Query 005975
Match_columns 666
No_of_seqs 267 out of 644
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 16:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0212 Uncharacterized conser 100.0 1E-154 3E-159 1238.4 53.8 574 21-619 73-653 (675)
2 PF11916 Vac14_Fig4_bd: Vacuol 100.0 7.4E-78 1.6E-82 577.6 20.1 182 368-550 1-182 (182)
3 KOG2023 Nuclear transport rece 100.0 3.2E-37 7E-42 336.9 23.9 345 28-375 86-495 (885)
4 KOG0212 Uncharacterized conser 100.0 2.1E-32 4.5E-37 295.7 37.2 470 35-526 3-508 (675)
5 PF12755 Vac14_Fab1_bd: Vacuol 99.9 1.4E-22 2.9E-27 179.5 9.6 83 20-102 15-97 (97)
6 KOG2171 Karyopherin (importin) 99.8 3.6E-16 7.8E-21 182.5 40.3 414 27-484 74-571 (1075)
7 KOG0915 Uncharacterized conser 99.7 6.4E-15 1.4E-19 174.4 33.2 312 5-365 977-1324(1702)
8 KOG2171 Karyopherin (importin) 99.7 1.2E-13 2.6E-18 161.7 38.8 364 2-366 347-786 (1075)
9 KOG1242 Protein containing ada 99.7 3.4E-14 7.3E-19 157.9 27.2 351 32-400 174-548 (569)
10 KOG2023 Nuclear transport rece 99.6 2.8E-13 6E-18 150.2 31.4 347 24-374 248-765 (885)
11 KOG1242 Protein containing ada 99.6 7.3E-15 1.6E-19 163.2 18.8 320 6-342 196-557 (569)
12 PRK09687 putative lyase; Provi 99.5 7.6E-12 1.6E-16 131.7 25.8 260 26-346 17-279 (280)
13 KOG0915 Uncharacterized conser 99.5 2.4E-11 5.2E-16 144.7 30.2 367 18-389 1025-1431(1702)
14 KOG1241 Karyopherin (importin) 99.5 6.4E-12 1.4E-16 141.6 22.2 332 30-368 88-461 (859)
15 PRK13800 putative oxidoreducta 99.4 1.4E-11 3.1E-16 148.7 25.7 244 33-348 622-866 (897)
16 KOG1824 TATA-binding protein-i 99.4 8.9E-11 1.9E-15 134.5 25.5 281 43-361 901-1203(1233)
17 PF01602 Adaptin_N: Adaptin N 99.4 3.3E-10 7.1E-15 128.5 30.0 311 26-365 108-423 (526)
18 PF01602 Adaptin_N: Adaptin N 99.3 5.5E-10 1.2E-14 126.6 29.6 341 30-402 40-388 (526)
19 PRK13800 putative oxidoreducta 99.3 4E-10 8.7E-15 136.3 26.9 246 30-346 650-896 (897)
20 PF12755 Vac14_Fab1_bd: Vacuol 99.3 7.5E-12 1.6E-16 111.1 8.3 95 88-184 1-96 (97)
21 PRK09687 putative lyase; Provi 99.3 1.3E-09 2.8E-14 114.9 23.8 238 75-366 25-265 (280)
22 KOG1824 TATA-binding protein-i 99.2 3.5E-08 7.5E-13 113.8 34.3 391 28-424 170-725 (1233)
23 KOG1241 Karyopherin (importin) 99.2 1E-07 2.2E-12 108.4 34.7 292 112-420 362-732 (859)
24 KOG0213 Splicing factor 3b, su 99.2 2E-08 4.2E-13 113.2 28.7 372 22-400 543-969 (1172)
25 PLN03200 cellulose synthase-in 99.1 6.2E-08 1.3E-12 122.1 31.7 349 37-393 409-772 (2102)
26 PF12348 CLASP_N: CLASP N term 99.1 6.1E-09 1.3E-13 105.7 18.6 191 112-349 5-206 (228)
27 PF12348 CLASP_N: CLASP N term 99.1 4E-09 8.7E-14 107.1 17.2 197 32-270 3-210 (228)
28 PTZ00429 beta-adaptin; Provisi 99.1 1.2E-06 2.5E-11 103.4 39.7 391 1-424 1-400 (746)
29 KOG0166 Karyopherin (importin) 99.0 3.5E-08 7.6E-13 109.9 24.0 353 32-483 109-487 (514)
30 PLN03200 cellulose synthase-in 99.0 5.5E-08 1.2E-12 122.6 26.5 349 31-389 487-864 (2102)
31 PTZ00429 beta-adaptin; Provisi 99.0 1.5E-06 3.1E-11 102.6 36.7 340 31-401 67-415 (746)
32 COG5215 KAP95 Karyopherin (imp 99.0 3.1E-06 6.8E-11 93.8 34.6 328 30-368 92-463 (858)
33 KOG0213 Splicing factor 3b, su 99.0 4.4E-07 9.5E-12 102.6 28.4 394 21-434 430-925 (1172)
34 PF10508 Proteasom_PSMB: Prote 98.9 3.6E-06 7.8E-11 95.9 34.5 259 78-349 43-319 (503)
35 PF12460 MMS19_C: RNAPII trans 98.9 2.5E-06 5.4E-11 94.9 30.1 328 29-363 35-413 (415)
36 COG5181 HSH155 U2 snRNP splice 98.9 1.8E-07 3.9E-12 104.0 20.3 369 22-400 348-774 (975)
37 PF10508 Proteasom_PSMB: Prote 98.8 9.1E-07 2E-11 100.7 26.1 330 30-370 75-447 (503)
38 COG5215 KAP95 Karyopherin (imp 98.8 1.9E-05 4.1E-10 87.7 33.1 340 27-368 216-692 (858)
39 KOG0211 Protein phosphatase 2A 98.8 7.6E-07 1.6E-11 104.3 23.1 298 7-316 331-672 (759)
40 KOG0211 Protein phosphatase 2A 98.8 1.4E-05 2.9E-10 94.0 33.2 429 34-497 238-683 (759)
41 KOG4224 Armadillo repeat prote 98.5 8.5E-06 1.8E-10 86.4 18.4 357 30-399 83-486 (550)
42 COG5181 HSH155 U2 snRNP splice 98.5 0.00013 2.7E-09 81.9 28.3 301 31-348 520-869 (975)
43 COG1413 FOG: HEAT repeat [Ener 98.4 0.0001 2.2E-09 79.2 25.8 248 32-349 43-304 (335)
44 TIGR02270 conserved hypothetic 98.4 5.2E-05 1.1E-09 84.1 23.0 242 31-349 53-296 (410)
45 KOG1943 Beta-tubulin folding c 98.3 0.0017 3.6E-08 77.4 33.7 466 22-501 331-900 (1133)
46 KOG2259 Uncharacterized conser 98.3 0.00011 2.3E-09 83.2 22.0 270 73-365 198-492 (823)
47 KOG1967 DNA repair/transcripti 98.3 1.4E-05 3.1E-10 92.9 15.5 192 72-264 814-1022(1030)
48 KOG4224 Armadillo repeat prote 98.3 7.5E-05 1.6E-09 79.4 19.6 224 34-266 210-446 (550)
49 KOG0166 Karyopherin (importin) 98.2 7.5E-05 1.6E-09 83.8 20.1 307 32-348 152-485 (514)
50 KOG1248 Uncharacterized conser 98.2 0.0019 4.2E-08 77.6 32.4 361 30-392 516-905 (1176)
51 KOG1248 Uncharacterized conser 98.2 0.0018 3.8E-08 77.9 31.6 282 72-363 611-914 (1176)
52 KOG1060 Vesicle coat complex A 98.0 0.0013 2.8E-08 76.0 25.0 312 34-368 145-553 (968)
53 KOG1240 Protein kinase contain 98.0 0.0014 3.1E-08 78.5 25.9 253 27-311 457-728 (1431)
54 KOG1062 Vesicle coat complex A 98.0 0.00088 1.9E-08 77.5 23.2 281 22-322 131-428 (866)
55 KOG1058 Vesicle coat complex C 98.0 0.002 4.4E-08 74.1 25.7 331 5-381 108-458 (948)
56 KOG1062 Vesicle coat complex A 97.9 0.0027 5.8E-08 73.7 25.2 85 279-368 313-397 (866)
57 KOG1059 Vesicle coat complex A 97.9 0.04 8.6E-07 63.7 33.9 204 32-251 144-385 (877)
58 KOG1943 Beta-tubulin folding c 97.9 0.0091 2E-07 71.4 28.9 403 21-435 409-897 (1133)
59 PF12717 Cnd1: non-SMC mitotic 97.9 0.00082 1.8E-08 66.2 17.5 167 168-344 1-174 (178)
60 KOG1061 Vesicle coat complex A 97.9 0.0029 6.3E-08 73.3 24.1 397 32-456 13-420 (734)
61 cd00020 ARM Armadillo/beta-cat 97.9 5.9E-05 1.3E-09 67.4 8.5 111 32-142 7-119 (120)
62 KOG1240 Protein kinase contain 97.8 0.0028 6E-08 76.2 23.8 335 111-471 419-793 (1431)
63 KOG1820 Microtubule-associated 97.8 0.0007 1.5E-08 80.4 19.0 196 28-270 249-447 (815)
64 PF12460 MMS19_C: RNAPII trans 97.8 0.019 4.2E-07 64.0 29.4 213 111-328 186-414 (415)
65 COG5096 Vesicle coat complex, 97.8 0.045 9.8E-07 64.6 32.3 279 41-346 28-309 (757)
66 KOG1060 Vesicle coat complex A 97.8 0.03 6.4E-07 65.2 29.3 324 52-402 52-477 (968)
67 COG1413 FOG: HEAT repeat [Ener 97.7 0.0096 2.1E-07 64.0 24.3 246 30-345 72-331 (335)
68 KOG2274 Predicted importin 9 [ 97.7 0.02 4.4E-07 67.4 27.6 303 18-365 476-794 (1005)
69 PF13513 HEAT_EZ: HEAT-like re 97.7 6.7E-05 1.4E-09 59.1 5.4 55 293-347 1-55 (55)
70 KOG1061 Vesicle coat complex A 97.7 0.0075 1.6E-07 70.0 22.9 104 277-384 421-527 (734)
71 KOG2259 Uncharacterized conser 97.6 0.0044 9.6E-08 70.6 20.3 212 35-261 201-470 (823)
72 cd00020 ARM Armadillo/beta-cat 97.6 0.00034 7.4E-09 62.4 9.3 110 74-183 8-119 (120)
73 COG5064 SRP1 Karyopherin (impo 97.6 0.00063 1.4E-08 72.1 11.6 222 33-264 158-396 (526)
74 KOG1020 Sister chromatid cohes 97.5 0.53 1.1E-05 58.7 37.1 280 211-523 791-1086(1692)
75 PF12717 Cnd1: non-SMC mitotic 97.5 0.0011 2.4E-08 65.3 11.9 92 86-185 1-93 (178)
76 KOG2025 Chromosome condensatio 97.5 0.077 1.7E-06 61.3 27.1 172 70-261 82-254 (892)
77 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00032 6.9E-09 55.2 5.5 55 128-182 1-55 (55)
78 PF13646 HEAT_2: HEAT repeats; 97.4 0.00076 1.6E-08 57.6 8.2 84 34-138 1-87 (88)
79 TIGR02270 conserved hypothetic 97.4 0.0074 1.6E-07 67.2 18.0 187 33-265 87-295 (410)
80 KOG1991 Nuclear transport rece 97.4 0.61 1.3E-05 56.0 37.2 239 3-247 319-599 (1010)
81 PF05804 KAP: Kinesin-associat 97.3 0.1 2.2E-06 61.8 27.5 329 32-369 250-633 (708)
82 PF02985 HEAT: HEAT repeat; I 97.3 0.00025 5.5E-09 49.5 3.7 30 33-62 1-30 (31)
83 KOG1967 DNA repair/transcripti 97.3 0.0018 3.9E-08 76.0 12.2 149 27-178 862-1018(1030)
84 KOG2956 CLIP-associating prote 97.3 0.0099 2.2E-07 65.6 17.1 154 27-187 324-480 (516)
85 PF13646 HEAT_2: HEAT repeats; 97.3 0.0017 3.8E-08 55.3 9.2 85 116-220 1-87 (88)
86 KOG1059 Vesicle coat complex A 97.3 0.051 1.1E-06 62.8 23.1 229 114-366 144-381 (877)
87 KOG2274 Predicted importin 9 [ 97.3 0.72 1.6E-05 55.0 36.0 227 228-457 521-813 (1005)
88 COG5096 Vesicle coat complex, 97.3 0.45 9.8E-06 56.5 31.2 147 21-185 48-196 (757)
89 KOG1820 Microtubule-associated 97.2 0.016 3.5E-07 69.1 19.3 198 112-315 251-450 (815)
90 PF05918 API5: Apoptosis inhib 97.2 0.13 2.8E-06 59.1 25.1 288 74-389 24-349 (556)
91 COG5240 SEC21 Vesicle coat com 97.1 0.35 7.5E-06 55.0 27.2 372 32-428 65-449 (898)
92 KOG2032 Uncharacterized conser 97.1 0.075 1.6E-06 59.3 21.5 149 150-298 253-406 (533)
93 PF08623 TIP120: TATA-binding 97.1 0.006 1.3E-07 59.6 11.5 127 231-361 3-166 (169)
94 PF10521 DUF2454: Protein of u 97.0 0.012 2.7E-07 62.2 14.4 144 25-168 112-278 (282)
95 PLN03076 ARF guanine nucleotid 97.0 0.43 9.4E-06 61.8 30.2 315 49-368 1109-1514(1780)
96 PF04118 Dopey_N: Dopey, N-ter 97.0 0.031 6.7E-07 59.9 16.9 209 89-346 22-251 (307)
97 KOG1020 Sister chromatid cohes 96.9 0.27 5.8E-06 61.2 25.8 157 16-182 798-958 (1692)
98 KOG2025 Chromosome condensatio 96.7 0.18 3.9E-06 58.4 21.2 172 29-221 82-260 (892)
99 PF05918 API5: Apoptosis inhib 96.7 0.1 2.3E-06 59.9 19.2 149 167-332 34-190 (556)
100 KOG1058 Vesicle coat complex C 96.7 0.28 6.1E-06 57.2 22.1 310 74-417 100-428 (948)
101 PF08167 RIX1: rRNA processing 96.6 0.052 1.1E-06 52.9 14.3 134 111-246 22-164 (165)
102 PF05004 IFRD: Interferon-rela 96.6 0.44 9.5E-06 51.3 22.4 218 31-249 42-285 (309)
103 PF04826 Arm_2: Armadillo-like 96.6 0.083 1.8E-06 55.2 16.0 177 32-216 54-253 (254)
104 PF05004 IFRD: Interferon-rela 96.5 0.33 7.2E-06 52.2 20.7 212 75-289 45-283 (309)
105 KOG2032 Uncharacterized conser 96.5 0.39 8.5E-06 53.8 21.1 262 29-309 255-532 (533)
106 KOG1993 Nuclear transport rece 96.5 0.8 1.7E-05 53.9 24.2 273 72-354 525-818 (978)
107 KOG1992 Nuclear export recepto 96.5 0.23 5E-06 58.4 20.0 279 43-326 374-686 (960)
108 PF05536 Neurochondrin: Neuroc 96.3 3 6.5E-05 48.4 28.6 231 33-269 6-264 (543)
109 PF04826 Arm_2: Armadillo-like 96.3 0.1 2.2E-06 54.6 15.0 183 34-226 14-206 (254)
110 COG5240 SEC21 Vesicle coat com 96.3 0.99 2.1E-05 51.5 23.1 307 39-368 144-478 (898)
111 PF02985 HEAT: HEAT repeat; I 96.3 0.0067 1.5E-07 42.2 4.1 29 156-184 1-29 (31)
112 KOG2956 CLIP-associating prote 96.2 0.37 7.9E-06 53.7 19.0 188 151-348 283-476 (516)
113 PF05804 KAP: Kinesin-associat 96.1 1.2 2.5E-05 53.1 23.7 137 30-172 288-429 (708)
114 KOG4653 Uncharacterized conser 96.1 0.47 1E-05 56.2 19.7 228 34-269 729-967 (982)
115 KOG1525 Sister chromatid cohes 96.1 2.3 4.9E-05 53.5 26.8 345 27-389 47-454 (1266)
116 PLN03076 ARF guanine nucleotid 96.0 0.77 1.7E-05 59.6 23.1 260 30-289 1180-1512(1780)
117 KOG0168 Putative ubiquitin fus 96.0 1.6 3.6E-05 51.8 23.5 253 198-460 169-442 (1051)
118 KOG0392 SNF2 family DNA-depend 96.0 0.089 1.9E-06 64.1 13.8 174 49-269 750-928 (1549)
119 COG5218 YCG1 Chromosome conden 95.9 0.51 1.1E-05 53.8 18.6 211 30-260 47-260 (885)
120 COG5064 SRP1 Karyopherin (impo 95.9 0.072 1.6E-06 56.9 11.4 229 116-349 159-398 (526)
121 KOG4653 Uncharacterized conser 95.9 0.53 1.1E-05 55.8 19.0 217 124-348 737-963 (982)
122 KOG0889 Histone acetyltransfer 95.8 3 6.6E-05 56.3 27.4 260 113-372 1032-1334(3550)
123 KOG0414 Chromosome condensatio 95.8 0.28 6E-06 59.8 17.0 165 194-371 917-1107(1251)
124 PF13251 DUF4042: Domain of un 95.7 0.13 2.9E-06 51.0 11.9 139 47-185 1-175 (182)
125 KOG1078 Vesicle coat complex C 95.7 2.5 5.4E-05 49.9 23.4 179 195-384 244-531 (865)
126 PF08506 Cse1: Cse1; InterPro 95.6 2.3 5.1E-05 46.9 22.5 210 128-342 110-368 (370)
127 PF10274 ParcG: Parkin co-regu 95.6 0.17 3.8E-06 50.1 12.2 77 272-348 31-108 (183)
128 KOG0392 SNF2 family DNA-depend 95.6 0.082 1.8E-06 64.4 11.5 153 30-225 814-992 (1549)
129 PF14500 MMS19_N: Dos2-interac 95.6 1.5 3.2E-05 46.2 19.7 202 38-242 5-255 (262)
130 PF10521 DUF2454: Protein of u 95.6 1.2 2.5E-05 47.3 19.2 168 130-333 95-278 (282)
131 KOG0889 Histone acetyltransfer 95.5 9.8 0.00021 51.9 30.1 434 29-490 1030-1529(3550)
132 KOG4413 26S proteasome regulat 95.3 1.1 2.4E-05 48.0 17.3 182 160-348 48-242 (524)
133 PF14500 MMS19_N: Dos2-interac 95.2 4.7 0.0001 42.4 22.1 240 78-325 4-255 (262)
134 PF12719 Cnd3: Nuclear condens 95.2 4.5 9.7E-05 43.1 22.3 130 152-290 23-163 (298)
135 KOG1293 Proteins containing ar 95.1 8.9 0.00019 44.7 25.5 100 249-348 389-489 (678)
136 KOG0414 Chromosome condensatio 95.0 13 0.00028 46.0 37.0 410 27-454 264-755 (1251)
137 PF08623 TIP120: TATA-binding 94.8 0.11 2.5E-06 50.8 8.0 95 150-247 4-116 (169)
138 PF12231 Rif1_N: Rap1-interact 94.7 8.4 0.00018 42.5 26.1 226 155-387 90-351 (372)
139 KOG1993 Nuclear transport rece 94.7 13 0.00028 44.4 26.8 122 226-350 560-689 (978)
140 KOG4524 Uncharacterized conser 94.6 9.3 0.0002 46.4 24.4 76 279-354 803-881 (1014)
141 PF13251 DUF4042: Domain of un 94.6 0.22 4.8E-06 49.5 9.7 139 129-267 1-175 (182)
142 KOG2021 Nuclear mRNA export fa 94.5 13 0.00029 44.0 32.2 37 312-348 327-363 (980)
143 COG5218 YCG1 Chromosome conden 94.5 12 0.00025 43.3 26.3 142 27-188 86-229 (885)
144 PF12719 Cnd3: Nuclear condens 94.5 0.53 1.2E-05 50.2 13.0 145 216-365 3-161 (298)
145 KOG1293 Proteins containing ar 94.5 1.4 3E-05 51.0 16.6 166 30-205 374-546 (678)
146 KOG2021 Nuclear mRNA export fa 94.4 14 0.00031 43.8 32.4 349 39-400 93-585 (980)
147 PF08167 RIX1: rRNA processing 94.4 0.76 1.6E-05 44.8 12.8 135 193-329 22-164 (165)
148 COG5656 SXM1 Importin, protein 94.4 14 0.00031 43.7 33.5 378 32-435 460-887 (970)
149 KOG1991 Nuclear transport rece 94.1 19 0.00041 43.9 29.8 349 18-375 488-881 (1010)
150 PF10274 ParcG: Parkin co-regu 94.1 0.41 8.9E-06 47.5 10.1 112 236-349 37-167 (183)
151 PF03224 V-ATPase_H_N: V-ATPas 94.0 0.5 1.1E-05 50.6 11.6 152 197-351 106-271 (312)
152 KOG0567 HEAT repeat-containing 93.9 2.5 5.4E-05 44.2 15.6 95 195-310 186-282 (289)
153 PF13001 Ecm29: Proteasome sta 93.9 15 0.00034 42.1 29.1 348 23-435 14-436 (501)
154 PF08389 Xpo1: Exportin 1-like 93.6 0.54 1.2E-05 43.8 9.7 127 47-179 3-148 (148)
155 KOG2160 Armadillo/beta-catenin 93.5 5.6 0.00012 43.2 18.3 184 2-188 54-244 (342)
156 KOG2160 Armadillo/beta-catenin 93.5 5.6 0.00012 43.2 18.2 140 206-349 93-240 (342)
157 PF12830 Nipped-B_C: Sister ch 93.5 2.2 4.7E-05 42.5 14.3 61 26-94 6-66 (187)
158 KOG2973 Uncharacterized conser 93.5 11 0.00024 40.4 19.8 62 119-182 8-69 (353)
159 KOG1078 Vesicle coat complex C 93.4 8.2 0.00018 45.8 20.3 274 21-340 234-559 (865)
160 KOG0413 Uncharacterized conser 93.3 8.4 0.00018 46.7 20.4 67 279-349 968-1035(1529)
161 KOG2149 Uncharacterized conser 93.3 1 2.3E-05 49.4 12.5 130 35-164 61-191 (393)
162 KOG1243 Protein kinase [Genera 92.9 1.3 2.8E-05 51.7 13.1 139 202-349 260-398 (690)
163 cd00256 VATPase_H VATPase_H, r 92.9 20 0.00043 40.5 24.2 272 74-348 102-424 (429)
164 PF08767 CRM1_C: CRM1 C termin 92.8 12 0.00026 40.4 19.9 199 233-435 67-309 (319)
165 PF11865 DUF3385: Domain of un 92.6 0.99 2.1E-05 43.9 10.2 116 152-267 7-158 (160)
166 KOG2933 Uncharacterized conser 92.6 2.4 5.2E-05 45.2 13.6 123 278-400 87-214 (334)
167 COG5098 Chromosome condensatio 92.3 1.5 3.2E-05 51.1 12.3 142 195-349 891-1037(1128)
168 KOG1992 Nuclear export recepto 92.3 32 0.00069 41.4 35.9 315 26-348 82-526 (960)
169 PF01347 Vitellogenin_N: Lipop 92.2 4.1 9E-05 47.7 16.7 148 167-341 447-614 (618)
170 KOG4535 HEAT and armadillo rep 92.1 15 0.00031 41.7 19.2 305 41-348 5-461 (728)
171 PF14664 RICTOR_N: Rapamycin-i 92.0 23 0.00049 39.2 23.0 231 109-348 20-268 (371)
172 KOG2149 Uncharacterized conser 91.7 1.6 3.4E-05 48.1 11.3 127 199-325 61-187 (393)
173 PF08767 CRM1_C: CRM1 C termin 91.7 22 0.00049 38.4 24.0 156 112-268 65-246 (319)
174 PF10363 DUF2435: Protein of u 91.7 1.3 2.8E-05 39.1 8.8 85 73-167 3-89 (92)
175 KOG0413 Uncharacterized conser 91.6 4.1 8.8E-05 49.2 15.1 89 111-204 1003-1091(1529)
176 KOG1077 Vesicle coat complex A 91.5 36 0.00077 40.4 28.7 227 109-348 324-586 (938)
177 COG5098 Chromosome condensatio 91.4 7.6 0.00016 45.6 16.5 104 80-184 306-415 (1128)
178 KOG2062 26S proteasome regulat 91.3 3 6.5E-05 49.0 13.4 117 123-253 564-681 (929)
179 cd00256 VATPase_H VATPase_H, r 91.2 21 0.00045 40.3 19.8 147 32-184 101-258 (429)
180 PF13001 Ecm29: Proteasome sta 91.2 2.5 5.3E-05 48.6 12.9 162 28-223 315-486 (501)
181 PF03378 CAS_CSE1: CAS/CSE pro 91.0 32 0.00069 38.9 21.8 301 26-332 20-351 (435)
182 KOG2933 Uncharacterized conser 91.0 3.8 8.3E-05 43.8 12.9 148 27-182 124-275 (334)
183 PF04118 Dopey_N: Dopey, N-ter 91.0 26 0.00056 37.8 21.3 177 73-257 54-245 (307)
184 cd08050 TAF6 TATA Binding Prot 90.7 4.1 9E-05 44.5 13.6 144 65-221 174-336 (343)
185 KOG0891 DNA-dependent protein 90.6 68 0.0015 43.5 26.2 156 33-188 6-208 (2341)
186 cd08050 TAF6 TATA Binding Prot 90.5 5.6 0.00012 43.5 14.3 146 147-306 174-338 (343)
187 PF03224 V-ATPase_H_N: V-ATPas 90.5 6.4 0.00014 42.2 14.6 186 200-389 62-273 (312)
188 KOG0168 Putative ubiquitin fus 90.3 13 0.00028 44.6 17.4 202 117-318 170-423 (1051)
189 PF03378 CAS_CSE1: CAS/CSE pro 90.1 25 0.00055 39.7 19.5 221 144-369 15-255 (435)
190 cd03561 VHS VHS domain family; 90.0 5.9 0.00013 37.1 12.3 74 116-189 39-117 (133)
191 PF11864 DUF3384: Domain of un 90.0 40 0.00086 38.4 24.9 142 70-224 173-329 (464)
192 KOG0803 Predicted E3 ubiquitin 89.8 12 0.00026 47.4 17.9 215 120-334 47-289 (1312)
193 COG5116 RPN2 26S proteasome re 89.8 6.3 0.00014 45.2 14.0 161 72-252 514-677 (926)
194 PF11865 DUF3385: Domain of un 89.8 2 4.3E-05 41.7 9.1 113 235-347 8-155 (160)
195 KOG2081 Nuclear transport regu 89.7 45 0.00097 38.5 34.1 326 33-385 63-495 (559)
196 PF10363 DUF2435: Protein of u 89.3 1.5 3.4E-05 38.6 7.2 72 157-229 5-76 (92)
197 KOG1949 Uncharacterized conser 89.3 12 0.00025 44.1 15.8 194 199-398 177-384 (1005)
198 KOG1243 Protein kinase [Genera 89.2 1.5 3.2E-05 51.2 8.9 36 235-270 484-519 (690)
199 PF14663 RasGEF_N_2: Rapamycin 89.2 3.6 7.7E-05 37.8 9.9 97 320-422 8-111 (115)
200 KOG1077 Vesicle coat complex A 89.1 56 0.0012 38.8 34.0 391 27-466 106-543 (938)
201 KOG2062 26S proteasome regulat 88.8 2.8 6E-05 49.3 10.6 148 20-173 505-683 (929)
202 KOG2085 Serine/threonine prote 88.8 44 0.00095 37.3 19.1 253 69-368 147-430 (457)
203 KOG1517 Guanine nucleotide bin 88.6 7.3 0.00016 47.6 14.0 106 119-224 604-731 (1387)
204 KOG1517 Guanine nucleotide bin 88.0 15 0.00032 45.1 16.0 226 115-375 513-756 (1387)
205 KOG4413 26S proteasome regulat 88.0 44 0.00096 36.3 24.5 234 31-264 81-331 (524)
206 PF08569 Mo25: Mo25-like; Int 87.8 46 0.001 36.3 28.3 226 113-385 75-332 (335)
207 PF01347 Vitellogenin_N: Lipop 87.6 64 0.0014 37.8 21.5 168 236-416 430-617 (618)
208 PF08569 Mo25: Mo25-like; Int 87.6 48 0.001 36.2 22.1 193 29-228 73-286 (335)
209 KOG1877 Putative transmembrane 86.3 34 0.00073 41.4 17.8 195 134-328 76-307 (819)
210 KOG0946 ER-Golgi vesicle-tethe 86.2 86 0.0019 37.8 27.6 307 34-343 168-551 (970)
211 cd03567 VHS_GGA VHS domain fam 86.2 16 0.00034 34.8 12.5 74 117-190 41-122 (139)
212 KOG1949 Uncharacterized conser 86.1 6.6 0.00014 46.1 11.4 150 30-181 171-328 (1005)
213 PF08506 Cse1: Cse1; InterPro 85.5 14 0.00031 40.8 13.6 130 46-179 225-370 (370)
214 COG5116 RPN2 26S proteasome re 85.3 13 0.00028 42.8 13.0 170 20-210 502-676 (926)
215 KOG2011 Sister chromatid cohes 85.2 1.1E+02 0.0024 38.2 22.7 129 289-422 297-436 (1048)
216 KOG1822 Uncharacterized conser 85.2 1.4E+02 0.0031 39.4 23.1 236 36-300 880-1119(2067)
217 PF00514 Arm: Armadillo/beta-c 85.2 1.5 3.2E-05 32.1 4.1 29 320-348 12-40 (41)
218 PF08064 UME: UME (NUC010) dom 85.0 3 6.6E-05 37.7 6.8 62 207-270 26-87 (107)
219 PF05536 Neurochondrin: Neuroc 84.8 86 0.0019 36.6 23.7 159 29-187 95-264 (543)
220 KOG2153 Protein involved in th 84.8 39 0.00086 39.6 16.8 228 132-389 303-574 (704)
221 PF00514 Arm: Armadillo/beta-c 84.5 1.6 3.5E-05 32.0 4.0 29 32-60 12-40 (41)
222 cd03568 VHS_STAM VHS domain fa 84.5 12 0.00026 35.7 11.0 77 114-190 37-116 (144)
223 KOG2549 Transcription initiati 84.3 50 0.0011 38.1 17.1 147 66-225 204-370 (576)
224 PF08064 UME: UME (NUC010) dom 84.0 11 0.00024 34.0 10.0 57 291-349 27-83 (107)
225 PF12530 DUF3730: Protein of u 83.8 56 0.0012 33.6 22.3 204 116-336 2-219 (234)
226 KOG0891 DNA-dependent protein 82.9 1.1E+02 0.0024 41.6 21.8 115 149-270 94-208 (2341)
227 COG5537 IRR1 Cohesin [Cell div 82.9 96 0.0021 36.3 18.6 214 7-260 188-416 (740)
228 KOG3961 Uncharacterized conser 82.0 3.8 8.2E-05 41.6 6.5 92 147-242 110-204 (262)
229 smart00185 ARM Armadillo/beta- 81.7 1.9 4.1E-05 30.9 3.3 28 33-60 13-40 (41)
230 smart00638 LPD_N Lipoprotein N 81.5 85 0.0018 36.5 18.7 122 209-346 410-542 (574)
231 PF12830 Nipped-B_C: Sister ch 81.4 43 0.00093 33.2 14.0 76 236-316 7-82 (187)
232 KOG4524 Uncharacterized conser 81.3 1.2E+02 0.0026 37.3 19.5 248 135-389 569-880 (1014)
233 PF12074 DUF3554: Domain of un 81.3 39 0.00085 36.5 14.9 154 30-184 59-235 (339)
234 KOG2137 Protein kinase [Signal 81.1 66 0.0014 38.2 17.0 200 137-348 275-495 (700)
235 smart00288 VHS Domain present 80.9 23 0.00051 33.1 11.3 75 116-190 39-117 (133)
236 cd03572 ENTH_epsin_related ENT 80.8 4.2 9E-05 37.9 6.0 74 192-265 34-118 (122)
237 KOG1837 Uncharacterized conser 80.8 36 0.00079 43.6 15.5 69 115-183 1539-1610(1621)
238 KOG2549 Transcription initiati 80.8 22 0.00047 40.9 12.7 141 148-333 204-352 (576)
239 PF08161 NUC173: NUC173 domain 80.5 32 0.0007 34.6 12.8 43 63-105 31-74 (198)
240 KOG0567 HEAT repeat-containing 79.9 86 0.0019 33.2 24.0 193 113-348 66-279 (289)
241 smart00145 PI3Ka Phosphoinosit 79.6 6.9 0.00015 39.0 7.6 77 71-160 42-119 (184)
242 COG5095 TAF6 Transcription ini 78.9 53 0.0011 35.3 13.9 148 65-221 193-355 (450)
243 KOG0946 ER-Golgi vesicle-tethe 78.6 1.6E+02 0.0035 35.6 24.4 351 26-384 20-435 (970)
244 PF00790 VHS: VHS domain; Int 78.6 20 0.00044 33.8 10.2 76 113-188 41-122 (140)
245 PF14664 RICTOR_N: Rapamycin-i 78.5 88 0.0019 34.7 16.5 107 152-265 22-136 (371)
246 smart00802 UME Domain in UVSB 77.8 6.4 0.00014 35.7 6.2 60 209-270 28-87 (107)
247 COG5221 DOP1 Dopey and related 77.4 47 0.001 41.1 14.4 116 226-348 135-256 (1618)
248 KOG1851 Uncharacterized conser 77.3 1.3E+02 0.0028 39.1 18.6 155 111-269 1523-1681(1710)
249 PF14750 INTS2: Integrator com 77.2 2.1E+02 0.0046 36.1 22.8 112 278-389 90-229 (1049)
250 KOG1525 Sister chromatid cohes 76.8 2.3E+02 0.0051 36.4 34.9 308 16-337 78-441 (1266)
251 cd03569 VHS_Hrs_Vps27p VHS dom 76.7 37 0.00079 32.3 11.3 74 116-189 43-119 (142)
252 KOG3961 Uncharacterized conser 76.2 4 8.6E-05 41.5 4.7 95 272-366 107-205 (262)
253 PF12612 TFCD_C: Tubulin foldi 76.2 10 0.00022 37.8 7.8 117 27-186 2-118 (193)
254 KOG2759 Vacuolar H+-ATPase V1 75.7 1.4E+02 0.0031 33.5 17.3 264 75-347 116-436 (442)
255 PF11707 Npa1: Ribosome 60S bi 75.7 1.2E+02 0.0027 32.7 21.7 200 141-386 13-238 (330)
256 PF14631 FancD2: Fanconi anaem 75.6 49 0.0011 42.9 15.2 117 227-348 425-541 (1426)
257 KOG1837 Uncharacterized conser 75.4 1.9E+02 0.0041 37.6 19.4 77 193-269 1538-1614(1621)
258 KOG0803 Predicted E3 ubiquitin 75.0 1.2E+02 0.0026 39.0 17.9 177 30-209 81-289 (1312)
259 KOG2137 Protein kinase [Signal 74.9 23 0.00051 41.8 11.1 114 27-146 384-500 (700)
260 COG5656 SXM1 Importin, protein 74.7 2E+02 0.0044 34.7 33.7 291 88-389 431-761 (970)
261 smart00638 LPD_N Lipoprotein N 74.3 1.8E+02 0.0038 33.9 23.9 132 155-304 393-541 (574)
262 cd03565 VHS_Tom1 VHS domain fa 74.1 74 0.0016 30.2 12.6 75 116-190 40-121 (141)
263 PF08713 DNA_alkylation: DNA a 74.0 28 0.00062 34.5 10.4 167 163-360 27-196 (213)
264 smart00802 UME Domain in UVSB 73.0 15 0.00032 33.4 7.2 83 162-246 18-105 (107)
265 PF01603 B56: Protein phosphat 72.8 1.7E+02 0.0036 32.9 23.3 237 29-316 129-378 (409)
266 COG5095 TAF6 Transcription ini 71.9 21 0.00045 38.2 8.9 149 148-310 194-361 (450)
267 COG5231 VMA13 Vacuolar H+-ATPa 71.3 1.3E+02 0.0028 32.8 14.6 68 279-347 356-426 (432)
268 PF11864 DUF3384: Domain of un 71.2 1.9E+02 0.0041 32.9 27.4 274 45-337 3-318 (464)
269 KOG4199 Uncharacterized conser 71.2 1.2E+02 0.0025 33.4 14.3 102 71-183 207-312 (461)
270 KOG2122 Beta-catenin-binding p 70.9 3.3E+02 0.0072 35.6 21.5 96 320-415 530-645 (2195)
271 KOG2973 Uncharacterized conser 70.7 1.6E+02 0.0035 31.9 18.1 130 35-170 6-144 (353)
272 PF14225 MOR2-PAG1_C: Cell mor 70.4 1.1E+02 0.0024 32.3 14.0 142 73-230 111-259 (262)
273 PF07571 DUF1546: Protein of u 69.8 23 0.0005 31.1 7.6 62 42-103 16-80 (92)
274 PF12397 U3snoRNP10: U3 small 69.3 46 0.001 30.3 9.9 70 277-351 4-76 (121)
275 smart00185 ARM Armadillo/beta- 68.3 6.3 0.00014 28.0 3.1 29 320-348 12-40 (41)
276 KOG1848 Uncharacterized conser 68.0 63 0.0014 41.1 12.9 119 71-189 995-1137(1610)
277 cd07064 AlkD_like_1 A new stru 67.1 87 0.0019 31.6 12.2 82 149-236 109-190 (208)
278 cd03568 VHS_STAM VHS domain fa 66.8 53 0.0011 31.4 9.9 72 277-348 35-109 (144)
279 PF09324 DUF1981: Domain of un 66.6 34 0.00074 29.6 7.9 65 29-93 14-79 (86)
280 PF14631 FancD2: Fanconi anaem 66.5 4.1E+02 0.0089 34.9 27.1 142 149-296 429-571 (1426)
281 PF02847 MA3: MA3 domain; Int 66.1 63 0.0014 28.7 9.9 98 4-101 5-108 (113)
282 PF12765 Cohesin_HEAT: HEAT re 65.7 6 0.00013 29.6 2.6 25 31-55 17-41 (42)
283 cd00872 PI3Ka_I Phosphoinositi 65.7 18 0.0004 35.6 6.7 46 111-161 70-115 (171)
284 cd00864 PI3Ka Phosphoinositide 65.3 24 0.00051 34.0 7.3 46 110-160 69-114 (152)
285 KOG2199 Signal transducing ada 65.2 89 0.0019 34.7 12.1 89 115-203 46-138 (462)
286 cd03567 VHS_GGA VHS domain fam 65.0 84 0.0018 29.9 10.8 71 278-348 37-115 (139)
287 KOG1851 Uncharacterized conser 64.6 4.4E+02 0.0095 34.6 21.3 113 232-348 1477-1597(1710)
288 PF01603 B56: Protein phosphat 64.6 2.4E+02 0.0052 31.6 23.6 184 113-344 132-321 (409)
289 PF14911 MMS22L_C: S-phase gen 64.4 2.4E+02 0.0051 31.4 19.7 266 25-328 66-349 (373)
290 cd00197 VHS_ENTH_ANTH VHS, ENT 63.2 1E+02 0.0022 27.8 10.7 74 275-348 33-114 (115)
291 cd03561 VHS VHS domain family; 62.8 70 0.0015 29.8 9.9 72 277-348 35-111 (133)
292 cd00870 PI3Ka_III Phosphoinosi 62.5 25 0.00053 34.5 6.9 46 111-161 77-122 (166)
293 cd00871 PI4Ka Phosphoinositide 62.5 8.8 0.00019 37.9 3.8 35 124-161 81-115 (175)
294 PF08713 DNA_alkylation: DNA a 62.2 38 0.00083 33.6 8.5 64 154-223 119-182 (213)
295 PF12765 Cohesin_HEAT: HEAT re 61.7 9.6 0.00021 28.5 3.0 27 152-178 15-41 (42)
296 PF08389 Xpo1: Exportin 1-like 61.3 26 0.00056 32.3 6.7 124 129-260 3-147 (148)
297 PF00790 VHS: VHS domain; Int 60.7 70 0.0015 30.1 9.5 72 277-348 40-117 (140)
298 PF12333 Ipi1_N: Rix1 complex 60.7 29 0.00063 31.0 6.5 61 25-85 4-65 (102)
299 KOG3687 Tuberin - Rap/ran-GTPa 60.6 4.3E+02 0.0092 33.1 26.7 244 165-415 483-805 (1697)
300 KOG3687 Tuberin - Rap/ran-GTPa 59.0 2.7E+02 0.0058 34.7 15.4 178 28-205 464-700 (1697)
301 PF11698 V-ATPase_H_C: V-ATPas 58.8 42 0.00092 31.1 7.3 71 278-348 42-114 (119)
302 KOG2256 Predicted protein invo 58.7 3.5E+02 0.0076 32.1 16.1 179 312-513 233-449 (661)
303 cd03569 VHS_Hrs_Vps27p VHS dom 58.5 90 0.002 29.7 9.8 72 277-348 39-113 (142)
304 cd00869 PI3Ka_II Phosphoinosit 58.3 12 0.00025 36.9 3.8 44 113-161 72-115 (169)
305 PF14745 WASH-7_N: WASH comple 58.0 1.1E+02 0.0023 36.0 12.3 92 378-515 129-239 (567)
306 PF11698 V-ATPase_H_C: V-ATPas 57.9 19 0.00042 33.4 4.9 83 137-224 30-114 (119)
307 KOG4567 GTPase-activating prot 57.6 2.8E+02 0.0062 30.1 14.8 131 14-169 175-310 (370)
308 PF00613 PI3Ka: Phosphoinositi 57.3 9.9 0.00021 37.8 3.2 79 70-161 42-121 (184)
309 PRK12323 DNA polymerase III su 56.2 82 0.0018 37.6 10.8 43 278-320 186-228 (700)
310 KOG0890 Protein kinase of the 56.1 7E+02 0.015 34.2 25.5 203 146-348 865-1112(2382)
311 KOG1822 Uncharacterized conser 55.9 6.5E+02 0.014 33.8 29.2 221 124-348 886-1126(2067)
312 PF14225 MOR2-PAG1_C: Cell mor 55.5 2.7E+02 0.0059 29.3 19.0 143 192-348 60-216 (262)
313 PF12783 Sec7_N: Guanine nucle 55.2 1.9E+02 0.0042 27.7 11.9 116 209-356 35-153 (168)
314 PF09324 DUF1981: Domain of un 55.0 53 0.0012 28.4 7.0 65 116-180 19-84 (86)
315 PF04499 SAPS: SIT4 phosphatas 54.9 1.2E+02 0.0026 34.8 11.8 110 191-313 29-153 (475)
316 PF11919 DUF3437: Domain of un 54.9 24 0.00053 31.0 4.9 54 131-185 6-59 (90)
317 PF04388 Hamartin: Hamartin pr 53.9 80 0.0017 37.8 10.5 69 278-348 69-139 (668)
318 PF12726 SEN1_N: SEN1 N termin 51.8 5.1E+02 0.011 31.3 31.5 152 232-389 436-612 (727)
319 PF12783 Sec7_N: Guanine nucle 51.4 2.2E+02 0.0048 27.3 11.6 69 158-226 76-147 (168)
320 smart00288 VHS Domain present 51.3 1.3E+02 0.0028 28.2 9.5 72 277-348 35-110 (133)
321 cd03572 ENTH_epsin_related ENT 51.1 72 0.0016 29.7 7.6 68 287-358 9-77 (122)
322 PF12054 DUF3535: Domain of un 51.0 4.2E+02 0.0091 30.1 18.7 270 46-322 101-438 (441)
323 smart00145 PI3Ka Phosphoinosit 50.8 31 0.00068 34.4 5.5 77 153-242 42-119 (184)
324 PF12074 DUF3554: Domain of un 50.6 3.5E+02 0.0076 29.1 19.5 91 152-246 19-112 (339)
325 PF12333 Ipi1_N: Rix1 complex 50.2 37 0.0008 30.4 5.4 57 193-249 8-65 (102)
326 PF04078 Rcd1: Cell differenti 50.2 1.2E+02 0.0026 32.0 9.8 146 210-388 110-261 (262)
327 PF12612 TFCD_C: Tubulin foldi 48.9 2.8E+02 0.0061 27.5 13.5 129 234-370 4-141 (193)
328 KOG1789 Endocytosis protein RM 48.3 6.9E+02 0.015 31.8 25.5 119 49-184 1742-1883(2235)
329 KOG3036 Protein involved in ce 48.0 2.4E+02 0.0051 29.8 11.3 149 206-388 135-290 (293)
330 cd07064 AlkD_like_1 A new stru 47.6 3.1E+02 0.0067 27.6 16.8 179 150-358 7-189 (208)
331 PF14228 MOR2-PAG1_mid: Cell m 47.3 7.3E+02 0.016 31.8 29.4 83 173-264 488-570 (1120)
332 cd06561 AlkD_like A new struct 47.1 2.8E+02 0.006 26.9 15.4 113 108-236 69-181 (197)
333 KOG2022 Nuclear transport rece 46.7 6.6E+02 0.014 31.1 29.2 161 22-186 455-621 (982)
334 cd00197 VHS_ENTH_ANTH VHS, ENT 45.8 1.4E+02 0.003 26.8 8.6 70 111-180 34-111 (115)
335 KOG0905 Phosphoinositide 3-kin 44.3 1.2E+02 0.0025 38.3 9.7 52 208-262 902-953 (1639)
336 cd00872 PI3Ka_I Phosphoinositi 44.3 49 0.0011 32.6 5.7 79 154-244 38-116 (171)
337 PF04063 DUF383: Domain of unk 44.2 3.1E+02 0.0068 27.5 11.5 121 40-184 3-132 (192)
338 PF11701 UNC45-central: Myosin 43.9 39 0.00085 32.6 4.9 133 241-379 7-153 (157)
339 PF11264 ThylakoidFormat: Thyl 43.8 1.8E+02 0.0038 29.9 9.7 104 70-173 67-181 (216)
340 smart00567 EZ_HEAT E-Z type HE 43.5 25 0.00053 23.8 2.5 28 47-84 2-29 (30)
341 cd00864 PI3Ka Phosphoinositide 43.4 62 0.0013 31.2 6.2 48 190-242 67-114 (152)
342 PRK07003 DNA polymerase III su 43.2 1.6E+02 0.0036 35.8 10.7 44 277-320 180-223 (830)
343 KOG0929 Guanine nucleotide exc 43.0 9.2E+02 0.02 31.8 18.9 137 150-289 1170-1321(1514)
344 KOG1566 Conserved protein Mo25 42.7 4.8E+02 0.01 28.4 15.9 221 157-385 81-335 (342)
345 PF14228 MOR2-PAG1_mid: Cell m 42.7 1.8E+02 0.0038 37.1 11.3 153 5-171 937-1118(1120)
346 PRK07764 DNA polymerase III su 42.6 1.9E+02 0.004 35.7 11.4 45 278-322 182-226 (824)
347 PF06371 Drf_GBD: Diaphanous G 42.2 3.2E+02 0.0069 26.3 11.2 58 126-183 128-186 (187)
348 PF06371 Drf_GBD: Diaphanous G 42.1 28 0.0006 33.8 3.7 92 213-307 93-186 (187)
349 PF04499 SAPS: SIT4 phosphatas 41.1 3.2E+02 0.0069 31.4 12.4 73 95-187 22-95 (475)
350 PRK14957 DNA polymerase III su 41.0 2.9E+02 0.0063 32.3 12.2 46 277-322 180-225 (546)
351 COG5234 CIN1 Beta-tubulin fold 39.6 1.7E+02 0.0038 35.0 9.8 39 26-64 240-278 (993)
352 KOG2011 Sister chromatid cohes 39.6 5.5E+02 0.012 32.4 14.5 148 66-220 279-430 (1048)
353 cd00870 PI3Ka_III Phosphoinosi 38.6 51 0.0011 32.3 4.8 49 191-244 75-123 (166)
354 PF00613 PI3Ka: Phosphoinositi 38.0 21 0.00046 35.5 2.1 82 150-243 40-121 (184)
355 PRK07994 DNA polymerase III su 37.4 2E+02 0.0043 34.4 10.2 44 277-320 180-223 (647)
356 cd03565 VHS_Tom1 VHS domain fa 37.3 2.6E+02 0.0056 26.5 9.3 72 277-348 36-114 (141)
357 PF03130 HEAT_PBS: PBS lyase H 37.1 19 0.00042 24.1 1.2 26 48-83 1-26 (27)
358 PF05997 Nop52: Nucleolar prot 36.2 4.8E+02 0.01 26.5 14.6 71 36-106 4-77 (217)
359 COG2812 DnaX DNA polymerase II 36.1 3.6E+02 0.0078 31.4 11.8 72 251-322 126-225 (515)
360 PRK14965 DNA polymerase III su 36.1 1.8E+02 0.0039 34.2 9.6 46 277-322 180-225 (576)
361 PF07834 RanGAP1_C: RanGAP1 C- 35.8 2.1E+02 0.0045 28.6 8.5 129 25-169 30-165 (183)
362 PF04388 Hamartin: Hamartin pr 35.1 5.7E+02 0.012 30.7 13.7 152 157-329 6-161 (668)
363 KOG1848 Uncharacterized conser 35.0 1.2E+03 0.025 30.6 22.3 231 36-268 846-1134(1610)
364 PHA01351 putative minor struct 34.6 4.8E+02 0.01 31.3 12.2 33 404-436 607-639 (1070)
365 PF14677 FANCI_S3: FANCI solen 34.6 2E+02 0.0044 29.4 8.6 130 112-243 77-219 (219)
366 PF12231 Rif1_N: Rap1-interact 34.6 6.6E+02 0.014 27.6 25.6 219 86-308 59-303 (372)
367 cd06561 AlkD_like A new struct 34.6 4.4E+02 0.0094 25.6 12.2 79 240-324 108-186 (197)
368 PF11919 DUF3437: Domain of un 34.0 88 0.0019 27.5 5.1 56 213-269 6-61 (90)
369 PRK14969 DNA polymerase III su 34.0 2.6E+02 0.0057 32.4 10.5 46 277-322 180-225 (527)
370 PF11935 DUF3453: Domain of un 33.9 5.5E+02 0.012 26.5 15.0 189 246-447 2-239 (239)
371 smart00544 MA3 Domain in DAP-5 33.8 2.2E+02 0.0047 25.2 7.9 74 28-101 32-108 (113)
372 KOG0905 Phosphoinositide 3-kin 33.7 70 0.0015 40.2 5.7 33 126-161 902-934 (1639)
373 KOG2022 Nuclear transport rece 33.5 1E+03 0.022 29.5 38.7 295 208-529 478-817 (982)
374 PF14961 BROMI: Broad-minded p 32.1 1.2E+03 0.026 30.0 17.6 66 278-346 160-228 (1296)
375 PF12530 DUF3730: Protein of u 32.1 5.7E+02 0.012 26.2 21.5 174 163-348 9-188 (234)
376 KOG4199 Uncharacterized conser 31.7 5.1E+02 0.011 28.7 11.1 57 127-183 387-443 (461)
377 PF12397 U3snoRNP10: U3 small 31.6 3.9E+02 0.0085 24.1 10.5 70 316-387 2-76 (121)
378 PF11701 UNC45-central: Myosin 31.5 3.4E+02 0.0074 26.0 9.3 132 43-179 16-154 (157)
379 PF08161 NUC173: NUC173 domain 30.6 5.7E+02 0.012 25.7 12.7 143 214-368 18-183 (198)
380 KOG2153 Protein involved in th 30.5 1E+03 0.022 28.5 24.3 57 231-310 318-375 (704)
381 PF04510 DUF577: Family of unk 30.2 5.6E+02 0.012 25.5 11.9 48 297-346 60-108 (174)
382 KOG4552 Vitamin-D-receptor int 29.4 4.4E+02 0.0095 26.9 9.5 110 321-460 23-146 (272)
383 PF04869 Uso1_p115_head: Uso1 28.6 5.9E+02 0.013 27.5 11.4 52 278-329 154-208 (312)
384 PRK08691 DNA polymerase III su 28.6 3.1E+02 0.0068 33.1 9.9 28 339-366 263-290 (709)
385 PLN03060 inositol phosphatase- 28.3 5.2E+02 0.011 26.4 10.1 97 70-171 70-174 (206)
386 PF06685 DUF1186: Protein of u 27.9 7.2E+02 0.016 26.0 12.9 26 159-184 115-142 (249)
387 PRK13266 Thf1-like protein; Re 27.9 4.2E+02 0.0091 27.4 9.5 102 70-171 72-184 (225)
388 PF07539 DRIM: Down-regulated 27.7 2.9E+02 0.0062 26.3 7.8 88 68-164 12-101 (141)
389 PF01417 ENTH: ENTH domain; I 27.5 1.8E+02 0.004 26.6 6.4 73 192-264 35-119 (125)
390 PF09685 Tic20: Tic20-like pro 27.4 1.1E+02 0.0024 26.8 4.8 43 14-58 2-47 (109)
391 KOG2213 Apoptosis inhibitor 5/ 27.0 9.5E+02 0.021 27.1 18.0 253 37-329 13-288 (460)
392 PF04510 DUF577: Family of unk 26.8 6.4E+02 0.014 25.0 10.7 58 149-206 78-140 (174)
393 KOG2005 26S proteasome regulat 26.7 1.2E+03 0.026 28.2 14.8 86 316-417 654-739 (878)
394 PRK14949 DNA polymerase III su 26.3 4.2E+02 0.009 33.1 10.5 43 278-320 181-223 (944)
395 PF04078 Rcd1: Cell differenti 26.2 8E+02 0.017 26.0 11.5 58 292-349 109-168 (262)
396 TIGR03060 PS_II_psb29 photosys 26.1 4.9E+02 0.011 26.7 9.5 99 70-171 72-182 (214)
397 PF04003 Utp12: Dip2/Utp12 Fam 26.0 1.3E+02 0.0028 26.7 4.9 65 110-174 28-95 (110)
398 PF07531 TAFH: NHR1 homology t 25.8 2.1E+02 0.0045 25.6 6.0 74 153-249 6-80 (96)
399 KOG2020 Nuclear transport rece 25.8 9.7E+02 0.021 30.5 13.7 149 33-185 92-259 (1041)
400 KOG2199 Signal transducing ada 25.8 5.7E+02 0.012 28.7 10.4 64 320-383 45-116 (462)
401 PF12054 DUF3535: Domain of un 25.1 1E+03 0.023 26.9 19.2 78 169-249 101-180 (441)
402 COG5657 CSE1 CAS/CSE protein i 24.8 1.4E+03 0.031 28.4 27.6 176 170-348 508-689 (947)
403 PRK14951 DNA polymerase III su 24.8 3.4E+02 0.0074 32.3 9.4 44 278-321 186-229 (618)
404 PF08405 Calici_PP_N: Viral po 24.5 5.8E+02 0.013 27.7 9.9 112 226-341 215-333 (358)
405 PF14222 MOR2-PAG1_N: Cell mor 24.2 1.2E+03 0.026 27.3 21.8 231 112-348 83-345 (552)
406 KOG0890 Protein kinase of the 23.8 2.1E+03 0.046 30.1 18.0 205 47-265 892-1112(2382)
407 PF14663 RasGEF_N_2: Rapamycin 23.7 1.5E+02 0.0032 27.1 4.9 34 28-61 4-37 (115)
408 KOG1048 Neural adherens juncti 23.1 1.4E+03 0.03 27.7 19.2 323 34-400 277-679 (717)
409 COG5231 VMA13 Vacuolar H+-ATPa 22.3 1.1E+03 0.023 26.1 12.9 97 113-209 194-296 (432)
410 KOG3723 PH domain protein Melt 22.2 1.3E+03 0.029 27.2 18.3 282 140-447 19-351 (851)
411 PF07778 CENP-I: Mis6 ; Inter 21.8 7.3E+02 0.016 28.9 11.0 121 236-367 98-236 (511)
412 PF13925 Katanin_con80: con80 21.3 2.6E+02 0.0057 27.1 6.4 42 278-319 68-109 (164)
413 PF01417 ENTH: ENTH domain; I 21.0 3.1E+02 0.0068 25.0 6.6 74 275-349 35-121 (125)
414 PF03542 Tuberin: Tuberin; In 20.9 9.9E+02 0.022 26.4 11.4 133 109-247 136-286 (356)
415 PF09759 Atx10homo_assoc: Spin 20.9 1.2E+02 0.0027 27.3 3.7 30 116-145 30-61 (102)
416 PF11707 Npa1: Ribosome 60S bi 20.8 1.1E+03 0.023 25.5 21.3 202 116-323 58-314 (330)
417 COG5234 CIN1 Beta-tubulin fold 20.6 7.3E+02 0.016 30.1 10.5 123 125-250 207-349 (993)
418 cd08812 CARD_RIG-I_like Caspas 20.1 4.6E+02 0.0099 22.8 7.0 55 421-475 32-86 (88)
No 1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-154 Score=1238.39 Aligned_cols=574 Identities=53% Similarity=0.864 Sum_probs=544.7
Q ss_pred hhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 005975 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLV 100 (666)
Q Consensus 21 ~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLl 100 (666)
|+|.....|++.|+|||+.||+|+|.+|||||||++|||+|++||+++.|||+|||+||++.+|+|++||+||++|||++
T Consensus 73 aLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLi 152 (675)
T KOG0212|consen 73 ALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLI 152 (675)
T ss_pred HhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHH
Confidence 58888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccc-cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005975 101 KDIVTESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 101 KDIv~e~~-~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
||||+|.+ +|+++.|||+|.||||+.||.+|+|+++||++++++|+.+|+.|+|+|++|||+||+|++++||..++.+|
T Consensus 153 kdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 153 KDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLL 232 (675)
T ss_pred HHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999987 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCC-CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcH-HHHHHH
Q 005975 180 WEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-KIRVVA 257 (666)
Q Consensus 180 ~~fL~eI~~~~~~-d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~-eIR~~A 257 (666)
++|+++|+.+|.. |+++++++++.+++++++++|..|+.||.+|++++|.++++|+++++.++|||++++++ .+++.|
T Consensus 233 ~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 233 SEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHH
Confidence 9999999999987 99999999999999999999999999999999999999999999999999999999988 699999
Q ss_pred HHHHHHHHHhhCCC--CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH
Q 005975 258 RETNEELRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (666)
Q Consensus 258 ~~~n~~L~~~i~~~--~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e 335 (666)
...|+.+++.+.+. .+.+|++++++++++++.++.++||++||+|++.++.+.|+++.-|.+.+|++||++|||++++
T Consensus 313 ~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH
Confidence 99999999988754 3349999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHH
Q 005975 336 VVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMV 413 (666)
Q Consensus 336 Vv~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mV 413 (666)
|+..++.+++.||. +..++.+|+..|+++|+.|+++++.||++||||||..|+||+||+.+|+||+.|+|++||++||
T Consensus 393 vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstMV 472 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTMV 472 (675)
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999999994 4557899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHH
Q 005975 414 QALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQL 493 (666)
Q Consensus 414 q~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~e~~~~~l~q~ 493 (666)
|+||+||+||+||++||++||+ +.+++++++|+|||++|||||||++|||||||||+|||++++.||++|+||++|+|+
T Consensus 473 ~~Ln~iLlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~eitvd~L~el 551 (675)
T KOG0212|consen 473 QALNTILLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADVEITVDFLVEL 551 (675)
T ss_pred HHHHhhhcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhccCcchhhHHHHhhhcccCCcccccccccccCCCCCcccccc
Q 005975 494 DKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILH 573 (666)
Q Consensus 494 d~LvqllEspif~~lRl~Lle~~~~p~L~k~LygllmlLPQ~s~af~~L~~RL~~v~~~~~~~~~~~~~~~~~~~~~~~~ 573 (666)
||||||+|||||||||||||||.+||||.|||||||||||| |+||.||++||+|||++...... +...+.|+
T Consensus 552 DKLVqLiEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ-S~AF~tL~~RLqcvp~~~~~~~~--~~~~~~p~----- 623 (675)
T KOG0212|consen 552 DKLVQLIESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ-SSAFQTLRHRLQCVPNPVGNQTI--DAREAVPF----- 623 (675)
T ss_pred HHHHHHHhcchHHHHHHHHhccccCchHHHHHHHHHHHccc-HHHHHHHHHHHhcCCchhhccch--hhhccCCc-----
Confidence 99999999999999999999999999999999999999999 99999999999999998642211 11111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhH
Q 005975 574 SMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGK 619 (666)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~~~q~~~~~~~~ 619 (666)
..+.+..+|+|++|++||++||++|+..+.
T Consensus 624 ----------------s~~~~~~~idf~~LlqhFkavq~~h~~~r~ 653 (675)
T KOG0212|consen 624 ----------------SQKADSPGIDFAELLQHFKAVQNKHLEQRE 653 (675)
T ss_pred ----------------ccccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 013445789999999999999999987443
No 2
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=7.4e-78 Score=577.60 Aligned_cols=182 Identities=62% Similarity=1.045 Sum_probs=177.8
Q ss_pred cchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHH
Q 005975 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFV 447 (666)
Q Consensus 368 d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~ 447 (666)
|+++|++||++||||||..+|||+||+++|++|++++|++||++|||+||+||+||+|+++||++||+...+++++++|.
T Consensus 1 D~~LL~~Rg~~IIRqLC~~L~~E~iy~~la~iL~~~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~~~~~~~~~lF~ 80 (182)
T PF11916_consen 1 DRKLLERRGSFIIRQLCVLLNAERIYRTLASILESEEDLEFASMMVQTLNNILLTSPELFDLRKKLRNLDTDEEGQSLFS 80 (182)
T ss_pred CHhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998434566999999
Q ss_pred HHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHH
Q 005975 448 SLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYG 527 (666)
Q Consensus 448 ~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Lle~~~~p~L~k~Lyg 527 (666)
+||+||||||||++|||||+|||||||++|+.||++|+|+++|+|||+||||+|||||+|||||||||++||||+|||||
T Consensus 81 ~Ly~sWchNpva~lSLcLl~q~Y~~A~~li~~~~~~e~~~~~L~qiD~LVqLlESPiF~~lRlqLLep~~~p~L~k~Lyg 160 (182)
T PF11916_consen 81 TLYRSWCHNPVATLSLCLLAQAYEHAYNLIQSFAELEVTVDFLVQIDKLVQLLESPIFTYLRLQLLEPEKYPYLYKCLYG 160 (182)
T ss_pred HHHHHHhcCHHHHHHHHHHHhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhhhhHHHHHHHhCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCcchhhHHHHhhhcccC
Q 005975 528 LLMLLPQQSAAFKILRTRLKTVP 550 (666)
Q Consensus 528 llmlLPQ~s~af~~L~~RL~~v~ 550 (666)
|||+||| |+||++|++||+|||
T Consensus 161 LlMlLPQ-s~af~~L~~RL~~vp 182 (182)
T PF11916_consen 161 LLMLLPQ-SSAFNTLRNRLQSVP 182 (182)
T ss_pred HHHHCCC-hHHHHHHHhhcccCC
Confidence 9999999 999999999999998
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-37 Score=336.88 Aligned_cols=345 Identities=18% Similarity=0.226 Sum_probs=295.5
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.-+++|...++++++|+++-+|.+.+-.++.|+ ..+.+..|+++++.||.++..+|.+..+|| .+|.++++|....
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~---s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ 162 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIA---STGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF 162 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeee---cccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH
Confidence 567889999999999999999999998877775 445567889999999999999999999999 8999999998875
Q ss_pred c----ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 107 S----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 107 ~----~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
. ...+++.+||.+.+.+.+.+|.+|.-++.+++++.-+....+..+++.|+.+||.+.+|.+++||+..|.++.-+
T Consensus 163 lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L 242 (885)
T KOG2023|consen 163 LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL 242 (885)
T ss_pred HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3 358899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--cCcccccchHhHHHHHhhhhcCCcHHHHHHH---
Q 005975 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCISDKEEKIRVVA--- 257 (666)
Q Consensus 183 L~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l--~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A--- 257 (666)
++.-..+-..++++||++|+..+++.|+.++++|++.+..+.+. +++.+.||+++++|.++..|.|++.++--..
T Consensus 243 levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~e 322 (885)
T KOG2023|consen 243 LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNE 322 (885)
T ss_pred HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcc
Confidence 98776666679999999999999999999999999955456663 5778999999999999999999865443322
Q ss_pred ----------------HHHH----HHHHHhhCC------CC-------------CCCC----------hHhHHHHHHHhc
Q 005975 258 ----------------RETN----EELRAIKAD------PA-------------DGFD----------VGPILSIATRQL 288 (666)
Q Consensus 258 ----------------~~~n----~~L~~~i~~------~~-------------~~~d----------l~~il~~L~~~L 288 (666)
.+.. +...+.-.+ +. +.+| ++.+++.|.+.|
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL 402 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 1110 000000000 00 0111 245567789999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh------hccchHHHHHHHHH
Q 005975 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA------KDLQHFRQLVVFLV 362 (666)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is------~~~~~F~~fm~~LL 362 (666)
.++.|.+|++++..+++++++|.++|.+|++.++|.++..|+|..+.||+++||+|+|+| ++++||+++|.+|+
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 36799999999999
Q ss_pred hhccccchhhhhH
Q 005975 363 HNFRVDNSLLEKR 375 (666)
Q Consensus 363 ~lf~~d~~lLe~R 375 (666)
++.-+.+|-+++.
T Consensus 483 ~~llD~NK~VQEA 495 (885)
T KOG2023|consen 483 RRLLDSNKKVQEA 495 (885)
T ss_pred HHHhcccHHHHHH
Confidence 9998777777754
No 4
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=295.69 Aligned_cols=470 Identities=18% Similarity=0.272 Sum_probs=378.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHH-HhhcCCchhHHHHH-HHHHHHHHHhhccccccc
Q 005975 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALC-KLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 35 ~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~-kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~ 111 (666)
..|.++++|+-+++|++|+..+.+++|.+-. ....++..+++.|+ ..+..++.+.|+|+ .++++..-.+..+.+. .
T Consensus 3 ~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y 81 (675)
T KOG0212|consen 3 ASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-Y 81 (675)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-H
Confidence 4678999999999999999999999987543 44578899999888 56677888888888 7888877777777666 6
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP- 190 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~- 190 (666)
++.++|++..|+.++|.++|+++|+.++++.++.+.+++.|++++++.|+++.+|++..||.+| +.|++++++|....
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 89999999997643
Q ss_pred -CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 191 -SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 191 -~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
.++++.+||.|-+++...++.+|...+.||..+...++-.|..|+|.++++++.+++|+.+|||.++..+..++++.+.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH-HHHHHH----HHH
Q 005975 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE-VVLLVL----EVH 344 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e-Vv~~~l----~lL 344 (666)
..+..+|++++++++..++.++++..+..|+.|+-.+....|..+.+++++++..+|++++|..+. +...+- .++
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999999999999999999999998874 333222 245
Q ss_pred HHHhh----ccchHHHHHHHHHhhccccchhhhhHHHH--HHHHHhccCChH------HHHHHHHHhhcccCChHHHHHH
Q 005975 345 ACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL--IIRRLCVLLDAE------RVYRELSTILEGEADLDFACTM 412 (666)
Q Consensus 345 a~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~--IIR~Lc~~L~~E------~Iy~~la~iL~~~~dl~F~~~m 412 (666)
+..++ .+-.|.++|..|.+.+.+|+. ++|.+. ||+.|....++| .||.++-.-|++.+| +.+...
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~--~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd-~vvl~~ 397 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDRE--ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD-EVVLLA 397 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh-HHHHHH
Confidence 55552 234577999999999999876 777766 999999988875 788888888877555 344444
Q ss_pred HHHHHHHhccchhHHHHHHHHHhccC---------CcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 005975 413 VQALNLILLTSSELSELRDLLKKSLV---------NPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEE 483 (666)
Q Consensus 413 Vq~Ln~iLLTs~El~~lR~~L~~~l~---------~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~ 483 (666)
...|..|--. ++-..+|+-|...|. ..+|--+-. =||++-.+ |+-|..+..+=+-
T Consensus 398 L~lla~i~~s-~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIR--------------qlC~lL~a-E~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 398 LSLLASICSS-SNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIR--------------QLCLLLNA-ERIYRSIADILER 461 (675)
T ss_pred HHHHHHHhcC-cccccHHHHHHHHHHHHhhhhHHHHhhhhHHHH--------------HHHHHhCH-HHHHHHHHHHHhc
Confidence 5555544433 333345555554221 112212222 24655433 4444444333222
Q ss_pred ccchH---HHHHHHHHHHHhhchhhHHHHHHhcC--CCCChhHHHHHH
Q 005975 484 DLNVK---FLVQLDKLIRLLETPIFAYLRLQLLE--PGRYTWLLKALY 526 (666)
Q Consensus 484 e~~~~---~l~q~d~LvqllEspif~~lRl~Lle--~~~~p~L~k~Ly 526 (666)
|=+.+ ..||+=..+ |+-||-.-.||=+|=. -++-..||.|||
T Consensus 462 e~nl~FAstMV~~Ln~i-LlTStELf~LR~~Lk~lsn~es~~lF~cLy 508 (675)
T KOG0212|consen 462 EENLKFASTMVQALNTI-LLTSTELFQLRNKLKDLSNEESQNLFCCLY 508 (675)
T ss_pred cccchHHHHHHHHHHhh-hcccHHHHHHHHHHHhccChhhhHHHHHHH
Confidence 33322 333333332 5678888889988763 666788999999
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.88 E-value=1.4e-22 Score=179.51 Aligned_cols=83 Identities=66% Similarity=1.035 Sum_probs=80.7
Q ss_pred hhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 005975 20 ADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRL 99 (666)
Q Consensus 20 ~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrL 99 (666)
.++|..+.+|++.|+|||++||+|+|+||||||||++|||+|+++++++++|++||++|+++++|+|++||+||+.|||+
T Consensus 15 i~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 15 IALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 005975 100 VKD 102 (666)
Q Consensus 100 lKD 102 (666)
+||
T Consensus 95 lkd 97 (97)
T PF12755_consen 95 LKD 97 (97)
T ss_pred hcC
Confidence 996
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.6e-16 Score=182.47 Aligned_cols=414 Identities=16% Similarity=0.215 Sum_probs=299.3
Q ss_pred HHhhhhhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhh
Q 005975 27 ETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
+.-...|...+|.++. .+.+.||+.-|..+..|++ +.+-..||++++.|+..+.+++++-|+.| -.|..+.. ++
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~---~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~-~~ 149 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIAR---NDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPE-TF 149 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH---hccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh-hh
Confidence 4456778889999885 7789999999999777765 33333799999999999999999999999 45555544 45
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc--hhhh----hchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDML----GFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~--~~Li----~yLp~fL~gLf~lLsD~~~eVR~~A~~~ 178 (666)
.+.....++.|.+++.++|.+++..||-.++..+..+...-+ .+.. ..+|..+..+-..+.|.+.+.-+.+-++
T Consensus 150 ~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 150 GNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred ccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 455555689999999999999776699999988887765442 3444 4455555555555566666666777777
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHhcCc---ccccchHhHHHHHhhhhcCCcHH-
Q 005975 179 LWEFLQEIKNSPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEK- 252 (666)
Q Consensus 179 L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~--d~~irl~Al~WL~~~i~l~~~---~l~pylp~lL~~LL~~Lsd~~~e- 252 (666)
|.+|+...++-....+..+|...+.-..++ |+.+|..|++.|..+.+..|. ..-+|.+.+++.++.+|.+.+.+
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 777776554433447888999888877766 588999999988777776432 34568999999999999864222
Q ss_pred ---------------HHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhh
Q 005975 253 ---------------IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (666)
Q Consensus 253 ---------------IR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~ 317 (666)
....|.++.+.+.--+ +...-+..+++.+...+.+++|.-|-|+|..|..+.++|++.|.+.
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L---~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~ 386 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHL---GGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN 386 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcC---ChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2233344433332221 2223357888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------------------------------------------
Q 005975 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD----------------------------------------------- 350 (666)
Q Consensus 318 l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~----------------------------------------------- 350 (666)
++++++.+++.|+|++|.||-.+|..++++|.+
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 999999999999999999999999999999831
Q ss_pred --cchHHHHHHHHHhhc-cccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhccc--CChHHHHHHHHHHHHHhccch-
Q 005975 351 --LQHFRQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE--ADLDFACTMVQALNLILLTSS- 424 (666)
Q Consensus 351 --~~~F~~fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~--~dl~F~~~mVq~Ln~iLLTs~- 424 (666)
++||+.+|+.++.++ .++.+.++ |.+-.++|.+=... .=.++..+.+-.|-.+|.|+.
T Consensus 467 ~l~pYLd~lm~~~l~~L~~~~~~~v~----------------e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~ 530 (1075)
T KOG2171|consen 467 ILEPYLDGLMEKKLLLLLQSSKPYVQ----------------EQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADD 530 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHH----------------HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCc
Confidence 256677777544444 33344333 45666777665442 225566677777878887766
Q ss_pred -hHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHH-hhhHHHHHHHHHhhccc
Q 005975 425 -ELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLA-QTYHHASAVIQSLVEED 484 (666)
Q Consensus 425 -El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~-~~Y~~a~~l~~~~~~~e 484 (666)
|+.++|.+=-.+ ++++.+..=- +=+++|..+++...+..
T Consensus 531 ~d~r~LrgktmEc---------------------isli~~AVGke~F~~~a~eliqll~~~~ 571 (1075)
T KOG2171|consen 531 KDLRELRGKTMEC---------------------LSLIARAVGKEKFLPLAEELIQLLLELQ 571 (1075)
T ss_pred hhhHHHHhhHHHH---------------------HHHHHHHhhhhhhhHhHHHHHHHHHhhc
Confidence 777777664331 2333333332 23688999999988885
No 7
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.4e-15 Score=174.41 Aligned_cols=312 Identities=19% Similarity=0.249 Sum_probs=235.6
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHH-HHHhcchhhhhHHHHHHHHHHhhc
Q 005975 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNI-AKVVRGDFIIFFNQIFDALCKLSA 83 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI-~Kv~r~~il~~f~eIfd~L~kl~~ 83 (666)
-+|||.-|..+ .|...++|+..++|.+.+.=.|||..||.+- .++.|+ +---+..+-.|+|+|++.|...++
T Consensus 977 aAfGf~~i~~~------a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM-~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 977 AAFGFGAIAKQ------AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAM-TSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhchHHHHHH------HHHhhhhHHHHhhHHHhhhccCCcHHHHHHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999 7999999999999999999999999999843 344443 221233445788888888888888
Q ss_pred CCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHH
Q 005975 84 DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (666)
Q Consensus 84 D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~ 162 (666)
+.+-.||+++ -+|..+ +..-|..++...+|++...+|+
T Consensus 1050 ~kewRVReasclAL~dL-----------------------------------------l~g~~~~~~~e~lpelw~~~fR 1088 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADL-----------------------------------------LQGRPFDQVKEKLPELWEAAFR 1088 (1702)
T ss_pred chhHHHHHHHHHHHHHH-----------------------------------------HcCCChHHHHHHHHHHHHHHHH
Confidence 8888888777 332222 1224446788999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhcCCCCC--------HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005975 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVD--------YGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (666)
Q Consensus 163 lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d--------~~~iI~iLl~-~~~s~d~~irl~Al~WL~~~i~l~~~~l~p 233 (666)
.+.|-...||++|+.+.+.+-+.+.+..+++ ++.+.|.++. .+.+.-+++|..++.-+..+.+.+|..+.|
T Consensus 1089 vmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP 1168 (1702)
T KOG0915|consen 1089 VMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP 1168 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc
Confidence 9999999999999998888888777654432 4556666665 344667999999999999999999999999
Q ss_pred chHhHHHHHhhhhcCCcHHH-HHHHHHH-------HHHHHHhhCCCC----------CCCC---hHhHHHHHHHhcCC-C
Q 005975 234 YYADILGAILPCISDKEEKI-RVVARET-------NEELRAIKADPA----------DGFD---VGPILSIATRQLSS-E 291 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~eI-R~~A~~~-------n~~L~~~i~~~~----------~~~d---l~~il~~L~~~L~~-~ 291 (666)
|+|+++|.++...+.-++.+ --.+.++ .+++...+.... +.+| +++++|.+++...+ -
T Consensus 1169 ~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1169 HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV 1248 (1702)
T ss_pred hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Confidence 99999999999988665532 2223332 222222221111 1244 47888999988864 4
Q ss_pred cHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHH---HHHHHHHHhhccchHHHHHHHHHhhc
Q 005975 292 WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLL---VLEVHACIAKDLQHFRQLVVFLVHNF 365 (666)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~---~l~lLa~Is~~~~~F~~fm~~LL~lf 365 (666)
+-.||.+|-..+..|..+++.+|.||.++++.+++..+.|.++-|+.. ++--|.++++ +..+.+.+..++.-+
T Consensus 1249 gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss-~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1249 GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS-PDQMQKLIETLLADL 1324 (1702)
T ss_pred CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999988877764 3444555554 556777777776644
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-13 Score=161.67 Aligned_cols=364 Identities=17% Similarity=0.172 Sum_probs=248.8
Q ss_pred chHHHHHHHHHHHhHH--HHhh----------hhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhh
Q 005975 2 HKWYSFLFEIIVEQFL--LYAD----------LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII 69 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~----------~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~ 69 (666)
+.+|.++-..++-..| ..|| ++......++.|++.|+..+.|+++||||+||.++..++.....++..
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 4566667777777777 3343 555667789999999999999999999999999999998766667765
Q ss_pred hHHHHHH-HHHHhhcCCch-hHHHHH-HHHHHHHHHhhcccccccHhhhHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005975 70 FFNQIFD-ALCKLSADSDA-NVQSAA-HLLDRLVKDIVTESDQFSIEEFIP-LLRERMNVLNPYVRQFLVGWITVLDSVP 145 (666)
Q Consensus 70 ~f~eIfd-~L~kl~~D~d~-~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIP-lL~eri~~~np~vR~~alswL~~L~svp 145 (666)
+..+.++ +|.....|++. .|...| .++..+.++...+.=...++.++. .+........|.+|..+++.|..+....
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 5555444 67677777754 666666 667766665444321233666665 4444556788999999999999999999
Q ss_pred chhhhhchHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhc---CCCCHHHHHHHH
Q 005975 146 DIDMLGFLPDFLDGLFNMLSDSS----HEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRA---ASPDEFTRLTAI 217 (666)
Q Consensus 146 ~~~Li~yLp~fL~gLf~lLsD~~----~eVR~~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~---~s~d~~irl~Al 217 (666)
+..+++|++.+++-|.+++...+ ++.|..+-+|++-....+++. ...+-+++|+.+...+ .+.|.-.+--.+
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~ 586 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI 586 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence 99999999999999999986554 567777788888887777643 3446688999988874 333344455555
Q ss_pred HHHHHHHHhcCcccccchHhHHHHHhhhhcCC-c-------H----------------------------HHHHHHHHHH
Q 005975 218 TWINEFVKLGGDQLVPYYADILGAILPCISDK-E-------E----------------------------KIRVVARETN 261 (666)
Q Consensus 218 ~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~-~-------~----------------------------eIR~~A~~~n 261 (666)
..+..++++.|++|.||+|.++|.+++..... + + +-+..|+.+.
T Consensus 587 ~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~L 666 (1075)
T KOG2171|consen 587 AFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEAL 666 (1075)
T ss_pred HHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHH
Confidence 55567999999999999999999999876532 1 0 1112222222
Q ss_pred HHHHHhhCCCCCCCChHhHHH-HHHHhcCCCcHHHHHHHHHHHHHHHh-------hChHHHhhhhHHHHHHHHHhcCCCC
Q 005975 262 EELRAIKADPADGFDVGPILS-IATRQLSSEWEATRIEALHWISTLLN-------RHRTEVLHFLNDIFDTLLKALSDPS 333 (666)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~-~L~~~L~~~~~~tR~aaL~WL~~L~~-------~~p~~i~~~l~~l~p~LL~~LsD~s 333 (666)
..+....++ +....+.++++ .+-.....-+..+|.||+.-+-.+.. ++|..+.+....++|.+++.+.++-
T Consensus 667 v~~a~~lk~-~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~ 745 (1075)
T KOG2171|consen 667 GEYAKELKE-AFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEP 745 (1075)
T ss_pred HHHHHhhhh-hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCC
Confidence 222222221 12233456666 22222334456789999865443333 5788888999999999999998865
Q ss_pred -HHHHHHHHHHHHHH-------hhccchHHHHHHHHHhhcc
Q 005975 334 -DEVVLLVLEVHACI-------AKDLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 334 -~eVv~~~l~lLa~I-------s~~~~~F~~fm~~LL~lf~ 366 (666)
.+|....++.++.. +=++.+.+.+...++....
T Consensus 746 e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l 786 (1075)
T KOG2171|consen 746 ETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLL 786 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHH
Confidence 55655555544442 2256677776666665443
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.4e-14 Score=157.95 Aligned_cols=351 Identities=16% Similarity=0.160 Sum_probs=272.5
Q ss_pred hhHHHHHhhcCCCCHH-HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccc
Q 005975 32 QIVPPVLNSFSDQDSR-VRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQF 110 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~r-VR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f 110 (666)
.++..+-...+|+.+. .|..+.-+.............+|+..+|+.++..+.|..+.||.+|.. .+|.+..-.+.+
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~---a~kai~~~~~~~ 250 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVE---AAKAIMRCLSAY 250 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHH---HHHHHHHhcCcc
Confidence 3556667777888655 444343333222333334556999999999999999999999999944 344455555678
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
.+..|+|.+..-+....|+++..+++-+..+....+..+..++|++++.|...|+|++++||+++.+||.+|...+.+
T Consensus 251 aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-- 328 (569)
T KOG1242|consen 251 AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-- 328 (569)
T ss_pred hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--
Confidence 899999999999998899999999999999999999999999999999999999999999999999999999998866
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc-----cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-----PYYADILGAILPCISDKEEKIRVVARETNEELR 265 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~-----pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (666)
.|+..++|.|++++.++...+.. ++ ..++...|+ |-+.-++|.+-..+.+.+.++++.+...-+.+.
T Consensus 329 -~dI~~~ip~Lld~l~dp~~~~~e-~~------~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 329 -PDIQKIIPTLLDALADPSCYTPE-CL------DSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred -HHHHHHHHHHHHHhcCcccchHH-HH------HhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 67999999999999998843322 11 122233333 448889999999999999999988888888888
Q ss_pred HhhCCCCC-CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHH-HHHHHHH
Q 005975 266 AIKADPAD-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEV-VLLVLEV 343 (666)
Q Consensus 266 ~~i~~~~~-~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV-v~~~l~l 343 (666)
+++.++.. ...++.+++.+...+.+..+++|.-+...++.++++.++.-+ ++..|.+...++++..++ +..+.+.
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~ 477 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQD 477 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhh
Confidence 88866433 233688899999999998999999999999999999888755 899999999999888766 5567778
Q ss_pred HHHHhh--ccchHHHHHHHHHhhccccch--hh------------hhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005975 344 HACIAK--DLQHFRQLVVFLVHNFRVDNS--LL------------EKRGALIIRRLCVLLDAERVYRELSTIL 400 (666)
Q Consensus 344 La~Is~--~~~~F~~fm~~LL~lf~~d~~--lL------------e~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (666)
++++.. +..++.+.|.+++.....+.. .. ..||...--.+|..+++ +|+.+++--
T Consensus 478 l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~--~~k~~ad~d 548 (569)
T KOG1242|consen 478 LSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDE--FLKGLADND 548 (569)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHH--HHHHhhhcC
Confidence 888773 567888888888775543311 11 33555666666666666 777766443
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-13 Score=150.22 Aligned_cols=347 Identities=20% Similarity=0.216 Sum_probs=267.3
Q ss_pred hhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhh--cCCchhHHH--------
Q 005975 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLS--ADSDANVQS-------- 91 (666)
Q Consensus 24 ~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv--~r~~il~~f~eIfd~L~kl~--~D~d~~Vr~-------- 91 (666)
-.+.+++..|+.-++..-+|+|..|---|||-...++.. ++....+|.+.+++.|.... +|.|....+
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 345678899999999999999999999999999999865 44555699999999998543 333332221
Q ss_pred ----------------------------------------------HH-HHHHHHHHHhhcccccccHhhhHHHHHHhhc
Q 005975 92 ----------------------------------------------AA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN 124 (666)
Q Consensus 92 ----------------------------------------------gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~ 124 (666)
-. .+||-+.-=. +..-++.++|+|.+.+.
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf----~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF----GDELLPILLPLLKEHLS 403 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh----HHHHHHHHHHHHHHHcC
Confidence 11 1121111100 13348899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHH
Q 005975 125 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEILVQ 203 (666)
Q Consensus 125 ~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~-~d~~~iI~iLl~ 203 (666)
..+|.+|...+-.+..+..-.-..+.+|||++.+-|..+|+|..+-||+.+|=.|.+|-+=+...+. -.+.+++.-++.
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 9999999999888888887666779999999999999999999999999999999999987765443 357888888999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC-Cc-------HHHHHHHHHHHHHH-----HHh---
Q 005975 204 RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KE-------EKIRVVARETNEEL-----RAI--- 267 (666)
Q Consensus 204 ~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd-~~-------~eIR~~A~~~n~~L-----~~~--- 267 (666)
++-+++..+|..|+.....+.+-+++.++||+..||..+..+.+. .. +.|+..|..+-..| ++.
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmP 563 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMP 563 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence 999999999999999999999999999999999999999988873 32 34666666552211 000
Q ss_pred --------hCC--------------------------------------------------C-----CC------CCCh-
Q 005975 268 --------KAD--------------------------------------------------P-----AD------GFDV- 277 (666)
Q Consensus 268 --------i~~--------------------------------------------------~-----~~------~~dl- 277 (666)
+.+ + ++ .+|+
T Consensus 564 PLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~ 643 (885)
T KOG2023|consen 564 PLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLL 643 (885)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHH
Confidence 000 0 00 0111
Q ss_pred -----------------HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q 005975 278 -----------------GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 278 -----------------~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
..+++.+.+.+.|+..++|.+|.-.++.+..-|++.+.|+.+..+|.+...|+-+.-.|...|
T Consensus 644 SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA 723 (885)
T KOG2023|consen 644 SGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNA 723 (885)
T ss_pred hHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHH
Confidence 245566777888999999999999999999999999999999999999987777777789999
Q ss_pred HHHHHHHh-----hccchHHHHHHHHHhhcc---ccchhhhh
Q 005975 341 LEVHACIA-----KDLQHFRQLVVFLVHNFR---VDNSLLEK 374 (666)
Q Consensus 341 l~lLa~Is-----~~~~~F~~fm~~LL~lf~---~d~~lLe~ 374 (666)
+|.++.|+ +..+|-.+++..|..... +++.++|.
