432 223333211 1234
Q ss_pred HHhcccCceEccCCCcchh---------------hhccccc----------cCCCCceEEeecccccCCccccCCCCcCc
Q 005974 248 DVFNSAQAMRLPYNCPLAR---------------IRLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPA 302 (666)
Q Consensus 248 ~v~~~~~~~~l~~~~~~~~---------------~~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~ 302 (666)
..+..+....+++...... .+..... ...+-++.+.+|+. ..
T Consensus 223 ~ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~-------------~~ 289 (337)
T 2ool_A 223 ALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIV-------------RD 289 (337)
T ss_dssp HHHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEE-------------ET
T ss_pred HHHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEE-------------EC
Confidence 4556666666666544310 0000000 01233444555543 33
Q ss_pred ccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 005974 303 KSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 345 (666)
Q Consensus 303 ~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~ 345 (666)
+...|+++.+...+|.|+..++++++.+|.+++++|.++...
T Consensus 290 -~~LWGLl~~Hh~~pR~w~~~e~~~~e~la~~l~iai~q~e~~ 331 (337)
T 2ool_A 290 -NRLWGMISCHNLTPRFVSYEVRQACELIAQVLTWQIGVLEEA 331 (337)
T ss_dssp -TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CeeEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555599999999999999999999999666443
No 57
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=98.61 E-value=1.2e-06 Score=94.06 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=110.4
Q ss_pred HHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccc--cCcccccCC--hhHHH
Q 005974 173 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 248 (666)
Q Consensus 173 ~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 248 (666)
+..+.+..++.+|++++|.+++++++++++++.+++|||.||-+++++.....+....+... .+..+|..+ .....
T Consensus 135 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ 214 (520)
T 3zq5_A 135 GFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARR 214 (520)
T ss_dssp THHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHH
Confidence 34567888999999999999999999999999999999999999999887766666555432 233333321 22345
Q ss_pred HhcccCceEccCCCcchh-h--------------hccccc----------cCCCCceEEeecccccCCccccCCCCcCcc
Q 005974 249 VFNSAQAMRLPYNCPLAR-I--------------RLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 303 (666)
Q Consensus 249 v~~~~~~~~l~~~~~~~~-~--------------~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 303 (666)
.+..+....++|...... + +.+... ...+-++.+.+|+.. +
T Consensus 215 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~--------------~ 280 (520)
T 3zq5_A 215 LFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIK--------------D 280 (520)
T ss_dssp HHHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEE--------------T
T ss_pred HHHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEE--------------C
Confidence 566777777776654311 0 000000 013334555555432 2
Q ss_pred cceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005974 304 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 347 (666)
Q Consensus 304 ~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~ 347 (666)
+...|++.++...+|.|+..++++++.++.+++++|.++...++
T Consensus 281 ~~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiai~q~e~~~~ 324 (520)
T 3zq5_A 281 GHLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTET 324 (520)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666689999999999999999999999977765543
No 58
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.59 E-value=4.8e-07 Score=91.20 Aligned_cols=156 Identities=6% Similarity=-0.014 Sum_probs=108.0
Q ss_pred HHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccccc--CcccccCC--hhHHH
Q 005974 173 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTD 248 (666)
Q Consensus 173 ~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~ 248 (666)
+..+.+..++.+|++++|.+++++++++++++.+++|||.||-+++++.....+......... +..+|..+ .....
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 446678899999999999999999999999999999999999999998877777666654332 22333211 23345
Q ss_pred HhcccCceEccCCCcchh---------------hhcccc----------ccCCCCceEEeecccccCCccccCCCCcCcc
Q 005974 249 VFNSAQAMRLPYNCPLAR---------------IRLLVG----------RYVPPDIVAVRVPLLHLSNFQINDWPELPAK 303 (666)
Q Consensus 249 v~~~~~~~~l~~~~~~~~---------------~~~~~~----------~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 303 (666)
.+..+....++|...... ++.... -...+-++.+.+|+.. .
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~-------------~- 294 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVV-------------G- 294 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEE-------------T-
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEE-------------C-
Confidence 566666666766554311 000000 0112344555555432 2
Q ss_pred cceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 005974 304 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 342 (666)
Q Consensus 304 ~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a 342 (666)
+...|+++.+..++|.|+..++++++.++.+++++|.+.
T Consensus 295 ~~LWGLL~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 333 (343)
T 3s7o_A 295 GQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVK 333 (343)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEcCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666668899999999999999999999999544
No 59
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.45 E-value=3.6e-06 Score=78.22 Aligned_cols=146 Identities=6% Similarity=0.004 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHhhc-----CCCeEEEEccCCCC-CeEEEEEeeccccccCcccccCChhHHH
Q 005974 175 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTD 248 (666)
Q Consensus 175 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (666)
...+.++...+....|..+.+..++..+.+.+ +++.|++|+.++++ ..+.+....+ ......++.+.+.++.
T Consensus 26 ~~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g--~~~~~~i~~g~Gi~G~ 103 (180)
T 1f5m_A 26 EQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQG--KVACQMIQFGKGVCGT 103 (180)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEE--SCCCSEEETTSHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCC--CccceeecCCCcchhh
Confidence 34566777778888899999999999999999 89999999998754 4555432211 2224567888999999
Q ss_pred HhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHH
Q 005974 249 VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 328 (666)
Q Consensus 249 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll 328 (666)
+..+++++.+++....+.+. ....+.++.+++|+.. .++..+||+.+.+..++.|++++.+++
T Consensus 104 aa~~g~~v~v~Dv~~dp~~~----~~~~~~~S~l~vPi~~-------------~~g~viGVL~l~s~~~~~F~~~d~~~L 166 (180)
T 1f5m_A 104 AASTKETQIVPDVNKYPGHI----ACDGETKSEIVVPIIS-------------NDGKTLGVIDIDCLDYEGFDHVDKEFL 166 (180)
T ss_dssp HHHHTSCEEESCGGGSTTCC----CSSTTCCEEEEEEEEC-------------TTSCEEEEEEEEESSTTCCCHHHHHHH
T ss_pred hhhcCCEEEeCCcccCcccc----ccCcccceEEEEEEEc-------------CCCeEEEEEEeccCCCCCcCHHHHHHH
Confidence 99999999999988876554 1234668888999743 245579999999988899999999999
Q ss_pred HHHHHHHHHHH
Q 005974 329 DVVADQVAVAL 339 (666)
Q Consensus 329 ~~va~~~a~al 339 (666)
+.+|.+++.++
T Consensus 167 ~~la~~~a~~~ 177 (180)
T 1f5m_A 167 EKLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 60
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.44 E-value=2.6e-06 Score=77.67 Aligned_cols=144 Identities=6% Similarity=-0.011 Sum_probs=113.1
Q ss_pred HhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcC-CCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcc
Q 005974 174 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 252 (666)
Q Consensus 174 ~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 252 (666)
+...+.++..-+....|....|..++..+.+.++ ++.|++|+.+++ .+.+....+. .....++.+.+.++.+..+
T Consensus 16 ~~~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~--~a~~ri~~GeGv~G~va~t 91 (171)
T 3rfb_A 16 YQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGG--VSCIRIALGKGVCGEAAHF 91 (171)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESS--SCCCEEETTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCC--ccceEeeCCcCHHHHHHhh
Confidence 3445666666677788999999999999999997 899999999753 4444332222 2345788899999999999
Q ss_pred cCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHH
Q 005974 253 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 332 (666)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va 332 (666)
++++.+++....+.+-. .....++.+.+|+. .++..+||+.+.+..++.|+++|.++++.+|
T Consensus 92 g~~i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~--------------~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA 153 (171)
T 3rfb_A 92 QETVIVGDVTTYLNYIS----CDSLAKSEIVVPMM--------------KNGQLLGVLDLDSSEIEDYDAMDRDYLEQFV 153 (171)
T ss_dssp TSCEEESCTTSCSSCCC----SCTTCCEEEEEEEE--------------ETTEEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred CCEEEECCcccCccccc----cCcccCceEEEEEE--------------ECCEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999999988775431 23456788999964 3456799999999888899999999999999
Q ss_pred HHHHHHH
Q 005974 333 DQVAVAL 339 (666)
Q Consensus 333 ~~~a~al 339 (666)
.+++.++
T Consensus 154 ~~la~~~ 160 (171)
T 3rfb_A 154 AILLEKT 160 (171)
T ss_dssp HHHHHSC
T ss_pred HHHHHHh
Confidence 9998654
No 61
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.39 E-value=4.5e-06 Score=75.35 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcC-CCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccC
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 254 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 254 (666)
..+.++..-+....|....|..++..+.+.++ ++.|++|+.+.+ .+.+....+. .....++.+.+.++.+..+++
T Consensus 17 ~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~--~a~~ri~~GeGv~G~aa~~~~ 92 (160)
T 3ksh_A 17 LLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGH--PACVHIPIGKGVCGTAVSERR 92 (160)
T ss_dssp HHHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCC--cccEEeeCCCCHHHHHHhhCC
Confidence 34555555567778999999999999999997 999999999754 3444332222 234578889999999999999
Q ss_pred ceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHH
Q 005974 255 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 334 (666)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~ 334 (666)
++.+++....+.+-. .....++.+.+|+.. ++..+||+.+.+..++.|+++|.++++.+|.+
T Consensus 93 ~i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 154 (160)
T 3ksh_A 93 TQVVADVHQFKGHIA----CDANSKSEIVVPIFK--------------DDKIIGVLDIDAPITDRFDDNDKEHLEAIVKI 154 (160)
T ss_dssp CEEESCGGGSTTCCG----GGTTCSEEEEEEEEE--------------TTEEEEEEEEEESSSSCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCccccc----cCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999988765421 234567888999643 45679999999988899999999999999999
Q ss_pred HHHHH
Q 005974 335 VAVAL 339 (666)
Q Consensus 335 ~a~al 339 (666)
++-.+
T Consensus 155 la~~~ 159 (160)
T 3ksh_A 155 IEKQL 159 (160)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 62
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.36 E-value=1.3e-06 Score=89.40 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
.+.+++.||++||+++. ++.+.+.+.. ++. ..|+|.|||+||++++++.+|++|++++
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--GGA-------------------KLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--CCc-------------------eEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 47889999999999987 4666666643 211 4799999999999999999999998876
Q ss_pred CCC-------CCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 571 GSS-------CQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 571 ~~~-------~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
... ...++.|+||+.+..+ +++++.|.