T Consensus 724 ~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllEN 765 (885)
T KOG2023|consen 724 IWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLEN 765 (885)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHh
Confidence 99999999 345677778887777653 23455554
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=7.3e-15 Score=163.15 Aligned_cols=320 Identities=23% Similarity=0.240 Sum_probs=225.9
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC
Q 005975 6 SFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS 85 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~ 85 (666)
+++||.-... +|+..++|+-.++|.|+.||+|....||.+|-++...|......... ..+++.+...+.+.
T Consensus 196 ~~a~~~~~~~------Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV---K~llpsll~~l~~~ 266 (569)
T KOG1242|consen 196 LLAFEAAQGN------LGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV---KLLLPSLLGSLLEA 266 (569)
T ss_pred HHHHHHHHHh------cCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh---hHhhhhhHHHHHHH
Confidence 4455555555 89999999999999999999999999999999998888765443322 23344444333223
Q ss_pred chhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHh
Q 005975 86 DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNM 163 (666)
Q Consensus 86 d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li~yLp~fL~gLf~l 163 (666)
.-.-|.|+ ++++.+.+-.- ..=++.++.+||.+.+.+.+..|.+|....+++..+.++-+ .++..++|.+++ .
T Consensus 267 kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld----~ 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLD----A 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----H
Confidence 45667777 77775544222 22245689999999999999999999999999999988655 466677777766 7
Q ss_pred cCCCChhHHHHHHHHHH-HHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--CcccccchHhHHH
Q 005975 164 LSDSSHEIRQQADSALW-EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILG 240 (666)
Q Consensus 164 LsD~~~eVR~~A~~~L~-~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~--~~~l~pylp~lL~ 240 (666)
++||+..+......... .|+.++ ....+.-|+|++...+...+..++..++..+..++.+- +.++.||+|.++|
T Consensus 342 l~dp~~~~~e~~~~L~~ttFV~~V---~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp 418 (569)
T KOG1242|consen 342 LADPSCYTPECLDSLGATTFVAEV---DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLP 418 (569)
T ss_pred hcCcccchHHHHHhhcceeeeeee---cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhh
Confidence 89999766655422211 122222 13568889999999998888888888888788888874 7899999999999
Q ss_pred HHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCC-----------------------CC------------hHhHHHHHH
Q 005975 241 AILPCISDKEEKIRVVARETNEELRAIKADPADG-----------------------FD------------VGPILSIAT 285 (666)
Q Consensus 241 ~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~-----------------------~d------------l~~il~~L~ 285 (666)
++-..+.+..||+|.+|.++.+.+.+-.++.... .+ +..+++.+.
T Consensus 419 ~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~ 498 (569)
T KOG1242|consen 419 GLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEIL 498 (569)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999998777655432110 00 122222222
Q ss_pred HhcCC--CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 005975 286 RQLSS--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (666)
Q Consensus 286 ~~L~~--~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~ 342 (666)
....+ .++..|...+-.+..+-...+....+|+.++++.+++.+.|.++.++..+++
T Consensus 499 a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 499 ANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred HHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 22211 1222333333333344445677888999999999999999988887776654
No 12
>PRK09687 putative lyase; Provisional
Probab=99.50 E-value=7.6e-12 Score=131.68 Aligned_cols=260 Identities=15% Similarity=0.086 Sum_probs=204.3
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhh
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
.+.|-..-+++++..+.|+|.+||..|+.+|..+.. +++++.+.+++.|.++.||..| ..|..+ .
T Consensus 17 ~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l----g 82 (280)
T PRK09687 17 YSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQL----G 82 (280)
T ss_pred HHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhc----C
Confidence 345666677888999999999999999999866531 4778888999999999999988 555553 1
Q ss_pred cccccccHhhhHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~er-i~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
.. .......+|.|... ..++++.||..++..+..+.+-. ..+.|..+..+...+.|+++.||..|..+|+.+-
T Consensus 83 ~~--~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 83 MA--KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred CC--ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 11 01135677888877 57899999999999999875321 2347788888989999999999999988885332
Q ss_pred HHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHH
Q 005975 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (666)
Q Consensus 184 ~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~ 263 (666)
-+..++.|+..+.++++.+|..|..-+..+ -.--|..++.|...+.|.++++|..|..+.+.
T Consensus 157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--------~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSN--------KYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 256889999999999999999999988754 11257899999999999999999999888754
Q ss_pred HHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC-CCCHHHHHHHHH
Q 005975 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLE 342 (666)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls-D~s~eVv~~~l~ 342 (666)
+ ++ ...++.|.+.+.+++ .|..+...++.+-.. ..+|.|...+. +++++|+.++.|
T Consensus 219 ~----~~-------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 219 R----KD-------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred c----CC-------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 2 21 588999999998866 577787887777552 57888888886 889999999999
Q ss_pred HHHH
Q 005975 343 VHAC 346 (666)
Q Consensus 343 lLa~ 346 (666)
.+.+
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8875
No 13
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.4e-11 Score=144.73 Aligned_cols=367 Identities=17% Similarity=0.228 Sum_probs=265.7
Q ss_pred HHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHhhcCCchhHHHHHH-H
Q 005975 18 LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDANVQSAAH-L 95 (666)
Q Consensus 18 ~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r-~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~-~ 95 (666)
+..+=-.-++.|+.+|..-++..++++.||||.++|.|+..+..+-. +++....+++|.++++-..|-..+||+||+ +
T Consensus 1025 Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1025 LITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred hccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455789999999999999999999999999999999886532 245578899999999999999999999994 4
Q ss_pred HHHHHHHhhcc-------cccccHhhhHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC
Q 005975 96 LDRLVKDIVTE-------SDQFSIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (666)
Q Consensus 96 LdrLlKDIv~e-------~~~f~L~~fIPlL~e-ri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~ 167 (666)
.+.+-|=+|.- .+...++.++|.|.+ .+-+.-+.+|.+.++-+--+.+..+..+.+|+|++.+-|.+..+.-
T Consensus 1105 ~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1105 ARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred HHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc
Confidence 44444433332 234558888998775 3456789999999999999999999999999999999999888877
Q ss_pred ChhHHHH--------HHHHHHHHHHHhhcC-C----------CCC---HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHH
Q 005975 168 SHEIRQQ--------ADSALWEFLQEIKNS-P----------SVD---YGRMAEILVQRAASPD-EFTRLTAITWINEFV 224 (666)
Q Consensus 168 ~~eVR~~--------A~~~L~~fL~eI~~~-~----------~~d---~~~iI~iLl~~~~s~d-~~irl~Al~WL~~~i 224 (666)
.+.|-.- ..++++..=.++.+. | ++| +++|+|.+.+.++.+- --+|.-|...|.-++
T Consensus 1185 E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1185 EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 6665432 234444444333322 1 344 4788888888776653 346777777787777
Q ss_pred HhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHH-HHHHhcCCCcHHHHHHHHHHH
Q 005975 225 KLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS-IATRQLSSEWEATRIEALHWI 303 (666)
Q Consensus 225 ~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~-~L~~~L~~~~~~tR~aaL~WL 303 (666)
.-.+.++-||..+++.++++...|-++.+|.....+.+.|.+.-.++. ....++ .+..++.+....-..++-.-.
T Consensus 1265 ~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq----~qKLie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1265 QRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ----MQKLIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred HHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH----HHHHHHHHHHHHhccCCCccchhHHHHH
Confidence 778999999999999999999999999999999999999887754311 234444 455555544433344444333
Q ss_pred HHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc----c-hHHHHHHHHHhhccccc-hhhhhHHH
Q 005975 304 STLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL----Q-HFRQLVVFLVHNFRVDN-SLLEKRGA 377 (666)
Q Consensus 304 ~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~----~-~F~~fm~~LL~lf~~d~-~lLe~Rg~ 377 (666)
.+....++.+..|.+.++|.+.=...++..+....=-++|..+++++ + |....+..+.....++. =-+..-+.
T Consensus 1341 -~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~A 1419 (1702)
T KOG0915|consen 1341 -NIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAA 1419 (1702)
T ss_pred -HHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 39999999999999999999988777765555555556888888532 1 44445555554443332 22333345
Q ss_pred HHHHHHhccCCh
Q 005975 378 LIIRRLCVLLDA 389 (666)
Q Consensus 378 ~IIR~Lc~~L~~ 389 (666)
--||..|..++.
T Consensus 1420 kai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1420 KAIRVIAEGLSS 1431 (1702)
T ss_pred HHHHHHcccccc
Confidence 567777777644
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=6.4e-12 Score=141.55 Aligned_cols=332 Identities=13% Similarity=0.108 Sum_probs=244.9
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchh-HHHHH-HHHHHHHHHhhcc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDAN-VQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i-l~~f~eIfd~L~kl~~D~d~~-Vr~gA-~~LdrLlKDIv~e 106 (666)
-++|..-+++.++.+.++++..|+..+..|+ .-++ ...|++++..|..-+.+.++. ||+++ +++.-+|.|+..+
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA---~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe 164 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIA---CIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE 164 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHH---HhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH
Confidence 3567888999999999999999999977765 3333 256899999999888888775 99999 9999999998876
Q ss_pred cccccHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhhh--hchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDML--GFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~--~np~vR~~alswL~~L~svp~~~Li--~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
.-.-.-+.++--+...++. .+..+|..+..++.+=....+.+|- .--+-|+...+..-.-++.+||.+|-.||.++
T Consensus 165 vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkI 244 (859)
T KOG1241|consen 165 VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKI 244 (859)
T ss_pred HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHH
Confidence 3222345556666666654 5678999888888743322222221 11233566677777778999999999999998
Q ss_pred HHHhhcCCCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-------cCcccc----c--------chHhHHHHH
Q 005975 183 LQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKL-------GGDQLV----P--------YYADILGAI 242 (666)
Q Consensus 183 L~eI~~~~~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l-------~~~~l~----p--------ylp~lL~~L 242 (666)
...--..-...+ +.+..+-+..+.++++++++.+++.++.+++- .++..- | -++.++|.|
T Consensus 245 m~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 245 MSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 852211000112 22555566678999999999999966544442 011111 1 155889999
Q ss_pred hhhhcCCc--H-----HHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChHHH
Q 005975 243 LPCISDKE--E-----KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEV 314 (666)
Q Consensus 243 L~~Lsd~~--~-----eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~i 314 (666)
+..|...+ + .+..+|..|..-+.+.+++ --+..+++.+.+.+.+++|.-|.+|...++-+.++ ++...
T Consensus 325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L 400 (859)
T KOG1241|consen 325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL 400 (859)
T ss_pred HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence 99887422 1 4778888888888888765 12468899999999999999999999999977776 78899
Q ss_pred hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhcccc
Q 005975 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~d 368 (666)
.+..++.+|.+++.++|++--|+..+-|.+++|++ ++.+....+..+++-+.++
T Consensus 401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999994 5677777777777766555
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.44 E-value=1.4e-11 Score=148.72 Aligned_cols=244 Identities=21% Similarity=0.162 Sum_probs=186.2
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccccc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~ 111 (666)
-++.++..+.|+|+.||..|+++|..+.. ++.++.|.+++.|+++.||..| ..|.++.+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 45678888999999999999999877631 4567888888999999999988 666555321110
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~ 191 (666)
.+.|.+.+.+.||.||..++.++..+..-. ...|.+.+.|+++.||.+|..+|..+- .
T Consensus 686 ----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~--- 743 (897)
T PRK13800 686 ----APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVD----D--- 743 (897)
T ss_pred ----hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhccc----C---
Confidence 256667788899999999999998764211 124567899999999999988887641 1
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC
Q 005975 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (666)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (666)
.+.|+..+.++++++|..+...|..+-.- -+..++.+...+.|+++++|..|..+...+ ..
T Consensus 744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~- 804 (897)
T PRK13800 744 ------VESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAEL----GC- 804 (897)
T ss_pred ------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhc----CC-
Confidence 13467788999999999999988754321 123367788889999999999998887553 11
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
-..+...+...+.|++|.+|.+|+..|..+.. +..++.|++.|+|++..||..+.+.|+++.
T Consensus 805 -----~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 805 -----PPDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred -----cchhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 12345668888899999999999999976532 234578999999999999999999999984
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.38 E-value=8.9e-11 Score=134.54 Aligned_cols=281 Identities=18% Similarity=0.225 Sum_probs=206.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHH
Q 005975 43 DQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLR 120 (666)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~ 120 (666)
+.+++..|--..++..+.+..+- ...++...||+-|++-+...+..+|+-- ++|.+++- +.-+.+.|.|.
T Consensus 901 ~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l--------~epesLlpkL~ 972 (1233)
T KOG1824|consen 901 ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL--------IEPESLLPKLK 972 (1233)
T ss_pred hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh--------CChHHHHHHHH
Confidence 33444444444444444333222 2236778899999988877777677765 78887744 56788999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC--C-HHHH
Q 005975 121 ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--D-YGRM 197 (666)
Q Consensus 121 eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~--d-~~~i 197 (666)
.++.+..|.+|..+++.+....+--+..+-+++-.+++...+.+.|++.+||+.|-.++..+.+ ++|.. | ++++
T Consensus 973 ~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaah---NKpslIrDllpeL 1049 (1233)
T KOG1824|consen 973 LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAH---NKPSLIRDLLPEL 1049 (1233)
T ss_pred HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHc---cCHhHHHHHHHHH
Confidence 9999999999999999999765544444455666667777779999999999999777777765 44432 3 4666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCCh
Q 005975 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (666)
Q Consensus 198 I~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl 277 (666)
.|.+.+...-..+.||. ++++| ++.-.|..-++|++|-+|..+|++...+ ..|+
T Consensus 1050 Lp~Ly~eTkvrkelIre---------VeMGP--------------FKH~VDdgLd~RKaaFEcmytLLdscld---~~di 1103 (1233)
T KOG1824|consen 1050 LPLLYSETKVRKELIRE---------VEMGP--------------FKHTVDDGLDLRKAAFECMYTLLDSCLD---RLDI 1103 (1233)
T ss_pred HHHHHHhhhhhHhhhhh---------hcccC--------------ccccccchHHHHHHHHHHHHHHHHhhhh---hccH
Confidence 66666555544444444 34444 3466788899999999999999988764 6788
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC------------CCCHHHHHHHHHHHH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS------------DPSDEVVLLVLEVHA 345 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls------------D~s~eVv~~~l~lLa 345 (666)
.++++++...|.|. -+.|+-++.-+..++..||..+...+|.++..|=++++ |..++.++.++++++
T Consensus 1104 t~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~ 1182 (1233)
T KOG1824|consen 1104 TEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVA 1182 (1233)
T ss_pred HHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHH
Confidence 89999999999876 67899999999999999999999999999999988885 445778888888777
Q ss_pred HHh-----hccchHHHHHHHH
Q 005975 346 CIA-----KDLQHFRQLVVFL 361 (666)
Q Consensus 346 ~Is-----~~~~~F~~fm~~L 361 (666)
.+. +..+.|..|+..+
T Consensus 1183 ~L~~ip~v~~np~~~df~sqi 1203 (1233)
T KOG1824|consen 1183 ALLTIPEVEKNPQFSDFESQI 1203 (1233)
T ss_pred HHhcccccccChHHHHHHHHh
Confidence 664 2345566665544
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.37 E-value=3.3e-10 Score=128.48 Aligned_cols=311 Identities=20% Similarity=0.198 Sum_probs=195.0
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhh
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
...-.+.+.++|.+++.|+++.||+.|+.+++.+.+...+.+-.. +++.+.+++.|+++.|+.+| .++..+ + .
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~--~ 181 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-K--C 181 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-H--C
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-c--c
Confidence 355678889999999999999999999999999988644433221 58888888999999999888 443333 1 0
Q ss_pred cccc-cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 105 TESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 105 ~e~~-~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
.+.. .--+..++..|.+.+.+.+|..+..++..+..+......+-.. ..+++.+..++...++.|.-.|..++-.+.
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 0000 0125566666666667899999999988888766554433311 456666666777788888887766655332
Q ss_pred HHhhcCCCC-CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 184 QEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 184 ~eI~~~~~~-d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
. .. .+..+++.|...+.++++.+|..++.++..+....+.. +...-..+.....+++..||..+.+...
T Consensus 260 ~------~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~----v~~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 260 P------SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA----VFNQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp S------SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH----HGTHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred c------chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh----hhhhhhhhheecCCCChhHHHHHHHHHh
Confidence 1 12 35788999999999999999999999998877665222 2222222333334778889888776554
Q ss_pred HHHHhhCCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q 005975 263 ELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (666)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l 341 (666)
.+.. .-++..+++.|..++ ...+...|..++.-++.++.+++.....++ ..+++.+....+.++..+.
T Consensus 330 ~l~~-------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v----~~l~~ll~~~~~~~~~~~~ 398 (526)
T PF01602_consen 330 KLAN-------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYV----DTLLKLLEISGDYVSNEII 398 (526)
T ss_dssp HH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHH----HHHHHHHHCTGGGCHCHHH
T ss_pred hccc-------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHH----HHHHHhhhhccccccchHH
Confidence 4432 123456777777777 333556777777777777777654443333 3333333334444444444
Q ss_pred HHHHHHhh-ccchHHHHHHHHHhhc
Q 005975 342 EVHACIAK-DLQHFRQLVVFLVHNF 365 (666)
Q Consensus 342 ~lLa~Is~-~~~~F~~fm~~LL~lf 365 (666)
..+..+.. +++..+..+..|.+.+
T Consensus 399 ~~i~~ll~~~~~~~~~~l~~L~~~l 423 (526)
T PF01602_consen 399 NVIRDLLSNNPELREKILKKLIELL 423 (526)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHH
Confidence 44444332 2222334444444444
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=5.5e-10 Score=126.62 Aligned_cols=341 Identities=16% Similarity=0.143 Sum_probs=237.1
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~ 108 (666)
.....+.+++.+..+|...|..+..++..+...-.+ .+.-+...+-+-+.++++.+|..| ..+.++.-
T Consensus 40 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------- 108 (526)
T PF01602_consen 40 ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------- 108 (526)
T ss_dssp -GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------
T ss_pred CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------
Confidence 347888999999999999999998887777543222 233467777777889999999888 55555431
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~-fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
..-.+.++|.+.+.+.+++|.||+.|+-.+..+....+. .++. +++.+.+++.|+++.|+.+|..++..+ +
T Consensus 109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i----~ 180 (526)
T PF01602_consen 109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI----K 180 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH----H
T ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH----c
Confidence 223688899999999999999999999888877655333 2333 688899999999999999998888777 1
Q ss_pred cCCCC--C-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 188 NSPSV--D-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 188 ~~~~~--d-~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
..+.. + +..++..|...+..++|..+..++..+..+....+..-.. ..+++.+.+.+.+..+.|.-.|.++.-.
T Consensus 181 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~- 257 (526)
T PF01602_consen 181 CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIK- 257 (526)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHH-
Confidence 11111 2 4566667666678999999998888887444322211100 4688888888887777777666665432
Q ss_pred HHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
.... ...+..+++.|...+.+.++.+|..++.++..+....+..+. +..-.+- ....|++..|+..++++|
T Consensus 258 --l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~---~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 258 --LSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILF---FLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp --HSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHH---HHHCSSSHHHHHHHHHHH
T ss_pred --hhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhh---eecCCCChhHHHHHHHHH
Confidence 2211 112467888999999999999999999999999999977777 3333322 223488899999999999
Q ss_pred HHHhhccchHHHHHHHHHhhc-cccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhcc
Q 005975 345 ACIAKDLQHFRQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEG 402 (666)
Q Consensus 345 a~Is~~~~~F~~fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~ 402 (666)
..+++ +...+.++..|++.+ ..+..-.....-.-|+.+|...++ +.....+-+++..
T Consensus 329 ~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 329 YKLAN-ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred hhccc-ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 99994 778888999999988 332222333333344555544432 4444555555543
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.31 E-value=4e-10 Score=136.25 Aligned_cols=246 Identities=19% Similarity=0.179 Sum_probs=185.8
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~ 108 (666)
.+..++.+...+.|+|+.||.+|+++|..+++.... -+.|...+.|+++.||.+| ..|..+- . +
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~----~--~ 714 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALR----A--G 714 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhc----c--C
Confidence 356788999999999999999999999887542111 1456677788999999988 4444421 0 1
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
+ .+.+.+.+.+.|+.+|..++.++..+... +.|...+.|++++||.++..+|..+-..-
T Consensus 715 --~----~~~l~~~L~D~d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-- 773 (897)
T PRK13800 715 --D----AALFAAALGDPDHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAGG-- 773 (897)
T ss_pred --C----HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhcccc--
Confidence 1 23456788999999999999998865321 34567899999999999999888775311
Q ss_pred CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
..-++.|...++++|+.+|..|+.-|..+ +.. +.+.+.+...+.|+++.+|..|.++.+.+
T Consensus 774 ------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l---- 834 (897)
T PRK13800 774 ------APAGDAVRALTGDPDPLVRAAALAALAEL---GCP------PDDVAAATAALRASAWQVRQGAARALAGA---- 834 (897)
T ss_pred ------chhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc------chhHHHHHHHhcCCChHHHHHHHHHHHhc----
Confidence 12367788888999999999999988654 211 23446688899999999999999887542
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
. -.+.++.|...+.|+++.+|.+|...|..+ . .-+...+.|.+.|+|++++|+..+.+.|..
T Consensus 835 ~-------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~--------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 835 A-------ADVAVPALVEALTDPHLDVRKAAVLALTRW-P--------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred c-------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc-C--------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1 146678899999999999999999999886 1 123456678899999999999999888753
No 20
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.29 E-value=7.5e-12 Score=111.05 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=85.0
Q ss_pred hHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC
Q 005975 88 NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD 166 (666)
Q Consensus 88 ~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD 166 (666)
|.|+|+ .+|......+..... ..++.++|++..++.++|++||+++|++++++.++.+.++++|+++++++|+++++|
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457788 788887777666643 459999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 005975 167 SSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 167 ~~~eVR~~A~~~L~~fL~ 184 (666)
++++||.+| +.|+++++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999999998 77888876
No 21
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=1.3e-09 Score=114.90 Aligned_cols=238 Identities=17% Similarity=0.148 Sum_probs=182.5
Q ss_pred HHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005975 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL 153 (666)
.+.|..++.|.+..||..| ..|..+ .-+...+.+.+.+.+.|+.+|..++..+..+..-... .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~-----------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR-----------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc-----------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4556677799999999988 443332 2345567777778899999999999999887542211 4
Q ss_pred HHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005975 154 PDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 154 p~fL~gLf~l-LsD~~~eVR~~A~~~L~~fL~eI~~~~~~-d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l 231 (666)
+..++.|..+ +.|++++||..|..+|+.+.. ... .....++.+.....+++..+|..|+.-+.. ++
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~-----~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~---~~---- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCK-----KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSV---IN---- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc-----cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhc---cC----
Confidence 5677777766 799999999999999988753 112 246678888888999999999988887742 22
Q ss_pred ccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh
Q 005975 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p 311 (666)
-+..++.|++.+.|+++++|..|..+.+.+ +.+-+++++.|...+.|+++.+|.+|...|+.+-.
T Consensus 157 ---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~---------~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--- 221 (280)
T PRK09687 157 ---DEAAIPLLINLLKDPNGDVRNWAAFALNSN---------KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--- 221 (280)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence 267889999999999999999999988664 11235888999999999999999999999987432
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcc
Q 005975 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (666)
+..+|.|++.|.|+. ++..+.+.|++|++ +-..+.+..+++.+.
T Consensus 222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--KTLLPVLDTLLYKFD 265 (280)
T ss_pred -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--HhHHHHHHHHHhhCC
Confidence 367889999999876 67788899999985 346666666666555
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.21 E-value=3.5e-08 Score=113.80 Aligned_cols=391 Identities=14% Similarity=0.169 Sum_probs=262.4
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHHHhhc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSAAHLLDRLVKDIVT 105 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~--~Vr~gA~~LdrLlKDIv~ 105 (666)
++...|..-.+..++.+-.-||+-||.++..++-.+.++. +.++.+.|.+.++.+.. .+|.--.+|..++.....
T Consensus 170 ~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l---y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 170 NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL---YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 3566677777777788888999999999999987766655 56788888887766543 344433677777776666
Q ss_pred ccccccHhhhHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc-CCCC-------------
Q 005975 106 ESDQFSIEEFIPLLRERM---NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-SDSS------------- 168 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri---~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL-sD~~------------- 168 (666)
+.+. ++++.+|.+.+.. ...+...|++.++.+..|.--.+.++.+|.|+++.-+...+ -|||
T Consensus 247 r~~~-h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~ 325 (1233)
T KOG1824|consen 247 RFGS-HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF 325 (1233)
T ss_pred hhhc-ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh
Confidence 6554 4899999999988 56778999999999999999888999999999999887443 2222
Q ss_pred --------------------hhHHHHHHHHHHHHHHHhhcC---------C-----------------------------
Q 005975 169 --------------------HEIRQQADSALWEFLQEIKNS---------P----------------------------- 190 (666)
Q Consensus 169 --------------------~eVR~~A~~~L~~fL~eI~~~---------~----------------------------- 190 (666)
=.||++|.+|+..++..-... |
T Consensus 326 ~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 326 LEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTR 405 (1233)
T ss_pred hhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 139999999988765322110 0
Q ss_pred -----------------CC-------CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh
Q 005975 191 -----------------SV-------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (666)
Q Consensus 191 -----------------~~-------d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~L 246 (666)
.. ....||..+-.++.+..--.|.-|+.-+.+++...|+.+.+++|.++|+|...+
T Consensus 406 ~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l 485 (1233)
T KOG1824|consen 406 PVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSL 485 (1233)
T ss_pred CCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhc
Confidence 00 012344444444443222244445555555555555555555555555555555
Q ss_pred c--------------------------------------------CCcHHHHHHHHHHHHHHHHhhCCC--CCCC----C
Q 005975 247 S--------------------------------------------DKEEKIRVVARETNEELRAIKADP--ADGF----D 276 (666)
Q Consensus 247 s--------------------------------------------d~~~eIR~~A~~~n~~L~~~i~~~--~~~~----d 276 (666)
. ++-..|-..|-.+-.++.+.+... +..+ +
T Consensus 486 ~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 486 NDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred CCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 4 444444444444445555555431 2223 3
Q ss_pred hHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----
Q 005975 277 VGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD---- 350 (666)
Q Consensus 277 l~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~---- 350 (666)
++.+.....+.|. +.+.++|++|+.-++++....++.....++..+|.+++.|..+-. |..+...+..|...
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiT--Rl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEIT--RLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhH--HHHHHHHHHHHHhcccee
Confidence 5777777777775 567889999999999999999999999999999999999986543 44566667777632
Q ss_pred --cchHHHHHHHHHhhccccchhhhh----HHHHHHHHHhccCChHHHHHHHHHh--hcccCChHHHHHHHHHHHHHhcc
Q 005975 351 --LQHFRQLVVFLVHNFRVDNSLLEK----RGALIIRRLCVLLDAERVYRELSTI--LEGEADLDFACTMVQALNLILLT 422 (666)
Q Consensus 351 --~~~F~~fm~~LL~lf~~d~~lLe~----Rg~~IIR~Lc~~L~~E~Iy~~la~i--L~~~~dl~F~~~mVq~Ln~iLLT 422 (666)
...+.+.+..+...+.++.+-+.- --+-++.+....+++|.+=..+.++ |..|.|+..++..|..|.+.++.
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777555332221 1223677778888886555555555 23568999998888888877765
Q ss_pred ch
Q 005975 423 SS 424 (666)
Q Consensus 423 s~ 424 (666)
-|
T Consensus 724 ~p 725 (1233)
T KOG1824|consen 724 QP 725 (1233)
T ss_pred cc
Confidence 43
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1e-07 Score=108.35 Aligned_cols=292 Identities=16% Similarity=0.140 Sum_probs=209.3
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
++..+|.+.+.|..+|++-|..++=...-+.. -....+.++.++-++++.++++|++--||..+.-++++..+.+....
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~ 441 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI 441 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc
Confidence 56788888888889999998877655554444 44456788999999999999999999999999999999988776420
Q ss_pred -------------------------------------------C--------CCHHHHHHHHHHhcCCCC---HHHHHHH
Q 005975 191 -------------------------------------------S--------VDYGRMAEILVQRAASPD---EFTRLTA 216 (666)
Q Consensus 191 -------------------------------------------~--------~d~~~iI~iLl~~~~s~d---~~irl~A 216 (666)
. .-|+.||.-|++-....| .-.|..|
T Consensus 442 ~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred ccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 0 136778888887766543 4578888
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhhh----h-----cCCc----HHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHH
Q 005975 217 ITWINEFVKLGGDQLVPYYADILGAILPC----I-----SDKE----EKIRVVARETNEELRAIKADPADGFDVGPILSI 283 (666)
Q Consensus 217 l~WL~~~i~l~~~~l~pylp~lL~~LL~~----L-----sd~~----~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~ 283 (666)
-+.+.++++.++.+..|-+-++.+.++.- | ++++ .++...-+.+.+...+-+.. ...-+-+.+++.
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~l 600 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGL 600 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHH
Confidence 89999999999998888777777777662 2 2222 12333333333444443332 112234678888
Q ss_pred HHHhcCC-CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhh--c---cchHHH
Q 005975 284 ATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAK--D---LQHFRQ 356 (666)
Q Consensus 284 L~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~eVv~~~l~lLa~Is~--~---~~~F~~ 356 (666)
+.+.|++ .+-.+-+.|+..++.+++..+.++..|.+.+.|+|+..|+.-. -.|-..+..+.++++. + -.|=+.
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~ 680 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDE 680 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888877 4455789999999999999999999999999999999996655 4566677788888882 1 245677
Q ss_pred HHHHHHhhcccc--chhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc-cCC-hHHHHHHHHHHHHHh
Q 005975 357 LVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDAERVYRELSTILEG-EAD-LDFACTMVQALNLIL 420 (666)
Q Consensus 357 fm~~LL~lf~~d--~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~-~~d-l~F~~~mVq~Ln~iL 420 (666)
+|..|++.+.+. ++-++. .|...|++|=.. +.| .+++++++-+|+.+-
T Consensus 681 ~mt~Lvq~Lss~~~hR~vKP----------------~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNLHRNVKP----------------AILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHccCccccccccc----------------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 899999988766 333331 266666666322 222 567777788887776
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.17 E-value=2e-08 Score=113.19 Aligned_cols=372 Identities=15% Similarity=0.190 Sum_probs=245.5
Q ss_pred hhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 005975 22 LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (666)
Q Consensus 22 ~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlK 101 (666)
+|-.+-+|+..++..|=.|+.|....||-.++.++..+++.+.......|+++|..|.+.+... ++..|.+++|
T Consensus 543 ~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h------rgk~laafLk 616 (1172)
T KOG0213|consen 543 SGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH------RGKELAAFLK 616 (1172)
T ss_pred hcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc------cChHHHHHHH
Confidence 4556678999999999999999999999999999999999888777788999999999877644 2344666777
Q ss_pred Hhhcc-------cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh----hhhchHHHHHHHH--HhcCCC-
Q 005975 102 DIVTE-------SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID----MLGFLPDFLDGLF--NMLSDS- 167 (666)
Q Consensus 102 DIv~e-------~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~----Li~yLp~fL~gLf--~lLsD~- 167 (666)
.+.-- ...+.....+-.+..-+.++|...++-++.-+...++.-+.+ -.+.+|.|+..-. ++..|-
T Consensus 617 Aigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr 696 (1172)
T KOG0213|consen 617 AIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRR 696 (1172)
T ss_pred HHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhcccc
Confidence 65432 223334445566666678899999988888777777665543 1345677766554 344442
Q ss_pred -ChhHHHH---------HHHHHHHHHHHhhcCCC-------------------CCH-----HHHHHHHHHhcCCCCHHHH
Q 005975 168 -SHEIRQQ---------ADSALWEFLQEIKNSPS-------------------VDY-----GRMAEILVQRAASPDEFTR 213 (666)
Q Consensus 168 -~~eVR~~---------A~~~L~~fL~eI~~~~~-------------------~d~-----~~iI~iLl~~~~s~d~~ir 213 (666)
.+.+-.. +...+++.+.+.+..+. .|+ +.++.-++...+.++.+..
T Consensus 697 ~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~ 776 (1172)
T KOG0213|consen 697 NYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS 776 (1172)
T ss_pred chhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh
Confidence 1111111 11222223333322211 111 2233333333333322211
Q ss_pred HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcH
Q 005975 214 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWE 293 (666)
Q Consensus 214 l~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~ 293 (666)
..+.-+...+...+..+.||+|.|...+|..|....+.+|..|.+....+...+..-++.--++.+=.+|-+.+..+..
T Consensus 777 -vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeyp 855 (1172)
T KOG0213|consen 777 -VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYP 855 (1172)
T ss_pred -hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccH
Confidence 0111222333444667899999999999999999999999999998888766654322222233344578889998888
Q ss_pred HHHHHHHHHHHHHHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH------HHHHHHHHhhcc
Q 005975 294 ATRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF------RQLVVFLVHNFR 366 (666)
Q Consensus 294 ~tR~aaL~WL~~L~~~~-p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F------~~fm~~LL~lf~ 366 (666)
++--..|..+..+.... ..++.+-..+++|.|.+-|......|+..+..+++.|+.+...| -.+--+|+++++
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk 935 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK 935 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 88888888888888775 56789999999999999999999999999999999999654333 335557888887
Q ss_pred ccchhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005975 367 VDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (666)
Q Consensus 367 ~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (666)
..+|-......--+--+.+-++|..|..+|-+=|
T Consensus 936 ahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnL 969 (1172)
T KOG0213|consen 936 AHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNL 969 (1172)
T ss_pred HHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcc
Confidence 7766433322223344445555554444444433
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.09 E-value=6.2e-08 Score=122.10 Aligned_cols=349 Identities=14% Similarity=0.114 Sum_probs=241.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhh
Q 005975 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE 114 (666)
Q Consensus 37 VL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~ 114 (666)
++.-+.-.+..+|..||.++.++++.-.+... ..-...++.|.+++.+++..++..| ..+..+.+..-......--.-
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 33334445689999999999998753211110 0112356788888888888888777 566665541111011111234
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005975 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (666)
Q Consensus 115 fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~ 192 (666)
.||+|.+.+.+.++.+|.-++..|.++...+ .+....+ ...++.|+++|.+.++++++.|..+|..++..-
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~------ 561 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA------ 561 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc------
Confidence 6899999999999999999999999988643 2233333 257778888999999999999999999987532
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-ccc---chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVP---YYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~-l~p---ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
| ...++.++.-+.+.++.++..++.-+..++...... ... -..+.+|.|...+.+.++++++.|..+...+...-
T Consensus 562 d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 562 D-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred c-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 1 234566777788888888888888777776654321 110 02367888899999999999999998876664321
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-HHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-TEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p-~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
.+..+.+-....++.+...+.+.+.++|..+-..|..+..... +....+. .+.+|.|++.|++++.+|+..++..|+.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 1101112224667788888888888889888888898886433 3333333 4589999999999999999999999999
Q ss_pred Hhhcc---chH--HHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHH
Q 005975 347 IAKDL---QHF--RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVY 393 (666)
Q Consensus 347 Is~~~---~~F--~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy 393 (666)
|.++. ..+ ...+..|.++++++..-.++-....+.+||..-+.+.++
T Consensus 721 Ll~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~ 772 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL 772 (2102)
T ss_pred HHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH
Confidence 99532 112 246788888887776555555677999999998876644
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.08 E-value=6.1e-09 Score=105.75 Aligned_cols=191 Identities=21% Similarity=0.266 Sum_probs=132.7
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-----chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-----DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp-----~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
++.+.+.|...-.+.||..|.-++.-+..+..-. ..++..++.+++.++.+.+.|....|-+.|+.++..+....
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666766667799999999998888775433 23455666666677777777777667676666666666433
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (666)
+..|-||.+.++|.++..++++..-||..|.++...+.+
T Consensus 85 -----------------------------------------~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~ 123 (228)
T PF12348_consen 85 -----------------------------------------GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIE 123 (228)
T ss_dssp -----------------------------------------GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 446889999999999999999999999999999888776
Q ss_pred hhCCCCCCCChHhH-HHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---HHHhhh--hHHHHHHHHHhcCCCCHHHHHHH
Q 005975 267 IKADPADGFDVGPI-LSIATRQLSSEWEATRIEALHWISTLLNRHR---TEVLHF--LNDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 267 ~i~~~~~~~dl~~i-l~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p---~~i~~~--l~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
.+. ....+ .+.+...+.+.++.+|..++.|+..+.+..+ ..+... ++.+.+.+.++++|++++||..+
T Consensus 124 ~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 124 SCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp TS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred HCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 543 02455 7888889999999999999999999999998 444443 58899999999999999999998
Q ss_pred HHHHHHHhh
Q 005975 341 LEVHACIAK 349 (666)
Q Consensus 341 l~lLa~Is~ 349 (666)
-.++..+.+
T Consensus 198 r~~~~~l~~ 206 (228)
T PF12348_consen 198 RECLWALYS 206 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877764
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.08 E-value=4e-09 Score=107.06 Aligned_cols=197 Identities=19% Similarity=0.227 Sum_probs=129.9
Q ss_pred hhHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccc
Q 005975 32 QIVPPVLNSF----SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES 107 (666)
Q Consensus 32 ~Il~pVL~~~----~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~ 107 (666)
+-+..+.+.| .|.||..|..|.+.+..+++.... ..+.+.+++.
T Consensus 3 ~~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~--~~~~~~~~~~------------------------------ 50 (228)
T PF12348_consen 3 YEFEEILAALEKKESESDWEERVEALQKLRSLIKGNAP--EDFPPDFVEC------------------------------ 50 (228)
T ss_dssp ---GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-------HHHHHH------------------------------
T ss_pred chHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCc--cccHHHHHHH------------------------------
Confidence 3344555566 788999999888888887764300 0001111111
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
+..+++.+...+.+.++.+-..+|..+..+....+.++-+|++.+++.|++.++|+++.||..|..+|..+++.+
T Consensus 51 ----l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~- 125 (228)
T PF12348_consen 51 ----LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC- 125 (228)
T ss_dssp ----HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred ----HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC-
Confidence 122334444444555556666677777777776777788999999999999999999999999999999998633
Q ss_pred cCCCCC-HHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---ccccc--chHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 188 NSPSVD-YGRM-AEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVP--YYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 188 ~~~~~d-~~~i-I~iLl~~~~s~d~~irl~Al~WL~~~i~l~~---~~l~p--ylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
. ...+ .+.+...+.++++.+|..++.|+..++...+ ..+-. +++.+++.+.+++.|+++++|+.|.++
T Consensus 126 -----~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~ 200 (228)
T PF12348_consen 126 -----SYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAAREC 200 (228)
T ss_dssp ------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3 3566 7888889999999999999999999998766 44433 468999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 005975 261 NEELRAIKAD 270 (666)
Q Consensus 261 n~~L~~~i~~ 270 (666)
...+++..++
T Consensus 201 ~~~l~~~~~~ 210 (228)
T PF12348_consen 201 LWALYSHFPE 210 (228)
T ss_dssp HHHHHHHH-H
T ss_pred HHHHHHHCCH
Confidence 9988877654
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=99.07 E-value=1.2e-06 Score=103.35 Aligned_cols=391 Identities=15% Similarity=0.135 Sum_probs=249.4
Q ss_pred CchHHHHHHHHHHHhHHHHhhhhhhHHHhh---hhhHHHHHhhcCCCCHH-HHHHHHHHHHHHHHHhcc-hhhhhHHHHH
Q 005975 1 MHKWYSFLFEIIVEQFLLYADLFFYSETIL---QQIVPPVLNSFSDQDSR-VRYYACEALYNIAKVVRG-DFIIFFNQIF 75 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl---~~Il~pVL~~~~D~d~r-VR~~A~eaL~nI~Kv~r~-~il~~f~eIf 75 (666)
|+-|+--+-|-|++++- .=|.....|. ..=+..+-..|..++.. +|.+....++++. .| ++ ..+|
T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt---~G~Dv----S~LF 70 (746)
T PTZ00429 1 MENFLRKARERIQRKLE---ETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMT---MGRDV----SYLF 70 (746)
T ss_pred ChhHHHHHHHHHHHHhh---cCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHH---CCCCc----hHHH
Confidence 56666677788888743 2222222221 11112233444454544 4554455555544 33 33 3456
Q ss_pred HHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchH
Q 005975 76 DALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP 154 (666)
Q Consensus 76 d~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp 154 (666)
....++++..+..+|+-. ..+-++.+ ... --.-..+..++.=+.++||.+|-.++-.+ .++...++ ++
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~----~~p-elalLaINtl~KDl~d~Np~IRaLALRtL---s~Ir~~~i---~e 139 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTAR----LQP-EKALLAVNTFLQDTTNSSPVVRALAVRTM---MCIRVSSV---LE 139 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcc----cCh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HcCCcHHH---HH
Confidence 666778888899999877 44444322 111 11234477888888899999999886544 45554444 44
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005975 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (666)
Q Consensus 155 ~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~-d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p 233 (666)
.++..+-+.+.|+++-||+.|.-|+.++-+.- |+. .-.++++.|.+.+.++|+.+...|+.-+.++.+..+..+ .
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~---pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~ 215 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD---MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-E 215 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-H
Confidence 55777888999999999999999888876532 222 234577888888899999999999999999987766442 3
Q ss_pred chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-H
Q 005975 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-T 312 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p-~ 312 (666)
.....+..++..+.+-++=-+- .+.+.+.+.. +.+.-+...+++.+..++.+.+..+.++|.+-+..+...++ +
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi---~IL~lL~~y~--P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQL---YILELLAAQR--PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHH---HHHHHHHhcC--CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 3444455555555443322111 2222232222 22333457899999999999999999999999888876653 3
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHH
Q 005975 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER 391 (666)
Q Consensus 313 ~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~ 391 (666)
.+......+-+.++.. ...+++++-.++..+..|.. ....|.+.+....-++. |..-...+.=-|+-.||..-|.+.
T Consensus 291 ~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~-Dp~yIK~~KLeIL~~Lane~Nv~~ 368 (746)
T PTZ00429 291 LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYS-DPPFVKLEKLRLLLKLVTPSVAPE 368 (746)
T ss_pred HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccC-CcHHHHHHHHHHHHHHcCcccHHH
Confidence 3333444455555544 55778888889888877774 34456554433333333 433345554448888998889889
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHhccch
Q 005975 392 VYRELSTILEGEADLDFACTMVQALNLILLTSS 424 (666)
Q Consensus 392 Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~ 424 (666)
|.++|.+-.. +.|.+|+..+|+.+..+-+.-+
T Consensus 369 IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 369 ILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh
Confidence 9988888775 5788999999998887766543
No 29
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.5e-08 Score=109.86 Aligned_cols=353 Identities=18% Similarity=0.201 Sum_probs=221.8
Q ss_pred hhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccccc
Q 005975 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQ 109 (666)
Q Consensus 32 ~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~r~~il~~-f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~ 109 (666)
.++|.+..|+. |.++.+|+-|+=+|.||+.+....--.. =...
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga----------------------------------- 153 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA----------------------------------- 153 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc-----------------------------------
Confidence 47778888885 7778888888888888875322100000 0011
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHh
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLSDSSH--EIRQQADSALWEFLQEI 186 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~sv-p~~~Li~yLp~fL~gLf~lLsD~~~--eVR~~A~~~L~~fL~eI 186 (666)
+|.+..++++++..+|.-++..+.++..= |..--.--=...+++|..++..+++ -+|+++ -+|..|++.=
T Consensus 154 ------vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t-W~LsNlcrgk 226 (514)
T KOG0166|consen 154 ------VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNAT-WTLSNLCRGK 226 (514)
T ss_pred ------hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHH-HHHHHHHcCC
Confidence 33344444444444444444444433221 1100011112347778888887775 677776 6688888632
Q ss_pred hcCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHH-HHHHHHHHHH
Q 005975 187 KNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEK-IRVVARETNE 262 (666)
Q Consensus 187 ~~~~~~d---~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~e-IR~~A~~~n~ 262 (666)
.|... ...++|+|...+++.|+++..-|+..++. ++|..+| |+. .
T Consensus 227 --~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsy-----------------------Lsdg~ne~iq~-v----- 275 (514)
T KOG0166|consen 227 --NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSY-----------------------LTDGSNEKIQM-V----- 275 (514)
T ss_pred --CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------------HhcCChHHHHH-H-----
Confidence 24443 46778888888888888888666655542 2322221 211 1
Q ss_pred HHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcC-CCCHHHHHHH
Q 005975 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALS-DPSDEVVLLV 340 (666)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~Ls-D~s~eVv~~~ 340 (666)
+. ..+++.|.+.|.+....++..||..++.++.+....-...++ +.+|.|...|+ .+.+.+++.+
T Consensus 276 -----i~--------~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 276 -----ID--------AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred -----HH--------ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 10 367788888888888889999999999988887666554443 58899999998 5556688899
Q ss_pred HHHHHHHhhcc-chHHH-----HHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHH--------HHHHHhhcccCCh
Q 005975 341 LEVHACIAKDL-QHFRQ-----LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVY--------RELSTILEGEADL 406 (666)
Q Consensus 341 l~lLa~Is~~~-~~F~~-----fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy--------~~la~iL~~~~dl 406 (666)
||+++.|+.+. .+-+. ++..|++.+.+..--+++-+...|-++|..=++|.|+ +.|.+.| .-.|.
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~ 421 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDV 421 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCCh
Confidence 99999999543 33332 6677888787665556666788999999988877554 4566666 45788
Q ss_pred HHHHHHHHHHHHHhccchhHHHHH-HHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 005975 407 DFACTMVQALNLILLTSSELSELR-DLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEE 483 (666)
Q Consensus 407 ~F~~~mVq~Ln~iLLTs~El~~lR-~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~ 483 (666)
+.+......|.+||-..+-..+.+ +.+-..++.-+|.+--+.|-. |-. -.-|+.||.||.+|-..
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~---hen---------~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS---HEN---------EEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc---ccc---------HHHHHHHHHHHHHhcCC
Confidence 889999999999988776555433 333322222333333333211 111 13489999999987543
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.01 E-value=5.5e-08 Score=122.56 Aligned_cols=349 Identities=17% Similarity=0.154 Sum_probs=249.4
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhH--HHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f--~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
...+|+++..+..++.++|.-|+-++.|++.. ..++-..+ ...++.|++++.+++..+|+-| .+|.++++.-
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~---- 561 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA---- 561 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc----
Confidence 35789999999999999999999999999852 22222222 2467888888988888887666 7777776531
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch-hhhhc---hHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGF---LPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~-~Li~y---Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
+ ..-++.+.+.+...++.++..++.-+..+.++.+. +...- -+.-++.|.+++..+++++++.|+.+|..+.
T Consensus 562 d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 562 D----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred c----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 22347777888889999999998888777554433 22211 2467888899999999999999999998887
Q ss_pred HHhhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc-ccch-HhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 184 QEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYY-ADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 184 ~eI~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l-~pyl-p~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
..=+.. ..+-..+.|+.++..+.+.+.++|..|..-|..+..-....= ..+. .+.+|.++..+.+.+.+++..|..+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 511110 011235678999999999999999998888877775333221 2222 3478889999999999999999988
Q ss_pred HHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH-H-Hhhh--hHHHHHHHHHhcCCCCHHH
Q 005975 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT-E-VLHF--LNDIFDTLLKALSDPSDEV 336 (666)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~-~-i~~~--l~~l~p~LL~~LsD~s~eV 336 (666)
...+...... ...+--...++.|.+.+.+.+...|..|...|..|..+.+. + +..+ -.+.+.+|+..|+-.+.++
T Consensus 718 LanLl~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 718 LANLLSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHHHcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 7776543211 00011135578899999988999999999999999999863 3 2232 2357788999999888777
Q ss_pred HHH--HHHHHHHHhh---ccch----HHH------HHHHHHhhccccchhhhhHHHHHHHHHhccCCh
Q 005975 337 VLL--VLEVHACIAK---DLQH----FRQ------LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 337 v~~--~l~lLa~Is~---~~~~----F~~------fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
+.. ++++|+.++. +..| |-- =+..|...+......+++|.-.|+-+||.--+.
T Consensus 797 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~ 864 (2102)
T PLN03200 797 SATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPV 864 (2102)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChh
Confidence 665 8888888772 1111 222 245565666777899999988999999987654
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.01 E-value=1.5e-06 Score=102.58 Aligned_cols=340 Identities=15% Similarity=0.121 Sum_probs=219.7
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
..+.+-|++++..+|..+|+.....+.+.++.-.+..+ -....+.|-+.|+++.+|.-| ..|.++.- .
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~ 135 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL----LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------S 135 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------H
Confidence 34556666688999999999999888887753222222 346677788899999999877 33333211 1
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
--++.+++.+.+++.+.+|+||+.++-++..+-...+. ++ .-..|++.|.+++.|+++.|...|..+|.++.+.-+.
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~- 212 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LF-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE- 212 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-cc-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-
Confidence 12677889999999999999999998888876554332 21 1113556667789999999999988888777643211
Q ss_pred CCCC-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 190 PSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 190 ~~~d-~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
..+ ....+..++..+..-++-.|...++-+.. ..|.+ -.-.-.++..+.+.+.+.++.|--.|.++.-.+....
T Consensus 213 -~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 213 -KIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred -hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence 011 13344555666666666667766665533 21211 1124578889999999999888777777654432211
Q ss_pred CCCCCCCC-hHhHH----HHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005975 269 ADPADGFD-VGPIL----SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (666)
Q Consensus 269 ~~~~~~~d-l~~il----~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~l 343 (666)
. .+ ...++ ..+. .|.+.+.++|..+|..+..+..+.|.-+.++++..|. ..+|+. .|+...+++
T Consensus 288 ~-----~~~~~~~~~rl~~pLv-~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~----~~~Dp~-yIK~~KLeI 356 (746)
T PTZ00429 288 S-----QELIERCTVRVNTALL-TLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYV----RYSDPP-FVKLEKLRL 356 (746)
T ss_pred C-----HHHHHHHHHHHHHHHH-HhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhc----ccCCcH-HHHHHHHHH
Confidence 0 01 12222 2222 2345567899999999999999999888877554433 345655 589999999
Q ss_pred HHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhc
Q 005975 344 HACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILE 401 (666)
Q Consensus 344 La~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~ 401 (666)
|.+++ ++.....++..|.+...+...-...+.-.-|.+++..++. +.+-..|.+.+.
T Consensus 357 L~~La-ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~ 415 (746)
T PTZ00429 357 LLKLV-TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVD 415 (746)
T ss_pred HHHHc-CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhc
Confidence 99999 4677888998888877544333333333345555555542 344444444443
No 32
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.96 E-value=3.1e-06 Score=93.76 Aligned_cols=328 Identities=13% Similarity=0.107 Sum_probs=223.2
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCch-hHHHHH-HHHHHHHH-----
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVK----- 101 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~-~Vr~gA-~~LdrLlK----- 101 (666)
-+++..-.++.+..+.+|.-..|+..+..|+.. ++- ..|++++..+...+.|.+| ++|..+ ..+...|+
T Consensus 92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~---Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe 168 (858)
T COG5215 92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARM---ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE 168 (858)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh---hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH
Confidence 355677789999999999999999998888753 221 3588999999888888876 666666 44444333
Q ss_pred HhhcccccccHhhhHHHHHH-hhcCCCHHHHHHHHHHHHH-hhcCCch-hhhhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005975 102 DIVTESDQFSIEEFIPLLRE-RMNVLNPYVRQFLVGWITV-LDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (666)
Q Consensus 102 DIv~e~~~f~L~~fIPlL~e-ri~~~np~vR~~alswL~~-L~svp~~-~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~ 178 (666)
|+++-++. -++....- +=...+..+|..++.++.. +.-+-+. .--..-+-|+...+..-..++.++..+|-.|
T Consensus 169 ~li~~sN~----il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 169 DLIQMSNV----ILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred HHHHHhhH----HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHH
Confidence 11111110 11111111 1123677999999988874 3222211 0011233456667777778899999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHh--cCcccccc---------------hHhHHH
Q 005975 179 LWEFLQEIKNSPSVDYGRMA-EILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPY---------------YADILG 240 (666)
Q Consensus 179 L~~fL~eI~~~~~~d~~~iI-~iLl~~~~s~d~~irl~Al~WL~~~i~l--~~~~l~py---------------lp~lL~ 240 (666)
|.++..---+--...+++.+ .+....+.+++++++..|+++++.+++- .++--..| ..+++|
T Consensus 245 l~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP 324 (858)
T COG5215 245 LNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLP 324 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHH
Confidence 99887522110001122222 2334467899999999999966555542 22212223 345888
Q ss_pred HHhhhhcCCc-------HHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChH
Q 005975 241 AILPCISDKE-------EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRT 312 (666)
Q Consensus 241 ~LL~~Lsd~~-------~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-~p~ 312 (666)
.+|+.|...+ =.+...|..|.+-+....++ .-+.+++..+.+.+.+++|..|++|...++.+.++ |..
T Consensus 325 ~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 325 ELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 8888886422 14778888888887777654 23567888999999999999999999999977666 777
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhcccc
Q 005975 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 313 ~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~d 368 (666)
-..++.++.+|.++...+|+.=-|...+.|.+++|++ ...|+...+...+.-+-+.
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc
Confidence 7889999999999999999999999999999999994 4677777777766655444
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.96 E-value=4.4e-07 Score=102.62 Aligned_cols=394 Identities=16% Similarity=0.185 Sum_probs=258.1
Q ss_pred hhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHH
Q 005975 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (666)
Q Consensus 21 ~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrL 99 (666)
+++-...+|...|+=-|-..+-|+|+..|-..-|.+.|++|.+.-.. .+...---+.+.|+=|||-. .+.+-.
T Consensus 430 klDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~------mistmrpDidn~deYVRnttarafavv 503 (1172)
T KOG0213|consen 430 KLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLAT------MISTMRPDIDNKDEYVRNTTARAFAVV 503 (1172)
T ss_pred hhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHH------HHHhhcCCcccccHHHHHHHHHHHHHH
Confidence 35566677888877666777889999999999999999998765211 11111112355678888865 333332
Q ss_pred HHHhhcccccccHhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005975 100 VKDIVTESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (666)
Q Consensus 100 lKDIv~e~~~f~L~~fIPlL~eri~~~-np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~ 178 (666)
+ +++.++.+.|+|...-.+. .|+.|...+.++.+++-..+...++|+-.+++.+-..+.|.+..||..+..+
T Consensus 504 a-------salgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAla 576 (1172)
T KOG0213|consen 504 A-------SALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALA 576 (1172)
T ss_pred H-------HHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHH
Confidence 2 2567999999999999886 8999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhcC-----------------------------------CCC--C----H-HHHHHHHHHhcCCCCHHHHHHH
Q 005975 179 LWEFLQEIKNS-----------------------------------PSV--D----Y-GRMAEILVQRAASPDEFTRLTA 216 (666)
Q Consensus 179 L~~fL~eI~~~-----------------------------------~~~--d----~-~~iI~iLl~~~~s~d~~irl~A 216 (666)
|..+.+...-- |.. + | .+++-+++.-.++||++.+...
T Consensus 577 lsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkiv 656 (1172)
T KOG0213|consen 577 LSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIV 656 (1172)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHH
Confidence 87776543210 000 1 1 4567788888899999988888
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhh---------------------------------------hhcCCcHHHHHHH
Q 005975 217 ITWINEFVKLGGDQLVPYYADILGAILP---------------------------------------CISDKEEKIRVVA 257 (666)
Q Consensus 217 l~WL~~~i~l~~~~l~pylp~lL~~LL~---------------------------------------~Lsd~~~eIR~~A 257 (666)
+.-+...+...|..=.=--.+++|.++. -+-|+.+..|.++
T Consensus 657 LKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~ 736 (1172)
T KOG0213|consen 657 LKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMV 736 (1172)
T ss_pred HHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHH
Confidence 7777766665432210001223333332 2233334455555
Q ss_pred HHHHHHHHHhhCCCCCCCC---hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH
Q 005975 258 RETNEELRAIKADPADGFD---VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD 334 (666)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~ 334 (666)
.++....+..++. .++| -+.++..+.-.|+.+....- --+.-++.+.......+.+|++++..++|..|+++++
T Consensus 737 ~etv~ri~~~lg~--~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa 813 (1172)
T KOG0213|consen 737 AETVSRIVGRLGA--ADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSA 813 (1172)
T ss_pred HHHHHHHHhcccc--ccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCCh
Confidence 5544444443332 2233 12333333333332221111 2345667777778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhh------ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh----------HHHHHHHHH
Q 005975 335 EVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA----------ERVYRELST 398 (666)
Q Consensus 335 eVv~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~----------E~Iy~~la~ 398 (666)
.||..+..+++.|+. .++...+.=.-|.+.+..+-. |.= .+|+.-+|...|. ..+...|.-
T Consensus 814 ~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeyp--EvL-gsILgAikaI~nvigm~km~pPi~dllPrltP 890 (1172)
T KOG0213|consen 814 KVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYP--EVL-GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTP 890 (1172)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccH--HHH-HHHHHHHHHHHHhccccccCCChhhhcccchH
Confidence 999999999999882 222333333334444433322 222 2455555554432 466777777
Q ss_pred hhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 005975 399 ILEGEADLDFACTMVQALNLILLTSSELSELRDLLK 434 (666)
Q Consensus 399 iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~ 434 (666)
||.+ .--......|..+..|--.++|...-|.-.|
T Consensus 891 ILkn-rheKVqen~IdLvg~IadrgpE~v~aREWMR 925 (1172)
T KOG0213|consen 891 ILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWMR 925 (1172)
T ss_pred hhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 7755 2234566888888888888888766666555
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.91 E-value=3.6e-06 Score=95.90 Aligned_cols=259 Identities=15% Similarity=0.201 Sum_probs=184.6
Q ss_pred HHHhhcCCch-hHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhh-hchHH
Q 005975 78 LCKLSADSDA-NVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPD 155 (666)
Q Consensus 78 L~kl~~D~d~-~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li-~yLp~ 155 (666)
++..+++.+. .|.-....|++++++..-. .-.+.+.|.|...+++++|.||..++.-+..+..-++.... ..=++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~---~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPD---SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 4444444443 3433337788887754322 22788999999999999999999999998887665543221 12267
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005975 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM-----AEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (666)
Q Consensus 156 fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~i-----I~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~ 230 (666)
+++.+..++.|++.+|.+.|.++|..+.+. ...++.+ +..|...+..+++.+|..+.+-+..+...+++.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-----~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH-----PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-----chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 889999999999999999999988888741 1233334 677777777778899988888777776666544
Q ss_pred cccchH--hHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCCh---HhHHHHHHHhcCCCcHHHH------HHH
Q 005975 231 LVPYYA--DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATR------IEA 299 (666)
Q Consensus 231 l~pylp--~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl---~~il~~L~~~L~~~~~~tR------~aa 299 (666)
+ .+.- ++++.++..+.++|.-++..|.+....+.. ...+..| ..+++.|...+.+...+.| ...
T Consensus 195 ~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 195 A-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred H-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 3 4433 489999999999888888888887776654 1122221 3455555555543322222 223
Q ss_pred HHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 300 L~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
+...+.++...|.++...++.++..+...+...++..+..|+++++.|++
T Consensus 270 ~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 270 MKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 36778888889999998888988888888888889999999999999995
No 35
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.86 E-value=2.5e-06 Score=94.94 Aligned_cols=328 Identities=20% Similarity=0.251 Sum_probs=213.2
Q ss_pred hhhhhHHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhcchh-----hhhHHH-HHHHHHHhhcCCc---hhHHHHH-
Q 005975 29 ILQQIVPPVLNSFSD-----QDSRVRYYACEALYNIAKVVRGDF-----IIFFNQ-IFDALCKLSADSD---ANVQSAA- 93 (666)
Q Consensus 29 yl~~Il~pVL~~~~D-----~d~rVR~~A~eaL~nI~Kv~r~~i-----l~~f~e-Ifd~L~kl~~D~d---~~Vr~gA- 93 (666)
.++.+++.++.-+.. .+...-..++++++++.+...... ..|+.+ +++.+.+.+.+.. .+.....
T Consensus 35 i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L 114 (415)
T PF12460_consen 35 ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVL 114 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHH
Confidence 355566665555532 256677777889988866543222 345554 7777776553221 1111112
Q ss_pred HHHHHHHHHhhccccccc----HhhhHHHHH-----Hhhc-CCC---HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH
Q 005975 94 HLLDRLVKDIVTESDQFS----IEEFIPLLR-----ERMN-VLN---PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (666)
Q Consensus 94 ~~LdrLlKDIv~e~~~f~----L~~fIPlL~-----eri~-~~n---p~vR~~alswL~~L~svp~~~Li~yLp~fL~gL 160 (666)
+.+.+++.-|+...+.-. ++.+...+. ..+. ..+ +.-+...+-.-..+..+++.--++...+++..+
T Consensus 115 ~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l 194 (415)
T PF12460_consen 115 ELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSL 194 (415)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHH
Confidence 456666776666543211 444444443 1111 111 123344444456677777766666888899999
Q ss_pred HHhcCCC-ChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhc-CCCCHH---HHHHHHHHHHHHHHhcCcccccch
Q 005975 161 FNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPDEF---TRLTAITWINEFVKLGGDQLVPYY 235 (666)
Q Consensus 161 f~lLsD~-~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~-~s~d~~---irl~Al~WL~~~i~l~~~~l~pyl 235 (666)
.++.... ++.+|.++++++..++-..+. +-+++++++.+.... ...++. .......|+..-.-+-+. |..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~---~~~ 269 (415)
T PF12460_consen 195 LNLALSSEDEFSRLAALQLLASLVNKWPD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH---PLA 269 (415)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC---chH
Confidence 9887554 588999999988888854322 225778888887776 333333 345566799765555443 556
Q ss_pred HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC---CCC---------CChHhHHHHHHHhcCCCcHHHHHHHHHHH
Q 005975 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADP---ADG---------FDVGPILSIATRQLSSEWEATRIEALHWI 303 (666)
Q Consensus 236 p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~---~~~---------~dl~~il~~L~~~L~~~~~~tR~aaL~WL 303 (666)
.+++..++..+++ +++...|.++.+-++.-..+. ... .-|..+++.+.+.+...+...|...+..+
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 7777778888887 777888888777665442211 111 12578899999999877777999999999
Q ss_pred HHHHhhChHHH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-c----chHHHHHHHHHh
Q 005975 304 STLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-L----QHFRQLVVFLVH 363 (666)
Q Consensus 304 ~~L~~~~p~~i-~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-~----~~F~~fm~~LL~ 363 (666)
..+.++.|.++ .+++++++|.|+.+|+-++++|+..++++|..+..+ . +|.+.++..|++
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999885 589999999999999999999999999999999843 2 344555555544
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.86 E-value=1.8e-07 Score=103.95 Aligned_cols=369 Identities=14% Similarity=0.141 Sum_probs=229.5
Q ss_pred hhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 005975 22 LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (666)
Q Consensus 22 ~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlK 101 (666)
+|...-+|+.-++.-+-.|+.|....||--++.+|..+++.+.......|+++|..|.+.++.. ++..|..++|
T Consensus 348 lG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h------rgk~l~sfLk 421 (975)
T COG5181 348 LGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH------RGKELVSFLK 421 (975)
T ss_pred hCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc------CCchHHHHHH
Confidence 4555678999999999999999999999999999999999888777888999999999877643 2334666666
Q ss_pred Hhhc-------ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh----chHHHHHHHH--HhcCC--
Q 005975 102 DIVT-------ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG----FLPDFLDGLF--NMLSD-- 166 (666)
Q Consensus 102 DIv~-------e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~----yLp~fL~gLf--~lLsD-- 166 (666)
.... |-........+..+..-+.+++..-+.-++--...-+++-+.+=-- ..|+|+..-. ++.+|
T Consensus 422 A~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~ 501 (975)
T COG5181 422 AMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRR 501 (975)
T ss_pred HhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhccccc
Confidence 5421 1123345556667777777777766665555444444444333222 3333333322 23333
Q ss_pred -------------------------------CChhHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHhcCCCCHHH
Q 005975 167 -------------------------------SSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFT 212 (666)
Q Consensus 167 -------------------------------~~~eVR~~A~~~L~~fL~eI~~~~~~d---~~~iI~iLl~~~~s~d~~i 212 (666)
+..--|+++..+.++....++.. ++| -+.++.-++...+.++...
T Consensus 502 ~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~-~~dErleerl~d~il~Afqeq~~t~ 580 (975)
T COG5181 502 SYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL-GFDERLEERLYDSILNAFQEQDTTV 580 (975)
T ss_pred ccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHHhccccc
Confidence 33333333333333333222210 011 0112222222222222111
Q ss_pred HH--HHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC
Q 005975 213 RL--TAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 290 (666)
Q Consensus 213 rl--~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~ 290 (666)
.+ .+.... .-..+....||+|.|+..+|..|....|++|..|.+..+.+...++.-++.-.+..+=.+|-+.+..
T Consensus 581 ~~il~~f~tv---~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge 657 (975)
T COG5181 581 GLILPCFSTV---LVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGE 657 (975)
T ss_pred cEEEecccce---eeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc
Confidence 10 000000 0001234579999999999999999999999999999998877766433322234444678889988
Q ss_pred CcHHHHHHHHHHHHHHHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-h-----HHHHHHHHHh
Q 005975 291 EWEATRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-H-----FRQLVVFLVH 363 (666)
Q Consensus 291 ~~~~tR~aaL~WL~~L~~~~-p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~-~-----F~~fm~~LL~ 363 (666)
+..++--..+..+..+.... -..|.|-..+++|.|.+-|......|+..+..+++.|+.+.+ | .-.+--+|++
T Consensus 658 ~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd 737 (975)
T COG5181 658 DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVD 737 (975)
T ss_pred ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 88888888888888887764 456889999999999999999999999999999999996432 2 3335556777
Q ss_pred hccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005975 364 NFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (666)
Q Consensus 364 lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (666)
+++.-+|-...-++--+--+....+|..|.-+|-+=|
T Consensus 738 ~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnL 774 (975)
T COG5181 738 SLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNL 774 (975)
T ss_pred HHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcc
Confidence 7766655433333333333444455544444444333
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=9.1e-07 Score=100.75 Aligned_cols=330 Identities=17% Similarity=0.255 Sum_probs=224.3
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhH--HHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f--~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.+.+.+.+.+++..+++.||..||..+.+++..-.+ ..... +++++.+..++.|+|.+|.+.| .+|.++++ .
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~----~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS----H 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC----C
Confidence 577888899999999999999999998887643222 22222 6889999999999999998888 66666554 1
Q ss_pred cccccHhhh-----HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH--HHHHHHHhcCCCChhHHHHHHHHH
Q 005975 107 SDQFSIEEF-----IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD--FLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 107 ~~~f~L~~f-----IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~--fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
. ..++.+ ++.|...+...|+-+|.-+.+.+-.+.+.... ...+.-+ +++.+++.+.|.+.-||..|.++|
T Consensus 150 ~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~-~~~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 150 P--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE-AAEAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred c--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH-HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 1 123333 78888888877888998888888777766554 3455554 899999999998888999999988
Q ss_pred HHHHHHhhcCCCCCH---HHHHHHHHHhcCCC--CH-HHHHH---HHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc
Q 005975 180 WEFLQEIKNSPSVDY---GRMAEILVQRAASP--DE-FTRLT---AITWINEFVKLGGDQLVPYYADILGAILPCISDKE 250 (666)
Q Consensus 180 ~~fL~eI~~~~~~d~---~~iI~iLl~~~~s~--d~-~irl~---Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~ 250 (666)
.++.+ .. ...+| .++++.|...+.+. |+ ..... .+.....+....+..+..-.|.++..+..++...+
T Consensus 227 ~~La~--~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 227 SELAE--TP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHc--Ch-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 88886 11 11111 34555555555443 23 11111 12333444444566666778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-----CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH----HHhhhhHHH
Q 005975 251 EKIRVVARETNEELRAIKA-----DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT----EVLHFLNDI 321 (666)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~-----~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~----~i~~~l~~l 321 (666)
+..+..|-++.+.+-.... ....+-.+..++........+...+.|+++++.+..+....++ ++.......
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w 383 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW 383 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 9999999988775532110 0011223456777777777777888999999999988665433 344333333
Q ss_pred HH---------HHHHhcCCCCHHHHHHHHHHHHHHhhcc---ch---HHHHHHHHHhhccccch
Q 005975 322 FD---------TLLKALSDPSDEVVLLVLEVHACIAKDL---QH---FRQLVVFLVHNFRVDNS 370 (666)
Q Consensus 322 ~p---------~LL~~LsD~s~eVv~~~l~lLa~Is~~~---~~---F~~fm~~LL~lf~~d~~ 370 (666)
|. .+++.++.|=+|++..++.+|..++... .. +..|++-|+++-....|
T Consensus 384 ~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 384 YESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred HHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence 32 5667778888999999999999998421 22 23377777776644433
No 38
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.79 E-value=1.9e-05 Score=87.73 Aligned_cols=340 Identities=16% Similarity=0.157 Sum_probs=214.1
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH-HhhcCCchhHHHHH-HHHHHHHH---
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADSDANVQSAA-HLLDRLVK--- 101 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~-kl~~D~d~~Vr~gA-~~LdrLlK--- 101 (666)
+...++++.-+...-+.+|..+..+|--.+-.|.-..-..+-+|...-+-+|. ....++...|+-.| +....+++
T Consensus 216 E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEei 295 (858)
T COG5215 216 EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEI 295 (858)
T ss_pred hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 34456778888888888999999888666655543222333344444333333 34445544555555 43333332
Q ss_pred -------------------------Hhhccc---------------------------------ccccHhhhHHHHHHhh
Q 005975 102 -------------------------DIVTES---------------------------------DQFSIEEFIPLLRERM 123 (666)
Q Consensus 102 -------------------------DIv~e~---------------------------------~~f~L~~fIPlL~eri 123 (666)
|++.+. +..-+.-....+-+-|
T Consensus 296 d~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni 375 (858)
T COG5215 296 DGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNI 375 (858)
T ss_pred hhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhc
Confidence 222110 0111122222333344
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc--CCCCCHHHHHHH
Q 005975 124 NVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEI 200 (666)
Q Consensus 124 ~~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~--~~~~d~~~iI~i 200 (666)
+.+++.-|..++-....+..-|..+ +..+.|+.++|+.++++|+.--|+..+.-|++++...+.. .|..|+..++..
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa 455 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSA 455 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHH
Confidence 5666777776666665554445544 5679999999999999999999999988998888766643 345577777776
Q ss_pred HHHhcCCCCHHHHHHHHHHHH-HHHH-hc------CcccccchHhHHHHHhhhh--cCCcHHHHHHHHHHHHHHHHhhCC
Q 005975 201 LVQRAASPDEFTRLTAITWIN-EFVK-LG------GDQLVPYYADILGAILPCI--SDKEEKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 201 Ll~~~~s~d~~irl~Al~WL~-~~i~-l~------~~~l~pylp~lL~~LL~~L--sd~~~eIR~~A~~~n~~L~~~i~~ 270 (666)
.+.-+.+ .+. +.+++.|-. .++. ++ +.-+.+|.+.|+.+++..- .+.+...|..+-.+.+++.....+
T Consensus 456 ~liGl~D-~p~-~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 456 SLIGLMD-CPF-RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HHhhhhc-cch-HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 6665443 233 344555543 2333 22 4557899999999999844 467778888888887776544332
Q ss_pred C-----------------------C----------------------------CCC---Ch-HhHHHHHHHhcCCCc-HH
Q 005975 271 P-----------------------A----------------------------DGF---DV-GPILSIATRQLSSEW-EA 294 (666)
Q Consensus 271 ~-----------------------~----------------------------~~~---dl-~~il~~L~~~L~~~~-~~ 294 (666)
. + .+- +. +.+++.+.+.+++.. .-
T Consensus 534 ~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~ 613 (858)
T COG5215 534 AVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTT 613 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCch
Confidence 0 0 001 11 234444444444432 12
Q ss_pred HHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--c---cchHHHHHHHHHhhcccc
Q 005975 295 TRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--D---LQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~---~~~F~~fm~~LL~lf~~d 368 (666)
.-..++..++.+.....+++..|.++++|+|.+.|+-.+--|-..+..+.++++. + ..|=+.||..|.+++++.
T Consensus 614 ~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 614 AFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 2345566777888888889999999999999999987777788888899999983 2 244567999999999766
No 39
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=7.6e-07 Score=104.27 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=206.5
Q ss_pred HHHHHHHHhHH-HHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcch--hhhhHHHHHHHHHHhhc
Q 005975 7 FLFEIIVEQFL-LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD--FIIFFNQIFDALCKLSA 83 (666)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~--il~~f~eIfd~L~kl~~ 83 (666)
..+..+++.+| ++.++|+ ...-....+++..-++|..+++|++++.-........+.+ .-..-+.+++.+-.++.
T Consensus 331 ~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred HHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh
Confidence 34555666667 7777777 5666778999999999999999998876554444332211 11234567888889999
Q ss_pred CCchhHHHHHHHHHHHHHHhhc-cc---------------------------------------ccccHhhhHHHHHHhh
Q 005975 84 DSDANVQSAAHLLDRLVKDIVT-ES---------------------------------------DQFSIEEFIPLLRERM 123 (666)
Q Consensus 84 D~d~~Vr~gA~~LdrLlKDIv~-e~---------------------------------------~~f~L~~fIPlL~eri 123 (666)
|+...||.+..-.--.+..+.. +. -.-..+..+|.+.+..
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~ 488 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA 488 (759)
T ss_pred cccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc
Confidence 9999999876311001101110 00 0222345555555555
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005975 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG-LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILV 202 (666)
Q Consensus 124 ~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~g-Lf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl 202 (666)
.+.++++|.-++..+-.+..--+ ..++.+.+.. +-.++.|...+||++|..++..++...+ ...+...+++.++
T Consensus 489 ~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L 563 (759)
T KOG0211|consen 489 EDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLL 563 (759)
T ss_pred cchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHH
Confidence 55555666655555555544333 2223333333 3467888888999999999999998886 4567788999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHH
Q 005975 203 QRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 282 (666)
Q Consensus 203 ~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~ 282 (666)
....+++...|++.+.-+.+++.+.|..+. ...++|.+.....|..++||-.+.+....+.+.+.. ..+=+.+.+
T Consensus 564 ~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~---~~~~~~v~p 638 (759)
T KOG0211|consen 564 AMDLQDNYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE---SVRDEEVLP 638 (759)
T ss_pred HHhcCcccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch---HHHHHHHHH
Confidence 998888899999999999999999887765 788899999999999999999999988888776643 122256667
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhh
Q 005975 283 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 316 (666)
Q Consensus 283 ~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~ 316 (666)
.+.....|++..+|..|...+..+..........
T Consensus 639 ll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d 672 (759)
T KOG0211|consen 639 LLETLSSDQELDVRYRAILAFGSIELSRLESSLD 672 (759)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHHHhhhHH
Confidence 7777777888899999998888776665444333
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.4e-05 Score=93.96 Aligned_cols=429 Identities=16% Similarity=0.121 Sum_probs=270.1
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccccc
Q 005975 34 VPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 34 l~pVL~~~-~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~ 111 (666)
++++...| .|..+.||.+++.-+++++++...+. -...+.+.+..+..|...+||.+| +.+..+.+ +....+ --
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~--~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~-l~~~~~-d~ 313 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI--VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLD-LLDDDD-DV 313 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH--HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHH-hcCCch-hh
Confidence 34444444 79999999999999999999876543 345667777788899999999999 66665544 222111 12
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~ 191 (666)
...+.|.+.+...+.++++|+..-.|..-+.+.-+. -..-++..+.....++|..-++|.++..-...|.......+.
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 567899999999999999999999998877775555 234455566677789999999999988877777765543333
Q ss_pred C--CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 192 V--DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 192 ~--d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
. -...++|.+-..+.+.++.+|.....-+.....+.| .-.=++.++|..+..+.|..+++|..-.... .....+.
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~l-s~~~~v~ 468 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKL-SLLEEVN 468 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHH-HHHHhcc
Confidence 3 346678999999999999888755444433332322 1222567788888889999999986554322 1122222
Q ss_pred CC-CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 270 DP-ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 270 ~~-~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+. +-..--+..++.+.+.-.+..|..|.+.+..+-.++.....+++ -+++-+.+..-|-|...+|+..+...+...+
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--DEKLAELLRTWLPDHVYSIREAAARNLPALV 546 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHH
Confidence 11 11122357777777777777899999999888877776653332 2234455556688888899998888777777
Q ss_pred h---ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc---c--CChHHHHHHHHHHHHHh
Q 005975 349 K---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG---E--ADLDFACTMVQALNLIL 420 (666)
Q Consensus 349 ~---~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~---~--~dl~F~~~mVq~Ln~iL 420 (666)
. .+-+=...+..++.+..+++-+....-.+=|.-+-..++.|-..+.|-.++.. + .+.+| .....|-.++
T Consensus 547 ~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~--nvak~L~~i~ 624 (759)
T KOG0211|consen 547 ETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRI--NVAKHLPKIL 624 (759)
T ss_pred HHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhh--hHHHHHHHHH
Confidence 2 22233457777777776652222222222344445555666666666655543 1 35666 4444444332
Q ss_pred ---ccchhHHHHHHHHHhcc-CCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHH
Q 005975 421 ---LTSSELSELRDLLKKSL-VNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKL 496 (666)
Q Consensus 421 ---LTs~El~~lR~~L~~~l-~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~e~~~~~l~q~d~L 496 (666)
..+.-=..++..|-... ++.-++..|..+ ++..+.++..| ..+.+.+.+|.+.+
T Consensus 625 ~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~----------a~~~i~l~~~~------------~~~d~~~~~~~~a~ 682 (759)
T KOG0211|consen 625 KLLDESVRDEEVLPLLETLSSDQELDVRYRAIL----------AFGSIELSRLE------------SSLDVRDKKQLIAF 682 (759)
T ss_pred hhcchHHHHHHHHHHHHHhccCcccchhHHHHH----------HHHHHHHHHHh------------hhHHHHHHHHHHHH
Confidence 22222223344443311 333445555544 55666555553 34455566665554
Q ss_pred H
Q 005975 497 I 497 (666)
Q Consensus 497 v 497 (666)
-
T Consensus 683 ~ 683 (759)
T KOG0211|consen 683 L 683 (759)
T ss_pred H
Confidence 3
No 41
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=8.5e-06 Score=86.43 Aligned_cols=357 Identities=18% Similarity=0.185 Sum_probs=209.6
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--chh-----h-hhHHH-----------HHHHHHHhhcCC---ch
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDF-----I-IFFNQ-----------IFDALCKLSADS---DA 87 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r--~~i-----l-~~f~e-----------Ifd~L~kl~~D~---d~ 87 (666)
-.....||+..++.+|+.+.-+||+++.|++-... +-+ + +-+.+ -...+..+++=. -.
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence 35567899999999999999999999999763321 100 0 00000 011122222211 12
Q ss_pred hHHHHH-HHHHHHHH--Hhhcc---------------c-ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh--cCCc
Q 005975 88 NVQSAA-HLLDRLVK--DIVTE---------------S-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD--SVPD 146 (666)
Q Consensus 88 ~Vr~gA-~~LdrLlK--DIv~e---------------~-~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~--svp~ 146 (666)
-.+.|| +-+.|+.| ||-.. + ..---.-=+|.|.+...+.|+.+|++++..|.++. ....
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 334455 44555443 22211 0 00111223788888999999999999999999763 3444
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHH
Q 005975 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVK 225 (666)
Q Consensus 147 ~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d-~~irl~Al~WL~~~i~ 225 (666)
.-+..-=|.+++.|..++.|+++.|+-.|..+|+.+...-.-.-.+--..-+|.+++-++++- +.+.. ...-|+.+.-
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plila-sVaCIrnisi 321 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILA-SVACIRNISI 321 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHH-HHHHHhhccc
Confidence 557778899999999999999999998888888776532211000101223455566566543 33321 2222332222
Q ss_pred hcCcccccchHhHHHHHhhhhcCCc-HHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc--HHHHHHHHHH
Q 005975 226 LGGDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHW 302 (666)
Q Consensus 226 l~~~~l~pylp~lL~~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~--~~tR~aaL~W 302 (666)
.+.....--=..++.-+...+...+ +||+-.|..+...|..........+-=...++.+.+.+.|.. ...++++--.
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 2222211111233444555666554 558877777766665432211000111244566777666554 4457777777
Q ss_pred HHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 005975 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 382 (666)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~ 382 (666)
...+.+...+.+.. .+++|.|++-+.|.+.||+-.+...|..+|++.+++.+|++.. |++.-.-+| +.+|-
T Consensus 402 ~Lal~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEaw------d~P~~gi~g-~L~Rf 472 (550)
T KOG4224|consen 402 QLALNDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAW------DHPVQGIQG-RLARF 472 (550)
T ss_pred HHHhccccHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHh------cCcchhHHH-HHHHH
Confidence 77777776666554 3689999999999999999999999999999988998887764 223222232 23333
Q ss_pred HhccCChHHHHHHHHHh
Q 005975 383 LCVLLDAERVYRELSTI 399 (666)
Q Consensus 383 Lc~~L~~E~Iy~~la~i 399 (666)
+. +-|.-|+.++.|
T Consensus 473 l~---S~~~tf~hia~w 486 (550)
T KOG4224|consen 473 LA---SHELTFRHIARW 486 (550)
T ss_pred Hh---hhHHHHHHHHHH
Confidence 32 225567777766
No 42
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.47 E-value=0.00013 Score=81.94 Aligned_cols=301 Identities=16% Similarity=0.152 Sum_probs=225.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc----h--------------------------------------hh
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----D--------------------------------------FI 68 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~----~--------------------------------------il 68 (666)
.+++..|+..+.|+..-.|+.+++....|+..... + .-
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k 599 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK 599 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC
Confidence 56888899999999888888888876665422110 0 12
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccccc-HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 005975 69 IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD 146 (666)
Q Consensus 69 ~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~-L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~ 146 (666)
+|...|.....+++..+.++||.-| .+...+.+ +.+.++++. +.++=-.|-|.+....|.+=-+++..|..+.++.+
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 4667888888899999999999877 66666666 444555433 67777888999999999999999999998888877
Q ss_pred hh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC----CCHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005975 147 ID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS----VDYGRMAEILVQRAASPDEFTRLTAITWIN 221 (666)
Q Consensus 147 ~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~----~d~~~iI~iLl~~~~s~d~~irl~Al~WL~ 221 (666)
.. |.+-...+++.|.-+|...+..|...+...++.... +.|. ..|-.|.=-|++.+.+-+.++|..|-+-+.
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~---~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM---NSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh---cCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 54 556666677777667777777777766665555554 3332 145667777788888889999999888776
Q ss_pred HHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005975 222 EFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALH 301 (666)
Q Consensus 222 ~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~ 301 (666)
-+...-|. .++|..++.+|...+..-|....-+..-..+..+ .=.++++|......+...++-..|.
T Consensus 756 ~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 756 CISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred hHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHH
Confidence 66654332 3678888988887777666433322221111111 1378899999888888889999999
Q ss_pred HHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 302 WISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 302 WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
.+.++.+..++.-..|...+.|.|-..|.|.++.=|+.+..++..++
T Consensus 823 am~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 823 AMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998
No 43
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.42 E-value=0.0001 Score=79.20 Aligned_cols=248 Identities=21% Similarity=0.178 Sum_probs=184.3
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f 110 (666)
...+.++..+.|++..+|..|..++..+.. .+.++.|.+++.|.++.||..| ..|.. .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~-----------~ 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGE-----------L 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHc-----------c
Confidence 567888999999999999999888655532 4778889999999999999988 43222 2
Q ss_pred cHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh------------hHHHHHHH
Q 005975 111 SIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH------------EIRQQADS 177 (666)
Q Consensus 111 ~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~------------eVR~~A~~ 177 (666)
..+.-+|.+.+.+. +.|..||..+...+..+..... +++|+..+.|... .+|.++..
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 34556777777777 6999999999888876543221 6677777877662 46766655
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHH
Q 005975 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (666)
Q Consensus 178 ~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A 257 (666)
.|..+- -+..++.+...+.+.+..+|..|..-+..+.... ..+.+.+.+.+++.+..+|..+
T Consensus 172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 544443 3567888899999999999998877665433221 6778889999999999999888
Q ss_pred HHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 005975 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv 337 (666)
..+.+ .......+..+...+.+.++..+..+-.|+. .-....-.+.+...+.|.+..++
T Consensus 234 ~~~l~-----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~ 292 (335)
T COG1413 234 LLALG-----------EIGDEEAVDALAKALEDEDVILALLAAAALG----------ALDLAEAALPLLLLLIDEANAVR 292 (335)
T ss_pred HHHhc-----------ccCcchhHHHHHHHHhccchHHHHHHHHHhc----------ccCchhhHHHHHHHhhcchhhHH
Confidence 77652 2345688889999999988888888887777 11122234457778889999999
Q ss_pred HHHHHHHHHHhh
Q 005975 338 LLVLEVHACIAK 349 (666)
Q Consensus 338 ~~~l~lLa~Is~ 349 (666)
..+...+..+..
T Consensus 293 ~~~~~~l~~~~~ 304 (335)
T COG1413 293 LEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHHhhcc
Confidence 988888888874
No 44
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.38 E-value=5.2e-05 Score=84.12 Aligned_cols=242 Identities=15% Similarity=0.029 Sum_probs=167.7
Q ss_pred hhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc
Q 005975 31 QQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (666)
Q Consensus 31 ~~Il~pVL~~~-~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~ 108 (666)
+..++.++..| .|.+..||..|+-++... +. ...++.|++.+.|.+++|+.++ ..|..+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~------~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ------ED----ALDLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc------CC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 34578888999 588898888765554211 11 2348899999999999999888 554432
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
..+...+.|...+.+.+|++|..++..+.... .+-.+.|...+.|+++.||..|..+|+.+-.
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 34566777888889999999999987776522 2234567778899999999999888877653
Q ss_pred CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
...++.|...+.+.|+.+|..|+.-+..+ +. +.-+..++......+...+..+.... ...
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~l---G~-------~~A~~~l~~~~~~~g~~~~~~l~~~l----al~ 236 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLA---GS-------RLAWGVCRRFQVLEGGPHRQRLLVLL----AVA 236 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHc---CC-------HhHHHHHHHHHhccCccHHHHHHHHH----HhC
Confidence 34456677778999999999998877432 21 33344445434444433333222222 111
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
.. ...++.|...+.++. +|.+++..++.+-. +..++.|+..++|+. +...+-+.+++|.
T Consensus 237 ~~-------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 237 GG-------PDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred Cc-------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 21 377788888887754 89999988886544 336778889888776 8999999999999
Q ss_pred h
Q 005975 349 K 349 (666)
Q Consensus 349 ~ 349 (666)
.
T Consensus 296 G 296 (410)
T TIGR02270 296 G 296 (410)
T ss_pred C
Confidence 4
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.0017 Score=77.40 Aligned_cols=466 Identities=16% Similarity=0.170 Sum_probs=248.6
Q ss_pred hhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc-hhHHHHH-HHHHHH
Q 005975 22 LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD-ANVQSAA-HLLDRL 99 (666)
Q Consensus 22 ~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d-~~Vr~gA-~~LdrL 99 (666)
=|.+...+++.++..++.++.|.|..||..||..+..|++....+. -.++++..+.+++-.+ .++=-|| -+|+.+
T Consensus 331 e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAEL 407 (1133)
T KOG1943|consen 331 EGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAEL 407 (1133)
T ss_pred cccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHH
Confidence 3556778999999999999999999999999999877765333222 3455555555443222 2333355 566665
Q ss_pred HHH-hhcccccccHhhhHHHHHHhhc--------CCCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHH-HhcCCCC
Q 005975 100 VKD-IVTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLF-NMLSDSS 168 (666)
Q Consensus 100 lKD-Iv~e~~~f~L~~fIPlL~eri~--------~~np~vR~~alswL~~L~sv-p~~~Li~yLp~fL~gLf-~lLsD~~ 168 (666)
... +.. .--++.++|.+..-+. ..-..||-.+|=-+-.+.-. .+.++-+++..+..+|. ..+-|+.
T Consensus 408 A~rGlLl---ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 408 ALRGLLL---PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE 484 (1133)
T ss_pred HhcCCcc---hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch
Confidence 441 111 1236778888876663 23457888887766666544 34567788888888764 6779999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCC-------C--------------------CHH----HHHHHHHHh-cCCCCHHHHHHH
Q 005975 169 HEIRQQADSALWEFLQEIKNSPS-------V--------------------DYG----RMAEILVQR-AASPDEFTRLTA 216 (666)
Q Consensus 169 ~eVR~~A~~~L~~fL~eI~~~~~-------~--------------------d~~----~iI~iLl~~-~~s~d~~irl~A 216 (666)
-.+|++|..++.+.+.-.++.|+ + .++ .+++-++.. +.+=|..+|..+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 99999999887777765555431 0 122 344444433 455578888888
Q ss_pred HHHHHHHHHhcCcccc-cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCC---CCCC---h---HhHHHHHHH
Q 005975 217 ITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA---DGFD---V---GPILSIATR 286 (666)
Q Consensus 217 l~WL~~~i~l~~~~l~-pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~---~~~d---l---~~il~~L~~ 286 (666)
..-+..+....++.+. -++|+++ ++....+.+.|..+..+.+++......-. .+++ + ..+++.+..
T Consensus 565 a~aL~~Ls~~~pk~~a~~~L~~ll----d~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~ 640 (1133)
T KOG1943|consen 565 AYALHKLSLTEPKYLADYVLPPLL----DSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICD 640 (1133)
T ss_pred HHHHHHHHHhhHHhhcccchhhhh----hhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHH
Confidence 8888876666666555 3455554 44445566667666555555433221100 0000 0 112221111
Q ss_pred -hcCC-CcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----ccchHHH-HH
Q 005975 287 -QLSS-EWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFRQ-LV 358 (666)
Q Consensus 287 -~L~~-~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~----~~~~F~~-fm 358 (666)
.+.- ....-|.+.+..+-.+....+.-...++ ++.--.+.+++.+++ .++..+-+..+++++ ++.++.. ++
T Consensus 641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li 719 (1133)
T KOG1943|consen 641 RYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLI 719 (1133)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHH
Confidence 1111 1123355555555444443332111111 112223344445556 677777788888773 3444443 66
Q ss_pred HHHHhhccccchhhhhHHHHHHHHHhccCChH--------HHHHHHHHhhcccCChHHHHHHHHHHHHHhccch------
Q 005975 359 VFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--------RVYRELSTILEGEADLDFACTMVQALNLILLTSS------ 424 (666)
Q Consensus 359 ~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E--------~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~------ 424 (666)
...+....+...--+.|| +---|..++.| .+++.+-+....+...+=-+.-|..|+.+--|..
T Consensus 720 ~~~ls~~~~~~~~~~r~g---~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~ 796 (1133)
T KOG1943|consen 720 TRYLSRLTKCSEERIRRG---LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSE 796 (1133)
T ss_pred HHHHHHhcCchHHHHHHH---HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666654433223333 33345556643 4444443333222122222234444544444433
Q ss_pred hHHHHHHHHHhccCC----cch-----------HHHHHHHHHhhc-----cChHHHHHHHHHHhh-------hHHHHHHH
Q 005975 425 ELSELRDLLKKSLVN----PAG-----------KDLFVSLYASWC-----HSPMAIISLCLLAQT-------YHHASAVI 477 (666)
Q Consensus 425 El~~lR~~L~~~l~~----~~~-----------~~lF~~L~~~w~-----~n~vs~lsLcll~~~-------Y~~a~~l~ 477 (666)
-..++|+.|-+++++ .+| ..++..++.+=. -+.|--+==|++.|. ||+|+...
T Consensus 797 ~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~ 876 (1133)
T KOG1943|consen 797 SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASAL 876 (1133)
T ss_pred cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666666655431 111 233333332211 001111111244443 56666666
Q ss_pred HHhhccccchHHHHHHHHHHHHhh
Q 005975 478 QSLVEEDLNVKFLVQLDKLIRLLE 501 (666)
Q Consensus 478 ~~~~~~e~~~~~l~q~d~LvqllE 501 (666)
+.+--.++++.-+=.+++|-..+-
T Consensus 877 ~qi~~~~~~i~~~~~~~~L~ei~~ 900 (1133)
T KOG1943|consen 877 NQIVVHSPSIPHFRHIEKLEEIFP 900 (1133)
T ss_pred hceeecCCCCCcchHHHHHHhhcC
Confidence 666555666666666666655544
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00011 Score=83.24 Aligned_cols=270 Identities=19% Similarity=0.200 Sum_probs=178.0
Q ss_pred HHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccH-hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---
Q 005975 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--- 147 (666)
Q Consensus 73 eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L-~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~--- 147 (666)
-+++.|..+..|.|.+||..| ++|=.|-+ -|.+ ...-....+.+.+.+..||..|+..+.+..+..+.
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-------g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE-------GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc-------cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345668889999999999998 65444422 1222 23445667888899999999999999988776521
Q ss_pred ---hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 005975 148 ---DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQR-----AASPDEFTRLTAITW 219 (666)
Q Consensus 148 ---~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~-----~~s~d~~irl~Al~W 219 (666)
+=......-+..++.++.|-.-.||..|.++|+.|-..=.. +=.+.+=+.+..+ ..+.-+......-+|
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee---~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE---IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH---HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCc
Confidence 22457788899999999999999999999999988652210 0011111122221 111111111111222
Q ss_pred HHH--H-HHhc-------CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCCh-HhHHHHHHHhc
Q 005975 220 INE--F-VKLG-------GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQL 288 (666)
Q Consensus 220 L~~--~-i~l~-------~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L 288 (666)
=+- . .+.+ ...++|. +-=+++...+.|+--|+|.+|......|...- .++ ...++.|...|
T Consensus 348 SsGk~~~advpsee~d~~~~siI~s--GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss------P~FA~~aldfLvDMf 419 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPS--GACGALVHGLEDEFYEVRRAAVASLCSLATSS------PGFAVRALDFLVDMF 419 (823)
T ss_pred ccCccccccCchhhccccccccccc--cccceeeeechHHHHHHHHHHHHHHHHHHcCC------CCcHHHHHHHHHHHh
Confidence 110 0 0000 0111111 11235566777888899999988776654221 223 47788999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHhhc
Q 005975 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNF 365 (666)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is-~~~~~F~~fm~~LL~lf 365 (666)
.|+.+.+|+.|+..|.++..+ ...-++.++.++++|.|.+.+||....++|+.-- ++.+-++..+++|++.+
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999988 3555678899999999999999998888877644 44566777777777644
No 47
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.27 E-value=1.4e-05 Score=92.88 Aligned_cols=192 Identities=19% Similarity=0.258 Sum_probs=152.6
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccc---c---------cccHhhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 005975 72 NQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES---D---------QFSIEEFIPLLRERMNVLNPYVRQFLVGWIT 139 (666)
Q Consensus 72 ~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~---~---------~f~L~~fIPlL~eri~~~np~vR~~alswL~ 139 (666)
.++...|..++++++.. .-+|.+++=+++|+-.-. + +.--..++|.|.+.+.+..-..|-..+..+.
T Consensus 814 ~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 814 SEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred chHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 46777777777774321 223366666666654321 1 2224667899999988777778877777777
Q ss_pred -HhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC---HHHHHH
Q 005975 140 -VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD---EFTRLT 215 (666)
Q Consensus 140 -~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d---~~irl~ 215 (666)
++..+|..-+.+.+|.+++-|.+.++=++.+||..+.+++..++.+-..-..-+.+.++|+++.--.+.| -.+|..
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHH
Confidence 4566999999999999999999999999999999999999999986654334578999999998877776 468999
Q ss_pred HHHHHHHHHH-hcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 216 AITWINEFVK-LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 216 Al~WL~~~i~-l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
|+.-+..+-. .+...+.||-|+++.+|.|+|.|+..-+|+.|.++-+.-
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9998888888 788899999999999999999999999999999886543
No 48
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=7.5e-05 Score=79.43 Aligned_cols=224 Identities=22% Similarity=0.222 Sum_probs=142.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHH------Hhh
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DIV 104 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv--~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlK------DIv 104 (666)
+|-+...+...|..||||+|.++.||+-- .|.-...-=+.+.++|..+..|+++-||-.| .+|..+.- .||
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 45666777888999999999999999633 2333333346789999999999999999887 55555432 222
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFL 183 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~-~eVR~~A~~~L~~fL 183 (666)
. .+ + +|.+.+.++++--..-..-+.+|.++.--|..+...-=..||.+|.++|.-.+ .+++-.|...|..+.
T Consensus 290 ~-ag--~----lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 290 E-AG--S----LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred h-cC--C----chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 1 11 2 56666666543322233345677777666665554445568999999996654 458888888888887
Q ss_pred HHhhcCCCC-CHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 184 QEIKNSPSV-DYGRMAEILVQRAASPDEFT--RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 184 ~eI~~~~~~-d~~~iI~iLl~~~~s~d~~i--rl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
..-.....+ -=..-||.+..-+.+..-.+ +..++...-.+.+..+..|.. ..++|+++|...+...|+|..|..+
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh--cCCcceeecccCccchhhcccHHHH
Confidence 533221111 11223444444444433333 344554443344444444443 4789999999999999999999888
Q ss_pred HHHHHH
Q 005975 261 NEELRA 266 (666)
Q Consensus 261 n~~L~~ 266 (666)
...|-.
T Consensus 441 L~Nlss 446 (550)
T KOG4224|consen 441 LINLSS 446 (550)
T ss_pred HHhhhh
Confidence 766643
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=7.5e-05 Score=83.76 Aligned_cols=307 Identities=17% Similarity=0.136 Sum_probs=201.8
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhcc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSD--ANVQSAAHLLDRLVKDIVTE 106 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv---~r~~il~~f~eIfd~L~kl~~D~d--~~Vr~gA~~LdrLlKDIv~e 106 (666)
..+|..+.++..++..||.-|.-||.||+.- +|+.++.+ .+++.|..++..++ ..+|+++-+|..+|+.-...
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~--g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC--GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh--cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 3678889999999999999999999999743 34444432 56777887777666 58999999999999854322
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
..--.+..++|.|...+++.|+.|...+|..+..|..-++..+-. ---.+.+.|..+|.-++..|+..|-.+++...
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-- 307 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-- 307 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee--
Confidence 222458899999999999999999999999999887766543322 12245666777888888888877644444321
Q ss_pred hhcCCCCCH-------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCcHHHHHH
Q 005975 186 IKNSPSVDY-------GRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVV 256 (666)
Q Consensus 186 I~~~~~~d~-------~~iI~iLl~~~~-s~d~~irl~Al~WL~~~i~l~~~~l~p-ylp~lL~~LL~~Lsd~~~eIR~~ 256 (666)
. +-|. ...++.+...+. ++.+-+|.+|+..|+.+..-..+..-. .-..++|.|+..|...+.++|+.
T Consensus 308 --t--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 308 --T--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred --e--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 1 1121 345677777777 555668998988888766522221111 12378899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCh---HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHh-------hhhHH--HHHH
Q 005975 257 ARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL-------HFLND--IFDT 324 (666)
Q Consensus 257 A~~~n~~L~~~i~~~~~~~dl---~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~-------~~l~~--l~p~ 324 (666)
|.-+...+..... .+.+.| ..+++.++..|.-.+...-..+|+-+..+.......-. .++++ -+..
T Consensus 384 AawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 384 AAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 9887655432211 011111 34778888888766666666667766666655433222 11111 1122
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 325 LLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 325 LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+-..-+.++.+|-.++..++..+=
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhc
Confidence 222223455677777777766654
No 50
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.0019 Score=77.61 Aligned_cols=361 Identities=12% Similarity=0.116 Sum_probs=228.6
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---cc-----hh-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHH--
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RG-----DF-IIFFNQIFDALCKLSADSDANVQSAAHLLDR-- 98 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~---r~-----~i-l~~f~eIfd~L~kl~~D~d~~Vr~gA~~Ldr-- 98 (666)
..++-|.+...+.- .+..|-+.|.+|..++... .+ ++ ..+=...++.+++....+-+.-+.....-++
T Consensus 516 F~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 516 FTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 44455555555544 3488999999998887653 11 11 2333455666666654443322111222222
Q ss_pred --HHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHH-HHHHHHHhhcCCchhhhhchHHHHHHHHHhc-CCCChhHHHH
Q 005975 99 --LVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQF-LVGWITVLDSVPDIDMLGFLPDFLDGLFNML-SDSSHEIRQQ 174 (666)
Q Consensus 99 --LlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~-alswL~~L~svp~~~Li~yLp~fL~gLf~lL-sD~~~eVR~~ 174 (666)
..++..+.+++--...+..-+.+.-.+.|..++.+ ..+-+..++.+....=-.+...++ .+.... +-.++.|++.
T Consensus 595 ~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK 673 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKK 673 (1176)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHH
Confidence 33344444443334444444445444444444433 233333333322211111222222 222233 3347789999
Q ss_pred HHHHHHHHHHHhhcC--CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHH
Q 005975 175 ADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEK 252 (666)
Q Consensus 175 A~~~L~~fL~eI~~~--~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~e 252 (666)
+-..|+.++....-. ..-....+.+.|.+..++.....|..++.-+..+++..+.+...++|+.+|.++=++.+.+..
T Consensus 674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~ 753 (1176)
T KOG1248|consen 674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVK 753 (1176)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHH
Confidence 988888888651000 012467888999999999999999999998888999988899999999999888888888899
Q ss_pred HHHHHHHHHHHHH--HhhCCCCCCC---ChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHH-hhhhHHHHHHHH
Q 005975 253 IRVVARETNEELR--AIKADPADGF---DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLNDIFDTLL 326 (666)
Q Consensus 253 IR~~A~~~n~~L~--~~i~~~~~~~---dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i-~~~l~~l~p~LL 326 (666)
.|..|-++...+. ....++++.. .+.+++..+...+-.+....+-+.+-.+..++....+.+ .+++++++..+-
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~ 833 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVC 833 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999988777 3333333332 357788888888765443333333445555554444433 367888888898
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHH
Q 005975 327 KALSDPSDEVVLLVLEVHACIAKD------LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERV 392 (666)
Q Consensus 327 ~~LsD~s~eVv~~~l~lLa~Is~~------~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~I 392 (666)
..|...+++|+..|...+...+.. ..|.+.+|..++.+.++.+.....+...++-.||...+.+.+
T Consensus 834 ~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 834 LYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999999998887732 457778999999988877776677777788888888887443
No 51
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0018 Score=77.90 Aligned_cols=282 Identities=17% Similarity=0.189 Sum_probs=176.9
Q ss_pred HHHHHHHHHhhcCCchhHHH--HHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-
Q 005975 72 NQIFDALCKLSADSDANVQS--AAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID- 148 (666)
Q Consensus 72 ~eIfd~L~kl~~D~d~~Vr~--gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~- 148 (666)
..+++..-.+++|.|..|+. .+..||-++.-..... .-++..+-...-+.-+..++.++.-+-.-|..+...|..+
T Consensus 611 ~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~-e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~ 689 (1176)
T KOG1248|consen 611 GSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQT-ESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEG 689 (1176)
T ss_pred HHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhcccc-chhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhh
Confidence 45666667777777655432 2345555544222211 1122222222223333457777777777777776665433
Q ss_pred -hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-HHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHH-
Q 005975 149 -MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGR-MAEILVQRAASPDEFTRLTAITWINEFV- 224 (666)
Q Consensus 149 -Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d-~~~-iI~iLl~~~~s~d~~irl~Al~WL~~~i- 224 (666)
...++.++...|+.-+.+...-+|.....||..+++.... .+.+ +.. |.+.++.. ..-|...|.+|..-|.++.
T Consensus 690 ~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~-e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA-EHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHH
Confidence 3356666677777777777788999999999999987752 1222 233 44444444 7777777777766665555
Q ss_pred -Hh---cC-----cccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC---hHhHHHHHHHhcCCCc
Q 005975 225 -KL---GG-----DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSEW 292 (666)
Q Consensus 225 -~l---~~-----~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L~~~~ 292 (666)
+. .+ ..+-+|++.|-.+ +. .++.|..|.. .-.+...+.+..+.+| +..+++.+...+.+.+
T Consensus 768 i~~~~d~g~e~~~~~lnefl~~Isag----l~--gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~s 840 (1176)
T KOG1248|consen 768 IQSSLDDGNEPASAILNEFLSIISAG----LV--GDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNS 840 (1176)
T ss_pred HHhhhcccccchHHHHHHHHHHHHhh----hc--ccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCC
Confidence 22 11 1233344443333 22 3445555554 2222222222222333 5688888999999999
Q ss_pred HHHHHHHHHHHHHHHhhChHH-HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHh
Q 005975 293 EATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVH 363 (666)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~-i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~~~~F~~fm~~LL~ 363 (666)
.+.+.+|+..+..+..+.|+. +.+|.+.++|.++..+.|..-.++.+...++.++.. +-++.+.|+.....
T Consensus 841 reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~ 914 (1176)
T KOG1248|consen 841 REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDM 914 (1176)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHH
Confidence 999999999999999999988 568999999999998888899999999999888884 44556666664433
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0013 Score=76.01 Aligned_cols=312 Identities=17% Similarity=0.157 Sum_probs=157.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHH---Hhhc----
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK---DIVT---- 105 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlK---DIv~---- 105 (666)
+-.|-.|-.|+.+.||+.|+.|+ .|-.+-+- .+-.++.+.+-++++|.++-|-.+| .+.+..|= |++.
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AI---pKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyr 220 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAI---PKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYR 220 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhh---HHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHH
Confidence 34455677889999999888884 44322111 2234778888888999999888777 43333111 0110
Q ss_pred -------------------------------c---------cc------------------cccHhhhHHHHHHhhcCCC
Q 005975 106 -------------------------------E---------SD------------------QFSIEEFIPLLRERMNVLN 127 (666)
Q Consensus 106 -------------------------------e---------~~------------------~f~L~~fIPlL~eri~~~n 127 (666)
+ .+ ..++..|+.-..-++++.|
T Consensus 221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n 300 (968)
T KOG1060|consen 221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN 300 (968)
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC
Confidence 0 00 2345556666666677778
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-----------------
Q 005975 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP----------------- 190 (666)
Q Consensus 128 p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~----------------- 190 (666)
|.|-..++...+.+.... -.-.|.+.|.++|. .+++|+..+-+++..+...-+.-.
T Consensus 301 ~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v 373 (968)
T KOG1060|consen 301 PSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV 373 (968)
T ss_pred cHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence 877777777776655322 23445677776554 445777766666555543222100
Q ss_pred -------------CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHH
Q 005975 191 -------------SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (666)
Q Consensus 191 -------------~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A 257 (666)
.-+...|..-+...+.+.|......|+..|+.+.+.. ...-+.++.+++..|+..+.-|-..|
T Consensus 374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~----~sv~~tCL~gLv~Llsshde~Vv~ea 449 (968)
T KOG1060|consen 374 KILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRI----GSVTDTCLNGLVQLLSSHDELVVAEA 449 (968)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh----CchhhHHHHHHHHHHhcccchhHHHH
Confidence 0112223333333344444333334444444333322 22245555555555554444333333
Q ss_pred HHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 005975 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv 337 (666)
..+...|++.- ...-.+++..|...+++-..+.--|++.||+.-+-- .+....++++-.+.++.+|+.++|.
T Consensus 450 V~vIk~Llq~~-----p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evK 521 (968)
T KOG1060|consen 450 VVVIKRLLQKD-----PAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVK 521 (968)
T ss_pred HHHHHHHHhhC-----hHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhh
Confidence 33322222110 001123444444445444444455566666432211 1233444555566666677777776
Q ss_pred HHHHHHHHHHh-hccchHHHHHHHHHhhcccc
Q 005975 338 LLVLEVHACIA-KDLQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 338 ~~~l~lLa~Is-~~~~~F~~fm~~LL~lf~~d 368 (666)
...+.+-+++= .+...++...+-.+.+-+-|
T Consensus 522 lQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD 553 (968)
T KOG1060|consen 522 LQILNLSAKLYLTNIDQTKLLVQYVFELARYD 553 (968)
T ss_pred HHHHHhhhhheEechhhHHHHHHHHHHHhccC
Confidence 66666655543 34444555555555544433
No 53
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.04 E-value=0.0014 Score=78.54 Aligned_cols=253 Identities=22% Similarity=0.187 Sum_probs=164.7
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc----hhhhhHHHHHHHHHHhhcC-CchhHHHHH-HHHHHHH
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLV 100 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~----~il~~f~eIfd~L~kl~~D-~d~~Vr~gA-~~LdrLl 100 (666)
+.-++.|+|-++.++.|++++||-.|.+.|..+.-.+++ +...|-.=|||.|-.++.| ....||-+= ..|..++
T Consensus 457 e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 457 EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 445788999999999999999999999988887544442 4444556789999999999 555666433 5677776
Q ss_pred HHhhcccccccHhhhHHHHHHh-----hcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHH----HHHhcCCCChhH
Q 005975 101 KDIVTESDQFSIEEFIPLLRER-----MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG----LFNMLSDSSHEI 171 (666)
Q Consensus 101 KDIv~e~~~f~L~~fIPlL~er-----i~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~g----Lf~lLsD~~~eV 171 (666)
|... .|...-.+. ..+.|.+ ..+....-.++..+..+ ...+++|+.+-|
T Consensus 537 ~tA~---------rFle~~q~~~~~g~~n~~nse-------------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 537 KTAY---------RFLELTQELRQAGMLNDPNSE-------------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIV 594 (1431)
T ss_pred HHHH---------HHHHHHHHHHhcccccCcccc-------------cccccccchHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6333 233222220 1122222 12222223334444433 357889999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-cccc---hHhHHHHHhhhhc
Q 005975 172 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPY---YADILGAILPCIS 247 (666)
Q Consensus 172 R~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~-l~py---lp~lL~~LL~~Ls 247 (666)
|++--+.+..++.-+++....| -++..|+..+++.|...|-.-. ..+.|-. ++.. =.-++|.+...++
T Consensus 595 kr~Lle~i~~LC~FFGk~ksND--~iLshLiTfLNDkDw~LR~aFf------dsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKEKSND--VILSHLITFLNDKDWRLRGAFF------DSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred HHHHHHHHHHHHHHhhhccccc--chHHHHHHHhcCccHHHHHHHH------hhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 9998888888888887644333 4778888888888877765322 2222211 1111 2457899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh
Q 005975 248 DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (666)
Q Consensus 248 d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p 311 (666)
|.++-+-..|-.+...|.+.-- -.+..+-++++.+.-.+-+++-=+|-+++..+...++...
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~l--l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGL--LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcc--cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 9999887777777766655421 0112234555555556667887789999999999888743
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00088 Score=77.53 Aligned_cols=281 Identities=19% Similarity=0.233 Sum_probs=153.7
Q ss_pred hhhhHHH-hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHH
Q 005975 22 LFFYSET-ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (666)
Q Consensus 22 ~~~~~~~-yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrL 99 (666)
+|....+ -...+.|.|-+-++.+++-||+-|..+.+.++....+ ...+|.. +--+++.|.+..|--|+ ..+-.+
T Consensus 131 lg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e~f~~---~~~~lL~ek~hGVL~~~l~l~~e~ 206 (866)
T KOG1062|consen 131 LGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-LVEHFVI---AFRKLLCEKHHGVLIAGLHLITEL 206 (866)
T ss_pred hhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-HHHHhhH---HHHHHHhhcCCceeeeHHHHHHHH
Confidence 4444433 3356777777778888888888888887777653332 2233322 22344666777676666 444555
Q ss_pred HHHhhcccccc--cHhhhHHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC
Q 005975 100 VKDIVTESDQF--SIEEFIPLLRERMN-----------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD 166 (666)
Q Consensus 100 lKDIv~e~~~f--~L~~fIPlL~eri~-----------~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD 166 (666)
||.-......| -++.|+-.|.+... ..+|+..-.++-.++.+-.. +.+-.+-|.++|..++. =+|
T Consensus 207 c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvat-ntd 284 (866)
T KOG1062|consen 207 CKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVAT-NTD 284 (866)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHh-ccc
Confidence 55211111111 24445555554442 46798888888888866543 45567778888888874 233
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC-CCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005975 167 SSHEIRQQADSALWEFLQEIKNS-PSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (666)
Q Consensus 167 ~~~eVR~~A~~~L~~fL~eI~~~-~~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~ 244 (666)
+++.+-++- |=+.++.|-.. +.-.+ .--+++|-+++.+.|--+|..|+..+...++..+.....| =..|+.
T Consensus 285 sskN~GnAI---LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIle 357 (866)
T KOG1062|consen 285 SSKNAGNAI---LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILE 357 (866)
T ss_pred ccccchhHH---HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHH
Confidence 333333221 22222222110 00000 1123333334445555566666666666666655543333 235667
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
|+.|+|..||.-|-+... .++. +-++..+++-|.+.|.+.+++.|..+..-+..+++++..+=.=|++.++
T Consensus 358 CL~DpD~SIkrralELs~---~lvn----~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml 428 (866)
T KOG1062|consen 358 CLKDPDVSIKRRALELSY---ALVN----ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTML 428 (866)
T ss_pred HhcCCcHHHHHHHHHHHH---HHhc----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 788888888776655432 2222 2446667777777776666777777777777777775443333444433
No 55
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.002 Score=74.13 Aligned_cols=331 Identities=17% Similarity=0.202 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC
Q 005975 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D 84 (666)
++|-=|||+-.++-|.-=... +.-++.+.|.|.+||...++-||..|.-|++.|-|+ .....+--++++... +.++
T Consensus 108 LQHPNEyiRG~TLRFLckLkE-~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~f--L~~e 183 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE-PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESF--LLTE 183 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc-HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHH--HHhc
Confidence 456678888887766543333 456788999999999999999999999999999875 223333344444433 4688
Q ss_pred CchhHHHHH-HHHH-----HHHHHhhc---ccccc---cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005975 85 SDANVQSAA-HLLD-----RLVKDIVT---ESDQF---SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (666)
Q Consensus 85 ~d~~Vr~gA-~~Ld-----rLlKDIv~---e~~~f---~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y 152 (666)
.|++.|..| ..|- +.++-+.. ..+.| ---.++.++..-- ..+|.-|.--+.+|.++.+..+...+ |
T Consensus 184 ~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~-~~~p~~~~~~i~~i~~lL~stssaV~-f 261 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVC-LANPAEKARYIRCIYNLLSSTSSAVI-F 261 (948)
T ss_pred cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHH-hcCHHHhhHHHHHHHHHHhcCCchhh-h
Confidence 999998888 3221 11110000 00000 0111111111111 13444444444444444332221110 0
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005975 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (666)
Q Consensus 153 Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~ 232 (666)
+--..|..+-+|| ..+|.+| +++=+++.. .+|--+++..+--|.++-. .-.
T Consensus 262 --Eaa~tlv~lS~~p-~alk~Aa-~~~i~l~~k---------------------esdnnvklIvldrl~~l~~----~~~ 312 (948)
T KOG1058|consen 262 --EAAGTLVTLSNDP-TALKAAA-STYIDLLVK---------------------ESDNNVKLIVLDRLSELKA----LHE 312 (948)
T ss_pred --hhcceEEEccCCH-HHHHHHH-HHHHHHHHh---------------------ccCcchhhhhHHHHHHHhh----hhH
Confidence 0001111222222 1233333 322222211 1122233333222222221 112
Q ss_pred cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc-------HHHHHHHHHHHHH
Q 005975 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-------EATRIEALHWIST 305 (666)
Q Consensus 233 pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~-------~~tR~aaL~WL~~ 305 (666)
.-+.+++--+|+.++.++-++|.-+-. --++++. .-++++++..|.+++...+ -.=|..=++-++.
T Consensus 313 ~il~~l~mDvLrvLss~dldvr~Ktld---i~ldLvs----srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ 385 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSSPDLDVRSKTLD---IALDLVS----SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA 385 (948)
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHH---HHHhhhh----hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence 235677777888899999998865543 3344443 3557899999998885321 2226666666666
Q ss_pred HHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH-HHHHHHHhhccccchhhhhHHHHHHH
Q 005975 306 LLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR-QLVVFLVHNFRVDNSLLEKRGALIIR 381 (666)
Q Consensus 306 L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~-~fm~~LL~lf~~d~~lLe~Rg~~IIR 381 (666)
.+-++| .+...++|.|++.++|.++..-.-.+..+...-+.-+.++ ..+.+|+.-|+.=|.---+||.+||-
T Consensus 386 cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 386 CAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred HhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHH
Confidence 666665 4566799999999999998877777777776665555555 48888888887666555788988764
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0027 Score=73.71 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=72.2
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHH
Q 005975 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLV 358 (666)
Q Consensus 279 ~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm 358 (666)
.-+++|.+-+.+.+--+|.-||+-|.-+....|.-+..|=. +++.||.|+++.+++.|+++.-.+. |+..-+.++
T Consensus 313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~----tIleCL~DpD~SIkrralELs~~lv-n~~Nv~~mv 387 (866)
T KOG1062|consen 313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS----TILECLKDPDVSIKRRALELSYALV-NESNVRVMV 387 (866)
T ss_pred HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH----HHHHHhcCCcHHHHHHHHHHHHHHh-ccccHHHHH
Confidence 45678888888888889999999999999999999988864 5678899999999999999999988 567788888
Q ss_pred HHHHhhcccc
Q 005975 359 VFLVHNFRVD 368 (666)
Q Consensus 359 ~~LL~lf~~d 368 (666)
+.|+..+..-
T Consensus 388 ~eLl~fL~~~ 397 (866)
T KOG1062|consen 388 KELLEFLESS 397 (866)
T ss_pred HHHHHHHHhc
Confidence 8888877443
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.04 Score=63.67 Aligned_cols=204 Identities=19% Similarity=0.209 Sum_probs=134.2
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHH----HHHH---------
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH----LLDR--------- 98 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~----~Ldr--------- 98 (666)
.+-+-|+.-++..-+-+|+-|...+|.|.-...+.+-+. ||.|-.-+.|+|+.|.+||- .|+|
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~----FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC----FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh----HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 466778888889999999999999999875545555444 55666667999999999993 2333
Q ss_pred ---HHHHhhcccc------------------cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---ch-hhhhch
Q 005975 99 ---LVKDIVTESD------------------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP---DI-DMLGFL 153 (666)
Q Consensus 99 ---LlKDIv~e~~------------------~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp---~~-~Li~yL 153 (666)
+-|=.++.++ ..--.+++|+|.+.|.. ......+-+|++.+.++. +. +-..-.
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~s--T~AmSLlYECvNTVVa~s~s~g~~d~~asi 297 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMES--TVAMSLLYECVNTVVAVSMSSGMSDHSASI 297 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHh--hHHHHHHHHHHHHheeehhccCCCCcHHHH
Confidence 1111122111 23335677777777753 233445556777665540 10 222333
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005975 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (666)
Q Consensus 154 p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p 233 (666)
--.+..|=.++.|+++..|-..+-|+...++.=+. -....-++++.|+.+.|+-||+.|+.-+..++.-..
T Consensus 298 qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~----~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN----- 368 (877)
T KOG1059|consen 298 QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK----AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN----- 368 (877)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH----HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh-----
Confidence 44555666778888888888888888877752211 245566788999999999999999998887776443
Q ss_pred chHhHHHHHhhhhcCCcH
Q 005975 234 YYADILGAILPCISDKEE 251 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~ 251 (666)
+-.|+..++..+..++.
T Consensus 369 -l~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 369 -LMEIVKTLMKHVEKAEG 385 (877)
T ss_pred -HHHHHHHHHHHHHhccc
Confidence 55677777776665554
No 58
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0091 Score=71.38 Aligned_cols=403 Identities=17% Similarity=0.199 Sum_probs=222.0
Q ss_pred hhhhhHHHhhhhhHHHHHhhcCCCC--------HHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHH-HhhcCCchhHH
Q 005975 21 DLFFYSETILQQIVPPVLNSFSDQD--------SRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALC-KLSADSDANVQ 90 (666)
Q Consensus 21 ~~~~~~~~yl~~Il~pVL~~~~D~d--------~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~-kl~~D~d~~Vr 90 (666)
.-|-....-++.|+|-|+.++.=++ ..||-+||-.+..++..... ++-++...++.+|. ..+=|++-|+|
T Consensus 409 ~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 409 LRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred hcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 3344456678899999998886443 35999999999888876543 55577777888886 66689999999
Q ss_pred HHH-HHHHHHHH---------Hhhccc-------------------cccc--H-hhhHHHHHHhhcCCCHHHHHHHHHHH
Q 005975 91 SAA-HLLDRLVK---------DIVTES-------------------DQFS--I-EEFIPLLRERMNVLNPYVRQFLVGWI 138 (666)
Q Consensus 91 ~gA-~~LdrLlK---------DIv~e~-------------------~~f~--L-~~fIPlL~eri~~~np~vR~~alswL 138 (666)
.|| .++...+- +|++-. +.|+ . +.|=+++...+.+=|+.+|..+-.++
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 999 44322111 111110 0121 1 22222233334456789999988888
Q ss_pred HHhhcCCchhhh-hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC----------CHHHHHHHHHHhcCC
Q 005975 139 TVLDSVPDIDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV----------DYGRMAEILVQRAAS 207 (666)
Q Consensus 139 ~~L~svp~~~Li-~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~----------d~~~iI~iLl~~~~s 207 (666)
..+....+..+. .|+|.+++ ...-++.+.|..+.-+.++++........+ ....+++.+......
T Consensus 569 ~~Ls~~~pk~~a~~~L~~lld----~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 569 HKLSLTEPKYLADYVLPPLLD----STLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFY 644 (1133)
T ss_pred HHHHHhhHHhhcccchhhhhh----hhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhc
Confidence 887776666666 46776666 444567788887777777776655332211 112234433333322
Q ss_pred CC--HHHHHHHHHHHHHHHHhcCcccccchH-hHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHH
Q 005975 208 PD--EFTRLTAITWINEFVKLGGDQLVPYYA-DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIA 284 (666)
Q Consensus 208 ~d--~~irl~Al~WL~~~i~l~~~~l~pylp-~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L 284 (666)
.. +.+|...+..|..+-......+..++- +....+..++.+.+ .||+.|-.+..++........++.. .+++...
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~-~~li~~~ 722 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE-APLITRY 722 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh-hHHHHHH
Confidence 22 456666666666544333322222222 24445666666666 8999998887776443221111111 2466655
Q ss_pred HHhcCCC-cHHHHHHHHHHHHHHHhhChHHHh-hhhH-HHHHHHHHhc-CCCCHHHHHHHHHHHHHHhh------ccchH
Q 005975 285 TRQLSSE-WEATRIEALHWISTLLNRHRTEVL-HFLN-DIFDTLLKAL-SDPSDEVVLLVLEVHACIAK------DLQHF 354 (666)
Q Consensus 285 ~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~i~-~~l~-~l~p~LL~~L-sD~s~eVv~~~l~lLa~Is~------~~~~F 354 (666)
..++.+. .+.+|......++. .|.++. -++. .+-..++... +|..++-|......+++++. -...+
T Consensus 723 ls~~~~~~~~~~r~g~~lal~~----lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~ 798 (1133)
T KOG1943|consen 723 LSRLTKCSEERIRRGLILALGV----LPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESI 798 (1133)
T ss_pred HHHhcCchHHHHHHHHHHHHcc----CcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence 5666554 55566654444433 332222 1212 2222222222 34466777777777777773 24567
Q ss_pred HHHHHHHHhhccccchhhhhHHHH--HHHH------------Hhc--cCChHHHHHHHHHhhccc--CChHHHHHHHHHH
Q 005975 355 RQLVVFLVHNFRVDNSLLEKRGAL--IIRR------------LCV--LLDAERVYRELSTILEGE--ADLDFACTMVQAL 416 (666)
Q Consensus 355 ~~fm~~LL~lf~~d~~lLe~Rg~~--IIR~------------Lc~--~L~~E~Iy~~la~iL~~~--~dl~F~~~mVq~L 416 (666)
++|+..|++-+.+-- ...||.. ++|. +|. ++.++.|-+.+..++... .--++=+-..+.+
T Consensus 799 ~k~~e~LL~~lddYt--td~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~ 876 (1133)
T KOG1943|consen 799 EKFRETLLNALDDYT--TDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASAL 876 (1133)
T ss_pred HHHHHHHHHHHhhcc--cccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 778888887765331 1223333 4443 221 344455555555555431 1123344566778
Q ss_pred HHHhccchhHHHH--HHHHHh
Q 005975 417 NLILLTSSELSEL--RDLLKK 435 (666)
Q Consensus 417 n~iLLTs~El~~l--R~~L~~ 435 (666)
+.|+-+++-.-.+ |.+|-+
T Consensus 877 ~qi~~~~~~i~~~~~~~~L~e 897 (1133)
T KOG1943|consen 877 NQIVVHSPSIPHFRHIEKLEE 897 (1133)
T ss_pred hceeecCCCCCcchHHHHHHh
Confidence 8888876533333 444443
No 59
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.88 E-value=0.00082 Score=66.17 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=110.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc
Q 005975 168 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (666)
Q Consensus 168 ~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls 247 (666)
++.||..+..++++++...++ -+++.++.+..++.++++.+|.+|+.-+..++. .+++.+-+.++..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence 578999999999999964422 357788899999999999999999998887765 4677777888899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCCCCCCC--ChHhHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 005975 248 DKEEKIRVVARETNEELRAIKADPADGF--DVGPILSIATRQLS-----SEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (666)
Q Consensus 248 d~~~eIR~~A~~~n~~L~~~i~~~~~~~--dl~~il~~L~~~L~-----~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~ 320 (666)
|++++||..|..+..++..-... +.+ .+.+++..+...-. ..+.+.|...+..+.....+ ...-..-.++
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~--~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~k 150 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNP--NIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEK 150 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHH
Confidence 99999999999988877654321 111 12333333333322 23455566666666666654 2223333444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 321 IFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 321 l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
+..-++..-.+..+.+.+-+..+|
T Consensus 151 l~~~~~~~~~~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 151 LCQRFLNAVVDEDERVLRDILYCL 174 (178)
T ss_pred HHHHHHHHcccccHHHHHHHHHHH
Confidence 444444433333444444444444
No 60
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0029 Score=73.33 Aligned_cols=397 Identities=15% Similarity=0.159 Sum_probs=248.1
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f 110 (666)
..++.....+.++.+..|.-|...+ |+...-| .-...+|+.+.+..+-.|-..|+-- ..+-+..+ .. ..
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkv--Ia~Mt~G---~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~----~~-P~ 82 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKV--IAYMTVG---KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK----GK-PD 82 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHH--HhcCccC---cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhc----cC-ch
Confidence 3455556666666666666553321 3322222 1234667777777776666666644 22222222 11 11
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
--...++.+..-+.+.||-+|-.|+.-+. .+.-..+..| +.++|.+.+.|.++-||+.|.-|...+-. +.. .
T Consensus 83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey---~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~-~ 154 (734)
T KOG1061|consen 83 LAILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEY---LCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDP-D 154 (734)
T ss_pred HHHhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHH---HHHHHHHhccCCChhHHHHHHHHHHHhhc-CCh-h
Confidence 12345777777788999999998865543 3333344444 48889999999999999999777766643 211 1
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc-ccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~-~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
.++-..+++.|-..+.+.++.+=..|+..+.++.+..++ .....-+.++..++..+..-++=-+ ..+.+.+.....
T Consensus 155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p 231 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVP 231 (734)
T ss_pred hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCC
Confidence 234467888888888899999988999999999998764 4444455666666655543221111 112223333333
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-
Q 005975 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA- 348 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is- 348 (666)
+ +..+..++++-+...+.+.+..+-+++..-+..+....+.--...+.++-|.++..++-++ ++---++.=...|-
T Consensus 232 ~--d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 232 K--DSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred C--CchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 2 2356789999999999999999999999999999988877555677788888887777666 65544444333333
Q ss_pred hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc--cCChHHHHHHHHHHHHHhccchhH
Q 005975 349 KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG--EADLDFACTMVQALNLILLTSSEL 426 (666)
Q Consensus 349 ~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~--~~dl~F~~~mVq~Ln~iLLTs~El 426 (666)
..+++|+.=+..+.-.+.+---.-.++ +.-++...+.+.+...+++..+. +.|.+|+...|+.+-.+=+..++-
T Consensus 309 ~~p~~~~~~~~~Ff~kynDPiYvK~eK----leil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 309 KRPEILKVEIKVFFCKYNDPIYVKLEK----LEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred hChHHHHhHhHeeeeecCCchhhHHHH----HHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence 344455543332222222211111122 45567788889999999988876 589999999999999998887766
Q ss_pred HHHHHHHHhccC------CcchHHHHHHHHHhhccC
Q 005975 427 SELRDLLKKSLV------NPAGKDLFVSLYASWCHS 456 (666)
Q Consensus 427 ~~lR~~L~~~l~------~~~~~~lF~~L~~~w~~n 456 (666)
.+.=..|-++++ ..+....|..++|-.--+
T Consensus 385 ~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 385 NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 443222222222 234455666665544333
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.87 E-value=5.9e-05 Score=67.39 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=84.6
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHH-HHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN-QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~-eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
.+++.++..+.|.++.+|..|+.++.++++........... .+++.+.+++.|+++.|+..| .+|.+++.+-......
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 37899999999999999999999999998653222222233 789999999999999999888 7888876643211111
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~ 142 (666)
.--..++|.+.+.+.+.+..+|..++..+.++.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 212348999999999999999999998888764
No 62
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.85 E-value=0.0028 Score=76.22 Aligned_cols=335 Identities=18% Similarity=0.177 Sum_probs=197.3
Q ss_pred cHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 111 SIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 111 ~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
.+-.|++.+..+|+. .-++.|..+++.+..+....+.+. -|..+++-+..++.|+..+||..|-..|.+++..++..
T Consensus 419 ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 419 GAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred ceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 355799999999987 567999999999998877555443 36777777888999999999999999999999988877
Q ss_pred CCCCHHH----HHHHHHHhcCCCC-HHHH-----------HHHHHHHHHHHHhc-------C-------cccccchHhHH
Q 005975 190 PSVDYGR----MAEILVQRAASPD-EFTR-----------LTAITWINEFVKLG-------G-------DQLVPYYADIL 239 (666)
Q Consensus 190 ~~~d~~~----iI~iLl~~~~s~d-~~ir-----------l~Al~WL~~~i~l~-------~-------~~l~pylp~lL 239 (666)
+..|-.= +.|-|-....+.+ ..+| .+|...+..--.+. + ...-.++..+.
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 6655333 3333333334422 2222 33333222111110 0 01112233333
Q ss_pred ----HHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHh
Q 005975 240 ----GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 315 (666)
Q Consensus 240 ----~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~ 315 (666)
..+...++|+.+-+|.+-.+....|-.+.++... =+-++..|...|.|.+|..|-|-.+=+.-+.-..+..
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 3445567788888887766655555554443211 1568889999999999999988666554333332222
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhccccchhhhhHHHH-HHHHHhccCChH
Q 005975 316 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLDAE 390 (666)
Q Consensus 316 ~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~-IIR~Lc~~L~~E 390 (666)
.--+-++|.|...|+|..+.|+.++++.+.-+++ ...+..++++..+-++-.-+.- -.|+.. ||--....+++-
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~W-IR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLW-IRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHH-HHHHHHHHHHHHHhhhhhh
Confidence 1134578999999999999999999999998885 2455556666666555322111 112221 222233333333
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhh
Q 005975 391 RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTY 470 (666)
Q Consensus 391 ~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y 470 (666)
.+|..+.-++. .|++.-| +-+-++ ..|-.++..+=.++.|..+++ |.- -.+.+==|+....|
T Consensus 731 dvyc~l~P~ir-----pfl~~~v-----~~i~s~------~~LlsclkpPVsRsv~~~l~r-~~~-ens~f~k~l~~~~~ 792 (1431)
T KOG1240|consen 731 DVYCKLMPLIR-----PFLERPV-----IQIESK------EVLLSCLKPPVSRSVFNQLLR-WSD-ENSSFWKKLLERHY 792 (1431)
T ss_pred hheEEeehhhH-----HhhhccH-----hhhcch------HHHHHHhcCCCcHHHHHHHHH-Hhh-cchHHHHHHHHHhh
Confidence 44444443331 1211100 001111 123334556667778888776 333 34455567777776
Q ss_pred H
Q 005975 471 H 471 (666)
Q Consensus 471 ~ 471 (666)
.
T Consensus 793 ~ 793 (1431)
T KOG1240|consen 793 S 793 (1431)
T ss_pred h
Confidence 3
No 63
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.84 E-value=0.0007 Score=80.43 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=148.8
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i-l~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e 106 (666)
..+..+.+.+...+.|++|.-|.-|.|.+-.+.+..+.++ ..+.+.+.-.+-...-|.+-+|..-|
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~a------------- 315 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLA------------- 315 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHH-------------
Confidence 4567788889999999999999999999888877655333 34555554444444456665543222
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
...|..++.-.+..+..|--..++.+|..+.|..+++|.++..+++.++.
T Consensus 316 ----------------------------a~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-- 365 (815)
T KOG1820|consen 316 ----------------------------AQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-- 365 (815)
T ss_pred ----------------------------HHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--
Confidence 12233333333334566777778888889999999999999898888886
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc--cccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ--LVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~--l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
...+..|++.++..+.++++.+|..+..|+.......+.. ...=...++|.+.+...|.+.++|.+|.++...+
T Consensus 366 ----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 366 ----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred ----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999888875532 2334778899999999999999999999999988
Q ss_pred HHhhCC
Q 005975 265 RAIKAD 270 (666)
Q Consensus 265 ~~~i~~ 270 (666)
++..++
T Consensus 442 ~k~~Ge 447 (815)
T KOG1820|consen 442 MKVHGE 447 (815)
T ss_pred HHHhhH
Confidence 887664
No 64
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.83 E-value=0.019 Score=64.05 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=157.5
Q ss_pred cHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHhh
Q 005975 111 SIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 111 ~L~~fIPlL~eri~~-~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lL-sD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
+...++..+.+.... .++..|..++..+..+.+ .++.+ .+.++++.+.... ++..++-|..+-+.+.-..+...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 455677777776554 569999999999987765 45555 6677777777666 56667778877788877777776
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc--------cc-----ccchHhHHHHHhhhhcCCcHHHH
Q 005975 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD--------QL-----VPYYADILGAILPCISDKEEKIR 254 (666)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~--------~l-----~pylp~lL~~LL~~Lsd~~~eIR 254 (666)
...+.....+++.++..+.+ +.+...|..-+..++.-.++ .. -.|+..++|.++......+.++|
T Consensus 263 ~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 263 MRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred HcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 66677788899999988887 55555555555444443111 11 24578888888888887777777
Q ss_pred HHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHh
Q 005975 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (666)
Q Consensus 255 ~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~ 328 (666)
...-.+...+++.+...--.-+++.+++.|.+-+..++..+|.++|+=+..+.+..|+-+.+|++.++|.|++.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 77767766666554321111346899999999999999999999999999999999999999999999999874
No 65
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.045 Score=64.59 Aligned_cols=279 Identities=15% Similarity=0.108 Sum_probs=159.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHH
Q 005975 41 FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLL 119 (666)
Q Consensus 41 ~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL 119 (666)
+.+++.+.|.-|...+ |+...-|+- +..+|+.+.|..+..|..+|.-- ..|-+..| ...--.-.-++.+
T Consensus 28 l~s~n~~~kidAmK~i--Ia~M~~G~d---mssLf~dViK~~~trd~ElKrL~ylYl~~yak-----~~P~~~lLavNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKI--IAQMSLGED---MSSLFPDVIKNVATRDVELKRLLYLYLERYAK-----LKPELALLAVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHH--HHHHhcCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHH
Confidence 5566666666554443 333344543 56777777777777788888755 33333322 1111123346777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHH-HH
Q 005975 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR-MA 198 (666)
Q Consensus 120 ~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~-iI 198 (666)
+.=++++||.+|-+++.-+. .+... ..++.+++.+-+++.|+++-||+.|.-|+.++-+ ..++.-.+. .+
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls---~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~ 168 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLS---LLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLI 168 (757)
T ss_pred HhhccCCCHHHHHHHHHHHH---hcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHH
Confidence 88889999999999976665 33333 3466779999999999999999999887777653 111111233 67
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHH-HHHHHHHHHHHHHhhCCCCCCCCh
Q 005975 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI-RVVARETNEELRAIKADPADGFDV 277 (666)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eI-R~~A~~~n~~L~~~i~~~~~~~dl 277 (666)
.++..-..+.||.+...|+.-+.++. ++...+|.-.+...+-....-+.... +..-....+.|+........ +-
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~---~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~ 243 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEID---PELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SA 243 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhc---hhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cH
Confidence 77777788999999888888776554 44566666655555444332111111 11111112223322222111 23
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
..+...+.-.+.+.+..+-..++.-+..+....+..- ....+-|.+. +|.+..+..+...+.....
T Consensus 244 ~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~--~~~~~~~~l~-~Ll~~~~~~~~~vl~~~~~ 309 (757)
T COG5096 244 EDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN--LFLISSPPLV-TLLAKPESLIQYVLRRNIQ 309 (757)
T ss_pred HHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc--HHHhhccHHH-HHHcCCHHHHHHHHHHhhH
Confidence 3444555556666677777777777766666554331 3333334343 3344445555545444333
No 66
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.03 Score=65.22 Aligned_cols=324 Identities=16% Similarity=0.182 Sum_probs=187.3
Q ss_pred HHHHHHHHHHH-hcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhh-hHHHHHHhhcCCCH
Q 005975 52 ACEALYNIAKV-VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE-FIPLLRERMNVLNP 128 (666)
Q Consensus 52 A~eaL~nI~Kv-~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~-fIPlL~eri~~~np 128 (666)
-||||.-|+.. ++|.. ..+.|+++.|.++..+..||+-- -.|=|..+.-. ++.. =|..++.-++++||
T Consensus 52 KleAmKRIia~iA~G~d---vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp------dLALLSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 52 KLEAMKRIIALIAKGKD---VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP------DLALLSINTFQKALKDPNQ 122 (968)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC------CceeeeHHHHHhhhcCCcH
Confidence 36678777543 56644 35778889999999999999877 45555544111 1111 15677888999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC
Q 005975 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (666)
Q Consensus 129 ~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~ 208 (666)
-+|-+|+.-+.-+ -+-..-|-.|-.+-++.+|+.+-||+.|..++-.+-.-=+. +.+.+++++-.-+.+.
T Consensus 123 LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e----~k~qL~e~I~~LLaD~ 192 (968)
T KOG1060|consen 123 LIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE----QKDQLEEVIKKLLADR 192 (968)
T ss_pred HHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh----hHHHHHHHHHHHhcCC
Confidence 9999886655422 23334577778888999999999999998877766531111 1223333333333333
Q ss_pred CHHHH-------------------------------------HHHHHHHHHHHHhc--Cccc------------------
Q 005975 209 DEFTR-------------------------------------LTAITWINEFVKLG--GDQL------------------ 231 (666)
Q Consensus 209 d~~ir-------------------------------------l~Al~WL~~~i~l~--~~~l------------------ 231 (666)
++.+- ...++.+..++... ....
T Consensus 193 splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~ 272 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKY 272 (968)
T ss_pred CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccc
Confidence 33221 11222222221110 0000
Q ss_pred ----ccc-----hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005975 232 ----VPY-----YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (666)
Q Consensus 232 ----~py-----lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~W 302 (666)
.|| +--+|..+-|++-..++.+--+++.+.-.+ +..-+...+++.|...|.+ +..+|.-.|+-
T Consensus 273 ~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~l-------AP~~~~~~i~kaLvrLLrs-~~~vqyvvL~n 344 (968)
T KOG1060|consen 273 NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHL-------APKNQVTKIAKALVRLLRS-NREVQYVVLQN 344 (968)
T ss_pred cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhh-------CCHHHHHHHHHHHHHHHhc-CCcchhhhHHH
Confidence 010 111111111111122222111111111110 1111346777778776654 55689999999
Q ss_pred HHHHHhhChHHHhhhhHHH------------------------------HHHHHHhcCCCCHHHHHHHHHHHHHHhhc-c
Q 005975 303 ISTLLNRHRTEVLHFLNDI------------------------------FDTLLKALSDPSDEVVLLVLEVHACIAKD-L 351 (666)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l------------------------------~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-~ 351 (666)
+..+..+.|.=+.||+... ++.+..-.++.+-+++..+.+.+++-+++ .
T Consensus 345 Ia~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~ 424 (968)
T KOG1060|consen 345 IATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG 424 (968)
T ss_pred HHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC
Confidence 9999999998888887643 23333333444445777777778777753 3
Q ss_pred chHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHH--HHHHHHHhhcc
Q 005975 352 QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--VYRELSTILEG 402 (666)
Q Consensus 352 ~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~--Iy~~la~iL~~ 402 (666)
.-=...|.+|+.++++.....-+-...+||.|-..=+++. |-..||+.+..
T Consensus 425 sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldt 477 (968)
T KOG1060|consen 425 SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDT 477 (968)
T ss_pred chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhh
Confidence 3345689999999976644444445778999888877764 88888887753
No 67
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.73 E-value=0.0096 Score=64.00 Aligned_cols=246 Identities=23% Similarity=0.235 Sum_probs=162.9
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhhccc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
....+|++...+.|.++.||..|..++.++- .++..+.|.+++. |.+..||..| ..|.++ ..
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----~~-- 135 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DPEAVPPLVELLENDENEGVRAAAARALGKL----GD-- 135 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----Cc--
Confidence 3678899999999999999999999776652 2455666777666 8999999888 444442 11
Q ss_pred ccccHhhhHHHHHHhhcCCC------------HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHH
Q 005975 108 DQFSIEEFIPLLRERMNVLN------------PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~n------------p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A 175 (666)
... ++.+.+-+.+.+ ..+|..++..+..+. -|...+.+..++.|+..+||..|
T Consensus 136 -~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 136 -ERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred -hhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHH
Confidence 111 333444444433 246666666665332 44556667778999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHH
Q 005975 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (666)
Q Consensus 176 ~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~ 255 (666)
..+|+...... ..+.+.+.....+++..+|..++.-+... -..+-.+.+...+.+.+..++.
T Consensus 201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~----------~~~~~~~~l~~~l~~~~~~~~~ 262 (335)
T COG1413 201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEI----------GDEEAVDALAKALEDEDVILAL 262 (335)
T ss_pred HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhccc----------CcchhHHHHHHHHhccchHHHH
Confidence 88888877532 46778888899999999999877766421 1345667777788888877776
Q ss_pred HHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH
Q 005975 256 VARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (666)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e 335 (666)
.+..... ..+...-...+...+.+..+..|..+..-+..+..... ...++....+....
T Consensus 263 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~a~~~~~~~~~~~ 321 (335)
T COG1413 263 LAAAALG-----------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA----------VAALLLALEDGDAD 321 (335)
T ss_pred HHHHHhc-----------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch----------HHHHHHHhcCCchh
Confidence 6665543 22233444455666667777778887777766666542 22344555555566
Q ss_pred HHHHHHHHHH
Q 005975 336 VVLLVLEVHA 345 (666)
Q Consensus 336 Vv~~~l~lLa 345 (666)
++........
T Consensus 322 ~~~~~~~~~~ 331 (335)
T COG1413 322 VRKAALILLE 331 (335)
T ss_pred hHHHHHHHHH
Confidence 6655554443
No 68
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.72 E-value=0.02 Score=67.44 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=186.0
Q ss_pred HHhhhhhhHHHhhhhhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HH
Q 005975 18 LYADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HL 95 (666)
Q Consensus 18 ~~~~~~~~~~~yl~~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~ 95 (666)
+|..--....+.+..++..-++.++ |.-+-+|-.|+.++.-..| ..-+.+..+.|+|+|..++++....|-+.- ++
T Consensus 476 ~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~ 553 (1005)
T KOG2274|consen 476 KFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEA 553 (1005)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHH
Confidence 3333333444555556655555554 6667788888777544332 123346778889999988888877665433 33
Q ss_pred HHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHH
Q 005975 96 LDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (666)
Q Consensus 96 LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A 175 (666)
|...+|== .+-++-.=++ ..|.++--..+.-+|| -|-..+
T Consensus 554 Ls~vv~~d-pef~as~~sk-------------------------------------I~P~~i~lF~k~s~DP--~V~~~~ 593 (1005)
T KOG2274|consen 554 LSSVVKLD-PEFAASMESK-------------------------------------ICPLTINLFLKYSEDP--QVASLA 593 (1005)
T ss_pred HHHHhccC-hhhhhhhhcc-------------------------------------hhHHHHHHHHHhcCCc--hHHHHH
Confidence 33322200 0000000111 2333444344555666 566666
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCc
Q 005975 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKE 250 (666)
Q Consensus 176 ~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d----~~irl~Al~WL~~~i~l~~~~l~p-ylp~lL~~LL~~Lsd~~ 250 (666)
..++.++++ +....+.--...||.++.-++.++ ....-+|+..|..++.-.|..+-. +.....|++.+|.-+++
T Consensus 594 qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd 672 (1005)
T KOG2274|consen 594 QDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD 672 (1005)
T ss_pred HHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC
Confidence 777777776 333233334566777777777665 455667888999899887766432 45667788888887664
Q ss_pred -HHHHHHHHHHHHHHHHh----hC--CCCCCCChHhHHHHHHHhcCCCcH-HHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 251 -EKIRVVARETNEELRAI----KA--DPADGFDVGPILSIATRQLSSEWE-ATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 251 -~eIR~~A~~~n~~L~~~----i~--~~~~~~dl~~il~~L~~~L~~~~~-~tR~aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
.+.-..+.+|...+... +. ....+.++.-++.++.+.|+-... .+-.-+=..+..+..+++.++.+-+++++
T Consensus 673 D~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL 752 (1005)
T KOG2274|consen 673 DHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQIL 752 (1005)
T ss_pred ChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHH
Confidence 57778888888777644 11 123456688999999977764332 22222335778999999999999999999
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHHhhccchHHHHHHHHHhhc
Q 005975 323 DTLLKALSDPS-DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNF 365 (666)
Q Consensus 323 p~LL~~LsD~s-~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf 365 (666)
.++++.|.... ..|++.-.-+++.+.- ...+++|.-|..++
T Consensus 753 ~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL~Slp 794 (1005)
T KOG2274|consen 753 RAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFLSSLP 794 (1005)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHHHhCC
Confidence 99998887654 5666666667777662 23344444444444
No 69
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.71 E-value=6.7e-05 Score=59.10 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005975 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (666)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~I 347 (666)
|.+|.+|+.-|+.+.+.+++.+.+|.++++|.|.+.|.|++++||..+++.|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999865
No 70
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0075 Score=70.03 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=71.7
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHhhccchHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV-HACIAKDLQHFR 355 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~l-La~Is~~~~~F~ 355 (666)
++.++.++...+.+-+++.--+|+.|++--+..+ .+-.+.++..+++...|+..+|...=+.. +..+-.....=+
T Consensus 421 ~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~----i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq 496 (734)
T KOG1061|consen 421 YESVVAILCENLDSLQEPEAKAALIWILGEYAER----IENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQ 496 (734)
T ss_pred hhhhhhhhcccccccCChHHHHHHHHHHhhhhhc----cCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHH
Confidence 5788899999998888888889999987655544 34455677778888888887776533322 222223344456
Q ss_pred HHHHHHHhhcc--ccchhhhhHHHHHHHHHh
Q 005975 356 QLVVFLVHNFR--VDNSLLEKRGALIIRRLC 384 (666)
Q Consensus 356 ~fm~~LL~lf~--~d~~lLe~Rg~~IIR~Lc 384 (666)
..+++++..-- ++..-+..||=+++|-|.
T Consensus 497 ~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 497 ELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 67778887664 345678889888888776
No 71
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0044 Score=70.57 Aligned_cols=212 Identities=21% Similarity=0.184 Sum_probs=135.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHh-hc---cc-c
Q 005975 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI-VT---ES-D 108 (666)
Q Consensus 35 ~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDI-v~---e~-~ 108 (666)
.-+...++|+|.+||..|.|+|..+.++.+ --.-+....++.++|.+..||.+| .++--.-+-- +. +. .
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 337778899999999999999988765322 123456777899999999999999 4332211111 00 00 1
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHH------------------------------
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLD------------------------------ 158 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~------------------------------ 158 (666)
..-.+.-.-.+.+-+.+....||..+-..+.-+..+...=+..-|..=+-
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 12233334455555666666666665555554443332211111111111
Q ss_pred ---------------------HHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhcCCCCHHHHHHH
Q 005975 159 ---------------------GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTA 216 (666)
Q Consensus 159 ---------------------gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~-~~iI~iLl~~~~s~d~~irl~A 216 (666)
.+..-+.|.--|||++|...+..+.. . .+++ ..-+.+|++..++..+.+|+.|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---s--sP~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---S--SPGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---C--CCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 11122455556899999887777764 2 2444 4577899999999889999999
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHH
Q 005975 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (666)
Q Consensus 217 l~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n 261 (666)
+..+..+... +.-=.+.++.++.+|.|..++||+...+..
T Consensus 431 i~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 431 IFALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999877765 333467899999999999999998776643
No 72
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.61 E-value=0.00034 Score=62.40 Aligned_cols=110 Identities=24% Similarity=0.198 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005975 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (666)
Q Consensus 74 Ifd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y 152 (666)
+++.|.+++.|++..+|.+| .+|..++++.......+--..++|.+.+.+.+.|+.+|..++..+.++...++.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 46777888888888899888 77777776422222222223789999999999999999999999999987665333322
Q ss_pred h-HHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 153 L-PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 153 L-p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
. ..+++.|.+.+.|.+.++|..++.+|..+.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 347888889999999999999999888764
No 73
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.00063 Score=72.05 Aligned_cols=222 Identities=23% Similarity=0.210 Sum_probs=152.5
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHH---HHhcchhhhhHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHHHhhcc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIA---KVVRGDFIIFFNQIFDALCKLSADSD---ANVQSAAHLLDRLVKDIVTE 106 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~---Kv~r~~il~~f~eIfd~L~kl~~D~d---~~Vr~gA~~LdrLlKDIv~e 106 (666)
-+|-.+.-+.+++..||..|.=||.||+ ..||+.++.+ ..++.+..++.++. ..+|++.-.|..++..--..
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~--galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC--GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc--CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 4688888999999999999999999997 3356666543 45566666554443 46788888899998754433
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~-fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
.+.-.+.+-+|.|...||+.||.+-.-+|-.|+.+...|...+-..++. +.+.|..+|+.++..|..-| ++.
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa-------lR~ 308 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA-------LRS 308 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH-------HHh
Confidence 4455688999999999999999999999999999988887655444443 33447778888877776555 333
Q ss_pred hhcCC-CCCH-------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCcHHHHH
Q 005975 186 IKNSP-SVDY-------GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRV 255 (666)
Q Consensus 186 I~~~~-~~d~-------~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py--lp~lL~~LL~~Lsd~~~eIR~ 255 (666)
+++.. .-|. -..++.+..-+.++.+-+|.+||--|+.+-. +...=+.+ =..++|-+...|++.+-.+|+
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-Gnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-GNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-CCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 33321 1111 2234455555778888899999877765322 21111111 134677788888988999999
Q ss_pred HHHHHHHHH
Q 005975 256 VARETNEEL 264 (666)
Q Consensus 256 ~A~~~n~~L 264 (666)
.|+=+....
T Consensus 388 EACWAisNa 396 (526)
T COG5064 388 EACWAISNA 396 (526)
T ss_pred HHHHHHHhh
Confidence 888665443
No 74
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.52 E-value=0.53 Score=58.75 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC
Q 005975 211 FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 290 (666)
Q Consensus 211 ~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~ 290 (666)
++-.....|+.-++.. ...|..-+...|..|+..+..+...+|.-|.+|...+... ++.-+--..+-..+...+.|
T Consensus 791 ~~d~~~a~li~~~la~-~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~---Dp~vL~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 791 FADDDDAKLIVFYLAH-ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA---DPSVLSRPDVQEAVHGRLND 866 (1692)
T ss_pred cccchhHHHHHHHHHh-hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc---ChHhhcCHHHHHHHHHhhcc
Confidence 4445567777655433 2345555778888888888988899999999998665432 12222235677788889999
Q ss_pred CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhc---cc
Q 005975 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNF---RV 367 (666)
Q Consensus 291 ~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf---~~ 367 (666)
++..+|+||++.++.+.-..|+-+..|++.+.. ...|+.-.||+.+...+..||+..+.|..+..-..+++ .+
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~i~e----rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQIIE----RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHHHHh----hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcc
Confidence 999999999999999999999888888777654 55899999999999999999988888887655555544 44
Q ss_pred cchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHH--HhccchhHHHHHHHHHhccCCcchHHH
Q 005975 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNL--ILLTSSELSELRDLLKKSLVNPAGKDL 445 (666)
Q Consensus 368 d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~--iLLTs~El~~lR~~L~~~l~~~~~~~l 445 (666)
+....++=...++-++--.=.++..+. ..+.+=+..+++..+. .+.+..+=+=++..|+..+..
T Consensus 943 EEg~I~kLv~etf~klWF~p~~~~~d~--------~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~------ 1008 (1692)
T KOG1020|consen 943 EEGNIKKLVRETFLKLWFTPVPEVNDQ--------PAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK------ 1008 (1692)
T ss_pred chhHHHHHHHHHHHHHhccCCCccccc--------HHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh------
Confidence 433222221112221111111111110 0112222233333322 444444444456666652110
Q ss_pred HHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHh-----hccc--cchHHHHHHHHHHHHhhchhhHHHHHHhcCCCC-
Q 005975 446 FVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL-----VEED--LNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGR- 517 (666)
Q Consensus 446 F~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~-----~~~e--~~~~~l~q~d~LvqllEspif~~lRl~Lle~~~- 517 (666)
=..=||+||+-=+ -+|-.+|+.++ +++| ...+-=-+.+.+--+.==-+|+..|=+||-|..
T Consensus 1009 ----~~~~~~~~v~~~~-------v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv 1077 (1692)
T KOG1020|consen 1009 ----TMKESVKPVALAK-------VTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHV 1077 (1692)
T ss_pred ----hhhhhhhHHHHhh-------cchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHH
Confidence 1234688886433 34555555544 2222 222222222233333334689999999999755
Q ss_pred ---ChhHHH
Q 005975 518 ---YTWLLK 523 (666)
Q Consensus 518 ---~p~L~k 523 (666)
+|||--
T Consensus 1078 ~tL~PYL~s 1086 (1692)
T KOG1020|consen 1078 ITLQPYLTS 1086 (1692)
T ss_pred HHhhhHHhc
Confidence 788753
No 75
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.50 E-value=0.0011 Score=65.30 Aligned_cols=92 Identities=25% Similarity=0.327 Sum_probs=74.2
Q ss_pred chhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc
Q 005975 86 DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML 164 (666)
Q Consensus 86 d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL 164 (666)
++.||+.| ..+.-++. .-+. -++.++|.+..++.+++|.||..++..++.|.. .+++..=+.++..+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~----r~~~-~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI----RYPN-LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHH----hCcH-HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHH
Confidence 46788888 55555444 2222 378899999999999999999999999998764 366777777888888899
Q ss_pred CCCChhHHHHHHHHHHHHHHH
Q 005975 165 SDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 165 sD~~~eVR~~A~~~L~~fL~e 185 (666)
.|++++||..|..++.++...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988874
No 76
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.077 Score=61.35 Aligned_cols=172 Identities=18% Similarity=0.118 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005975 70 FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (666)
Q Consensus 70 ~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~ 148 (666)
..+.+|..|.+....++..||--. .+|.++... +.+.++---+.+...+..|+++..|.||.-|+-++.-+...|+.+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 456778889999999999999877 566665542 223333346889999999999999999999999999998777665
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
=.+-.+.+..- +=.||++|||++|-.+ |..+ ++-.|.++.++.+.+..+|.-+-.-+-.=+....
T Consensus 161 e~~v~n~l~~l---iqnDpS~EVRRaaLsn-------I~vd-----nsTlp~IveRarDV~~anRrlvY~r~lpkid~r~ 225 (892)
T KOG2025|consen 161 ECPVVNLLKDL---IQNDPSDEVRRAALSN-------ISVD-----NSTLPCIVERARDVSGANRRLVYERCLPKIDLRS 225 (892)
T ss_pred cccHHHHHHHH---HhcCCcHHHHHHHHHh-------hccC-----cccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Confidence 44433333331 2389999999998332 2111 3446788888888888877654332211111111
Q ss_pred cccccchHhHHHHHhhhhcCCcHHHHHHHHHHH
Q 005975 229 DQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (666)
Q Consensus 229 ~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n 261 (666)
.. ..+-+-.+-..+.|-+..+|.++.+..
T Consensus 226 ls----i~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 226 LS----IDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred hh----HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 11 224444555677788888888877654
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.41 E-value=0.00032 Score=55.19 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 128 p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
|.+|..++..|..+....+..+.+|+|++++.|..++.|++++||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999998888888889999999999999999999999999999998753
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.39 E-value=0.00076 Score=57.58 Aligned_cols=84 Identities=30% Similarity=0.338 Sum_probs=66.4
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccccc
Q 005975 34 VPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 34 l~pVL~~~-~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~ 111 (666)
+|.+++.+ +|+++.||..|+.++.++. =++..+.|..++.|+++.||..| ..|.++ .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------C
Confidence 57788888 9999999999999887542 13678888888999999999988 555443 3
Q ss_pred HhhhHHHHHHhhcC-CCHHHHHHHHHHH
Q 005975 112 IEEFIPLLRERMNV-LNPYVRQFLVGWI 138 (666)
Q Consensus 112 L~~fIPlL~eri~~-~np~vR~~alswL 138 (666)
-+..+|.|.+.+.+ .+..+|..++..|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 46789999998876 5667798887765
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.39 E-value=0.0074 Score=67.20 Aligned_cols=187 Identities=17% Similarity=-0.018 Sum_probs=119.2
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccccc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~ 111 (666)
.+..++.++.|.+..||..+.++|..| ..++..+.|..++.|.++.||.++ .++..- ..+ +
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r----~~~----~ 148 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH----RHD----P 148 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh----ccC----h
Confidence 489999999999999999999998654 235667888999999999999877 333321 111 1
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH------
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE------ 185 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e------ 185 (666)
.+.+...+.+.+|.||.-++..+..+... +.++.|...+.|.+++||.+|..++..+-..
T Consensus 149 ----~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 149 ----GPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred ----HHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 34555666799999999998888755422 2233355679999999999998877555210
Q ss_pred --hhcCCCCC-------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc
Q 005975 186 --IKNSPSVD-------------YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE 250 (666)
Q Consensus 186 --I~~~~~~d-------------~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~ 250 (666)
....+... -+..++.|..-.+++ .+|..++.-+.. ++ -|+.++.++..|.++.
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~---lg-------~p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGL---VG-------DVEAAPWCLEAMREPP 282 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHH---cC-------CcchHHHHHHHhcCcH
Confidence 00011110 012333333333322 233333333221 11 4677888888888765
Q ss_pred HHHHHHHHHHHHHHH
Q 005975 251 EKIRVVARETNEELR 265 (666)
Q Consensus 251 ~eIR~~A~~~n~~L~ 265 (666)
+|..|.++...+.
T Consensus 283 --~aR~A~eA~~~It 295 (410)
T TIGR02270 283 --WARLAGEAFSLIT 295 (410)
T ss_pred --HHHHHHHHHHHhh
Confidence 8888888876654
No 80
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.61 Score=56.01 Aligned_cols=239 Identities=17% Similarity=0.230 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHH---HhhcCCCCH---------HHHH------------HHHHHHHH
Q 005975 3 KWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPV---LNSFSDQDS---------RVRY------------YACEALYN 58 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pV---L~~~~D~d~---------rVR~------------~A~eaL~n 58 (666)
-|+.++.+|+.+..= -+..-+.+.+++..|+.-| +-|++|.|. -+|. .|+..+-.
T Consensus 319 rvl~~~l~fl~~~Vs-~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~ 397 (1010)
T KOG1991|consen 319 RVLYYLLNFLEQCVS-HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLT 397 (1010)
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHH
Confidence 355566666654411 0111123355555555433 347776654 3454 24444444
Q ss_pred HHHHhcc-h----hhhhHHHHHHHHHHh-hcCCchhHHHHH-HHHHHHHHHhhcccccc--cHhh-hHHHHHHhhcCCCH
Q 005975 59 IAKVVRG-D----FIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTESDQF--SIEE-FIPLLRERMNVLNP 128 (666)
Q Consensus 59 I~Kv~r~-~----il~~f~eIfd~L~kl-~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f--~L~~-fIPlL~eri~~~np 128 (666)
.+..-|| + ++.+..+||..--.- ....++.-|.|| ..++.++ ++..+.+.+ -++. +++.+.--+.++-=
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~-~~L~K~s~~~~~mE~flv~hVfP~f~s~~g 476 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA-SILLKKSPYKSQMEYFLVNHVFPEFQSPYG 476 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH-HHHccCCchHHHHHHHHHHHhhHhhcCchh
Confidence 4333342 3 345555555543322 223356778899 6777777 666554321 1222 23344444555666
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHh
Q 005975 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQR 204 (666)
Q Consensus 129 ~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLs-D~~~eVR~~A~~~L~~fL~eI~~~---~~~d~~~iI~iLl~~ 204 (666)
+.|.-+|.-+..+.++-=.+ -..+-+.++...+.+. |++--||..|.-+|..|+..-+.. ...+++.+++-+++-
T Consensus 477 ~Lrarac~vl~~~~~~df~d-~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSIDFKD-PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 88999999888887542111 1245566777777776 888999999999999998766533 234567777777776
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHH----HHhhhhc
Q 005975 205 AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG----AILPCIS 247 (666)
Q Consensus 205 ~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~----~LL~~Ls 247 (666)
.+..+-+.-.. -|..|+.-.++.+.||-+++.. ..++++.
T Consensus 556 ~ne~End~Lt~---vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 556 SNEVENDDLTN---VMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHhcchhHHHH---HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 66555443222 3445566677888898777655 4444554
No 81
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.34 E-value=0.1 Score=61.81 Aligned_cols=329 Identities=18% Similarity=0.216 Sum_probs=168.0
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc-cc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES-DQ 109 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~-~~ 109 (666)
.-.+..-.....++.-.| .|...|.|++...+.+....=..++..|.+++...+..+.-.+ ..|.++. |..|+ +.
T Consensus 250 ~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS--i~~ENK~~ 326 (708)
T PF05804_consen 250 KELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS--IFKENKDE 326 (708)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHHH
Confidence 334555555566666666 6677799988665544433345778888888876666555544 4555542 11111 12
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~--~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
..-..++|.|...+...++..+..++..+.+|..-++. .|+. -.+++.|..++.|++ .|..|...|-.+-..=+
T Consensus 327 m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 327 MAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPN--FREVALKILYNLSMDDE 402 (708)
T ss_pred HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh
Confidence 22345788899999999999999999999888655542 2332 113334445666653 44444444433322111
Q ss_pred cCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh--------cCcccc-------cchHhHHHHHhhhhcCCcH
Q 005975 188 NSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKL--------GGDQLV-------PYYADILGAILPCISDKEE 251 (666)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~-s~d~~irl~Al~WL~~~i~l--------~~~~l~-------pylp~lL~~LL~~Lsd~~~ 251 (666)
....+.+.+.+|.+++.+- .+++.+...++.-+..+..- .+..+- .+-..++=-++.+++..++
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG 482 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1111222233444444322 23333322221111110000 011110 0111112223444444443
Q ss_pred HHHHHHHHHHHHHHHhhCCC-----------------CCCCChH------hHHHHHHHhcCCC--cHHHHHHHHHHHHHH
Q 005975 252 KIRVVARETNEELRAIKADP-----------------ADGFDVG------PILSIATRQLSSE--WEATRIEALHWISTL 306 (666)
Q Consensus 252 eIR~~A~~~n~~L~~~i~~~-----------------~~~~dl~------~il~~L~~~L~~~--~~~tR~aaL~WL~~L 306 (666)
..+.......+.+.+.+... ..+.|+. .+++.+...+... ..+..+.+..|++.+
T Consensus 483 ~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 483 PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 34444444444444333221 1123443 4556777777532 345788888888877
Q ss_pred HhhChHHHhhhh--HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccchHHH------HHHHHHhhccccc
Q 005975 307 LNRHRTEVLHFL--NDIFDTLLKALSDP--SDEVVLLVLEVHACIAKDLQHFRQ------LVVFLVHNFRVDN 369 (666)
Q Consensus 307 ~~~~p~~i~~~l--~~l~p~LL~~LsD~--s~eVv~~~l~lLa~Is~~~~~F~~------fm~~LL~lf~~d~ 369 (666)
+.- ++-...+ .++++.|+..|+.. ++|+|...+.++.++-.++.-.+. ...-|+.++++.+
T Consensus 563 a~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N 633 (708)
T PF05804_consen 563 ASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN 633 (708)
T ss_pred HCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC
Confidence 642 2222332 46777777777654 588888888888888754333322 4445666555443
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.34 E-value=0.00025 Score=49.48 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=27.1
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKV 62 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv 62 (666)
|+|.++.+++|++++||++|++++.+|+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
No 83
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.30 E-value=0.0018 Score=75.99 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=120.4
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~ 105 (666)
..+...|+|.+...|.-.+..+|--=.++|.++.+.... -+++.++.+++-|...++=+|..||--+. +++++.++
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl---~~i~~~l~ 938 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTL---RTIPMLLT 938 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHh---hhhhHHHH
Confidence 456778999999999855555555557788888876654 45699999999999999988888886662 14455555
Q ss_pred ccc---cccHhhhHHHHHHhhcCCC---HHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005975 106 ESD---QFSIEEFIPLLRERMNVLN---PYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (666)
Q Consensus 106 e~~---~f~L~~fIPlL~eri~~~n---p~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~ 178 (666)
+++ +-.++.++|.+...-.+.| --||..++.++..+.. .|...+.+|-|+.+.+|.+.|.|+.+-||+.|..+
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 543 4568999999998777655 4789999999999998 89999999999999999999999999999998654
No 84
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.29 E-value=0.0099 Score=65.63 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=104.8
Q ss_pred HHhhhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhh
Q 005975 27 ETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D-~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
++|...|+--++.-++| .|.-.|+-|.-.|..+.+.-......+-...+-.+.....|+...|-..| +..-+++-.+.
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 77899999999999999 77888887776665554432222222223333344445567777665555 55444433222
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITV-LDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~-L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
+...+..+.|. |...|...-..++..++- +..++..++...+|+|.|++++--.-++..||+.|.-||..+.
T Consensus 404 ---P~~~I~~i~~~----Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 404 ---PLQCIVNISPL----ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---chhHHHHHhhH----HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 12223444444 444555555666667764 4568888999999999999999999999999999999999999
Q ss_pred HHhh
Q 005975 184 QEIK 187 (666)
Q Consensus 184 ~eI~ 187 (666)
..++
T Consensus 477 ~~vG 480 (516)
T KOG2956|consen 477 NRVG 480 (516)
T ss_pred HHHh
Confidence 8886
No 85
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.28 E-value=0.0017 Score=55.32 Aligned_cols=85 Identities=25% Similarity=0.236 Sum_probs=67.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCH
Q 005975 116 IPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (666)
Q Consensus 116 IPlL~eri-~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~ 194 (666)
||.|.+.+ .+.||.+|..++..+..+ .-++.++.|..++.|+++.||.+|..+|+.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 67888888 889999999999888832 23467888888999999999999999888763 2
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 005975 195 GRMAEILVQRAASP-DEFTRLTAITWI 220 (666)
Q Consensus 195 ~~iI~iLl~~~~s~-d~~irl~Al~WL 220 (666)
++.++.|.+.+.++ +..+|..|+.-|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 66889999988775 456788877654
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.051 Score=62.79 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=149.4
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005975 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (666)
Q Consensus 114 ~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d 193 (666)
.+-+-+...+.+..|++|+-++..++-+.--.+..+-+.+|.+.. -|.||++.|..+|.+.+=++.+ +.|. +
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELAr---KnPk-n 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELAR---KNPQ-N 215 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHh---hCCc-c
Confidence 355667777889999999999999997666666667777776666 7899999999999776655554 3332 3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhcCcccccchHhHHHHHhhhhcCCcHHHHH-HHHHHHHHHHHhhCCC
Q 005975 194 YGRMAEILVQRAASPDEFTRLTAITWIN-EFVKLGGDQLVPYYADILGAILPCISDKEEKIRV-VARETNEELRAIKADP 271 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~Al~WL~-~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~-~A~~~n~~L~~~i~~~ 271 (666)
|=.+.|.+.+-+.+... .|+- .++++.+ .+.|+=|++-.-+++-+.+- |+. .|.....+....+-..
T Consensus 216 yL~LAP~ffkllttSsN-------NWmLIKiiKLF~-aLtplEPRLgKKLieplt~l---i~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 216 YLQLAPLFYKLLVTSSN-------NWVLIKLLKLFA-ALTPLEPRLGKKLIEPITEL---MESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred cccccHHHHHHHhccCC-------CeehHHHHHHHh-hccccCchhhhhhhhHHHHH---HHhhHHHHHHHHHHHHheee
Confidence 33333333332222110 2331 2233333 46677777666555544321 111 1222222221111110
Q ss_pred --CCC-CC----hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 272 --ADG-FD----VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 272 --~~~-~d----l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
..+ -| ...-+.-|...+.+++...|.-++..+.-++...|..+..|-+ .++++|+|.++.||..++.++
T Consensus 285 s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 285 SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHH
Confidence 111 12 2333455666777888889999999999999999999998876 467889999999999999999
Q ss_pred HHHhhccchHHHHHHHHHhhcc
Q 005975 345 ACIAKDLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 345 a~Is~~~~~F~~fm~~LL~lf~ 366 (666)
.-|.+ ++....++..|+.++.
T Consensus 361 ~gmVs-kkNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 361 YGMVS-KKNLMEIVKTLMKHVE 381 (877)
T ss_pred HHHhh-hhhHHHHHHHHHHHHH
Confidence 99884 6678888888888774
No 87
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.28 E-value=0.72 Score=54.96 Aligned_cols=227 Identities=13% Similarity=0.191 Sum_probs=147.4
Q ss_pred CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC----------------------CCC------------
Q 005975 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD----------------------PAD------------ 273 (666)
Q Consensus 228 ~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~----------------------~~~------------ 273 (666)
...+.|++|.+|.+|+...+....|+-..-.++.....+.-.+ ++.
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEEL 600 (1005)
T ss_pred ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3467899999999999999888777666655554332211110 000
Q ss_pred ---CCCh----HhHHHHHHHhcCCCc----HHHHHHHHHHHHHHHhhChHHHhh-hhHHHHHHHHHhcCCCC-HHHHHHH
Q 005975 274 ---GFDV----GPILSIATRQLSSEW----EATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPS-DEVVLLV 340 (666)
Q Consensus 274 ---~~dl----~~il~~L~~~L~~~~----~~tR~aaL~WL~~L~~~~p~~i~~-~l~~l~p~LL~~LsD~s-~eVv~~~ 340 (666)
..++ ...+|.+..-+..+. ..-.-.|++-|-.+.++.|..+-. .+...||++.++.-+.+ ++..+.+
T Consensus 601 ~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~ 680 (1005)
T KOG2274|consen 601 LQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNA 680 (1005)
T ss_pred HHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhH
Confidence 0011 234444555554333 334566778888888998877543 55678999999876554 5677777
Q ss_pred HHHHHHHhh----------cc--chHHHHHHHHHhhccccc-----hhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhc
Q 005975 341 LEVHACIAK----------DL--QHFRQLVVFLVHNFRVDN-----SLLEKRGALIIRRLCVLLDA--ERVYRELSTILE 401 (666)
Q Consensus 341 l~lLa~Is~----------~~--~~F~~fm~~LL~lf~~d~-----~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~ 401 (666)
-++|+.+.+ ++ ..|..+|+.+-+++.-+. -..+.=...+|-+....+++ .+|.++.-.-+.