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~ 115 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASISSV-----SRLTLTSR 115 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEE
T ss_pred ccccchhhhccccCccccchhhhhcC-----CcEEEEEe
Confidence 422 1223589999877543 36777776
No 63
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.34 E-value=8.2e-07 Score=93.86 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHHHhhcc----CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhh
Q 005974 488 DEKRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~----~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 563 (666)
+...+..++.||+.||++|+ +.|.+.+.+....++ .+.++|+|+|+|+++.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~-------------------~l~i~V~D~G~g~~~~------ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG-------------------NVRASVIDRGQWKDHR------ 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS-------------------EEEEEEEESCBC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC-------------------EEEEEEEECCCCCCCC------
Confidence 45678999999999999998 357788877665322 3999999999999875
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 005974 564 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 564 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
. ...+.|+||.+++.+++.+ .+++. +.|+++++.+|++.
T Consensus 349 ----~------~~~~~G~GL~lv~~l~~~~----~~~~~--~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 349 ----D------GARGRGRGLAMAEALVSEA----RIMHG--AGGTTATLTHRLSR 387 (399)
T ss_dssp ------------------CHHHHHTTSSEE----EEEEE--TTEEEEEEEEECEE
T ss_pred ----C------CCCCCCcHHHHHHHHHHhe----eeEEC--CCcEEEEEEEEcCC
Confidence 0 1135699999999888754 45655 57999999999854
No 64
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.32 E-value=1.1e-06 Score=90.99 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
.+.+++.||++||+++. ++.+.+.+... +. ..|+|.|||+||++++++++|++|++++
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~~-~~--------------------~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKDY-GV--------------------DLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEGG-GT--------------------SEEEEEECSCCCCGGGSGGGGC------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEeC-Cc--------------------EEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 47899999999999976 45666665431 11 5799999999999999999999999876
Q ss_pred CCCC------CCCCc-cchHHHHHHHHHHhCCEEEEEec
Q 005974 571 GSSC------QTPRA-GLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 571 ~~~~------~~~g~-GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
.... ...|. |+||+.+..+ . ++.+.+.
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~ 125 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTC 125 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEE
T ss_pred cccccchhcccccCCCCchhhhhhhh----c-cEEEEEc
Confidence 4321 01244 8888877554 3 6777776
No 65
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.31 E-value=1.9e-06 Score=87.88 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
++.+++.||+.||+++. ++.+.+.+. .++. ..|+|.|||+||++++++.+|++|++++
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~~~-------------------~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EGGL-------------------KLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GGGT-------------------SEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eCCE-------------------EEEEEEECCcCcChHHhhhhhccccccc
Confidence 46799999999999985 456666663 2221 5799999999999999999999999987
Q ss_pred CCCCC------C-CCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 005974 571 GSSCQ------T-PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 614 (666)
Q Consensus 571 ~~~~~------~-~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~l 614 (666)
..... . +-.|.||+.+..+. ++++.|...|....+.+.+
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~~~~~~~~~~ 131 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTADGKCAYRASY 131 (348)
T ss_dssp CCCC---------CCTTCHHHHHHHSS-----EEEEEEECTTCSSEEEEEE
T ss_pred cCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECCCCceEEEEE
Confidence 54321 1 12467776655432 6888876333223333433
No 66
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.28 E-value=4.7e-06 Score=69.92 Aligned_cols=148 Identities=12% Similarity=0.219 Sum_probs=109.7
Q ss_pred HhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccC---ccccc---CChhHHHHhcccCceEc
Q 005974 185 IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG---SSVPI---NLPIVTDVFNSAQAMRL 258 (666)
Q Consensus 185 i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~v~~~~~~~~l 258 (666)
++.-.|.+++......-+.++.+..-.++|+.|.....+.-+.+.+-+.... ..+|. .-|.++..++......+
T Consensus 8 ~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll~ 87 (162)
T 3eea_A 8 LSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLML 87 (162)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEEE
T ss_pred HhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcccc
Confidence 4556688999999999999999999999999999988888888877543211 23333 45778889988888887
Q ss_pred cCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCC-ccchhhhHHHHHHHHHHHH
Q 005974 259 PYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQVAV 337 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~~ll~~va~~~a~ 337 (666)
++.....-+.+ ...........+.+| +..|+..+||+...+...| .|+.+|+.++..+|+++|+
T Consensus 88 ~dp~~s~l~tp-~l~k~~~~~~ILgVP--------------L~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAAI 152 (162)
T 3eea_A 88 TDPGSSDLLTP-KLRKLLRNLCVLAVP--------------MVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAAL 152 (162)
T ss_dssp SCGGGCTTSCH-HHHHHTTTEEEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhccH-HHHHHHhhCeEEEec--------------ceeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHH
Confidence 76544322221 122223445566777 4556778999999999888 9999999999999999999
Q ss_pred HHHHHHHHHH
Q 005974 338 ALSHAAILED 347 (666)
Q Consensus 338 al~~a~l~~~ 347 (666)
|+++++++++
T Consensus 153 AIdnArLldE 162 (162)
T 3eea_A 153 VVSHMQLFDE 162 (162)
T ss_dssp HHHHHHTC--
T ss_pred HHHHhhhhcC
Confidence 9999988753
No 67
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.27 E-value=1.1e-07 Score=111.13 Aligned_cols=171 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred hchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCC--eEE------EEEeecccc--ccCcc
Q 005974 169 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLE------LSYTLNNQI--QIGSS 238 (666)
Q Consensus 169 ~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~------~~~~~~~~~--~~~~~ 238 (666)
+++.++...+.++++.|.+.+|++++++.+++.+.+.+++++|+||+.++++. ... ...+..... .....