T Consensus 681 ~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 681 TECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQ 760 (1005)
T ss_pred HHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 787776652 12 236678887777775332 12222223377888888876 568887777777
Q ss_pred ccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccCh
Q 005975 402 GEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSP 457 (666)
Q Consensus 402 ~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~ 457 (666)
..+.+.|....|-++.-+..|.. ..+=+-|-. +-.+.|..-|.=+-.-||-+=
T Consensus 761 ~ae~lsviQsLi~VfahL~~t~~--~~~l~FL~S-lp~~~g~~AlefVMteW~srq 813 (1005)
T KOG2274|consen 761 QAETLSVIQSLIMVFAHLVHTDL--DQLLNFLSS-LPGPTGEPALEFVMTEWTSRQ 813 (1005)
T ss_pred HhhhHHHHHHHHHHHHHHhhCCH--HHHHHHHHh-CCCCCCCcHHHHHHHHHHhhh
Confidence 78899998888888877766654 445555655 667888888888899998654
No 88
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.45 Score=56.46 Aligned_cols=147 Identities=17% Similarity=0.146 Sum_probs=87.1
Q ss_pred hhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHH
Q 005975 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (666)
Q Consensus 21 ~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrL 99 (666)
..|.+...+...+++-+ .-.|.++++-.-.=+.+.+|......+.- ...+.|=+.|+++-+|..| ..+..+
T Consensus 48 ~~G~dmssLf~dViK~~----~trd~ElKrL~ylYl~~yak~~P~~~lLa----vNti~kDl~d~N~~iR~~AlR~ls~l 119 (757)
T COG5096 48 SLGEDMSSLFPDVIKNV----ATRDVELKRLLYLYLERYAKLKPELALLA----VNTIQKDLQDPNEEIRGFALRTLSLL 119 (757)
T ss_pred hcCCChHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHhccCHHHHHHH----HHHHHhhccCCCHHHHHHHHHHHHhc
Confidence 35555444444444444 45566677666555666666544443322 3334455678888888777 333222
Q ss_pred HHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH-HHHHHHHhcCCCChhHHHHHHHH
Q 005975 100 VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSA 178 (666)
Q Consensus 100 lKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~-fL~gLf~lLsD~~~eVR~~A~~~ 178 (666)
+ +. + =++.+++++.+++.+.+++||+.|.-++..+-.+.+.-. -.. ..+.+-.++.|++|.|...|-..
T Consensus 120 -~--~~---e-l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~---~~~g~~~~l~~l~~D~dP~Vi~nAl~s 189 (757)
T COG5096 120 -R--VK---E-LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY---HELGLIDILKELVADSDPIVIANALAS 189 (757)
T ss_pred -C--hH---H-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh---hcccHHHHHHHHhhCCCchHHHHHHHH
Confidence 0 11 1 267778888888888888888888777777766544321 111 23334456678888887777777
Q ss_pred HHHHHHH
Q 005975 179 LWEFLQE 185 (666)
Q Consensus 179 L~~fL~e 185 (666)
|...-.+
T Consensus 190 l~~i~~e 196 (757)
T COG5096 190 LAEIDPE 196 (757)
T ss_pred HHHhchh
Confidence 7776666
No 89
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.22 E-value=0.016 Score=69.11 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=159.8
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
++.+-|-+...|-+.+|.-|.-++.-+.-..+-++.+ -..|...+..++-....|.|-.|-..|..+|..+....+...
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 6788899999999999999999998887666655533 345777777777788899999999999999999988776543
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC-
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA- 269 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~- 269 (666)
......+.|.+++++...-...|-.++..++.++... .+.++.+.++..+.+..|.+|..+.......++...
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 3334667899999999988888888888887777633 377899999999999999999887777666665554
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHh
Q 005975 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 315 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~ 315 (666)
.......+..+++.+..+-.|.+.++|.||+.-++.+....++++.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2223344688899999999999999999999999999999887754
No 90
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.18 E-value=0.13 Score=59.15 Aligned_cols=288 Identities=16% Similarity=0.121 Sum_probs=147.4
Q ss_pred HHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005975 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (666)
Q Consensus 74 Ifd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y 152 (666)
-+..+..++.- +..+|.-| ..+.+..|+...- -+.-|.-+.....+.|..||..++--|-.++.-. -.|
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~ 93 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEH 93 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHH
Confidence 34455555543 34455555 7788887755432 1233455566667899999998877776665432 358
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhcCc
Q 005975 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA---SPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 153 Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~---s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
++.+.+.|.++|.-.++..+.++.++|..+++ .|-...+.-+..++. +.|+.+|..++..|.+-+.--+.
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-------~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLK-------QDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 89999999999987788888899999999886 344445555555554 56888999999998765544344
Q ss_pred ccccc----hHhHHHHHhhhhcCC-cHHHHHHHHHHHHHHHHhhCCCC------CCCChHhHHHHHHHhcC-CCc-HHHH
Q 005975 230 QLVPY----YADILGAILPCISDK-EEKIRVVARETNEELRAIKADPA------DGFDVGPILSIATRQLS-SEW-EATR 296 (666)
Q Consensus 230 ~l~py----lp~lL~~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~~~------~~~dl~~il~~L~~~L~-~~~-~~tR 296 (666)
.++.. -.-++..+.+.|.|- ..|.. .+|.++.... ..-...++++.+.++.. +.. ..+=
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~--------l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD 238 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFE--------LFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSD 238 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHH--------HHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSS
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcC
Confidence 44432 122344555566552 22222 2233222111 01113678888887663 111 1111
Q ss_pred HHHHH-HHH-------HHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--c----cchHHHHHHHHH
Q 005975 297 IEALH-WIS-------TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--D----LQHFRQLVVFLV 362 (666)
Q Consensus 297 ~aaL~-WL~-------~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~----~~~F~~fm~~LL 362 (666)
..+++ |+. .+..+. .-..++.-+..-+++.+++=.++....-|.+++.+|. + .+.+..+...|+
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v--~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGV--SSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHhcCCC--ChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 11222 211 111111 1123333344445556666666677778899999983 1 344555666666
Q ss_pred hhccccc-------hhhhhHHHHHHHHHhccCCh
Q 005975 363 HNFRVDN-------SLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 363 ~lf~~d~-------~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
+.++... ..+||= -+...+|+..-+.
T Consensus 317 ~ymP~~~~~~~l~fs~vEcL-L~afh~La~k~p~ 349 (556)
T PF05918_consen 317 KYMPSKKTEPKLQFSYVECL-LYAFHQLARKSPN 349 (556)
T ss_dssp TTS----------HHHHHHH-HHHHHHHHTT-TH
T ss_pred HhCCCCCCCCcccchHhhHH-HHHHHHHhhhCcc
Confidence 6665321 223332 4467777776654
No 91
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.35 Score=54.97 Aligned_cols=372 Identities=15% Similarity=0.130 Sum_probs=203.4
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccccccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~ 111 (666)
.+.=.|++.|+.+|.-.|...--++..+.+++. +++...+.|...+-... +-.||--| +..|.. ++.+...++
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~te-dvlm~tssiMkD~~~g~---~~~~kp~A--iRsL~~-Vid~~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTE-DVLMGTSSIMKDLNGGV---PDDVKPMA--IRSLFS-VIDGETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcch-hhhHHHHHHHHhhccCC---ccccccHH--HHHHHH-hcCcchhhh
Confidence 344567889999999999877666666655432 33333333333332222 22455444 222222 333333343
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh-----------hHHHHHHHHHH
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH-----------EIRQQADSALW 180 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~-----------eVR~~A~~~L~ 180 (666)
.+ -.|...+-+..+.+|..++-.-+.|..+.....-.++++.-+....+-.-|+. -+-+ -.+|+
T Consensus 138 ~e---r~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isq--YHalG 212 (898)
T COG5240 138 FE---RYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQ--YHALG 212 (898)
T ss_pred HH---HHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHH--HHHHH
Confidence 33 34555666777888887776666665555555555555555544433222221 0111 01122
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 181 ~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
-+- .+++....-+-++++.+......++.......+..+.+++.-.+. ++.++.|.+-.-+++..+-+.-.++++
T Consensus 213 lLy-q~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q----~~~q~rpfL~~wls~k~emV~lE~Ar~ 287 (898)
T COG5240 213 LLY-QSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQ----ALLQLRPFLNSWLSDKFEMVFLEAARA 287 (898)
T ss_pred HHH-HHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChH----HHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 111 121111111122222222222222222222233344444443332 244455555556666655555555554
Q ss_pred HHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q 005975 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
.-.+.. +.-..-++++++.+|...|.+....+|-+|++-|..++.++|+.+.--..++ -...+|.+--+-.-+
T Consensus 288 v~~~~~---~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev----EsLIsd~Nr~IstyA 360 (898)
T COG5240 288 VCALSE---ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV----ESLISDENRTISTYA 360 (898)
T ss_pred HHHHHH---hccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH----HHHhhcccccchHHH
Confidence 433321 1112245789999999999999999999999999999999999876544332 233456665555555
Q ss_pred HHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChH--HHHHHHHHhhcccCChHHHHHHHHHHHH
Q 005975 341 LEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--RVYRELSTILEGEADLDFACTMVQALNL 418 (666)
Q Consensus 341 l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E--~Iy~~la~iL~~~~dl~F~~~mVq~Ln~ 418 (666)
..+|-+-+ +++.-+.+|..+..+.++-..-.+.-.---+|-||.+.+.+ .+..-|+++|.++...+|-.-||..+.-
T Consensus 361 ITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 361 ITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred HHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 55554443 34555555555555443322211211233589999999886 4556788899899999999999999988
Q ss_pred HhccchhHHH
Q 005975 419 ILLTSSELSE 428 (666)
Q Consensus 419 iLLTs~El~~ 428 (666)
+.=.-||-.+
T Consensus 440 ~~~~~p~skE 449 (898)
T COG5240 440 AMENDPDSKE 449 (898)
T ss_pred HHhhCchHHH
Confidence 8877666554
No 92
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.075 Score=59.26 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=117.2
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHh-c
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKL-G 227 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~i~l-~ 227 (666)
...+.+++..+..-.+||+..+|..|+.+|+......+.+..-+...++..++..+.+. ++++.++|+.-+...... .
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 35678888888899999999999999999999997754443446788888888777665 578999999988776664 5
Q ss_pred CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHH---HHHhcCCCcHHHHHH
Q 005975 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSI---ATRQLSSEWEATRIE 298 (666)
Q Consensus 228 ~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~---L~~~L~~~~~~tR~a 298 (666)
+.++-+|+=.+--.+-+...+.+++.|..|-...+.|.+..+.+.+.++.+++.+. +.-++.+.+..+-.|
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 77899999899889999999999999999999999999988776666666666643 444556666644333
No 93
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.07 E-value=0.006 Score=59.62 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=98.9
Q ss_pred cccchHhHHHHHhhhhcC------------------CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc
Q 005975 231 LVPYYADILGAILPCISD------------------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (666)
Q Consensus 231 l~pylp~lL~~LL~~Lsd------------------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~ 292 (666)
+.|+++.++|.+..-+.- ..-|+|++|-++..++++... ..+|+..+++.+...+.| +
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~---~~~~~~~~~~~v~~GL~D-~ 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCL---SRIDISEFLDRVEAGLKD-E 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTC---SSS-HHHHHHHHHHTTSS--
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHhhcCC-c
Confidence 578899999999987653 234999999999999998654 467899999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC----CC--------CHHHHHHHHHHHHHHh------hccc-h
Q 005975 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----DP--------SDEVVLLVLEVHACIA------KDLQ-H 353 (666)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls----D~--------s~eVv~~~l~lLa~Is------~~~~-~ 353 (666)
.+.|+-|..-+.-++..+|..+.+.++.+.+.+-+.|+ +. ..|..+.++.+...+. +... .
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~ 158 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNK 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-H
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHH
Confidence 88999999999999999999999999999999988884 22 3456667777777773 1233 6
Q ss_pred HHHHHHHH
Q 005975 354 FRQLVVFL 361 (666)
Q Consensus 354 F~~fm~~L 361 (666)
|..|+..+
T Consensus 159 ~~~f~~~i 166 (169)
T PF08623_consen 159 WNEFVEWI 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 94
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.03 E-value=0.012 Score=62.23 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=106.6
Q ss_pred hHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh---h---hhHHHHHHHHHHhhc--------CCchhHH
Q 005975 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---I---IFFNQIFDALCKLSA--------DSDANVQ 90 (666)
Q Consensus 25 ~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i---l---~~f~eIfd~L~kl~~--------D~d~~Vr 90 (666)
.++.+...++|++|.-+.|.+..+|..+|..+..+.+.+.... + ..+..+.++|..++. |....+-
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 4567889999999999999999999999999999987655433 2 346677788887776 5556666
Q ss_pred HHH-HHHHHHHHHhhcccccccHhhhHHHHHH----hh-cCC---CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 91 SAA-HLLDRLVKDIVTESDQFSIEEFIPLLRE----RM-NVL---NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 91 ~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~e----ri-~~~---np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
..| .+|-++++-.-.+.+.--...+.-.+.+ -+ ... ++.+|.+++.-+..+.+..|.....|+..+++.|.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 666 6777776643322221112333333333 22 223 49999999999999999999999999999999999
Q ss_pred HhcCCCC
Q 005975 162 NMLSDSS 168 (666)
Q Consensus 162 ~lLsD~~ 168 (666)
.++.||.
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 9999875
No 95
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.02 E-value=0.43 Score=61.80 Aligned_cols=315 Identities=13% Similarity=0.161 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh----cCCchhHHHHHHHHHHHHH---Hhhc--ccccccH-hhhHHH
Q 005975 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS----ADSDANVQSAAHLLDRLVK---DIVT--ESDQFSI-EEFIPL 118 (666)
Q Consensus 49 R~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~----~D~d~~Vr~gA~~LdrLlK---DIv~--e~~~f~L-~~fIPl 118 (666)
|.+....|..|+..-.+.+...|..+|+.+...+ +.++..| +..++|.|-+ .... |...|.. ..|+-+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~v--a~fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSI--AIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhH--HHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 5666555555554433455557788888887643 3334344 3345664322 1211 2222332 356666
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc-CC---CCC
Q 005975 119 LRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SP---SVD 193 (666)
Q Consensus 119 L~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~-~~---~~d 193 (666)
+..-|. ..+..+|.+++.++.++.......+-.=...++..+-....|.++++-..|-+.+.....+.-. -+ .-.
T Consensus 1187 fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1187 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 666554 4778999999999999887777777777777787777777888888877777777665554211 11 124
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH----HHhc--------------------------------CcccccchH
Q 005975 194 YGRMAEILVQRAASP-DEFTRLTAITWINEF----VKLG--------------------------------GDQLVPYYA 236 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~----i~l~--------------------------------~~~l~pylp 236 (666)
+...|..+...+... +..+-++|+.-+..+ .+.. .++...+.=
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 678888888877554 456777776643322 1100 001112333
Q ss_pred hHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC-------hH----hHHHHHHHhcC----------------
Q 005975 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-------VG----PILSIATRQLS---------------- 289 (666)
Q Consensus 237 ~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d-------l~----~il~~L~~~L~---------------- 289 (666)
.+|-++-....|..+|||..|-++.-..++.- +..+. +. ++++.+.....
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y---G~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~ 1423 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNH---GHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQ 1423 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 44555555566889999999887765555433 33332 22 22233332111
Q ss_pred ----CCcH--HHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-h-----ccchHHHH
Q 005975 290 ----SEWE--ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-K-----DLQHFRQL 357 (666)
Q Consensus 290 ----~~~~--~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is-~-----~~~~F~~f 357 (666)
...| .|-.-||.-++.+..++-+.+.+.+++++..|..+...+++.+....+..|.++. . ++++-+.+
T Consensus 1424 ~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i 1503 (1780)
T PLN03076 1424 GELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEV 1503 (1780)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 0113 5677777888888888888999999999999999999999999888888777766 2 24555668
Q ss_pred HHHHHhhcccc
Q 005975 358 VVFLVHNFRVD 368 (666)
Q Consensus 358 m~~LL~lf~~d 368 (666)
+..+.++|...
T Consensus 1504 ~~~~~~lf~~T 1514 (1780)
T PLN03076 1504 VLSLKEAANAT 1514 (1780)
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 96
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.98 E-value=0.031 Score=59.90 Aligned_cols=209 Identities=18% Similarity=0.185 Sum_probs=141.3
Q ss_pred HHHHHH---HHHHHHHHhhcccccc----cHhhhHHHHHHhhcCCC-HHHHHHHHHHHHHhhc-CCchhhhhchHHHHHH
Q 005975 89 VQSAAH---LLDRLVKDIVTESDQF----SIEEFIPLLRERMNVLN-PYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDG 159 (666)
Q Consensus 89 Vr~gA~---~LdrLlKDIv~e~~~f----~L~~fIPlL~eri~~~n-p~vR~~alswL~~L~s-vp~~~Li~yLp~fL~g 159 (666)
+++.|+ .|.++.|.+-.....+ .-..+--.|.+|+.-.= .-|=+-+++--..+-+ +....+...++-+.+|
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~G 101 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPG 101 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHH
Confidence 455563 5666766555121111 12344556777776432 3677778877775544 5556789999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHH
Q 005975 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL 239 (666)
Q Consensus 160 Lf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL 239 (666)
||.+++-..-.||-.- ++-+++ .++.+++ .+.|.++.++
T Consensus 102 Lfpl~~~asi~Vkp~l-------L~i~e~---------------------------------~~lpL~~-~L~p~l~~li 140 (307)
T PF04118_consen 102 LFPLFSYASIQVKPQL-------LDIYEK---------------------------------YYLPLGP-ALRPCLKGLI 140 (307)
T ss_pred HHHHHHHHHHhhHHHH-------HHHHHH---------------------------------HhcCccH-HHHHHHHHHH
Confidence 9999988888887643 332211 1234555 8899999999
Q ss_pred HHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--------
Q 005975 240 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-------- 311 (666)
Q Consensus 240 ~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p-------- 311 (666)
.+++|.+.|+..|.-+.+.+..+.+...++++ .-++.+..++. .+...|..|+.|+..-..+..
T Consensus 141 ~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~ 212 (307)
T PF04118_consen 141 LSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSS 212 (307)
T ss_pred HHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccch
Confidence 99999999999898888888888887776642 22344444443 456789999999986555533
Q ss_pred ---HHHhh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 312 ---TEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 312 ---~~i~~-~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
..+.+ --.-++.++..+|.|++--|++.++.+|-.
T Consensus 213 ~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 213 EEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 12222 223377889999999988888888886544
No 97
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.93 E-value=0.27 Score=61.20 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=110.4
Q ss_pred HHHHhhhh--hhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH
Q 005975 16 FLLYADLF--FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (666)
Q Consensus 16 ~~~~~~~~--~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA 93 (666)
.|+|-.++ ..+..-.+..+..|+..++.+...+|--|.-++.+|+.+ ...++ .-+++-.++-.-+.|+..+||+||
T Consensus 798 ~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~-Dp~vL-~~~dvq~~Vh~R~~DssasVREAa 875 (1692)
T KOG1020|consen 798 KLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA-DPSVL-SRPDVQEAVHGRLNDSSASVREAA 875 (1692)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc-ChHhh-cCHHHHHHHHHhhccchhHHHHHH
Confidence 35444444 444555677888899999999999999999999998763 22333 346777777777899999999999
Q ss_pred -HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCCChhH
Q 005975 94 -HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEI 171 (666)
Q Consensus 94 -~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lLsD~~~eV 171 (666)
+++.|.+-.+- -...++-..+.+||.+..-.||+-++..+.-++. .|+.. -.|++...+.+-.+|....|
T Consensus 876 ldLvGrfvl~~~-----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~---~i~~~cakmlrRv~DEEg~I 947 (1692)
T KOG1020|consen 876 LDLVGRFVLSIP-----ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS---KIVDMCAKMLRRVNDEEGNI 947 (1692)
T ss_pred HHHHhhhhhccH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHhccchhHH
Confidence 88777643211 2356777788888888888999988888886654 44332 23444555555567777778
Q ss_pred HHHHHHHHHHH
Q 005975 172 RQQADSALWEF 182 (666)
Q Consensus 172 R~~A~~~L~~f 182 (666)
.+.+++.+-.+
T Consensus 948 ~kLv~etf~kl 958 (1692)
T KOG1020|consen 948 KKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHHHH
Confidence 88887755554
No 98
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.18 Score=58.44 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=112.5
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i-l~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.++++...++++...+|..|||-.|.-+..+... -+++ -.-||.+...+.+-+-|.+|+||-.| -+|.++-.|=-.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 5777888899999999999999999876655431 1222 13478888888888899999999988 677776432111
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
..+++....-.+.+ +++++.||..+++.|.+=.+ -+|-+++ -.-|.+..+|+.+-+ ..+..|
T Consensus 160 -ee~~v~n~l~~liq--nDpS~EVRRaaLsnI~vdns--------Tlp~Ive----RarDV~~anRrlvY~---r~lpki 221 (892)
T KOG2025|consen 160 -EECPVVNLLKDLIQ--NDPSDEVRRAALSNISVDNS--------TLPCIVE----RARDVSGANRRLVYE---RCLPKI 221 (892)
T ss_pred -CcccHHHHHHHHHh--cCCcHHHHHHHHHhhccCcc--------cchhHHH----HhhhhhHHHHHHHHH---Hhhhhh
Confidence 12333222222222 68999999999998874222 2344444 677888889988754 555544
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLT-----AITWIN 221 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~-----Al~WL~ 221 (666)
.-...+.+.-+-.|-..+.+.+..++.. +-.|+.
T Consensus 222 -d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~ 260 (892)
T KOG2025|consen 222 -DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLR 260 (892)
T ss_pred -hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh
Confidence 2123455666777777777766655543 334764
No 99
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.70 E-value=0.1 Score=59.85 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=98.3
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhh
Q 005975 167 SSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 245 (666)
Q Consensus 167 ~~~eVR~~A~~~L~~fL~eI~~~~~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~ 245 (666)
.+..+++.|.+.+.+|-+.+ .++ +.-++.+++-|.+.|..||..|+.-|-.++.-.+ .|++++..+|..+
T Consensus 34 g~~k~K~Laaq~I~kffk~F-----P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF-----PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHH
Confidence 46789999999999988755 333 5688999999999999999999988876665443 3689999999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChHHHhh----hh
Q 005975 246 ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLH----FL 318 (666)
Q Consensus 246 Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~---~~~~~tR~aaL~WL~~L~~~~p~~i~~----~l 318 (666)
|..+++.-..++.++.-++++.- -..++..+..++. +.++.+|+.++.+|..=....+.++.. .-
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HhcccHHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 99888887888888777776542 3466777777765 567889999999987555444433332 11
Q ss_pred HHHHHHHHHhcCCC
Q 005975 319 NDIFDTLLKALSDP 332 (666)
Q Consensus 319 ~~l~p~LL~~LsD~ 332 (666)
.-++..+.+.|.|-
T Consensus 177 ~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 177 EFIVDEIKKVLQDV 190 (556)
T ss_dssp HHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhc
Confidence 22334444556553
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.28 Score=57.23 Aligned_cols=310 Identities=17% Similarity=0.224 Sum_probs=171.4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005975 74 IFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (666)
Q Consensus 74 Ifd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL 153 (666)
+=+++-+-++.|+.=+|+.. |.-++| .. .+--++.|+|.++.|+.+.+++||..|+-+|..+-.. ..+|++--
T Consensus 100 vcna~RkDLQHPNEyiRG~T--LRFLck--Lk--E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDa 172 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGST--LRFLCK--LK--EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDA 172 (948)
T ss_pred HHHHHhhhccCchHhhcchh--hhhhhh--cC--cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCCh
Confidence 33444455566666666443 222333 11 1234889999999999999999999988777765554 44566777
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHhcCcc
Q 005975 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP---DEFTRLTAITWINEFVKLGGDQ 230 (666)
Q Consensus 154 p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~---d~~irl~Al~WL~~~i~l~~~~ 230 (666)
|+++...+ ..+.++..++.| |+.-+ +.|=+.-++|+..+..+- ++..++..++.|...+...|..
T Consensus 173 peLi~~fL--~~e~DpsCkRNA------Fi~L~----~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~ 240 (948)
T KOG1058|consen 173 PELIESFL--LTEQDPSCKRNA------FLMLF----TTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE 240 (948)
T ss_pred HHHHHHHH--HhccCchhHHHH------HHHHH----hcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH
Confidence 77776543 567777777754 32222 245666777777665443 4667777777777666533332
Q ss_pred cccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhh
Q 005975 231 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNR 309 (666)
Q Consensus 231 l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~ 309 (666)
= .+.+..+...|..+++.++-.|..+. ..+-.+ .--+.+-.+.+...+. -++-.++.-.++-|..+...
T Consensus 241 ~----~~~i~~i~~lL~stssaV~fEaa~tl---v~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~ 310 (948)
T KOG1058|consen 241 K----ARYIRCIYNLLSSTSSAVIFEAAGTL---VTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKAL 310 (948)
T ss_pred h----hHHHHHHHHHHhcCCchhhhhhcceE---EEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence 2 23344444455555555554443221 111110 0001122222223222 12233566666666666622
Q ss_pred ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcc-ccchhhhhHH---HHHHHHHhc
Q 005975 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR-VDNSLLEKRG---ALIIRRLCV 385 (666)
Q Consensus 310 ~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~-~d~~lLe~Rg---~~IIR~Lc~ 385 (666)
. ..-+.+++-.+|..|+-++=+|+++++.+--.+++ ...+.+++.-|-+.+- ++..-.++-| .+.|+.+..
T Consensus 311 ~----~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ 385 (948)
T KOG1058|consen 311 H----EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA 385 (948)
T ss_pred h----HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence 2 23456777788899999999999999997666663 3567777777777663 2221122222 334554433
Q ss_pred c---CC--hHHHHHHHHHhhccc------CChHHHHHHHHHHH
Q 005975 386 L---LD--AERVYRELSTILEGE------ADLDFACTMVQALN 417 (666)
Q Consensus 386 ~---L~--~E~Iy~~la~iL~~~------~dl~F~~~mVq~Ln 417 (666)
. .+ ++.+-..+-+.+.+. .=+.|++-.++.+-
T Consensus 386 cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 386 CAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 2 11 134444444444432 22667777776653
No 101
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.64 E-value=0.052 Score=52.94 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=112.8
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHhhc
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li~yLp~fL~gLf~lLsD~~-~eVR~~A~~~L~~fL~eI~~ 188 (666)
.+.+++-.+...+.+.+++.|-..+.-+.++....+ .-|..+-..++.+|.+.+..++ +.+++.|+.+|..+...+..
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 477778888888999999999999999998888764 4455899999999999998764 56899999999999988877
Q ss_pred CCC-------CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh
Q 005975 189 SPS-------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (666)
Q Consensus 189 ~~~-------~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~L 246 (666)
.|. ..++.+++.++.-.++ +.....++.-+..++...|..+.||..++=..+.+.+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 664 3578888888887775 5667788999999999999999999999988888765
No 102
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.62 E-value=0.44 Score=51.28 Aligned_cols=218 Identities=20% Similarity=0.164 Sum_probs=138.0
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHhh--c
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDA-NVQSAAHLLDRLVKDIV--T 105 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv--~r~~il~~f~eIfd~L~kl~~D~d~-~Vr~gA~~LdrLlKDIv--~ 105 (666)
+.-+...+..+.|+....|..|.+.+.++.+. ..+.+..+...+.+.+.+.+.-+.+ ...-|+.++.-++-.+. .
T Consensus 42 e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 34466777888999999999999998887533 2345557788999999998865544 22223344444444433 2
Q ss_pred ccccccHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhh--hhchHHHHHHHHHhc---CCC---------Ch
Q 005975 106 ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDM--LGFLPDFLDGLFNML---SDS---------SH 169 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~--~np~vR~~alswL~~L~svp~~~L--i~yLp~fL~gLf~lL---sD~---------~~ 169 (666)
+...+ .+.+.|.|..-+.+ ..+.+|..++.++..+.-+.+.+. +...-+.++++|... +|. ++
T Consensus 122 ~~~ei-~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 122 DSEEI-FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred cHHHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 22222 67888988888876 457889888877776554433332 222235566665432 222 35
Q ss_pred hHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc---cc-ccchHhHHHHHhh
Q 005975 170 EIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QL-VPYYADILGAILP 244 (666)
Q Consensus 170 eVR~~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~---~l-~pylp~lL~~LL~ 244 (666)
.|..+|.++-.-++..+... ....+...++.+...+.++|..+|..|=+-|.-+.+.... ++ .+..+.++..+-.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~ 280 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRE 280 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHH
Confidence 68888888887777655321 0112467889999999999999999998888777666542 32 3444444444433
Q ss_pred hhcCC
Q 005975 245 CISDK 249 (666)
Q Consensus 245 ~Lsd~ 249 (666)
...++
T Consensus 281 La~dS 285 (309)
T PF05004_consen 281 LATDS 285 (309)
T ss_pred HHHhc
Confidence 33343
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.57 E-value=0.083 Score=55.22 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=117.6
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHhhcC-CchhHHHHH-HHHHHHHHHhhccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r--~~il~~f~eIfd~L~kl~~D-~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
..++.|..-+.|+++.+|..|..++.|++-... +.+..|++++.... .++ -+..++-+| .+|..+ -+++.
T Consensus 54 Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~---~s~~lns~~Q~agLrlL~nL---tv~~~ 127 (254)
T PF04826_consen 54 GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET---VSSPLNSEVQLAGLRLLTNL---TVTND 127 (254)
T ss_pred CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHcc---CCCcc
Confidence 367899999999999999999999999863322 23334444443333 233 366777666 554444 23333
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHH
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~--~~Li~yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~ 184 (666)
...-+...+|.+.+.+...+..+|..++..+.+|..-|. .+++.- .-+..+..++.. .++++-..+-.....+-+
T Consensus 128 ~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~--q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 128 YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA--QVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc--cchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 334466678888888888999999999999999988776 344432 334444445544 467777766677777766
Q ss_pred HhhcCCC------C----------CHHHHHHHHHHhcCCCCHHHHHHH
Q 005975 185 EIKNSPS------V----------DYGRMAEILVQRAASPDEFTRLTA 216 (666)
Q Consensus 185 eI~~~~~------~----------d~~~iI~iLl~~~~s~d~~irl~A 216 (666)
-+++... + +.+.+...|..-..++|+++|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 206 NIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 6665421 1 235577777777888999998754
No 104
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.51 E-value=0.33 Score=52.19 Aligned_cols=212 Identities=15% Similarity=0.129 Sum_probs=131.8
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHhhccc-c---cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--Cchh
Q 005975 75 FDALCKLSADSDANVQSAAHLLDRLVKDIVTES-D---QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV--PDID 148 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~-~---~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~sv--p~~~ 148 (666)
+......+.|.....|.+| |..+++.+...- . .-....+++.+...++-..+.-+..++..+..+.-. ++.+
T Consensus 45 L~~~Id~l~eK~~~~Re~a--L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAA--LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 3334444566778888888 333333332211 1 112456677778888776666677788888877554 3455
Q ss_pred hhhchHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHhhcCCCCCHH---HHHH--HHHHhcCC----------CCHH
Q 005975 149 MLGFLPDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSVDYG---RMAE--ILVQRAAS----------PDEF 211 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~--~eVR~~A~~~L~~fL~eI~~~~~~d~~---~iI~--iLl~~~~s----------~d~~ 211 (666)
--..+..+.+.|.+.+.|.. ..+|.+|+.||+-..-.... ..-+.. +.++ +....... +++.
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 66778888888999998865 46778888888776532221 112344 3444 22222221 1245
Q ss_pred HHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCC---CChHhHHHHHHHh
Q 005975 212 TRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQ 287 (666)
Q Consensus 212 irl~Al~WL~~~i~l-~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~---~dl~~il~~L~~~ 287 (666)
+.-.|+.-+.-++.. ++..+..++...+|.+...|..++.++|-+|.++..-+.+...+..+. -+.+.+++.+.+.
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L 281 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL 281 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 777788733445544 444566778889999999999999999999999988777776543222 2345665555554
Q ss_pred cC
Q 005975 288 LS 289 (666)
Q Consensus 288 L~ 289 (666)
-.
T Consensus 282 a~ 283 (309)
T PF05004_consen 282 AT 283 (309)
T ss_pred HH
Confidence 43
No 105
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.39 Score=53.77 Aligned_cols=262 Identities=17% Similarity=0.107 Sum_probs=161.5
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC-chhHHHHH-HHHHHHHHHhhcc
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~-d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
-+..++-.......|++..+|..||-.|.|.+..+......+-..+++++...+.|. +..|.--| .+|.+++.-++..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 345556666777899999999999999999998877777778888999999777555 45665555 4555554433321
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHH---HHHhcCCCChhHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDG---LFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~g---Lf~lLsD~~~eVR~~A~~~L~~f 182 (666)
.=.+.+-.+.-.++..+.+.+++.|..+......|....+..--. +...+.++ +.--+.|+++-|-.++.. ...+
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~-~~~~ 413 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS-ELRT 413 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH-HHHh
Confidence 101112223334566677899999999999999888877654333 22334433 344678999998887633 2222
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcCCC--CHHH-HHHH--HHHHHHHHHhcCcccccchHhHHHHHhhh----hcCCcHHH
Q 005975 183 LQEIKNSPSVDYGRMAEILVQRAASP--DEFT-RLTA--ITWINEFVKLGGDQLVPYYADILGAILPC----ISDKEEKI 253 (666)
Q Consensus 183 L~eI~~~~~~d~~~iI~iLl~~~~s~--d~~i-rl~A--l~WL~~~i~l~~~~l~pylp~lL~~LL~~----Lsd~~~eI 253 (666)
+ ++++.-..+.+.... |... +..+ -.|.. .+.++.|+++-.++.. ++.+-+.+
T Consensus 414 c----------~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~--------~L~~i~~d~l~~~~t~~~~~f~sswe~v 475 (533)
T KOG2032|consen 414 C----------YPNLVRKELYHLFQESLDTDMARFQAFYNQWCI--------QLNHIHPDILMLLLTEDQHIFSSSWEQV 475 (533)
T ss_pred c----------CchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHH--------HHhhhCHHHHHHHHHhchhheecchHHH
Confidence 2 122222222221111 1111 2111 12432 3456677776655543 33456789
Q ss_pred HHHHHHHHHHHHHhhCCC-CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005975 254 RVVARETNEELRAIKADP-ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (666)
Q Consensus 254 R~~A~~~n~~L~~~i~~~-~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (666)
|..|..-.+.+...+.+. -...|...+...+.....++-.+++-+|...+..+..+
T Consensus 476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 988876555544333221 11245678888899999999999999999888877654
No 106
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.8 Score=53.94 Aligned_cols=273 Identities=15% Similarity=0.154 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhc--------CCCHHHHHHHHHHHHHhh
Q 005975 72 NQIFDALCKLSADS-DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVLD 142 (666)
Q Consensus 72 ~eIfd~L~kl~~D~-d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~--------~~np~vR~~alswL~~L~ 142 (666)
+-+..++++++.|. |.-||-+|. +.+|-.|.+ -.|+-+.|.|.+-.++. ...-++|..+++-++.+.
T Consensus 525 ~l~Y~a~lnLL~d~~D~vV~Ltt~---~tlkl~vDD-~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 525 PLLYCAFLNLLQDQNDLVVRLTTA---RTLKLVVDD-WNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HHHHHHHHHhcCccccceeehHHH---HHHHHhhhh-ccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 46677888999998 778887662 234444433 35777788887744442 345578888988888776
Q ss_pred cCCchhhhhchHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHH---HHHH
Q 005975 143 SVPDIDMLGFLPDFLDGLFNML--SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR---LTAI 217 (666)
Q Consensus 143 svp~~~Li~yLp~fL~gLf~lL--sD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~ir---l~Al 217 (666)
.-.+..+.+|.-.++.-|-++= +...+-.|.+.-.+|..|+..++..+..-++-+.|++-.++.-..++.. .-++
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgm 680 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGM 680 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHH
Confidence 5544444455444444332211 2244557888888899999999887766677778887777654443321 2245
Q ss_pred H-HHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCCh-HhHHHHHHHhcCCCcHHH
Q 005975 218 T-WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEAT 295 (666)
Q Consensus 218 ~-WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~~~~~t 295 (666)
+ |...+... ..+-|-+=.+.|-+++.+.-+.+..|.+-.-.+...+ +..+..--++ ..+.+.+.+.+.+-..+.
T Consensus 681 eLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYil--Ld~~~fl~~y~~~i~k~~~~~l~dvr~eg 756 (978)
T KOG1993|consen 681 ELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYIL--LDNTVFLNDYAFGIFKKLNDLLDDVRNEG 756 (978)
T ss_pred HHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5 77654433 2344444455555565555555555544333222111 0000000011 355566666665544444
Q ss_pred HHHHHHHHHHHHhhChHHHhh--hhHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHh-hccchH
Q 005975 296 RIEALHWISTLLNRHRTEVLH--FLNDIFDTLLKA--LSDPSDEVVLLVLEVHACIA-KDLQHF 354 (666)
Q Consensus 296 R~aaL~WL~~L~~~~p~~i~~--~l~~l~p~LL~~--LsD~s~eVv~~~l~lLa~Is-~~~~~F 354 (666)
-.+.+.-+-.+.+..| +.. +...++|.++.+ .+|+.|-|-..-+.+.+||+ -|...|
T Consensus 757 l~avLkiveili~t~~--il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ 818 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP--ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLF 818 (978)
T ss_pred HHHHHHHHHHHHhhhH--HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHH
Confidence 4444443333333333 333 444555555554 46888999889999999999 344444
No 107
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.23 Score=58.39 Aligned_cols=279 Identities=16% Similarity=0.217 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH-HhhcCCchhH--HHHH-HHHHHH-HHHhhcc-----------
Q 005975 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADSDANV--QSAA-HLLDRL-VKDIVTE----------- 106 (666)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~-kl~~D~d~~V--r~gA-~~LdrL-lKDIv~e----------- 106 (666)
|-|.| |..||+-+..+.+...+.+...|......+. +..+++..+- |..| -+..++ +|.-.+.
T Consensus 374 DvdTR-RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 374 DVDTR-RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred Ccchh-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 33444 6678998888888777777777766666666 4556665443 4444 222222 1110011
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
...|-...++|-|..+=...+|-.|.-++..+..+-+.++ ..++.++|.+.. .+.-...-|-+-|..++..++..
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~----~L~a~s~vvhsYAA~aiEkil~v 528 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIR----FLEAESRVVHSYAAIAIEKLLTV 528 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHH----hccCcchHHHHHHHHHHHhcccc
Confidence 1245566777777665555778899999999998877554 456666666555 66667888999999999999865
Q ss_pred hhcCCC-----CCHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC--C---cH
Q 005975 186 IKNSPS-----VDYGRMAEILVQ----RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD--K---EE 251 (666)
Q Consensus 186 I~~~~~-----~d~~~iI~iLl~----~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd--~---~~ 251 (666)
-.+++. -++...+..++. +...++...-...+..|..++.+.++...||.|.+++.+-..+.. . +|
T Consensus 529 re~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P 608 (960)
T KOG1992|consen 529 RENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNP 608 (960)
T ss_pred ccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCc
Confidence 544221 134444444443 333444322233455566677788888888888888766554431 1 11
Q ss_pred HHHHHHHHHHHHHHHh-hCCCCCCCC-h-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHH
Q 005975 252 KIRVVARETNEELRAI-KADPADGFD-V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (666)
Q Consensus 252 eIR~~A~~~n~~L~~~-i~~~~~~~d-l-~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL 326 (666)
.--.---++.+.+.+. ....+..+. + .+++++...-|..+-.+--=-+++-+..+.+.+...+-+.+..++|.||
T Consensus 609 ~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 609 QFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred hhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 1000000111111111 111111110 1 3555555555544334444456666777777766655555555555554
No 108
>PF05536 Neurochondrin: Neurochondrin
Probab=96.35 E-value=3 Score=48.42 Aligned_cols=231 Identities=14% Similarity=0.126 Sum_probs=144.6
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHHH-----HHhhcC-------CchhHHHHH-HHHH
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDAL-----CKLSAD-------SDANVQSAA-HLLD 97 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il--~~f~eIfd~L-----~kl~~D-------~d~~Vr~gA-~~Ld 97 (666)
-+..+++-+..++..-|.+|.--+ .|.+++.-. ..-..||+++ -+++.. +....+.-| ..|.
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lv---tk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLV---TKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHH---HHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 355677778777766666655444 444443221 1112344433 233321 112334444 4555
Q ss_pred HHHHHhhcc-cccccHhhhHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHH
Q 005975 98 RLVKDIVTE-SDQFSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (666)
Q Consensus 98 rLlKDIv~e-~~~f~L~~fIPlL~eri~~~np-~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A 175 (666)
+++-| .+ .....+-.-||.|.+.+..... .+-.-+++++..+.+.|...-.-.=..-++.|+..+.+ ++-....|
T Consensus 83 ~f~~~--~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 83 AFCRD--PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HHcCC--hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence 55441 11 1235577889999999987666 88899999999999888754222223455666666655 55667777
Q ss_pred HHHHHHHHHHhhcCC----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc------ccccchHhHHHHHhhh
Q 005975 176 DSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD------QLVPYYADILGAILPC 245 (666)
Q Consensus 176 ~~~L~~fL~eI~~~~----~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~------~l~pylp~lL~~LL~~ 245 (666)
...+..++....... ...+..+++.+-......+...|.++++-+..|+...+. .--.+.+.+..+|-..
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 788888877654221 123567777777777777778889999999988877631 1123566777777776
Q ss_pred hcC-CcHHHHHHHHHHHHHHHHhhC
Q 005975 246 ISD-KEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 246 Lsd-~~~eIR~~A~~~n~~L~~~i~ 269 (666)
+.. ..++-|..|......+++..+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 664 468889999888888887754
No 109
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.33 E-value=0.1 Score=54.59 Aligned_cols=183 Identities=20% Similarity=0.209 Sum_probs=113.0
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccc
Q 005975 34 VPPVLNSFS-DQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (666)
Q Consensus 34 l~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv-~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f 110 (666)
+..++..+. .+|+.++..|.-++.|.+.- ...++... -..++.+.+++.++++.||.-| .+|+.+.- ...+.-
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~---~~en~~ 89 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSV---NDENQE 89 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCC---ChhhHH
Confidence 456677776 56899999999999997521 11122111 1345667788999999999877 66665422 111233
Q ss_pred cHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 111 SIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 111 ~L~~fIPlL~eri~~--~np~vR~~alswL~~L~svp~--~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
-+..+++.+.+.+-+ -|+.+....+..+.++.-..+ .-+..|+| .++.++.-.+..+|..+-++|..+-..-
T Consensus 90 ~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~----~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIP----DLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHH----HHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 467788888887755 478888888888888743332 22444555 4556787788889888777666655311
Q ss_pred hcCCCCCH--HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHh
Q 005975 187 KNSPSVDY--GRMAEILVQRAAS-PDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 187 ~~~~~~d~--~~iI~iLl~~~~s-~d~~irl~Al~WL~~~i~l 226 (666)
... .++ .+....++.-.+. .+.++-+.++.|...+..-
T Consensus 166 ~~~--~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMT--RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHH--HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 000 000 1222333333333 3567778888888877553
No 110
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.32 E-value=0.99 Score=51.49 Aligned_cols=307 Identities=16% Similarity=0.108 Sum_probs=176.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch------------hHHHHH-HHHHHHHHHhhc
Q 005975 39 NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA------------NVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 39 ~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~------------~Vr~gA-~~LdrLlKDIv~ 105 (666)
.++-|+...+|.+|.-.-|.+--+....+-.|.||.-++...+.+-+.. ..+-.| .+|.++=+
T Consensus 144 ~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr---- 219 (898)
T COG5240 144 QAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKR---- 219 (898)
T ss_pred hhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhc----
Confidence 4566788888888866666654333334456778888888776544322 222223 23333211
Q ss_pred ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
.+...+.+++..+.+-....|.-....++-.+.-+..-.. ..+..+-+-|-.+++|...-|--.|..++.+|..+
T Consensus 220 -~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~----q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~ 294 (898)
T COG5240 220 -TDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENS----QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE 294 (898)
T ss_pred -ccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhCh----HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh
Confidence 1222344455555544444555555555555543332221 12333344445677887777777777777776543
Q ss_pred hhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Q 005975 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (666)
Q Consensus 186 I~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (666)
- ...-+++..|..|-..+.++.-..|..|+..++++....|.... -+=+.+-..++|.+.. .+.-+..+|+
T Consensus 295 n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~---IstyAITtLL 365 (898)
T COG5240 295 N--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRT---ISTYAITTLL 365 (898)
T ss_pred c--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee----ecChhHHHHhhccccc---chHHHHHHHH
Confidence 2 12346788999999999999999999999999998887775532 2223344455566544 3444455555
Q ss_pred HhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHH------------HHHhcCC--
Q 005975 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT------------LLKALSD-- 331 (666)
Q Consensus 266 ~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~------------LL~~LsD-- 331 (666)
+-.. .-.++.+++.+.....|-+..-++-+++.+..|..++|.+-..+++-+... ++..++|
T Consensus 366 KTGt----~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 366 KTGT----EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAM 441 (898)
T ss_pred HcCc----hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4432 233456666555555443333455555666666666665544444332222 2222332
Q ss_pred -CCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcccc
Q 005975 332 -PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 332 -~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d 368 (666)
..|+..+.+++.|+.+-+ +-.|.++...+|..+-.+
T Consensus 442 ~~~p~skEraLe~LC~fIE-Dcey~~I~vrIL~iLG~E 478 (898)
T COG5240 442 ENDPDSKERALEVLCTFIE-DCEYHQITVRILGILGRE 478 (898)
T ss_pred hhCchHHHHHHHHHHHHHh-hcchhHHHHHHHHHhccc
Confidence 246677788888888775 456777888888877555
No 111
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.29 E-value=0.0067 Score=42.24 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 156 fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
+++.++++++|++++||.+|..+|+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47788899999999999999999999886
No 112
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.23 E-value=0.37 Score=53.70 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=133.5
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CC---CCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 005975 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PS---VDYGRMAEILVQRAAS-PDEFTRLTAITWINEFVK 225 (666)
Q Consensus 151 ~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~-~~---~d~~~iI~iLl~~~~s-~d~~irl~Al~WL~~~i~ 225 (666)
++-+-+.+-|-++-++...+=|+.|.. ++.+.+... .. -+|.+|+..+++-+.+ .++-+|..|+.-|.+++.
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~als---el~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEALS---ELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHHHH---HHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 334444444444444435556665544 333333221 11 2478899999999988 677789999999999999
Q ss_pred hcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005975 226 LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST 305 (666)
Q Consensus 226 l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~ 305 (666)
-.+..|..+..-.+.-+|.+-.|+++++-.+|.++.-..+.... .+..++ .+...+...+++.-.++++-+-.
T Consensus 360 ~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~------P~~~I~-~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 360 NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL------PLQCIV-NISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC------chhHHH-HHhhHHhcCcchHHHHHHHHHHH
Confidence 99999999999999999999999998877777665443333221 123333 34444444778888999988888
Q ss_pred HHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 306 LLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 306 L~~~~-p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+.+.. .+++.+.++++.|.+++.....+..||+.+.-.|-.+.
T Consensus 433 l~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 433 LFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 88885 56688999999999999999999999998876655444
No 113
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.08 E-value=1.2 Score=53.13 Aligned_cols=137 Identities=21% Similarity=0.289 Sum_probs=80.9
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH--HHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIA--KVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~--Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
-..|++++.+++...+..+.-.+...|.+++ +..+..+. -..+++.|.+++...+..+.+.| .+|-++..|--..
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 3568999999999888888888777777764 22233332 24678889999987777777777 5655543221110
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCC-CChhHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSD-SSHEIR 172 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li~yLp~fL~gLf~lLsD-~~~eVR 172 (666)
...--..++|.|...+. ++..|..++..++++....+ ..++.|= +.++-+.+++.. ++++|.
T Consensus 366 -~~mV~~GlIPkLv~LL~--d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~ 429 (708)
T PF05804_consen 366 -SQMVSLGLIPKLVELLK--DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEEVQ 429 (708)
T ss_pred -HHHHHCCCcHHHHHHhC--CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCcccc
Confidence 01111235677777775 45677778888887754332 2344433 244555444433 344443
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.47 Score=56.24 Aligned_cols=228 Identities=15% Similarity=0.191 Sum_probs=155.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccH
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L 112 (666)
....+..+.|+..-+|-||..-+..+++.-+..-+..-..+|+.....+.|.|+=|=-.| .++..++. ..-
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce--------vy~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE--------VYP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH--------hcc
Confidence 566778889999999999988777776632222333445789999999999998554333 44444544 134
Q ss_pred hhhHHHHHHhhcC-C--C-HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 113 EEFIPLLRERMNV-L--N-PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 113 ~~fIPlL~eri~~-~--n-p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
+.++|.+.|.-.. . + ++.|..+=+.|..+..--|.=...|...+.....+...||+.+-|-.++..++.+++....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 6778888884322 1 1 3444433355555555555556778888888778888999888999999999999987643
Q ss_pred CCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCcccccch----HhHHHHHhhhhc-CCcHHHHHHHHHHHH
Q 005975 189 SPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYY----ADILGAILPCIS-DKEEKIRVVARETNE 262 (666)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~-s~d~~irl~Al~WL~~~i~l~~~~l~pyl----p~lL~~LL~~Ls-d~~~eIR~~A~~~n~ 262 (666)
..+-.+.++..-++.-.+ +....+|+.|+.-+.+...--|.+++|++ -+....+++.+. +.++.+|-.|+.|.+
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 323345555555554443 44577999999999999998888999854 344456666555 445668888988887
Q ss_pred HHHHhhC
Q 005975 263 ELRAIKA 269 (666)
Q Consensus 263 ~L~~~i~ 269 (666)
++.....
T Consensus 961 ei~a~l~ 967 (982)
T KOG4653|consen 961 EIQAALE 967 (982)
T ss_pred HHHHHHH
Confidence 7665543
No 115
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=2.3 Score=53.54 Aligned_cols=345 Identities=15% Similarity=0.137 Sum_probs=185.6
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh---hhhHHHHHHHHHH---hhcCC-chhHHHHHHHHHHH
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---IIFFNQIFDALCK---LSADS-DANVQSAAHLLDRL 99 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i---l~~f~eIfd~L~k---l~~D~-d~~Vr~gA~~LdrL 99 (666)
.++...++.+.+ |..+|..||-+.+-.+.+|-+++..+. ..+..+||.-+.+ ++.|. .|.-.+-..+|.++
T Consensus 47 ~pl~~~l~~~~~--L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl 124 (1266)
T KOG1525|consen 47 LPLADHLIKDFL--LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETL 124 (1266)
T ss_pred HHHHHHHhhHHH--hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHH
Confidence 344444444432 367788899988888889988865422 2355555555543 44555 34555555555555
Q ss_pred HHHh-hcccccccHhhhHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHH
Q 005975 100 VKDI-VTESDQFSIEEFIPLLRERMNV----LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQ 174 (666)
Q Consensus 100 lKDI-v~e~~~f~L~~fIPlL~eri~~----~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~ 174 (666)
.+-. +-.-...+-+.+.+-+...|.+ ..|..--+.+..+..++..-+ .-=.++|+-+|.-+.-+.++.+..
T Consensus 125 ~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d----~v~~e~L~~ll~~lv~~~~~~~~~ 200 (1266)
T KOG1525|consen 125 AKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED----TVQSELLDVLLENLVKPGRDTIKE 200 (1266)
T ss_pred HHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhccCCCCccHH
Confidence 4421 1111111223344444444432 222211112222222221111 112345666665555566777777
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh----cCCc
Q 005975 175 ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI----SDKE 250 (666)
Q Consensus 175 A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~L----sd~~ 250 (666)
|+.+-..++..+...-..++.+++.--+..-.+.-.-++...-+-|.++ .-+.|++|-+++|.+ ..++
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L--------~~~~p~ll~~vip~l~~eL~se~ 272 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILEL--------WRIAPQLLLAVIPQLEFELLSEQ 272 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHhcch
Confidence 7766666666554332333333332222111111011111111222222 223455555555554 4457
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHH----------------
Q 005975 251 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV---------------- 314 (666)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i---------------- 314 (666)
.+.|..|.+..+.+...-...-. --++++...-..++.|.+.++|+++++-....+-..|...
T Consensus 273 ~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~ 351 (1266)
T KOG1525|consen 273 EEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDE 351 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCCh
Confidence 88999998887766533221101 1267888888889999899999998876654443333210
Q ss_pred -------------------hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc------------cchHHHHHHHHHh
Q 005975 315 -------------------LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------------LQHFRQLVVFLVH 363 (666)
Q Consensus 315 -------------------~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~------------~~~F~~fm~~LL~ 363 (666)
..+.+.++..+...+-|....||..|+.-|+++-.+ .+-|.-+-.+||+
T Consensus 352 ~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~ 431 (1266)
T KOG1525|consen 352 DVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLH 431 (1266)
T ss_pred hhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHh
Confidence 122333566666777899999999999888877632 2456667788888
Q ss_pred hccccchhhhhHHHHHHHHHhccCCh
Q 005975 364 NFRVDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 364 lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
.+..+. ++.| ..|.|-||..|-|
T Consensus 432 ~~y~~~--~~~r-~~vE~il~~~L~P 454 (1266)
T KOG1525|consen 432 LYYEND--LDDR-LLVERILAEYLVP 454 (1266)
T ss_pred hHhhcc--ccHH-HHHHHHHHHhhCC
Confidence 875543 5777 7788888887744
No 116
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.99 E-value=0.77 Score=59.58 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=152.4
Q ss_pred hhhhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc--
Q 005975 30 LQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT-- 105 (666)
Q Consensus 30 l~~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~-- 105 (666)
...++.|....+. ..+..||....+.+.+++....+.+-.-|.-||..+.-.+.|..+..-+-| +.+..++.|-..
T Consensus 1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 3457777766554 456789999999999998876677778899999999887777766655556 777777776433
Q ss_pred -ccccccHhhhHHHHHHhhcCC-CHHHHHHHHHHHHHh----hc--C------------------------------Cch
Q 005975 106 -ESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVL----DS--V------------------------------PDI 147 (666)
Q Consensus 106 -e~~~f~L~~fIPlL~eri~~~-np~vR~~alswL~~L----~s--v------------------------------p~~ 147 (666)
+...-....+|--|.+.-... ++.+-.-+++-+..+ .. + ...
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence 211122345555555554332 344444444444422 00 0 011
Q ss_pred hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHhcCCC--------------
Q 005975 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAASP-------------- 208 (666)
Q Consensus 148 ~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d-----~~~iI~iLl~~~~s~-------------- 208 (666)
+...+.=-+|.+|.++..|..+|||+.|.+.|-+.+..-+.....+ +..++-.|...++..
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~ 1419 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGV 1419 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 1122333355666677889999999999888888876554432221 244444443333210
Q ss_pred ----C-HH----HHHHHHHHHHHHHHhc---CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 005975 209 ----D-EF----TRLTAITWINEFVKLG---GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 276 (666)
Q Consensus 209 ----d-~~----irl~Al~WL~~~i~l~---~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d 276 (666)
+ .+ ...|+...+..++++. -+.+-+.+|+++..+..|+.-+++.+-.....|...|+...+..=..-+
T Consensus 1420 ~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~ 1499 (1780)
T PLN03076 1420 DGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEK 1499 (1780)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 0 01 1233333334444432 2345567888888888899988988888888888777654432111111
Q ss_pred hHhHHHHHHHhcC
Q 005975 277 VGPILSIATRQLS 289 (666)
Q Consensus 277 l~~il~~L~~~L~ 289 (666)
.+.++..+.+.+.
T Consensus 1500 W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1500 WLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555543
No 117
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=1.6 Score=51.79 Aligned_cols=253 Identities=17% Similarity=0.152 Sum_probs=155.4
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCC-cHHHHHHHHHHHHHHHHhhCCCCC
Q 005975 198 AEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDK-EEKIRVVARETNEELRAIKADPAD 273 (666)
Q Consensus 198 I~iLl~~~~s~-d~~irl~Al~WL~~~i~l~~~~l~py--lp~lL~~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~~~~ 273 (666)
++.|+..++.. ||-.|+.|+.=+.+++.++.++-+.- ...++|+|...+.++ +++|...|++|...|++.......
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34445555554 89999999998888888877654443 457889999999876 599999999999999998865322
Q ss_pred -CCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-
Q 005975 274 -GFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD- 350 (666)
Q Consensus 274 -~~dl~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~- 350 (666)
.+| ...++++.+.|. -+-.++-+.+|+.+-.+.+..|..++.-- -+-+.|..|.-=+-.+.+.|+-+-+.+|.+
T Consensus 249 ~vV~-~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG--~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVD-EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAG--ALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeec-ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 122 356777777764 45577889999999999998888776421 111222223223444666788888888842
Q ss_pred -cchHHHHHHHH---Hhhc-cccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHH---Hhcc
Q 005975 351 -LQHFRQLVVFL---VHNF-RVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNL---ILLT 422 (666)
Q Consensus 351 -~~~F~~fm~~L---L~lf-~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~---iLLT 422 (666)
.+.|+.||+.| ..+| ..|++.+|.+---.-|-.|.......-+..++ ....+...+|.|+. +|=+
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~-------s~dLi~~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLC-------SHDLITNIQQLLSVTPTILSN 398 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHh-------chhHHHHHHHHHhcCcccccc
Confidence 44555555544 3455 45688888775445555566665544444444 24455566666653 2222
Q ss_pred chhHHHHHHHHHhccCCc------chHHHHHHHHHhhccChHHH
Q 005975 423 SSELSELRDLLKKSLVNP------AGKDLFVSLYASWCHSPMAI 460 (666)
Q Consensus 423 s~El~~lR~~L~~~l~~~------~~~~lF~~L~~~w~~n~vs~ 460 (666)
.......|....-+=..+ ...++-.+|-+..||+.+|+
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~ 442 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSA 442 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCc
Confidence 223333343333110000 11245556666777776653
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.98 E-value=0.089 Score=64.11 Aligned_cols=174 Identities=20% Similarity=0.223 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHH--Hhh--cccccccHhhhHHHHHHhh
Q 005975 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAAHLLDRLVK--DIV--TESDQFSIEEFIPLLRERM 123 (666)
Q Consensus 49 R~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA~~LdrLlK--DIv--~e~~~f~L~~fIPlL~eri 123 (666)
|..|--.|..+++...+......+.+++.|++-++ +.+.+ . +.++++-- .+. ..+.-.++-...|.+..+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~--d--~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN--D--EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFV 825 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC--c--chhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 66666677777888777776666666666665442 22222 0 11111100 000 0111112456678888888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005975 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ 203 (666)
Q Consensus 124 ~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~ 203 (666)
++..+.+|+.+..+|..+.+....+. +..+..++..++.|.+.-+|++...++-..+
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~---m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l-------------------- 882 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRET---MATVINGFLPLLGDLDKFVRRQGADELIELL-------------------- 882 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccchhhHhhhhhHHHHHHHH--------------------
Confidence 88899999999888887776554443 2333445555777877777776544333322
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 204 RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 204 ~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
+......+.||.|-+++.++++|+|..+.+|.+|.++...+...+.
T Consensus 883 --------------------~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 883 --------------------DAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred --------------------HHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 3444567899999999999999999999999999999887766554
No 119
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.93 E-value=0.51 Score=53.83 Aligned_cols=211 Identities=16% Similarity=0.157 Sum_probs=127.5
Q ss_pred hhhhHHHHHhhcCCC---CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcc
Q 005975 30 LQQIVPPVLNSFSDQ---DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (666)
Q Consensus 30 l~~Il~pVL~~~~D~---d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e 106 (666)
...++..||+|=..+ |.-+|..+.=.-|..-+ ..++......+|..+.++...+|..||.-.-.+=+++-|.|.|
T Consensus 47 flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~--dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 47 FLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPD--DPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCC--ChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 445667777776644 33444433211111111 1233556678889999999999999999884444556678887
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
.+..--+.++..|.+|+++..|.||.-|+-++.-+....+.+=-..-. +|.. -+=.||+.+||++|- -.|
T Consensus 125 IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n-~l~~--~vqnDPS~EVRr~al-------lni 194 (885)
T COG5218 125 IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVN-LLKD--IVQNDPSDEVRRLAL-------LNI 194 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHH-HHHH--HHhcCcHHHHHHHHH-------HHe
Confidence 666667889999999999999999999999999887655433211111 2221 223899999999872 222
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
... .+-.|++++++.+.+-..|.-.-. +.+-.++.-....-=|+++ .+-..+.|-+..+|.++.++
T Consensus 195 ~vd-----nsT~p~IlERarDv~~anRr~vY~--r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~ 260 (885)
T COG5218 195 SVD-----NSTYPCILERARDVSGANRRMVYE--RCLPRIGDLKSLSIDKRIL-LMEWGLLDREFSVKGALVDA 260 (885)
T ss_pred eeC-----CCcchhHHHHhhhhhHHHHHHHHH--HHhhhhcchhhccccceeh-hhhhcchhhhhhHHHHHHHH
Confidence 221 233577788888777666653211 1122222222222223333 33346666677777776654
No 120
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.91 E-value=0.072 Score=56.92 Aligned_cols=229 Identities=17% Similarity=0.157 Sum_probs=141.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHhhcCC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSH---EIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD~~~---eVR~~A~~~L~~fL~eI~~~~ 190 (666)
+|++.+.+++.+..||.-++-.+.++..=.. .+-+|. -..|+++++++..+.. -+|+++ =.|..+++ ++.|
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~T-WtLSNlcR--GknP 234 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT-WTLSNLCR--GKNP 234 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhH-HHHHHhhC--CCCC
Confidence 5777778889999999999988887653221 122222 2345666666655443 467766 44777775 3456
Q ss_pred CCCH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHH
Q 005975 191 SVDY---GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRA 266 (666)
Q Consensus 191 ~~d~---~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py-lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (666)
..|+ ...+|+|-+-+.+.|+++-.-|+-.|+-+.+.+.+..-.- =.++.+-++..|++++..|..-|-+..+....
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 6665 5678999999999999998888777765555433221111 11233446666666654443323222211110
Q ss_pred hhCCCCC-CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 267 IKADPAD-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 267 ~i~~~~~-~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
--..... -++ ...++.+...|.++.+..|-.|-=-+..+--+..+.+...++ .++|.|++.|+-.+=.+.+.+||.+
T Consensus 315 G~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 315 GSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred cCccceehhee-cccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 011 345667777788877766655543355666666666666655 5899999999988888999999999
Q ss_pred HHHhh
Q 005975 345 ACIAK 349 (666)
Q Consensus 345 a~Is~ 349 (666)
+...+
T Consensus 394 sNats 398 (526)
T COG5064 394 SNATS 398 (526)
T ss_pred Hhhhc
Confidence 88875
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.53 Score=55.82 Aligned_cols=217 Identities=15% Similarity=0.092 Sum_probs=144.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005975 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ 203 (666)
Q Consensus 124 ~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~ 203 (666)
+++-+-+|-+++.-+..+..--...=......+++....++.|.++=|--.|.+.+..+++. .=++|+|-+.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 45555666666665555544333333445566777788899998887777776766666653 22456666655
Q ss_pred hc----CCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHh
Q 005975 204 RA----ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGP 279 (666)
Q Consensus 204 ~~----~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~ 279 (666)
.- .....+.|+..=+.|..+++.-|+-+..|...++...++..-+++.+-|..+....+.++....-.... ++.+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~e 888 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHE 888 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHH
Confidence 32 222244555555777777888888899999999999999999888888988888888887665421111 3555
Q ss_pred HHH-HHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH----HHHHHHHhcCCCCHH-HHHHHHHHHHHHh
Q 005975 280 ILS-IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND----IFDTLLKALSDPSDE-VVLLVLEVHACIA 348 (666)
Q Consensus 280 il~-~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~----l~p~LL~~LsD~s~e-Vv~~~l~lLa~Is 348 (666)
++. ++...-.|....+|-||.+-+..+..+.+.++.|.+.. ....++....+..++ ++..++..+.+|-
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 554 34444457789999999999999999999999996543 334444444444444 4556666555543
No 122
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=3 Score=56.35 Aligned_cols=260 Identities=18% Similarity=0.160 Sum_probs=156.6
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCchhhhhchHHHHHHHHHhcCCCChhHHH----HHHHHHHHHHHHhh
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ----QADSALWEFLQEIK 187 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L-~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~----~A~~~L~~fL~eI~ 187 (666)
..+++.+....|++.++.|..-+--|..+ .++|...+..+.-+++.+++-.+.|...++.. .|..++..+++.+.
T Consensus 1032 ~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~ 1111 (3550)
T KOG0889|consen 1032 EYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIF 1111 (3550)
T ss_pred HHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHH
Confidence 55666666666777777776655444433 45666667889999999999999998887776 56666666666554
Q ss_pred cCCC------CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH-hhhhcCCcHH-HHHHHHH
Q 005975 188 NSPS------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI-LPCISDKEEK-IRVVARE 259 (666)
Q Consensus 188 ~~~~------~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~L-L~~Lsd~~~e-IR~~A~~ 259 (666)
+... .-+..++..++..+-++++.+|.++.+-+..+.+..+......+...=..+ .|-...+.+. -+.....
T Consensus 1112 ~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig 1191 (3550)
T KOG0889|consen 1112 IDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIG 1191 (3550)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhh
Confidence 4111 124678889999999999999999999999888876544322222222222 1111111100 0111111
Q ss_pred HHHHHHHhhCCCCCCCChHhHHHH------------------HHHhc----CCCcHHHHHHHHHHHHHHHhhChH---HH
Q 005975 260 TNEELRAIKADPADGFDVGPILSI------------------ATRQL----SSEWEATRIEALHWISTLLNRHRT---EV 314 (666)
Q Consensus 260 ~n~~L~~~i~~~~~~~dl~~il~~------------------L~~~L----~~~~~~tR~aaL~WL~~L~~~~p~---~i 314 (666)
..+...-.+...+..+|+...+-. +.+.. .......|.+|++.+.......+- ..
T Consensus 1192 ~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~ 1271 (3550)
T KOG0889|consen 1192 HLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQH 1271 (3550)
T ss_pred hHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhh
Confidence 111111111111122222111110 11111 122344599999988877666543 45
Q ss_pred hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHhhccccchhh
Q 005975 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-----QHFRQLVVFLVHNFRVDNSLL 372 (666)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~-----~~F~~fm~~LL~lf~~d~~lL 372 (666)
.++-++++-.+.++|.-+++|++..+...+.++-..+ +.....|..|+..+.+.+++.
T Consensus 1272 ~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~ls 1334 (3550)
T KOG0889|consen 1272 AELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNNLS 1334 (3550)
T ss_pred hhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhhhh
Confidence 5677889999999999999999999988888877543 344557777777776665543
No 123
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=0.28 Score=59.76 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhh
Q 005975 194 YGRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 194 ~~~iI~iLl~~~~s----~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i 268 (666)
++++.|++++-|.. +||++|..|--.+..|+-++. .|...=+|.++..|. .+.|-||..+.-+.+.|.=..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 46788999998854 479999999888888877654 456667778888888 678888866555544432110
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-
Q 005975 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI- 347 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~I- 347 (666)
++ =+++.-+.|-.++.|++..+|..|+.-+.+|.-+-.=++..++ +.+-.+|.|+.++|+..|-....++
T Consensus 993 ---pn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql----~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 ---PN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQL----SEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ---cc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccH----HHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 00 0356667888999999999999999999999988776666554 4456788999999999888444444
Q ss_pred -----------------hh---ccchHHHHHHHHHhhccccchh
Q 005975 348 -----------------AK---DLQHFRQLVVFLVHNFRVDNSL 371 (666)
Q Consensus 348 -----------------s~---~~~~F~~fm~~LL~lf~~d~~l 371 (666)
|. .++-|+.+|+-|+.+.++|.+.
T Consensus 1064 ~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkderf 1107 (1251)
T KOG0414|consen 1064 SKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDERF 1107 (1251)
T ss_pred hcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhcccccc
Confidence 42 2466788888888888877543
No 124
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.73 E-value=0.13 Score=51.00 Aligned_cols=139 Identities=21% Similarity=0.259 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHh-cchhhhhHHHHHHHH-----------H-HhhcCCchhHHHHH-HHHHHHHHHhh------cc
Q 005975 47 RVRYYACEALYNIAKVV-RGDFIIFFNQIFDAL-----------C-KLSADSDANVQSAA-HLLDRLVKDIV------TE 106 (666)
Q Consensus 47 rVR~~A~eaL~nI~Kv~-r~~il~~f~eIfd~L-----------~-kl~~D~d~~Vr~gA-~~LdrLlKDIv------~e 106 (666)
+||..|...+..++|.. +..+..||..+||.- + -+..|+++.||.+| ..+..++...- .+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 58999999999999984 456679999999865 2 35689999999999 77777666321 11
Q ss_pred cc---------cccHhhhHHHHHHhh-----cCCCHHHHHHHHHHHHHhhcCCchh-h-hhchHHHHHHHHHhcCCCChh
Q 005975 107 SD---------QFSIEEFIPLLRERM-----NVLNPYVRQFLVGWITVLDSVPDID-M-LGFLPDFLDGLFNMLSDSSHE 170 (666)
Q Consensus 107 ~~---------~f~L~~fIPlL~eri-----~~~np~vR~~alswL~~L~svp~~~-L-i~yLp~fL~gLf~lLsD~~~e 170 (666)
.. ...+...|--+.+.+ ...++.+-.-++.++..+....+-+ + -.++++++..+...+.+.+++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 122444444444443 2457778888899999887755432 2 358999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005975 171 IRQQADSALWEFLQE 185 (666)
Q Consensus 171 VR~~A~~~L~~fL~e 185 (666)
||.++-.|++.++..
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988753
No 125
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=2.5 Score=49.93 Aligned_cols=179 Identities=14% Similarity=0.174 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH---------
Q 005975 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR--------- 265 (666)
Q Consensus 195 ~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~--------- 265 (666)
..+.+.+-.++.++.+-+-.+|...+..+-...+..+.| -+..+-++++.+..-.|..|.++...+.
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 455666666667777777777666665555555555555 6667777777777777777766543332
Q ss_pred ------HhhCCC--------------------------------------------------------------------
Q 005975 266 ------AIKADP-------------------------------------------------------------------- 271 (666)
Q Consensus 266 ------~~i~~~-------------------------------------------------------------------- 271 (666)
.++.+.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 111110
Q ss_pred ---CCCCCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc------------------
Q 005975 272 ---ADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL------------------ 329 (666)
Q Consensus 272 ---~~~~dl-~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L------------------ 329 (666)
..+++| ..+++++..... ++.+.|+.+|.-|+++.+-|. +.++-..+|+.|
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie-~~pdsKe~~L~~LCefIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~iy 472 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIE-ENPDSKERGLEHLCEFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRFIY 472 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHHHh
Confidence 001121 233333333332 244567777777777766652 122223333333
Q ss_pred ---CCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcccc-chhhhhHHHHHHHHHh
Q 005975 330 ---SDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLC 384 (666)
Q Consensus 330 ---sD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d-~~lLe~Rg~~IIR~Lc 384 (666)
-=++..||..+...|++|+.+.....+=+..+++++-.| .....+|+.+-.+.+-
T Consensus 473 NRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 234566788888999999987888888888888888655 4556778777666554
No 126
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.64 E-value=2.3 Score=46.89 Aligned_cols=210 Identities=17% Similarity=0.202 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHHhhcCCC----C----CHHHH
Q 005975 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIKNSPS----V----DYGRM 197 (666)
Q Consensus 128 p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR--~~A~~~L~~fL~eI~~~~~----~----d~~~i 197 (666)
+.++..+|+.++....-.+.++-+|+|.|+.+.+++|.....+.| ..+..+|. |+..+...+. + .++.|
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~-FL~~v~~~~~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQ-FLSSVAESPHHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHH-HHHHHHTSHHHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-HHHHHHcchhHHHHhCCHHHHHHH
Confidence 478889999999988888889999999999999999966443322 34445554 4554433221 1 23444
Q ss_pred HHH-HHHhcCCC----------------------CHH-HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CC--c
Q 005975 198 AEI-LVQRAASP----------------------DEF-TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DK--E 250 (666)
Q Consensus 198 I~i-Ll~~~~s~----------------------d~~-irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls-d~--~ 250 (666)
++- ++..+.-. |.. -|..|+.-+..+++-.+..+.+-+...+..++..-+ ++ +
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 442 22222211 112 245577788877776555555555555555554222 22 2
Q ss_pred HHHHHHHHHHHHHHHHhhC-------CCCCCCChHhHH-----HHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh
Q 005975 251 EKIRVVARETNEELRAIKA-------DPADGFDVGPIL-----SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (666)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~-------~~~~~~dl~~il-----~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l 318 (666)
..-++.|-.....+..-.. +....+|+.+.. +-|. .-.+..+-.|..|++.+..+....|.+ .+
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~---~l 344 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE---QL 344 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH---HH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH---HH
Confidence 3334444443333321111 112234543333 3444 222455778999999999999998864 66
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Q 005975 319 NDIFDTLLKALSDPSDEVVLLVLE 342 (666)
Q Consensus 319 ~~l~p~LL~~LsD~s~eVv~~~l~ 342 (666)
.+++|.++..|.+++.-|..-|..
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhh
Confidence 789999999999988877765543
No 127
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.62 E-value=0.17 Score=50.07 Aligned_cols=77 Identities=23% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
.+.+||+..+++..+.+.....+-|.-|.+-+..+.+. .++++.|.++++++.|-+.|+-.+++|+..++.+|.++.
T Consensus 31 ~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 31 PEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred hhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999887888899999999988888 999999999999999999999999999999999999984
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.61 E-value=0.082 Score=64.40 Aligned_cols=153 Identities=17% Similarity=0.267 Sum_probs=93.9
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccccc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQ 109 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~ 109 (666)
+-...|.++.|....+..+||.|..++....|.+..+...+ +++.+.-+..|.+..++.++
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~---v~~~~~~ll~~~~~~~~r~~---------------- 874 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMAT---VINGFLPLLGDLDKFVRRQG---------------- 874 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhccchhhHhhhhh----------------
Confidence 44455666666666666666666666666665544443322 23333333444444343333
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
+..-+..++.+-...+.+|.|-+.+.|+++++|....||.+|.+++..++..++-.
T Consensus 875 ------------------------a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 875 ------------------------ADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred ------------------------HHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccc
Confidence 33334445555556688999999999999999999999999999998888777553
Q ss_pred CCC----C-----------HHHHHHHHHHhcCCCCH-----------HHHHHHHHHHHHHHH
Q 005975 190 PSV----D-----------YGRMAEILVQRAASPDE-----------FTRLTAITWINEFVK 225 (666)
Q Consensus 190 ~~~----d-----------~~~iI~iLl~~~~s~d~-----------~irl~Al~WL~~~i~ 225 (666)
..+ + ..++++.|++.-.-++. ..|+.-+.|+.-+-+
T Consensus 931 ~g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnk 992 (1549)
T KOG0392|consen 931 AGIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNK 992 (1549)
T ss_pred cCCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHH
Confidence 321 1 23456666554433332 346778899974433
No 129
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.58 E-value=1.5 Score=46.18 Aligned_cols=202 Identities=20% Similarity=0.196 Sum_probs=130.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhh
Q 005975 38 LNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEF 115 (666)
Q Consensus 38 L~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il--~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~f 115 (666)
=.+++|.|..+|.-|.+.|.++.+....+.+ ...+-+++-.+.-+.|. ..+..+..++.++++--. .+.-....+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~l~gl~~L~~~~~--~~~~~~~~i 81 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPALKGLLALVKMKN--FSPESAVKI 81 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHHHHHHHHHHhCcC--CChhhHHHH
Confidence 3578899999999999999998776554322 33456666667666554 345555566777664111 111123344
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCC--
Q 005975 116 IPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP-- 190 (666)
Q Consensus 116 IPlL~eri~~--~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~-- 190 (666)
+-.+.+.... .-..+|+.+...+..+..-....+...=++|+.|+.+.+.. .+|..--.+.+.+..+++.+....
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 4444443332 33578999999999887777667766778999999987643 566555556666666665554321
Q ss_pred ----------------------------------------CCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-
Q 005975 191 ----------------------------------------SVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGG- 228 (666)
Q Consensus 191 ----------------------------------------~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~- 228 (666)
...+ +..+|.|++.+.++...+|..++.-+...+...|
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 0112 4567888888888888888888888877776644
Q ss_pred cccccchHhHHHHH
Q 005975 229 DQLVPYYADILGAI 242 (666)
Q Consensus 229 ~~l~pylp~lL~~L 242 (666)
..+.||+..+-.++
T Consensus 242 ~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 242 DSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777776655
No 130
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.57 E-value=1.2 Score=47.28 Aligned_cols=168 Identities=17% Similarity=0.288 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC
Q 005975 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD 209 (666)
Q Consensus 130 vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d 209 (666)
.+-..+.|+-. ..+....+-.++|-++++++.++.|..+++|...+.+|..|++.+...
T Consensus 95 ~~~~~l~w~v~-~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~-------------------- 153 (282)
T PF10521_consen 95 LASHVLSWIVL-SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA-------------------- 153 (282)
T ss_pred ccHHHHHHHHH-hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh--------------------
Confidence 34456777754 355666778999999999999999999999999999999999866331
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc--------CCcHHHHHHHHHHHHHHHHhhCCCCCC---CChH
Q 005975 210 EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--------DKEEKIRVVARETNEELRAIKADPADG---FDVG 278 (666)
Q Consensus 210 ~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls--------d~~~eIR~~A~~~n~~L~~~i~~~~~~---~dl~ 278 (666)
. |.. +.-.| ..+-+-+++.+|+. ++...+=..|-.|...|.+...+.+.. ..++
T Consensus 154 -~-------~~~--L~~tG-----l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~ 218 (282)
T PF10521_consen 154 -E-------WDI--LRRTG-----LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLD 218 (282)
T ss_pred -h-------hHH--HHHcC-----hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHH
Confidence 0 211 00001 12334445555555 233445556666666665554322221 2244
Q ss_pred hHHH-HHHHhcCC----CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 005975 279 PILS-IATRQLSS----EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (666)
Q Consensus 279 ~il~-~L~~~L~~----~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (666)
.++. .+...+.. +....+...++-+..+.+..+-....|+..++|.+...+.++.
T Consensus 219 ~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 219 KILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 4443 23333332 2477788888999999999999999999999999999888764
No 131
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=9.8 Score=51.88 Aligned_cols=434 Identities=15% Similarity=0.148 Sum_probs=233.8
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHhhcCCchhHHHHHHHH-HHHHHHhhcc
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDANVQSAAHLL-DRLVKDIVTE 106 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r-~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~L-drLlKDIv~e 106 (666)
-.+++.+....+-.|+.+..|+..|.++.-+.+... ...+.+--++++++.-.+.|....+.+|+..+ ...++++..-
T Consensus 1030 i~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~ 1109 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRV 1109 (3550)
T ss_pred hHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHH
Confidence 456788888899999999999999888776654433 34455666888888888889998888887332 2233333321
Q ss_pred ----------cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC--ChhHHHH
Q 005975 107 ----------SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQ 174 (666)
Q Consensus 107 ----------~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~--~~eVR~~ 174 (666)
........+-|...+.+ ++|+.||.++...+.++....+.+. ++++..+++.+.-| .+..|..
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~lv~eL~-npN~~VR~~~~~~L~~i~~~s~~~v----~~L~~p~K~~ll~p~f~k~lr~~ 1184 (3550)
T KOG0889|consen 1110 IFIDELAEEERAKSAMNVFSPLVLELF-NPNSDVREFSQKLLRLISELSGKSV----VKLLEPFKDVLLSPIFKKPLRAL 1184 (3550)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHhccccccccccC
Confidence 11333455556655554 5888999999999999887765543 33344443333111 1233322
Q ss_pred ----HHHHHHHHHHHhhcCCC-CCHHHHHHHH---HHhcCC---------------CCH----HHHHHHHHHHHHHHHhc
Q 005975 175 ----ADSALWEFLQEIKNSPS-VDYGRMAEIL---VQRAAS---------------PDE----FTRLTAITWINEFVKLG 227 (666)
Q Consensus 175 ----A~~~L~~fL~eI~~~~~-~d~~~iI~iL---l~~~~s---------------~d~----~irl~Al~WL~~~i~l~ 227 (666)
....++.+.--+-..|. .|+...+-.+ ...+.+ ++. ..|..|++-+...+...
T Consensus 1185 p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~ 1264 (3550)
T KOG0889|consen 1185 PFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLS 1264 (3550)
T ss_pred CHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcc
Confidence 12222222222212221 2322111111 111111 111 23566666665555443
Q ss_pred C---cccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC---hHhHHHHHHHhcCCCcHHHHHHHHH
Q 005975 228 G---DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSEWEATRIEALH 301 (666)
Q Consensus 228 ~---~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L~~~~~~tR~aaL~ 301 (666)
+ ....+|.++++..+++.|--..+|+-..|..+....... ...+. +...+..+...+.|-. ..=++.+.
T Consensus 1265 d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~----~~~~~ke~lq~~lrplL~~l~d~~-~lsv~~l~ 1339 (3550)
T KOG0889|consen 1265 DFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQ----DVKLPKELLQSHLRPLLMNLSDHN-NLSVPGLE 1339 (3550)
T ss_pred cccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc----cccccHHHHHhhHHHHHHhhhHhh-hhhHHHHH
Confidence 3 356889999999999999999999998887765433211 01111 2344444444444322 24567778
Q ss_pred HHHHHHhhChHHHh-hhhHHHHHHHHHhcCCCCHH-------------HHHHHHHHHHHHhhccchHHHHHHHHHhhccc
Q 005975 302 WISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSDE-------------VVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 302 WL~~L~~~~p~~i~-~~l~~l~p~LL~~LsD~s~e-------------Vv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~ 367 (666)
|+..+.+..++-+. ....+++..+-+.++|..-+ ++....++.-.++. -=++|+..|+.....
T Consensus 1340 ~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~---~~~~~~~~Ll~~v~~ 1416 (3550)
T KOG0889|consen 1340 GLSRLLRLLINYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPP---AADKFLDELLLCVVL 1416 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccH---HHHHHHHHHHHHHHH
Confidence 88877766544332 22223333333333221111 11111111111111 012344444443322
Q ss_pred c-chhhhhHH----HHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcch
Q 005975 368 D-NSLLEKRG----ALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAG 442 (666)
Q Consensus 368 d-~~lLe~Rg----~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~ 442 (666)
- +.+..+-+ .-+++-+ ...+.+.+...++. -.+..|.++++-.+ -.+...++|..+.+. -
T Consensus 1417 ~e~~L~~~~~sp~r~pl~kfl-~r~~~~tv~~f~~~----~~~~~~~~~f~~~~-----~~~~~~~l~e~~~~~-----~ 1481 (3550)
T KOG0889|consen 1417 LEEVLRKEENSPFREPLLKFL-NRFANPTVDYFLAQ----LDEPDLYRMFVYAL-----RIDDLLPLREVLAKE-----W 1481 (3550)
T ss_pred HHHHHHHhcCChhhhHHHHHH-HHccCchHHHHHHH----cchHHHHHHHHHHH-----cccchhHHHHHHhhh-----H
Confidence 2 22211111 1122222 23344556655555 36778888887666 457888888888751 1
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHH
Q 005975 443 KDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFL 490 (666)
Q Consensus 443 ~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~e~~~~~l 490 (666)
.....-+..+-.++++...+.|+-.|+-..++.+++.+++-.++..+.
T Consensus 1482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~vk~~~e~~~s~~~i 1529 (3550)
T KOG0889|consen 1482 LEFYTLLDPEISSYTVPNMASDIQFQMVPLISTMVKNDDEWLLSSQFI 1529 (3550)
T ss_pred HHHHHhccCccCccccchhhcchhhhhhHHHHHHHhccHHHhhccchH
Confidence 122333344556666677889999999999998877777766665443
No 132
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1.1 Score=47.96 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=123.4
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-----ccc
Q 005975 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-----LVP 233 (666)
Q Consensus 160 Lf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d-~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~-----l~p 233 (666)
+|.+.+.++++-...+.+||.++.+.. ...+ .+++++.|-.-+..+|..++..++.-+..+++-+... +.-
T Consensus 48 ifgfeNenhrekttlcVscLERLfkak---egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillv 124 (524)
T KOG4413|consen 48 IFGFENENHREKTTLCVSCLERLFKAK---EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLV 124 (524)
T ss_pred CcccccccccchhhhHHHHHHHHHhhc---cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHH
Confidence 466778888888888999999998754 2344 3778888888889999999999999888888766522 122
Q ss_pred chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC-----CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005975 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~-----~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~ 308 (666)
--.++++.++.|+..++.++.++|.+....+...-.. +++..|--...+ |. ..-+...|..++..++.+..
T Consensus 125 vNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrn-la---akcndiaRvRVleLIieifS 200 (524)
T KOG4413|consen 125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRN-LA---AKCNDIARVRVLELIIEIFS 200 (524)
T ss_pred hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhH-HH---hhhhhHHHHHHHHHHHHHHh
Confidence 2467899999999999999999998877655322100 011111001111 11 11234679999999999999
Q ss_pred hChHHHhh-hhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 005975 309 RHRTEVLH-FLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA 348 (666)
Q Consensus 309 ~~p~~i~~-~l~~l~p~LL~~LsD~-s~eVv~~~l~lLa~Is 348 (666)
..|+.... --.+++..|..-|.-. +..|+..++++.-.+.
T Consensus 201 iSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 201 ISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 99877653 2346788888888874 4456666666544433
No 133
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.23 E-value=4.7 Score=42.40 Aligned_cols=240 Identities=10% Similarity=0.150 Sum_probs=147.0
Q ss_pred HHHhhcCCchhHHHHH-HHHHHHHHHhhcc-cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH
Q 005975 78 LCKLSADSDANVQSAA-HLLDRLVKDIVTE-SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD 155 (666)
Q Consensus 78 L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e-~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~ 155 (666)
|-..+.|.|..+|.-| .+|...++.+-.+ .+...+..++..+..|+. |+..-..++..+..+.+..... ......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~-~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFS-PESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCC-hhhHHH
Confidence 4456788999999888 8888888877654 344557888899999994 4444433455555555443311 122677
Q ss_pred HHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCccc
Q 005975 156 FLDGLFNMLSDS--SHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 156 fL~gLf~lLsD~--~~eVR~~A~~~L~~fL~eI~~~~~~d~-~~iI~iLl~~~~-s~d~~irl~Al~WL~~~i~l~~~~l 231 (666)
++..+|+-...+ ...+|..+-+.+..+++.-...- ..+ +.++.-+++.+. ..||..=+.+...+..++...+ +
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~ 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c
Confidence 778887655443 35788888888888876543211 112 456776676664 4688877777777776666544 2
Q ss_pred ccchHhHHHHHhhhh--cC---CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005975 232 VPYYADILGAILPCI--SD---KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (666)
Q Consensus 232 ~pylp~lL~~LL~~L--sd---~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L 306 (666)
-++..++-.++..-- .. +++...-.+.+.-..|.+.+.. ...--+-.++.|.+.|.++...+|..+|+-|.+-
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s--~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c 235 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS--TPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKAC 235 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC--cHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 333333333322111 00 1111111122222233333321 1111257889999999999999999999999999
Q ss_pred HhhChHH-HhhhhHHHHHHH
Q 005975 307 LNRHRTE-VLHFLNDIFDTL 325 (666)
Q Consensus 307 ~~~~p~~-i~~~l~~l~p~L 325 (666)
.+.++.+ +.+|...+...|
T Consensus 236 ~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 236 IENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHCCHHHHHHHHHHHHHHH
Confidence 9888654 888888887766
No 134
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.17 E-value=4.5 Score=43.08 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=91.0
Q ss_pred chHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005975 152 FLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (666)
Q Consensus 152 yLp~fL~gLf-~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~ 230 (666)
.+..+++.|. ..+.-++++||..+-+||+-+.- +.. ---.+.++.+...++..++.+|.+|+..+..++...|..
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 3447777765 56667788999999999999873 211 012455667777776678999999999998888887765
Q ss_pred cccchH---------hHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC-hHhHHHHHHHhcCC
Q 005975 231 LVPYYA---------DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSS 290 (666)
Q Consensus 231 l~pylp---------~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d-l~~il~~L~~~L~~ 290 (666)
...-.+ .++..+...+.+.+++++.+|.+....|+-.- .+. ...++..|.-...+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~-----~i~~~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG-----RISDPPKVLSRLLLLYFN 163 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHcC
Confidence 554444 58888888998889999999988776654221 122 25666655554443
No 135
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.11 E-value=8.9 Score=44.68 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHH
Q 005975 249 KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLK 327 (666)
Q Consensus 249 ~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~ 327 (666)
.+.+.+.+|..+...+-+.+..-..+++-..++.-|.+.+.++...+..+++..+..+.-.+.+-=..|+ .+.+..+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3556777777777766666543333455556666666666788888888999999888877643222222 246778889
Q ss_pred hcCCCCHHHHHHHHHHHHHHh
Q 005975 328 ALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 328 ~LsD~s~eVv~~~l~lLa~Is 348 (666)
.++|..+-++.+++|+|...+
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 999999999999999999988
No 136
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=13 Score=46.03 Aligned_cols=410 Identities=17% Similarity=0.129 Sum_probs=205.7
Q ss_pred HHh-hhhhHHHHHhhcCCCCHHHHHHH-----HHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch-hHHHHH-HHHHH
Q 005975 27 ETI-LQQIVPPVLNSFSDQDSRVRYYA-----CEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA-NVQSAA-HLLDR 98 (666)
Q Consensus 27 ~~y-l~~Il~pVL~~~~D~d~rVR~~A-----~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~-~Vr~gA-~~Ldr 98 (666)
.+| ...|...|++..+++++.-+-.| +.=|.+.+..+++-++.+...+.+ ++ |.+. ..|++- +++..
T Consensus 264 sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~----ll-d~es~~lRnavlei~~n 338 (1251)
T KOG0414|consen 264 SKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVD----LL-DSESYTLRNAVLEICAN 338 (1251)
T ss_pred HhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHH----hc-CCchHHHHHHHHHHHHH
Confidence 445 45566666666666655543322 222333333233333333322222 22 4444 667766 56666
Q ss_pred HHHHhhcc----cccccHhh-hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHH
Q 005975 99 LVKDIVTE----SDQFSIEE-FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 99 LlKDIv~e----~~~f~L~~-fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
++.+-.++ ....++.. |+..|.||+.+.+++||.-+++-..-+..-+.. -.....+++.+.++-+.|.+.-||+
T Consensus 339 ~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-p~~~~~eV~~la~grl~DkSslVRk 417 (1251)
T KOG0414|consen 339 LVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-PLGSRTEVLELAIGRLEDKSSLVRK 417 (1251)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC-CccHHHHHHHHHhcccccccHHHHH
Confidence 55544432 12334444 999999999999999999888655544332222 2457889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC---CH----HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHh-------------
Q 005975 174 QADSALWEFLQEIKNSPSV---DY----GRMAEILVQRAASPD-------EFTRLTAITWINEFVKL------------- 226 (666)
Q Consensus 174 ~A~~~L~~fL~eI~~~~~~---d~----~~iI~iLl~~~~s~d-------~~irl~Al~WL~~~i~l------------- 226 (666)
.|.+.+..|+...+-.+.. ++ ++-+..+-+...+.. +..+.....|+-+-...
T Consensus 418 ~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~ 497 (1251)
T KOG0414|consen 418 NAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSD 497 (1251)
T ss_pred HHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhcccccccc
Confidence 9999999999866433211 22 222222221111110 11222222233111110
Q ss_pred ---------------------------------cCcccccchHhHHHHHhhhhcCCc-HHHHHHHHHHHHHHHHhhCCCC
Q 005975 227 ---------------------------------GGDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 227 ---------------------------------~~~~l~pylp~lL~~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
..-.|..-+...+|.+..+|.... .||.+. ..-+. .+. .
T Consensus 498 ~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~----Idfl~-~c~--~ 570 (1251)
T KOG0414|consen 498 NKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEA----IDFLV-RCK--Q 570 (1251)
T ss_pred ccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH----HHHHH-HHH--H
Confidence 011112223344444444444322 222211 10011 110 0
Q ss_pred CCCCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHH-HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005975 273 DGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (666)
Q Consensus 273 ~~~dl-~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~-i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~ 350 (666)
.+++- +.-+.-+....-+.+...|++.......++-..+.. =..--..+...|.+.+.|.+-.=...-=++|...+.
T Consensus 571 F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~- 649 (1251)
T KOG0414|consen 571 FGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVA- 649 (1251)
T ss_pred hCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHh-
Confidence 11110 111111222222334447777777777766554322 111114566667777777653322222245555554
Q ss_pred cchHHH-HHHHHHhhcccc---chhhhhHHHHHHHHHhccCChHHHHHHHHHhhccc-CChHHHHHHHHHH-HHHhccch
Q 005975 351 LQHFRQ-LVVFLVHNFRVD---NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE-ADLDFACTMVQAL-NLILLTSS 424 (666)
Q Consensus 351 ~~~F~~-fm~~LL~lf~~d---~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~-~dl~F~~~mVq~L-n~iLLTs~ 424 (666)
..|+++ |+..|-.+|.-+ -..=+.||++||+-+-..-.++-+-..+..++... .+.+-+..+.+.. |.+.-+-.
T Consensus 650 ~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg~p~l~~~~L~~~s~i~~~r~~ 729 (1251)
T KOG0414|consen 650 RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLGEPRLAVDVLARYSNIVDPRKL 729 (1251)
T ss_pred CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccCcHHHHHHHHHHHHHhhccccc
Confidence 566665 666776677211 22225589999999888888888877777765442 2333332333322 22233334
Q ss_pred hHHHHHHHHHhccCCcchHHHHHHHHHhhc
Q 005975 425 ELSELRDLLKKSLVNPAGKDLFVSLYASWC 454 (666)
Q Consensus 425 El~~lR~~L~~~l~~~~~~~lF~~L~~~w~ 454 (666)
|...=|.+.+. +.+..+|..|++-.-
T Consensus 730 ~~~~~r~~f~~----~~~~~L~k~L~~l~~ 755 (1251)
T KOG0414|consen 730 EDAYSRPKFNL----EQEEVLFKILEKLLF 755 (1251)
T ss_pred chhhccccccC----chHHHHHHHHHHHHh
Confidence 44445555544 556677777765443
No 137
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.79 E-value=0.11 Score=50.82 Aligned_cols=95 Identities=13% Similarity=0.248 Sum_probs=78.7
Q ss_pred hhchHHHHHHHH------------------HhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHH
Q 005975 150 LGFLPDFLDGLF------------------NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF 211 (666)
Q Consensus 150 i~yLp~fL~gLf------------------~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~ 211 (666)
.++++.+++.|+ +---|..-++|++|-+|+..+++... ..+|+..+.+.+..-+.+ +++
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~--~~~~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCL--SRIDISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTC--SSS-HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHhhcCC-cHH
Confidence 467888888885 44456667999999999999998543 357899999999999998 999
Q ss_pred HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc
Q 005975 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (666)
Q Consensus 212 irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls 247 (666)
||..+...+..++...|..+.+.+..+++.+-..++
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888775
No 138
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.74 E-value=8.4 Score=42.53 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=128.8
Q ss_pred HHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHhhcCCCC---CH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHh
Q 005975 155 DFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSV---DY-GRMAEILVQRAA--SPDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 155 ~fL~gLf~lLsD~~--~eVR~~A~~~L~~fL~eI~~~~~~---d~-~~iI~iLl~~~~--s~d~~irl~Al~WL~~~i~l 226 (666)
.+++-....+.|++ +.+-+..-. ++.+-+-.+.+ +. +.++..+ ..+. -+..-+-.+++.-+..++..
T Consensus 90 ~~i~~~i~~l~~~~~~K~i~~~~l~----~ls~Q~f~~~~~~~~~~~~l~~~l-~~i~~~~~s~si~~erL~i~~~ll~q 164 (372)
T PF12231_consen 90 FIIDHSIESLQNPNSPKSICTHYLW----CLSDQKFSPKIMTSDRVERLLAAL-HNIKNRFPSKSIISERLNIYKRLLSQ 164 (372)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH----HHHcCCCCCcccchhhHHHHHHHH-HHhhccCCchhHHHHHHHHHHHHHHH
Confidence 36666777887754 444444333 22222212222 22 2233322 2222 23334556667778888888
Q ss_pred cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC---------------CCCCChHhHHHHHHHhcCCC
Q 005975 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP---------------ADGFDVGPILSIATRQLSSE 291 (666)
Q Consensus 227 ~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~---------------~~~~dl~~il~~L~~~L~~~ 291 (666)
.|..|......=+|.+++.+.+...++|..|......+...++.. .++--.+.+.+.+.+.+.+.
T Consensus 165 ~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~ 244 (372)
T PF12231_consen 165 FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSK 244 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCc
Confidence 888898888888889999999999999998776655443333210 01101233444555565552
Q ss_pred cHHHHHHHHHHHHHHHhh--ChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----c----cchHHHHHHHH
Q 005975 292 WEATRIEALHWISTLLNR--HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----D----LQHFRQLVVFL 361 (666)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~--~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~----~----~~~F~~fm~~L 361 (666)
+ .-+.+-=-|...+.-. ..-+--+|+.+.+...-.+++++++.++..|...|..+.. + .+-.+-++..+
T Consensus 245 ~-~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl 323 (372)
T PF12231_consen 245 D-EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPL 323 (372)
T ss_pred C-CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence 1 1233333455433322 2234457888999999999999999999999999999871 2 23333344555
Q ss_pred Hhhccccchh---hhhHHHHHHHHHhccC
Q 005975 362 VHNFRVDNSL---LEKRGALIIRRLCVLL 387 (666)
Q Consensus 362 L~lf~~d~~l---Le~Rg~~IIR~Lc~~L 387 (666)
...++..... .+.| ..++-.+|..+
T Consensus 324 ~~~l~~~~~~~~~~~~~-~~ll~~l~~ll 351 (372)
T PF12231_consen 324 SSQLRREKSSKTKEEVW-WYLLYSLCNLL 351 (372)
T ss_pred HHHhCccccccccHHHH-HHHHHHHhchH
Confidence 4444333211 1333 45666666665
No 139
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=13 Score=44.41 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=72.7
Q ss_pred hcCcccccchHhHHHHHhhhhcC-CcHHHHHHHHHHHHHHHHhhCCCCCCC-Ch-HhHHHHHHHhcC--CCcHHHHHHHH
Q 005975 226 LGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGF-DV-GPILSIATRQLS--SEWEATRIEAL 300 (666)
Q Consensus 226 l~~~~l~pylp~lL~~LL~~Lsd-~~~eIR~~A~~~n~~L~~~i~~~~~~~-dl-~~il~~L~~~L~--~~~~~tR~aaL 300 (666)
..++.|.||+|.+-..+++.+.. ++-+.|-..-.....+..-+++ .+ ++ ..++..+-..-. .+...-|-|-|
T Consensus 560 F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e---~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL 636 (978)
T KOG1993|consen 560 FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE---HIAPYASTIVQYLPLLWEESEEEPLLRCALL 636 (978)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhhccCcHHHHHHH
Confidence 34667899998888888877652 3344554444444444433322 11 22 233333333222 23345688888
Q ss_pred HHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHH-H--HHHHHHHHHHHhhc
Q 005975 301 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE-V--VLLVLEVHACIAKD 350 (666)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e-V--v~~~l~lLa~Is~~ 350 (666)
.-+..+...-+.+-.++.+-+.|.+-.+..=++|+ | ..-.+++|.-.-+|
T Consensus 637 ~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 637 ATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 99999999888888888888888775554444444 2 33456666665543
No 140
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=9.3 Score=46.36 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=63.7
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH
Q 005975 279 PILSIATRQLSSEWEATRIEALHWIS---TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF 354 (666)
Q Consensus 279 ~il~~L~~~L~~~~~~tR~aaL~WL~---~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F 354 (666)
.|+.-....+.+++-..|+.+|+-+. -+...+++.+.|..+..-|.++..+.+.++.++..+++++..+++....|
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 44445555678888999999998665 67778999999999999999999999999999999999999988644444
No 141
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.63 E-value=0.22 Score=49.45 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhcC-CchhhhhchHHHHHHH------------HHhcCCCChhHHHHHHHHHHHHHHHhhcC------
Q 005975 129 YVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGL------------FNMLSDSSHEIRQQADSALWEFLQEIKNS------ 189 (666)
Q Consensus 129 ~vR~~alswL~~L~sv-p~~~Li~yLp~fL~gL------------f~lLsD~~~eVR~~A~~~L~~fL~eI~~~------ 189 (666)
++|+.++.++..+.+. ++..+..|.+.|+|.- --++.||++.||.+|.+++..+++..+..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999999887 8889999999999876 24679999999999999999999876431
Q ss_pred ---CCC-------CHHHHHH----HHHHhcCCC-CHHHHHHHHHHHHHHHHhcCc-cc-ccchHhHHHHHhhhhcCCcHH
Q 005975 190 ---PSV-------DYGRMAE----ILVQRAASP-DEFTRLTAITWINEFVKLGGD-QL-VPYYADILGAILPCISDKEEK 252 (666)
Q Consensus 190 ---~~~-------d~~~iI~----iLl~~~~s~-d~~irl~Al~WL~~~i~l~~~-~l-~pylp~lL~~LL~~Lsd~~~e 252 (666)
+.. .++.++- .|+..++.. +..+-...+.-+..+++..|= .+ -.++++++..+.+.+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 111 1333333 233333332 333333455556566665331 11 246889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005975 253 IRVVARETNEELRAI 267 (666)
Q Consensus 253 IR~~A~~~n~~L~~~ 267 (666)
+|..+-.+.+.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999998888776543
No 142
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=13 Score=44.01 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
.....-+-.++|.++..|+|+.+++-.+....|+.+-
T Consensus 327 qn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 327 QNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 3455556669999999999999998887777666554
No 143
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.53 E-value=12 Score=43.33 Aligned_cols=142 Identities=22% Similarity=0.228 Sum_probs=94.1
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
....+.++..++++...+|..|||-.|..+.-+..+++.---.-+|-+...|.+-+-|.++.||--| .+|.++-++-..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3466778888999999999999999999988888777753334578888889888899999999888 666665433222
Q ss_pred ccccccHhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 106 ESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri-~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
| -......|..-+ +++...||..++.-|.+=.+. .|-++. -..|.+-..|+.+-+ +.+.
T Consensus 166 e-----en~~~n~l~~~vqnDPS~EVRr~allni~vdnsT--------~p~IlE----RarDv~~anRr~vY~---r~Lp 225 (885)
T COG5218 166 E-----ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNST--------YPCILE----RARDVSGANRRMVYE---RCLP 225 (885)
T ss_pred h-----HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCc--------chhHHH----HhhhhhHHHHHHHHH---HHhh
Confidence 2 122223333333 467779999887666532221 233333 556777777776533 4555
Q ss_pred Hhhc
Q 005975 185 EIKN 188 (666)
Q Consensus 185 eI~~ 188 (666)
.|+.
T Consensus 226 ~iGd 229 (885)
T COG5218 226 RIGD 229 (885)
T ss_pred hhcc
Confidence 5543
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.47 E-value=0.53 Score=50.15 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCccccc--chHhHHHH-HhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc
Q 005975 216 AITWINEFVKLGGDQLVP--YYADILGA-ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (666)
Q Consensus 216 Al~WL~~~i~l~~~~l~p--ylp~lL~~-LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~ 292 (666)
|+.....+++.....+-| .+..++.. ++|++..++++||+.|-+|.+..- ++.... -.+.+..+...+..++
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~----a~~~l~l~~~~~~~~~ 77 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCC-LLDKEL----AKEHLPLFLQALQKDD 77 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhChHH----HHHHHHHHHHHHHhCC
Confidence 444455555544444544 34477764 459999999999999999987542 222100 1355666666666668
Q ss_pred HHHHHHHHHHHHHHHhhChHHHhhhhH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch--HHHHHHHH
Q 005975 293 EATRIEALHWISTLLNRHRTEVLHFLN---------DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH--FRQLVVFL 361 (666)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~i~~~l~---------~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~--F~~fm~~L 361 (666)
...|+.|++-+..+...++.++.+-.. .+...+.+.|.+.+++++..+++-++++--.+.. -..++..|
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999999999999998876665444 4888888999999999999999999997622222 13455555
Q ss_pred Hhhc
Q 005975 362 VHNF 365 (666)
Q Consensus 362 L~lf 365 (666)
+-++
T Consensus 158 ll~y 161 (298)
T PF12719_consen 158 LLLY 161 (298)
T ss_pred HHHH
Confidence 5533
No 145
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=94.46 E-value=1.4 Score=51.00 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=115.3
Q ss_pred hhhhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhh
Q 005975 30 LQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 30 l~~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~---r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
+++-+..++.|.. -+|..++.+||+.+-+++..+ +.+ ..-+++.+.|.++..|++..|+..+ .++-.++-+..
T Consensus 374 l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 374 LETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 4455555666653 567889999999998876543 333 3446888999999999999999877 33333333322
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhh-hchHHH-HHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPDF-LDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li-~yLp~f-L~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
.-.+.|=-.-+|..+.+.+.+.++.+|+..+..++.+.--.+.... ..+-.| ..++.-+.+|++..|..+|-+.|..|
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2234565667899999999999999999999888877655554332 233333 44556677999999999999998888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhc
Q 005975 183 LQEIKNSPSVDYGRMAEILVQRA 205 (666)
Q Consensus 183 L~eI~~~~~~d~~~iI~iLl~~~ 205 (666)
+- +-.+.++++++..
T Consensus 532 ~c--------~~~~svdfll~~~ 546 (678)
T KOG1293|consen 532 TC--------NSRKSVDFLLEKF 546 (678)
T ss_pred hc--------CcHHHHHHHHHhh
Confidence 74 2234555555443
No 146
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=14 Score=43.79 Aligned_cols=349 Identities=17% Similarity=0.169 Sum_probs=182.1
Q ss_pred hhcCCC----CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchhHHHHHHHH-----------------
Q 005975 39 NSFSDQ----DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAAHLL----------------- 96 (666)
Q Consensus 39 ~~~~D~----d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA~~L----------------- 96 (666)
..++++ -+-+|..+++.+..+.- .+-...||..|+.+...++ |+-. +|-+..
T Consensus 93 qvl~ne~~~~p~fi~Nk~aqvlttLf~---~eYp~~WnsfF~dlmsv~~~~s~~---~~~dfflkvllaIdsEiad~dv~ 166 (980)
T KOG2021|consen 93 QVLGNEQTKLPDFIMNKIAQVLTTLFM---LEYPDCWNSFFDDLMSVFQVDSAI---SGLDFFLKVLLAIDSEIADQDVI 166 (980)
T ss_pred HHhCcccCCCChHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHhcccch---hhHHHHHHHHHHhhhHhhhcccc
Confidence 345565 45577777776665531 1122457777777665443 2211 122222
Q ss_pred --------HHHHHHhhcccccccHhhhHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc
Q 005975 97 --------DRLVKDIVTESDQFSIEEFIPLLRERMN----VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML 164 (666)
Q Consensus 97 --------drLlKDIv~e~~~f~L~~fIPlL~eri~----~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL 164 (666)
+.++||-..+ .+++.+...--+.+. ..||.+--.++.++..+.+..+++++. =+-|+.-|++.+
T Consensus 167 rT~eei~knnliKDaMR~---ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl 242 (980)
T KOG2021|consen 167 RTKEEILKNNLIKDAMRD---NDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFL 242 (980)
T ss_pred CChHHHHHHhhHHHHHHh---hhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHH
Confidence 2234443332 244444444444442 348888888888888888888888876 344566666777
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCC--------------------------CCC-------------------------
Q 005975 165 SDSSHEIRQQADSALWEFLQEIKNSP--------------------------SVD------------------------- 193 (666)
Q Consensus 165 sD~~~eVR~~A~~~L~~fL~eI~~~~--------------------------~~d------------------------- 193 (666)
. .+++|-+||.|+-+.+..= -+| +.|
T Consensus 243 ~--ieelR~aac~cilaiVsKk-MkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lns 319 (980)
T KOG2021|consen 243 N--IEELRIAACNCILAIVSKK-MKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNS 319 (980)
T ss_pred h--HHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhh
Confidence 5 7899999999986655311 011 011
Q ss_pred -------------HHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHhc-----CcccccchHhHHHHHhhhhcCCc----
Q 005975 194 -------------YGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLG-----GDQLVPYYADILGAILPCISDKE---- 250 (666)
Q Consensus 194 -------------~~~iI~iLl~~~~s~d~~irl~Al~-WL~~~i~l~-----~~~l~pylp~lL~~LL~~Lsd~~---- 250 (666)
+.++++++++.+.+.+.++-....- |.+-+..+. .+...-++.+++-++.+.+.|.+
T Consensus 320 eld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~n 399 (980)
T KOG2021|consen 320 ELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFN 399 (980)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhc
Confidence 2235555555555444333222222 222222221 12234456777777777776531
Q ss_pred --------HHHH-HHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhChHHHhh--
Q 005975 251 --------EKIR-VVARETNEELRAIKADPADGFDVGPILSIATRQL---SSEWEATRIEALHWISTLLNRHRTEVLH-- 316 (666)
Q Consensus 251 --------~eIR-~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L---~~~~~~tR~aaL~WL~~L~~~~p~~i~~-- 316 (666)
+|-+ ....+-...+++.+..-+..+-+..+-..+...+ ..++|+.-+.|+--+..+.+..++.-..
T Consensus 400 ddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~n 479 (980)
T KOG2021|consen 400 DDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLN 479 (980)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccccccccc
Confidence 1111 1111122223333322111111223333333333 2456888999999999999986654332
Q ss_pred --------hhHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhc--cccchhhhhHHHHHH
Q 005975 317 --------FLNDIFDTLLKA--LSDPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNF--RVDNSLLEKRGALII 380 (666)
Q Consensus 317 --------~l~~l~p~LL~~--LsD~s~eVv~~~l~lLa~Is~----~~~~F~~fm~~LL~lf--~~d~~lLe~Rg~~II 380 (666)
-+..+.+.++++ ++.+.+.|...-++++-|+.+ +.++.--++...+..+ ++.+-....|.-+..
T Consensus 480 sgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF 559 (980)
T KOG2021|consen 480 SGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLF 559 (980)
T ss_pred CccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHH
Confidence 233455666544 466677777778888888762 3444444555444433 222334466766666
Q ss_pred HHHhccCCh------HHHHHHHHHhh
Q 005975 381 RRLCVLLDA------ERVYRELSTIL 400 (666)
Q Consensus 381 R~Lc~~L~~------E~Iy~~la~iL 400 (666)
-+.-++|+. |.|-..+.+.|
T Consensus 560 ~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 560 TRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555543 45555555555
No 147
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.39 E-value=0.76 Score=44.78 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhcCCc-HHHHHHHHHHHHHHHHhhCC
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~-~~~l~pylp~lL~~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~ 270 (666)
++.+.+.-+...++++++..|-.++.-+...++.+ .+.|..+-...+..+++.+..++ +.+++.|..+...++..+..
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 56677777788889999999999999999999987 45565888888888888888654 67888999999988887765
Q ss_pred CCC------CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc
Q 005975 271 PAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (666)
Q Consensus 271 ~~~------~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L 329 (666)
.++ ...+..++..+.+.+++ ......++.-+..+...+|..+-||..++-..++..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 433 23367777777777765 5678899999999999999999999999888777655
No 148
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=14 Score=43.72 Aligned_cols=378 Identities=16% Similarity=0.167 Sum_probs=191.2
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHHHhhcccccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQ-SAAHLLDRLVKDIVTESDQF 110 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr-~gA~~LdrLlKDIv~e~~~f 110 (666)
.|++.|+..|+++---.|.-||+-+..+..-.++.. ..-+++++..+++.|+.--|+ +||.+|..++.+- ...-
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~--ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~---q~h~ 534 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG--ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE---QSHE 534 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch---hhhH
Confidence 467999999999999999999998877754444433 235788888888888776665 4446776665432 1112
Q ss_pred cHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHH--------hc---CC--CChhHHHHHH
Q 005975 111 SIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN--------ML---SD--SSHEIRQQAD 176 (666)
Q Consensus 111 ~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~--------lL---sD--~~~eVR~~A~ 176 (666)
.+...+|...|.+-. .|.+----+-+.+.-+.+--..++.+|=|++...|.+ .+ +| +..|=++.|.
T Consensus 535 k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaa 614 (970)
T COG5656 535 KFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAA 614 (970)
T ss_pred HHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244555555555432 2211111222333344444445666666666666643 11 11 1122233322
Q ss_pred H-HHHHH---HHHhhcCCC------CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh
Q 005975 177 S-ALWEF---LQEIKNSPS------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (666)
Q Consensus 177 ~-~L~~f---L~eI~~~~~------~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~L 246 (666)
. .|... +-.+.+.|. ..+-++++.++++-. ...=.+|++.+....-. -..+.|-.+++...+..++
T Consensus 615 sGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i---~dfy~Ea~dildg~tf~-skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 615 SGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEI---SDFYQEALDILDGYTFM-SKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhhhhHH-HHHhhhhhhHHHHHHHhcc
Confidence 2 12211 111112221 122334444443322 12223344444332211 2245577788888888888
Q ss_pred cCCcH-HHHHHHHHHHHHHHHhhC-CCCCCCCh-HhHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhChHHHh-hhhHH
Q 005975 247 SDKEE-KIRVVARETNEELRAIKA-DPADGFDV-GPILSIATRQLSSEWE--ATRIEALHWISTLLNRHRTEVL-HFLND 320 (666)
Q Consensus 247 sd~~~-eIR~~A~~~n~~L~~~i~-~~~~~~dl-~~il~~L~~~L~~~~~--~tR~aaL~WL~~L~~~~p~~i~-~~l~~ 320 (666)
-++.. +--..+..+...+....+ +..+.-+| ..+.++....+.+++- ..++.+.+-+-.+.-...+++. +|.|
T Consensus 691 ~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p- 769 (970)
T COG5656 691 IDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLP- 769 (970)
T ss_pred cccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhH-
Confidence 77664 333444444445443332 22233344 4555677777776554 6677777766666666555433 3444
Q ss_pred HHHHHHH---hcCCCCHHHHHHHHHH-HHHH----------hhccchHHHHHHHHHhhccccchhhhhHH-HHHHHHHhc
Q 005975 321 IFDTLLK---ALSDPSDEVVLLVLEV-HACI----------AKDLQHFRQLVVFLVHNFRVDNSLLEKRG-ALIIRRLCV 385 (666)
Q Consensus 321 l~p~LL~---~LsD~s~eVv~~~l~l-La~I----------s~~~~~F~~fm~~LL~lf~~d~~lLe~Rg-~~IIR~Lc~ 385 (666)
+|-.... ++.|+.+--+..++++ ++.+ -++++|...|.++...-..+=.+.-..+- -+.|-.+|.
T Consensus 770 lfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ipkfkrvhdkKLsvlaIltii~ 849 (970)
T COG5656 770 LFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIPKFKRVHDKKLSVLAILTIIR 849 (970)
T ss_pred HHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCcchhhhhhhHhHHHHHHHHHH
Confidence 3333333 2345544222233332 2221 14677777777776665332222222221 223444444
Q ss_pred cC----ChHHHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005975 386 LL----DAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (666)
Q Consensus 386 ~L----~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (666)
.. ++|.....+.+ .||++.+. =||.-..|.+-++
T Consensus 850 l~~v~~~~e~lv~nLg~------------vlv~l~~s----LPeAir~rake~d 887 (970)
T COG5656 850 LQEVGALPELLVHNLGE------------VLVALVTS----LPEAIRLRAKEKD 887 (970)
T ss_pred hcccccchhhhhhHHHH------------HHHHHHHh----hHHHHHHHHhhcc
Confidence 33 44555555544 34555443 4888888885543
No 149
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=19 Score=43.90 Aligned_cols=349 Identities=16% Similarity=0.148 Sum_probs=190.8
Q ss_pred HHhhhhhhHHHhhhhhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHhhcCCchhHHHHH
Q 005975 18 LYADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSADSDANVQSAA 93 (666)
Q Consensus 18 ~~~~~~~~~~~yl~~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~r---~~il~~f~eIfd~L~kl~~D~d~~Vr~gA 93 (666)
.|+.+-+.-...+..+...+.+||. |.+--||--|+-||.-.+.... ..+.++.+++.+.|.+++.+.+...-.
T Consensus 488 ~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt-- 565 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT-- 565 (1010)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH--
Confidence 3444555556677889999999998 8898999999999999876654 236789999999999999888765432
Q ss_pred HHHHHHHHHhhcccccccHh---hhHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC----c-hhhhhch-HHHHH
Q 005975 94 HLLDRLVKDIVTESDQFSIE---EFIPLLRERMNV------LNPYVRQFLVGWITVLDSVP----D-IDMLGFL-PDFLD 158 (666)
Q Consensus 94 ~~LdrLlKDIv~e~~~f~L~---~fIPlL~eri~~------~np~vR~~alswL~~L~svp----~-~~Li~yL-p~fL~ 158 (666)
..++.++.....|...|+.+ .+...+..++.+ .+..--..|+|.++.+.++- + .+++.++ |.+++
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22333333333333444322 222223333332 12233445666666554321 1 1233333 23333
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc---ch
Q 005975 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP---YY 235 (666)
Q Consensus 159 gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p---yl 235 (666)
..-.++.....|+-..+++......--.+. -+..+=++.+.+.+..+...-+-=...+-|+.+++..+...+.. |+
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~-Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~ 724 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTFLSKE-ISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYL 724 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhhcc-cCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHH
Confidence 333444444445555555544444322211 13455667788888777665444445667888888888776643 45
Q ss_pred HhHHHHHhhhhcCC---cHHHHHHHHHHHHHHHHhhCCCCCCCC--hHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHh
Q 005975 236 ADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFD--VGPILSIATRQLSS--EWEATRIEALHWISTLLN 308 (666)
Q Consensus 236 p~lL~~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~~~~~d--l~~il~~L~~~L~~--~~~~tR~aaL~WL~~L~~ 308 (666)
.-++..+-++|... +.++ ..|.+..+.++-.++. .+| ++..+.+....+.. ++...|..+++-.+.-.-
T Consensus 725 ~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~~kg---~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinaly 800 (1010)
T KOG1991|consen 725 QILLEIIKKVLTSENGEDSDC-ESACKLLEVIILNCKG---LLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALY 800 (1010)
T ss_pred HHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHHhcC---cHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 55666666677653 3444 4466666666555543 222 35555555555544 556678888876665444
Q ss_pred hChHHHhhhhH------HHHHH----HHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHhhccccchhh
Q 005975 309 RHRTEVLHFLN------DIFDT----LLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLL 372 (666)
Q Consensus 309 ~~p~~i~~~l~------~l~p~----LL~~LsD~s~eVv~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lL 372 (666)
.-|...+..++ ..|+. +-+... ..+.....+-+++-|+- ..+....++..++.++..=++-+
T Consensus 801 ynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~--~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~al 878 (1010)
T KOG1991|consen 801 YNPKLTLGILENQGFLNNFFTLWFQFINQFKK--VHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLLSLPEAL 878 (1010)
T ss_pred cCcHHHHHHHHHcCCcccHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332222 22332 222222 11222233344444442 12334456666666666555555
Q ss_pred hhH
Q 005975 373 EKR 375 (666)
Q Consensus 373 e~R 375 (666)
.+|
T Consensus 879 a~r 881 (1010)
T KOG1991|consen 879 AER 881 (1010)
T ss_pred HHH
Confidence 555
No 150
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.05 E-value=0.41 Score=47.50 Aligned_cols=112 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCC-C-ChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH---HhhC
Q 005975 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG-F-DVGPILSIATRQLSSEWEATRIEALHWISTL---LNRH 310 (666)
Q Consensus 236 p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~-~-dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L---~~~~ 310 (666)
+..||..+..+...+.-.|..|.+.-.++++... ++. + -+.+++..+...|.+.+.++..++|.-|..| ....
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~--~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG--GEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666666777777788889888877776611 111 1 1467777888999999999999999999999 8889
Q ss_pred hHHHhhhhHHHHHHHH----Hh--cCC-------C-CHHHHHHHHHHHHHHhh
Q 005975 311 RTEVLHFLNDIFDTLL----KA--LSD-------P-SDEVVLLVLEVHACIAK 349 (666)
Q Consensus 311 p~~i~~~l~~l~p~LL----~~--LsD-------~-s~eVv~~~l~lLa~Is~ 349 (666)
++.+.||+.+++|.+= +. +.| . --+++..++++|.+.+.
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 9999999999999875 21 111 1 13566677777777664
No 151
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.97 E-value=0.5 Score=50.63 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc----CCcHHHHHHHHHHHHHHHHhhCCCC
Q 005975 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS----DKEEKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 197 iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls----d~~~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
....++..+.++|..++..|+.-+..++..++........++++.++..+. .++.+....|..+...+++.-.--.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 455566688889999999999999999888766554422344444444444 3455667777777776653210000
Q ss_pred CCCChHhHHHHHHHhc-----C--CCcHHHHHHHH--HHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC-HHHHHHHHH
Q 005975 273 DGFDVGPILSIATRQL-----S--SEWEATRIEAL--HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLE 342 (666)
Q Consensus 273 ~~~dl~~il~~L~~~L-----~--~~~~~tR~aaL--~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~eVv~~~l~ 342 (666)
.-++ ...++.+...+ . ..+.+....++ .|+..+-...-+++..+. ++|.|...+.+.. +.|++.++.
T Consensus 186 ~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 186 VFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHH
Confidence 0011 34455555555 1 22344444444 688888887777776666 9999998887754 778889999
Q ss_pred HHHHHhhcc
Q 005975 343 VHACIAKDL 351 (666)
Q Consensus 343 lLa~Is~~~ 351 (666)
++..+.+..
T Consensus 263 ~l~Nl~~~~ 271 (312)
T PF03224_consen 263 ILRNLLSKA 271 (312)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHhcc
Confidence 999988543
No 152
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.85 E-value=2.5 Score=44.20 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC--cHHHHHHHHHHHHHHHHhhCCCC
Q 005975 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 195 ~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~--~~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
+.-|..+.+.+.......|.++..-++. +.. |.-+|.+.+.|.+. ++-+|-.|.++.+. +.+
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQ---l~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGa----Ia~-- 249 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQ---LQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGA----IAD-- 249 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhh---ccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHh----hcC--
Confidence 4556677777776667777776664442 222 33455555555553 57799888887754 222
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005975 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (666)
Q Consensus 273 ~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~ 310 (666)
++.+++|.+.+.|+...+|+.|--.|-++--..
T Consensus 250 -----e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 250 -----EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999988777654443
No 153
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.85 E-value=15 Score=42.14 Aligned_cols=348 Identities=16% Similarity=0.182 Sum_probs=179.0
Q ss_pred hhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc--hh-hhhHHHHHHHHHHhhcCCc--hhHHHHHH-HH
Q 005975 23 FFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DF-IIFFNQIFDALCKLSADSD--ANVQSAAH-LL 96 (666)
Q Consensus 23 ~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~--~i-l~~f~eIfd~L~kl~~D~d--~~Vr~gA~-~L 96 (666)
-..++..++..+||++..++.++..||....|.+.+|-|.++. .+ +| +++|.+...+++ +.||+=+- .+
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LP-----v~~Ll~q~~~~~~s~~vrnfsliyi 88 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLP-----VEALLKQYKEPSDSSFVRNFSLIYI 88 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCc-----HHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3456788999999999999999999999999999999887765 33 34 677888787777 78888772 22
Q ss_pred HHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh-------
Q 005975 97 DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH------- 169 (666)
Q Consensus 97 drLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~------- 169 (666)
..- +...+...-..++|.+.+.|.....+-. +....+...+.++++++.|...
T Consensus 89 ~~g----~~Rl~~~e~~~llP~ll~~is~~~~~~~----------------~~~~~~~~~f~~~~k~~~~~~~~~~~~~~ 148 (501)
T PF13001_consen 89 EMG----FDRLDDEERRELLPSLLKGISKKPKQHQ----------------DSFLRLARLFNILLKLLPDWKEPPRGSKE 148 (501)
T ss_pred HHh----hhcCCHHHHHHHHHHHHHhhccCchhhh----------------HHHHHHHHHHHHHhhcCCccccccccchh
Confidence 111 1112223356778888888763211111 1111111222222222222110
Q ss_pred --hHHHH---HHHHHHHHHHHh------------hcCCC---CCHHHHHHHHHHhcCC-----CC----HHHHHHHHHHH
Q 005975 170 --EIRQQ---ADSALWEFLQEI------------KNSPS---VDYGRMAEILVQRAAS-----PD----EFTRLTAITWI 220 (666)
Q Consensus 170 --eVR~~---A~~~L~~fL~eI------------~~~~~---~d~~~iI~iLl~~~~s-----~d----~~irl~Al~WL 220 (666)
+.|.. ...+.+.++-.- ...++ .+.+.+-..-..+... ++ .++|+..+.++
T Consensus 149 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL 228 (501)
T PF13001_consen 149 DEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFL 228 (501)
T ss_pred hhcHHHHHhhcchHHHHHcchhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 01100 000111111000 00000 0111111111111111 11 23555556666
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--C--------
Q 005975 221 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--S-------- 290 (666)
Q Consensus 221 ~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~-------- 290 (666)
....- +-- ..++.++-+-+|+..+|.+.|...... ...+ ++=..+++.|...+. .
T Consensus 229 ~sg~f-------~d~-~~~~~~liAsad~~~~V~~~ae~~LKr---~~~~----~ed~~~V~~L~~Ly~G~~~~~~~~~~ 293 (501)
T PF13001_consen 229 ASGFF-------PDE-ERFPPLLIASADSNSSVSDRAEDLLKR---LSVS----LEDPDLVDRLFDLYLGKGIPPENGRP 293 (501)
T ss_pred HhcCC-------CcH-hHHhheeeEEeCCcchHHHHHHHHHhh---cCCC----CCCHHHHHHHHHHHHhcCCchhcCCC
Confidence 43221 111 223333445578887877666554432 2221 333677776666655 2
Q ss_pred -CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHH---HHHhh--ccchHHHH----H
Q 005975 291 -EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVH---ACIAK--DLQHFRQL----V 358 (666)
Q Consensus 291 -~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~--s~eVv~~~l~lL---a~Is~--~~~~F~~f----m 358 (666)
.+...|+..+..|..=..-+ ...+.+...+..+|..+ ...++..+++.+ ..+.. +....+.+ .
T Consensus 294 pa~~~lq~kIL~~L~kS~~Aa-----~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~ 368 (501)
T PF13001_consen 294 PASPRLQEKILSLLSKSVIAA-----TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVIL 368 (501)
T ss_pred CCCHHHHHHHHHHHHHhHHHH-----hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHH
Confidence 34556777777666422211 34455666666777766 567777777776 44442 12222222 2
Q ss_pred HHHHhhcc------ccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhccc-----CChHHHHHHHHHHHHHhccchhHH
Q 005975 359 VFLVHNFR------VDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE-----ADLDFACTMVQALNLILLTSSELS 427 (666)
Q Consensus 359 ~~LL~lf~------~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~-----~dl~F~~~mVq~Ln~iLLTs~El~ 427 (666)
.++..... ++..-.+-| ...|.+++.+.... +|+.++..+.+.| ..|-.
T Consensus 369 ~~g~p~~~~~~~~~~~~~~~~lR--------------~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL------~~~~~ 428 (501)
T PF13001_consen 369 SQGWPLIQDSSSQSNSSEDIELR--------------SLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL------EDESP 428 (501)
T ss_pred hcCccccccccccCCCcccHHHH--------------HHHHHHHHHHHccCcccccccHHHHHHHHHHh------hCcch
Confidence 22222221 111112222 35899999998873 6777777777766 77788
Q ss_pred HHHHHHHh
Q 005975 428 ELRDLLKK 435 (666)
Q Consensus 428 ~lR~~L~~ 435 (666)
++|-..++
T Consensus 429 evr~sIqe 436 (501)
T PF13001_consen 429 EVRVSIQE 436 (501)
T ss_pred HHHHHHHH
Confidence 88888876
No 154
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.56 E-value=0.54 Score=43.77 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhc-ccc--------------ccc
Q 005975 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT-ESD--------------QFS 111 (666)
Q Consensus 47 rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~-e~~--------------~f~ 111 (666)
-||...|.++..|++. +--..|++.++.+..++..+...+..+-..|..+.+++.. ... ...
T Consensus 3 ~i~~kl~~~l~~i~~~---~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKR---DWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHH---HTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 3677778887777653 2234577888888888877544444444788888888874 110 122
Q ss_pred HhhhHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005975 112 IEEFIPLLRERMNVLN----PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 112 L~~fIPlL~eri~~~n----p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
.+.++..+.+.+.... +.....++.++....+..+.+.+.. ..+++.+|++++++ +.|..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 4555555555554322 7888889998888777666655554 45999999999555 4588888876
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=5.6 Score=43.18 Aligned_cols=184 Identities=18% Similarity=0.133 Sum_probs=110.7
Q ss_pred chHHHHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHH
Q 005975 2 HKWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCK 80 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i-l~~f~eIfd~L~k 80 (666)
++|++..+....+.-=-++.-|..+...+.. +|.....-...+.+=|.-|.+-+...+....... +.- ..-+..|..
T Consensus 54 ~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~-~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~ 131 (342)
T KOG2160|consen 54 RKWLQELMQAHTEDQKDFVEDMKVISDVMSM-IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLG 131 (342)
T ss_pred hHHHHHHHHHhhhhhhhhcccchhHHHHHHh-hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHH
Confidence 4788888877776655677778888877777 3333333345566777777666666665443221 111 122444555
Q ss_pred hhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhh--cCCchhhhhchHHH
Q 005975 81 LSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLD--SVPDIDMLGFLPDF 156 (666)
Q Consensus 81 l~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~-np~vR~~alswL~~L~--svp~~~Li~yLp~f 156 (666)
++.++++.+|..| ..+..++.--..-...+-=..+.+.|...+... +-.+|.-++..|+.+. ..|+.+-.--++.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G- 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG- 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-
Confidence 8899999999888 454443331111000000011455666666554 4477788888888664 3566655555555
Q ss_pred HHHHHHhcCCCChhHH--HHHHHHHHHHHHHhhc
Q 005975 157 LDGLFNMLSDSSHEIR--QQADSALWEFLQEIKN 188 (666)
Q Consensus 157 L~gLf~lLsD~~~eVR--~~A~~~L~~fL~eI~~ 188 (666)
+.+|-..+.+++.+|| ..|..++..++++-+.
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 7788888988655544 5566888888876644
No 156
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=5.6 Score=43.21 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC--cccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCC-CCChHhHHH
Q 005975 206 ASPDEFTRLTAITWINEFVKLGG--DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD-GFDVGPILS 282 (666)
Q Consensus 206 ~s~d~~irl~Al~WL~~~i~l~~--~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~-~~dl~~il~ 282 (666)
.+.+.+-+..|+.=+.++++--. .++.+ +..+.+++. .+.+++.++|..|..+.++....-....+ .+.. ..+.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHH
Confidence 34466778888887777766421 12222 234444444 88899999999999988776432110000 0001 1334
Q ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCCCC--HHHHHHHHHHHHHHhh
Q 005975 283 IATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPS--DEVVLLVLEVHACIAK 349 (666)
Q Consensus 283 ~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s--~eVv~~~l~lLa~Is~ 349 (666)
.|...+. ++...+|-.||-.+..+.++.+.+...++. + +-.|.+.|.+++ .....+++.+++.+..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 4555554 445677899999999999999888776654 3 556667777754 4456688888888873
No 157
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.49 E-value=2.2 Score=42.46 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=47.7
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHH
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH 94 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~ 94 (666)
+..|++. |+++..+++..||..|.+-+.-|.+ .++.+-.+.++.|.-+.+|+++.+|+-|.
T Consensus 6 ~Qryl~~----Il~~~~~~~~~vr~~Al~~l~~il~----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~ 66 (187)
T PF12830_consen 6 VQRYLKN----ILELCLSSDDSVRLAALQVLELILR----QGLVNPKQCVPTLIALETSPNPSIRSRAY 66 (187)
T ss_pred HHHHHHH----HHHHHhCCCHHHHHHHHHHHHHHHh----cCCCChHHHHhHhhhhhCCCChHHHHHHH
Confidence 3455554 5557789999999999998777664 23445568999999999999999999993
No 158
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=11 Score=40.43 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=48.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 119 LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 119 L~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
+.+.+.+.+|.||+.++.-+-.+...+...+..|=-..++.+++++.|+.+ .+.+| .+|..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~-~alVnl 69 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAA-TALVNL 69 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHH-HHHHHH
Confidence 446677899999999998888777667777888888899999999999988 66655 334443
No 159
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=8.2 Score=45.85 Aligned_cols=274 Identities=14% Similarity=0.201 Sum_probs=134.7
Q ss_pred hhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHH
Q 005975 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (666)
Q Consensus 21 ~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrL 99 (666)
++....+.......+-+=.|+..++-.|-|-|+.++.+.......+..+ .+..|--+++.+.+..|.+| ..|.++
T Consensus 234 ~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkv 309 (865)
T KOG1078|consen 234 ELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKV 309 (865)
T ss_pred HHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3444445555566677778888888888888887765543221112222 45556666788888999999 666664
Q ss_pred HHHhh--------------ccc----------------ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005975 100 VKDIV--------------TES----------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (666)
Q Consensus 100 lKDIv--------------~e~----------------~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~L 149 (666)
.-... +++ .+-+++.++..+...+.+.+-..+..++..+..++..-+..-
T Consensus 310 Am~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~ 389 (865)
T KOG1078|consen 310 AMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH 389 (865)
T ss_pred HHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH
Confidence 43222 211 122334444444444433333333333333333332222111
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
..++ .||..+.+ .+..-+-+++ +++.++..+.. +++.|..+++-+.+|++-+.
T Consensus 390 ~~~m-~FL~~~Lr--~eGg~e~K~a----------------------ivd~Ii~iie~-~pdsKe~~L~~LCefIEDce- 442 (865)
T KOG1078|consen 390 TVMM-NFLSNMLR--EEGGFEFKRA----------------------IVDAIIDIIEE-NPDSKERGLEHLCEFIEDCE- 442 (865)
T ss_pred HHHH-HHHHHHHH--hccCchHHHH----------------------HHHHHHHHHHh-CcchhhHHHHHHHHHHHhcc-
Confidence 1111 11111111 1222233333 33333333321 22233333444444443221
Q ss_pred ccccchHhHHHHHhhhhc---------------------CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc
Q 005975 230 QLVPYYADILGAILPCIS---------------------DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (666)
Q Consensus 230 ~l~pylp~lL~~LL~~Ls---------------------d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L 288 (666)
++.+..-++..++ -.+..+|..|..+...+. . ....-...+...++..+
T Consensus 443 -----~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg---~--~~~~l~~sI~vllkRc~ 512 (865)
T KOG1078|consen 443 -----FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG---A--QDVVLLPSILVLLKRCL 512 (865)
T ss_pred -----chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh---c--CCCCccccHHHHHHHHh
Confidence 1222222222222 234456666665554443 1 12223467777888888
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q 005975 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
.|.+.++|.+|--.+..+-++...-..++ .+++ .++.+-+.+++..+
T Consensus 513 ~D~DdevRdrAtf~l~~l~~~~~~l~~~~-~~l~----~s~~~le~~l~~y~ 559 (865)
T KOG1078|consen 513 NDSDDEVRDRATFYLKNLEEKDDVLNQNY-SGLF----VSIPGLERSLVSYI 559 (865)
T ss_pred cCchHHHHHHHHHHHHHhhhhhhhhcccc-cccc----cccchhHHHHHHHh
Confidence 99999999999999888886665555555 3333 33444455555544
No 160
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.33 E-value=8.4 Score=46.70 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 279 PILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 279 ~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
..++.+.++|. ++....|-.....++.+...+ ....+..+|.+-.+|.|+++-||+.++-+|+++-.
T Consensus 968 r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq 1035 (1529)
T KOG0413|consen 968 RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQ 1035 (1529)
T ss_pred HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 46777777775 334555655555666666655 34567778889999999999999999999999874
No 161
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=1 Score=49.38 Aligned_cols=130 Identities=17% Similarity=0.289 Sum_probs=93.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHh
Q 005975 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (666)
Q Consensus 35 ~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~ 113 (666)
.-++.-+...+..||.-|.+-+....+....+......+++..+..++.|.+..||.+. .+++.++--...+.-.--..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 44566678999999998877776666653334445778999999999999999999998 67666544333232122367
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc
Q 005975 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML 164 (666)
Q Consensus 114 ~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL 164 (666)
.|+|.+.--|...-|.+|.....-+.++..-.+..+..+...+++....++
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 778888888888999999999999998877665556666666665555433
No 162
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.92 E-value=1.3 Score=51.71 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=102.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHH
Q 005975 202 VQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPIL 281 (666)
Q Consensus 202 l~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il 281 (666)
+..++-.+++.|..-..-|.+-++..++++. ..+++|.++..+++.+ ++.....-+.+.......+-.-..++
T Consensus 260 Leel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~ 332 (690)
T KOG1243|consen 260 LEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRII 332 (690)
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchh
Confidence 3445556666666555555554555555555 5688888888888766 45555666666655432222235799
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 282 SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 282 ~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
+.|.+.|...+..+|+-=|.-+-.+.++..+++ ..+.+||.+...+.|.++-+|..++..++.+++
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888888776664 457899999999999999999999999998884
No 163
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.87 E-value=20 Score=40.47 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=143.6
Q ss_pred HHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhhhh
Q 005975 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLG 151 (666)
Q Consensus 74 Ifd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~-np~vR~~alswL~~L~svp~~~Li~ 151 (666)
.+..+.+++...|.-+...| ..|..++..-........++.+...+.+.+... ++.....++.++..+...+.--..-
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 45555566655555444444 666665431111111224556667777776653 4677888888888887777643222
Q ss_pred chHHHHHHHHHhcCCCChhHHH--HHHHHHH--HHHHHhhcCCCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHh
Q 005975 152 FLPDFLDGLFNMLSDSSHEIRQ--QADSALW--EFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKL 226 (666)
Q Consensus 152 yLp~fL~gLf~lLsD~~~eVR~--~A~~~L~--~fL~eI~~~~~~d~~~iI~iLl~~~~s~d-~~irl~Al~WL~~~i~l 226 (666)
.=...++.|..++.-....+.- .+.-|+= .|-.+... ...-.++|+.+++-++..- |-+=+.++..+.+++..
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~--~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE--VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH--hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 2223556666666432212221 1222211 11111111 1112457777777665432 33334466677777775
Q ss_pred cCcc--cccchHhHHH----HHhhhhc---CCcHHHHHHHHHHHHHHHHhhCC-------------------C---CCC-
Q 005975 227 GGDQ--LVPYYADILG----AILPCIS---DKEEKIRVVARETNEELRAIKAD-------------------P---ADG- 274 (666)
Q Consensus 227 ~~~~--l~pylp~lL~----~LL~~Ls---d~~~eIR~~A~~~n~~L~~~i~~-------------------~---~~~- 274 (666)
+... -..+.+.++. .++..|. .+|+|+.+.-....+.|-+.+.+ + .+.
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3211 1122333332 2333443 46777766555444333322211 0 000
Q ss_pred -------C--ChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHH--HhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 005975 275 -------F--DVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTE--VLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (666)
Q Consensus 275 -------~--dl~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~--i~~~l~~l~p~LL~~LsD~s~eVv~~~l~ 342 (666)
+ +=-+++..|.+.+. +.+..+-.-|..=++++.+.+|.+ +...+. .=..++..+++++++|+..|+.
T Consensus 340 W~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 340 WRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHH
Confidence 0 11467777888874 444555555567799999998755 333332 3456788899999999999999
Q ss_pred HHHHHh
Q 005975 343 VHACIA 348 (666)
Q Consensus 343 lLa~Is 348 (666)
+..++-
T Consensus 419 avQklm 424 (429)
T cd00256 419 AVQKLM 424 (429)
T ss_pred HHHHHH
Confidence 888764
No 164
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.84 E-value=12 Score=40.44 Aligned_cols=199 Identities=12% Similarity=0.136 Sum_probs=109.2
Q ss_pred cchHhHHHHHhhhhcCCcHHHHHHHH-HHHHHHHHhhCCCCCCCCh----HhHHHHHHHhcC---CCcHHHHHHHHHHHH
Q 005975 233 PYYADILGAILPCISDKEEKIRVVAR-ETNEELRAIKADPADGFDV----GPILSIATRQLS---SEWEATRIEALHWIS 304 (666)
Q Consensus 233 pylp~lL~~LL~~Lsd~~~eIR~~A~-~~n~~L~~~i~~~~~~~dl----~~il~~L~~~L~---~~~~~tR~aaL~WL~ 304 (666)
.++|.++..++.--..+.|+.|+.-. .+...+.+-+++. -.-.+ +.+.+....... .+-++.|..-...+.
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~-~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~ 145 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL-IQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLR 145 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG-CCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHH
Confidence 45677777666655545555553311 2222232222220 01112 233332333332 235789999999999
Q ss_pred HHHhhChHHHhhh----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-----c--------cchHHHHHHHHHhhc-c
Q 005975 305 TLLNRHRTEVLHF----LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-----D--------LQHFRQLVVFLVHNF-R 366 (666)
Q Consensus 305 ~L~~~~p~~i~~~----l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-----~--------~~~F~~fm~~LL~lf-~ 366 (666)
.+.+.|++.+... +..++..++..+.++..+|...+|.++..+-+ + +.||-.+++.++..+ .
T Consensus 146 ~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 146 AINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999988765 45567777788899999999999998777662 1 133444445555433 3
Q ss_pred ccchhhhhHHHHHHHHHhcc---------------CChHHHHHHHHHhhccc---CChHHHHHHHHHHHHHhccchhHHH
Q 005975 367 VDNSLLEKRGALIIRRLCVL---------------LDAERVYRELSTILEGE---ADLDFACTMVQALNLILLTSSELSE 428 (666)
Q Consensus 367 ~d~~lLe~Rg~~IIR~Lc~~---------------L~~E~Iy~~la~iL~~~---~dl~F~~~mVq~Ln~iLLTs~El~~ 428 (666)
++++--=+--..++++|... -|.+-+...+++.|.+. -+..-+..+|+.|-. ...+..+
T Consensus 226 ~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~---~~~d~~~ 302 (319)
T PF08767_consen 226 SDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFE---LNNDPEK 302 (319)
T ss_dssp TT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---TTT-HHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---hcCCHHH
Confidence 33332222224577777743 22455666677776653 222223333333221 2235778
Q ss_pred HHHHHHh
Q 005975 429 LRDLLKK 435 (666)
Q Consensus 429 lR~~L~~ 435 (666)
||..||+
T Consensus 303 Fk~~lrD 309 (319)
T PF08767_consen 303 FKTHLRD 309 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 165
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.63 E-value=0.99 Score=43.85 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=70.1
Q ss_pred chHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHH-------HhhcCCC----------------------CCH-----HH
Q 005975 152 FLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQ-------EIKNSPS----------------------VDY-----GR 196 (666)
Q Consensus 152 yLp~fL~gLf~lL-sD~~~eVR~~A~~~L~~fL~-------eI~~~~~----------------------~d~-----~~ 196 (666)
-.|++|+.|++++ ++.+.++|.+|-++|+-+-. .+..... ... .-
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 3699999999999 56679999999888876531 1100000 000 11
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHh
Q 005975 197 MAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 197 iI~iLl~~~~s~d~-~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (666)
.++.|+..++++.- .-...++..+..+.+..+....||+|+++|.++..+....+..|+..-.-...+...
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 22333333333321 112234444444445566677999999999999999877777777665555555444
No 166
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=2.4 Score=45.24 Aligned_cols=123 Identities=21% Similarity=0.251 Sum_probs=92.5
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----cc
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----LQ 352 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-----~~ 352 (666)
+..+.-....|.+++|+....+|.-+.-|.+-.++.+.+.+.+++.++++.+......|-..+|.+++.|-+. ++
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788999999999999999999999999999999999999999999999999999999999998842 22
Q ss_pred hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005975 353 HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (666)
Q Consensus 353 ~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (666)
..+..+..|+..=..|++.+-+-+.-..+-+-....|.++-+.+..++
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~ 214 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL 214 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 344455555555555555555444444555555555555555554444
No 167
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.29 E-value=1.5 Score=51.09 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhC
Q 005975 195 GRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 195 ~~iI~iLl~~~~s----~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~ 269 (666)
.++.|+..+-|.+ .|++++.+|---+..+..++. .|..+=+|.++..|. .++|.||..|.-..+.+.-...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~----~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF----EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 4566666666655 689999988777777776654 356667777777787 7899999877555444321110
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
--.++.-+.|-+.+.|++..+|-.|+.-+..+.-.-.-++..++ +.+..+|.|++.++-..+--.+-+|++
T Consensus 967 -----~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGql----g~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 967 -----TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQL----GKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -----hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccch----hhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 01367778899999999999999999888877766555555444 556678899999998888878888874
No 168
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=32 Score=41.40 Aligned_cols=315 Identities=18% Similarity=0.212 Sum_probs=197.3
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHH-----------
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH----------- 94 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~----------- 94 (666)
.+.--+.|..-|+..+-..-..+...-.|++|-|+| .+.-..|+.+++.|++-++..|-++-+|.-
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~---~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGK---RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc---cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 345556777888888888888999999999999974 355567999999999888888888777652
Q ss_pred --------------HHHHHHH---Hhhcc---------cc------------------------------cccHhhhHHH
Q 005975 95 --------------LLDRLVK---DIVTE---------SD------------------------------QFSIEEFIPL 118 (666)
Q Consensus 95 --------------~LdrLlK---DIv~e---------~~------------------------------~f~L~~fIPl 118 (666)
.||+.++ |+... .+ +-.++.+++-
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 1222111 11110 00 2346777777
Q ss_pred HHHhhcCCCH-------------HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHH--HHHHHHHHHHH
Q 005975 119 LRERMNVLNP-------------YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFL 183 (666)
Q Consensus 119 L~eri~~~np-------------~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR--~~A~~~L~~fL 183 (666)
+...+...+| .+|.-+|+-++....-.+.++-+|+|+|+.....++.+..++.| ..+++++.-+.
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt 318 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLT 318 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 7777763332 67888999999999999999999999999999999999888777 34445554443
Q ss_pred HHhhcCCC----CCHHH---------------------------HHHHHHHhcCCCCHHH-HHHHHHHHHHHHHhcCccc
Q 005975 184 QEIKNSPS----VDYGR---------------------------MAEILVQRAASPDEFT-RLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 184 ~eI~~~~~----~d~~~---------------------------iI~iLl~~~~s~d~~i-rl~Al~WL~~~i~l~~~~l 231 (666)
...++ ++ +.-++ -++++..-+...|-.+ |..|+..++.+++.....+
T Consensus 319 ~V~~r-~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v 397 (960)
T KOG1992|consen 319 SVSRR-PHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV 397 (960)
T ss_pred HHHhh-hhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchh
Confidence 33322 21 01122 3444444444444444 4567888888888777666
Q ss_pred ccchHhHHHHHhhhhc-CCcHHHH----------HHHHHHHHHHHHhhCCCCCCCChHhH-HHHHHHhcC----CCcHHH
Q 005975 232 VPYYADILGAILPCIS-DKEEKIR----------VVARETNEELRAIKADPADGFDVGPI-LSIATRQLS----SEWEAT 295 (666)
Q Consensus 232 ~pylp~lL~~LL~~Ls-d~~~eIR----------~~A~~~n~~L~~~i~~~~~~~dl~~i-l~~L~~~L~----~~~~~t 295 (666)
.+-+...+..++..-+ ++..+-+ ..|.+....-.+ +....+-+|+.+. .+.+.-.|. .+.+..
T Consensus 398 t~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~G-vtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pil 476 (960)
T KOG1992|consen 398 TGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHG-VTSTNELVDVVDFFANQILPDLLSPNVNEFPIL 476 (960)
T ss_pred HHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcc-eeeccccccHHHHHHHHhhHHhccCccccccch
Confidence 6666666666665332 3321111 111111100000 0111122343222 223333343 455677
Q ss_pred HHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 296 RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 296 R~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
|.++++.+..+...-+.. |+=..+|.++..|.-++.-|=+-+.-.+.++-
T Consensus 477 ka~aIKy~~~FR~ql~~~---~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 477 KADAIKYIYTFRNQLGKE---HLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred hhcccceeeeecccCChH---HHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 999999998888876654 55578899999999888777766666666654
No 169
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.23 E-value=4.1 Score=47.66 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=85.6
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCC----------CCCHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHhcCcccc
Q 005975 167 SSHEIRQQADSALWEFLQEIKNSP----------SVDYGRMAEILVQRAA----SPDEFTRLTAITWINEFVKLGGDQLV 232 (666)
Q Consensus 167 ~~~eVR~~A~~~L~~fL~eI~~~~----------~~d~~~iI~iLl~~~~----s~d~~irl~Al~WL~~~i~l~~~~l~ 232 (666)
.++.+|..|.-+++.++...-... ....+++++.+...+. ..|+..+..++..|+++-
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-------- 518 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-------- 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--------
Confidence 457899999999999988765441 1224555555555444 456677777777776542
Q ss_pred cchHhHHHHHhhhhcCC---cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHH
Q 005975 233 PYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLL 307 (666)
Q Consensus 233 pylp~lL~~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tR~aaL~WL~~L~ 307 (666)
.|..++.+.+.+.+. ...+|..|..+...+.. ..-..+.+++...+.+ ++.+.|+||+.-|.
T Consensus 519 --~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~--------~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm--- 585 (618)
T PF01347_consen 519 --HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK--------HCPEKVREILLPIFMNTTEDPEVRIAAYLILM--- 585 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG--------T-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH---
T ss_pred --CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhh--------cCcHHHHHHHHHHhcCCCCChhHHHHHHHHHH---
Confidence 478889999988766 57888888777643321 1234777777777754 45779999974433
Q ss_pred hhChHHHhhhhHHHHHHHHHhc-CCCCHHHHHHHH
Q 005975 308 NRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVL 341 (666)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~L-sD~s~eVv~~~l 341 (666)
+..|.. .++..+...+ .+++.+|..-+.
T Consensus 586 ~~~P~~------~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 586 RCNPSP------SVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HT---H------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred hcCCCH------HHHHHHHHHHhhCchHHHHHHHH
Confidence 232332 1222333333 467788776443
No 170
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.12 E-value=15 Score=41.69 Aligned_cols=305 Identities=15% Similarity=0.160 Sum_probs=183.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHH--------HH-HhhcCCchhHHHHH-HHHHHHHHHh---hc-
Q 005975 41 FSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDA--------LC-KLSADSDANVQSAA-HLLDRLVKDI---VT- 105 (666)
Q Consensus 41 ~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~--------L~-kl~~D~d~~Vr~gA-~~LdrLlKDI---v~- 105 (666)
......+||..|...+....|.... ..-.||.-+|+. |. -.+.|+.+..|.-| ..+..++... .+
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~ 84 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSV 84 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456788999998888887776543 333666655542 22 23578888888777 5556655422 11
Q ss_pred -cc------ccccH---------hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-h-hhchHHHHHHHHHhcCCC
Q 005975 106 -ES------DQFSI---------EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-M-LGFLPDFLDGLFNMLSDS 167 (666)
Q Consensus 106 -e~------~~f~L---------~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~-L-i~yLp~fL~gLf~lLsD~ 167 (666)
++ ..|++ -.++-.+.+ ....|.+-.-++.++.++.+..+-+ + +.++-+|...+-+++...
T Consensus 85 a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~--~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~ 162 (728)
T KOG4535|consen 85 AEDTSDHAFTPFSVMIACSIRELHRCLLLALV--AESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHK 162 (728)
T ss_pred HhccCCcCCCchHHHHHHHHHHHHHHHHHHHH--HhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcC
Confidence 11 12221 111112222 2345677777889999888765533 2 468889999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCC------------------CC---C-H------HHHHH--------------------
Q 005975 168 SHEIRQQADSALWEFLQEIKNSP------------------SV---D-Y------GRMAE-------------------- 199 (666)
Q Consensus 168 ~~eVR~~A~~~L~~fL~eI~~~~------------------~~---d-~------~~iI~-------------------- 199 (666)
++.||..+-..++.++..-+--| +. | | +...+
T Consensus 163 d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 163 DVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred CCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 99999988777776664322111 00 0 0 00000
Q ss_pred --------------HHHHhcCCC--CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHH
Q 005975 200 --------------ILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (666)
Q Consensus 200 --------------iLl~~~~s~--d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~ 263 (666)
-...+..+. -..+|++|+.-+..+....+ -..-|+-++..++-.++.+.++.+..-+.++.++
T Consensus 243 ~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~ 321 (728)
T KOG4535|consen 243 SIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEE 321 (728)
T ss_pred eeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHH
Confidence 001111111 02467777766654444322 2345688899999999999999999999988877
Q ss_pred HHHhhC-C----CC------------------CC--CC----------hHhHH------------------HHHHHhcC-
Q 005975 264 LRAIKA-D----PA------------------DG--FD----------VGPIL------------------SIATRQLS- 289 (666)
Q Consensus 264 L~~~i~-~----~~------------------~~--~d----------l~~il------------------~~L~~~L~- 289 (666)
+..... + +. .. .| -+... .+....+.
T Consensus 322 lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d 401 (728)
T KOG4535|consen 322 LGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCND 401 (728)
T ss_pred HHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccc
Confidence 643221 1 00 00 00 01111 11122222
Q ss_pred CCcHHHHHHHHHHHHHHHh-hChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 290 SEWEATRIEALHWISTLLN-RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 290 ~~~~~tR~aaL~WL~~L~~-~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+++-.+|.+|+..++.+.- .+-.....+..+-+..++.+|.|.+=.++.++.|.++.|+
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT 461 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT 461 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH
Confidence 2334468888887765433 3556667788889999999999999999999999999999
No 171
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.05 E-value=23 Score=39.24 Aligned_cols=231 Identities=19% Similarity=0.211 Sum_probs=147.2
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhh-h-hchHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHH
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDM-L-GFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQ 184 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~L-i-~yLp~fL~gLf~lLsD~-~~eVR~~A~~~L~~fL~ 184 (666)
+..+..|++.+...+.+.++.+|..+.-.++.+..-+. ... . .+++.|+-- .+-.|. +..-|.+|-+....|++
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~--SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIR--SLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHh--hhcccCCChHHHHHHHHHHHHHHH
Confidence 34567778888877777779999999988876655442 221 1 234443332 223343 44578888888888885
Q ss_pred HhhcCCCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHH
Q 005975 185 EIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (666)
Q Consensus 185 eI~~~~~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~ 263 (666)
+++.+ -++ ..++..++....++++..|..|++-+.|+.-..|+-+. -.+-+..++..+.|...+ .+..+...
T Consensus 98 -~~~~~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~--~~gG~~~L~~~l~d~~~~---~~~~l~~~ 170 (371)
T PF14664_consen 98 -IKKGP-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA--ECGGIRVLLRALIDGSFS---ISESLLDT 170 (371)
T ss_pred -hcCCc-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH--HcCCHHHHHHHHHhccHh---HHHHHHHH
Confidence 32211 122 66888999999999999999999999988876554322 223346677777765444 44455556
Q ss_pred HHHhhCCCC------CCCChHhHHHHHHHh----cCCCcHHHHHHHH-HHHHHHHhhChHHHh-hhhH-HHHHHHHHhcC
Q 005975 264 LRAIKADPA------DGFDVGPILSIATRQ----LSSEWEATRIEAL-HWISTLLNRHRTEVL-HFLN-DIFDTLLKALS 330 (666)
Q Consensus 264 L~~~i~~~~------~~~dl~~il~~L~~~----L~~~~~~tR~aaL-~WL~~L~~~~p~~i~-~~l~-~l~p~LL~~Ls 330 (666)
++..+..+. .+.|++.++...+.. ..+..+..|..+- ..+..+.+-.++=+. ..-+ +-+..|+.+|.
T Consensus 171 lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~ 250 (371)
T PF14664_consen 171 LLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR 250 (371)
T ss_pred HHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc
Confidence 666666542 357788888777766 2222222344444 445555554433321 1222 56778999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 005975 331 DPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 331 D~s~eVv~~~l~lLa~Is 348 (666)
-+.+++++..+.++-.+=
T Consensus 251 ~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 251 LPNPEIRKAILDLLFDLL 268 (371)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887765
No 172
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=1.6 Score=48.06 Aligned_cols=127 Identities=13% Similarity=0.171 Sum_probs=99.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChH
Q 005975 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG 278 (666)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~ 278 (666)
.-|+.++.+.+..+|..|+.-+...+.--+..+..++-.+++.+.+...|.+..+|...-+.++.++-......-+..+.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 34566778888999999999999888877777777888999999999999999999999888877554332211233345
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHH
Q 005975 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (666)
Q Consensus 279 ~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~L 325 (666)
-+++.+...+.+..++.|+-++..+..+++.||+.+..+...+++..
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~ 187 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENF 187 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 55666777777888999999999999999999998887766654444
No 173
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.66 E-value=22 Score=38.37 Aligned_cols=156 Identities=16% Similarity=0.212 Sum_probs=93.0
Q ss_pred HhhhHHHHHHhh----cCCCHHHHHH-HHHHHHHhhcCCchhhhhchHHHHHHHH----HhcCC---CChhHHHHHHHHH
Q 005975 112 IEEFIPLLRERM----NVLNPYVRQF-LVGWITVLDSVPDIDMLGFLPDFLDGLF----NMLSD---SSHEIRQQADSAL 179 (666)
Q Consensus 112 L~~fIPlL~eri----~~~np~vR~~-alswL~~L~svp~~~Li~yLp~fL~gLf----~lLsD---~~~eVR~~A~~~L 179 (666)
.+.|+|++.+.+ ....|..|.- +++.+..+....+..+.+++|.+++.+| .|+.+ ..|+.|..=-+.|
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL 144 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLL 144 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHH
Confidence 344555555533 1233444432 3344444444444455667777777776 56654 4588998766666
Q ss_pred HHHHHHhhc----CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc--------ccccchHhHHHHHhhhhc
Q 005975 180 WEFLQEIKN----SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD--------QLVPYYADILGAILPCIS 247 (666)
Q Consensus 180 ~~fL~eI~~----~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~--------~l~pylp~lL~~LL~~Ls 247 (666)
..+.+.... -|.-.+..+++.++..+++++.++..+++..+.++++-... -+..|+=.++.-++..+.
T Consensus 145 ~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 145 RAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654311 12235788999999999999999999999988887764221 123455667777777777
Q ss_pred CCc--HHHHHHHHHHHHHHHHhh
Q 005975 248 DKE--EKIRVVARETNEELRAIK 268 (666)
Q Consensus 248 d~~--~eIR~~A~~~n~~L~~~i 268 (666)
|+. ...+..+ .....+...+
T Consensus 225 D~~Hk~gf~~q~-~iL~~Lf~~v 246 (319)
T PF08767_consen 225 DSDHKSGFKLQS-QILSNLFRLV 246 (319)
T ss_dssp STT-GGGHHHHH-HHHHHHHHHH
T ss_pred CcccHHHHHHHH-HHHHHHHHHH
Confidence 765 2333333 4444555443
No 174
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.65 E-value=1.3 Score=39.07 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh
Q 005975 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (666)
Q Consensus 73 eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~ 151 (666)
+.|+...+.+.|+.+-||..| ..|.++++.-. ...-.++.++..+.+.+.+.||+|=..++..+..+...
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~------- 73 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR------- 73 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH-------
Confidence 345566677799999999988 67777766322 13456889999999999999999999999988866544
Q ss_pred chHH-HHHHHHHhcCCC
Q 005975 152 FLPD-FLDGLFNMLSDS 167 (666)
Q Consensus 152 yLp~-fL~gLf~lLsD~ 167 (666)
.|+ +++.|.+...|.
T Consensus 74 -~p~~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 74 -HPDEVLPILLDEYADP 89 (92)
T ss_pred -ChHHHHHHHHHHHhCc
Confidence 344 555555555544
No 175
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.64 E-value=4.1 Score=49.21 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=66.3
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
-++.+||.+..++.++++.||.-.+.-|..|.. -++..+=.+++=...-.+-|.+++||+-|.-+++.+|+ ++.|
T Consensus 1003 m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq---~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~--~~~P 1077 (1529)
T KOG0413|consen 1003 MTDRYIPMIAASLCDPSVIVRRQTIILLARLLQ---FGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ--SEEP 1077 (1529)
T ss_pred HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHh---hhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh--hcCc
Confidence 478899999999999999999888777776543 23333333333333345679999999999999999986 3456
Q ss_pred CCCHHHHHHHHHHh
Q 005975 191 SVDYGRMAEILVQR 204 (666)
Q Consensus 191 ~~d~~~iI~iLl~~ 204 (666)
..-+..+|+++...
T Consensus 1078 ~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1078 NFFPLNFVEYIIAL 1091 (1529)
T ss_pred cchHHHHHHHHHHH
Confidence 66788899988653
No 176
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=36 Score=40.37 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=134.9
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHh
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp-~~~Li~yLp~fL~gLf~lLs-D~~~eVR~~A~~~L~~fL~eI 186 (666)
.--+..-+..|-..+.+..+.+|+.+++.+-.+++.- .++-+.+ -.+.++..|. +.+-.||+.|..+|=.+++.
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~---h~d~Ii~sLkterDvSirrravDLLY~mcD~- 399 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKK---HQDTIINSLKTERDVSIRRRAVDLLYAMCDV- 399 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHH---HHHHHHHHhccccchHHHHHHHHHHHHHhch-
Confidence 3446777888888899999999999999999888763 3444333 2566676776 89999999998888888742
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC--------------CcHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD--------------KEEK 252 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd--------------~~~e 252 (666)
-+-..||.-|++.+.+.|+.+|.....=+.-+.+-...+.-=|..-+|..|--.=.+ .+++
T Consensus 400 -----~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNned 474 (938)
T KOG1077|consen 400 -----SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNED 474 (938)
T ss_pred -----hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchh
Confidence 245678888888888889888876544333334444444444444444433222112 2345
Q ss_pred HHHHHHHHHHHHHHhh--------------CCCCC------CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH
Q 005975 253 IRVVARETNEELRAIK--------------ADPAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 253 IR~~A~~~n~~L~~~i--------------~~~~~------~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~ 312 (666)
+..-|++..-+.+... ++.+. ...-......+.+.+...+..||.--|.=.+-++...|+
T Consensus 475 lq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PE 554 (938)
T KOG1077|consen 475 LQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPE 554 (938)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChh
Confidence 5555554332222110 11000 011123334566666666677777666666666666643
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 313 ~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+.+-..++|..=..+ .+.|+.+.+++-|..+.
T Consensus 555 -i~~~v~~vFq~~~n~---~D~ElQqRa~EYLql~k 586 (938)
T KOG1077|consen 555 -IKSNVQKVFQLYSNL---IDVELQQRAVEYLQLSK 586 (938)
T ss_pred -hhHHHHHHHHhhccc---CCHHHHHHHHHHHHHHH
Confidence 333344444433222 56788888887654444
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.38 E-value=7.6 Score=45.57 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=77.3
Q ss_pred HhhcCCchhHHHHH-HHHHHHHHHhhccc-----ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005975 80 KLSADSDANVQSAA-HLLDRLVKDIVTES-----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (666)
Q Consensus 80 kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~-----~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL 153 (666)
+++.+..-..|.+- +.++.++.+..++. -...+..++.++.||+.+.+|++|.-++.-+.-+...+.. ...-=
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-~~~~r 384 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-TVGRR 384 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-ccchH
Confidence 34555555777766 77888887776643 1345899999999999999999999988766655544432 22234
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 154 p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
.++..-..+.+.|-+.-||+.|.+.+..++.
T Consensus 385 ~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 385 HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 5666777789999999999999999998885
No 178
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=3 Score=49.04 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=87.9
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005975 123 MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEIL 201 (666)
Q Consensus 123 i~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~-~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iL 201 (666)
+.+.|-+||..++..|..+..-. |+-+++...+|+++ |+-||-+|.-+|+-++..- -...-|+.|
T Consensus 564 VsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt------G~~eAi~lL 629 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT------GLKEAINLL 629 (929)
T ss_pred ccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC------CcHHHHHHH
Confidence 56788899999998888654322 34455566688886 7889999988888888532 334555665
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHH
Q 005975 202 VQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (666)
Q Consensus 202 l~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eI 253 (666)
-..+.++..++|+-|+-.+.-+.-...+.+.|-...+-..+.+-+.+.+++.
T Consensus 630 epl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 630 EPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 5566788899999999888766666777888888899999999888887653
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.21 E-value=21 Score=40.26 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=76.7
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHH-----h
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSAD--SDANVQSAAHLLDRLVKD-----I 103 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~kl~~D--~d~~Vr~gA~~LdrLlKD-----I 103 (666)
....|.++.+..+|.-+...|+..+..++..... .-....+.+++-|+..+.. +...+.-|+.+|..+++- .
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH
Confidence 3456667777778888999988888777532111 1111223345566655543 233333444666665541 1
Q ss_pred hcccccccHhhhHHHHHHhhcCCCHHHHHHH--HHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChh-HHHHHHHHHH
Q 005975 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFL--VGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE-IRQQADSALW 180 (666)
Q Consensus 104 v~e~~~f~L~~fIPlL~eri~~~np~vR~~a--lswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~e-VR~~A~~~L~ 180 (666)
.-+.+ .++.+++.|... ..+.+.-|.+ |-|+-.+..- ..+...+ .++++.|.+++.++.+| |-+.+..+|.
T Consensus 181 f~~~~--~v~~L~~~L~~~--~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~ 254 (429)
T cd00256 181 FVLAD--GVPTLVKLLSNA--TLGFQLQYQSIFCIWLLTFNPH-AAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFR 254 (429)
T ss_pred HHHcc--CHHHHHHHHhhc--cccHHHHHHHHHHHHHHhccHH-HHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11111 344444444321 1244666554 4555544432 2222222 56788888888776554 4444456666
Q ss_pred HHHH
Q 005975 181 EFLQ 184 (666)
Q Consensus 181 ~fL~ 184 (666)
.++.
T Consensus 255 Nll~ 258 (429)
T cd00256 255 NLIS 258 (429)
T ss_pred HHhh
Confidence 6665
No 180
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=91.17 E-value=2.5 Score=48.63 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=97.0
Q ss_pred HhhhhhHHHHHhhcCCC--CHHHHHHHHHHH---HHHHHHhcchhh-hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 005975 28 TILQQIVPPVLNSFSDQ--DSRVRYYACEAL---YNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~--d~rVR~~A~eaL---~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlK 101 (666)
...+.++.-+..|+.++ +++.|..+.+-+ ..+.+.+...++ ..-+-|+..++++.+++..
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~-------------- 380 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSS-------------- 380 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccc--------------
Confidence 35577778888888777 778888777766 455444433322 2223444444444421100
Q ss_pred HhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005975 102 DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (666)
Q Consensus 102 DIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~ 181 (666)
+.-...+...|.++-+.|..+..-.+.-+..- -+++.-||+-+.+..+|||...++||..
T Consensus 381 -------------------~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALss 440 (501)
T PF13001_consen 381 -------------------QSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSS 440 (501)
T ss_pred -------------------cCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 01122344566666666666655333222111 4567777888899999999999999999
Q ss_pred HHHHhhcCCC---CCHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q 005975 182 FLQEIKNSPS---VDYGRMAEILV-QRAASPDEFTRLTAITWINEF 223 (666)
Q Consensus 182 fL~eI~~~~~---~d~~~iI~iLl-~~~~s~d~~irl~Al~WL~~~ 223 (666)
++..++..+. .........++ ....+....+|..|+.|....
T Consensus 441 l~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 441 LAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 9998876554 11222333333 344455567899999999853
No 181
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.02 E-value=32 Score=38.94 Aligned_cols=301 Identities=16% Similarity=0.192 Sum_probs=126.9
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh---cCCc--hhHHHHH-HHHHHH
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS---ADSD--ANVQSAA-HLLDRL 99 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~---~D~d--~~Vr~gA-~~LdrL 99 (666)
++++.+.++..+++.+.-+++.--.|...++..+.-.+++.+.++...+++.|...+ +++. |.----- |.++.+
T Consensus 20 i~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~l 99 (435)
T PF03378_consen 20 IQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGAL 99 (435)
T ss_dssp TTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Confidence 344555555555555533332223334444444444445555555555555444322 2221 1111111 344444
Q ss_pred HHHhhcccc----cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHH-hcCCCChhHHH
Q 005975 100 VKDIVTESD----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFN-MLSDSSHEIRQ 173 (666)
Q Consensus 100 lKDIv~e~~----~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~-lLsD~~~eVR~ 173 (666)
++-...... .| -+.+.|.+..-+...-.+.--++.+-+..+.. -++..+-+..-.+++.|.. .+.+....|-
T Consensus 100 ir~~~~~~~~~v~~~-E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP- 177 (435)
T PF03378_consen 100 IRFVCEADPEAVSQF-EEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP- 177 (435)
T ss_dssp HHHS-GGGHH---HH-HHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH-
T ss_pred HHhccCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC-
Confidence 442221110 11 33444444444432211111222233333333 3323444444445555442 3334444453
Q ss_pred HHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHH-hcCcccccchHhHHHHHhhhhcCC
Q 005975 174 QADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVK-LGGDQLVPYYADILGAILPCISDK 249 (666)
Q Consensus 174 ~A~~~L~~fL~eI~~~~--~~d~~~iI~iLl~~~~s~d-~~irl~Al~WL~~~i~-l~~~~l~pylp~lL~~LL~~Lsd~ 249 (666)
+...+|..+++.-.... .-+++.+..+.-+.+.++. +.. +..-+..++. ++++.+-||++.|+..++.-|..+
T Consensus 178 alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~---gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 178 ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY---GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH---HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 33355666665443321 1356777777766666653 333 3344444444 455678999999999999988744
Q ss_pred c-HHHHHHHHHHH---------HHHHHhhCCCCCCCChHhHHH-HHHHhcC--CCcHHHHHHHHHHHHHHHhh--ChHHH
Q 005975 250 E-EKIRVVARETN---------EELRAIKADPADGFDVGPILS-IATRQLS--SEWEATRIEALHWISTLLNR--HRTEV 314 (666)
Q Consensus 250 ~-~eIR~~A~~~n---------~~L~~~i~~~~~~~dl~~il~-~L~~~L~--~~~~~tR~aaL~WL~~L~~~--~p~~i 314 (666)
. +.......... ..+.+.+..-..++ +..+++ +....+. ....+.|++++--...+.+. .+++.
T Consensus 255 kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~gl-F~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~ 333 (435)
T PF03378_consen 255 KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGL-FGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEY 333 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTH-HHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCc-HHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHH
Confidence 2 22222111111 12233332211121 233332 1122221 12345566666555555542 12333
Q ss_pred hhhhHHHHHHHHHhcCCC
Q 005975 315 LHFLNDIFDTLLKALSDP 332 (666)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~ 332 (666)
......++..+++.+..+
T Consensus 334 ~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 334 SQLWPPLLEALLKLLERP 351 (435)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455666667777766543
No 182
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=3.8 Score=43.77 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=96.7
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
.+-+..++..|++.+..+-+.|-.+||..+..|.......+..-...+.-.|..-.++...=|++.| .+|.+.++
T Consensus 124 ~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~---- 199 (334)
T KOG2933|consen 124 NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN---- 199 (334)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh----
Confidence 4567778899999999999999999999999988766666655555566666655555566788888 45555443
Q ss_pred ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP---DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp---~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
...-..++|.|..+....+|.+|.+++-+.......- +. ...+.-+..+.+-.=++|.-+++|.+|...+...
T Consensus 200 ---~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~-~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 200 ---HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPV-LLQGSCDLSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred ---ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccch-hhHhHHHHHHHHHhhhcccccccccchhHHHHhH
Confidence 2334566666666677789999998876654333222 11 1223334444445556677777777764443333
No 183
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.99 E-value=26 Score=37.82 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=117.1
Q ss_pred HHHHHHHHhhcCC-chhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCchhh
Q 005975 73 QIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD-SVPDIDM 149 (666)
Q Consensus 73 eIfd~L~kl~~D~-d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~-svp~~~L 149 (666)
.+...|..++.-. ...|-.-| +..+.+.+-|..+.=..++.-+.|-|...+....-.||-.++.-+.... ..+. .+
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L 132 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-AL 132 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HH
Confidence 4444555544322 23444445 5555555545444334567888898999888888899999999888554 5555 89
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG- 228 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~- 228 (666)
.+.++.++-+|+--+.|.+.|+-..+.+.++.+-..+.. ..+...+-.++. ..+..|.-|+.|+..-..-..