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 45566778899999999999999999999999999999999999999987743 111 111211111 23345
Q ss_pred cccCChhHHHHhcccCceEccCCCcchhhhcccc-ccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCC
Q 005974 239 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 317 (666)
Q Consensus 239 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~ 317 (666)
+|.+.+.++.++.+++++.+++....+.+..... ....+.++.+++|+. .+++..+|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL~-------------~~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIK-------------NHREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEeeE-------------cCCCCEEEEEEEEecCC
Confidence 6777888999999999999998877665542211 112234566667753 33556789998887654
Q ss_pred C---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 318 R---KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 352 (666)
Q Consensus 318 ~---~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~ 352 (666)
+ .|+++|.++++.+|.+++++|.+++++++..+.+
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~ 330 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLEN 330 (878)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 9999999999999999999999999887665443
No 68
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.26 E-value=2.7e-07 Score=88.20 Aligned_cols=63 Identities=16% Similarity=0.024 Sum_probs=18.6
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 005974 590 VNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 590 v~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvDD~~~~r~v~~ 661 (666)
+..|||+|+++|+ +|+||+|++.+|+.....+.... .+......++.+|||||||+.+|..++
T Consensus 16 ~~~hgG~i~v~S~-~g~Gs~f~~~lP~~~~~~~~~~~--------~~~~~~~~~~~~ILiVdDd~~~~~~l~ 78 (206)
T 3mm4_A 16 RGSHMASTDSESE-TRVKSVRTGRKPIGNPEDEQETS--------KPSDDEFLRGKRVLVVDDNFISRKVAT 78 (206)
T ss_dssp ------------------------------------------------CTTTTTTCEEEEECSCHHHHHHHH
T ss_pred ccccCCceeeecc-CCCcceeeeccCCCCCccccccc--------CCCcccccCCCEEEEEeCCHHHHHHHH
Confidence 4679999999999 99999999999986543322211 111223457889999999999998754
No 69
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.15 E-value=1.3e-05 Score=74.80 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHH
Q 005974 378 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 457 (666)
Q Consensus 378 ~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~ 457 (666)
..++...||+.|-|++|.|++++= ..++..+|+..+....+.... +.++. .-.+..++
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~~~~-------~~~i~---------~P~la~lL-- 80 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKHESK-------LSNLK---------TPHLAFDF-- 80 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHH-------HHTTT---------CHHHHHHH--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHH-------HHhCC---------CHHHHHHH--
Confidence 455666999999999999998863 234556666555555444321 22221 11122222
Q ss_pred HHHHHHHHhhcCCceEEE-EeCC--CCCceEEecHHHHHHHHHHHHHHHhhc----cCCCcEEEEEEeec-CCCCCCCCC
Q 005974 458 VIKLIKPVASCKKLSMTL-IMAP--ELPTYAVGDEKRLMQTILNIVGNAVKF----TKEGYVSIIASVAK-PESLSDWRP 529 (666)
Q Consensus 458 ~~~~~~~~~~~~~i~~~~-~~~~--~~~~~v~~d~~~l~~vl~nLl~NAik~----~~~g~v~i~~~~~~-~~~~~~~~~ 529 (666)
- ....+.+++.+.+ .+++ .++. .+..+..++ +.+.||+.. ...+.+.+.+.... ++
T Consensus 81 --l--~K~~~a~e~~i~lev~~~~s~l~~----~~~~lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~------- 144 (192)
T 1ixm_A 81 --L--TFNWKTHYMTLEYEVLGEIKDLSA----YDQKLAKLM-RKLFHLFDQAVSRESENHLTVSLQTDHPDR------- 144 (192)
T ss_dssp --H--HGGGSCCSSEEEEEEESSCCCCTT----THHHHHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCCSSS-------
T ss_pred --H--HHHHHhccCCeEEEEecCccccCC----CcHHHHHHH-HHHHHHHHhhhccCCCCeEEEEEEEecCCC-------
Confidence 1 1123456677776 3333 2222 333443333 222444433 23466676665531 12
Q ss_pred CCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccc
Q 005974 530 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ 568 (666)
Q Consensus 530 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~ 568 (666)
.+.|.|.|+|++|+++.++++|+..++
T Consensus 145 ------------~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 145 ------------QLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp ------------SCEEEEEEESCBSCGGGCC--------
T ss_pred ------------EEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 289999999999999999999985543
No 70
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.13 E-value=3e-07 Score=107.32 Aligned_cols=174 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhchhHHhHHHHHHHHHHh-cccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEE-Eeecc-c--------cccC
Q 005974 168 ILTQEETGRHVRMLTHEIR-STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNN-Q--------IQIG 236 (666)
Q Consensus 168 ~~~~~~~~~~l~~lt~~i~-~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~-~--------~~~~ 236 (666)
.+++.++.+.+.++++.+. ++.+.+++++.++..+.+.+++++|+|++.++++..+... ..+.. . ....
T Consensus 326 ~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~ 405 (878)
T 3bjc_A 326 SLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREH 405 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhccccccccccccccccc
Confidence 3444445666777888885 4579999999999999999999999999999876644332 11111 0 0113
Q ss_pred cccccCChhHHHHhcccCceEccCCCcchhhhcccccc-C---CCCceEEeecccccCCccccCCCCcCcc-cceEEEEE
Q 005974 237 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRY-V---PPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVLM 311 (666)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~~vl~ 311 (666)
..+|.+.+.++.+..+++++.+++......+....... . .+.++.+++||.. .+ +..+||+.
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~-------------~~~g~viGVL~ 472 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKN-------------GKKNKVIGVCQ 472 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEec-------------CCCCcEEEEEE
Confidence 34566777888999999999998877666554221111 1 2356677777533 22 45688888
Q ss_pred eeCCCC------CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 312 LPTDGG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 354 (666)
Q Consensus 312 ~~~~~~------~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~ 354 (666)
+.+..+ +.|++.++++++.+|.++++||.+++++++.++..++
T Consensus 473 l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 473 LVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp -------------------------------------------------
T ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876654 6999999999999999999999999999888765544
No 71
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.13 E-value=1.3e-06 Score=91.16 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=60.4
Q ss_pred EecHHHHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhh----
Q 005974 486 VGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 561 (666)
Q Consensus 486 ~~d~~~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 561 (666)
.++...+.+++.|+++||+++ ..+.|.+.+.. + -.|+|.|||+|||+++.++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~--~---------------------~~i~V~DnG~GIp~~~~~~~~~~ 86 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE--D---------------------GSLTVEDNGRGIPVDLMPEEGKP 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT--T---------------------SCEEEEECSSCCCCSEETTTTEE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc--C---------------------CEEEEEEcCCCCCHHHhhhcccc
Confidence 357778888888888888874 34556665532 1 1689999999999999887
Q ss_pred ----hhccccccCCC-----CCCCCCccchHHHHHHHHHHh
Q 005974 562 ----LFTKFAQSRGS-----SCQTPRAGLGLAICRRFVNLM 593 (666)
Q Consensus 562 ----if~~f~~~~~~-----~~~~~g~GlGL~i~k~iv~~~ 593 (666)
+|..++.+... .....+.|+||++|+.+.+.+
T Consensus 87 ~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 87 AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp HHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred chhhheeeeeecccccCccccccCCCCCcceeeecccccce
Confidence 89877664321 111236899999999998743
No 72
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.12 E-value=4.1e-05 Score=85.81 Aligned_cols=158 Identities=9% Similarity=0.026 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccccc--CcccccCC--hhHHHHhc
Q 005974 176 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTDVFN 251 (666)
Q Consensus 176 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~v~~ 251 (666)
..+..+..+|++++|.+++++++++++++.+++|++.||.+++++....++....+.... +..+|..+ ......+.
T Consensus 132 ~~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 211 (635)
T 4eho_A 132 GTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYE 211 (635)
T ss_dssp TTSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHH
Confidence 345667778999999999999999999999999999999999998887777665544332 22333321 22345556
Q ss_pred ccCceEccCCCcchh---------------hhccccccC----------CCCceEEeecccccCCccccCCCCcCcccce
Q 005974 252 SAQAMRLPYNCPLAR---------------IRLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELPAKSYA 306 (666)
Q Consensus 252 ~~~~~~l~~~~~~~~---------------~~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 306 (666)
.+....+.+...... .+....... .+-++.+.+|+. .++..
T Consensus 212 ~~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~--------------~~~~L 277 (635)
T 4eho_A 212 RQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLV--------------VGGKL 277 (635)
T ss_dssp HSCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEE--------------ETTEE
T ss_pred cCCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEE--------------Eccee
Confidence 666666665433210 000000000 123444555543 23445
Q ss_pred EEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005974 307 VMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 347 (666)
Q Consensus 307 ~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~ 347 (666)
.|+++++...+|.|+..++.+++.++.+++++|.++..+++
T Consensus 278 WGLl~~h~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 318 (635)
T 4eho_A 278 WGLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQ 318 (635)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHH
Confidence 66677777789999999999999999999999977765543
No 73
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.08 E-value=6.1e-06 Score=84.92 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccC
Q 005974 491 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 570 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 570 (666)
.+.+++.||++||+++. +..|.+.+. +++. ..|+|.|||+||++++++.+|++|++++
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DYGL-------------------ESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TTTT-------------------SEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eCCE-------------------EEEEEEECCCCcChhHhccceeccccCc
Confidence 46789999999999976 456666653 2221 5899999999999999999999999987
Q ss_pred CCCCC--C--C--C-ccchHHHHHHHHHHhCCEEEEEec
Q 005974 571 GSSCQ--T--P--R-AGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 571 ~~~~~--~--~--g-~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
..... . . | .|-||+.+..+ . ++++.|.