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~------~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~ 205 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD------KYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQN 205 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh------hHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999998876644 233343333333 467789999999975332211
Q ss_pred ----------ccccc-chHhHHHHHhhhhcCCcHHHHHHH
Q 005975 229 ----------DQLVP-YYADILGAILPCISDKEEKIRVVA 257 (666)
Q Consensus 229 ----------~~l~p-ylp~lL~~LL~~Lsd~~~eIR~~A 257 (666)
..+++ --.-++.++..++.|++.=|+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~ 245 (307)
T PF04118_consen 206 DELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGF 245 (307)
T ss_pred cccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHH
Confidence 11222 233345677777777755544433
No 184
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.73 E-value=4.1 Score=44.47 Aligned_cols=144 Identities=18% Similarity=0.325 Sum_probs=95.3
Q ss_pred chhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCC-------CHHHHHHHHHH
Q 005975 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-------NPYVRQFLVGW 137 (666)
Q Consensus 65 ~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~-------np~vR~~alsw 137 (666)
.+...||.+|..++.. .+...|..| |.. +-++. .+..++|.+..+|... |-..=..++.-
T Consensus 174 ~Elq~yf~~It~a~~~----~~~~~r~~a--L~s----L~tD~---gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~ 240 (343)
T cd08050 174 KELQLYFEEITEALVG----SNEEKRREA--LQS----LRTDP---GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRM 240 (343)
T ss_pred HHHHHHHHHHHHHHhC----CCHHHHHHH--HHH----hccCC---CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 3555788888777643 344444444 333 33333 4777777777777532 55556667788
Q ss_pred HHHhhcCCchhhhhchHHHHHHHHHhc----------CCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCC
Q 005975 138 ITVLDSVPDIDMLGFLPDFLDGLFNML----------SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (666)
Q Consensus 138 L~~L~svp~~~Li~yLp~fL~gLf~lL----------sD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s 207 (666)
+..|..-|...+-.|+..+++.+..++ .|.+-.+|..|..+|..+++.+.....-=.+.++..+.+.+.+
T Consensus 241 v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 241 VRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 888899999999999999999998766 2334489999999999999877553211136677777777766
Q ss_pred CC-HH-HHHHHHHHHH
Q 005975 208 PD-EF-TRLTAITWIN 221 (666)
Q Consensus 208 ~d-~~-irl~Al~WL~ 221 (666)
+. +. ...-|+.-+.
T Consensus 321 ~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 321 PKKPLTTHYGAIVGLS 336 (343)
T ss_pred CCCCcchhhHHHHHHH
Confidence 54 22 2444544443
No 185
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=90.64 E-value=68 Score=43.50 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=96.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHH-HHhcc----hhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh-hcc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIA-KVVRG----DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-VTE 106 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~-Kv~r~----~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDI-v~e 106 (666)
........+.+....+|.-|...+.+-+ +..+. +...+++.+-..++.+..+.+.+.+-||.....++.-+ .++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ 85 (2341)
T KOG0891|consen 6 VLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTE 85 (2341)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcc
Confidence 3445556667777777777766666654 32332 22356777777888888999998887774333322222 343
Q ss_pred cccccHhhhHHHHHHhhc--------------------------CCCHHHHHHHHHHHH---------------HhhcCC
Q 005975 107 SDQFSIEEFIPLLRERMN--------------------------VLNPYVRQFLVGWIT---------------VLDSVP 145 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~--------------------------~~np~vR~~alswL~---------------~L~svp 145 (666)
.+.+....+--.++-.+. .-+.+.++-+++|.. -+..-.
T Consensus 86 ~~~~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~ 165 (2341)
T KOG0891|consen 86 HDRKNISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNV 165 (2341)
T ss_pred cccchhHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcC
Confidence 322222222222221111 233577788888881 112222
Q ss_pred chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 146 DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 146 ~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
+.-+.+|++.|+++++.-..|+++.+|..||.++...+-....
T Consensus 166 P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 166 PTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred cHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhh
Confidence 2336899999999999999999999999999999998866543
No 186
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.51 E-value=5.6 Score=43.50 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=88.8
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC-------CHHHHHHHHHH
Q 005975 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-------DEFTRLTAITW 219 (666)
Q Consensus 147 ~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~-------d~~irl~Al~W 219 (666)
.++..|+.++.. .+.+.+..-|..| ++.+.. +..+..++|+++..+.+. +-..-...+..
T Consensus 174 ~Elq~yf~~It~----a~~~~~~~~r~~a-------L~sL~t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~ 240 (343)
T cd08050 174 KELQLYFEEITE----ALVGSNEEKRREA-------LQSLRT--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRM 240 (343)
T ss_pred HHHHHHHHHHHH----HHhCCCHHHHHHH-------HHHhcc--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 344445444444 4445666566554 455544 345667777777765433 22222233445
Q ss_pred HHHHHHhcCcccccchHhHHHHHhhhhcC----------CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC
Q 005975 220 INEFVKLGGDQLVPYYADILGAILPCISD----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 289 (666)
Q Consensus 220 L~~~i~l~~~~l~pylp~lL~~LL~~Lsd----------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~ 289 (666)
+..++.=..-.+-||+..++|.++.|+.. .+-.+|+.|++....+.+-......++ ...+...+.+.|.
T Consensus 241 v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ri~~tl~k~l~ 319 (343)
T cd08050 241 VRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QPRITRTLLKALL 319 (343)
T ss_pred HHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHc
Confidence 55555556667899999999999999943 234799999998887776654422221 3577778888777
Q ss_pred CCc--HHHHHHHHHHHHHH
Q 005975 290 SEW--EATRIEALHWISTL 306 (666)
Q Consensus 290 ~~~--~~tR~aaL~WL~~L 306 (666)
++. ..+...|+.-|..+
T Consensus 320 d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCCCcchhhHHHHHHHHh
Confidence 544 34477776655554
No 187
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.45 E-value=6.4 Score=42.18 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=96.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc---cccch----HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCC
Q 005975 200 ILVQRAASPDEFTRLTAITWINEFVKLGGDQ---LVPYY----ADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 200 iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~---l~pyl----p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
.++..+ ++++++....+.-+.+++...+.. |..+. +.....+++.+..+|.-|...|......++.......
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 567888888888888888876632 11111 1245566777777889999999888877765543322
Q ss_pred CC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc-----CCCCHHH-----HHH
Q 005975 273 DG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-----SDPSDEV-----VLL 339 (666)
Q Consensus 273 ~~---~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L-----sD~s~eV-----v~~ 339 (666)
.. -.+..+++.+..++.+++...+..|+.-+..++..-.-...=.-.+.++.+.+.| .+....+ ...
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 21 1234555667776666666667888888888876543332222266677777777 2332222 123
Q ss_pred HHHHHHHHhh-----ccchHHHHHHHHHhhccccchhhhhHHHH-HHHHHhccCCh
Q 005975 340 VLEVHACIAK-----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLDA 389 (666)
Q Consensus 340 ~l~lLa~Is~-----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~-IIR~Lc~~L~~ 389 (666)
++|+|+=-.+ ...+ ++..|.+..+...|.-=.|..+ ++|+|+..-+.
T Consensus 221 ~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 4454432111 1222 6666666666655533445554 67777665553
No 188
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=13 Score=44.64 Aligned_cols=202 Identities=12% Similarity=0.066 Sum_probs=114.0
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCC
Q 005975 117 PLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSV 192 (666)
Q Consensus 117 PlL~eri~~~-np~vR~~alswL~~L~svp~~~Li~--yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~~~ 192 (666)
..|++-++.. ||....-++.=+-.+..+...+-+. -+..+.+.|.++|.+ .+.|+-..||.||.-+++..+.+..+
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3344444433 6655444443333444444444433 345788899999988 57899999999999999999875433
Q ss_pred CH-HHHHHHHHHhcCCCCH----------------------------------------HHHHHHHHHHHHHHHhcCccc
Q 005975 193 DY-GRMAEILVQRAASPDE----------------------------------------FTRLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 193 d~-~~iI~iLl~~~~s~d~----------------------------------------~irl~Al~WL~~~i~l~~~~l 231 (666)
-. ...||+++..+..-++ -+|+.|+....++|+--+.+=
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 21 2244444444433221 134445555555554434444
Q ss_pred ccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC---hHhHHHHHHHhcCCC----cHHHHHHHHHHHH
Q 005975 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSE----WEATRIEALHWIS 304 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L~~~----~~~tR~aaL~WL~ 304 (666)
..|+-+.+|.|-+.+++.+...-+.++-|...+.+.....++.+| =..+++-..+.+.-. +..+.-..+..+.
T Consensus 330 f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 330 FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHH
Confidence 668889999999999999877666666555444433322222211 023333333333211 1234555666677
Q ss_pred HHHhhChHHHhhhh
Q 005975 305 TLLNRHRTEVLHFL 318 (666)
Q Consensus 305 ~L~~~~p~~i~~~l 318 (666)
.+...||......+
T Consensus 410 ~msS~~pl~~~tl~ 423 (1051)
T KOG0168|consen 410 LMSSGSPLLFRTLL 423 (1051)
T ss_pred HHccCChHHHHHHH
Confidence 77777776655433
No 189
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.13 E-value=25 Score=39.74 Aligned_cols=221 Identities=8% Similarity=0.151 Sum_probs=115.1
Q ss_pred CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHhcCCC-CHHHHHHHHH
Q 005975 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD----YGRMAEILVQRAASP-DEFTRLTAIT 218 (666)
Q Consensus 144 vp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d----~~~iI~iLl~~~~s~-d~~irl~Al~ 218 (666)
.+..++.++.+.++..||+.+.-+...=-.-.-+|+.+.+...+...... ++.++.++..-+++| +|.--....+
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 34567888999999999988843221100112245555555544432222 344555555555655 3444444444
Q ss_pred HHHHHHHh----cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHH
Q 005975 219 WINEFVKL----GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA 294 (666)
Q Consensus 219 WL~~~i~l----~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~ 294 (666)
-+..++.. .++.+..|-+.++|.+...|..+..|.-.-+-.....+++.-...+-.-.|.++++.|..-. -|+
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---lWe 171 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---LWE 171 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG---GGG
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc---hhc
Confidence 44444443 23334456666667666666644333322233333344444331111123566666554322 132
Q ss_pred H--HH-HHHHHHHHHHhhChHHHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHh
Q 005975 295 T--RI-EALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVH 363 (666)
Q Consensus 295 t--R~-aaL~WL~~L~~~~p~~i~--~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~------~~~~F~~fm~~LL~ 363 (666)
. -+ +...-|.++.++.|..+. +++..++...=+.++.+..+ ..+.++|..|-. =++|++.++.-++.
T Consensus 172 ~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 172 RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT 249 (435)
T ss_dssp STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 2 22 333577788888888876 67777777666666666544 346677777663 26799999999999
Q ss_pred hccccc
Q 005975 364 NFRVDN 369 (666)
Q Consensus 364 lf~~d~ 369 (666)
++.+.+
T Consensus 250 RLq~sk 255 (435)
T PF03378_consen 250 RLQSSK 255 (435)
T ss_dssp HHHHC-
T ss_pred HHhhCC
Confidence 997653
No 190
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.03 E-value=5.9 Score=37.08 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-H-HHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHhhcC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-P-DFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL-p-~fL~gLf~lLsD---~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
+-.|..|+...||.+...++.-+..+.+-.+..+...+ . +|+..|.+++.+ .+++||+.+.+.+...-..++..
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44567788889999999999999988888877664333 3 688888888876 47899999999999988888653
No 191
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.01 E-value=40 Score=38.39 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhh--cCCchhHHHHHHHHHHHHH--HhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005975 70 FFNQIFDALCKLS--ADSDANVQSAAHLLDRLVK--DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP 145 (666)
Q Consensus 70 ~f~eIfd~L~kl~--~D~d~~Vr~gA~~LdrLlK--DIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp 145 (666)
....+++.+|.++ ++.+..++..-..+|.++. ++. .-++..+|-.|..-.... ...+.+-..+++|.+-.
T Consensus 173 ~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP----~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~ 246 (464)
T PF11864_consen 173 EISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP----SESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSH 246 (464)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC----hHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCc
Confidence 3456666666664 2333444444466777655 222 234667776666553322 44455556677666433
Q ss_pred -chhhhhchHHHHHHHHHhc--CCC----ChhHHHHHHHHHHHHHHHh--hcCCCCCHHH--HHHHHHHhcCCCCHHHHH
Q 005975 146 -DIDMLGFLPDFLDGLFNML--SDS----SHEIRQQADSALWEFLQEI--KNSPSVDYGR--MAEILVQRAASPDEFTRL 214 (666)
Q Consensus 146 -~~~Li~yLp~fL~gLf~lL--sD~----~~eVR~~A~~~L~~fL~eI--~~~~~~d~~~--iI~iLl~~~~s~d~~irl 214 (666)
+... +..|+.+| .|+ +..+-++|...++.++-.- +..+.+.+.. +++-+...++..++.+-.
T Consensus 247 ~g~~~-------i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~ 319 (464)
T PF11864_consen 247 LGHSA-------IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDY 319 (464)
T ss_pred cHHHH-------HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehH
Confidence 3334 44455555 332 2334456778888888766 3334555666 999999999988876666
Q ss_pred HHHHHHHHHH
Q 005975 215 TAITWINEFV 224 (666)
Q Consensus 215 ~Al~WL~~~i 224 (666)
..+.-+..++
T Consensus 320 eIl~~i~~ll 329 (464)
T PF11864_consen 320 EILLLINRLL 329 (464)
T ss_pred HHHHHHHHHH
Confidence 6666666666
No 192
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=12 Score=47.45 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=126.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchhh-hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 005975 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDM-LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMA 198 (666)
Q Consensus 120 ~eri~~~np~vR~~alswL~~L~svp~~~L-i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI 198 (666)
...+.-.|+.+|.-++.-+..+.+--+.+- ...+|....-..++..|.+++||.++...+..++..+++.-...+..+|
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 344455789999988888887776655444 4458888888889999999999999999999999999887778889999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhc--CcccccchHhHHHHHhhhhcCC----cHHHHHHHH------------HH
Q 005975 199 EILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCISDK----EEKIRVVAR------------ET 260 (666)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~~~i~l~--~~~l~pylp~lL~~LL~~Lsd~----~~eIR~~A~------------~~ 260 (666)
++.+-..-+.+..+...|-.-....-.-. +....-+-|.+.+.+...+... -.+.|..+. .+
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99988888777766655544332211100 0111122333333333332111 111111111 11
Q ss_pred HHHHHHhhCCCCCC--CC-hHhHH------HHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC
Q 005975 261 NEELRAIKADPADG--FD-VGPIL------SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (666)
Q Consensus 261 n~~L~~~i~~~~~~--~d-l~~il------~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (666)
.-.+.+.....+.. ++ ..+-. +..-..+.+..+..|.+.++-+..+.+.-+.-+.+.-...+...+....|
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~ 286 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSID 286 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHcccc
Confidence 11222222211111 11 11211 12334556778889999999999988888777444444444444444444
Q ss_pred CCH
Q 005975 332 PSD 334 (666)
Q Consensus 332 ~s~ 334 (666)
+.+
T Consensus 287 ~~d 289 (1312)
T KOG0803|consen 287 SLD 289 (1312)
T ss_pred ccc
Confidence 444
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=6.3 Score=45.22 Aligned_cols=161 Identities=20% Similarity=0.173 Sum_probs=108.9
Q ss_pred HHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005975 72 NQIFDALC-KLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDM 149 (666)
Q Consensus 72 ~eIfd~L~-kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~er-i~~~np~vR~~alswL~~L~svp~~~L 149 (666)
.|.+|.+. ++..|.|+..|-++.. .+.-..+ +.-.+ ..+..++.. +.+.|.+||..++-.+..++--.
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~f--s~alAy~---GTgn~-~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---- 583 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVF--SLALAYV---GTGNL-GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---- 583 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHH--HHHHHHh---cCCcc-hhHhhhheeecccCchHHHHHHHHheeeeEecC----
Confidence 45666665 5667777777765521 0111111 11112 223333333 67889999999998888554221
Q ss_pred hhchHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 150 LGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~-~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
++.+.+...+|+|+ |+-||-++.-+|+-++..- ....-+++|-.-+.+++.++|+.|+-....+.....
T Consensus 584 ----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~------G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 584 ----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT------GDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC------ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 34466677788886 6789999888888888522 234455666666788999999999999888888888
Q ss_pred cccccchHhHHHHHhhhhcCCcHH
Q 005975 229 DQLVPYYADILGAILPCISDKEEK 252 (666)
Q Consensus 229 ~~l~pylp~lL~~LL~~Lsd~~~e 252 (666)
+.+.|-..+|..-+..-+.+..++
T Consensus 654 ~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 654 PELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cccChhHHHHHHHHHHHHhhhhHh
Confidence 899999999999888888877654
No 194
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.75 E-value=2 Score=41.71 Aligned_cols=113 Identities=13% Similarity=0.199 Sum_probs=72.9
Q ss_pred hHhHHHHHhhhhcC-CcHHHHHHHHHHHHHH-------HHhhCCC---------CC-----------------CCChHhH
Q 005975 235 YADILGAILPCISD-KEEKIRVVARETNEEL-------RAIKADP---------AD-----------------GFDVGPI 280 (666)
Q Consensus 235 lp~lL~~LL~~Lsd-~~~eIR~~A~~~n~~L-------~~~i~~~---------~~-----------------~~dl~~i 280 (666)
.|.+++.++..+.- ...++|..|-++.+.+ .+.+... .+ +....-+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 69999999999984 4689999999988654 1211100 00 0011234
Q ss_pred HHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005975 281 LSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (666)
Q Consensus 281 l~~L~~~L~~~~-~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~I 347 (666)
++.|...|.|+. ..-..++++.+..+....+.+-.+|+++++|.++..+....+..++--++-|+.+
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456666666544 2335567777777776666667888888888888888766666666555555443
No 195
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=45 Score=38.51 Aligned_cols=326 Identities=17% Similarity=0.250 Sum_probs=175.1
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHH-------------------HHH
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQ-------------------SAA 93 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr-------------------~gA 93 (666)
-+-..++.+.|..+.+|-.-+-|+.+++=... .|-|.|++.+-++.+++.. |. .||
T Consensus 63 sl~thl~~l~~~~~~i~tQL~vavA~Lal~~~----~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a 137 (559)
T KOG2081|consen 63 SLITHLKELHDHPDVIRTQLAVAVAALALHMP----EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGA 137 (559)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHhH----hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhh
Confidence 33356677777766788777777777653222 2334466666655554433 22 122
Q ss_pred HHHHHHHHHhhcccccccHhhhHHHHHHhhcC--CC-----HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC
Q 005975 94 HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV--LN-----PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD 166 (666)
Q Consensus 94 ~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~--~n-----p~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD 166 (666)
.-.+.+.+++- ....+++-.+..++.. .+ ++|=.-.-||++ +.-.|...+....| +..-+|..++|
T Consensus 138 ~Rr~e~~~~l~-----~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~-~~~~~~d~v~a~~p-Li~l~F~sl~~ 210 (559)
T KOG2081|consen 138 NRRHEFIDELA-----AQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLR-LHVFPPDQVLASFP-LITLAFRSLSD 210 (559)
T ss_pred hhHHHHHHHHH-----HhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhh-hccCCHHHHHhhhH-HHHHHHHHccc
Confidence 22222333222 3355556666555543 22 455555667876 23333333333323 33445666653
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCC----------------------------------------------------C-CC
Q 005975 167 SSHEIRQQADSALWEFLQEIKNSP----------------------------------------------------S-VD 193 (666)
Q Consensus 167 ~~~eVR~~A~~~L~~fL~eI~~~~----------------------------------------------------~-~d 193 (666)
. +--..|.+|+..++..+.... . -+
T Consensus 211 ~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~ 288 (559)
T KOG2081|consen 211 D--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEE 288 (559)
T ss_pred c--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 2 334445555555555543210 0 02
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH-HHH--HHHHhc-----CcccccchHhHHHHHhhhhcCCc------------HHH
Q 005975 194 YGRMAEILVQRAASPDEFTRLTAIT-WIN--EFVKLG-----GDQLVPYYADILGAILPCISDKE------------EKI 253 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~Al~-WL~--~~i~l~-----~~~l~pylp~lL~~LL~~Lsd~~------------~eI 253 (666)
+-.+++.++-...+++.++-..... |.+ +.+... -..+.||.-+++..+.....++. .+.
T Consensus 289 ~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~f 368 (559)
T KOG2081|consen 289 FLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEF 368 (559)
T ss_pred chhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHH
Confidence 2334555555555555554433333 543 222221 12467889999999888877543 134
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC
Q 005975 254 RVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (666)
Q Consensus 254 R~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (666)
|....++.....-.++. ++.++.+...+. ...|+.-+|+|--+.+++...+ +.-+.++|.+++.+..
T Consensus 369 R~~v~dvl~Dv~~iigs-------~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~----~~e~~i~pevl~~i~n 437 (559)
T KOG2081|consen 369 RLKVGDVLKDVAFIIGS-------DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVS----PEENTIMPEVLKLICN 437 (559)
T ss_pred HHHHHHHHHHHHHHhCc-------HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCC----ccccchHHHHHHHHhC
Confidence 44444444444444443 344444444433 4579999999998888887764 4445566666666543
Q ss_pred --CCHHHHHHHHHHHHHHhh---ccc-hHHHHHHHHHhhccccchhhhhHHHHHHHHHhc
Q 005975 332 --PSDEVVLLVLEVHACIAK---DLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (666)
Q Consensus 332 --~s~eVv~~~l~lLa~Is~---~~~-~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~ 385 (666)
....++..++-+++++++ +.+ ..+.+..-+...+...+ +..-.+..++++|.
T Consensus 438 lp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 438 LPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 233488899999999993 444 44445444444443333 66667777777775
No 196
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.34 E-value=1.5 Score=38.60 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005975 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 157 L~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
++.....+.||.+-||..+-..|..+++.=. .+..+.+.++.+++..++++|+++=+.|+.-+..++...|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4556678899999999998887777775322 13457899999999999999999999999999888876654
No 197
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=12 Score=44.14 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=119.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc-ccchHhHH----HHHhhhhcCCcHHHHHHHHHHH----HHHHHhhC
Q 005975 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADIL----GAILPCISDKEEKIRVVARETN----EELRAIKA 269 (666)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l-~pylp~lL----~~LL~~Lsd~~~eIR~~A~~~n----~~L~~~i~ 269 (666)
|+|...++.++..+|..|..-.-++--+-+++. ..=...++ -.+.+.|.|+.|.||..|.+-. ..+-..+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888999999999886655554433333 22233444 3677788999999999886532 22333332
Q ss_pred CCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 270 DPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
. + -+-+++..++..+ .+...++|.+..+-|-+++..- .-.+.++.++|++=.+|-|+++.||-...++|.+|-
T Consensus 257 ~--~--i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 P--T--ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred H--H--HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1 0 0123333333333 2455789999988877776542 123456677887778889999999999999999998
Q ss_pred hc--cchHHH-HHHHHHhhccccchhhhhHHHHHHHHHhccCC-hHHHHHHHHH
Q 005975 349 KD--LQHFRQ-LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD-AERVYRELST 398 (666)
Q Consensus 349 ~~--~~~F~~-fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~-~E~Iy~~la~ 398 (666)
.. -++|+= -|..++..+..|..-.-.|-.--|-+.|.=.+ +|.+|+.=..
T Consensus 331 ~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~ 384 (1005)
T KOG1949|consen 331 AVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCV 384 (1005)
T ss_pred hhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Confidence 42 122321 47778888877766655554444555554332 2444444333
No 198
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.24 E-value=1.5 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.3
Q ss_pred hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC
Q 005975 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 235 lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (666)
-.+|+|.+.+...|.+..+|..|.++...++....+
T Consensus 484 a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 457888888888999999999999988877665544
No 199
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=89.23 E-value=3.6 Score=37.76 Aligned_cols=97 Identities=24% Similarity=0.232 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHH-HhccCC------hHHH
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR-LCVLLD------AERV 392 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~-Lc~~L~------~E~I 392 (666)
=.++.|++.|.|++++|+..|+++|.+.+..+.+.+.++.- +..-..|.++|..+.-+ |...-+ ..-|
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~-----~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v 82 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL-----RPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYV 82 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc-----CcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHH
Confidence 35778899999999999999999999999766666665532 11123344455543333 322211 1235
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHhcc
Q 005975 393 YRELSTILEGEADLDFACTMVQALNLILLT 422 (666)
Q Consensus 393 y~~la~iL~~~~dl~F~~~mVq~Ln~iLLT 422 (666)
-+.+-.|. +..+.++|..+=..+...+.+
T Consensus 83 ~~El~~W~-~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 83 EKELDKWF-ESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred HHHHHHHH-HcccHHHHHHHHHHHHHHHhc
Confidence 56666666 347788887777666655544
No 200
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=56 Score=38.85 Aligned_cols=391 Identities=17% Similarity=0.175 Sum_probs=202.4
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
++.+..++..|-+-+...|+-----|...+.||.. |+....+-++|-.-| . ..|+..-||.-| -+|=|+.+...
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~DI~KlL-v-S~~~~~~vkqkaALclL~L~r~sp- 180 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFADDIPKLL-V-SGSSMDYVKQKAALCLLRLFRKSP- 180 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhhhHHHH-h-CCcchHHHHHHHHHHHHHHHhcCc-
Confidence 44566677777777777776655555555555532 333334444443222 1 245556676555 56666666211
Q ss_pred ccccccHhhhHHHHHHhhcCCCHHHHHH----------------------HHHHHHHhhcCCchhhhhch------HHHH
Q 005975 106 ESDQFSIEEFIPLLRERMNVLNPYVRQF----------------------LVGWITVLDSVPDIDMLGFL------PDFL 157 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~np~vR~~----------------------alswL~~L~svp~~~Li~yL------p~fL 157 (666)
+.+.....+..+...+.+.+-.+-.. +++-+..++...+.++.+|. |-+-
T Consensus 181 --Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 181 --DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred --cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 11222223333333333333222222 34444444444444433322 1111
Q ss_pred HHHHHhc----CCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC--HHHHHHH--HHHHHHHHHhcCc
Q 005975 158 DGLFNML----SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTRLTA--ITWINEFVKLGGD 229 (666)
Q Consensus 158 ~gLf~lL----sD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d--~~irl~A--l~WL~~~i~l~~~ 229 (666)
-.++++| .-.++.+|....++|++++....+.| ++++ ......| .+.|.-.+.+.++
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~---------------~~k~vq~~na~naVLFeaI~l~~h~D~e 323 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP---------------KSKKVQHSNAKNAVLFEAISLAIHLDSE 323 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc---------------cccchHhhhhHHHHHHHHHHHHHHcCCc
Confidence 1122222 11234466655555555554332211 1222 1112211 2244444444443
Q ss_pred ccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHH---HHHHHhcC-CCcHHHHHHHHHHHHH
Q 005975 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPIL---SIATRQLS-SEWEATRIEALHWIST 305 (666)
Q Consensus 230 ~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il---~~L~~~L~-~~~~~tR~aaL~WL~~ 305 (666)
. ..+.+....+-..+++.+..||-.|-+..-.|... +...+++- +.+...|. ..+...|..|++.|.+
T Consensus 324 ~--~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss------~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 324 P--ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS------EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred H--HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc------cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 3 22577788888899999999999998876655433 11122222 23333444 5667889999999999
Q ss_pred HHhhChHHHhhhhHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHH
Q 005975 306 LLNRHRTEVLHFLNDIFDTLLKALSDPS----DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIR 381 (666)
Q Consensus 306 L~~~~p~~i~~~l~~l~p~LL~~LsD~s----~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR 381 (666)
+.+....+ .++..||.-|...+ +|++.++.-+=.+++.+-..|.+++-.|+..-.+-.. .-|+.
T Consensus 396 mcD~~Nak------~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs------deVW~ 463 (938)
T KOG1077|consen 396 MCDVSNAK------QIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS------DEVWY 463 (938)
T ss_pred HhchhhHH------HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc------HHHHH
Confidence 98875433 23333444443333 4445555445556666677888888888876553322 34677
Q ss_pred HHhcc-CChHHHHHHHHHhhccc-CChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHH
Q 005975 382 RLCVL-LDAERVYRELSTILEGE-ADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMA 459 (666)
Q Consensus 382 ~Lc~~-L~~E~Iy~~la~iL~~~-~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs 459 (666)
++|.. .|.|.+=+.-|+-+-+. ....--+.||..=.-|| -|+- +.+-+ -........|..|++-.--.+.+
T Consensus 464 RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiL---GEfg---~LIa~-~prss~~~qFsllh~K~~~~s~~ 536 (938)
T KOG1077|consen 464 RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYIL---GEFG---NLIAD-DPRSSPAVQFSLLHEKLHLCSPV 536 (938)
T ss_pred HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhh---hhhh---hhhcC-CCCCChHHHHHHHHHHhccCChh
Confidence 77766 46665544333332221 33445567777776665 2332 22222 11334578999999988777777
Q ss_pred HHHHHHH
Q 005975 460 IISLCLL 466 (666)
Q Consensus 460 ~lsLcll 466 (666)
|-+|-|=
T Consensus 537 tr~lLLt 543 (938)
T KOG1077|consen 537 TRALLLT 543 (938)
T ss_pred HHHHHHH
Confidence 7666543
No 201
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=2.8 Score=49.28 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=88.2
Q ss_pred hhhhhhHHHhh--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh-hcCCchhHHHHH-HH
Q 005975 20 ADLFFYSETIL--QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADSDANVQSAA-HL 95 (666)
Q Consensus 20 ~~~~~~~~~yl--~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl-~~D~d~~Vr~gA-~~ 95 (666)
.|+|....-|- +.--+-|-..++|+|+-.||... |.++-...|.. =|.++..|... ++|++-.||.+| .+
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm---~t~alAy~GTg---nnkair~lLh~aVsD~nDDVrRaAVia 578 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGM---YTLALAYVGTG---NNKAIRRLLHVAVSDVNDDVRRAAVIA 578 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhH---HHHHHHHhccC---chhhHHHhhcccccccchHHHHHHHHH
Confidence 45565555553 22334444555788888888753 33322111110 02334444433 567777777777 43
Q ss_pred HHHH-------HHH---hhccc-----------------ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005975 96 LDRL-------VKD---IVTES-----------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (666)
Q Consensus 96 LdrL-------lKD---Iv~e~-----------------~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~ 148 (666)
|.-. +-. ..+|+ +--.+..-|.+|-..+++++.+|||.++-.+..+.--....
T Consensus 579 lGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 579 LGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred heeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 3221 111 11121 12235566777777788999999999998888665555566
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHH
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
+-+....|-+.+.+.++|.+.|+-.
T Consensus 659 ~~pkv~~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred cCchHHHHHHHHHHHhhhhhhHHHH
Confidence 7788888999999999999887543
No 202
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=88.78 E-value=44 Score=37.26 Aligned_cols=253 Identities=18% Similarity=0.239 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005975 69 IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (666)
Q Consensus 69 ~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~ 148 (666)
++...+.+-+.+.+..+|-+-+-|+..+| ..|+-.|.+.|.+.||+-|.++=..+..+- +.
T Consensus 147 phLqlvye~~Lrf~~sp~~d~~vaK~yid---------------~~FvlkLLdLFdSEDpRERe~LKT~LhrIy---gK- 207 (457)
T KOG2085|consen 147 PHLQLVYEFLLRFLESPDFDPSVAKKYID---------------QKFVLKLLDLFDSEDPREREFLKTILHRIY---GK- 207 (457)
T ss_pred hHHHHHHHHHHHHHhCcccCHHHHHHHhh---------------HHHHHHHHHHhcCCChHHHHHHHHHHHHHH---HH-
Confidence 34445555566666655554443444433 357888999999999999998766554321 11
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCC---CC-HHHHHHHHHHHHHHH
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS---PD-EFTRLTAITWINEFV 224 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s---~d-~~irl~Al~WL~~~i 224 (666)
+..+.| -+|+.-.+.+=+|+-+- ..+..++++++++-..+.. |- ++.+.+-.. .++
T Consensus 208 fl~~r~---------------firk~iNNif~~FIyEt--e~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r---vLi 267 (457)
T KOG2085|consen 208 FLVHRP---------------FIRKSINNIFLRFIYET--ERHNGIAELLEILGSIINGFALPLKEEHKLFLVR---VLI 267 (457)
T ss_pred HhhhHH---------------HHHHhhcchhhhhcccc--cccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH---hhh
Confidence 222222 24444333333343332 2245567777776655543 22 555554333 333
Q ss_pred HhcCc-ccccc------------------hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCCh----HhHH
Q 005975 225 KLGGD-QLVPY------------------YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV----GPIL 281 (666)
Q Consensus 225 ~l~~~-~l~py------------------lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl----~~il 281 (666)
-+.+. .+--| .+.++.++++.---++-.-+-+.-...++.++.+.. ..+ .++.
T Consensus 268 pLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep----~eFqk~~~PLf 343 (457)
T KOG2085|consen 268 PLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEP----SEFQKIMVPLF 343 (457)
T ss_pred ccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCH----HHHHHHhHHHH
Confidence 33221 11111 233333444322211111111111122223332221 112 3444
Q ss_pred HHHHHhcCCCcHHHHHHHHH-HHHH-HHhhChHHHhhhhHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhh-ccchHHHH
Q 005975 282 SIATRQLSSEWEATRIEALH-WIST-LLNRHRTEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEVHACIAK-DLQHFRQL 357 (666)
Q Consensus 282 ~~L~~~L~~~~~~tR~aaL~-WL~~-L~~~~p~~i~~~l~~l~p~LL~~LsD-~s~eVv~~~l~lLa~Is~-~~~~F~~f 357 (666)
..+...++|++-++-+.||- |=.. +.....+...-.+|-+||+|.+.-+. =+..|+..++.++.-+.+ |...|+.
T Consensus 344 ~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee- 422 (457)
T KOG2085|consen 344 RQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE- 422 (457)
T ss_pred HHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-
Confidence 55667778888888887773 3221 11111222233556778888765432 246788899999999885 5555654
Q ss_pred HHHHHhhcccc
Q 005975 358 VVFLVHNFRVD 368 (666)
Q Consensus 358 m~~LL~lf~~d 368 (666)
+++.|+.+
T Consensus 423 ---c~~~y~~~ 430 (457)
T KOG2085|consen 423 ---CLALYKED 430 (457)
T ss_pred ---HHHHHHHH
Confidence 44555444
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.57 E-value=7.3 Score=47.64 Aligned_cols=106 Identities=24% Similarity=0.230 Sum_probs=65.7
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC------
Q 005975 119 LRERMNV-LNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP------ 190 (666)
Q Consensus 119 L~eri~~-~np~vR~~alswL~~L~svp~-~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~------ 190 (666)
=.+.+.+ +.|-.||++|-++..|=.-.+ .-...-=..-.+.|...++|+.+|||.+|.-+|+.|+.......
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~ 683 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV 683 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 3344445 468899999999987632111 11111112234667789999999999999999999998532110
Q ss_pred ---CCC-------HHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Q 005975 191 ---SVD-------YGRMAE----ILVQRAASPDEFTRLTAITWINEFV 224 (666)
Q Consensus 191 ---~~d-------~~~iI~----iLl~~~~s~d~~irl~Al~WL~~~i 224 (666)
.++ .++++. -++....+..+.+|.+....+.+++
T Consensus 684 ~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 684 VEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred hhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 011 344444 4455566666777777666666655
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.01 E-value=15 Score=45.11 Aligned_cols=226 Identities=18% Similarity=0.207 Sum_probs=132.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHH-HHHHHh--hcCCchhhh-----hchHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHH
Q 005975 115 FIPLLRERMNVLNPYVRQFLV-GWITVL--DSVPDIDML-----GFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQE 185 (666)
Q Consensus 115 fIPlL~eri~~~np~vR~~al-swL~~L--~svp~~~Li-----~yLp~fL~gLf~lLsD~-~~eVR~~A~~~L~~fL~e 185 (666)
+-|.++..+++.-+..|..++ -|-..| ++.+..|++ .|+=.+++. ++. ++|=|.+|.-.|..++..
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~-----~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP-----SQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC-----cCCCCHHHHHHHHHHHHHHHcc
Confidence 568889999998899998766 576644 444444443 233333332 122 358888888888887765
Q ss_pred hhcCCCCC-HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHh------cCcccccchHhHHHHHhhhhcCCcHHHHHHH
Q 005975 186 IKNSPSVD-YGRMAEILVQRAASP-DEFTRLTAITWINEFVKL------GGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (666)
Q Consensus 186 I~~~~~~d-~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~i~l------~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A 257 (666)
++....-- -+++|.+.+.++.++ ++..|+-++--+..+=+- .|... .--.-+...++|+.+|+|.+|
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~-----~AhekL~~~LsD~vpEVRaAA 662 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD-----NAHEKLILLLSDPVPEVRAAA 662 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc-----cHHHHHHHHhcCccHHHHHHH
Confidence 54322111 256888999999985 677877544433322221 11111 112345667889999999999
Q ss_pred HHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 005975 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv 337 (666)
.=+.++|++...+ ++++=..++.+++.-+.+.+++. .......-.++..++|.++.|+
T Consensus 663 VFALgtfl~~~~d-----~fde~~~~~~~~~~l~~~~~~~E-----------------~~i~~~~~~ll~~vsdgsplvr 720 (1387)
T KOG1517|consen 663 VFALGTFLSNGSD-----NFDEQTLVVEEEIDLDDERTSIE-----------------DLIIKGLMSLLALVSDGSPLVR 720 (1387)
T ss_pred HHHHHHHhccccc-----ccchhhhhhhhhhcchhhhhhHH-----------------HHHHhhHHHHHHHHhccchHHH
Confidence 9999999876543 13333333333333112222111 1111111357788999999999
Q ss_pred HHHHHHHHHHhhc-cchHHHHHHHHHhhccccchhhhhH
Q 005975 338 LLVLEVHACIAKD-LQHFRQLVVFLVHNFRVDNSLLEKR 375 (666)
Q Consensus 338 ~~~l~lLa~Is~~-~~~F~~fm~~LL~lf~~d~~lLe~R 375 (666)
......|+++.-+ ..+|..++. +....+...||.+
T Consensus 721 ~ev~v~ls~~~~g~~~~~~~va~---n~~~~~~~~lE~~ 756 (1387)
T KOG1517|consen 721 TEVVVALSHFVVGYVSHLKVVAG---NYLLPESSSLEKS 756 (1387)
T ss_pred HHHHHHHHHHHHhhHHHhHHHhh---hhcccchhhhhcc
Confidence 9988889998844 444544443 4344444444543
No 205
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=44 Score=36.30 Aligned_cols=234 Identities=14% Similarity=0.144 Sum_probs=131.9
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc----hhhh-hHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhh
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~----~il~-~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
+...|-+-+++..+|..|.-.||.-+.-|.+.|.. +++. -=++|++.+..++...|-+|-+|| +.+.|+..--.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 34556677889899999999999999888887652 3332 235888888888988999999999 66666432000
Q ss_pred cccccccHhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCC-CChhHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSD-SSHEIRQQADSALWE 181 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri-~~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~ 181 (666)
.-..-|.-+..=|+=...+ ---|.-+|+-.++.|--+-++.+...-. -=..+++.|..=+.. .+.-|+..+.+...+
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 0000011111111111101 1135567777777777777776653321 112334444433333 344466555554444
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHH------HHhcCcccccchHhHHHHHhhhhcCCcHHH
Q 005975 182 FLQEIKNSPSVDYGRMAEILVQRA--ASPDEFTRLTAITWINEF------VKLGGDQLVPYYADILGAILPCISDKEEKI 253 (666)
Q Consensus 182 fL~eI~~~~~~d~~~iI~iLl~~~--~s~d~~irl~Al~WL~~~------i~l~~~~l~pylp~lL~~LL~~Lsd~~~eI 253 (666)
+...=-....+.-..+|..+-.-+ .++||+.+..++-....| .+..++....-+|-.+.+.+.++.-.+++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 443111111122244555444433 344677766554433322 223455556667788888888888888888
Q ss_pred HHHHHHHHHHH
Q 005975 254 RVVARETNEEL 264 (666)
Q Consensus 254 R~~A~~~n~~L 264 (666)
.++|.++.+.+
T Consensus 321 ieaAiDalGil 331 (524)
T KOG4413|consen 321 IEAAIDALGIL 331 (524)
T ss_pred HHHHHHHHHhc
Confidence 88888876543
No 206
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.81 E-value=46 Score=36.34 Aligned_cols=226 Identities=15% Similarity=0.197 Sum_probs=132.7
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--Cc-----hh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV--PD-----ID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~sv--p~-----~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
..+++.|...+..-+-.+|+-++...+.+..- .+ .+ +..+-|++++.|+.--.+++-- -..+..++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia------l~~g~mlR 148 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA------LNCGDMLR 148 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH------HHHHHHHH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc------chHHHHHH
Confidence 35677788888888889999888888776432 22 11 2233489999888877766531 22344555
Q ss_pred HhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 185 eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
+.- .++.+..+++.. +.+ --++..+..+..||-.-|-.+..++
T Consensus 149 ec~-----k~e~l~~~iL~~------------------------~~f--------~~ff~~~~~~~Fdiasdaf~t~~~l 191 (335)
T PF08569_consen 149 ECI-----KHESLAKIILYS------------------------ECF--------WKFFKYVQLPNFDIASDAFSTFKEL 191 (335)
T ss_dssp HHT-----TSHHHHHHHHTS------------------------GGG--------GGHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHH-----hhHHHHHHHhCc------------------------HHH--------HHHHHHhcCCccHhHHHHHHHHHHH
Confidence 542 234444444331 011 1123334444555443333333332
Q ss_pred HHhhCCCCC------CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--hHHHhhhhH--HHHHHHHHhcCCCCH
Q 005975 265 RAIKADPAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH--RTEVLHFLN--DIFDTLLKALSDPSD 334 (666)
Q Consensus 265 ~~~i~~~~~------~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~--p~~i~~~l~--~l~p~LL~~LsD~s~ 334 (666)
+ ..... .-+|+.+.......+.+++-.||..++..|+.+..-- -+-|..|.+ .-+..++..|.|++.
T Consensus 192 l---t~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk 268 (335)
T PF08569_consen 192 L---TRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSK 268 (335)
T ss_dssp H---HSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-H
T ss_pred H---hccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcch
Confidence 2 11100 2357899999999999999999999999999888542 344566665 467888999999999
Q ss_pred HHHHHHHHHHHHHhhccch---H-------HHHHHHHHhhcc----ccchhhhhHHHHHHHHHhc
Q 005975 335 EVVLLVLEVHACIAKDLQH---F-------RQLVVFLVHNFR----VDNSLLEKRGALIIRRLCV 385 (666)
Q Consensus 335 eVv~~~l~lLa~Is~~~~~---F-------~~fm~~LL~lf~----~d~~lLe~Rg~~IIR~Lc~ 385 (666)
-|+-.|..+..-+..|+.- - +.-+...+.-|. +|....++| .++|+++-.
T Consensus 269 ~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK-~~li~~i~~ 332 (335)
T PF08569_consen 269 NIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEK-AYLIKQIES 332 (335)
T ss_dssp HHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHH-HHHHHHHHT
T ss_pred hhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHH-HHHHHHHHh
Confidence 9999999998888854211 1 112222233332 456777777 788887754
No 207
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.64 E-value=64 Score=37.78 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=102.5
Q ss_pred HhHHHHHhhhhcC----CcHHHHHHHHHHHHHHHHh-hCCC--------CCCCChHhHHHHHHHhcC----CCcHHHHHH
Q 005975 236 ADILGAILPCISD----KEEKIRVVARETNEELRAI-KADP--------ADGFDVGPILSIATRQLS----SEWEATRIE 298 (666)
Q Consensus 236 p~lL~~LL~~Lsd----~~~eIR~~A~~~n~~L~~~-i~~~--------~~~~dl~~il~~L~~~L~----~~~~~tR~a 298 (666)
++++..++..+.. ..+.++..|.-+.+.+..- +... ........+++.+..++. ..+...++.
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 4555555555443 3567888888877777543 2221 112223455555554443 556778899
Q ss_pred HHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhH
Q 005975 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP---SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (666)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~---s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (666)
+|..|+.+-. +..++.+.+.+.+. +..+|..|++.|.++.. .+=+.+-..|+..|.+...--|-|
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~--~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK--HCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG--T-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh--cCcHHHHHHHHHHhcCCCCChhHH
Confidence 9998887743 34667777777776 67889999999998863 345577888888887776666777
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHH
Q 005975 376 GALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAL 416 (666)
Q Consensus 376 g~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~L 416 (666)
..- ...|-..-++..+...++..+..|.+..+.+-+...|
T Consensus 578 iaA-~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 578 IAA-YLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHH-HHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 544 3344445577889999999998888877766555443
No 208
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.58 E-value=48 Score=36.24 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=127.8
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcch--------hhhhHHHHHHHHHHhhcCCchhHHHHHHHH----
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD--------FIIFFNQIFDALCKLSADSDANVQSAAHLL---- 96 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~--------il~~f~eIfd~L~kl~~D~d~~Vr~gA~~L---- 96 (666)
|-..++..++.+|..=+-+.|+-++....++.+.-.+. +..+.+++++.|+++.+++|...--|..+-
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh
Confidence 45567788888998889999999888888876542221 224458999999999999998776666321
Q ss_pred -HHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----hhhhhchHHHHHHHHHhcCCCChhH
Q 005975 97 -DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD----IDMLGFLPDFLDGLFNMLSDSSHEI 171 (666)
Q Consensus 97 -drLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~----~~Li~yLp~fL~gLf~lLsD~~~eV 171 (666)
..+++-+.. ++. +-.+.+.+...+=.+-.-+.+-+..+...-+ .-+..+...|+.-.-+++..+|--+
T Consensus 153 ~e~l~~~iL~-~~~------f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 153 HESLAKIILY-SEC------FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp SHHHHHHHHT-SGG------GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred hHHHHHHHhC-cHH------HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 113332222 221 2224455666666676666666665544332 2245688888887778999999999
Q ss_pred HHHHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 172 RQQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 172 R~~A~~~L~~fL~eI~~~~----~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
|+.+-++|++++.+=.+.. .++=++-+..++..++++..-+|..|.+-...|+.-+.
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9999999999996332210 23346667788888999999999999999999987654
No 209
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=86.34 E-value=34 Score=41.36 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=118.4
Q ss_pred HHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHhcCC-CCH
Q 005975 134 LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS--VDYGRMAEILVQRAAS-PDE 210 (666)
Q Consensus 134 alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~--~d~~~iI~iLl~~~~s-~d~ 210 (666)
+++..+.|.-.+...+-.|-.+||.-+-++|.+++++++..+|+++..|...-.+.|. ..|+.+|+..-.-+++ +++
T Consensus 76 amea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~ 155 (819)
T KOG1877|consen 76 AMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDD 155 (819)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccch
Confidence 3344454544455556667788888888999999999999999999999965555443 3578888888777766 333
Q ss_pred HH----------HHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCc--------HHH----HHH--------HHH
Q 005975 211 FT----------RLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKE--------EKI----RVV--------ARE 259 (666)
Q Consensus 211 ~i----------rl~Al~WL~~~i~l~~~~l~p-ylp~lL~~LL~~Lsd~~--------~eI----R~~--------A~~ 259 (666)
.. -+.++.|..++.++.+..--+ +...++|.++-.+...+ -++ +.. +.-
T Consensus 156 ~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~vl 235 (819)
T KOG1877|consen 156 DMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKVL 235 (819)
T ss_pred hhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCcccCcchh
Confidence 22 255778999888886543333 37777777776665432 111 000 111
Q ss_pred HHHHHHHhhCCCCCCCChHhHHHHHHHhcC-CCcHHHH--HHHHHHHHHHHhhChHHHhhhhHHHHHHHHHh
Q 005975 260 TNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATR--IEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (666)
Q Consensus 260 ~n~~L~~~i~~~~~~~dl~~il~~L~~~L~-~~~~~tR--~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~ 328 (666)
+...+.++.+....+.++..+++-|..++. +.-|.+- .++--|=..++...+......++.++-.|...
T Consensus 236 a~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~ 307 (819)
T KOG1877|consen 236 AERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNK 307 (819)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhh
Confidence 222333344433445567888888888865 3334432 45555555555444444444455565555543
No 210
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.24 E-value=86 Score=37.83 Aligned_cols=307 Identities=17% Similarity=0.184 Sum_probs=160.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCC---ch-hHHHHH-HHHHHHHHHhhccc
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADS---DA-NVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~kl~~D~---d~-~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
+..+..-+.|.-.-+|..|.--|-.++|.+.. .-+.-|..+|+-|+.++... |. .|-+-+ .+|..++|+-.+..
T Consensus 168 IS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ 247 (970)
T KOG0946|consen 168 ISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ 247 (970)
T ss_pred HHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh
Confidence 44556667788888999877666666654332 22466888899998877421 22 444444 67888888777665
Q ss_pred ccccHhhhHHHHHHhhc----CC----CHHH-H-H---HHHHHHHHhhcCCchhh-------hhchHHHHHHHHHhcCC-
Q 005975 108 DQFSIEEFIPLLRERMN----VL----NPYV-R-Q---FLVGWITVLDSVPDIDM-------LGFLPDFLDGLFNMLSD- 166 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~----~~----np~v-R-~---~alswL~~L~svp~~~L-------i~yLp~fL~gLf~lLsD- 166 (666)
+-|-=..+||.|...+. .. .|.. | + .++..++.+.+.....= .-.=..+++.|+.++..
T Consensus 248 ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 248 NFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred hHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 55555666777774432 22 1211 1 2 23444444443322111 12233567788876644
Q ss_pred -CChhHHHHHHHHHHHHHHHhhcC-------CCCCH----HHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCccccc
Q 005975 167 -SSHEIRQQADSALWEFLQEIKNS-------PSVDY----GRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVP 233 (666)
Q Consensus 167 -~~~eVR~~A~~~L~~fL~eI~~~-------~~~d~----~~iI~iLl~~~~s~d~-~irl~Al~WL~~~i~l~~~~l~p 233 (666)
...+|+..+...+...++.-... ..++. +.|+=.++....+..+ ..|-.++.-+..|..-..+.=..
T Consensus 328 ~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~ 407 (970)
T KOG0946|consen 328 GVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK 407 (970)
T ss_pred CCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH
Confidence 46789988877666665533221 01122 2233333334444443 35555555554444322222223
Q ss_pred chHhHHHH------------Hhhh--hcCCcHHHHHHHHHHHHHHHHhhCC--------------CCCCCChHhHHHH--
Q 005975 234 YYADILGA------------ILPC--ISDKEEKIRVVARETNEELRAIKAD--------------PADGFDVGPILSI-- 283 (666)
Q Consensus 234 ylp~lL~~------------LL~~--Lsd~~~eIR~~A~~~n~~L~~~i~~--------------~~~~~dl~~il~~-- 283 (666)
|+.+++|. .+-| +.+.++ ...-+.. ..||.++.+ ...+-|-..++..
T Consensus 408 ~l~tllp~~~nst~Nsl~ag~l~~~~l~s~d~-~~nwFt~--v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~c 484 (970)
T KOG0946|consen 408 FLKTLLPSSTNSTSNSLSAGQLLLVGLSSTDS-LDNWFTA--VILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQC 484 (970)
T ss_pred HHHHHhhhhccccccchhhhhHHHHhhccchH-HHHHHHH--HHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHH
Confidence 33343332 1111 112111 1110000 112222111 1112222334443
Q ss_pred -HHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH--HHHHHHHhcCCCC----HHHHHHHHHH
Q 005975 284 -ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND--IFDTLLKALSDPS----DEVVLLVLEV 343 (666)
Q Consensus 284 -L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~--l~p~LL~~LsD~s----~eVv~~~l~l 343 (666)
........-..+|+.-|..|+...-+||..+..|+.+ ++++|+..+.|.. +.|++.-|-+
T Consensus 485 t~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~ 551 (970)
T KOG0946|consen 485 TNLKLQGTSRHQTRVGLLMLLITWLYGCPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAF 551 (970)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 2333344557889999999999999999999998874 8888888887663 4455544433
No 211
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.16 E-value=16 Score=34.76 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=58.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHhhc
Q 005975 117 PLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 117 PlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD------~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
-.+..|+...||.+-.++++-+..+.+-.|..+-..+ -+|+..|.+++++ ++++||..+..++..--..+++
T Consensus 41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 41 RLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3456788899999999999999999888887664443 4677778888863 6789999999999888888865
Q ss_pred CC
Q 005975 189 SP 190 (666)
Q Consensus 189 ~~ 190 (666)
.|
T Consensus 121 ~p 122 (139)
T cd03567 121 EP 122 (139)
T ss_pred cc
Confidence 33
No 212
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.08 E-value=6.6 Score=46.11 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=94.9
Q ss_pred hhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-----chhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHH
Q 005975 30 LQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKVVR-----GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD 102 (666)
Q Consensus 30 l~~Il-~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r-----~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKD 102 (666)
+-.+. |.+.+++.-+++.||--|++-+.+.--.-. .+.=..+..=|..|.+++.|+-+.||+-| ..+-+..-.
T Consensus 171 l~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~ 250 (1005)
T KOG1949|consen 171 LYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK 250 (1005)
T ss_pred HHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 33344 566799999999999999998877532111 11112334557778899999999999988 554332110
Q ss_pred hhcccccccHhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005975 103 IVTESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (666)
Q Consensus 103 Iv~e~~~f~L~~fIPlL~eri-~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~ 181 (666)
.=--.+..-+..++..+..-+ .+....||-.....|.-+...|-. .+-|..+|+.|=-.+.|+...||.++...|-.
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 000001111223333333333 245569999999999988777753 23455667777788999999999988665443
No 213
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.50 E-value=14 Score=40.80 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH-HhhcCC--chhHHHHH-HHHHHHHHHhhc-cc-----------cc
Q 005975 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADS--DANVQSAA-HLLDRLVKDIVT-ES-----------DQ 109 (666)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~-kl~~D~--d~~Vr~gA-~~LdrLlKDIv~-e~-----------~~ 109 (666)
.-.|.+|++-+..+++.-++.....+......+. +..+++ +..-|.|| .++..+.--..+ .. .+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 3467889999988887654444433333333332 233344 45678888 444443221111 11 13
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
|-...++|-|. -=....|-.|.-+|..+..+.+.-+. ..+..+++.+.++|.+++.-|+.-|.-|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 44566677776 22246799999999999999875443 35677888888899999999999886653
No 214
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=13 Score=42.82 Aligned_cols=170 Identities=18% Similarity=0.097 Sum_probs=98.7
Q ss_pred hhhhhhHHHhhhh-hH-HHHHhhcCCCCHHHHHHHHHHHHHHHHHh-cchhhhhHHHHHHHHHHh-hcCCchhHHHHH-H
Q 005975 20 ADLFFYSETILQQ-IV-PPVLNSFSDQDSRVRYYACEALYNIAKVV-RGDFIIFFNQIFDALCKL-SADSDANVQSAA-H 94 (666)
Q Consensus 20 ~~~~~~~~~yl~~-Il-~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~-r~~il~~f~eIfd~L~kl-~~D~d~~Vr~gA-~ 94 (666)
.|+|+..--|-.+ .- .-|-.-+.|.|+-.||...-++ +-.. ...- +.+...|... ++|.+-.||.|| .
T Consensus 502 lgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~---alAy~GTgn----~~vv~~lLh~avsD~nDDVrRAAVi 574 (926)
T COG5116 502 LGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSL---ALAYVGTGN----LGVVSTLLHYAVSDGNDDVRRAAVI 574 (926)
T ss_pred hhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHH---HHHHhcCCc----chhHhhhheeecccCchHHHHHHHH
Confidence 4566666555322 11 2344456899999999875543 2221 1111 1334455544 799999999999 4
Q ss_pred HHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHH
Q 005975 95 LLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQ 174 (666)
Q Consensus 95 ~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~ 174 (666)
+|.-.|. .+.-.+...+.+|. .+-|++||...--.+...+.-.+... -++.|-.++-|++.=||++
T Consensus 575 AlGfvc~-----~D~~~lv~tvelLs---~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~ 640 (926)
T COG5116 575 ALGFVCC-----DDRDLLVGTVELLS---ESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQS 640 (926)
T ss_pred heeeeEe-----cCcchhhHHHHHhh---hccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHH
Confidence 4333211 11111222223322 35799999988777777776665543 2445556778999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCH
Q 005975 175 ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE 210 (666)
Q Consensus 175 A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~ 210 (666)
|+-+++-.+......-...+..|++....-+.++++
T Consensus 641 AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 641 AMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 988777666433222233566666666655555443
No 215
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.24 E-value=1.1e+02 Score=38.20 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-------chHHHHHHHH
Q 005975 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-------QHFRQLVVFL 361 (666)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~-------~~F~~fm~~L 361 (666)
.|-....|.-|++-|+.-...+|+-+.. +..+.++=.+|+|.+.+||.+++..|-.+.+++ .++..|=..+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3677889999999999888888887664 456677778999999999999999999888642 2345566666
Q ss_pred HhhccccchhhhhHHHH----HHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHHHhcc
Q 005975 362 VHNFRVDNSLLEKRGAL----IIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLT 422 (666)
Q Consensus 362 L~lf~~d~~lLe~Rg~~----IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLT 422 (666)
+.|-..|.. ..-|..- +-+.-|..|+.+.|+...+-+...+.+... ..+..|+.-+..
T Consensus 375 VeMadrd~~-~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~--aa~~fl~~k~~~ 436 (1048)
T KOG2011|consen 375 VEMADRDRN-VSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAV--AAGEFLYKKLFE 436 (1048)
T ss_pred HHHHhhhcc-hhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHH--HHHHHHHHHhhc
Confidence 666633321 1223222 334446678888888888877765544444 455556555544
No 216
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.22 E-value=1.4e+02 Score=39.41 Aligned_cols=236 Identities=14% Similarity=0.122 Sum_probs=135.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh-hcCCchhHHHHH-HHHHHHHHHhhcccccccHh
Q 005975 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (666)
Q Consensus 36 pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl-~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~ 113 (666)
-+...+.-+++..|-+|.|++...+.++...- +.-++.+..++- .+-.|+.-|.|= -++..+-|+.+.-.+...+.
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~--f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAP--FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 34566778899999999999988887655432 334555555533 444566666665 57788888776644334455
Q ss_pred hhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005975 114 EFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIKNSPS 191 (666)
Q Consensus 114 ~fIPlL~eri~~~-np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL-sD~~~eVR~~A~~~L~~fL~eI~~~~~ 191 (666)
.=+-.+.....+. .|.|+.+.+-.+..+..-.+.-...|...-+.-+.+++ +++. .+....++.++..- ++
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~--~~~ev~q~~~R~~~-----~~ 1030 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT--SHVEVHQCYNRCFN-----GD 1030 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc--chhhhhhhhccccc-----cc
Confidence 5555677777775 45999999988887665444333445544444444443 4544 22222333443331 34
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC
Q 005975 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (666)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (666)
.|.+.++..+-.-++-.-.. +...-+-...+-+..-.++.+++-....|-++.+.+.-+...
T Consensus 1031 ~~~~alittlgpeL~~N~~~-----------------d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr- 1092 (2067)
T KOG1822|consen 1031 DDEDALITTLGPELGPNGDK-----------------DSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR- 1092 (2067)
T ss_pred hhHHHHHHhcccccCCCCcc-----------------cchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch-
Confidence 45556665555444322100 001111122222222245566676777777888777655432
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHH
Q 005975 272 ADGFDVGPILSIATRQLSSEWEATRIEAL 300 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tR~aaL 300 (666)
..+++.++..+...+.+...-.|-+++
T Consensus 1093 --~~n~~~lV~~L~~~l~s~~~i~r~~~~ 1119 (2067)
T KOG1822|consen 1093 --HVNLDSLVLQLCSLLSSSYLILRRASF 1119 (2067)
T ss_pred --hccHHHHHHHHHHHhcchhhhhhhhHH
Confidence 567888888888877765544443333
No 217
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=85.19 E-value=1.5 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+.+|.|++.|++++++|+..++|.|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999886
No 218
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.01 E-value=3 Score=37.69 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC
Q 005975 207 SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 207 s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (666)
..+...|..++.-|.+++++++..+.++.|++...+..++..+ +.|..|.++-..+.+.+.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 3567789999999999999999999999999999999888876 8999999998888877754
No 219
>PF05536 Neurochondrin: Neurochondrin
Probab=84.81 E-value=86 Score=36.57 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=102.5
Q ss_pred hhhhhHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccc
Q 005975 29 ILQQIVPPVLNSFSDQDS-RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES 107 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~-rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~ 107 (666)
-+-.-+|.++.++...+. .+-.-|.+.|+.|+..-.|.-.-.=...++.|+..+.+.......+..++-.++-....+.
T Consensus 95 ~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~~~ 174 (543)
T PF05536_consen 95 QMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQKS 174 (543)
T ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhh
Confidence 345567888888877776 7777888888888732222111011245677777776644433333366666655433221
Q ss_pred ---ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch------hhhhchHHHHHHHHHhc-CCCChhHHHHHHH
Q 005975 108 ---DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI------DMLGFLPDFLDGLFNML-SDSSHEIRQQADS 177 (666)
Q Consensus 108 ---~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~------~Li~yLp~fL~gLf~lL-sD~~~eVR~~A~~ 177 (666)
..-.+..+++.+.+.+....-..|--+|.-+..+..-.+. .--.+++.+..|+-.++ +-+.+.-|..|..
T Consensus 175 ~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~ 254 (543)
T PF05536_consen 175 WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALN 254 (543)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2334667788888888766666666677877766543321 22357888888998888 4578899999988
Q ss_pred HHHHHHHHhh
Q 005975 178 ALWEFLQEIK 187 (666)
Q Consensus 178 ~L~~fL~eI~ 187 (666)
+...+++..+
T Consensus 255 Laa~Ll~~~G 264 (543)
T PF05536_consen 255 LAASLLDLLG 264 (543)
T ss_pred HHHHHHHHhC
Confidence 8888887654
No 220
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.80 E-value=39 Score=39.56 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHH
Q 005975 132 QFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF 211 (666)
Q Consensus 132 ~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~ 211 (666)
+.++++...|.... ....|...++.++..+++|+...|+.++|+++..+.. ++..-.
T Consensus 303 ~vav~c~~~Ll~a~--pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~---------------------~D~~g~ 359 (704)
T KOG2153|consen 303 QVAVQCACELLEAV--PHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFE---------------------NDNGGS 359 (704)
T ss_pred HHHHHHHHHHHHhh--hhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhc---------------------CCCccc
Confidence 44566666554321 1456788899999999999999999999998888774 222245
Q ss_pred HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHH--------HHHHHHHHH-----------------H
Q 005975 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVV--------ARETNEELR-----------------A 266 (666)
Q Consensus 212 irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~--------A~~~n~~L~-----------------~ 266 (666)
+.+.++.|+..+++- .-.++.|.++..++..=.+.+...... +........ +
T Consensus 360 ~sl~~Vr~i~~llK~---rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~r 436 (704)
T KOG2153|consen 360 GSLAIVRIINSLLKT---RNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIER 436 (704)
T ss_pred hhHHHHHHHHHHhhh---hcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 667778888766653 446677887777765433322110000 000000000 0
Q ss_pred hhCCCCCC--------CChHhHHHHHHH----hcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC-
Q 005975 267 IKADPADG--------FDVGPILSIATR----QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS- 333 (666)
Q Consensus 267 ~i~~~~~~--------~dl~~il~~L~~----~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s- 333 (666)
-..+ .+. ....++++++.. -+.++....=-+++.-+..+.+...-++..-+..++-.++..-.-..
T Consensus 437 E~re-aea~e~aeek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~~dll~vlk~ll~d~~~~~r 515 (704)
T KOG2153|consen 437 EMRE-AEAEESAEEKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFLGDLLKVLKELLEDIELSYR 515 (704)
T ss_pred Hhhh-hhccccHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHhhhHHHHHHHHHHhhhHHHH
Confidence 0000 010 112344443332 23332221233444555555555555555555566666665443333
Q ss_pred --HHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhc---cccchhhhhHHHHHHHHHhccCCh
Q 005975 334 --DEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNF---RVDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 334 --~eVv~~~l~lLa~Is~-~~~~F~~fm~~LL~lf---~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
..-|..+..+++..+. -.-.|..|++.|-+++ ..+.. .-|..||-++--.+..
T Consensus 516 e~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~---~~~~~~ilr~~d~~~~ 574 (704)
T KOG2153|consen 516 EALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPD---DDGFAIILRLLDPLLI 574 (704)
T ss_pred HHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCC---cchHHHHHHHhhHhhh
Confidence 3345566666666554 2346666777776644 22221 1156666666665543
No 221
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.54 E-value=1.6 Score=31.97 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=27.1
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIA 60 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~ 60 (666)
..+|+++..+.+.|..||..|+-++.|++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999986
No 222
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.48 E-value=12 Score=35.71 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=62.4
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCC
Q 005975 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 114 ~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
.-+-.|..|+...||.+-..++.-+..+.+-.|..+...+ -+|++.|.+++.+ .+++||..+..++..-...+++.+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3345567888899999999999999999888886554322 4788999999999 789999999999999888887543
No 223
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.29 E-value=50 Score=38.08 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=94.7
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcC--------CCHHHHHHHHHH
Q 005975 66 DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV--------LNPYVRQFLVGW 137 (666)
Q Consensus 66 ~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~--------~np~vR~~alsw 137 (666)
+...||++|..++.. +++.-|..| +.++-++++ +..|+|.+..+|.. .|-..=.+++.-
T Consensus 204 ElQlYy~~It~a~~g----~~~~~r~eA------L~sL~TDsG---L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 204 ELQLYYKEITEACTG----SDEPLRQEA------LQSLETDSG---LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHHH------HHhhccCcc---HHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 445788998888743 444445544 233455543 66666666666642 223333456666
Q ss_pred HHHhhcCCchhhhhchHHHHHHHHHhc----------CCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCC
Q 005975 138 ITVLDSVPDIDMLGFLPDFLDGLFNML----------SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (666)
Q Consensus 138 L~~L~svp~~~Li~yLp~fL~gLf~lL----------sD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s 207 (666)
+..|.+-|.+.+-+|+..+++.+..++ .|.+-.+|.-|...+..+++.+.....-=...++..+.+...+
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 677788899999999999999997432 2345569999999999998877542212236677788877766
Q ss_pred CC--HHHHHHHHHHHHHHHH
Q 005975 208 PD--EFTRLTAITWINEFVK 225 (666)
Q Consensus 208 ~d--~~irl~Al~WL~~~i~ 225 (666)
.. .-...-|+.-+.+|-.
T Consensus 351 ~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 351 NKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CCCCchhhhhHHHHHHHhhh
Confidence 52 3345556666655543
No 224
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=84.04 E-value=11 Score=34.05 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 291 ~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
.....|..++.-+..+.+.+++.+..+.+++...|-.+|..+ +++..++++|..+..
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 557789999999999999999999999999999999998876 899999999998883
No 225
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.82 E-value=56 Score=33.62 Aligned_cols=204 Identities=18% Similarity=0.176 Sum_probs=125.7
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCH
Q 005975 116 IPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (666)
Q Consensus 116 IPlL~e-ri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~ 194 (666)
+|.|.- .-...+|....-++..+-.+.... - ...|.++..|-.+...++.+.+..+...+..+-+ .....|
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~----~~~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK----ANDRHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH----hCchHH
Confidence 444444 334577888877777777666544 2 6688889999988888888886665555555543 222233
Q ss_pred HHHHHHHHH---h----cCCCC--HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh-cCCcHHHHHHHHHHHHHH
Q 005975 195 GRMAEILVQ---R----AASPD--EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETNEEL 264 (666)
Q Consensus 195 ~~iI~iLl~---~----~~s~d--~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~L-sd~~~eIR~~A~~~n~~L 264 (666)
+.+=+.+.. + ..+.+ .+.......-+..++...|+ +-+.+++.|-.++ .+.++.++..|-++...+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333333333 1 11112 23333334577788888776 6788888888888 777888888888877777
Q ss_pred HHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHH-HHHHHHHHHhhC--hHHHhhhhHHHHHHHHHhcCCCCHHH
Q 005975 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIE-ALHWISTLLNRH--RTEVLHFLNDIFDTLLKALSDPSDEV 336 (666)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~a-aL~WL~~L~~~~--p~~i~~~l~~l~p~LL~~LsD~s~eV 336 (666)
. +++.+|+.....++...++.+..+.-.. -..|+..+..+. .++...+-.+++..+-+..+..+..+
T Consensus 150 c-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~ 219 (234)
T PF12530_consen 150 C-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNV 219 (234)
T ss_pred H-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccch
Confidence 6 2356788999999999996544332222 224555554443 23344455556666655555555433
No 226
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.94 E-value=1.1e+02 Score=41.58 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=80.5
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
+..|++.++++= +.++-..+...++.+.-.++....-..+..+.-+++-+++..+.-|..|..-+.+...-.|
T Consensus 94 ~~n~l~~l~~~~-------~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P 166 (2341)
T KOG0891|consen 94 LANYLRYLLPSN-------DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVP 166 (2341)
T ss_pred HHHHHHHhhccC-------ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCc
Confidence 344555555533 5566666778888888766553333344455555555544344445666667777777789
Q ss_pred cccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC
Q 005975 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 229 ~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (666)
..+.|+++.+...++-..-+.++.||..|+.+.........+
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 167 TFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999998776655543
No 227
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=82.87 E-value=96 Score=36.35 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=120.5
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh-cchhhhhHHHHHHHHHHhhcCC
Q 005975 7 FLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV-RGDFIIFFNQIFDALCKLSADS 85 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~-r~~il~~f~eIfd~L~kl~~D~ 85 (666)
+..||+-+- |+.-|..-..+...++.=++.-=.++---+|+.|-..+++|-+-. .... .+. ..
T Consensus 188 llveFvs~~---~v~~~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~---------~ls----EK 251 (740)
T COG5537 188 LLVEFVSEW---VVSVGIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAF---------SLS----EK 251 (740)
T ss_pred HHHHHHHHH---hhhceeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHH---------HHH----HH
Confidence 445555443 444466666777777777766666666667899988888875421 1110 110 01
Q ss_pred chhHHHHH--H----HHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHH-
Q 005975 86 DANVQSAA--H----LLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLD- 158 (666)
Q Consensus 86 d~~Vr~gA--~----~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~- 158 (666)
...+-+-+ . .++..++||+ .-.+..|+.+.++-+|..++..++.=. ..+|+++-
T Consensus 252 ksR~ne~~l~~ln~sl~~d~i~dic-----------dsvfvsRy~Dv~d~IRv~c~~~L~dwi--------~lvP~yf~k 312 (740)
T COG5537 252 KSRMNELALYDLNPSLIRDEIKDIC-----------DSVFVSRYIDVDDVIRVLCSMSLRDWI--------GLVPDYFRK 312 (740)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHHH-----------HHHHhhhccchhHHHHHHHHHHHHHHH--------hcchHHHHh
Confidence 11111111 1 1233334443 445678889999999988776665322 23333332
Q ss_pred -----HHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005975 159 -----GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 159 -----gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~--d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l 231 (666)
..--+|+|.+..||..+.+.+.-|...++....+ .++.+..-+++.+...-.-+|.-++.-+..+-..+--
T Consensus 313 ~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L-- 390 (740)
T COG5537 313 ILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL-- 390 (740)
T ss_pred hhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc--
Confidence 2235789999999999988888887655332111 2566777777765443333777666555444433211
Q ss_pred ccchHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 232 VPYYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
=..-+-.+.+||=|..|+-|..-.+.
T Consensus 391 ---~~SeIlIvsscmlDi~pd~r~~~~E~ 416 (740)
T COG5537 391 ---SSSEILIVSSCMLDIIPDSRENIVES 416 (740)
T ss_pred ---chhHHHHHHHHHhcCCCcchHHHHHH
Confidence 12344566777877777655443333
No 228
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=3.8 Score=41.61 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=69.6
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005975 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 147 ~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l 226 (666)
.+.-.|||.|++||..+ +..-|-.|.+-+.+++..-+++...=++.+|..|-..+.+.|.++...++.-|..++..
T Consensus 110 Ldy~~yLp~F~dGL~e~----~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 110 LDYCPYLPLFFDGLAET----DHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred ccchHHHHHHhhhhhhc----CCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 45778999999998753 33445555566666666555444456789999999999999999988888887777665
Q ss_pred c---CcccccchHhHHHHH
Q 005975 227 G---GDQLVPYYADILGAI 242 (666)
Q Consensus 227 ~---~~~l~pylp~lL~~L 242 (666)
. |..++||.-++||.+
T Consensus 186 ~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 186 VGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred ccccchhhhhHHHHhhhhh
Confidence 4 578999999999965
No 229
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=81.66 E-value=1.9 Score=30.86 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=26.1
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIA 60 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~ 60 (666)
.+++++..++..+.+++.+|+.+++|++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 7889999999999999999999999986
No 230
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.55 E-value=85 Score=36.49 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHHHHhc---Ccc-----cccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhH
Q 005975 209 DEFTRLTAITWINEFVKLG---GDQ-----LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI 280 (666)
Q Consensus 209 d~~irl~Al~WL~~~i~l~---~~~-----l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~i 280 (666)
++.++.+|+--...++.-. ... .-.|.+.+...+-.+.+..+.+.+.++-++.+. .-....
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN-----------~g~~~~ 478 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN-----------AGHPSS 478 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc-----------cCChhH
Confidence 4556666666666555521 111 123444444444445444444444444444432 223455
Q ss_pred HHHHHHhcC-C--CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 281 LSIATRQLS-S--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 281 l~~L~~~L~-~--~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
++++...+. + .....|.+|+..|..++..+|+.+.+.+-.++ .+ .++++|||-.|+-+|-+
T Consensus 479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~---~n--~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY---LN--RAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH---cC--CCCChHHHHHHHHHHHh
Confidence 666666554 2 34678999999999999999988776443333 11 13567888877765443
No 231
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.39 E-value=43 Score=33.20 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=60.5
Q ss_pred HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHh
Q 005975 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 315 (666)
Q Consensus 236 p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~ 315 (666)
.+.++-|+.+.-+++..+|..|.+..+...+..- .+-...++++.....|++..+|-.|..-+..+++++++=+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4456666777778899999999988776654321 34468899999999999999999999999999999987665
Q ss_pred h
Q 005975 316 H 316 (666)
Q Consensus 316 ~ 316 (666)
.
T Consensus 82 ~ 82 (187)
T PF12830_consen 82 S 82 (187)
T ss_pred H
Confidence 4
No 232
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.31 E-value=1.2e+02 Score=37.31 Aligned_cols=248 Identities=12% Similarity=0.106 Sum_probs=135.6
Q ss_pred HHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHhcCCCC
Q 005975 135 VGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-----DYGRMAEILVQRAASPD 209 (666)
Q Consensus 135 lswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~-----d~~~iI~iLl~~~~s~d 209 (666)
+..|..+....+.++...|-..+=.++.-++++++-|++.|..|+-+......-..-. +.+.+++-+-..+.+.+
T Consensus 569 ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~ 648 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSG 648 (1014)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCC
Confidence 3445555566677888888888888888899999999999999999988766431100 12334444444444221
Q ss_pred --HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHH---HHHHhhCCC-CCCCCh----Hh
Q 005975 210 --EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE---ELRAIKADP-ADGFDV----GP 279 (666)
Q Consensus 210 --~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~---~L~~~i~~~-~~~~dl----~~ 279 (666)
+.+. .-+..+++.++...+|++.+++..++..+.+....- |....+ .+++..+.. .+.-.+ +.
T Consensus 649 ~s~~~~----~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~---~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~ 721 (1014)
T KOG4524|consen 649 MSPRVP----DVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYS---CLQFFQLLHSIIKEMKKKYINDEILGHIADQ 721 (1014)
T ss_pred CCchhH----HHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHhhccccchhhHHHHHH
Confidence 1111 123344566667778888888888777766332110 111111 122222110 000000 00
Q ss_pred HHHHHHH-------hcC-CCcHHHH----HHHHHHHHHHHhh--Ch---------------------------HHHhhhh
Q 005975 280 ILSIATR-------QLS-SEWEATR----IEALHWISTLLNR--HR---------------------------TEVLHFL 318 (666)
Q Consensus 280 il~~L~~-------~L~-~~~~~tR----~aaL~WL~~L~~~--~p---------------------------~~i~~~l 318 (666)
......+ ++. ..+...+ .-.-....++.++ ++ ..-....
T Consensus 722 ~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv 801 (1014)
T KOG4524|consen 722 HISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIV 801 (1014)
T ss_pred HHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHH
Confidence 0011111 110 0011111 0000111223311 00 0111233
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchH----HHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh
Q 005975 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHF----RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 319 ~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is----~~~~~F----~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
.+++..-...|++++-.++-+++.+|+... ..+..| ..+-..+++.+..+..+.-.|+--.|+++|..=+.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 456666777899999999999999988765 334444 34667888899888888888877799999987665
No 233
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.31 E-value=39 Score=36.53 Aligned_cols=154 Identities=19% Similarity=0.114 Sum_probs=84.3
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHH----HhhcCCchhHHHHH-----HHHHH-
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALC----KLSADSDANVQSAA-----HLLDR- 98 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv-~r~~il~~f~eIfd~L~----kl~~D~d~~Vr~gA-----~~Ldr- 98 (666)
-+.++..+.++|.|+.+-+|.+-+.++.++... ..+....+...+.+.|. +..+.+-+...+|. ..+..
T Consensus 59 ~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~ 138 (339)
T PF12074_consen 59 PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALS 138 (339)
T ss_pred CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhc
Confidence 356778889999999999999998888887651 01223333344444444 44456655544322 12110
Q ss_pred --HH-----HHhhcccccccHhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCCC-
Q 005975 99 --LV-----KDIVTESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDS- 167 (666)
Q Consensus 99 --Ll-----KDIv~e~~~f~L~~fIPlL~eri~~~--np~vR~~alswL~~L~svp~~~Li~y-Lp~fL~gLf~lLsD~- 167 (666)
-. +.+...+-.. -++=-.++.+++|.. ++..-.+++..+..+..-........ ...+-..+.-++..+
T Consensus 139 ~~~~~~~~~~~~~~~~l~~-~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~ 217 (339)
T PF12074_consen 139 SWKLDKIDSKNISFWSLAL-DPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSN 217 (339)
T ss_pred cccchhhhhhhhhhhhhcc-CCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCC
Confidence 00 0000000000 011112455666654 56666666666665543322222222 245566666677777
Q ss_pred -ChhHHHHHHHHHHHHHH
Q 005975 168 -SHEIRQQADSALWEFLQ 184 (666)
Q Consensus 168 -~~eVR~~A~~~L~~fL~ 184 (666)
..+||+.|.+++.++..
T Consensus 218 ~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 218 VSWKVRRAALSALKKLYA 235 (339)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 89999999888888775
No 234
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=81.05 E-value=66 Score=38.24 Aligned_cols=200 Identities=16% Similarity=0.190 Sum_probs=116.3
Q ss_pred HHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-----------------CCH-HHH
Q 005975 137 WITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-----------------VDY-GRM 197 (666)
Q Consensus 137 wL~~L~svp~-~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~-----------------~d~-~~i 197 (666)
.|+.|+.++. +..- =-.|+.+|-+++-+=.+.|-. .+.|-.+++++.+..- .+| ..|
T Consensus 275 aLrfLD~l~~kdn~q--Ks~Flk~Ls~~ip~fp~rv~~--~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~ 350 (700)
T KOG2137|consen 275 ALRFLDDLPQKDNSQ--KSSFLKGLSKLIPTFPARVLF--QKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKM 350 (700)
T ss_pred hhhhcccccccCcHH--HHHHHHHHHHhhccCCHHHHH--HhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhh
Confidence 4555555544 2221 124677777777665544433 3566666666644211 011 234
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 005975 198 AEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 276 (666)
Q Consensus 198 I~iLl~~~~s~d-~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d 276 (666)
.|.|..-...++ .++.+.-++=++.+.+.-+.. .+..+|+|.|..++.+.+..+.+.+-+....+.+.++- ..-
T Consensus 351 ~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~v 425 (700)
T KOG2137|consen 351 LPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFV 425 (700)
T ss_pred hHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHH
Confidence 444443333222 233343444443333332222 24789999999999999999998888887777665431 000
Q ss_pred hHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
=..+++.+...+ ...+..+|..++.-+..+.+.+ +-..-++ .++.++++..-.+++++...+.+-....
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--D~~~v~d-~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--DKAAVLD-ELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH--HHHHhHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 146667666654 4667889999999999888443 1123333 4455778888888888887776655544
No 235
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.92 E-value=23 Score=33.14 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHhhcCC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD~~--~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
+-.|..|+...||.+-..++.-+..+.+-.+..+...+ -+|++.|.++++++. +.||+.+...+..--..+++.|
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 117 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP 117 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 44577888899999999999999999888887765444 458899999998854 3499999898888888886643
No 236
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.84 E-value=4.2 Score=37.86 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc-----------HHHHHHHHHH
Q 005975 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-----------EKIRVVARET 260 (666)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~-----------~eIR~~A~~~ 260 (666)
.++.+++++|.+++++.++-|++.|+.-|..++.-++..|..++-+=...|-.+..+.. ..||..|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 35778999999999999999999999999999999998888887777777766665432 3688888887
Q ss_pred HHHHH
Q 005975 261 NEELR 265 (666)
Q Consensus 261 n~~L~ 265 (666)
...+.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 65543
No 237
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=36 Score=43.57 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=57.6
Q ss_pred hHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 115 FIPLLRERM---NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 115 fIPlL~eri---~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
|-|+..+-+ .+.++.+|+.++-.+.++.+.-+.+.+..+|+.+|-|-.++.|.+.+|...|......+=
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e 1610 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLE 1610 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445444444 567789999999999999999999999999999999999999999999998876444443
No 238
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.77 E-value=22 Score=40.88 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=95.8
Q ss_pred hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC--------CHHHHHHHHHH
Q 005975 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP--------DEFTRLTAITW 219 (666)
Q Consensus 148 ~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~--------d~~irl~Al~W 219 (666)
++.-|+.++.. .+.+.++.-|++| |..+.. +.-+..++|+++.++... |-+.=.+.+..
T Consensus 204 ElQlYy~~It~----a~~g~~~~~r~eA-------L~sL~T--DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 204 ELQLYYKEITE----ACTGSDEPLRQEA-------LQSLET--DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHH----HHhcCCHHHHHHH-------HHhhcc--CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 34555555555 4445777778776 445544 334667777777765433 11222345556
Q ss_pred HHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHH
Q 005975 220 INEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 299 (666)
Q Consensus 220 L~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aa 299 (666)
+..+.+-+.-.+-||+..++|.++.|+....---| . ..|.+|..|--|
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~------------------------p--------~~dnhwaLRDfA 318 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR------------------------P--------ELDNHWALRDFA 318 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC------------------------c--------cccchHHHHHHH
Confidence 66666666667889999999999999865321100 0 445678888888
Q ss_pred HHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 005975 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (666)
Q Consensus 300 L~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (666)
...+..+....++.....-+.++-++.+.+.|+.
T Consensus 319 A~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888889999999999874
No 239
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.47 E-value=32 Score=34.64 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=30.6
Q ss_pred hcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 63 VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 63 ~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
.+...-+++..++..|.++-.+.+...|+.+ .++...++.+..
T Consensus 31 lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 31 LGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 3444457788888888888888887778777 567766664443
No 240
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=79.90 E-value=86 Score=33.17 Aligned_cols=193 Identities=19% Similarity=0.252 Sum_probs=121.2
Q ss_pred hhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--Hhhc
Q 005975 113 EEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ--EIKN 188 (666)
Q Consensus 113 ~~fIPlL~eri~~--~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~--eI~~ 188 (666)
..=+|.|.+-+.+ +.|-||--+-..+..+- .|+.++.|-++..||.++||..|.-++.++-. .+..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 3447788887775 66899988888777432 56677778888899999999988777777632 2211
Q ss_pred C----C--CC---------CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHH
Q 005975 189 S----P--SV---------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (666)
Q Consensus 189 ~----~--~~---------d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eI 253 (666)
. | ++ ++.++-..|++... .-+-|..|++.++. +++ ..-+-++...++++..-+
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~--~l~~Ry~amF~LRn---~g~-------EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETK--PLFERYRAMFYLRN---IGT-------EEAINALIDGLADDSALF 203 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcch--hHHHHHhhhhHhhc---cCc-------HHHHHHHHHhcccchHHH
Confidence 0 1 01 23344444443322 12346677777763 333 334566777888888888
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC
Q 005975 254 RVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (666)
Q Consensus 254 R~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (666)
|-.+.-+.+++.. ..-++.|.+.|. .+++.+|-.|...|++++.- +-++.|-+.+.|
T Consensus 204 rhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D 262 (289)
T KOG0567|consen 204 RHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGD 262 (289)
T ss_pred HHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCC
Confidence 8888777766532 233444455443 25578999999999998873 345556666677
Q ss_pred CCHHHHHHHHHHHHHHh
Q 005975 332 PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 332 ~s~eVv~~~l~lLa~Is 348 (666)
+++-|+..+--.|.-+.
T Consensus 263 ~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLE 279 (289)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 66655554433444443
No 241
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=79.58 E-value=6.9 Score=38.97 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcCCchh-HHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005975 71 FNQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (666)
Q Consensus 71 f~eIfd~L~kl~~D~d~~-Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~L 149 (666)
.++.++.++..+.=.++. |+++-.+|.. =...+...-+.+|...+. |+.||++||.|+. +.++.++
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~--------W~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~---~~~d~~l 108 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKK--------WAPLDPEDALELLSPKFP--DPFVRAYAVERLE---SASDEEL 108 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHc--------CCCCCHHHHHHHhCccCC--CHHHHHHHHHHHH---hCCHHHH
Confidence 355555555545444443 4443333221 123456666777776654 8999999999875 6888999
Q ss_pred hhchHHHHHHH
Q 005975 150 LGFLPDFLDGL 160 (666)
Q Consensus 150 i~yLp~fL~gL 160 (666)
..|+|.+++.|
T Consensus 109 ~~yLpQLVQaL 119 (184)
T smart00145 109 LLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHH
Confidence 99999999977
No 242
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.92 E-value=53 Score=35.29 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=83.7
Q ss_pred chhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccc-cccHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q 005975 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESD-QFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVL 141 (666)
Q Consensus 65 ~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~-~f~L~~fIPlL~eri~~--~np~vR~~alswL~~L 141 (666)
.+...||+.++.+| +..++...|.|| |..+ -.++| ..-++.||-.+.|.+.- .|-..-..++.-++.+
T Consensus 193 KELq~YF~kvisal---~dEs~~~~r~aA--l~sL----r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sL 263 (450)
T COG5095 193 KELQMYFDKVISAL---LDESDEQTRDAA--LESL----RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSL 263 (450)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHh----ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45567999998888 455667778877 2222 22332 11245555555555532 3444445566666667
Q ss_pred hcCCchhhhhchHHHHHHHHHhc------CCCCh----hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC--
Q 005975 142 DSVPDIDMLGFLPDFLDGLFNML------SDSSH----EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-- 209 (666)
Q Consensus 142 ~svp~~~Li~yLp~fL~gLf~lL------sD~~~----eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d-- 209 (666)
.+-+.+=+-+|+..+++.+..++ ++|+. .+|..|...|+-.++.+.....-=-+.++..+++..-+.+
T Consensus 264 L~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~ 343 (450)
T COG5095 264 LKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKT 343 (450)
T ss_pred hcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccc
Confidence 77777666678888888876443 33332 2898888888887776644211112555555555443322
Q ss_pred HHHHHHHHHHHH
Q 005975 210 EFTRLTAITWIN 221 (666)
Q Consensus 210 ~~irl~Al~WL~ 221 (666)
+-++.-|+.-++
T Consensus 344 ~sT~YGalkgls 355 (450)
T COG5095 344 ESTQYGALKGLS 355 (450)
T ss_pred cchhhhhhhhhh
Confidence 234444444443
No 243
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.59 E-value=1.6e+02 Score=35.61 Aligned_cols=351 Identities=16% Similarity=0.158 Sum_probs=180.5
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIV 104 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv 104 (666)
.+.+.+.+...|-.| .-..=|..||-+|..++|..|.++. ..++.+++.|-+--.|+|. -+.| ||.++.=+.
T Consensus 20 ~aETI~kLcDRvess---TL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~--ik~~--LdTl~il~~ 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESS---TLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEI--IKYA--LDTLLILTS 92 (970)
T ss_pred HHhHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHH--HHHH--HHHHHHHHh
Confidence 345566666555433 2344588888899888877665432 3344444444333333221 1122 333322111
Q ss_pred cc-----------ccc--------c-cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh---hhhchHHHHHHHH
Q 005975 105 TE-----------SDQ--------F-SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID---MLGFLPDFLDGLF 161 (666)
Q Consensus 105 ~e-----------~~~--------f-~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~---Li~yLp~fL~gLf 161 (666)
.+ +.. | --+.+|..+.+.+..-|=.||.+++..++.+.+.-+.+ .+.-.|.=+..|.
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 11 000 0 02456888888888889999999999999998876644 5667888888889
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHhc--Cccc---
Q 005975 162 NMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASP----DEFTRLTAITWINEFVKLG--GDQL--- 231 (666)
Q Consensus 162 ~lLsD~~~eVR~~A~~~L~~fL~eI~~~~-~~d~~~iI~iLl~~~~s~----d~~irl~Al~WL~~~i~l~--~~~l--- 231 (666)
.++.|+..-||+.+.-.|.++.+.-.... -+.|+++.+-|..-+... .-.|-..|+..|..+++-. ...+
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 99999999999999877777765331100 023555555555444321 2356777888888877742 2222
Q ss_pred ccchHhHHHHHhhhhcCCcHH-HHHHHHH---HH--HHHHHhhCCCCCC----------CChHhHHHHHHHhcCCCcHHH
Q 005975 232 VPYYADILGAILPCISDKEEK-IRVVARE---TN--EELRAIKADPADG----------FDVGPILSIATRQLSSEWEAT 295 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~~~e-IR~~A~~---~n--~~L~~~i~~~~~~----------~dl~~il~~L~~~L~~~~~~t 295 (666)
-.|+|++...+ +.-.+.+.| .--..++ ++ -.+.+....+++. ++-..++.+|...+.++..+.
T Consensus 253 ~~~i~rL~klL-~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 253 GSYIPRLLKLL-SVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred cccHHHHHhhc-CcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 24566554322 222222211 1111111 11 1122333333221 223466778888888775444
Q ss_pred HH--HHHHHHHHHHhhChHH-------HhhhhHH---HHHHHHHhcCC-CCH-HHHHHHHHHHHHHh-hccchHHHHHHH
Q 005975 296 RI--EALHWISTLLNRHRTE-------VLHFLND---IFDTLLKALSD-PSD-EVVLLVLEVHACIA-KDLQHFRQLVVF 360 (666)
Q Consensus 296 R~--aaL~WL~~L~~~~p~~-------i~~~l~~---l~p~LL~~LsD-~s~-eVv~~~l~lLa~Is-~~~~~F~~fm~~ 360 (666)
.+ .++.-+.++.+++... ..|+.+. .+..++-++-. ..+ ..|-.++.++..+- +|+.-=.+|+..
T Consensus 332 dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~t 411 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKT 411 (970)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 33 4444444555554221 2223221 11112222211 111 12222233333333 344444678888
Q ss_pred HHhhccccchhhhhHHHHHHHHHh
Q 005975 361 LVHNFRVDNSLLEKRGALIIRRLC 384 (666)
Q Consensus 361 LL~lf~~d~~lLe~Rg~~IIR~Lc 384 (666)
++....+....--.-|.++.-.+.
T Consensus 412 llp~~~nst~Nsl~ag~l~~~~l~ 435 (970)
T KOG0946|consen 412 LLPSSTNSTSNSLSAGQLLLVGLS 435 (970)
T ss_pred HhhhhccccccchhhhhHHHHhhc
Confidence 888775553311223555444333
No 244
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.57 E-value=20 Score=33.76 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCCh--h--HHHHHHHHHHHHHHHh
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSH--E--IRQQADSALWEFLQEI 186 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD~~~--e--VR~~A~~~L~~fL~eI 186 (666)
..-+-.|..|+...||.+...++.-+..+.+-.|..+...+ .+|++.|.+++.++.. . ||+.+...+...-..+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999888877665443 5688899888876433 2 8999988888888888
Q ss_pred hc
Q 005975 187 KN 188 (666)
Q Consensus 187 ~~ 188 (666)
+.
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 245
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.50 E-value=88 Score=34.66 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=68.4
Q ss_pred chHHHHHHHHH-hcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHH----HHHHHH-hcC--CCCHHHHHHHHHHHHHH
Q 005975 152 FLPDFLDGLFN-MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM----AEILVQ-RAA--SPDEFTRLTAITWINEF 223 (666)
Q Consensus 152 yLp~fL~gLf~-lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~i----I~iLl~-~~~--s~d~~irl~Al~WL~~~ 223 (666)
.+..+.+.+.. +++|+ ++||.++-.++.-++..-.. +..+ +++++- ++. ..++..|..|+.-++.|
T Consensus 22 ~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~-----l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~ 95 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEES-----LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAF 95 (371)
T ss_pred hHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHH-----HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHH
Confidence 34455555554 45555 99999998888777642211 1111 122222 222 23467899999999999
Q ss_pred HHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Q 005975 224 VKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (666)
Q Consensus 224 i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (666)
+++.+. .-.+-..++.++.....++++..|.+|-++.-++.
T Consensus 96 l~~~~~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~ 136 (371)
T PF14664_consen 96 LEIKKG-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELA 136 (371)
T ss_pred HHhcCC-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 999431 12234567788888888888899998888766553
No 246
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=77.82 E-value=6.4 Score=35.74 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC
Q 005975 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 209 d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (666)
..+-|..++.-|.+++++.+..+..+.|+|...+..++. .+|.|..|-+|-..+.+.+.+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 456788999999999999998888999999988888886 567999999998888877654
No 247
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=77.35 E-value=47 Score=41.11 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=82.6
Q ss_pred hcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005975 226 LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST 305 (666)
Q Consensus 226 l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~ 305 (666)
.-|.++.+|+..++-.++|.|.++..|--........++.+...+ +.+-.+.+..++. .++..|-.++.|+..
T Consensus 135 ~Lg~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl~k~L~d--~~~fw~~~w~ill-----~~~~~R~g~l~~l~r 207 (1618)
T COG5221 135 PLGKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIITLFKSLID--PDVFWSSMWGILL-----NDERLRTGVLNSLMR 207 (1618)
T ss_pred ecCccHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHh-----cCccccchHHHHHHH
Confidence 346889999999999999999987766555555555666666544 2233455555543 245568888888876
Q ss_pred HHhhC-----hH-HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 306 LLNRH-----RT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 306 L~~~~-----p~-~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
-.... .+ -+.||-.-++-++..+|+|++-.|++..+.+|-.+=
T Consensus 208 eeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDlLl~~f 256 (1618)
T COG5221 208 EENNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDLLLFVF 256 (1618)
T ss_pred HhcCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHHHHHHc
Confidence 33321 12 367888889999999999988889998888776655
No 248
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.32 E-value=1.3e+02 Score=39.07 Aligned_cols=155 Identities=18% Similarity=0.095 Sum_probs=94.9
Q ss_pred cHhhhHHHHHH-hhcCCCHHHHHHHHHHHHHhh-cCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 111 SIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLD-SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 111 ~L~~fIPlL~e-ri~~~np~vR~~alswL~~L~-svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
-.+.|+-.+.. -....++.+|...++.+..+. +..-...-....++-.-++..+.|...+||+.|..||..|++.=+-
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 35666666663 233467899998888777432 1111122345568888999999999999999999999999863321
Q ss_pred CCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHH
Q 005975 189 SPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (666)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~--d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (666)
...++.........+++ ++...--|...++.++-..|-.+=-|+|+.|..+-....++ .-|+.++.++..++-+
T Consensus 1603 ---~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1603 ---QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred ---ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHH
Confidence 11123333333333332 33344556666666776555554335666665555444444 5688888888777765
Q ss_pred hhC
Q 005975 267 IKA 269 (666)
Q Consensus 267 ~i~ 269 (666)
.-.
T Consensus 1679 th~ 1681 (1710)
T KOG1851|consen 1679 THA 1681 (1710)
T ss_pred Hhh
Confidence 543
No 249
>PF14750 INTS2: Integrator complex subunit 2
Probab=77.20 E-value=2.1e+02 Score=36.15 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=61.1
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHH--HHHHHHHhh--Ch-------HHHh---hhhH---HHHHHHHHhcCCC--CHHHHH
Q 005975 278 GPILSIATRQLSSEWEATRIEAL--HWISTLLNR--HR-------TEVL---HFLN---DIFDTLLKALSDP--SDEVVL 338 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL--~WL~~L~~~--~p-------~~i~---~~l~---~l~p~LL~~LsD~--s~eVv~ 338 (666)
+.+-+-+...|+.+++..|..-. +|+..+... .. .+++ -|++ .+++.++..|-+- -.+|+.
T Consensus 90 ~~~~~~~~~~FE~~~~~~k~rlVlsELl~l~~~~~~~~~~~~~~~s~lfd~~iy~eEv~~il~i~~~~lPslL~i~~v~~ 169 (1049)
T PF14750_consen 90 ESLQNGIALEFERSDPARKLRLVLSELLALMSQVSKSNDESSLKSSELFDNEIYLEEVSDILCIAQAELPSLLPIEEVVE 169 (1049)
T ss_pred hhcccccccccccCchhhHHHHHHHHHHHHHHHHHhcccccccCcchhhcccccHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 34444555666666655555444 444444442 11 1221 1233 3455555555432 245555
Q ss_pred HHH------HHHHHHh-hccchHHHHHHHHHhhcc--ccchhhhhHHHHHHHHHhccCCh
Q 005975 339 LVL------EVHACIA-KDLQHFRQLVVFLVHNFR--VDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 339 ~~l------~lLa~Is-~~~~~F~~fm~~LL~lf~--~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
.-+ +++.++. .+.+.|+.++..|+..-. ++....+.+-+.+++.||..=+.
T Consensus 170 aLL~v~nGp~li~~LvaN~Pd~f~~vv~~LI~~~e~~de~s~~gr~R~~~L~~L~~m~Ps 229 (1049)
T PF14750_consen 170 ALLHVPNGPWLICRLVANMPDSFEEVVNSLISNGERQDEESSRGRQRNETLRKLCKMNPS 229 (1049)
T ss_pred HHHcccccHHHHHHHHhcCchhHHHHHHHHHhccccccccccchHHHHHHHHHHHHhChH
Confidence 444 6777766 567889999999997541 22222233337899999986544
No 250
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.76 E-value=2.3e+02 Score=36.43 Aligned_cols=308 Identities=17% Similarity=0.184 Sum_probs=178.1
Q ss_pred HHHHhhhhhhHHHhhhhhHHHHH---hhcCCCC--HHHH-HHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHhhcCC
Q 005975 16 FLLYADLFFYSETILQQIVPPVL---NSFSDQD--SRVR-YYACEALYNIAKVVR----GDFIIFFNQIFDALCKLSADS 85 (666)
Q Consensus 16 ~~~~~~~~~~~~~yl~~Il~pVL---~~~~D~d--~rVR-~~A~eaL~nI~Kv~r----~~il~~f~eIfd~L~kl~~D~ 85 (666)
+=+||--.++...++..|-.-++ .+++|+. +-.| +|-.|-|.++- .+- .+.-..+.++|.-.+.++.++
T Consensus 78 lRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~ 156 (1266)
T KOG1525|consen 78 LRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKG 156 (1266)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhcc
Confidence 33677777888888888776664 5567775 2234 44344443332 111 111234556666666666444
Q ss_pred -chhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH
Q 005975 86 -DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (666)
Q Consensus 86 -d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri----~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gL 160 (666)
...|-+ +--++-.+.+|.+..+. .++-.+...+ .+.++..+..+-+.|+.....-..++..++...+-+=
T Consensus 157 ~~~~v~~----~~~i~~~li~e~d~v~~-e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~ 231 (1266)
T KOG1525|consen 157 HPKKVFN----MLDIAIMLITEEDTVQS-ELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEY 231 (1266)
T ss_pred ccHHHHH----HHHHHHHHHHhhccchH-HHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhc
Confidence 334544 33344444555444333 3333333333 3455677777777776554433333333333332211
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHH
Q 005975 161 FNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 240 (666)
Q Consensus 161 f~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~ 240 (666)
.. .--.++..-.+.+-++-... .--+-.++|.|-.-+.+.++++|+.|..-++.+....+..+..=.+.+..
T Consensus 232 ~s----~~~~~~~~~he~i~~L~~~~----p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~ 303 (1266)
T KOG1525|consen 232 KS----RQSSLKIKYHELILELWRIA----PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWS 303 (1266)
T ss_pred cc----cccchhhHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHH
Confidence 11 11122222222222222111 01246789999999999999999999999999988877777666788999
Q ss_pred HHhhhhcCCcHHHHHHHHHHHHHHHHh-------------hC----CCC--------------CCC--Ch-HhHHHHHHH
Q 005975 241 AILPCISDKEEKIRVVARETNEELRAI-------------KA----DPA--------------DGF--DV-GPILSIATR 286 (666)
Q Consensus 241 ~LL~~Lsd~~~eIR~~A~~~n~~L~~~-------------i~----~~~--------------~~~--dl-~~il~~L~~ 286 (666)
+.+.-+.|-..++|-.+.+.-...+-. +. |+. ..+ .+ ..+++.+.+
T Consensus 304 ~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~e 383 (1266)
T KOG1525|consen 304 AFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAE 383 (1266)
T ss_pred HHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHH
Confidence 999999999999998877654322110 00 100 001 11 238889999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhh-------ChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 005975 287 QLSSEWEATRIEALHWISTLLNR-------HRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 287 ~L~~~~~~tR~aaL~WL~~L~~~-------~p~~i~~~l~~l~p~LL~~LsD~s~eVv 337 (666)
.+.|..+.+|..|+.=+-.++++ ...++.+-++.+-..||..+.+.+-+-+
T Consensus 384 R~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 384 RLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99999999999999999999996 1233445555555556666655543333
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.71 E-value=37 Score=32.33 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc--hHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y--Lp~fL~gLf~lLs-D~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
+-.|..|+...||.+-..++.-+..+.+-.|..+... =-+|++.|.+++. .+++.||+.+..++..-...++..
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3445678888999999999999998888777655332 2567888888886 477899999999998888888654
No 252
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.21 E-value=4 Score=41.48 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--
Q 005975 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-- 349 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-- 349 (666)
.+.+||...++.....+..-+-+.|--|-+=+..|....++++.+-++++++.|=..|...+.||+..++.+|.+++-
T Consensus 107 pe~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 107 PEKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred HHhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 345788999999888887766677888888888888888899999999999999999999999999999999999882
Q ss_pred --ccchHHHHHHHHHhhcc
Q 005975 350 --DLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 350 --~~~~F~~fm~~LL~lf~ 366 (666)
-..-+.+|-..||..+.
T Consensus 187 ~~vG~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVLN 205 (262)
T ss_pred cccchhhhhHHHHhhhhhh
Confidence 13455666666665543
No 253
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=76.16 E-value=10 Score=37.75 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=68.7
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e 106 (666)
+.+...++..+++.-.++-.|||..|+.++..+.. ....-.++++ =.+.|.+.+...... .
T Consensus 2 ~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~-~~~~~~~~ip-~~~~L~~i~~~~~~~-----------------~ 62 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLH-SQDPTIPHIP-HREELQDIFPSESEA-----------------S 62 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccccCCC-cHHHHHHHccccccc-----------------c
Confidence 34567788888888889999999999999888762 1111111111 112222222211110 0
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
.+..+-....|.+...+. +-.|-..++.||+--.+.-+.++.+.+..+|-+++.+.
T Consensus 63 ~~w~~~~~~F~~l~~LL~------------------------~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~ 118 (193)
T PF12612_consen 63 LNWSSSSEYFPRLVKLLD------------------------LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL 118 (193)
T ss_pred cccCCHHHHHHHHHHHhc------------------------cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 001111111232222111 12677889999999999999998888889999998765
No 254
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=75.72 E-value=1.4e+02 Score=33.47 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=134.6
Q ss_pred HHHHHHhhcCCchhHHH-HHHHHHHHHHHhhcccccccHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005975 75 FDALCKLSADSDANVQS-AAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGF 152 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~-gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~~Li~y 152 (666)
+....+++.+.+.-..+ ++..++.+.+---...+--.++.+...|.+.+.. .+++.+++++.++..+..++..-..-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 44556777777776665 6666666655322222233467777777777776 789999999999998887776433222
Q ss_pred hHHHHHHHHHhcCC--CChhHHHHHHHHHHHHH------HHhhcCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Q 005975 153 LPDFLDGLFNMLSD--SSHEIRQQADSALWEFL------QEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEF 223 (666)
Q Consensus 153 Lp~fL~gLf~lLsD--~~~eVR~~A~~~L~~fL------~eI~~~~~~d~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~ 223 (666)
.-+=..-+...+.. .+-.+.=..+-|+--+. +.++ .-++|+.|..-+++. -|-+=+.++..+.++
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~------~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK------RFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111 11112222222222221 1110 112233333222221 122323345555555
Q ss_pred HHhcCcc----------cccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCC-------------------C---
Q 005975 224 VKLGGDQ----------LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-------------------P--- 271 (666)
Q Consensus 224 i~l~~~~----------l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~-------------------~--- 271 (666)
++-+++. +..-+|+.+..+.. =.++|++++.--...-+.|-..+.+ +
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~-rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEE-RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence 5554311 11123333333222 2467777665444333333222221 0
Q ss_pred CCC--------C--ChHhHHHHHHHhcCCCcHHH--HHHHHHHHHHHHhhChHHHh--hhhHHHHHHHHHhcCCCCHHHH
Q 005975 272 ADG--------F--DVGPILSIATRQLSSEWEAT--RIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 272 ~~~--------~--dl~~il~~L~~~L~~~~~~t--R~aaL~WL~~L~~~~p~~i~--~~l~~l~p~LL~~LsD~s~eVv 337 (666)
.++ + |=-+++.+|.+.|+.++.+. .+|| .=++++.+.+|++-. ..+ +-=..+++.++.++|+|+
T Consensus 349 ~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc-~DIge~Vr~yP~gk~vv~k~-ggKe~vM~Llnh~d~~Vr 426 (442)
T KOG2759|consen 349 SEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVAC-HDIGEYVRHYPEGKAVVEKY-GGKERVMNLLNHEDPEVR 426 (442)
T ss_pred ccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhh-hhHHHHHHhCchHhHHHHHh-chHHHHHHHhcCCCchHH
Confidence 000 1 11378899999998666443 3333 458899999988643 222 123467788999999999
Q ss_pred HHHHHHHHHH
Q 005975 338 LLVLEVHACI 347 (666)
Q Consensus 338 ~~~l~lLa~I 347 (666)
-.|+...-++
T Consensus 427 y~ALlavQ~l 436 (442)
T KOG2759|consen 427 YHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHH
Confidence 9998766554
No 255
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.72 E-value=1.2e+02 Score=32.74 Aligned_cols=200 Identities=18% Similarity=0.229 Sum_probs=110.0
Q ss_pred hhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 141 LDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI 220 (666)
Q Consensus 141 L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL 220 (666)
.....+......++..|..+++.++.... .+..+..+...+++ +=++.+..++.+..+.+...|+.-+
T Consensus 13 ~~~~n~~~~~~~~~~~L~~~l~~ls~~~~-~~~~g~~l~~~iL~-----------~~~k~lyr~L~~~~~~~~~~~LrLL 80 (330)
T PF11707_consen 13 AAQVNNHSLLSLVSSVLALLLKKLSSDLS-FQSYGLELIRSILQ-----------NHLKLLYRSLSSSKPSLTNPALRLL 80 (330)
T ss_pred hcCCCChhhHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHH-----------HHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 44444445556666666666655554433 55444444444443 1266777777777766666777777
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc---CC------C
Q 005975 221 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL---SS------E 291 (666)
Q Consensus 221 ~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L---~~------~ 291 (666)
.+++...+..+ ...++..+..+ +..+-..+...- .+ .
T Consensus 81 ~~iv~f~~g~~-------a~~v~~~fd~~---------------------------~~~l~kll~~~~~~~~~~~~~~~~ 126 (330)
T PF11707_consen 81 TAIVSFDGGAL-------AREVLRSFDFS---------------------------LKSLPKLLTPRKKEKEKDSESSKS 126 (330)
T ss_pred HHHHccCCHHH-------HHHHHHhcCCc---------------------------hhhHHHHhcccccccccccccccc
Confidence 77766333111 11111111110 011111111000 00 0
Q ss_pred cHHHHHHHHHHHHHHHhhChHHHh-hhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hc--------cchHH-HHH
Q 005975 292 WEATRIEALHWISTLLNRHRTEVL-HFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIA-KD--------LQHFR-QLV 358 (666)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~~p~~i~-~~l~--~l~p~LL~~LsD~s~eVv~~~l~lLa~Is-~~--------~~~F~-~fm 358 (666)
...+|-+.++.+..+....+..+. ..+. +++..+++.|.+++++++...+++|..-. .+ -..|. .++
T Consensus 127 ~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L 206 (330)
T PF11707_consen 127 KPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTL 206 (330)
T ss_pred CcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHH
Confidence 027899999977777777655433 3332 35899999999999999999999888644 22 23343 478
Q ss_pred HHHHhhccccch----hhhhHHHHHHHHHhcc
Q 005975 359 VFLVHNFRVDNS----LLEKRGALIIRRLCVL 386 (666)
Q Consensus 359 ~~LL~lf~~d~~----lLe~Rg~~IIR~Lc~~ 386 (666)
..|..++..+.. -+.+...-....+|..
T Consensus 207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 207 SQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 888887766544 3333334455555543
No 256
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=75.56 E-value=49 Score=42.94 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=84.7
Q ss_pred cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005975 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (666)
Q Consensus 227 ~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L 306 (666)
.+..+..|+|.++...-.+|...++.++..+......+..... ...-.+|+..|..+..+.+...--+||.-|..+
T Consensus 425 ~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L 500 (1426)
T PF14631_consen 425 HSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCEL 500 (1426)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999998887776655431 111268999888888666666667999999999
Q ss_pred HhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 307 LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 307 ~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+...++.+.+|...+-+ +|..+.+=+..=+.+...+|+.++
T Consensus 501 ~~~~~~~l~~fa~~l~g-iLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 501 AEKNPSELQPFATFLKG-ILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HHH-HHHHHHTHHHHHG-GGGGGGG--HHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999999988654443 557776655544555677777776
No 257
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.39 E-value=1.9e+02 Score=37.56 Aligned_cols=77 Identities=10% Similarity=0.240 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
|+.+++..++....+...-+|..|+.-+..+...-|+...+.+|+++|.|-..|.|.++++...+++.-..+-+..+
T Consensus 1538 d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1538 DLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred hhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 48899999999999888999999999999999999999999999999999999999999999888886655544444
No 258
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.96 E-value=1.2e+02 Score=39.03 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=103.7
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccc-
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESD- 108 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~- 108 (666)
+++-...+.++..|.+..||...-..++++...++..+.+|...+.+...-...|.+..|-.+|.. -.+|...+.-
T Consensus 81 l~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~---sf~~~f~~ek~ 157 (1312)
T KOG0803|consen 81 LPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKA---SFKDGFAEEKD 157 (1312)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHH---HHHhhcChhhh
Confidence 444445556778899999999999999999888888888999999999888889999888777721 1222222110
Q ss_pred ----cccHhhhHHHHHHh-------------------hcCCCHHH-HHHHHHHHHHh-hcCCchhhh---hchHHH--HH
Q 005975 109 ----QFSIEEFIPLLRER-------------------MNVLNPYV-RQFLVGWITVL-DSVPDIDML---GFLPDF--LD 158 (666)
Q Consensus 109 ----~f~L~~fIPlL~er-------------------i~~~np~v-R~~alswL~~L-~svp~~~Li---~yLp~f--L~ 158 (666)
...-+.+.+.+.+- ....-+++ +..++..+..+ ..-+..++. .-+-.| -+
T Consensus 158 ~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~ 237 (1312)
T KOG0803|consen 158 RHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSE 237 (1312)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHH
Confidence 00011112222221 11111222 22222333322 111222222 112222 23
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCCCC
Q 005975 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPD 209 (666)
Q Consensus 159 gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~~s~d 209 (666)
...+++.+..+.||.+.-+++-.+++.|... ...+-..+.+.++....+.+
T Consensus 238 ~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 238 KFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence 3468899999999999999999999988764 12233445555555555555
No 259
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=74.95 E-value=23 Score=41.83 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=82.0
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhh
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
+...+.|+|-+.+++.|.|.++...+...+..+++....... -+-|++.|.++.- -....||..+ .++..+++
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--- 458 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--- 458 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence 557889999999999999999999999888888876543222 2467777776642 3445666655 55555553
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCc
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD-SVPD 146 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~-svp~ 146 (666)
..+.+.+-..++.+.+++.+.+|.+....+.....+. ..++
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 3345566667777889999999999988887776543 3444
No 260
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=74.72 E-value=2e+02 Score=34.70 Aligned_cols=291 Identities=14% Similarity=0.151 Sum_probs=154.2
Q ss_pred hHHHHH-HHHHHHHHHhhcccccc--cHhh-hHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHH
Q 005975 88 NVQSAA-HLLDRLVKDIVTESDQF--SIEE-FIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFN 162 (666)
Q Consensus 88 ~Vr~gA-~~LdrLlKDIv~e~~~f--~L~~-fIPlL~eri~~~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~ 162 (666)
.-.+|| ..++. ++++.++...+ -+++ ++|.+...++++-=+.|.-+|..++.+.. .++. ..+-+.+++..+
T Consensus 431 rq~egalr~las-i~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~n 506 (970)
T COG5656 431 RQAEGALRLLAS-IKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHN 506 (970)
T ss_pred HHHhhHHHHHHH-HHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHH
Confidence 345566 34444 45566653211 1222 23444445566666888889999987721 2222 245677888999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHH
Q 005975 163 MLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 240 (666)
Q Consensus 163 lLsD~~~eVR~~A~~~L~~fL~eI~~~~--~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~ 240 (666)
++.|++.-|+-.|.-+|.-|+..-..++ ..+.+.+++.|+.--+.-+-++--. -+..|++-.++.+-||-|++..
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~---vMe~fVe~fseELspfa~eLa~ 583 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM---VMESFVEYFSEELSPFAPELAG 583 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHH---HHHHHHHHhHHhhchhHHHHHH
Confidence 9999999999999888888875442221 1245666666666544433332222 3556777778899999998887
Q ss_pred HHhh----h----hcCC-----cHHHHHH-HHHHHHHHHHhhCCCCCCCC-----hHhHHHHHHHhcCCCcHHHHHHHHH
Q 005975 241 AILP----C----ISDK-----EEKIRVV-ARETNEELRAIKADPADGFD-----VGPILSIATRQLSSEWEATRIEALH 301 (666)
Q Consensus 241 ~LL~----~----Lsd~-----~~eIR~~-A~~~n~~L~~~i~~~~~~~d-----l~~il~~L~~~L~~~~~~tR~aaL~ 301 (666)
.+.. . +..+ .-+=+++ |.....++-..+-.-.+..+ .....+++.=-+.++..+.= .
T Consensus 584 ~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy----~ 659 (970)
T COG5656 584 SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFY----Q 659 (970)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHH----H
Confidence 6554 1 1111 1111222 22333333333222111111 01222333333333322221 2
Q ss_pred HHHHHHhhC---hHHHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHh-------hccchHHHHHHHHHhh-ccccc
Q 005975 302 WISTLLNRH---RTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIA-------KDLQHFRQLVVFLVHN-FRVDN 369 (666)
Q Consensus 302 WL~~L~~~~---p~~i~~~l~~l~p~LL~~LsD~s~-eVv~~~l~lLa~Is-------~~~~~F~~fm~~LL~l-f~~d~ 369 (666)
-...+.+++ ..++.|-..+++..+.+.+.|+.. .-.+...-.+..|- .+.+.+-+.+..+.+. +.++.
T Consensus 660 Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~ 739 (970)
T COG5656 660 EALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEE 739 (970)
T ss_pred HHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchh
Confidence 223334442 456778888999999999988875 32344444555554 1234555666666553 34444
Q ss_pred hhhhhHH-HH-HHHHHhccCCh
Q 005975 370 SLLEKRG-AL-IIRRLCVLLDA 389 (666)
Q Consensus 370 ~lLe~Rg-~~-IIR~Lc~~L~~ 389 (666)
.-|+.+. .. |+.-+-..++.
T Consensus 740 n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 740 NFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHccc
Confidence 4444432 11 45555555544
No 261
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.25 E-value=1.8e+02 Score=33.85 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHHHHHHhhcCC-CCC---HHHHHHHHHHhcC----CCCHHHHHHHHHHHHH
Q 005975 155 DFLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNSP-SVD---YGRMAEILVQRAA----SPDEFTRLTAITWINE 222 (666)
Q Consensus 155 ~fL~gLf~lLsD----~~~eVR~~A~~~L~~fL~eI~~~~-~~d---~~~iI~iLl~~~~----s~d~~irl~Al~WL~~ 222 (666)
+.++.++.++.+ +.+.+|..|.-+++.++...-... ... ...+++++...+. ..|+..+..++..|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG- 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG- 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-
Confidence 445666666655 356789988888888887442222 111 3566676665443 345555555555554
Q ss_pred HHHhcCcccccchHhHHHHHhhhhc-CC--cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC--CcHHHHH
Q 005975 223 FVKLGGDQLVPYYADILGAILPCIS-DK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRI 297 (666)
Q Consensus 223 ~i~l~~~~l~pylp~lL~~LL~~Ls-d~--~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tR~ 297 (666)
.++ .|..++.+.+.+. +. ...+|..|..+...+.+... ..+-+++...+.+ ++.+.|+
T Consensus 472 --N~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 472 --NAG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred --ccC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChHHHH
Confidence 222 3555555665554 33 46799999888765543222 4566666666653 5577899
Q ss_pred HHHHHHH
Q 005975 298 EALHWIS 304 (666)
Q Consensus 298 aaL~WL~ 304 (666)
+|..-+.
T Consensus 535 aA~~~lm 541 (574)
T smart00638 535 AAVLVLM 541 (574)
T ss_pred HHHHHHH
Confidence 9876443
No 262
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=74.06 E-value=74 Score=30.19 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchH--HHHHH-HHHhcCC---CChhHHHHHHHHHHHHHHHhhc
Q 005975 116 IPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSD---SSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 116 IPlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp--~fL~g-Lf~lLsD---~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
+-.|..|+. ..||.+-.+++.-+..+.+-.|..+...+- +|++. |.+++++ ++.+|++.+.+.+...-..++.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 344566776 479999999999999998888876654332 67776 7777764 4568999999999999888866
Q ss_pred CC
Q 005975 189 SP 190 (666)
Q Consensus 189 ~~ 190 (666)
.+
T Consensus 120 ~~ 121 (141)
T cd03565 120 SP 121 (141)
T ss_pred Cc
Confidence 44
No 263
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.04 E-value=28 Score=34.52 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=93.0
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH
Q 005975 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (666)
Q Consensus 163 lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~L 242 (666)
+++=+.|++|+.|.. +.++.+. + +...........++..+.|..|+..+...... +-+..++.+
T Consensus 27 ~~GV~~p~lr~lak~----~~~~~~~----~-~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~-------~~~~~~~~~ 90 (213)
T PF08713_consen 27 FLGVRTPDLRKLAKD----IYKELKL----S-EELYELADELWESGYREERYLALLILDKRRKK-------LTEEDLELL 90 (213)
T ss_dssp -----HHHHHHHHHH----HHHHHCT----S-HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHH
T ss_pred ccCcCcHHHHHHHHH----HHhhccc----c-hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhh-------hhHHHHHHH
Confidence 444455666666532 2333322 2 44455555556777788888888777532211 222344444
Q ss_pred hhhhcCC-cHHHHHHH-HHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 005975 243 LPCISDK-EEKIRVVA-RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (666)
Q Consensus 243 L~~Lsd~-~~eIR~~A-~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~ 320 (666)
...+.+- +=++-+.. .++.+.+... .....+.+.+-..|++.-+|-+++.-+...... .+.+.
T Consensus 91 ~~~~~~~~~W~~~D~~~~~~~~~~~~~---------~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~ 155 (213)
T PF08713_consen 91 EKWLPDIDNWATCDSLCSKLLGPLLKK---------HPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDE 155 (213)
T ss_dssp HHCCCCCCCHHHHHHHTHHHHHHHHHH---------HGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHH
T ss_pred HHHhccCCcchhhhHHHHHHHHHHHHh---------hHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHH
Confidence 4444432 22333222 3333222111 145677777888888877777776544444333 66778
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchHHHHHHH
Q 005975 321 IFDTLLKALSDPSDEVVLLVLEVHACIAKD-LQHFRQLVVF 360 (666)
Q Consensus 321 l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-~~~F~~fm~~ 360 (666)
++..+-..+.|++..|+...-|+|..++.. .+.-..|+..
T Consensus 156 ~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 156 LLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 888888888999999999999999999953 3333344444
No 264
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=72.97 E-value=15 Score=33.41 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=54.9
Q ss_pred HhcCCCC--h--hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHhcCcccccchH
Q 005975 162 NMLSDSS--H--EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGDQLVPYYA 236 (666)
Q Consensus 162 ~lLsD~~--~--eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~-WL~~~i~l~~~~l~pylp 236 (666)
..+.|++ + .-|+.+-.+++.+++..+.....-.++|+-.|...+. .++.|..|+. |-.-+..+.++++.|.+.
T Consensus 18 ~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~ 95 (107)
T smart00802 18 NILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLD 95 (107)
T ss_pred HHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455554 3 4488888999999886543211223444444444444 5678999988 665555567788888888
Q ss_pred hHHHHHhhhh
Q 005975 237 DILGAILPCI 246 (666)
Q Consensus 237 ~lL~~LL~~L 246 (666)
.++..+++..
T Consensus 96 ~~~~~i~~~~ 105 (107)
T smart00802 96 QIFAAILPLW 105 (107)
T ss_pred HHHHHHHHhc
Confidence 8888888764
No 265
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=72.81 E-value=1.7e+02 Score=32.87 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=131.2
Q ss_pred hhh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHh
Q 005975 29 ILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (666)
Q Consensus 29 yl~-~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~---r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDI 103 (666)
|++ ..+..++..|..+|+|-|.+...-+.+|-... |..+. ..+-+.+.+.+.+++.. +|. ++| .++..|
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir---~~i~~~~~~fi~e~~~~--~gI~elL-eil~si 202 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR---KSINNIFYRFIYETERH--NGIAELL-EILGSI 202 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH---HHHHHHHHHHHHTTS----STHHHHH-HHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhcCcccc--cCHHHHH-HHHHHH
Confidence 554 57788999999999999999999998885432 22332 33333444444433321 122 221 112222
Q ss_pred hcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 104 v~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
+..- -.++ .+.-+.++...+--|. -..+++.|.+.|. .|+..|+
T Consensus 203 i~gf--------~~pl-------k~eh~~fl~~vllPLh------~~~~~~~y~~~L~---------------~~~~~f~ 246 (409)
T PF01603_consen 203 INGF--------AVPL-------KEEHKQFLRKVLLPLH------KSPHLSSYHQQLS---------------YCVVQFL 246 (409)
T ss_dssp HTT----------SS---------HHHHHHHHHTTGGGG------GSTGGGGTHHHHH---------------HHHHHHH
T ss_pred Hhcc--------CCCC-------cHHHHHHHHHHHHHHh------cCCcHHHHHHHHH---------------HHHHHHH
Confidence 2210 0000 1122222222221122 2234444444443 3444444
Q ss_pred HHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHH--
Q 005975 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARET-- 260 (666)
Q Consensus 184 ~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l-~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~-- 260 (666)
+.= .--...++..|+.+--..+..-...-+.=+.+++.. ++..+.+....+...+-.|++.++..|-+.|...
T Consensus 247 ~kd----p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 247 EKD----PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HH-----GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HhC----chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 311 011355667777776666666555556666666664 4566778888888999999999998877777653
Q ss_pred HHHHHHhhCCCCCCCChHhHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhChHHHhh
Q 005975 261 NEELRAIKADPADGFDVGPILSIATRQL-----SSEWEATRIEALHWISTLLNRHRTEVLH 316 (666)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L-----~~~~~~tR~aaL~WL~~L~~~~p~~i~~ 316 (666)
|+.+...+.+ +-..+++++...+ .+++..+|..|..-+..+.+..|+-+..
T Consensus 323 n~~~~~li~~-----~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 323 NEYFLSLISQ-----NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp SHHHHHHHHC-----THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred CHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4566666643 1244555555443 3678889999999999999888765554
No 266
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=71.94 E-value=21 Score=38.21 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=83.2
Q ss_pred hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Q 005975 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP------DEFTRLTAITWIN 221 (666)
Q Consensus 148 ~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~------d~~irl~Al~WL~ 221 (666)
++..|++.+...| +..++.+.|.+|-++| .+ +..+..++|+.+.++..+ +-+.-.+.+....
T Consensus 194 ELq~YF~kvisal---~dEs~~~~r~aAl~sL-------r~--dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~ 261 (450)
T COG5095 194 ELQMYFDKVISAL---LDESDEQTRDAALESL-------RN--DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYS 261 (450)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHh-------cc--CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455555555544 3446777888874433 23 334677788777776532 2222233444444
Q ss_pred HHHHhcCcccccchHhHHHHHhhhhcC------Cc----HHHHHHHHHHHHHHHHhhCCCCCCCCh-HhHHHHHHHhcCC
Q 005975 222 EFVKLGGDQLVPYYADILGAILPCISD------KE----EKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSS 290 (666)
Q Consensus 222 ~~i~l~~~~l~pylp~lL~~LL~~Lsd------~~----~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~ 290 (666)
.+++-..--+-||+.+++|.|+.|+.- ++ -.+|+.|+...+...+-... .-.-+ ..+...+.+.+.|
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~--~YktLkPRvtrTllKafLD 339 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS--SYKTLKPRVTRTLLKAFLD 339 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH--hhhhhchHHHHHHHHHHHh
Confidence 444444444579999999999998842 11 13788877665544332211 00001 3555555555543
Q ss_pred C--cHHHHHHHHHHHHHHHhhC
Q 005975 291 E--WEATRIEALHWISTLLNRH 310 (666)
Q Consensus 291 ~--~~~tR~aaL~WL~~L~~~~ 310 (666)
. ...|...|+.-+..+-...
T Consensus 340 ~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 340 REKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred cccccchhhhhhhhhhhhchhh
Confidence 2 2557777877776665544
No 267
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=71.29 E-value=1.3e+02 Score=32.79 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=44.5
Q ss_pred hHHHHHHHhcCCCcHHH--HHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005975 279 PILSIATRQLSSEWEAT--RIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACI 347 (666)
Q Consensus 279 ~il~~L~~~L~~~~~~t--R~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~s~eVv~~~l~lLa~I 347 (666)
+++..|.+.++..+..+ .+ |..=+.++.+..|+...=... +.-..++..+++++++|+-.|++.+..+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~v-Ac~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICV-ACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEee-eHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 67778888887654443 33 334577788888775431111 2334577888999999999998876544
No 268
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.23 E-value=1.9e+02 Score=32.90 Aligned_cols=274 Identities=15% Similarity=0.080 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC-chhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHh
Q 005975 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER 122 (666)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~-d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~er 122 (666)
.-..|-.|.+.+...++..+- .-..+||..-..++... ..++|.+| ++|.++++.--..++ ..--.+...
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-----~~R~~fF~~ 74 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-----LMRAEFFRD 74 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHH
Confidence 345677777777666554332 44567888888887655 45789988 787777662111000 000111111
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhH---HHH-----------------HHHHHHH
Q 005975 123 MN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEI---RQQ-----------------ADSALWE 181 (666)
Q Consensus 123 i~-~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eV---R~~-----------------A~~~L~~ 181 (666)
+. ..++..=-.-+.++..|.+- |-++..+-.++.+-|..++.+.-..+ |.. -...+..
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~-Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDN-GRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcC-CcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 11 12222222334455544321 22222233333333333332111000 000 1223334
Q ss_pred HHHHhhc----CC-CC---CHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHH
Q 005975 182 FLQEIKN----SP-SV---DYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEK 252 (666)
Q Consensus 182 fL~eI~~----~~-~~---d~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~e 252 (666)
+++-+.+ .. .. ++..++..+..-|..+ ++..=..++.-++.++..+. .=-.-++.++..|....... +
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~~~--~ 230 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD-IPSESLSPCIEVLCSIVNSV--S 230 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhccc--c
Confidence 4433322 21 12 3567777777766544 33322456666666555321 11123566666666553332 6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--C----CcHHHHHHHHHHHHHHHhhChHHHhhh--hH--HHH
Q 005975 253 IRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--S----EWEATRIEALHWISTLLNRHRTEVLHF--LN--DIF 322 (666)
Q Consensus 253 IR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~----~~~~tR~aaL~WL~~L~~~~p~~i~~~--l~--~l~ 322 (666)
..+.+.++...|.+.-. -..++..|...+. + ++..+-..|+.-+.++.-+.+++-.+- .. .++
T Consensus 231 l~~~~w~~m~nL~~S~~-------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 231 LCKPSWRTMRNLLKSHL-------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred cchhHHHHHHHHHcCcc-------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 66777777666654321 1466677777772 2 233344578888888888875443332 22 488
Q ss_pred HHHHHhcCCCCHHHH
Q 005975 323 DTLLKALSDPSDEVV 337 (666)
Q Consensus 323 p~LL~~LsD~s~eVv 337 (666)
|.+...+.-.++.|-
T Consensus 304 ~sl~~al~~~~~~v~ 318 (464)
T PF11864_consen 304 PSLLNALKSNSPRVD 318 (464)
T ss_pred HHHHHHHhCCCCeeh
Confidence 888888886665443
No 269
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.22 E-value=1.2e+02 Score=33.38 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005975 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (666)
Q Consensus 71 f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~L 149 (666)
..++.++++-++.|.|-.|.-|- .. -.+.|+.+. -+..++..+...+ +|.+=.-++..+..+.- ..++
T Consensus 207 VRel~~a~r~l~~dDDiRV~fg~ah~---hAr~ia~e~---~l~~L~Eal~A~~---dp~~L~~l~~tl~~lAV--r~E~ 275 (461)
T KOG4199|consen 207 VRELYDAIRALLTDDDIRVVFGQAHG---HARTIAKEG---ILTALTEALQAGI---DPDSLVSLSTTLKALAV--RDEI 275 (461)
T ss_pred HHHHHHHHHHhcCCCceeeecchhhH---HHHHHHHhh---hHHHHHHHHHccC---CccHHHHHHHHHHHHHH--HHHH
Confidence 45666666666666666554332 22 223344332 2333444444333 35444444444443320 1111
Q ss_pred hhchHH--HHHHHHHhcCCC-ChhHHHHHHHHHHHHH
Q 005975 150 LGFLPD--FLDGLFNMLSDS-SHEIRQQADSALWEFL 183 (666)
Q Consensus 150 i~yLp~--fL~gLf~lLsD~-~~eVR~~A~~~L~~fL 183 (666)
-..+.+ =++.|+.++.|+ ...+|..+.+|+.-+-
T Consensus 276 C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 276 CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLR 312 (461)
T ss_pred HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHH
Confidence 111111 156788999995 4578877766665443
No 270
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=70.88 E-value=3.3e+02 Score=35.56 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHH--HHHHHHhhccccchhhhhHHHHHHHHHhccCChH---
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--- 390 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is----~~~~~F~~--fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E--- 390 (666)
..+..||.-|...+=-||..+|-+|..++ ++++++-+ -+.-|..++++.++....-..--+|+|-..-++.
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq~~ 609 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQAS 609 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhhhh
Confidence 35678888898888889999998877777 34556554 2333444555555444333344777777666442
Q ss_pred -----------HHHHHHHHhhcccCChHHHHHHHHH
Q 005975 391 -----------RVYRELSTILEGEADLDFACTMVQA 415 (666)
Q Consensus 391 -----------~Iy~~la~iL~~~~dl~F~~~mVq~ 415 (666)
..+......++.+-|.++.+-....
T Consensus 610 ~~~~~~g~svgsL~vrKqkale~eL~~rhsa~a~~~ 645 (2195)
T KOG2122|consen 610 HRLMSPGSSVGSLAVRKQKALEAELDARHSAEALDN 645 (2195)
T ss_pred hcccCccccccchhhhHHhhhccchhhhHHHHHhcc
Confidence 2333444444445566664433333
No 271
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.72 E-value=1.6e+02 Score=31.89 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH-hhcccccccH
Q 005975 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKD-IVTESDQFSI 112 (666)
Q Consensus 35 ~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i-l~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKD-Iv~e~~~f~L 112 (666)
..+..-+.|+++.||+.|.+.+.+..-. .+.+ ..+=...+..+.++..|.++ .+.||.+|-++..+ -+.+ .-+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~---~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRK---KLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHH---HHH
Confidence 3456667899999999998887776422 2222 24445778889999999988 56666555443221 1111 123
Q ss_pred hhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCch--hhhhchH----HHHHHHHHhcCCCChh
Q 005975 113 EEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDI--DMLGFLP----DFLDGLFNMLSDSSHE 170 (666)
Q Consensus 113 ~~fIPlL~eri~~~-np~vR~~alswL~~L~svp~~--~Li~yLp----~fL~gLf~lLsD~~~e 170 (666)
..|+-.+..+++++ +|-.+. +|-.+.++.+.++. .+...++ +-+..|++...|.+.+
T Consensus 81 ~~~~k~l~~~~~~p~~~lad~-~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n 144 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDPQSPLADL-ICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYN 144 (353)
T ss_pred HHHHHHHHHHhcCcccchHHH-HHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccc
Confidence 44777888888775 444443 44444455444432 2333344 4455566666666554
No 272
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=70.43 E-value=1.1e+02 Score=32.28 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCc
Q 005975 73 QIFDALCKLSADSD-----ANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPD 146 (666)
Q Consensus 73 eIfd~L~kl~~D~d-----~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~ 146 (666)
-.+|-++.-+.+++ +.+++.|+.|...+++ .+.-++..++-....+-+ +.+.++++ +.+.-.
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr~~~dfl~~--------v~~~l~ 178 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFRDKDDFLSQ--------VVSYLR 178 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCCCHHHHHHH--------HHHHHH
Confidence 44555555555555 6788888887777742 233356666666655544 22223333 322222
Q ss_pred hhhh-hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 005975 147 IDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (666)
Q Consensus 147 ~~Li-~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~ 225 (666)
..+. .|-...+.-|..++....+.+|..+-+.|..++..+..... .-.+++..++..++++- -..|++-+++.+.
T Consensus 179 ~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 179 EAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 2222 23344455567888888899999999999999987754322 55778888888887654 3446666777777
Q ss_pred hcCcc
Q 005975 226 LGGDQ 230 (666)
Q Consensus 226 l~~~~ 230 (666)
.++..
T Consensus 255 ~s~s~ 259 (262)
T PF14225_consen 255 RSGSP 259 (262)
T ss_pred hcccc
Confidence 76643
No 273
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.77 E-value=23 Score=31.09 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch--hHHHHH-HHHHHHHHHh
Q 005975 42 SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDI 103 (666)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~--~Vr~gA-~~LdrLlKDI 103 (666)
.|.++.+|.+|+.-|..|++.....--.--+.|+..+.+.+.|+.. .+.-|| ..|..+-.+.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998775543222346889999999987754 568888 6666654333
No 274
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=69.32 E-value=46 Score=30.27 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=49.2
Q ss_pred hHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC-HH-HHHHHHHHHHHHhhcc
Q 005975 277 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DE-VVLLVLEVHACIAKDL 351 (666)
Q Consensus 277 l~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~e-Vv~~~l~lLa~Is~~~ 351 (666)
+..++|.+.+.+. +...+.|.+|..-+..++.+. +.-++++..+++++.... +. ....++-+|..++..+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-----~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-----PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3578888888888 777889999999999999998 555666666665554322 11 1356777777777443
No 275
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=68.30 E-value=6.3 Score=28.04 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+.+|.|++.|..++++++..++|+|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788888888889999999999999886
No 276
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.96 E-value=63 Score=41.12 Aligned_cols=119 Identities=23% Similarity=0.185 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc-----cccHhhhHHHHH-HhhcC-CCH---HH-H---HHHH
Q 005975 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-----QFSIEEFIPLLR-ERMNV-LNP---YV-R---QFLV 135 (666)
Q Consensus 71 f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~-----~f~L~~fIPlL~-eri~~-~np---~v-R---~~al 135 (666)
|--++..|.+++.|.-+.||||| ..+=|++..-....+ .--...++|+|- .+++. .++ .+ + ++.+
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 55678888899999999999999 555554332221111 122566777776 12211 111 11 1 1122
Q ss_pred HHHHHhhcCCc---------hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 136 GWITVLDSVPD---------IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 136 swL~~L~svp~---------~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
--|.-+.++-+ .++..-..++|+-+.+..+|.++++..+|..++..++.++-..
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~ 1137 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEF 1137 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhh
Confidence 22222222211 1234445556666678899999999999999999999888553
No 277
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=67.09 E-value=87 Score=31.62 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=59.0
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
+..+-|.+.+.+.++..|.+.=+|+.|.-+.-.+.+ ..|++.+..++...+.+++.+|+...=-+++++.+-.+
T Consensus 109 ~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~------~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 109 LLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYKE------KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred HHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 355677777889999999999899988654333332 35778888888888888888888744445666666666
Q ss_pred cccccchH
Q 005975 229 DQLVPYYA 236 (666)
Q Consensus 229 ~~l~pylp 236 (666)
+.+..|+.
T Consensus 183 ~~V~~fl~ 190 (208)
T cd07064 183 DWVRDFVA 190 (208)
T ss_pred HHHHHHHH
Confidence 66666653
No 278
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.77 E-value=53 Score=31.38 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=59.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD-~s~eVv~~~l~lLa~Is 348 (666)
-...+.+|.+.+.+.+..+.+.||.-+-.+.+.|+..+...+. +.+..|.+.+++ ..+.|+.+.+.++..-+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999987764332 355666677777 67889999998877776
No 279
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=66.64 E-value=34 Score=29.61 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=51.3
Q ss_pred hhhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH
Q 005975 29 ILQQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (666)
Q Consensus 29 yl~~Il~pVL~~~-~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA 93 (666)
|-..++.|...-+ .-++..||....+++.+++......+-.-|+-+|..+-....|.+.++-.-|
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~a 79 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLA 79 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHH
Confidence 5566777777665 4468899999999999998876667778899999999988888776655545
No 280
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=66.50 E-value=4.1e+02 Score=34.91 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=87.6
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
+-.|+|.++.-.=.++.-+++.|+.-+......+-..+. ...-++++..|+.++.+..+..--.|+.-+..++...+
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 456888888877788888899999888665555544331 11126899999999877765444577887777788788
Q ss_pred cccccchHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005975 229 DQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (666)
Q Consensus 229 ~~l~pylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR 296 (666)
..+.|| ...+.++|..+. .+.++||....-. ..+.-.-.. ...---+++-=++.+++.+.+...+
T Consensus 506 ~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il-~~La~~~~~-~~s~i~del~ivIRKQLss~~~~~K 571 (1426)
T PF14631_consen 506 SELQPF-ATFLKGILDYLDNLSLQQIRKLFDIL-CTLAFSDSS-SSSSIQDELHIVIRKQLSSSNPKYK 571 (1426)
T ss_dssp HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHH-HHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHH-HHHhcCCcc-cchhhHHHHHHHHHHhhcCCcHHHH
Confidence 888888 455666677766 4568899875432 222111111 1111124555578889988886664
No 281
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.11 E-value=63 Score=28.68 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhHH--HHhhhhhh-HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHH
Q 005975 4 WYSFLFEIIVEQFL--LYADLFFY-SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDA 77 (666)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~-~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~---r~~il~~f~eIfd~ 77 (666)
++..+-|+...+.+ -+..+... ...+...++..++.|..|.+...|.+++..+..+.+.- ...+..-|.++++.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Confidence 34444555544444 22223221 23688889999999999999999999998888876431 23444567778887
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHH
Q 005975 78 LCKLSADSDANVQSAAHLLDRLVK 101 (666)
Q Consensus 78 L~kl~~D~d~~Vr~gA~~LdrLlK 101 (666)
+-.+.-|.......-|..+++++.
T Consensus 85 l~Dl~~D~P~~~~~la~~~~~~i~ 108 (113)
T PF02847_consen 85 LEDLELDIPKAPEYLAKFLARLIA 108 (113)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHH
Confidence 777777766666777777777654
No 282
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=65.70 E-value=6 Score=29.62 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHH
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEA 55 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~ea 55 (666)
+.+...|.++|.|+++.||.+|.+.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4788999999999999999999765
No 283
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=65.67 E-value=18 Score=35.57 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=35.7
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
+...-+.+|...+ .|+.||.+||+|+. +.++.++..|||.+++.|-
T Consensus 70 ~~~~aLeLL~~~f--~d~~VR~yAV~~L~---~~sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 70 KPEQALELLDCNF--PDEHVREFAVRCLE---KLSDDELLQYLLQLVQVLK 115 (171)
T ss_pred CHHHHHHHCCCcC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 3444555555544 56999999999987 5789999999999999774
No 284
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=65.31 E-value=24 Score=34.05 Aligned_cols=46 Identities=33% Similarity=0.557 Sum_probs=35.5
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gL 160 (666)
.+...-+.+|...+ .|+.||++||.++. +.++.++..|+|.+++.|
T Consensus 69 ~~~~~aL~LL~~~~--~~~~vr~yAv~~L~---~~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 69 LSPEDALELLSPKY--PDPVVRQYAVRVLE---SASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCHHHHHHHcCCcC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHH
Confidence 34455555655544 46999999999886 578889999999999977
No 285
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=65.23 E-value=89 Score=34.74 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=65.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCC
Q 005975 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPS 191 (666)
Q Consensus 115 fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~--yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~~ 191 (666)
.|-.|..|+...||.|-..+++.+..+.+-++.-|-. .=-+|-..|.++++| .++.|+......+.+..+++++.+.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence 3566788999999999999998888877777654432 223566777778874 6788998888889999999988776
Q ss_pred CC-HHHHHHHHHH
Q 005975 192 VD-YGRMAEILVQ 203 (666)
Q Consensus 192 ~d-~~~iI~iLl~ 203 (666)
.+ +..++..|..
T Consensus 126 lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 126 LSLISALYKKLKE 138 (462)
T ss_pred hhHHHHHHHHHHH
Confidence 65 3445554443
No 286
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.03 E-value=84 Score=29.88 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=56.6
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD------~s~eVv~~~l~lLa~Is 348 (666)
...+..+.+.+.+.+..+.+-||.-|-.+.+.|+..+...+. +.+..|++.+++ .++.|+.+.+.++..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999998865443 344566666653 56899999998876665
No 287
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.61 E-value=4.4e+02 Score=34.58 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=72.0
Q ss_pred ccchHhHHHHH-hhhhcCCc---HHH-HHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHH-hcCCCcHHHHHHHHHHHHH
Q 005975 232 VPYYADILGAI-LPCISDKE---EKI-RVVARETNEELRAIKADPADGFDVGPILSIATR-QLSSEWEATRIEALHWIST 305 (666)
Q Consensus 232 ~pylp~lL~~L-L~~Lsd~~---~eI-R~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~-~L~~~~~~tR~aaL~WL~~ 305 (666)
..|+|.+.+.. .+|+++.. .++ ...|..++ .++...- ...--..+++..++. .+.+..|.+|.+++..+..
T Consensus 1477 ~kyl~~~~~~~~~~~~~~~~y~~~d~a~~~a~~~~-~lm~~~~--~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~ 1553 (1710)
T KOG1851|consen 1477 PKYLPDLIADDLYPCLGENTYRDVDLAKNSALLCH-SLMSLSW--IGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQT 1553 (1710)
T ss_pred hhhhhhhhcccccccccccccccchHHHHHHHHHH-HHHHhhc--cchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45566666643 45666542 233 33333333 3332211 112224677888874 3456779999999998875
Q ss_pred HH--hhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 306 LL--NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 306 L~--~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
+. +..+ --..+-+++...+.+.|+|..-+|+..+..+|+-+-
T Consensus 1554 ~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1554 VVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 43 2333 234566789999999999998899999999988876
No 288
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=64.60 E-value=2.4e+02 Score=31.59 Aligned_cols=184 Identities=16% Similarity=0.221 Sum_probs=103.4
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~ 192 (666)
..|+-.|.+++.++||+-|.++.+-+..+ +.-..+--+-+|++..+.+-+|+.+.. .+.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~i-------------------y~k~~~~r~~Ir~~i~~~~~~fi~e~~--~~~ 190 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRI-------------------YGKFPNLRSFIRKSINNIFYRFIYETE--RHN 190 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHH-------------------HHH-TTTHHHHHHHHHHHHHHHHHTTS----S
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------------------HHHhhhhHHHHHHHHHHHHHHHhcCcc--ccc
Confidence 46777788888888888887666555532 222223334567766676777766442 234
Q ss_pred CHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHh
Q 005975 193 DYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d----~~irl~Al~WL~~~i~l~-~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (666)
.+.++++++-..+..-. ++.+. .+...++-+. ...+..|.+.+...+...+. .++
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~---fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~-kdp---------------- 250 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQ---FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE-KDP---------------- 250 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHH---HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH-H-G----------------
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hCc----------------
Confidence 55666666665554311 22221 1122122211 11222222222222221111 000
Q ss_pred hCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 268 KADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 268 i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p-~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
--...++..+..+---.+..-.+.-+.-+..+.+..+ +++......+|..+-++++.++-.|.+.|+.+|
T Consensus 251 -------~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 251 -------SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp -------GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred -------hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0024566666666656667777888888888888765 677888899999999999999999999999654
No 289
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=64.44 E-value=2.4e+02 Score=31.42 Aligned_cols=266 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred hHHHhhhhhHHHHHhhcCCCCHHHHHHH--HHHHHHHHHH--hcchhhhhHHHHHHHHH---HhhcCCchhHHHHHHHHH
Q 005975 25 YSETILQQIVPPVLNSFSDQDSRVRYYA--CEALYNIAKV--VRGDFIIFFNQIFDALC---KLSADSDANVQSAAHLLD 97 (666)
Q Consensus 25 ~~~~yl~~Il~pVL~~~~D~d~rVR~~A--~eaL~nI~Kv--~r~~il~~f~eIfd~L~---kl~~D~d~~Vr~gA~~Ld 97 (666)
++..+..+|.|++ .=.++.-.-|-|. +-++++.+.+ .|+.--..+..++|.+. .+-+|.+.. +..+.
T Consensus 66 Y~g~~~k~i~p~l--~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~----~~l~~ 139 (373)
T PF14911_consen 66 YFGDFEKWIKPYL--KSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLP----PALLQ 139 (373)
T ss_pred HHHHHHHHcCCcc--ccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCC----hHHHH
Q ss_pred HHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHH-----
Q 005975 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR----- 172 (666)
Q Consensus 98 rLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR----- 172 (666)
.+=| .+..|+--+...-+..|++..+.+=+-+. .|+|.|++ .+-+.-.+|
T Consensus 140 ai~k---------~lpl~lqGl~~~~~~~dayL~~~l~~ii~-----------~y~~~Fl~-----~~~~~~~~~l~~~~ 194 (373)
T PF14911_consen 140 AIRK---------SLPLFLQGLGRLSQRQDAYLNQQLRNIIQ-----------QYLPRFLP-----ASPSKLVARLSTLL 194 (373)
T ss_pred HHHH---------HHHHHHHHHHhcccccChHHHHHHHHHHH-----------HHHhHhcc-----CCCccccccccccc
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh----cCcccccchHhHHHHHhhhhc-
Q 005975 173 QQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL----GGDQLVPYYADILGAILPCIS- 247 (666)
Q Consensus 173 ~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l----~~~~l~pylp~lL~~LL~~Ls- 247 (666)
.....--..+.+-| ++.+.+.-+..-++.-+-.--.++.+|.++++- ......-++.-++|.++.|+-
T Consensus 195 ~~~~~~~~~l~~~i-------l~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~ 267 (373)
T PF14911_consen 195 SAFTPRNEELRKFI-------LQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLML 267 (373)
T ss_pred cchhhhhhHHHHHH-------HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhh
Q ss_pred -CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHH
Q 005975 248 -DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (666)
Q Consensus 248 -d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL 326 (666)
++++.+|..|.+....+++.......+..=+.+-+++..-..+--..--.-....+..++...|+-+.+.++.+-..+.
T Consensus 268 v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 268 VNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLK 347 (373)
T ss_pred cCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 005975 327 KA 328 (666)
Q Consensus 327 ~~ 328 (666)
.+
T Consensus 348 ~~ 349 (373)
T PF14911_consen 348 DS 349 (373)
T ss_pred HH
No 290
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=63.22 E-value=1e+02 Score=27.75 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=55.7
Q ss_pred CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH-H-HHHHHH----hc--CCCCHHHHHHHHHHHHH
Q 005975 275 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND-I-FDTLLK----AL--SDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 275 ~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~-l-~p~LL~----~L--sD~s~eVv~~~l~lLa~ 346 (666)
.....++..|.+.+.+.+|.+..-||.-+-.+...|++.+..++.. . .-.+++ .. .|.+..|+.++++++..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999988776543 2 122222 11 24577899999988765
Q ss_pred Hh
Q 005975 347 IA 348 (666)
Q Consensus 347 Is 348 (666)
.+
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 43
No 291
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=62.85 E-value=70 Score=29.82 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=56.8
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH--HHHHHHHhcCC---CCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND--IFDTLLKALSD---PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~--l~p~LL~~LsD---~s~eVv~~~l~lLa~Is 348 (666)
-...+..|.+.+.+.+..+++.||.-+-.+...|+..+...+.. .+..|.+.++. .+++|+.+.++++..-+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999977544332 33346666655 46789999998876665
No 292
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=62.50 E-value=25 Score=34.51 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=36.8
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
+...-+.+|...+ .++.||++||+||.. .++.++..|||.++..|-
T Consensus 77 ~~~~aLeLL~~~f--~~~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLK 122 (166)
T cd00870 77 DIEDALELLSPYF--TNPVVRKYAVSRLKL---ASDEELLLYLLQLVQALK 122 (166)
T ss_pred CHHHHHHHcCccC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 4555566666555 579999999999984 778999999999999875
No 293
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=62.48 E-value=8.8 Score=37.95 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 124 ~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
+..+|.||++++.|+. +.++.++.-|+|.+++.|-
T Consensus 81 y~~~~~Vr~yAvr~L~---~~~~e~l~~YlpQLVQaLr 115 (175)
T cd00871 81 YPGHPLVLQYAVRVLE---SYPVETVFFYIPQIVQALR 115 (175)
T ss_pred cCCCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 3468999999999987 5788999999999998764
No 294
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=62.23 E-value=38 Score=33.59 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005975 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEF 223 (666)
Q Consensus 154 p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~ 223 (666)
|.+.+-+.+++.+.++=+|+++..++-.+.. . -+++.+..++...+.+++..+|...--+|.++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~---~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~ 182 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIR---K---EDFDELLEIIEALLKDEEYYVQKAIGWALREI 182 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG---G---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH---h---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 5566666667767776666666554433222 1 34556666666666666666666333334433
No 295
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=61.73 E-value=9.6 Score=28.54 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.2
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHH
Q 005975 152 FLPDFLDGLFNMLSDSSHEIRQQADSA 178 (666)
Q Consensus 152 yLp~fL~gLf~lLsD~~~eVR~~A~~~ 178 (666)
.-+.+...+-+-+.|+++.||++|.++
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456888999999999999999998654
No 296
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=61.29 E-value=26 Score=32.27 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CC--------------C
Q 005975 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PS--------------V 192 (666)
Q Consensus 129 ~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~--~~--------------~ 192 (666)
++|.-++..+..+.. .+.-...|+|++.+++.+.. ++.-....-..|..+.+|+.+. .. .
T Consensus 3 ~i~~kl~~~l~~i~~---~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAK---RDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHH---HHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 455555555443321 12223567788888877766 4666666778888888888641 11 0
Q ss_pred CHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhcCcc-cccchHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 193 DYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d----~~irl~Al~WL~~~i~l~~~~-l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
..+.+++++.+.+.... ++....++.-+..++...+.. +.. ..+++.++..+. +++.+..|.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~c 147 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQ--SPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcC--CHHHHHHHHHh
Confidence 23556666655544332 666666766665555533322 222 347888888774 44457777776
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.71 E-value=70 Score=30.09 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=54.1
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCC--HH--HHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPS--DE--VVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s--~e--Vv~~~l~lLa~Is 348 (666)
-.+.+..|.+.+.+.+..+..-||.-+-.+...|+..+...+ .+.+..|.+.+.++. +. |+.+.+.++..-+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999998876442 234444444444332 22 8889988877666
No 298
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=60.68 E-value=29 Score=31.04 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=54.8
Q ss_pred hHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhhcCC
Q 005975 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSADS 85 (666)
Q Consensus 25 ~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~-il~~f~eIfd~L~kl~~D~ 85 (666)
.+.+|.+.++.-+..+++.=++.||.-|..-|.-+.+.+.++ +..+|..+++..+.+++-.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999999998888 5688999999999888655
No 299
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=60.62 E-value=4.3e+02 Score=33.12 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=126.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhcC--cccccc------
Q 005975 165 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR--LTAITWINEFVKLGG--DQLVPY------ 234 (666)
Q Consensus 165 sD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~ir--l~Al~WL~~~i~l~~--~~l~py------ 234 (666)
-|.+..||.++..+|..|+.-....--.++-.+++.++.+-.+++++.. ..++.- .+|.++.. .+++.+
T Consensus 483 L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~-a~~~dI~~aVlgll~~~A~kl~ 561 (1697)
T KOG3687|consen 483 LDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYS-ASLEDIKTAVLGLLVILATKLY 561 (1697)
T ss_pred ccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhc
Confidence 4566789999999999999877554445778889998888666653221 111110 11111100 001111
Q ss_pred -hH-----hHHHHHhhh--hcCCcHHHHHHHHHHHHHH------HHhhCC-----------------------------C
Q 005975 235 -YA-----DILGAILPC--ISDKEEKIRVVARETNEEL------RAIKAD-----------------------------P 271 (666)
Q Consensus 235 -lp-----~lL~~LL~~--Lsd~~~eIR~~A~~~n~~L------~~~i~~-----------------------------~ 271 (666)
+| ++--.++.. |.+..|.|+..+..+--.. ++.-.. .
T Consensus 562 ~lP~~ha~~v~~~l~~h~~Lhy~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv~fspyLGId~pl~p~~~ 641 (1697)
T KOG3687|consen 562 TLPASHATRVYEMLVSHIQLHYKHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVVRFSPYLGIDGPLSPPTG 641 (1697)
T ss_pred cCchHHHHHHHHHHHHhhhhhccCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccEEEeeeeeeecCCCCCCCC
Confidence 11 112222222 3356677776665432221 111100 0
Q ss_pred CCCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc----------CCCCHHHHHHH
Q 005975 272 ADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL----------SDPSDEVVLLV 340 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L----------sD~s~eVv~~~ 340 (666)
+..+.+..+..++.+.+. +.+|+++.-.+.-+-......-.-..+-.+++-.+|++-+ .|+.+.+|.-+
T Consensus 642 p~~i~~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~Pv 721 (1697)
T KOG3687|consen 642 PPVVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVVPV 721 (1697)
T ss_pred CCcccHHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeehHH
Confidence 122446677777888876 4568777766555444444333333445556656666554 23344455555
Q ss_pred HHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHH--hccCChHHHHHHHHHhhccc-----------CC
Q 005975 341 LEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL--CVLLDAERVYRELSTILEGE-----------AD 405 (666)
Q Consensus 341 l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~L--c~~L~~E~Iy~~la~iL~~~-----------~d 405 (666)
+..|--+.. ..+..+..+..|-+.+- ..-++.-|+.| |.+--+|.+|+.|-+.+..+ .-
T Consensus 722 ~~~L~~yh~~lQ~~~~~~~I~~l~q~li------~~~aSVcv~~lsi~~Lemp~~~~~~LpD~v~Q~t~~s~t~~LaTP~ 795 (1697)
T KOG3687|consen 722 LTALISYHNYLQKTKQREMIYCLEQGLI------HRCASVCVVALSICSLEMPDIIIKALPDLVVQLTHISATASLATPL 795 (1697)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHh------hhhHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhhccc
Confidence 544444442 12223344444433222 22234444443 55667788999988887542 34
Q ss_pred hHHHHHHHHH
Q 005975 406 LDFACTMVQA 415 (666)
Q Consensus 406 l~F~~~mVq~ 415 (666)
++|+|.|+..
T Consensus 796 leFlS~l~~L 805 (1697)
T KOG3687|consen 796 LEFLSTLARL 805 (1697)
T ss_pred HHHHHHHHHH
Confidence 7777777643
No 300
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=59.01 E-value=2.7e+02 Score=34.72 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=97.6
Q ss_pred HhhhhhHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHH
Q 005975 28 TILQQIVPPVLNS-----FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (666)
Q Consensus 28 ~yl~~Il~pVL~~-----~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlK 101 (666)
-|=++|+..|.-. --|+|-+||+.+..++.|++..|...-..-.-+++.++.+-..++++...+-. .+..+-+.
T Consensus 464 ~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~ 543 (1697)
T KOG3687|consen 464 FYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLE 543 (1697)
T ss_pred hhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHH
Confidence 3556666655322 24789999999999999999888765433345677777766556655443322 22333334
Q ss_pred Hhhccc-----------------ccccH-hhh-----HHHHHHhhcCCCHHHHHHHHHHHHHhh--cCCch---------
Q 005975 102 DIVTES-----------------DQFSI-EEF-----IPLLRERMNVLNPYVRQFLVGWITVLD--SVPDI--------- 147 (666)
Q Consensus 102 DIv~e~-----------------~~f~L-~~f-----IPlL~eri~~~np~vR~~alswL~~L~--svp~~--------- 147 (666)
||.+.- .++-+ +.| +|.....|...-+-+|+.+..|+..+- +...+
T Consensus 544 dI~~aVlgll~~~A~kl~~lP~~ha~~v~~~l~~h~~Lhy~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~V 623 (1697)
T KOG3687|consen 544 DIKTAVLGLLVILATKLYTLPASHATRVYEMLVSHIQLHYKHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGV 623 (1697)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccE
Confidence 443321 01000 000 111111112233567899999988652 22111
Q ss_pred -hhhhchH-----------------HHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 005975 148 -DMLGFLP-----------------DFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA 205 (666)
Q Consensus 148 -~Li~yLp-----------------~fL~gLf~lLs-D~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~ 205 (666)
.+.+||. .+...+.+++. |.+-+|++.+-.-|.+.++.-......|++++.++|.+..
T Consensus 624 v~fspyLGId~pl~p~~~p~~i~~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~ 700 (1697)
T KOG3687|consen 624 VRFSPYLGIDGPLSPPTGPPVVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSML 700 (1697)
T ss_pred EEeeeeeeecCCCCCCCCCCcccHHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHH
Confidence 1233332 34555567774 7888888887665555554322223457777777777654
No 301
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.76 E-value=42 Score=31.13 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=50.5
Q ss_pred HhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChHHHhhh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
-+++..|.+.+.. ++..+-.-|..=|+++++.+|++-.-- --+.-..++..+++++++|+..|+.++.++-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4778888888843 445555567788999999998863311 1135577889999999999999999888765
No 302
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=58.68 E-value=3.5e+02 Score=32.13 Aligned_cols=179 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhcc
Q 005975 312 TEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (666)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s-~eVv~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~ 386 (666)
..+.+-....+..++..+++-. .++..-++..+...+ .-....+.++...+..-++..--+.--+-++++.+|..
T Consensus 233 ~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~ 312 (661)
T KOG2256|consen 233 YKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRK 312 (661)
T ss_pred hhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHH
Q ss_pred CChHHHHHHHHHhhcc---------cCChHHHHHHHHHHHHHhccchhH-------------HHHHHHHHhccCCcchHH
Q 005975 387 LDAERVYRELSTILEG---------EADLDFACTMVQALNLILLTSSEL-------------SELRDLLKKSLVNPAGKD 444 (666)
Q Consensus 387 L~~E~Iy~~la~iL~~---------~~dl~F~~~mVq~Ln~iLLTs~El-------------~~lR~~L~~~l~~~~~~~ 444 (666)
.++.-+...|=..... -+++++.+-|--.|-.++...++. ..||+.+.. .++++..
T Consensus 313 ~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~--k~K~s~~ 390 (661)
T KOG2256|consen 313 FKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMIT--KNKESVQ 390 (661)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhc--CCHHHHH
Q ss_pred HHHHHHHhhccChHHHHHHHHHHhhhH-----------HHHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhc
Q 005975 445 LFVSLYASWCHSPMAIISLCLLAQTYH-----------HASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLL 513 (666)
Q Consensus 445 lF~~L~~~w~~n~vs~lsLcll~~~Y~-----------~a~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Ll 513 (666)
.-..|-| .-||=||++.-- +.|-++|..- -.++|+.+|-|.-||++++
T Consensus 391 ----~VYnWqf----i~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~-------------GvirLipT~qy~PLRlhci 449 (661)
T KOG2256|consen 391 ----SVYNWQY----VHCLDLWLRVISFANGSASQLQPLVYPLVQVIL-------------GVIRLIPTPQYYPLRLHCI 449 (661)
T ss_pred ----HHHHHHH----HHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHH-------------HHhhhcCcccchhHHHHHH
No 303
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.50 E-value=90 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=56.1
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~Ls-D~s~eVv~~~l~lLa~Is 348 (666)
-.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+...+. +.+..|.+.++ ..++.|+.+.+.++..-+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999887764332 34455555554 567889999998766655
No 304
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=58.26 E-value=12 Score=36.93 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=33.1
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
..-+.+|...+ .|+.||++||.|+. +.++.++..|+|.+++.|-
T Consensus 72 ~~ALeLL~~~f--~d~~VR~yAV~~L~---~~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 72 LIALELLLPKF--PDQEVRAHAVQWLA---RLSNDELLDYLPQLVQALK 115 (169)
T ss_pred HHHHHHcCCcC--CChHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 33344444444 46889999999987 5688899999999999774
No 305
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=57.99 E-value=1.1e+02 Score=35.99 Aligned_cols=92 Identities=27% Similarity=0.402 Sum_probs=65.4
Q ss_pred HHHHHHhccCChH--------------HHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchH
Q 005975 378 LIIRRLCVLLDAE--------------RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGK 443 (666)
Q Consensus 378 ~IIR~Lc~~L~~E--------------~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~ 443 (666)
-+|+||....+.+ .+|.+++++| .+++|-.|..+-...|++ +|
T Consensus 129 n~v~QLaaly~~~~~~~~~~~~~v~l~~vf~~lg~lL-----------------~vlvtlDeIi~~n~~L~~------~w 185 (567)
T PF14745_consen 129 NLVQQLAALYSSQKAPKPIDFKGVHLQTVFDHLGELL-----------------RVLVTLDEIIEQNPSLRD------HW 185 (567)
T ss_pred HHHHHHHHHHcccccCCccccCCccHHHHHHHHHHHH-----------------HHHHHHHHHHHhhHHHHH------HH
Confidence 4788887776653 5566666655 455566677676677765 79
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHH-----HhhchhhHHHHHHhcCC
Q 005975 444 DLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR-----LLETPIFAYLRLQLLEP 515 (666)
Q Consensus 444 ~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~~e~~~~~l~q~d~Lvq-----llEspif~~lRl~Lle~ 515 (666)
..|...-+++.||| +..+++.+-|-++|+++. +++..+|...==|+.+.
T Consensus 186 ~~ykr~l~~v~~np-----------------------~~f~~~~~~l~~le~ll~~le~~ll~g~iF~~~~eq~fd~ 239 (567)
T PF14745_consen 186 SLYKRMLKSVRHNP-----------------------SKFGVTEEKLRQLEKLLADLEGQLLDGNIFQRCLEQLFDD 239 (567)
T ss_pred HHHHHHHHHHhcCh-----------------------hhcCCCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccc
Confidence 99999999999999 344677888888888885 44456676665566663
No 306
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.95 E-value=19 Score=33.37 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=53.9
Q ss_pred HHHHhhcCCchhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHhcCCCCHHHHH
Q 005975 137 WITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEILVQRAASPDEFTRL 214 (666)
Q Consensus 137 wL~~L~svp~~~Li~yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~~-~d~~~iI~iLl~~~~s~d~~irl 214 (666)
|..+....-+.+. +++..|.++|.. .++.+-..||.=++.|++..++.-. ++--+.-+.+...+.++|+++|.
T Consensus 30 W~ENa~kf~~~~~-----~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~ 104 (119)
T PF11698_consen 30 WRENADKFEENNF-----ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRY 104 (119)
T ss_dssp HHHHSGGGSSGGG-----HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHH
T ss_pred HHHHHHHHHHccc-----HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHH
Confidence 6666655544433 567888888844 3677777788889999886644210 01122345667778899999999
Q ss_pred HHHHHHHHHH
Q 005975 215 TAITWINEFV 224 (666)
Q Consensus 215 ~Al~WL~~~i 224 (666)
.|+.-+..++
T Consensus 105 eAL~avQklm 114 (119)
T PF11698_consen 105 EALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887665
No 307
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.60 E-value=2.8e+02 Score=30.12 Aligned_cols=131 Identities=28% Similarity=0.400 Sum_probs=77.2
Q ss_pred HhHH-HHhhhhhhHHHh--hhhhHHHHHhhc-CCCCHHHHHHH-HHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchh
Q 005975 14 EQFL-LYADLFFYSETI--LQQIVPPVLNSF-SDQDSRVRYYA-CEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDAN 88 (666)
Q Consensus 14 ~~~~-~~~~~~~~~~~y--l~~Il~pVL~~~-~D~d~rVR~~A-~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~ 88 (666)
|+-+ +||-+-+.+..- ++.|+.||.-.| +|+|..-|+|| |.+..-... -..+|=|..++-+.|++-.
T Consensus 175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~--------LMseirDnf~k~LDdS~~G 246 (370)
T KOG4567|consen 175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQ--------LMSEIRDNFIKTLDDSVGG 246 (370)
T ss_pred HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHH--------HHHHHHHHHHHhccccccc
Confidence 4545 889888887543 688999999999 69999999987 444433321 2345556667777787776
Q ss_pred HHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCC
Q 005975 89 VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS 168 (666)
Q Consensus 89 Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~ 168 (666)
++-.-..+..++|+-=.| . =-.| + -...+|+ .++.-||+.+.+-- + -+|+.+.-==.+++|+.
T Consensus 247 I~~~Msr~~~~lk~~D~E-------L-~~~L-~-~~~i~Pq--fyaFRWitLLLsQE---F--~lpDvi~lWDsl~sD~~ 309 (370)
T KOG4567|consen 247 IHFLMSRLSELLKKHDEE-------L-WRHL-E-EKEIHPQ--FYAFRWITLLLSQE---F--PLPDVIRLWDSLLSDPQ 309 (370)
T ss_pred hHHHHHHHHHHHHHhhHH-------H-HHHH-H-hcCCCcc--chhHHHHHHHHhcc---C--CchhHHHHHHHHhcChh
Confidence 665444444455522211 0 0111 1 1123333 67888999776431 1 24444443335667876
Q ss_pred h
Q 005975 169 H 169 (666)
Q Consensus 169 ~ 169 (666)
+
T Consensus 310 r 310 (370)
T KOG4567|consen 310 R 310 (370)
T ss_pred h
Confidence 5
No 308
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=57.33 E-value=9.9 Score=37.83 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005975 70 FFNQIFDALCKLSADSDA-NVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (666)
Q Consensus 70 ~f~eIfd~L~kl~~D~d~-~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~ 148 (666)
..++.++.+...+.-.++ .|+++-.+|.. =...+...-+.+|...+ .++.||++|+.++. +.++.+
T Consensus 42 ~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~--------W~~~~p~~AL~LL~~~f--~~~~VR~yAv~~L~---~~~d~~ 108 (184)
T PF00613_consen 42 NNPEALPKLLRSVDWWNPEEVSEAYQLLLQ--------WPPISPEDALELLSPNF--PDPFVRQYAVRRLE---SLSDEE 108 (184)
T ss_dssp TSGGGHHHHHTTSTTTSHHHHHHHHHHHHT--------SHCTTHHHHHHCTSTT-----HHHHHHHHHHHC---TS-HHH
T ss_pred hCchHHHHHHhhCCCCchhhHHHHHHHHHc--------CCCCCHHHHHHHHHhhc--cHHHHHHHHHHHHH---HcCchH
Confidence 345556666665554444 34433333222 11123444455554444 45999999999985 588899
Q ss_pred hhhchHHHHHHHH
Q 005975 149 MLGFLPDFLDGLF 161 (666)
Q Consensus 149 Li~yLp~fL~gLf 161 (666)
+..|+|.++..|-
T Consensus 109 l~~yLpQLVQaLr 121 (184)
T PF00613_consen 109 LLFYLPQLVQALR 121 (184)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhe
Confidence 9999999999773
No 309
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.19 E-value=82 Score=37.63 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~ 320 (666)
+++.+.|...+..+....-..++..+....++.+.+....+++
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444444444333222222345566666666666666555544
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.11 E-value=7e+02 Score=34.22 Aligned_cols=203 Identities=18% Similarity=0.191 Sum_probs=111.7
Q ss_pred chhhhhchHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHHHHHhcCCCCHHHHHHHHHH
Q 005975 146 DIDMLGFLPDFLDGLFNMLSDS---SHEIRQQADSALWEFLQEIKNSPSVDY---GRMAEILVQRAASPDEFTRLTAITW 219 (666)
Q Consensus 146 ~~~Li~yLp~fL~gLf~lLsD~---~~eVR~~A~~~L~~fL~eI~~~~~~d~---~~iI~iLl~~~~s~d~~irl~Al~W 219 (666)
...+..|++..+-|+++..+-- ....+.....++...-+.++-.+.-.+ ..-|+.++....-..++.+..|+.-
T Consensus 865 ~e~~~~fl~~~llgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~ 944 (2382)
T KOG0890|consen 865 SELFQDFLQNHLLGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKA 944 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHH
Confidence 4557889999999988766443 334444444444444444433221222 2334444444222345566666553
Q ss_pred HHHHHHh-cCcccccchHh-HHHHHhhhhcCCcH-HHHHHHHHH---HH-HHHHhhCCC---------------------
Q 005975 220 INEFVKL-GGDQLVPYYAD-ILGAILPCISDKEE-KIRVVARET---NE-ELRAIKADP--------------------- 271 (666)
Q Consensus 220 L~~~i~l-~~~~l~pylp~-lL~~LL~~Lsd~~~-eIR~~A~~~---n~-~L~~~i~~~--------------------- 271 (666)
...|+.. ....+-+.++. +++.++|.+.+.+. ++-...... |. .+.....+.
T Consensus 945 w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~ 1024 (2382)
T KOG0890|consen 945 WHIFIRILNDNEKSDILDRNIIAALFPLLEHIELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARG 1024 (2382)
T ss_pred HHHHHHHHhhhhhcchhhhHHHHHHHHHhccccHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHh
Confidence 3344443 33344555666 68888888854332 222222211 00 000000000
Q ss_pred -CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh--------ChHHHh--hhhHHHHHHHHHhcCCCCHHHHHHH
Q 005975 272 -ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR--------HRTEVL--HFLNDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 272 -~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~--------~p~~i~--~~l~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
.+.-++...+....+.+.+++.++|.-++.=+..+..+ .++.+. +-+.+++.+|++++.+...+....+
T Consensus 1025 ~~~~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~ 1104 (2382)
T KOG0890|consen 1025 LLSEDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELC 1104 (2382)
T ss_pred hccccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01114566777788888899999999999888877773 233333 5667788888888776665556666
Q ss_pred HHHHHHHh
Q 005975 341 LEVHACIA 348 (666)
Q Consensus 341 l~lLa~Is 348 (666)
...|+.++
T Consensus 1105 akcLg~lg 1112 (2382)
T KOG0890|consen 1105 AKCLGELG 1112 (2382)
T ss_pred HHHHHhhh
Confidence 56666665
No 311
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.91 E-value=6.5e+02 Score=33.79 Aligned_cols=221 Identities=13% Similarity=0.063 Sum_probs=135.7
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHH-HHHHHHHHhhcC-CCCCHHHHHHHH
Q 005975 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS-ALWEFLQEIKNS-PSVDYGRMAEIL 201 (666)
Q Consensus 124 ~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~-~L~~fL~eI~~~-~~~d~~~iI~iL 201 (666)
-.+||..|-.+...+..+.-+-+. .+++-...+..|+-+.+..+.|++.... +++-+.+-++.. +.-++..=+.+|
T Consensus 886 ~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~il 963 (2067)
T KOG1822|consen 886 INPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSIL 963 (2067)
T ss_pred ccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHH
Confidence 357888888888777777654433 3456677788888888876666665433 333333333221 123455556677
Q ss_pred HHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC---CcHHHHHHHHHHHH------HHHHhhCCC
Q 005975 202 VQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD---KEEKIRVVARETNE------ELRAIKADP 271 (666)
Q Consensus 202 l~~~~s~d-~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd---~~~eIR~~A~~~n~------~L~~~i~~~ 271 (666)
+.-.++++ +.++.-++.-+..+.+-++..+.-|....+..++..+-- ..-|++..-.+++. .+...++..