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~av----S-~l~V~sr 116 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGI----A-KLSVITT 116 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHS----S-EEEEEEE
T ss_pred CCchhhhhhhhccCccchHHHHhhcc----C-EEEEEEE
Confidence 54321 0 1 2 26667655443 2 6777776
No 74
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.07 E-value=2e-05 Score=66.65 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 360 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 434 (666)
Q Consensus 360 ~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 434 (666)
..+.....++++..+.+.+|++.++||+|||++.|.++++.+.+. .....+.+...++++..++++++++
T Consensus 44 ~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 44 KSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444445556677899999999999999999999987542 3445688999999999999999886
No 75
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.69 E-value=9.2e-06 Score=78.03 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+|+.||+++.. .+.+.|.+....+. ..|.|.|||.||++++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC--------------------CEEEEEEcCCCCCHHH
Confidence 588999999999864 23444544433322 3689999999999999
Q ss_pred hhhhhcccc
Q 005974 559 IPLLFTKFA 567 (666)
Q Consensus 559 ~~~if~~f~ 567 (666)
+...|..+.
T Consensus 89 l~~~l~~ia 97 (220)
T 2wer_A 89 LINNLGTIA 97 (220)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHHhHh
Confidence 877765443
No 76
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.47 E-value=0.00039 Score=58.48 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 367 REAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 435 (666)
Q Consensus 367 ~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 435 (666)
+.++...+.+.+++..++||+++|++.+.+.++.+... ..+..+.+.+.+.++..+++++++++
T Consensus 51 ~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 51 RSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444567899999999999999999999877543 25667889999999999999988764
No 77
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.38 E-value=0.0001 Score=72.23 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+|+.||+++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~--------------------~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe--------------------eEEEEEECCcCCCHHH
Confidence 378999999998764 24455555443332 3689999999999999
Q ss_pred hhhhhccccccCC-----------CCCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 559 IPLLFTKFAQSRG-----------SSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 559 ~~~if~~f~~~~~-----------~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
+...|....+++. ........|+|++.+..+ .-++.+.|.
T Consensus 131 L~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr 181 (264)
T 1yc1_A 131 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITK 181 (264)
T ss_dssp HHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEE
T ss_pred HHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEe
Confidence 8766654433221 111112358998866543 345666554
No 78
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.33 E-value=3.2e-05 Score=74.89 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+|+.||+++.. .+.+.|.+....+. ..|.|.|||.||++++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 109 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--------------------eEEEEEECCCCCCHHH
Confidence 478999999999862 33344444433332 2589999999999999
Q ss_pred hhhhhccccccCCC-------------CCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 559 IPLLFTKFAQSRGS-------------SCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 559 ~~~if~~f~~~~~~-------------~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
+...|..+.+++.. .......|+|++.+-. ..-++.|.|.
T Consensus 110 l~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr 162 (235)
T 2ior_A 110 VIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTR 162 (235)
T ss_dssp HHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEE
T ss_pred HHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEe
Confidence 98877554433210 0011236888875532 3345666665
No 79
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.29 E-value=2.5e-05 Score=76.68 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh
Q 005974 495 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 495 vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 559 (666)
++.+||+||.++.. .+.+.|.+....+. -.|+|.|||+||+.+++
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~l~I~DnGiGMt~edl 91 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREEL 91 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc--------------------eEEEEEECCCCCCHHHH
Confidence 78899999999853 23344444443332 36899999999999987
Q ss_pred hhhhc
Q 005974 560 PLLFT 564 (666)
Q Consensus 560 ~~if~ 564 (666)
...|.
T Consensus 92 ~~~l~ 96 (269)
T 1qy5_A 92 VKNLG 96 (269)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 65553
No 80
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.20 E-value=0.0005 Score=71.47 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=34.4
Q ss_pred EEEEeecCCCCCCCC--------hhhhhccccccCCCCC---C-CCC-ccchHHHHHHHHH
Q 005974 544 RVQVNDSGCGVPPQD--------IPLLFTKFAQSRGSSC---Q-TPR-AGLGLAICRRFVN 591 (666)
Q Consensus 544 ~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~~~~---~-~~g-~GlGL~i~k~iv~ 591 (666)
.|+|.|||+|||.+. .+.+|..+..+..-.+ . ..| .|.||+.+..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 589999999999998 5778887655432111 1 123 7999999988764
No 81
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.95 E-value=0.0013 Score=68.21 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh--------
Q 005974 491 RLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI-------- 559 (666)
Q Consensus 491 ~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~-------- 559 (666)
-+.+++.+++.||++.+- ...|.|.+. .++ .|+|.|||+|||.+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~--~~g---------------------~I~V~DnG~GIp~~~~~~~~~~~~ 90 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADN---------------------SVSVQDDGRGIPTGIHPEEGVSAA 90 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--TTS---------------------CEEEEECSSCCCCSBCTTTSSBHH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEe--CCC---------------------EEEEEECCCCcccCcccccCcchH
Confidence 688888899999888743 344554443 221 5899999999999884
Q ss_pred hhhhccccccCCCCC---C-CCC-ccchHHHHHHHHH
Q 005974 560 PLLFTKFAQSRGSSC---Q-TPR-AGLGLAICRRFVN 591 (666)
Q Consensus 560 ~~if~~f~~~~~~~~---~-~~g-~GlGL~i~k~iv~ 591 (666)
+.+|..+..+..-.+ . ..| .|.|++.+..+.+
T Consensus 91 elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 91 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp HHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred HHhheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 346764444322111 1 113 7999999988764
No 82
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.87 E-value=0.00019 Score=68.61 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
-++.+|++||.++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~--------------------~~i~V~DnG~GMs~ed 94 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 94 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCe--------------------eEEEEEeCCCCCCHHH
Confidence 467899999998752 12344555443332 3689999999999998
Q ss_pred hhhhhccccccC-----------CCCCCCCCccchHHHHHHHHHHhCCEEEEEec
Q 005974 559 IPLLFTKFAQSR-----------GSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 559 ~~~if~~f~~~~-----------~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
+...|....+++ ......+-.|+||+.+-. ..-++.|.|.
T Consensus 95 l~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr 145 (228)
T 3t0h_A 95 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITK 145 (228)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEE
T ss_pred HHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEe
Confidence 865554332211 111111245888876632 2236777665
No 83
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.87 E-value=0.00028 Score=68.16 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+|++||+++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~--------------------~~i~I~DnG~GMt~ed 94 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 94 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC--------------------CEEEEEECCcCCCHHH
Confidence 468899999999853 12234444333322 2689999999999999
Q ss_pred hhhhhccccccCCC------C-------CC-C--CCccchHHHHHHHHHHhCCEEEEEec
Q 005974 559 IPLLFTKFAQSRGS------S-------CQ-T--PRAGLGLAICRRFVNLMGGHIWLDSE 602 (666)
Q Consensus 559 ~~~if~~f~~~~~~------~-------~~-~--~g~GlGL~i~k~iv~~~gG~I~v~S~ 602 (666)
+...|....++... . .. . ...|+|++.+-.+ ..++.|.|.
T Consensus 95 l~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~v----a~~v~V~Sr 150 (236)
T 2gqp_A 95 LVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSK 150 (236)
T ss_dssp HHHHHHCC---------------------CHHHHHHTTCGGGGGGGT----EEEEEEEEE
T ss_pred HHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhc----CCEEEEEEe
Confidence 87777544332110 0 00 0 1258887655433 356888776
No 84
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=96.69 E-value=0.00063 Score=66.51 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh
Q 005974 495 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 495 vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 559 (666)
.+.+||+||.++.. .+.+.|.+...... -.|+|.|||+||+++++
T Consensus 50 fLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~--------------------~tLtI~DNGiGMt~edL 109 (281)
T 3peh_A 50 FLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK--------------------NILSITDTGIGMTKVDL 109 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC--------------------cEEEEEeCCCCCCHHHH
Confidence 57888899888752 13344444443332 26899999999999987
Q ss_pred hh
Q 005974 560 PL 561 (666)
Q Consensus 560 ~~ 561 (666)
..
T Consensus 110 ~~ 111 (281)
T 3peh_A 110 IN 111 (281)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 85
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.48 E-value=0.0029 Score=68.50 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+||+||.++.. .+...|.+....+. -.|+|.|||.||++++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 468899999999861 22233444333332 2689999999999998
Q ss_pred hhhhhcc
Q 005974 559 IPLLFTK 565 (666)
Q Consensus 559 ~~~if~~ 565 (666)
+..-+..
T Consensus 90 l~~~l~t 96 (559)
T 1y4s_A 90 VIDHLGT 96 (559)
T ss_dssp HHHHHSC
T ss_pred HHHHHhh
Confidence 7665543
No 86
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.48 E-value=0.0044 Score=58.09 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh--------hh
Q 005974 493 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PL 561 (666)
Q Consensus 493 ~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~ 561 (666)
..++.+|+.||++... ...|.+.+ ..+. .|+|.|||.|||.++. +.
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g---------------------~i~V~DnG~GIp~~~~~~~~~~~~e~ 75 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ---------------------SLEVIDDGRGMPVDIHPEEGVPAVEL 75 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTCSSBHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC---------------------EEEEEECCCCcCcccccccCcchhhe
Confidence 7789999999998843 34455544 2221 5889999999999884 34
Q ss_pred h-hccccccCCCCC---CCCC-ccchHHHHHHHH
Q 005974 562 L-FTKFAQSRGSSC---QTPR-AGLGLAICRRFV 590 (666)
Q Consensus 562 i-f~~f~~~~~~~~---~~~g-~GlGL~i~k~iv 590 (666)
+ +....+++-... ...| .|.||+.+..+.
T Consensus 76 i~~~~hatsK~~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 76 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp HHHCC---------------------CHHHHHTE
T ss_pred eeeeeccccCcCCCcccccCcccceecchhhccc
Confidence 3 344333321111 0112 578888877765
No 87
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=96.39 E-value=0.0032 Score=64.89 Aligned_cols=76 Identities=9% Similarity=-0.075 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhc
Q 005974 488 DEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFT 564 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~ 564 (666)
+..-+.+++.+|++||++.+- ...|.|.+ ..++ .|+|.|||.|||. +-+|.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i--~~~g---------------------~I~V~DnGrGIp~---e~v~~ 80 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV--GGDG---------------------SIALFCTSRTVTA---ENLVR 80 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEEEESSCCH---HHHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE--eCCC---------------------EEEEEECCCCcCH---hHeee
Confidence 567899999999999999743 23444443 3221 5899999999998 55663
Q ss_pred cccccCCCC----CCCCCccchHHHHHHHH
Q 005974 565 KFAQSRGSS----CQTPRAGLGLAICRRFV 590 (666)
Q Consensus 565 ~f~~~~~~~----~~~~g~GlGL~i~k~iv 590 (666)
...+++-.. +...=+| |++.+..+-
T Consensus 81 lhagsKf~~~~~~~~y~vsG-Gls~vnalS 109 (369)
T 3cwv_A 81 VATGAGFLGRPPGDGWGWDS-MLVVSLALS 109 (369)
T ss_dssp HHTTTTGGGSSCCCSTTTTS-SHHHHHHTE
T ss_pred eecCCCcCCCcccccccccC-HHHHHHHhh
Confidence 332222111 1122235 887776653
No 88
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=96.37 E-value=0.0004 Score=67.17 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+|++||.++.. ...+.|.+....+. -.|+|.|||.||++++
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnG~GMt~ed 122 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCc--------------------eEEEEecCCCCcCHHH
Confidence 468889999988752 12344444443332 3689999999999998
Q ss_pred hhhhh
Q 005974 559 IPLLF 563 (666)
Q Consensus 559 ~~~if 563 (666)
+..-|
T Consensus 123 l~~~l 127 (256)
T 3o0i_A 123 LINNL 127 (256)
T ss_dssp HHTHH
T ss_pred HHHHH
Confidence 75444
No 89
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0026 Score=70.11 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh
Q 005974 495 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 559 (666)
Q Consensus 495 vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 559 (666)
++.+||+||.++.. .+.+.|.+....+. -.|+|.|||+||+.+++
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~edl 89 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAEL 89 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC--------------------CEEEEEECCCCCCHHHH
Confidence 78899999998862 22233444333322 26899999999999887
Q ss_pred hhhhcccccc-C----------CCCCCCCCccchHHHHHHHHH------------------HhCCEEEEEe----cCCCC
Q 005974 560 PLLFTKFAQS-R----------GSSCQTPRAGLGLAICRRFVN------------------LMGGHIWLDS----EGLDK 606 (666)
Q Consensus 560 ~~if~~f~~~-~----------~~~~~~~g~GlGL~i~k~iv~------------------~~gG~I~v~S----~~~g~ 606 (666)
..-+...-++ . ......+..|+|++-+-..++ .-||...++. ...+.
T Consensus 90 ~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~ 169 (677)
T 2cg9_A 90 INNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGR 169 (677)
T ss_dssp HGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSS
T ss_pred HHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCC
Confidence 6544322111 0 011112345788865532221 1134566665 22467
Q ss_pred ceEEEEEEE
Q 005974 607 GSTVTFLVK 615 (666)
Q Consensus 607 Gt~~~i~lP 615 (666)
||++++.|.
T Consensus 170 GT~I~L~Lk 178 (677)
T 2cg9_A 170 GTILRLFLK 178 (677)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 999888864
No 90
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=96.24 E-value=0.008 Score=56.98 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh-------
Q 005974 490 KRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------- 559 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------- 559 (666)
.-+.+++.+++.||++.+- ...|.+.+. .+. .++|.|||+|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~--~~g---------------------~i~V~DnGrGIp~~~~~~~~~~~ 90 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADN---------------------SVSVQDDGRGIPTGIHPEEGVSA 90 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEEC--TTS---------------------CEEEEECSSCCCCSEETTTTEEH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEe--CCC---------------------cEEEEECCcCcccccccccCcch
Confidence 5788999999999998753 344444442 221 5889999999999874
Q ss_pred -hhhhccccccCCCCC-----CCCCccchHHHHHHHHH
Q 005974 560 -PLLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 591 (666)
Q Consensus 560 -~~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 591 (666)
+-+|.....+.+-.+ ...-.|.|++.+..+-+
T Consensus 91 ~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~ 128 (220)
T 4duh_A 91 AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 (220)
T ss_dssp HHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEE
T ss_pred hhheeeecccCCCcCCCccccccCccceecchhccccc
Confidence 344532222111110 01126889998887654
No 91
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=96.17 E-value=0.00076 Score=64.50 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.5
Q ss_pred EEEEEeecCCCCCCCChh
Q 005974 543 LRVQVNDSGCGVPPQDIP 560 (666)
Q Consensus 543 l~i~V~D~G~Gi~~~~~~ 560 (666)
-.|+|.|||.||+++++.
T Consensus 86 ~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp TEEEEEECSCCCCHHHHH
T ss_pred cEEEEEeCCCCCCHHHHH
Confidence 368999999999999873
No 92
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=95.70 E-value=0.0033 Score=68.95 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
.++.+||+||+++.. .+...|.+....+. -.|+|.|||+||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 478999999999861 22233444333332 2689999999999998
Q ss_pred hhhhhcc
Q 005974 559 IPLLFTK 565 (666)
Q Consensus 559 ~~~if~~ 565 (666)
+..-+..
T Consensus 90 l~~~l~t 96 (624)
T 2ioq_A 90 VIDHLGT 96 (624)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7655443
No 93
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=95.69 E-value=0.021 Score=59.24 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhcc-C---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC------
Q 005974 489 EKRLMQTILNIVGNAVKFT-K---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD------ 558 (666)
Q Consensus 489 ~~~l~~vl~nLl~NAik~~-~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~------ 558 (666)
..-|.+++.+++.||++.+ . ...|.|.+. .++ -.|+|.|||.|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~--~~~--------------------~~I~V~DnGrGIPv~~h~~~~~ 107 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTID--PEN--------------------NLISIWNNGKGIPVVEHKVEKM 107 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTT--------------------TEEEEEEESSCCCCSEETTTTE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE--CCC--------------------CEEEEEECCCcccCccccccCc
Confidence 4579999999999999986 1 344554443 221 1689999999999987
Q ss_pred --hhhhhccccc-cCCC----CCCCCCccchHHHHHHHH
Q 005974 559 --IPLLFTKFAQ-SRGS----SCQTPRAGLGLAICRRFV 590 (666)
Q Consensus 559 --~~~if~~f~~-~~~~----~~~~~g~GlGL~i~k~iv 590 (666)
.+-+|..... ++-. .....-.|.|++.+..+-
T Consensus 108 ~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 108 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred cchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 3445552222 1111 011123689999887663
No 94
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=95.60 E-value=0.0036 Score=68.93 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 494 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 494 ~vl~nLl~NAik~~~---------------~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
-++.+||+||.++.. .+.+.|.+....+. -.|+|.|||+||+.++
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 107 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC--------------------CEEEEEECCCCCCHHH
Confidence 478999999999861 23344444443332 2688999999999998
Q ss_pred hhhhh
Q 005974 559 IPLLF 563 (666)
Q Consensus 559 ~~~if 563 (666)
+..-+
T Consensus 108 l~~~l 112 (666)
T 2o1u_A 108 LVKNL 112 (666)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76554
No 95
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.51 E-value=0.012 Score=55.88 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHHHhhccCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC-------h
Q 005974 488 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-------I 559 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~~g-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~-------~ 559 (666)
+..-|.+++.+++.||++.+..| ...|.+....+. .++|.|||.|||.+. .
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g---------------------~i~V~DnG~GIp~~~h~~~~~~~ 95 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG---------------------SLTVQDHGRGMPTGMHAMGIPTV 95 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEECSSCCCCSBCGGGCBHH
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC---------------------eEEEEEcCCCccccccccCceeh
Confidence 45678899999999999875322 223333332221 588999999999998 5
Q ss_pred hhhhccccccCCCCC-----CCCCccchHHHHHHHHH
Q 005974 560 PLLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 591 (666)
Q Consensus 560 ~~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 591 (666)
+-+|.....+..-.+ ...-.|.|++.+..+-+
T Consensus 96 e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~ 132 (226)
T 4emv_A 96 EVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS 132 (226)
T ss_dssp HHHHHCBC--------------CGGGCCHHHHHHTEE
T ss_pred heeEEeecccCccCccceEeccccccccchhhhhccc
Confidence 556643322211110 11126889988876643
No 96
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=95.37 E-value=0.017 Score=53.81 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCC
Q 005974 488 DEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 558 (666)
Q Consensus 488 d~~~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 558 (666)
+..-+.+++.+++.||++.+- ...|.+.+. .++ .++|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~--~~g---------------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIE--KDN---------------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEE--GGG---------------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEe--CCC---------------------eEEEEECCCCccccc
Confidence 567899999999999999642 345555443 221 689999999999873
No 97
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=95.29 E-value=0.15 Score=50.40 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEEccCCCC-CeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhhhc
Q 005974 191 RHTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 269 (666)
Q Consensus 191 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 269 (666)
+..+.+..++.+.+..+++.++||..+.++ .........++ ...+..+++.+..++.+++...+.+......
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~~--- 96 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLERG--- 96 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC---------
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhcc---
Confidence 345577888999999999999999887665 22222222222 2356678999999999999988875422110
Q ss_pred cccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 005974 270 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 346 (666)
Q Consensus 270 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~ 346 (666)
.........+++||. ..++...|++++..-....++++.+.++..++++++.++.++....
T Consensus 97 ---~~~~~sryL~viPLl-------------d~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~~ 157 (298)
T 4eu0_A 97 ---EQRAHSAAAVCVPLV-------------DTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRAL 157 (298)
T ss_dssp ----------CCEEEEEE-------------CTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred ---ccccccceEEEEEee-------------cCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 001233556677864 3455679999999988889999999999999999999998887653
No 98
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=94.62 E-value=0.058 Score=56.25 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhcc----CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhh----
Q 005974 490 KRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 561 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~----~~g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 561 (666)
.-|.+++.++|.||++.+ ....|.+.+.. ++ -.++|.|||+|||.+..+.
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--d~--------------------~sI~V~DnGrGIPv~~h~~~g~~ 120 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA--EE--------------------HTIEVKNDGKGIPIEIHNKENIY 120 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--TT--------------------TEEEEEEESSCCCCSBCTTTCSB
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--CC--------------------CEEEEEECCCcccCcccccCCcc
Confidence 568999999999999765 23445444432 21 1688999999999887443
Q ss_pred ----hhccccccCCCC-----CCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 005974 562 ----LFTKFAQSRGSS-----CQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 615 (666)
Q Consensus 562 ----if~~f~~~~~~~-----~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP 615 (666)
+|.....+..-. ....-.|.|.+.|+.+-+. +.++......|-.+...+-
T Consensus 121 ~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y~q~f~ 179 (418)
T 1pvg_A 121 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKYVQKWE 179 (418)
T ss_dssp HHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEEEEEEE
T ss_pred cceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEEEEEEE
Confidence 554433322111 1112368999888776543 3444320023555555554
No 99
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=93.84 E-value=0.016 Score=55.41 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.0
Q ss_pred EEEEeecCCCCCCCChhhhh
Q 005974 544 RVQVNDSGCGVPPQDIPLLF 563 (666)
Q Consensus 544 ~i~V~D~G~Gi~~~~~~~if 563 (666)
.|+|.|||.||+.+++..-+
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 68999999999999887544
No 100
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=93.68 E-value=0.21 Score=42.49 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeeccccccCcccccCChhHHHHhcccCceEccCCCcchhhhccccc
Q 005974 194 ILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR 273 (666)
Q Consensus 194 il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~ 273 (666)
..+...+.+.+.+++ .++| .+....+++.......... -++ ......++.+++...+.+... .. .+..
T Consensus 3 ~a~~~AeiI~~~~~~-aV~I-----tD~~~ilA~~G~g~~~~~~-~~i-s~~~~~~i~~~k~~~~~~~~~---~~-~~~~ 70 (123)
T 2w1r_A 3 FAKEYADALYDSLGH-SVLI-----CDRDVYIAVSGSSKKDYLN-KSI-SEMLERTMDQRSSVLESDAKS---VQ-LVNG 70 (123)
T ss_dssp HHHHHHHHHHHHHCS-EEEE-----ECSSBEEEEESSCHHHHBT-CBB-CHHHHHHHHHCSCEEESSCEE---EE-SBTT
T ss_pred HHHHHHHHHHHHHCC-eEEE-----EcCccEEEEEecChhhcCC-Ccc-CHHHHHHHHcCCEEEEcCCcc---cc-ccCC
Confidence 356678888999999 7777 4444446666543322211 355 667888999999998865432 11 1112
Q ss_pred cCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHHHHHHH
Q 005974 274 YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVAL 339 (666)
Q Consensus 274 ~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~~a~al 339 (666)
..++..+.+.+|+. .++..+|++.+. ...+.+++.+.++.+.+|..++..+
T Consensus 71 ~~~~~~s~ii~PI~--------------~~g~viG~i~l~-~~~~~~~~~~~~la~gla~lls~Qm 121 (123)
T 2w1r_A 71 IDEDMNSYTVGPIV--------------ANGDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLARQM 121 (123)
T ss_dssp CEEEESEEEEEEEE--------------ETTEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC---
T ss_pred CCCCeeEEEEEEEE--------------ECCEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 23355778888864 344568888887 4445599999999999998887665
No 101
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=93.54 E-value=0.15 Score=52.86 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhccCC---CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh--------hh
Q 005974 493 MQTILNIVGNAVKFTKE---GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PL 561 (666)
Q Consensus 493 ~~vl~nLl~NAik~~~~---g~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~ 561 (666)
.+++.++|+||++.+-. ..|.|.+ ..++ .|+|.|||.|||.+.. +-
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i--~~dg---------------------sI~V~DnGrGIPv~~h~~~~~~~~e~ 108 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTL--YKDG---------------------SCEVSDDGRGMPVDIHPEEKIPGVEL 108 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTTCSBHHHH
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEE--eCCC---------------------eEEEEEcCCCCCcccccccCCcchhe
Confidence 77888888888876432 3344443 2222 5899999999999874 34
Q ss_pred hhccccccCCCC-----CCCCCccchHHHHHHHHHH
Q 005974 562 LFTKFAQSRGSS-----CQTPRAGLGLAICRRFVNL 592 (666)
Q Consensus 562 if~~f~~~~~~~-----~~~~g~GlGL~i~k~iv~~ 592 (666)
+|.....+..-. ....-.|.|++.+..+-+.
T Consensus 109 i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 109 ILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp HHHCC--------------------CHHHHHHTEEE
T ss_pred EEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 453322211111 0111268899888776533
No 102
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=91.94 E-value=1.8 Score=41.74 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHh----hhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEee
Q 005974 154 LKNRADELDREMG----LILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL 229 (666)
Q Consensus 154 ~~~~a~~l~~~~~----~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~ 229 (666)
++++..+|+.+.. ..+..+.....+..+...+-...+.++++......+.+.++++.+++++.+......
T Consensus 77 LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~------ 150 (252)
T 3e98_A 77 LRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV------ 150 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc------
Confidence 3444555555544 334444445667888888899999999999999999999999999999987543210
Q ss_pred ccccccCccccc--CChhHHHHhcccCceEccCCCcchhhhccccc-cCCCCceEEeecccccCCccccCCCCcCcccce
Q 005974 230 NNQIQIGSSVPI--NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 306 (666)
Q Consensus 230 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 306 (666)
....+. ....+...+..+.+..-+ ..... ....-+. ......+.-.+|| ..++ .
T Consensus 151 ------~~~~~~~~~~~~~~~~l~~~~py~G~-l~~~e-~~~lFg~~~a~~v~S~AllpL--------------~~~~-~ 207 (252)
T 3e98_A 151 ------GRSVSSAEAHQAIGGLLSGGKTVCGV-LRPHE-LAFLFGESDRDEIGSAAVVSL--------------SFQG-L 207 (252)
T ss_dssp ------SEEECHHHHHHHHHHHHTTCCCSTTC-CCHHH-HHHHCCCTTGGGCCEEEEEEE--------------ESSS-E
T ss_pred ------hhhccchhHHHHHHHHhCCCCceECC-CCchH-HHHhcCCCccccccceEEEEc--------------CCCC-c
Confidence 000000 011223333332322111 11111 0100000 1112344445554 2222 6
Q ss_pred EEEEEeeCCCCCccchh-hhHHHHHHHHHHHHHHH
Q 005974 307 VMVLMLPTDGGRKWRDH-ELELIDVVADQVAVALS 340 (666)
Q Consensus 307 ~~vl~~~~~~~~~~~~~-e~~ll~~va~~~a~al~ 340 (666)
+|++++.+..+..|++. ...+++.+|..++.++.
T Consensus 208 ~GlLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 208 HGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp EEEEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred eEEEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 88999888877777665 68889999988877663
No 103
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=87.44 E-value=0.79 Score=54.11 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhccCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCCh------
Q 005974 490 KRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------ 559 (666)
Q Consensus 490 ~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------ 559 (666)
.-|.+++.++|.||++.+-.| .|.|.+... ++ .++|.|||.|||-+..
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~-d~---------------------sisV~DnGRGIPvd~h~~~~~~ 115 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAE-EH---------------------TIEVKNDGKGIPIEIHNKENIY 115 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT-TT---------------------EEEEEECSSCCCCSBCTTTCSB
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECC-CC---------------------EEEEEecCCcccccccCCCCCE
Confidence 468999999999999864322 344444322 21 6899999999997643
Q ss_pred --hhhhccccccCCCCC-----CCCCccchHHHHHHHHH
Q 005974 560 --PLLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 591 (666)
Q Consensus 560 --~~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 591 (666)
+-+|.....+..-.+ .++-.|.|.+.|+.+-+
T Consensus 116 ~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp HHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred eeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC
Confidence 335544433222111 11236899988887643
No 104
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=75.61 E-value=1 Score=39.55 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=15.7
Q ss_pred CCCceEEecCchhhhhhhh
Q 005974 643 TGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 643 ~~~~iLvvDD~~~~r~v~~ 661 (666)
...+|||||||+..+..++
T Consensus 35 ~~~~Ilivdd~~~~~~~l~ 53 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLT 53 (157)
T ss_dssp EECEEEEECSCHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHH
Confidence 4579999999999887754
No 105
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=74.44 E-value=1.5 Score=50.21 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=59.8
Q ss_pred cccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccc-------cCCCCcCcccceEEEEEeeCCCCCccchh
Q 005974 251 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI-------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 323 (666)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-------~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 323 (666)
...+.+.+++.++.++++++...+..+....|++.|.+.+.-|. ..|.+|++|.|.+.|.+.+.++ .|++.
T Consensus 695 ~~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~~ 772 (795)
T 4a2l_A 695 SETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNPI 772 (795)
T ss_dssp GGCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCSS
T ss_pred ccccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCCC
Confidence 33567889999999999999999999999999999987765432 4689999999999999988776 67654
Q ss_pred h
Q 005974 324 E 324 (666)
Q Consensus 324 e 324 (666)
+
T Consensus 773 ~ 773 (795)
T 4a2l_A 773 P 773 (795)
T ss_dssp C
T ss_pred c
Confidence 3
No 106
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=74.01 E-value=1.6 Score=49.69 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred ccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccc--------cCCCCcCcccceEEEEEeeCCCCCccchh
Q 005974 252 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI--------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 323 (666)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~--------~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 323 (666)
..+.+.+++.++.+++.++...+..+....|++.|.+.+.-|. ..|++|++|.|.+.|.+.+.++ .|++.
T Consensus 661 ~~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~ 738 (758)
T 3ott_A 661 YTNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSNR 738 (758)
T ss_dssp GCSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCSS
T ss_pred ccccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccCc
Confidence 3467889999999999999999999999999999987655332 3589999999999999988776 67765
Q ss_pred hh
Q 005974 324 EL 325 (666)
Q Consensus 324 e~ 325 (666)
+.
T Consensus 739 ~~ 740 (758)
T 3ott_A 739 PH 740 (758)
T ss_dssp CE
T ss_pred cE
Confidence 43
No 107
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=62.70 E-value=2.1 Score=48.75 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred Cc-eEccCCCcchhhhccccccCCCCceEEeecccccCCcc-------ccCCCCcCcccceEEEEEeeCCCCCccchhh
Q 005974 254 QA-MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ-------INDWPELPAKSYAVMVLMLPTDGGRKWRDHE 324 (666)
Q Consensus 254 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e 324 (666)
+. +.+++.++.+++.++...+..+....|++.|.+.+.-| ...|.+|++|.|.+.|.+.+.++ .|++.+
T Consensus 691 ~~~i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 767 (781)
T 3v9f_A 691 EGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSEDT 767 (781)
T ss_dssp SSEEEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSCC
T ss_pred CccEEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCCc
Confidence 44 88999999999999999999999999999997765433 24689999999999999998876 676543
No 108
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=57.36 E-value=8.8 Score=40.86 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=41.9
Q ss_pred hchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccC
Q 005974 169 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 217 (666)
Q Consensus 169 ~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~ 217 (666)
+++.+..+.+..++..++++.|..+++.+...++.+.+++|+++||..+
T Consensus 313 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 313 ELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 3445556677888888999999999999999999999999999998765
No 109
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=56.87 E-value=11 Score=36.04 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=17.5
Q ss_pred CCCCCceEEecCchhhhhhhh
Q 005974 641 DLTGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 641 ~~~~~~iLvvDD~~~~r~v~~ 661 (666)
...+.+|||||||+.+|..++
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~ 146 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLA 146 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHH
Confidence 346789999999999998754
No 110
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=39.99 E-value=12 Score=36.71 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCceEEecCchhhhhhhh
Q 005974 644 GPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 644 ~~~iLvvDD~~~~r~v~~ 661 (666)
+.+||+||||+.+|.+++
T Consensus 160 ~~rILvVdD~~~~~~~l~ 177 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIE 177 (286)
T ss_dssp CCEEEEECCSHHHHHHHH
T ss_pred CCcEEEEcCCHHHHHHHH
Confidence 458999999999999864
No 111
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=33.48 E-value=61 Score=34.51 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=38.2
Q ss_pred hhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccC
Q 005974 171 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 217 (666)
Q Consensus 171 ~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~ 217 (666)
+.+..+....+...++...|..+.+.+....+.+.++++++++|.-+
T Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 328 RVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 33444556677778888889999999999999999999999998654
No 112
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=31.00 E-value=2.8e+02 Score=24.60 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEE
Q 005974 452 QIVLREVIKLIKPVASCKKLSMTL 475 (666)
Q Consensus 452 ~~ll~~~~~~~~~~~~~~~i~~~~ 475 (666)
..++.+++...-.......+.+.+
T Consensus 132 ~~il~nll~Na~k~~~~~~i~i~~ 155 (218)
T 3ehh_A 132 SMCLKEAVTNVVKHSQAKTCRVDI 155 (218)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345555555544444333344443
No 113
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=28.98 E-value=1.5e+02 Score=32.15 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=71.1
Q ss_pred eeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccC---CCcEEEEEEeecCCCCC
Q 005974 449 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLS 525 (666)
Q Consensus 449 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~---~g~v~i~~~~~~~~~~~ 525 (666)
-++-+.++.+.+.+... .+.. .. . ..... . ..+.....++.+++.||+-|.. .+.+.|.+...++
T Consensus 262 g~l~~~~~~~~~~i~~~--~~~~--~~-~-~g~~r-~-~~~~yP~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d---- 329 (583)
T 3lmm_A 262 KSCLEQLDYLEQALNVV--NKNN--TV-V-EGFVH-K-PVPEIPRLAVREAMLNAMIHRDWNRSEPIDVRWIELDS---- 329 (583)
T ss_dssp SCHHHHHHHHHHHHHHH--SCCE--EE-E-ETTEE-E-EECSSCHHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT----
T ss_pred CcHHHHHHHHHHHHHHh--cccc--ee-c-cCcee-c-ccccCCHHHHHHHHHHHHhccccCCCCCEEEEEEecCC----
Confidence 34666677766666533 2222 11 1 11111 1 1223346788999999998863 4555555431122
Q ss_pred CCCCCCCCccCCCCceEEEEEEeecCC---CCCCCChhh--------hhccccccCCCCCCCCCccchHHHHHHHHHHhC
Q 005974 526 DWRPPEFYPVSTDGHFYLRVQVNDSGC---GVPPQDIPL--------LFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMG 594 (666)
Q Consensus 526 ~~~~~~~~~~~~~~~~~l~i~V~D~G~---Gi~~~~~~~--------if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~g 594 (666)
+++|..-|. |++.+.+.. |.+-|....- ..+.|-|+.-+.+..+..|
T Consensus 330 ------------------riei~npG~l~~~~t~e~~~~~~s~RNp~la~~~~~~~~----~e~~GsGi~~i~~~~~~~g 387 (583)
T 3lmm_A 330 ------------------TLIVRSPGGFPAAITSENVLSNRAARYPALADLYRALGL----VDKQGVGVDRMYQAMIALG 387 (583)
T ss_dssp ------------------EEEEEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHTTC----SCSSHHHHHHHHHHHHHTT
T ss_pred ------------------EEEEEcCCCCCCCCCHHHhcCCCCCCCHHHHHHHHHhCc----cccCCcHHHHHHHHHHHcC
Confidence 567777774 555544321 1222222211 1356788877777777777
Q ss_pred CE-EEEEecCCCCceEEEEEEEecC
Q 005974 595 GH-IWLDSEGLDKGSTVTFLVKLGI 618 (666)
Q Consensus 595 G~-I~v~S~~~g~Gt~~~i~lP~~~ 618 (666)
.. -.++.. .|..|+++||...
T Consensus 388 ~~~P~~~~~---~~~~~~v~l~~~~ 409 (583)
T 3lmm_A 388 HRPPTIEEI---AGPFVETTLVGGR 409 (583)
T ss_dssp CCCCEEEEE---TTTEEEEEEECCS
T ss_pred CCCCeEEEc---CCCEEEEEEeCCC
Confidence 64 444443 2468888888754
No 114
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=28.97 E-value=3.5e+02 Score=24.95 Aligned_cols=139 Identities=8% Similarity=-0.040 Sum_probs=73.8
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCC---CCeEEEEEeeccccc---cCcccccCChhHHHHhcccC
Q 005974 181 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT---GLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFNSAQ 254 (666)
Q Consensus 181 lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 254 (666)
+-+.+....+.+++.... ..+.+.+|.+.+++...... .....+...+...+. ...+....||.+..+..+..
T Consensus 8 ~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~~ 86 (237)
T 3szt_A 8 YLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYT 86 (237)
T ss_dssp HHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSCS
T ss_pred HHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCCC
Confidence 344466666666666555 88889999999998654321 122333334433321 12234456888888888888
Q ss_pred ceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEeeCCCCCccchhhhHHHHHHHHH
Q 005974 255 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 334 (666)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~va~~ 334 (666)
+....+......-.+.......+....+.+|+...++ ..+++.+..+. ..++..++..+......
T Consensus 87 p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~g--------------~~g~ls~~~~~-~~~~~~~~~~~~~~~~~ 151 (237)
T 3szt_A 87 PLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYG--------------LISMLSLVRSS-ESIAATEILEKESFLLW 151 (237)
T ss_dssp CEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEECGGG--------------CEEEEEEEESS-SCCCHHHHHHHHHHHHH
T ss_pred CEEeCCCCcccHHHHHHHHHHcCCCCEEEEEeeCCCC--------------CeEEEEEecCC-CcCCHHHHHHHHHHHHH
Confidence 8877654322111111222234445666677543222 23444444333 24666666555433333
Q ss_pred H
Q 005974 335 V 335 (666)
Q Consensus 335 ~ 335 (666)
+
T Consensus 152 l 152 (237)
T 3szt_A 152 I 152 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 115
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=27.56 E-value=3.4e+02 Score=24.40 Aligned_cols=55 Identities=25% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHhhcCCCchhH-HHHHHHHHHHHhhhhHHhHhhhcc
Q 005974 51 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRW-VLMQFGSFIILCGLTHFISLWTFT 109 (666)
Q Consensus 51 ~~~~~sd~~ia~ay~~ip~~l~~f~~~~~~~~~~~-~~~~f~~fi~~cg~~h~~~i~~~~ 109 (666)
.+|.+.|.+++.+.. +++ ++|.++++.....+ +++.+.+. ++....|.+.=+.+|
T Consensus 88 p~q~lldy~laf~~~--Gla-G~f~~~~~~~~~~~~~lg~~ig~-~~r~~~~~isgvvff 143 (192)
T 3rlb_A 88 LSQAFLEYLVAPVSL--GIA-GLFRQKTAPLKLAPVLLGTFVAV-LLKYFFHFIAGIIFW 143 (192)
T ss_dssp HHHHHHHHTHHHHHG--GGG-GGGCCCSSSCCHHHHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHH--HHH-HhheeccccccHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 458889988855544 444 66665544332232 33333332 366777887755655
No 116
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=25.54 E-value=4e+02 Score=24.49 Aligned_cols=31 Identities=3% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005974 404 TDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 434 (666)
Q Consensus 404 ~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 434 (666)
+..+++..++++.+.++++.+...+..+.++
T Consensus 123 ~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~ 153 (227)
T 3l39_A 123 RPISESGKELSRLIHEEAINIGKAMDELETF 153 (227)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888877766443
No 117
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=23.96 E-value=32 Score=32.77 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.8
Q ss_pred CCCceEEecCchhhhhhhh
Q 005974 643 TGPKPLFRDNDQIASTKSR 661 (666)
Q Consensus 643 ~~~~iLvvDD~~~~r~v~~ 661 (666)
.+.+||||||++.+|..++
T Consensus 123 ~~~~ILivDD~~~~~~~l~ 141 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTM 141 (259)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHH
Confidence 4579999999999988753
No 118
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=23.48 E-value=4.4e+02 Score=26.52 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=11.3
Q ss_pred hhhHHHHHHHhhHHHHHHHH
Q 005974 55 ISDILIALAYFSIPVELIYF 74 (666)
Q Consensus 55 ~sd~~ia~ay~~ip~~l~~f 74 (666)
+-..+..+..|.+|+.+..+
T Consensus 180 ~~~~~~~~~~~~~p~~ii~~ 199 (464)
T 4dkl_A 180 LLKICVFIFAFIMPVLIITV 199 (464)
T ss_dssp HHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555667777665543
No 119
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=23.37 E-value=5.8e+02 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhhHHhHh
Q 005974 86 VLMQFGSFIILCGLTHFISL 105 (666)
Q Consensus 86 ~~~~f~~fi~~cg~~h~~~i 105 (666)
++...+.| ++|-++..+..
T Consensus 390 l~~iv~~F-~icw~P~~i~~ 408 (467)
T 3uon_A 390 ILAILLAF-IITWAPYNVMV 408 (467)
T ss_dssp HHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhHHHHHH
Confidence 33334444 46666665443
Done!