T Consensus 964 lal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpe 1043 (2067)
T KOG1822|consen 964 LALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPE 1043 (2067)
T ss_pred HHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccc
Confidence 77776665 599999999998888887777788888888888876643 23455544444443 344443321
Q ss_pred -CCCC--C----h-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005975 272 -ADGF--D----V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (666)
Q Consensus 272 -~~~~--d----l-~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~l 343 (666)
+.+. | + ...+-...-.+.+++..+..+++.-+.+++--+|. .-+++.+++.+-..|+-+---.+..+...
T Consensus 1044 L~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~c 1121 (2067)
T KOG1822|consen 1044 LGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSC 1121 (2067)
T ss_pred cCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhh
Confidence 1111 1 1 12222333445566788888888888888888877 35677888888777665443333444444
Q ss_pred HHHHh
Q 005975 344 HACIA 348 (666)
Q Consensus 344 La~Is 348 (666)
|.++.
T Consensus 1122 lrql~ 1126 (2067)
T KOG1822|consen 1122 LRQLV 1126 (2067)
T ss_pred hhHHh
Confidence 44443
No 312
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.52 E-value=2.7e+02 Score=29.30 Aligned_cols=143 Identities=14% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc--------ccccchHhHHHHHhhhhcCCc-----HHHHHHHH
Q 005975 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD--------QLVPYYADILGAILPCISDKE-----EKIRVVAR 258 (666)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~--------~l~pylp~lL~~LL~~Lsd~~-----~eIR~~A~ 258 (666)
.+++.+.+.+++-+.++..... ++.-+..+...+.+ .+.-.+-..+|-++..+.++. ++++..|.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~--tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYEL--TLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHH--HHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 5789999999999988764322 23334444444322 222234455666666666655 55665554
Q ss_pred HHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHh-hhhHHHHHHHHHhcCCCCHHHH
Q 005975 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 259 ~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~-~~l~~l~p~LL~~LsD~s~eVv 337 (666)
. +.....+ ...-+++.++....+.-..+ .=+|+..+...--+.+. .|--+++..|+..|...-+-++
T Consensus 138 ~----La~~a~~-~~~~~La~il~~ya~~~fr~-------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 138 A----LAQVAEA-QGLPNLARILSSYAKGRFRD-------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred H----HHHHHHh-CCCccHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 3 3333321 22234555555433332221 22488877777777776 4556788999999999999999
Q ss_pred HHHHHHHHHHh
Q 005975 338 LLVLEVHACIA 348 (666)
Q Consensus 338 ~~~l~lLa~Is 348 (666)
..++++|..+-
T Consensus 206 ~~~L~iL~~ll 216 (262)
T PF14225_consen 206 RKTLQILKVLL 216 (262)
T ss_pred HHHHHHHHHHh
Confidence 99999888776
No 313
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=55.24 E-value=1.9e+02 Score=27.74 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc
Q 005975 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (666)
Q Consensus 209 d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L 288 (666)
+...|..+++-+..+++.+|..+..+- . ...+...++ +.+.+.+.+.+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~-------------~-----------~~~l~~~lk--------~~l~~~Ll~~~ 82 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSE-------------E-----------HPSLINLLK--------DDLCPALLKNL 82 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCc-------------c-----------hHHHHHHHH--------HHHHHHHHHHH
Confidence 345678888888888887776655321 0 112222222 24555555555
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHH-hcCCCC--HHHHHHHHHHHHHHhhccchHHH
Q 005975 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK-ALSDPS--DEVVLLVLEVHACIAKDLQHFRQ 356 (666)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~-~LsD~s--~eVv~~~l~lLa~Is~~~~~F~~ 356 (666)
.+++..+=..++.-+..+..+....+...++-+++.++. .++.+. .+-+..+++++.+++++.+.+..
T Consensus 83 ~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~ 153 (168)
T PF12783_consen 83 SSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVD 153 (168)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHH
Confidence 545555555677767777777777777677777777766 443222 35677899999999976654433
No 314
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=54.99 E-value=53 Score=28.41 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=52.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005975 116 IPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (666)
Q Consensus 116 IPlL~eri-~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~ 180 (666)
+-++..-+ ...+.++|..++.++..+....+..+-.=.+.++..+-....|.++++-..|-+++.
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 33344443 457899999999999999998888888889999999998899988888877766554
No 315
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=54.94 E-value=1.2e+02 Score=34.76 Aligned_cols=110 Identities=8% Similarity=0.221 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhC
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~ 269 (666)
+++.+.|++.+++-+...+++.+...++|+.+ ..+++.++..|+ ..+.++...|+++...+.+...
T Consensus 29 HI~~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 29 HIDTPAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred hcCCcHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45678888888888887777788888999974 345555666665 3456788888888877776654
Q ss_pred CCCC------CCC-------hHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChHH
Q 005975 270 DPAD------GFD-------VGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTE 313 (666)
Q Consensus 270 ~~~~------~~d-------l~~il~~L~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~ 313 (666)
+.+. +.+ -++++..|...+.+ .....-..++.-++.+.++...+
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknnsd 153 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNSD 153 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcccc
Confidence 3211 111 14555545444432 33445566666777777776443
No 316
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=54.93 E-value=24 Score=31.02 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 131 RQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 131 R~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
|-.++--+..+...-+-++=+|+|++|..|.+..+| ...|++.+.++|.+|-+.
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 444555555555554555666999999999999998 557999999999999873
No 317
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.92 E-value=80 Score=37.81 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=54.0
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~Ls-D~s~eVv~~~l~lLa~Is 348 (666)
..+++.|..++.. ..+|+.+|..|+.+...-|.-+-...+ .+|+.||++|. |.+.-|+..++-+|..+-
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 4667777777765 568999999999999998887766555 68999999986 667777878877665543
No 318
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=51.78 E-value=5.1e+02 Score=31.30 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=87.1
Q ss_pred ccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC---CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005975 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA---DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~---~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~ 308 (666)
..+.|.+=..+...+..++... |......+..+.+ -...+ ..+-++.-..++...-...+...-+-+..+.+
T Consensus 436 ~~~~~~lW~~l~~~~~~~~~~l---a~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~ 510 (727)
T PF12726_consen 436 SRISPNLWKALLKSLDSDNPDL---AKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSD 510 (727)
T ss_pred hhhhHHHHHHHHHhhcCCChHH---HHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467777777787777666663 3333333332221 00011 00111122222222223445556667777777
Q ss_pred hChHHHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------cchHHHHHHHHHhhcc---------
Q 005975 309 RHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFLVHNFR--------- 366 (666)
Q Consensus 309 ~~p~~i~~~l~--~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-----------~~~F~~fm~~LL~lf~--------- 366 (666)
..|+.+...+. +..-.+..++-.+++++.+.|..++..+.+. +.+|+.++.++..-+.
T Consensus 511 ~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~ 590 (727)
T PF12726_consen 511 FDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFE 590 (727)
T ss_pred CCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhc
Confidence 78888777666 6777888999999999999999999999842 2445554444433222
Q ss_pred ccchhhhhHHHHHHHHHhccCCh
Q 005975 367 VDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 367 ~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
.=.+.+.+ +..||+-||-..++
T Consensus 591 p~pr~vr~-~~DIi~~Lcdp~~G 612 (727)
T PF12726_consen 591 PCPRMVRC-LMDIIEVLCDPVSG 612 (727)
T ss_pred chHHHHHH-HHHHHHHHcCCCCC
Confidence 11333333 45677777777666
No 319
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.36 E-value=2.2e+02 Score=27.32 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhc-CCCC--HHHHHHHHHHHHHHHHh
Q 005975 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPD--EFTRLTAITWINEFVKL 226 (666)
Q Consensus 158 ~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~-~s~d--~~irl~Al~WL~~~i~l 226 (666)
+.|.+.+..+++.|=..+.+.+..++...+..-...++-+++.++..+ .++. ...|..+++-+..+++.
T Consensus 76 ~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 76 PALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 334444444446666566666665555544322234566666666633 3332 45777889988888764
No 320
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.31 E-value=1.3e+02 Score=28.16 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=56.3
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCCCC--HHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPS--DEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s--~eVv~~~l~lLa~Is 348 (666)
-...+..|.+.+.+.++.+.+.||.-+-.+...|+..+...+. +.+..|.+.++++. +.|+.+.+.++..-+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999988754432 35556666666654 448889888766655
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.09 E-value=72 Score=29.72 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=46.1
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHH
Q 005975 287 QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 358 (666)
Q Consensus 287 ~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~F~~fm 358 (666)
...++++++=...+.-|..+....+.++ .++...|++.|.|.++.|..++|.+|..++. +...|...+
T Consensus 9 ATsdd~~p~pgy~~~Eia~~t~~s~~~~----~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~ 77 (122)
T cd03572 9 ATSDDDEPTPGYLYEEIAKLTRKSVGSC----QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKREL 77 (122)
T ss_pred HhcCCCCCCchHHHHHHHHHHHcCHHHH----HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHH
Confidence 3344445554555555555555544443 3678889999999999999999999999994 445565443
No 322
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=51.03 E-value=4.2e+02 Score=30.10 Aligned_cols=270 Identities=14% Similarity=0.122 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH-HHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhh
Q 005975 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDA-LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM 123 (666)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~-L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri 123 (666)
-+-|-+|+.+|..+......+. .+++|+. |..+++++-..-|-.| ..+....+.........+.+.|.+.|.+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~---~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESS---LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 6889999999888876543322 3456664 6677777766666666 445554443332222222567888888887
Q ss_pred cCCC-----------HHHHHHHHHHHHHhhcCCc--h-----------------------h-hhhchHHHHHHHHHhcCC
Q 005975 124 NVLN-----------PYVRQFLVGWITVLDSVPD--I-----------------------D-MLGFLPDFLDGLFNMLSD 166 (666)
Q Consensus 124 ~~~n-----------p~vR~~alswL~~L~svp~--~-----------------------~-Li~yLp~fL~gLf~lLsD 166 (666)
..+. ..+|.-+-+.+..+.+.-. . + -.....+.++.+.+.++-
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6332 1445444445554432111 1 1 122333344555555543
Q ss_pred CCh--------hHHHHHHHHHHHHHHHhhcC-----------------CCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 005975 167 SSH--------EIRQQADSALWEFLQEIKNS-----------------PSVDYGRMAEILVQRAASP-DEFTRLTAITWI 220 (666)
Q Consensus 167 ~~~--------eVR~~A~~~L~~fL~eI~~~-----------------~~~d~~~iI~iLl~~~~s~-d~~irl~Al~WL 220 (666)
..+ +-|+....+++.+-..-... --..+..+|.-|++.++.. ++..|..+..+|
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~sl 337 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESL 337 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 321 22333333333332211110 0123678899999988765 467899999999
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhc-CC--cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHH
Q 005975 221 NEFVKLGGDQLVPYYADILGAILPCIS-DK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRI 297 (666)
Q Consensus 221 ~~~i~l~~~~l~pylp~lL~~LL~~Ls-d~--~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~ 297 (666)
..+++..-..--.=-++|+.-|...+. |+ .|++-....... .++.+..+.. ..+-.. .+-.+.-....--.|.
T Consensus 338 A~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~-gILsl~k~~~-~~~~~~--~~~~~~~~~~a~I~Rr 413 (441)
T PF12054_consen 338 ARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKD-GILSLRKEED-KADHAD--AASEEREQKEARIQRR 413 (441)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhh-cccchhhhcc-cccccc--cccchhhhhhhHHHhc
Confidence 999987543322235788888888775 33 233331111111 1111111100 000000 0000011112234577
Q ss_pred HHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 298 EALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 298 aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
.|...|..|+.+++++++.-+|.+-
T Consensus 414 GA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 414 GAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred CHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 7888999999999999988777654
No 323
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=50.83 E-value=31 Score=34.35 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005975 153 LPDFLDGLFNMLSDSSHE-IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 153 Lp~fL~gLf~lLsD~~~e-VR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l 231 (666)
.|+-++.++....=.+++ |+.+ .+.|. .=+.++....++.|-.... |+.||..|+.|+. +.+.+.+
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~-~~ll~-------~W~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~---~~~d~~l 108 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQA-LSLLK-------KWAPLDPEDALELLSPKFP--DPFVRAYAVERLE---SASDEEL 108 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHH-HHHHH-------cCCCCCHHHHHHHhCccCC--CHHHHHHHHHHHH---hCCHHHH
Confidence 445555555555555555 4433 22222 2244677777777776555 7899999999996 5777889
Q ss_pred ccchHhHHHHH
Q 005975 232 VPYYADILGAI 242 (666)
Q Consensus 232 ~pylp~lL~~L 242 (666)
.-|+|+++.++
T Consensus 109 ~~yLpQLVQaL 119 (184)
T smart00145 109 LLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 324
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.58 E-value=3.5e+02 Score=29.11 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=62.1
Q ss_pred chHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcC
Q 005975 152 FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVK-LGG 228 (666)
Q Consensus 152 yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~~~d-~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~-l~~ 228 (666)
--+.+++++..++.. .|+....+...++..-+..+ ..+ -+.+++.+.+-+.++.+-+|..-+.++.+.+. ...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 456778888877755 78878888777777777655 122 27789999999999988888876666655554 122
Q ss_pred cccccchHhHHHHHhhhh
Q 005975 229 DQLVPYYADILGAILPCI 246 (666)
Q Consensus 229 ~~l~pylp~lL~~LL~~L 246 (666)
....++...++|.++..+
T Consensus 95 ~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345556666666666555
No 325
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=50.19 E-value=37 Score=30.37 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-cccchHhHHHHHhhhhcCC
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDK 249 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~-l~pylp~lL~~LL~~Lsd~ 249 (666)
.++.++.++...+.+-.++||..|+..++.+++..|+. +..+..++++..+..++..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 45667778888888889999999999999999999988 6778999999999888865
No 326
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=50.15 E-value=1.2e+02 Score=32.01 Aligned_cols=146 Identities=19% Similarity=0.280 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHh
Q 005975 210 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (666)
Q Consensus 210 ~~irl~Al~WL~~~i~l~~~~l~pyl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~ 287 (666)
|..|++++.-|+.+++......+.|+ .+++|..+..|....+--+.+|.-..+.++ .+ +
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL---~d-------d--------- 170 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL---LD-------D--------- 170 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH---HS-------H---------
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH---cc-------h---------
Confidence 56899999999999988777777774 578899998887765555555554433322 11 1
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccc
Q 005975 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~ 367 (666)
.+|..++.-+++.- .+..-+..++..+ ..++++++.+...+.-.++|+|..--+.+-..|...+++
T Consensus 171 ----------~GL~yiC~t~eRf~-av~~vL~~mV~~l---~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd 236 (262)
T PF04078_consen 171 ----------VGLNYICQTAERFF-AVAMVLNKMVEQL---VKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRD 236 (262)
T ss_dssp ----------HHHHHHTSSHHHHH-HHHHHHHHHHHHH---HHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTS
T ss_pred ----------hHHHHHhcCHHHHH-HHHHHHHHHHHHH---ccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhc
Confidence 12222222221110 0111122222222 346788888888888888888766666666666666665
Q ss_pred c--chhhhhH--HHHHHHHHhccCC
Q 005975 368 D--NSLLEKR--GALIIRRLCVLLD 388 (666)
Q Consensus 368 d--~~lLe~R--g~~IIR~Lc~~L~ 388 (666)
+ ...+++= ..-+..||..+++
T Consensus 237 ~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 237 GTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp STTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 5 3333221 1225555555543
No 327
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=48.88 E-value=2.8e+02 Score=27.47 Aligned_cols=129 Identities=13% Similarity=0.128 Sum_probs=79.6
Q ss_pred chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHh
Q 005975 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-----EATRIEALHWISTLLN 308 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~-----~~tR~aaL~WL~~L~~ 308 (666)
...+++..+++..+..-+.+|..|.++...++..-...-..++. .+.|...+..+. |..=..+..-+..+..
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~---~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPH---REELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCc---HHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 35678888999888888999999999988777322110011111 123333332211 2222222222223322
Q ss_pred hChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccch
Q 005975 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNS 370 (666)
Q Consensus 309 ~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~ 370 (666)
. -.|-..++.-+.-+...-++.+++.+-..|-.+. .+...+..++..|++.|+++.+
T Consensus 81 ~-----~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~ 141 (193)
T PF12612_consen 81 L-----PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLR 141 (193)
T ss_pred c-----HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCC
Confidence 2 1566677778888888888888888777766665 4567788899999998876644
No 328
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=48.29 E-value=6.9e+02 Score=31.85 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhc-------c--hhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHH------HHHHhhcccccccH
Q 005975 49 RYYACEALYNIAKVVR-------G--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDR------LVKDIVTESDQFSI 112 (666)
Q Consensus 49 R~~A~eaL~nI~Kv~r-------~--~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~Ldr------LlKDIv~e~~~f~L 112 (666)
=..+.+||.|+++.-. . ..++.|+-++..| ..-.++.+..-| +.+.+ .+.++++.. .
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~l---r~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~---v- 1814 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYL---RCRKHPKLQILALQVILLATANKECVTDLATCN---V- 1814 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHH---HHcCCchHHHHHHHHHHHHhcccHHHHHHHhhh---H-
Confidence 3567899999876533 1 2346665555444 234555566655 33332 233333221 2
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhh-------hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-------LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~L-------i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
+-.|+..+ +.-|..|+.++.-++.+.+.+.+.- +.|+++++ + ..+++.+|.+|.++++.+..
T Consensus 1815 ---L~~LL~lL-HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~---c---~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1815 ---LTTLLTLL-HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSIL---C---LTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred ---HHHHHHHH-hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHH---h---ccCcHHHHHHHHHHHHHhhh
Confidence 23333333 3678999999999999998886532 23343332 2 33567789888888887764
No 329
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.00 E-value=2.4e+02 Score=29.78 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHH
Q 005975 206 ASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSI 283 (666)
Q Consensus 206 ~s~d~~irl~Al~WL~~~i~l~~~~l~py--lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~ 283 (666)
..+.|..|++++.-|..+++.+...+..| ..+++|..++.|....+.-+.+|.-..+.++
T Consensus 135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl------------------ 196 (293)
T KOG3036|consen 135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL------------------ 196 (293)
T ss_pred CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh------------------
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 005975 284 ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL-KALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLV 362 (666)
Q Consensus 284 L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL-~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL 362 (666)
.-...|..++..++++ .+...++.-++ ...+.+++.+.+.+.++.-+.++|..-=..+=..|.
T Consensus 197 -----------ldD~GL~YiCqt~eRF-----~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clP 260 (293)
T KOG3036|consen 197 -----------LDDVGLYYICQTAERF-----SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLP 260 (293)
T ss_pred -----------hccccHHHHHHhHHHH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCc
Q ss_pred hhcccc--chhhhhHHHH--HHHHHhccCC
Q 005975 363 HNFRVD--NSLLEKRGAL--IIRRLCVLLD 388 (666)
Q Consensus 363 ~lf~~d--~~lLe~Rg~~--IIR~Lc~~L~ 388 (666)
+.+.++ ..++++-++- +.+||-.+++
T Consensus 261 d~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 261 DQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred chhccchHHHHHhcChhHHHHHHHHHHHhc
No 330
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=47.55 E-value=3.1e+02 Score=27.61 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=95.5
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
...+..|+..-+.+++=+.|++|+.|.. +.++.+. .+.+.....+....+++.-+.|..|+.++........
T Consensus 7 a~~m~~y~k~~~~f~Gv~~P~~R~lak~----~~~~~~~---~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~- 78 (208)
T cd07064 7 AAAMKAYMKNQFPFYGIKTPERRALSKP----FLKESKL---PDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLT- 78 (208)
T ss_pred HHHHHHHHhcCCccCCCChHHHHHHHHH----HHHHcCC---CcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCC-
Confidence 3455666666677888899999998743 3333321 1233444444445566667899999988876443322
Q ss_pred ccccchHhHHHHHhhhhcCCc--HHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHH
Q 005975 230 QLVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-EATRIEALHWISTL 306 (666)
Q Consensus 230 ~l~pylp~lL~~LL~~Lsd~~--~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~-~~tR~aaL~WL~~L 306 (666)
+.-++.+...+.+-+ +-+=..|..+.+.+. . +.+...+.+.+-..+++ |.-|.|.+..+. .
T Consensus 79 ------~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~---~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~-~ 142 (208)
T cd07064 79 ------PEDLPLLEELITTKSWWDTVDSLAKVVGGILL---A------DYPEFEPVMDEWSTDENFWLRRTAILHQLK-Y 142 (208)
T ss_pred ------HHHHHHHHHHHcCCchHHHHHHHHHHHhHHHH---h------CChhHHHHHHHHHcCCcHHHHHHHHHHHHH-H
Confidence 222333333333221 111222333322221 1 12344556666667777 555555543322 2
Q ss_pred HhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHH
Q 005975 307 LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 358 (666)
Q Consensus 307 ~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~F~~fm 358 (666)
.+. ...+.++..+...+.|+..-|.+-.-|.|..++. +.+--..|+
T Consensus 143 ~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 143 KEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 221 1234556666666777766666666799999995 333334444
No 331
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=47.28 E-value=7.3e+02 Score=31.80 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHH
Q 005975 173 QQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEK 252 (666)
Q Consensus 173 ~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~e 252 (666)
..+..+|..++.. + .++.+..+++|.+.++.+..-...-+.+.+.- .+...--.++++...|-.+++++.+
T Consensus 488 ~lgr~AL~nLL~~-------N-~dLl~~~IdrCYss~~~va~gYF~vlaev~~~-~~~~~~~~~~LL~L~Lfklg~~~~e 558 (1120)
T PF14228_consen 488 SLGRRALKNLLEH-------N-PDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSE-REYPPCPFWELLNLVLFKLGDESSE 558 (1120)
T ss_pred HHHHHHHHHHHHh-------h-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc-CCCCCCCHHHhHHHHHHhhcCCcHH
Confidence 4466777777751 1 34889999999998866543333333333221 1222223669999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005975 253 IRVVARETNEEL 264 (666)
Q Consensus 253 IR~~A~~~n~~L 264 (666)
||..|.+....+
T Consensus 559 IR~~A~qLL~~L 570 (1120)
T PF14228_consen 559 IRSKAMQLLRAL 570 (1120)
T ss_pred HHHHHHHHHHHH
Confidence 999998876544
No 332
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=47.14 E-value=2.8e+02 Score=26.94 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=69.3
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
....++.|.+.+. +..|+.+--.++..+-. .....-|.+ +-+.+++.|.+.=+|+++..++..+...
T Consensus 69 ~~~~~~~~~~~i~---~~~~W~~~D~~~~~~~~-------~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~-- 135 (197)
T cd06561 69 KEEDLERFEPWIE---YIDNWDLVDSLCANLLG-------KLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK-- 135 (197)
T ss_pred CHHHHHHHHHHHc---CCchHHHHHHHHHHHHH-------HHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh--
Confidence 3445566666655 44555554444333321 111222222 6677888999998999888777666643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH
Q 005975 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (666)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp 236 (666)
.-+.+.+.+++-....+.++.+|...-.+|+++....++..++|+-
T Consensus 136 ---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 136 ---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred ---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 2467788888887788788888886666666666555555554443
No 333
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.71 E-value=6.6e+02 Score=31.11 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=93.8
Q ss_pred hhhhHHHhhhhhHHHHHhhcC-CCCHHHHHHHHH-HHHHHHHHhcchhhhhHHHHHHHHHHhhcC-Cch-hHHHHHHHHH
Q 005975 22 LFFYSETILQQIVPPVLNSFS-DQDSRVRYYACE-ALYNIAKVVRGDFIIFFNQIFDALCKLSAD-SDA-NVQSAAHLLD 97 (666)
Q Consensus 22 ~~~~~~~yl~~Il~pVL~~~~-D~d~rVR~~A~e-aL~nI~Kv~r~~il~~f~eIfd~L~kl~~D-~d~-~Vr~gA~~Ld 97 (666)
+|..+-..+..-+...++.-. |++.--|--||- .+..|+....+.--.+++.+|......-.+ ..+ -++...+.++
T Consensus 455 lgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~ig 534 (982)
T KOG2022|consen 455 LGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIG 534 (982)
T ss_pred HhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHH
Confidence 444444444444444444443 666666666653 333344433334445666666555422111 112 2233334555
Q ss_pred HHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC--ChhHHHHH
Q 005975 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQA 175 (666)
Q Consensus 98 rLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~--~~eVR~~A 175 (666)
.++.-... ..+.++.-+|.|.+.++ ++..-.-+++-+..++.-...++.+|...|+..+-..+.-. .+.+|...
T Consensus 535 s~s~~l~e--~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~kl 610 (982)
T KOG2022|consen 535 SLSNWLGE--HPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKL 610 (982)
T ss_pred HHHHHHhc--CCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHH
Confidence 54443322 24568888999998886 66777777778999999888899999998888776665432 34566666
Q ss_pred HHHHHHHHHHh
Q 005975 176 DSALWEFLQEI 186 (666)
Q Consensus 176 ~~~L~~fL~eI 186 (666)
-++++-++..+
T Consensus 611 m~sIGyvls~~ 621 (982)
T KOG2022|consen 611 MKSIGYVLSRL 621 (982)
T ss_pred HHHHHHHHHhc
Confidence 66666666544
No 334
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.79 E-value=1.4e+02 Score=26.81 Aligned_cols=70 Identities=20% Similarity=0.189 Sum_probs=49.5
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchH--HHHHHHHHh-----c-CCCChhHHHHHHHHHH
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNM-----L-SDSSHEIRQQADSALW 180 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp--~fL~gLf~l-----L-sD~~~eVR~~A~~~L~ 180 (666)
.....+..|..|+...||.+.+.++.-+..+.+-.+..+..++- .|+..+.+. . .|.+..||..+.+++.
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 35567778889999999999999999999888877766654442 344444331 2 3467889988766554
No 335
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=44.31 E-value=1.2e+02 Score=38.35 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 208 ~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
+|.+||..|+.||. .++.+.++.|+|+++.++---+-...+-+|..-.++.+
T Consensus 902 PDqeVR~~AVqwi~---~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~ 953 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIA---RLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLV 953 (1639)
T ss_pred CcHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 58899999999997 56788899999999988765554455556655555443
No 336
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=44.26 E-value=49 Score=32.59 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005975 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (666)
Q Consensus 154 p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p 233 (666)
|.-++.+++...=.+++-...+.+ ++. +=+.++...-++.|-... +|+.||..|+.|+. ..+++.+..
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~----lL~---~W~~i~~~~aLeLL~~~f--~d~~VR~yAV~~L~---~~sd~eL~~ 105 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQ----LLK---RWPKLKPEQALELLDCNF--PDEHVREFAVRCLE---KLSDDELLQ 105 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHH----HHH---CCCCCCHHHHHHHCCCcC--CCHHHHHHHHHHHH---hCCHHHHHH
Confidence 555555555565555433333322 222 223456666666665444 36999999999997 577889999
Q ss_pred chHhHHHHHhh
Q 005975 234 YYADILGAILP 244 (666)
Q Consensus 234 ylp~lL~~LL~ 244 (666)
|+|+++.++--
T Consensus 106 yL~QLVQaLKy 116 (171)
T cd00872 106 YLLQLVQVLKY 116 (171)
T ss_pred HHHHHHHHHHc
Confidence 99999887544
No 337
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=44.19 E-value=3.1e+02 Score=27.48 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=67.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC----CchhHHHHHHHHHHHHHHhhcc-----cccc
Q 005975 40 SFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD----SDANVQSAAHLLDRLVKDIVTE-----SDQF 110 (666)
Q Consensus 40 ~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D----~d~~Vr~gA~~LdrLlKDIv~e-----~~~f 110 (666)
...|++...--.+|..|.|+++.-.+ -..|+....+ ....+...+..+++|++-++.. ...-
T Consensus 3 ~i~~~~~~~adl~~MLLsNlT~~~~~---------~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~ 73 (192)
T PF04063_consen 3 YITDPKSPLADLACMLLSNLTRSDSG---------CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKD 73 (192)
T ss_pred eecCCCcchHHHHHHHHHHhccchHH---------HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCc
Confidence 45688888888899999999863221 1112222222 1223333334566666666651 1233
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
..+.+.+.+...- .-|..|++++.- -.+.+ .+..|.-++.-++..-|.++..++...+=
T Consensus 74 ~~~yla~vl~NlS--~~~~gR~~~l~~------------~~~~~-~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 74 NYDYLASVLANLS--QLPEGRQFFLDP------------QRYDG-PLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred chhHHHHHHHHhc--CCHHHHHHHhCc------------hhhhh-HHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 4566666666543 678899988621 11121 56666667766755555556555555553
No 338
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=43.87 E-value=39 Score=32.56 Aligned_cols=133 Identities=16% Similarity=0.128 Sum_probs=83.2
Q ss_pred HHhhhhcC--CcHHHHHHHHHHHHHHHHhhCCCCCCCCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhh
Q 005975 241 AILPCISD--KEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (666)
Q Consensus 241 ~LL~~Lsd--~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~ 317 (666)
.++..+.. ..+++|..|.-+...+++..++ ++ +.+-+.+...+.....+..+.++..+.+++...|+-..+.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~-----~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAARE-----EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 44555543 4578898888777776644332 12 2334456666666666689999999999999988866553
Q ss_pred --hHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHhhccccchhhhhHHHHH
Q 005975 318 --LNDIFDTLLKALS--DPSDEVVLLVLEVHACIAKD-------LQHFRQLVVFLVHNFRVDNSLLEKRGALI 379 (666)
Q Consensus 318 --l~~l~p~LL~~Ls--D~s~eVv~~~l~lLa~Is~~-------~~~F~~fm~~LL~lf~~d~~lLe~Rg~~I 379 (666)
.+++.+.+++..+ .++..+...++++++.-|.+ .+++.++++.+.+.-+++. ..+.|+.++
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~-~ir~~A~v~ 153 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDS-EIRVLAAVG 153 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH--CHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHH
Confidence 3467777777777 55666777888999988843 2445555555554333332 134454444
No 339
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=43.81 E-value=1.8e+02 Score=29.91 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh-----hcccc--cccHhhhHHHHHHhhc--CCCHHHHHHHHHHHHH
Q 005975 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-----VTESD--QFSIEEFIPLLRERMN--VLNPYVRQFLVGWITV 140 (666)
Q Consensus 70 ~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDI-----v~e~~--~f~L~~fIPlL~eri~--~~np~vR~~alswL~~ 140 (666)
.-..||++||+.+.-.....|+-|+.+...++.. ..... ...-+.-+--....+. ...-+.|.|+|+..+.
T Consensus 67 ~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~L 146 (216)
T PF11264_consen 67 DKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRL 146 (216)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4578999999988655556777776655554422 11110 1112222333334442 2345889999999998
Q ss_pred hhcCCchhh--hhchHHHHHHHHHhcCCCChhHHH
Q 005975 141 LDSVPDIDM--LGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 141 L~svp~~~L--i~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
|....+... -...|+.+..|...++=+...|.+
T Consensus 147 Le~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~k 181 (216)
T PF11264_consen 147 LELAGADLVKDEEKRPEALEKLSEALGLSKEKVEK 181 (216)
T ss_pred HHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHh
Confidence 877665222 246788888888777776655553
No 340
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.55 E-value=25 Score=23.77 Aligned_cols=28 Identities=32% Similarity=0.216 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC
Q 005975 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (666)
Q Consensus 47 rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D 84 (666)
.||+.|+++|.++.. ++..+.|.+++.|
T Consensus 2 ~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 589999999988731 3445556555554
No 341
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=43.37 E-value=62 Score=31.18 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH
Q 005975 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (666)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~L 242 (666)
+.++....++.|-.... |+.||..|+.++. +.+.+++.-|+|+++.++
T Consensus 67 ~~~~~~~aL~LL~~~~~--~~~vr~yAv~~L~---~~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 67 APLSPEDALELLSPKYP--DPVVRQYAVRVLE---SASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCCCHHHHHHHcCCcCC--CHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHH
Confidence 34566666666665544 5999999999997 467788999999998877
No 342
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=43.24 E-value=1.6e+02 Score=35.82 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=24.4
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~ 320 (666)
.+++++.|...+..+....-..++..|....++...+....+++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666666665554443334455566666666666655555444
No 343
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.04 E-value=9.2e+02 Score=31.79 Aligned_cols=137 Identities=18% Similarity=0.295 Sum_probs=79.2
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhcCCC---CHHHHHHHHHHHHH---
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASP---DEFTRLTAITWINE--- 222 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d-~~~iI~iLl~~~~s~---d~~irl~Al~WL~~--- 222 (666)
--|+|.++. +-....|..++||+.+-+.+-..+.+-+.....+ ++.+.. ++-.+-+. +...+ .--+|+.+
T Consensus 1170 ~~wfP~l~~-ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~-~~~eW~~tT~~ 1246 (1514)
T KOG0929|consen 1170 SGWFPMLFQ-LSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES-EKDEWLSTTCN 1246 (1514)
T ss_pred eeeehhHhh-hhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh-hhhHHHHHHHH
Confidence 446666554 4455569999999999999888887665543333 466666 33222111 11111 11125543
Q ss_pred -----HHHhc---CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC
Q 005975 223 -----FVKLG---GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 289 (666)
Q Consensus 223 -----~i~l~---~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~ 289 (666)
++.+. -..+-+-+|+++..+..|+.-++..+-..-..|...|+...+..-..-+.+++.+.+.+.+.
T Consensus 1247 ~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1247 HALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
Confidence 33321 22334558888888888888888777777777776666554432223345566665555443
No 344
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=42.72 E-value=4.8e+02 Score=28.43 Aligned_cols=221 Identities=19% Similarity=0.266 Sum_probs=127.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCCH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005975 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDY----GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (666)
Q Consensus 157 L~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~--~~~d~----~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~ 230 (666)
+..|.+.+.|-+-+-|+-+..+.+.+++-=... +.++| +++++.|+..-.. -+++.++|=..+.+.+...
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe--- 156 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE--- 156 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH---
Confidence 444555666666677777767777776532211 12232 6677888877333 4778888877887766531
Q ss_pred cccchHhHH------HHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC-CC--CCChHhH-HHHHHHhcCCCcHHHHHHHH
Q 005975 231 LVPYYADIL------GAILPCISDKEEKIRVVARETNEELRAIKADP-AD--GFDVGPI-LSIATRQLSSEWEATRIEAL 300 (666)
Q Consensus 231 l~pylp~lL------~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~-~~--~~dl~~i-l~~L~~~L~~~~~~tR~aaL 300 (666)
++.+++ ---..-+.-+..+|-.-|-.++.+++..=+.. ++ .-+++.. .++-...+.+++..||-.++
T Consensus 157 ---~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 157 ---FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred ---HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 112221 11122333344444444444444443211000 00 0123333 33466667889999999999
Q ss_pred HHHHHHHhhChH--HHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc---h----H---HHHHHHHHhhcc
Q 005975 301 HWISTLLNRHRT--EVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ---H----F---RQLVVFLVHNFR 366 (666)
Q Consensus 301 ~WL~~L~~~~p~--~i~~~l~--~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~---~----F---~~fm~~LL~lf~ 366 (666)
..++.++-.-++ .|..|.. .=+..++..|.|++..+.-.|..+..-...|.. - | ++=+..+++-|+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~ 313 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFH 313 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhC
Confidence 999998887654 5777877 667788888999999988888887776664321 1 1 112233344444
Q ss_pred cc----chhhhhHHHHHHHHHhc
Q 005975 367 VD----NSLLEKRGALIIRRLCV 385 (666)
Q Consensus 367 ~d----~~lLe~Rg~~IIR~Lc~ 385 (666)
+| ...+.+| +++|++.-.
T Consensus 314 ~d~~~DeqF~dEk-~~~i~eI~~ 335 (342)
T KOG1566|consen 314 TDRTEDEQFLDEK-AYLIKEIRQ 335 (342)
T ss_pred CCCCchhhhhhhH-HHHHHHHHh
Confidence 44 3566666 666666543
No 345
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=42.70 E-value=1.8e+02 Score=37.06 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hh------------hhhH
Q 005975 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DF------------IIFF 71 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~i------------l~~f 71 (666)
+-|+.|...++ ......+++.++..++-.+.+..+-||..|.+-|-|++-.... .+ -...
T Consensus 937 lifL~dl~~~~-------~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l~~~~~~l~e~~~s~~~~~~~i 1009 (1120)
T PF14228_consen 937 LIFLVDLAVEP-------DEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSLAPSKLELPEVDDSDSEQKQSI 1009 (1120)
T ss_pred HHHHHHHHcCC-------cchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHH
Confidence 34566666665 4567889999999999999999999999999999998654311 10 0122
Q ss_pred HHHHHHHHHh-------hcCCc---hhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhc------CCCHHHHHHHH
Q 005975 72 NQIFDALCKL-------SADSD---ANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN------VLNPYVRQFLV 135 (666)
Q Consensus 72 ~eIfd~L~kl-------~~D~d---~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~------~~np~vR~~al 135 (666)
.++++.+-.- ..|.. ..++ .+..++.++..++.- | .+.|-|.+.-. ...-.+|-.||
T Consensus 1010 ~~li~~l~~~~~~~lW~yeD~~~~~~~~~-s~~~l~~lv~~vv~~---~---~~~~~L~~~W~~~AL~WATsC~vRHlAc 1082 (1120)
T PF14228_consen 1010 KSLIEFLRSRDGSPLWSYEDSSGKRTEIP-SPKQLSSLVRSVVEV---F---SFQPDLREQWGRVALNWATSCPVRHLAC 1082 (1120)
T ss_pred HHHHHHHHhcCCCccccCCCCCccCCCCC-CHHHHHHHHHHHHHH---h---cCChHHHHHHHHHHHHHHhcCchHHHHH
Confidence 3333333210 11111 1112 234566676666631 1 13466666553 22336788888
Q ss_pred HHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhH
Q 005975 136 GWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEI 171 (666)
Q Consensus 136 swL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eV 171 (666)
-...+|-.+..---..-+-++|..|-+.++|+.+||
T Consensus 1083 RSfQIFR~L~~~l~~~ml~dlL~rL~~~~~~~~~~v 1118 (1120)
T PF14228_consen 1083 RSFQIFRALLPSLDSDMLADLLARLSKTISDPSPEV 1118 (1120)
T ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHHHHhCCCcccc
Confidence 888877654332223456788999999999999987
No 346
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=42.57 E-value=1.9e+02 Score=35.69 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=25.5
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
..+.+.|.+.+..++...--.++.++.....+........+++++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555555554433333344566777777776666666666654
No 347
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=42.24 E-value=3.2e+02 Score=26.28 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 126 LNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 126 ~np~vR~~alswL~~L~sv-p~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
.+...-..++.++..+.+. .|.+.+-.-|.++..|...+..++..+|..|.+.|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5566777788899987654 456677778999999999999999999999988887664
No 348
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=42.14 E-value=28 Score=33.84 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC--CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC
Q 005975 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 290 (666)
Q Consensus 213 rl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd--~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~ 290 (666)
|...+.|+.+|+..+|.. .+-.++..+...-.. .+.++...+-+|...++..-..-...+.....++.+...+.+
T Consensus 93 rt~~~~Wv~~Fl~~~G~~---~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 93 RTNPISWVQEFLELGGLE---ALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHS-HHHHHHH-HHHHHH---HHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred ccCCchHHHHhccCCCHH---HHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 444578999999987733 223333333333222 334555555666554432100000012235678899999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 005975 291 EWEATRIEALHWISTLL 307 (666)
Q Consensus 291 ~~~~tR~aaL~WL~~L~ 307 (666)
++..+|..+++-|..+.
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887664
No 349
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.09 E-value=3.2e+02 Score=31.43 Aligned_cols=73 Identities=19% Similarity=0.372 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-CCChhHHH
Q 005975 95 LLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQ 173 (666)
Q Consensus 95 ~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLs-D~~~eVR~ 173 (666)
.+++++|-| ..+.++.+|...|...++..+..++.|+.- ..+++.|...|+ +.+.++..
T Consensus 22 ~v~~llkHI-------~~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~ 81 (475)
T PF04499_consen 22 FVDNLLKHI-------DTPAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQS 81 (475)
T ss_pred HHHHHHHhc-------CCcHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHH
Confidence 455566633 467788888888888889999999999973 233445555554 34556777
Q ss_pred HHHHHHHHHHHHhh
Q 005975 174 QADSALWEFLQEIK 187 (666)
Q Consensus 174 ~A~~~L~~fL~eI~ 187 (666)
.|+.+|.+++..-.
T Consensus 82 naa~~L~aII~is~ 95 (475)
T PF04499_consen 82 NAADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHHHHHhh
Confidence 77666666665443
No 350
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.00 E-value=2.9e+02 Score=32.32 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=29.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
..++...|...+...+...-.+++..+.....+........+++++
T Consensus 180 ~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 180 QADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455555555554444445566777777777777777777776654
No 351
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=39.60 E-value=1.7e+02 Score=34.96 Aligned_cols=39 Identities=36% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR 64 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r 64 (666)
...|++.|+.-......|-+..+|..++..+..|++...
T Consensus 240 sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~ 278 (993)
T COG5234 240 SHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLP 278 (993)
T ss_pred hhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcc
Confidence 566899999999999999999999999999888876543
No 352
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.59 E-value=5.5e+02 Score=32.42 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=90.4
Q ss_pred hhhhhHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005975 66 DFIIFFNQIFDALC-KLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144 (666)
Q Consensus 66 ~il~~f~eIfd~L~-kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~sv 144 (666)
++..+++.+|+.++ .=.-|.+++.| |.++..+..-+..=.+.|-=+.++-.+--.+.+.+-.||.-.+..+.-|...
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IR--aiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIR--AICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHH--HHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 45567777777776 45579999999 4445555554544444555566677777888899999999999888877554
Q ss_pred Cc--hhhhhchHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 145 PD--IDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI 220 (666)
Q Consensus 145 p~--~~Li~yLp~fL~gLf~lL-sD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL 220 (666)
.. ..+-.+...|=+.+..|. -|-+..||...-..+.... . +..==++=|.++...+.+.++.++..|.+.+
T Consensus 357 ~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~--~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 357 DEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS--S---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--c---ccccChhHHHHHHHHHhccCcchHHHHHHHH
Confidence 21 234556777777788888 5556667765433222211 1 1110022244455555666666666555544
No 353
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=38.60 E-value=51 Score=32.30 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~ 244 (666)
.++....++.|-... +|+.||..|+.||. ..+.+.+.-|+|+++.++--
T Consensus 75 ~i~~~~aLeLL~~~f--~~~~VR~yAV~~L~---~~sd~eL~~yL~QLVQaLKy 123 (166)
T cd00870 75 KIDIEDALELLSPYF--TNPVVRKYAVSRLK---LASDEELLLYLLQLVQALKY 123 (166)
T ss_pred CCCHHHHHHHcCccC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHh
Confidence 456677777666554 47999999999998 47788899999999886654
No 354
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=37.99 E-value=21 Score=35.50 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=49.0
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
....|.-++.++..+.-.+++....+.+.|.. - +.++....++.|-.... |+.||..|+.|+. +.+++
T Consensus 40 l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~----W---~~~~p~~AL~LL~~~f~--~~~VR~yAv~~L~---~~~d~ 107 (184)
T PF00613_consen 40 LMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQ----W---PPISPEDALELLSPNFP--DPFVRQYAVRRLE---SLSDE 107 (184)
T ss_dssp HTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHT----S---HCTTHHHHHHCTSTT-----HHHHHHHHHHHC---TS-HH
T ss_pred hhhCchHHHHHHhhCCCCchhhHHHHHHHHHc----C---CCCCHHHHHHHHHhhcc--HHHHHHHHHHHHH---HcCch
Confidence 34456666677766666666533333333322 1 22455555555544333 5999999999996 46677
Q ss_pred ccccchHhHHHHHh
Q 005975 230 QLVPYYADILGAIL 243 (666)
Q Consensus 230 ~l~pylp~lL~~LL 243 (666)
++.-|+|+++.++-
T Consensus 108 ~l~~yLpQLVQaLr 121 (184)
T PF00613_consen 108 ELLFYLPQLVQALR 121 (184)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhe
Confidence 88888888888764
No 355
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=37.41 E-value=2e+02 Score=34.45 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=25.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~ 320 (666)
-+++...|...+..++...-..++..+.....+.+......++.
T Consensus 180 ~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldq 223 (647)
T PRK07994 180 VEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQ 223 (647)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35566666655533332233456667777777777766666554
No 356
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.34 E-value=2.6e+02 Score=26.49 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=52.6
Q ss_pred hHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHH-HHHhcCC---CCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDT-LLKALSD---PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~-LL~~LsD---~s~eVv~~~l~lLa~Is 348 (666)
-.+.+..|.+.+.+ .+..+..-||.-+-.+.+.|+..+...+. +.+.. |.+.+++ ...+|..+.++++..-+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 35788899999974 57778888999999999999988764332 23333 5555553 34588889998877766
No 357
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.07 E-value=19 Score=24.06 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc
Q 005975 48 VRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA 83 (666)
Q Consensus 48 VR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~ 83 (666)
||++|..+|.++.. ++-++.|.+.+.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 79999999877742 455666665544
No 358
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=36.16 E-value=4.8e+02 Score=26.54 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhh--cCCchhHHHHHHHHHHHHHHhhcc
Q 005975 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLS--ADSDANVQSAAHLLDRLVKDIVTE 106 (666)
Q Consensus 36 pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~-il~~f~eIfd~L~kl~--~D~d~~Vr~gA~~LdrLlKDIv~e 106 (666)
++.+.+...|..+|..|.+++.......... -..-+-.|+.+|+-++ +|....-++-|.-|+.++..+..+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 4567788999999999999998875442221 2233456677776443 787666666667777766655443
No 359
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=36.15 E-value=3.6e+02 Score=31.36 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC----------------------------CCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005975 251 EKIRVVARETNEELRAIKADPAD----------------------------GFDVGPILSIATRQLSSEWEATRIEALHW 302 (666)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~~~~~----------------------------~~dl~~il~~L~~~L~~~~~~tR~aaL~W 302 (666)
+|+.-....+-..|++.+.+++. .++.+.+...|..-+..++...=..||.|
T Consensus 126 DEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ 205 (515)
T COG2812 126 DEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSL 205 (515)
T ss_pred ecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHH
Confidence 45666666666777887776532 14557888888888888888888899999
Q ss_pred HHHHHhhChHHHhhhhHHHH
Q 005975 303 ISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~ 322 (666)
+...+++...+-...+|+.+
T Consensus 206 ia~~a~Gs~RDalslLDq~i 225 (515)
T COG2812 206 IARAAEGSLRDALSLLDQAI 225 (515)
T ss_pred HHHHcCCChhhHHHHHHHHH
Confidence 99999999888887777654
No 360
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.05 E-value=1.8e+02 Score=34.21 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=25.7
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
..++...|...+..++...-..++..+.....+........+++++
T Consensus 180 ~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 180 LQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3555555555554433333345666666666666666666665543
No 361
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=35.77 E-value=2.1e+02 Score=28.61 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=67.2
Q ss_pred hHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHh
Q 005975 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (666)
Q Consensus 25 ~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDI 103 (666)
.++.||..-.+.-|.+|||+-+.. |.+..........-+.|=.+..++.| +.+||.++ ++.|++++..
T Consensus 30 ~v~~FL~~PS~ekLl~LG~~rs~l----------i~qqvd~~d~~k~~e~~lKVsSv~~~-~~~vk~av~~~~Dall~ka 98 (183)
T PF07834_consen 30 TVATFLSSPSPEKLLQLGDKRSQL----------IAQQVDTSDPEKVAEAFLKVSSVYND-ESEVKSAVLQCIDALLKKA 98 (183)
T ss_dssp HHHHHHHS--HHHHHCTGTTHHHH----------HHHCS-TTSHHHHHHHHHHHHCT--S-SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCHHHHHHhChHHHHH----------HHHHHccccHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777762221 22211111112223333344444555 58999998 8999999988
Q ss_pred hcccccccHhhhHHHHHHhhc---CCCHHHHHH--HHHHHHHhhcCCchhhhhchHHHHHHHHH-hcCCCCh
Q 005975 104 VTESDQFSIEEFIPLLRERMN---VLNPYVRQF--LVGWITVLDSVPDIDMLGFLPDFLDGLFN-MLSDSSH 169 (666)
Q Consensus 104 v~e~~~f~L~~fIPlL~eri~---~~np~vR~~--alswL~~L~svp~~~Li~yLp~fL~gLf~-lLsD~~~ 169 (666)
.... .+....|+..|+=.|+ ..| .++.. +=+.+..|..+.. -.|+|.....+++ +++-|++
T Consensus 99 Fs~~-~~~~~~f~n~LLV~mGLLKsEd-K~k~i~~l~G~l~~Leh~vq---q~YFp~~~~~~L~aFlsKp~~ 165 (183)
T PF07834_consen 99 FSSA-SFQSNSFLNSLLVHMGLLKSED-KFKPISNLPGPLLALEHAVQ---QDYFPKSTRPLLQAFLSKPNK 165 (183)
T ss_dssp HCST-TS-HHHHHHHHHHHTTSSSSSS-HHHHHSHHHHHHHHHHHHCC---STTS-GGGHHHHHHHHCSCCC
T ss_pred Hhcc-ccchHHHHHHHHHHhccccccc-ccCCCCCCchHHHHHHHHhh---hhhccHHHHHHHHHHHcCCcc
Confidence 8654 3467777788777776 344 43321 1122222222222 2588887777654 4455553
No 362
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=35.05 E-value=5.7e+02 Score=30.72 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=86.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH
Q 005975 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (666)
Q Consensus 157 L~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp 236 (666)
+..||.++.-++-.|...+...+.+.+..-+. +-+++.|+++--+....... ..++.+. -|+--
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~y~~~t~s~~~~------~il~~~~----~P~~K 69 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDRE------PWLVNGLVDYYLSTNSQRAL------EILVGVQ----EPHDK 69 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccch------HHHHHHHHHHHhhcCcHHHH------HHHHhcC----CccHH
Confidence 45577777777777777766666666542211 24555666553333322111 1122221 23333
Q ss_pred hHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC---hHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChH
Q 005975 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 237 ~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L-~~~~~~tR~aaL~WL~~L~~~~p~ 312 (666)
.++..|=.++... +-|..|-.....+.+. .+..+. -.++++.|.+.| .|.+..+-.+|+.-|++|.-+.|.
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~---qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVRS---QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHhc---CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 4444444555543 3455454444433322 111111 124454444444 567788899999999999999999
Q ss_pred HHhhhhHHHHHHHHHhc
Q 005975 313 EVLHFLNDIFDTLLKAL 329 (666)
Q Consensus 313 ~i~~~l~~l~p~LL~~L 329 (666)
.+.+|++++|......+
T Consensus 145 ~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999887776
No 363
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=1.2e+03 Score=30.65 Aligned_cols=231 Identities=17% Similarity=0.129 Sum_probs=117.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH---HhhcCCchh-HHHHHHHHHHHHHHhhccccccc
Q 005975 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC---KLSADSDAN-VQSAAHLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 36 pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~---kl~~D~d~~-Vr~gA~~LdrLlKDIv~e~~~f~ 111 (666)
.-+.-+..+..+||--..+++.+|..-+....+.-|..+|.-|- ..-...+.+ ||-|=..|.=+.-|.....+.-.
T Consensus 846 l~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sc 925 (1610)
T KOG1848|consen 846 LEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSC 925 (1610)
T ss_pred HHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHH
Confidence 33455566667777777788888877655544444555555444 222222333 33332443333333333221111
Q ss_pred HhhhHHHHHHhh---------------------------c-CCCHHHHHHHHHHHHHhhcCCchhh-hhchHH-HHHHHH
Q 005975 112 IEEFIPLLRERM---------------------------N-VLNPYVRQFLVGWITVLDSVPDIDM-LGFLPD-FLDGLF 161 (666)
Q Consensus 112 L~~fIPlL~eri---------------------------~-~~np~vR~~alswL~~L~svp~~~L-i~yLp~-fL~gLf 161 (666)
+-.+|..+...- . ..+-.-.+..++-++. +.+.... -.-+.- ++.-|.
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~ 1003 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLA 1003 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHH
Confidence 222222222211 1 1222222333333332 2222221 122222 234455
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-CH----HHHHHHHHHhcCCC------CHHHH----HHHHHHHHHHHHh
Q 005975 162 NMLSDSSHEIRQQADSALWEFLQEIKNSPSV-DY----GRMAEILVQRAASP------DEFTR----LTAITWINEFVKL 226 (666)
Q Consensus 162 ~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~-d~----~~iI~iLl~~~~s~------d~~ir----l~Al~WL~~~i~l 226 (666)
++-.|.-.+||+.|++.+-+.+..=..+-.. -+ -.+|..|++...++ .++++ .+++.-|.-+.++
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 7778899999999998666555432222111 12 23444444432222 13442 3455566666665
Q ss_pred cCc---------ccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 227 GGD---------QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 227 ~~~---------~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
.++ ++..-+..++.-+....+|..+|+...|-++.+++...+
T Consensus 1084 f~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1084 FSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 443 333446677777888889999999999999999886554
No 364
>PHA01351 putative minor structural protein
Probab=34.64 E-value=4.8e+02 Score=31.35 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHHhccchhHHHHHHHHHhc
Q 005975 404 ADLDFACTMVQALNLILLTSSELSELRDLLKKS 436 (666)
Q Consensus 404 ~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~ 436 (666)
-|.++..+.+-.=+...-|+.|+..+...||+.
T Consensus 607 idKe~i~klin~Y~ql~qt~~eIkYIqe~LK~f 639 (1070)
T PHA01351 607 IIKEYEDAFINFYNQELQISAFLTILKSQLRQF 639 (1070)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566666655555566666777777777763
No 365
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.58 E-value=2e+02 Score=29.44 Aligned_cols=130 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHh---
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH--EIRQQADSALWEFLQEI--- 186 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~--eVR~~A~~~L~~fL~eI--- 186 (666)
...++-.+.+- .+.+..+-..+++++...........-.-+++||.++.-.-.+.+. ++-......++.|.+++
T Consensus 77 y~r~i~~~~~~-~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~~~~ 155 (219)
T PF14677_consen 77 YWRCISRLSEV-EDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQRELENF 155 (219)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhh-cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHHHHhhc
Q ss_pred --hcCCCCC------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHh
Q 005975 187 --KNSPSVD------YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 243 (666)
Q Consensus 187 --~~~~~~d------~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL 243 (666)
....... +-.++..|..++.-.++..- .+..|+..|++-..-.=..+.+.++..++
T Consensus 156 ~s~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~~-q~~~W~~~~ck~~~l~d~~~~k~ll~lLf 219 (219)
T PF14677_consen 156 LSSEEEDFNSKEAVLLVNILSQLSDHLDPSSDQFT-QMLSWTLKFCKENSLEDSSFCKGLLSLLF 219 (219)
T ss_dssp HHS--SS--SHHHHHHHHHHHHHTTSS-SSSSHHH-HHHHHHHHHHHS---S-HHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHhC
No 366
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=34.58 E-value=6.6e+02 Score=27.65 Aligned_cols=219 Identities=16% Similarity=0.084 Sum_probs=110.7
Q ss_pred chhHHHHH-HHHHHHHH--HhhcccccccHhhhHHHHHHhhcCCC-H-HHHHHHHHHHHHhhcCCchhhhhchHHHHHHH
Q 005975 86 DANVQSAA-HLLDRLVK--DIVTESDQFSIEEFIPLLRERMNVLN-P-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (666)
Q Consensus 86 d~~Vr~gA-~~LdrLlK--DIv~e~~~f~L~~fIPlL~eri~~~n-p-~vR~~alswL~~L~svp~~~Li~yLp~fL~gL 160 (666)
+.++-..| .+|.-++- +|+...+.-....++-...+.+.+++ | .+-...+..+. ..+.+..-+....++-+-..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls-~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLS-DQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCCcccchhhHHHHHHH
Confidence 45555566 55555542 34433222223356666666664432 3 22232333332 34455444455556655555
Q ss_pred HHhcCC--CChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhH
Q 005975 161 FNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI 238 (666)
Q Consensus 161 f~lLsD--~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~l 238 (666)
..-+.| ++..|-...-.++..|+.-.+.....+.+.=++.++..+-+....+|..|+....+.....+.. ..+.+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~--~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN--KELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh--HHHHHH
Confidence 555555 4556666666777777765543222234445667777777778888888877776654433211 112222
Q ss_pred HHHHhhhhcCCcHHHHHHHHHHHHH-----------------HHHhhCCC-CCCCC-hHhHHHHHHHhcCCCcHHHHHHH
Q 005975 239 LGAILPCISDKEEKIRVVARETNEE-----------------LRAIKADP-ADGFD-VGPILSIATRQLSSEWEATRIEA 299 (666)
Q Consensus 239 L~~LL~~Lsd~~~eIR~~A~~~n~~-----------------L~~~i~~~-~~~~d-l~~il~~L~~~L~~~~~~tR~aa 299 (666)
+..++..-..++ .+-+.-.+-... +..+.+.. -+... +.+.+.+....|.+++..+|..|
T Consensus 216 ~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 216 VLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHH
Confidence 222222211111 111111111111 11222211 11122 46788888899999999999999
Q ss_pred HHHHHHHHh
Q 005975 300 LHWISTLLN 308 (666)
Q Consensus 300 L~WL~~L~~ 308 (666)
+.....+..
T Consensus 295 ~~aW~~liy 303 (372)
T PF12231_consen 295 FKAWRRLIY 303 (372)
T ss_pred HHHHHHHHH
Confidence 974444433
No 367
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=34.58 E-value=4.4e+02 Score=25.55 Aligned_cols=79 Identities=16% Similarity=0.030 Sum_probs=61.1
Q ss_pred HHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH
Q 005975 240 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (666)
Q Consensus 240 ~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~ 319 (666)
+.+.+-+.++++-+|..|..+.-....- .-+.+.+++.+.....+++..+|.+.--+|..+..+.|+.+.+++.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5667777777787887776554332221 2457899999999999999999999999999999999999998887
Q ss_pred HHHHH
Q 005975 320 DIFDT 324 (666)
Q Consensus 320 ~l~p~ 324 (666)
..-..
T Consensus 182 ~~~~~ 186 (197)
T cd06561 182 KNGLS 186 (197)
T ss_pred HHHHh
Confidence 76543
No 368
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=34.00 E-value=88 Score=27.54 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 213 rl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
|..++--+..++...|-++=+|+|++|..|-....+ ...|+..+.++..++.+.=.
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 445667888899988888888999999998888875 66799999999988876643
No 369
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.99 E-value=2.6e+02 Score=32.45 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=29.1
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~ 322 (666)
.+++.+.|...+..++...-.+++..+.....+.+......+++.+
T Consensus 180 ~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 180 PPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3566666666554433333456777777777877777777776544
No 370
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=33.85 E-value=5.5e+02 Score=26.47 Aligned_cols=189 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred hcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC--------hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh--------
Q 005975 246 ISDKEEKIRVVARETNEELRAIKADPADGFD--------VGPILSIATRQLSSEWEATRIEALHWISTLLNR-------- 309 (666)
Q Consensus 246 Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d--------l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-------- 309 (666)
+.|+++.+.+.+-.+...+.+.+-+.-..-+ +..+-+.+...+.+.++.+|++|++++-.+...
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Q ss_pred ----------------------ChHHHhhhhHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhccchHHHHHHHHHhhc
Q 005975 310 ----------------------HRTEVLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNF 365 (666)
Q Consensus 310 ----------------------~p~~i~~~l~~l~p~LL~~LsD~s--~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf 365 (666)
.+..+..--.+++..|++.+.++. +.++..++..|+-|...-+.|-..+..-+.-|
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q ss_pred cccc--------hhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCCh-HHHHHHHHHHHHHhccchhHHHHHHHHHhc
Q 005975 366 RVDN--------SLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADL-DFACTMVQALNLILLTSSELSELRDLLKKS 436 (666)
Q Consensus 366 ~~d~--------~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl-~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~ 436 (666)
..+. .-++.| .-|+.+|.+---+.+..-. +|...+.+.|+-+=-+..|..+.-.+ ...
T Consensus 162 ~~~~~~~~~~~~~~~~v~------------sv~k~lk~~l~~llk~~~~~~~~~~i~~~L~~lg~~~~e~~~~~~~-~k~ 228 (239)
T PF11935_consen 162 NPNLSPMQPPTLSKLQVK------------SVEKTLKIFLLHLLKHPASSPFQGRITQALTDLGASQREIADEAKR-EKR 228 (239)
T ss_dssp HHS------TTCSHHHHH------------HHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTT--HHHHHHT-----GG
T ss_pred CccccccCCccchHHHHH------------HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHccCHHHHHHHhhh-hhc
Q ss_pred cCCcchHHHHH
Q 005975 437 LVNPAGKDLFV 447 (666)
Q Consensus 437 l~~~~~~~lF~ 447 (666)
-..++..+-|+
T Consensus 229 ~~~~~~~~~~~ 239 (239)
T PF11935_consen 229 KLPKRKKRGFE 239 (239)
T ss_dssp GGTT-------
T ss_pred cccCChhcccC
No 371
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.84 E-value=2.2e+02 Score=25.23 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=47.2
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv---~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlK 101 (666)
.|...++..++.|--|.+..-|.+.+..+..+.+. .+..+..-|..+++.+-.+.-|......+-|..+++++.
T Consensus 32 ~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~ 108 (113)
T smart00544 32 EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLIS 108 (113)
T ss_pred cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHH
Confidence 47778888888888888777888887777777643 122333445555555555555554455666666666644
No 372
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.66 E-value=70 Score=40.15 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 126 ~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
+|.+||..||.||. ++++.+++.|||.|++.|-
T Consensus 902 PDqeVR~~AVqwi~---~ls~DeL~d~LPQlVQALK 934 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIA---RLSNDELLDYLPQLVQALK 934 (1639)
T ss_pred CcHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHH
Confidence 78899999999987 5778999999999999984
No 373
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.52 E-value=1e+03 Score=29.55 Aligned_cols=295 Identities=14% Similarity=0.139 Sum_probs=161.1
Q ss_pred CCHHHHHHH-HHHHHHHHHhcCcccccchHhHHHHHhhhhcCC--cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHH
Q 005975 208 PDEFTRLTA-ITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIA 284 (666)
Q Consensus 208 ~d~~irl~A-l~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~--~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L 284 (666)
|+...|.++ +.=+..+..-.+....+++|+++...-. ...+ ++..-..+....+.+..-.++.+.. +...++.|
T Consensus 478 p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~as-ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~--ln~sl~~L 554 (982)
T KOG2022|consen 478 PDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSAS-IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMY--LNPSLPLL 554 (982)
T ss_pred chHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccc-cccccCChhHHHHHHHHHHHHHHHHhcCCcc--cCchHHHH
Confidence 344566664 4444445555566667778887765543 2333 7777788888888877777664443 45778888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHh------hccchHHH
Q 005975 285 TRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIA------KDLQHFRQ 356 (666)
Q Consensus 285 ~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD--~s~eVv~~~l~lLa~Is------~~~~~F~~ 356 (666)
.+.+..+.. -+.+..=+..+.+-|+.++.||.+++..+.-..+.- -.+.++.+.+..++.+- +-.+|..+
T Consensus 555 ~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 555 FQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 888864332 223333389999999999999999988777666543 23444444444433333 23567777
Q ss_pred HHHHHHhhcccc----chhhhhHHHHHHHHHhccCChHHHHHHHHHhhccc-----CC--------------hHHHHHHH
Q 005975 357 LVVFLVHNFRVD----NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE-----AD--------------LDFACTMV 413 (666)
Q Consensus 357 fm~~LL~lf~~d----~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~-----~d--------------l~F~~~mV 413 (666)
++.-++.-+... -+.-+.+ ++.|-.++. ..+|+..|..+ .| +.|.++.+
T Consensus 633 lin~il~qle~~l~~~i~~~e~~-----l~~~~~l~~---iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i 704 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENH-----LRIAFQLNT---ISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAI 704 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHH-----HHHHHHHHH---HHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHH
Confidence 666666555322 2222222 222333332 44455555432 11 23444444
Q ss_pred HHHHHHhccchhHH--------HHHHHHHhccC---CcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhc
Q 005975 414 QALNLILLTSSELS--------ELRDLLKKSLV---NPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVE 482 (666)
Q Consensus 414 q~Ln~iLLTs~El~--------~lR~~L~~~l~---~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~~~ 482 (666)
+++..++=-.-+.. -+-+.+++.++ .+--.+++.=+-+ |-+....+.|.+..+|-|+........+
T Consensus 705 ~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r---~~~~~~a~tl~l~~~~l~~~~~~~~~~~ 781 (982)
T KOG2022|consen 705 PVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR---FLTSCLAVTLSLIAACLLAKSTVEQCKP 781 (982)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH---hccchHHHHHHHHHHHHHhhhccccccc
Confidence 44433331111111 11112222000 0111222222223 7788888899999988877655433322
Q ss_pred cccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHh
Q 005975 483 EDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLL 529 (666)
Q Consensus 483 ~e~~~~~l~q~d~LvqllEspif~~lRl~Lle~~~~p~L~k~Lygll 529 (666)
. +-.++.-=+-+-+-++|+..|. ++|.++..+||.+
T Consensus 782 l-v~~~~~~~~q~sl~lf~~~~f~----------n~~Di~~~~~~~v 817 (982)
T KOG2022|consen 782 L-VGQDMANAFQQSLLLFEQHPFS----------NQPDIYLQLIGFV 817 (982)
T ss_pred c-HHHHHHHHHHHHHHHHhccCCC----------CCchHHHHHHHHH
Confidence 1 2233333444666677776654 4888888888854
No 374
>PF14961 BROMI: Broad-minded protein
Probab=32.09 E-value=1.2e+03 Score=30.00 Aligned_cols=66 Identities=29% Similarity=0.332 Sum_probs=52.1
Q ss_pred HhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChHHHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 278 GPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 278 ~~il~~L~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~i~--~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
++=++.+.++++.. ..++|.+|++- |+...|.++. +..+.+...|..+|+|+++++...+++..++
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~---Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak 228 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQI---LCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAK 228 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH---HhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45557888888744 46789988765 4566677775 5788999999999999999999999987666
No 375
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=32.05 E-value=5.7e+02 Score=26.15 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=96.6
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH
Q 005975 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (666)
Q Consensus 163 lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~L 242 (666)
.-.++++++....-++|..+.. . .....+.++..+......+..+.+..++.-+..+.+..+..+ ||+.+++...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~---~-~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~ 83 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLAC---H-KNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLL 83 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhc---c-CccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHH
Confidence 5566777777776666666653 1 114566777777777777777665555555555555544443 5555554431
Q ss_pred -hhh---hcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChHHHhhh
Q 005975 243 -LPC---ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHF 317 (666)
Q Consensus 243 -L~~---Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~i~~~ 317 (666)
+.. ..+.+.+.+..-..+ ......+...++ .-.++++.+..-+ ++.++..+-.|++.+..+. +.++.++
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a-~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc---~~~vvd~ 157 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIA-ASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC---EAEVVDF 157 (234)
T ss_pred HhhcccccCCCcchHHHHHHHH-HHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH---HHhhccH
Confidence 111 111222222111111 233344433222 3357788888888 7777888888888888887 4444443
Q ss_pred hHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005975 318 LNDIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 318 l~~l~p~LL~~Ls-D~s~eVv~~~l~lLa~Is 348 (666)
.. ....+.+-|+ |..|.|.+.-+.+.+-+.
T Consensus 158 ~s-~w~vl~~~l~~~~rp~v~~~l~~l~~l~~ 188 (234)
T PF12530_consen 158 YS-AWKVLQKKLSLDYRPLVLKSLCSLFALVP 188 (234)
T ss_pred HH-HHHHHHHhcCCccchHHHHHHHHHHHHhc
Confidence 32 2344444454 445777776666666655
No 376
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.75 E-value=5.1e+02 Score=28.69 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 127 NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 127 np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
...+...+|..|+++..-....--..+..=.+.|.++.--.+++++.+|..+|.++-
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 457788899999998876666556677777888898998899999999988887764
No 377
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.63 E-value=3.9e+02 Score=24.11 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccC
Q 005975 316 HFLNDIFDTLLKALS-DPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (666)
Q Consensus 316 ~~l~~l~p~LL~~Ls-D~s~eVv~~~l~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L 387 (666)
.++..++|++.+.|. ...+|.+--+.-+++.++. +++-++.+|+.+++....... ...+=..+-++|..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 467889999999999 7788999989989999985 355666677666665544432 122333444666555
No 378
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=31.54 E-value=3.4e+02 Score=26.02 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcc--cccccHhhhHHHHH
Q 005975 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE--SDQFSIEEFIPLLR 120 (666)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e--~~~f~L~~fIPlL~ 120 (666)
...+.+|-.|.-.+..+-+..+......+.+.+..+..-. +.|. ...+...+..+.- ++.+ +.-|.-+.|++.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~-~~d~-~i~~~~~l~~lfp-~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG-EMDS-LIIAFSALTALFP-GPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HCCH-HHHHHHHHHHHCT-TTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc-cchh-HHHHHHHHHHHhC-CCHHHHHHHHhhhhHHHHHH
Confidence 3567789988777766655555555455555555554211 1222 2223344444322 1111 12355567788888
Q ss_pred Hhhc--CCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcC-CCChh-HHHHHHHHH
Q 005975 121 ERMN--VLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLS-DSSHE-IRQQADSAL 179 (666)
Q Consensus 121 eri~--~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLs-D~~~e-VR~~A~~~L 179 (666)
+.+. ..+..+...+++.+.. ...+.+--. ....+++-|-+... +++.. ||..|.-+|
T Consensus 93 ~~~~~~~~~~~~~~~~lell~a--Ac~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSA--ACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHH--HTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 8887 6777777777777763 233333222 23333444445553 33333 676654433
No 379
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=30.56 E-value=5.7e+02 Score=25.70 Aligned_cols=143 Identities=13% Similarity=0.202 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCC--
Q 005975 214 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-- 291 (666)
Q Consensus 214 l~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~-- 291 (666)
..++.-+..+.+..+..-.|++..++..+-..-.+++.+.|+.+.++.+..++.++ .+.+++++--.+..+
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG-------pe~vL~~lPLnl~~~~~ 90 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG-------PEQVLSILPLNLDNADD 90 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC-------HHHHHHHCCCCccCCCc
Confidence 34455566666666666778888888888888888888899999999888877765 256666655545421
Q ss_pred cHHHHHHHHHHHHHHHhhC--hHHHhhhhHHHHHHHHHhcC-------CCCHHHHHHHH-----HHHHH---Hhh----c
Q 005975 292 WEATRIEALHWISTLLNRH--RTEVLHFLNDIFDTLLKALS-------DPSDEVVLLVL-----EVHAC---IAK----D 350 (666)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~~--p~~i~~~l~~l~p~LL~~Ls-------D~s~eVv~~~l-----~lLa~---Is~----~ 350 (666)
....| -|+.=+.+.+ ..++.=|.+.++|.. +.+. .....+-.+.+ ++|+. +|. -
T Consensus 91 ~~~~r----aWLLPlLr~~i~~~~L~fF~~~~lPla-~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~ 165 (198)
T PF08161_consen 91 SQPGR----AWLLPLLRDHIRNASLSFFVEEFLPLA-RRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDL 165 (198)
T ss_pred CCccc----chhHHHHHHhccCCChHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccH
Confidence 11122 2777666653 233333444444422 2222 12222222222 33333 342 1
Q ss_pred cchHHHHHHHHHhhcccc
Q 005975 351 LQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 351 ~~~F~~fm~~LL~lf~~d 368 (666)
.+.|+.|...|.+.+.++
T Consensus 166 ~~~F~~~a~~L~~~L~~~ 183 (198)
T PF08161_consen 166 AESFPSFAKLLGNALYDQ 183 (198)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 356777777777766654
No 380
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=1e+03 Score=28.53 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=38.5
Q ss_pred cccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhh
Q 005975 231 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNR 309 (666)
Q Consensus 231 l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~-~~tR~aaL~WL~~L~~~ 309 (666)
...|..+++.+++..+.+....++..+..+...+ |.+++ ...-.++..|+..++..
T Consensus 318 HFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~l-----------------------f~~D~~g~~sl~~Vr~i~~llK~ 374 (704)
T KOG2153|consen 318 HFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTL-----------------------FENDNGGSGSLAIVRIINSLLKT 374 (704)
T ss_pred hccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-----------------------hcCCCccchhHHHHHHHHHHhhh
Confidence 4567899999999999998777776666554433 32222 34556677788777765
Q ss_pred C
Q 005975 310 H 310 (666)
Q Consensus 310 ~ 310 (666)
.
T Consensus 375 r 375 (704)
T KOG2153|consen 375 R 375 (704)
T ss_pred h
Confidence 3
No 381
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=30.25 E-value=5.6e+02 Score=25.46 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH-hhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 297 IEALHWISTLL-NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 297 ~aaL~WL~~L~-~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
+.|..-+..|. ..+.+-+.++++.++|.+.+.|.+|.+ ....+|+||-
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LAl 108 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLAL 108 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHHH
Confidence 45565566665 557778899999999999999999875 4445666554
No 382
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=29.38 E-value=4.4e+02 Score=26.88 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCCHHHHHHH---HHHHHHHhhccchHHHHHHHHHhhcc------ccchhhhhHHHHHHHHHhccCCh-H
Q 005975 321 IFDTLLKALSDPSDEVVLLV---LEVHACIAKDLQHFRQLVVFLVHNFR------VDNSLLEKRGALIIRRLCVLLDA-E 390 (666)
Q Consensus 321 l~p~LL~~LsD~s~eVv~~~---l~lLa~Is~~~~~F~~fm~~LL~lf~------~d~~lLe~Rg~~IIR~Lc~~L~~-E 390 (666)
+...|+..|...+..+..++ ..+|..+-..+..|+.+|.--.+.=+ .-+..+|.| .-.|.||.+.|.. |
T Consensus 23 i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkr-D~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 23 IVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKR-DEVIQQLQKNLKSAE 101 (272)
T ss_pred HHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 34445555544444444433 24555555667777776654443221 113444555 4567777777643 2
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhc----cCCcchHHHHHHHHHhhccChHHH
Q 005975 391 RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKS----LVNPAGKDLFVSLYASWCHSPMAI 460 (666)
Q Consensus 391 ~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~----l~~~~~~~lF~~L~~~w~~n~vs~ 460 (666)
.|.. .-.+.-|.+|+.. +..-.+.+|..---+.=.||+|+|
T Consensus 102 ~iLt-----------------------------ta~fqA~qKLksi~~A~krpvsSEelIKyAHrIS~~NaVsA 146 (272)
T KOG4552|consen 102 VILT-----------------------------TACFQANQKLKSIKEAEKRPVSSEELIKYAHRISKHNAVSA 146 (272)
T ss_pred HHHH-----------------------------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcccccC
Confidence 2211 1233345566531 122234556665666677898876
No 383
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=28.61 E-value=5.9e+02 Score=27.54 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=35.3
Q ss_pred HhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhHH--HHHHHHHhc
Q 005975 278 GPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLND--IFDTLLKAL 329 (666)
Q Consensus 278 ~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~--l~p~LL~~L 329 (666)
+.+...|...+. +.+..+++.-|.-|+.-.-.||..+..|++. .++.|+...
T Consensus 154 q~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 154 QTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHh
Confidence 344444444444 5678889999999999999999999999875 778887753
No 384
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.60 E-value=3.1e+02 Score=33.11 Aligned_cols=28 Identities=14% Similarity=-0.006 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhcc
Q 005975 339 LVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 339 ~~l~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (666)
.++.++..+......|..|+..|+.++.
T Consensus 263 ~al~~l~~L~~~G~d~~~~l~~L~~~l~ 290 (709)
T PRK08691 263 ALLAKAQEMAACAVGFDNALGELAILLQ 290 (709)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445555555555667777777766654
No 385
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=28.28 E-value=5.2e+02 Score=26.36 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh-----hccc-ccccHhhhHHHHHHhhc--CCCHHHHHHHHHHHHHh
Q 005975 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-----VTES-DQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITVL 141 (666)
Q Consensus 70 ~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDI-----v~e~-~~f~L~~fIPlL~eri~--~~np~vR~~alswL~~L 141 (666)
.-..||++||+.+.-.....|+-|+.+-..+++. ..-. +.-..+.-+--..+++. ...-+-|.|+|+..+.|
T Consensus 70 ~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LL 149 (206)
T PLN03060 70 DRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLL 149 (206)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Confidence 4578999999988655566777775554444421 1110 00012222233334442 23458899999999887
Q ss_pred hcCCchhhhhchHHHHHHHHHhcCCCChhH
Q 005975 142 DSVPDIDMLGFLPDFLDGLFNMLSDSSHEI 171 (666)
Q Consensus 142 ~svp~~~Li~yLp~fL~gLf~lLsD~~~eV 171 (666)
....+. =|+.+..|+.-|+=+...|
T Consensus 150 e~a~~~-----d~~~l~~l~~~L~ls~~kv 174 (206)
T PLN03060 150 ECAKAS-----DPAVLEKLSKALNVSKRSV 174 (206)
T ss_pred HHcCCC-----CHHHHHHHHHHcCCCHHHH
Confidence 766543 2346666665555544433
No 386
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.93 E-value=7.2e+02 Score=26.04 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHhcCCCChh--HHHHHHHHHHHHHH
Q 005975 159 GLFNMLSDSSHE--IRQQADSALWEFLQ 184 (666)
Q Consensus 159 gLf~lLsD~~~e--VR~~A~~~L~~fL~ 184 (666)
.|++++.|++-+ ||.+|.++|..+..
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 345677777654 88888888877764
No 387
>PRK13266 Thf1-like protein; Reviewed
Probab=27.87 E-value=4.2e+02 Score=27.41 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH-----hhc---ccccccHhhhHHHHHHhhc-CCCHHHHHHHHHHHHH
Q 005975 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKD-----IVT---ESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITV 140 (666)
Q Consensus 70 ~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKD-----Iv~---e~~~f~L~~fIPlL~eri~-~~np~vR~~alswL~~ 140 (666)
.-..||++||+.+.-.....|+-|..+-..+++ |+. ..+.-..+.+.-.+..... ...-+-|.|+|+..+.
T Consensus 72 ~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AIGL~~L 151 (225)
T PRK13266 72 HKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLLAIANNSKFKYSRLFAIGLYTL 151 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 457899999998865555677777555444432 221 1111222223333333322 2335889999998887
Q ss_pred hhcCCchhh--hhchHHHHHHHHHhcCCCChhH
Q 005975 141 LDSVPDIDM--LGFLPDFLDGLFNMLSDSSHEI 171 (666)
Q Consensus 141 L~svp~~~L--i~yLp~fL~gLf~lLsD~~~eV 171 (666)
|....+... -..++..+..|+.-|+=+...|
T Consensus 152 Le~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv 184 (225)
T PRK13266 152 LEEAQPDLVKDEEKLNEALKDISEGLGLSKEKV 184 (225)
T ss_pred HHhcCcccccCHHHHHHHHHHHHHHcCCCHHHH
Confidence 766554211 1244555555555555444333
No 388
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.68 E-value=2.9e+02 Score=26.31 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CC
Q 005975 68 IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS--VP 145 (666)
Q Consensus 68 l~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~s--vp 145 (666)
+..-+++.+.+..+++++|+.|+..| |++++. -... .+...-..|...+ .+...|--+..|...-.+ |.
T Consensus 12 l~~~~~l~~~~~~LL~~~d~~vQklA--L~cll~----~k~~-~l~pY~d~L~~Ll--dd~~frdeL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 12 LYRSDELYDALLRLLSSRDPEVQKLA--LDCLLT----WKDP-YLTPYKDNLENLL--DDKTFRDELTTFNLSDESSVIE 82 (141)
T ss_pred HhhHHHHHHHHHHHHcCCCHHHHHHH--HHHHHH----hCcH-HHHhHHHHHHHHc--CcchHHHHHHhhcccCCcCCCC
Confidence 34557888888999999999999988 444433 1111 1222233333333 345667766666643322 55
Q ss_pred chhhhhchHHHHHHHHHhc
Q 005975 146 DIDMLGFLPDFLDGLFNML 164 (666)
Q Consensus 146 ~~~Li~yLp~fL~gLf~lL 164 (666)
+.+--..+|-++.-|+.-+
T Consensus 83 ~ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 83 EEHRPELMPVVLRILYGKM 101 (141)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 5555666777777777444
No 389
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=27.46 E-value=1.8e+02 Score=26.57 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC--c-------HHHHHHHHH
Q 005975 192 VDYGRMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--E-------EKIRVVARE 259 (666)
Q Consensus 192 ~d~~~iI~iLl~~~---~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~--~-------~eIR~~A~~ 259 (666)
.++..|+.+|..++ ..++..+...|+.-|.-++.-+++.++..+-.-...|-.+..+. + ..||..|.+
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 56889999999999 55567788999999999999999988888876677666655432 1 258888887
Q ss_pred HHHHH
Q 005975 260 TNEEL 264 (666)
Q Consensus 260 ~n~~L 264 (666)
+..-+
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66443
No 390
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=27.38 E-value=1.1e+02 Score=26.85 Aligned_cols=43 Identities=28% Similarity=0.265 Sum_probs=30.2
Q ss_pred HhHHHHhhhhhhH--HHhhhhhHHHHHhhcCCCC-HHHHHHHHHHHHH
Q 005975 14 EQFLLYADLFFYS--ETILQQIVPPVLNSFSDQD-SRVRYYACEALYN 58 (666)
Q Consensus 14 ~~~~~~~~~~~~~--~~yl~~Il~pVL~~~~D~d-~rVR~~A~eaL~n 58 (666)
|++| |.+.+.. ...+.-+.|-++-...+++ +.+|+.|++++.-
T Consensus 2 er~~--a~l~~ls~~~~~~~~i~pli~~~~~k~~~~~vr~ha~qal~~ 47 (109)
T PF09685_consen 2 ERTW--AALAYLSFFSPFLGFIGPLIVWIVKKDKSPFVRFHAKQALNF 47 (109)
T ss_pred cHHH--HHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5555 4444433 5677777777777776666 8999999998754
No 391
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=27.02 E-value=9.5e+02 Score=27.10 Aligned_cols=253 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhcchh---------hhhH--------HHHHHHHHHhhcCCchhHHHHH-HHHHH
Q 005975 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDF---------IIFF--------NQIFDALCKLSADSDANVQSAA-HLLDR 98 (666)
Q Consensus 37 VL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i---------l~~f--------~eIfd~L~kl~~D~d~~Vr~gA-~~Ldr 98 (666)
+|.--+|+.+.|-.|-. |.|.+++.. ++.| .+-||+-+.++.|.|-.||..| ..|..
T Consensus 13 ~l~~a~dk~q~v~~y~~-----il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~ 87 (460)
T KOG2213|consen 13 ILSEATDKSQHVDDYEG-----ILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPL 87 (460)
T ss_pred HHHhhchhhhhHHHHHH-----HHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccch
Q ss_pred HHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHH
Q 005975 99 LVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADS 177 (666)
Q Consensus 99 LlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLsD~~~eVR~~A~~ 177 (666)
+||+ -.+....|.|.++++ ..-+.-+-.=..+.+..+.. .++.+-..++.+...--. +..=+-
T Consensus 88 fc~~-------d~~~rv~d~l~qLLn-------k~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~--kevE~~ 151 (460)
T KOG2213|consen 88 FCKG-------DALSRVNDVLVQLLN-------KASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLT--KEVERH 151 (460)
T ss_pred hccC-------chhhhhHHHHHHHHH-------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhh--hHHHHH
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHH
Q 005975 178 ALWEFLQEIKNSPSVDYGRMAEIL--VQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (666)
Q Consensus 178 ~L~~fL~eI~~~~~~d~~~iI~iL--l~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~ 255 (666)
.++..-+.+.....-.+.-++++| ++..+....+.|+.=+.-..+=..--.. |-+-=+..+.-+++|+.-..|-.-.
T Consensus 152 iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f~~sD~d~VdRfisCl~~AvPfFar 230 (460)
T KOG2213|consen 152 IVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-FNVSDADYVDRFISCLLMAVPFFAR 230 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-ccCCChHHHHHHHHHHHHhhhhhhc
Q ss_pred HHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc
Q 005975 256 VARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (666)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L 329 (666)
.|-. ...+..+.++.- +-+..+-..-|+.|..|++..+..-.+-..+++|.++..|
T Consensus 231 gapS------------------skf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elL 288 (460)
T KOG2213|consen 231 GAPS------------------SKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELL 288 (460)
T ss_pred CCch------------------hHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
No 392
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=26.83 E-value=6.4e+02 Score=25.05 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=31.2
Q ss_pred hhhchHHHHHHHHHhcCCCCh-hHH--HHH-HHHHHHHHHHhhcCCCCC-HHHHHHHHHHhcC
Q 005975 149 MLGFLPDFLDGLFNMLSDSSH-EIR--QQA-DSALWEFLQEIKNSPSVD-YGRMAEILVQRAA 206 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~-eVR--~~A-~~~L~~fL~eI~~~~~~d-~~~iI~iLl~~~~ 206 (666)
+.+++..+++...+.|.+|.. +|. ..| ..+...+++-+.....+| +.++++.+++...
T Consensus 78 l~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~ 140 (174)
T PF04510_consen 78 LIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVK 140 (174)
T ss_pred HHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 567777788888888888742 333 222 223333444443333333 4566666665543
No 393
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=1.2e+03 Score=28.18 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHH
Q 005975 316 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRE 395 (666)
Q Consensus 316 ~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~ 395 (666)
+|+...+|.-+..|+=++|.|. .+.+|+++|. +...+--|..+..+=--..--...|-+-+.|||...
T Consensus 654 ~~iRravPLal~llsvSNPq~~--vlDtLsk~sh-d~D~eva~naIfamGLiGAGTnNARla~mLrqlaSY--------- 721 (878)
T KOG2005|consen 654 PHIRRAVPLALGLLSVSNPQVN--VLDTLSKFSH-DGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASY--------- 721 (878)
T ss_pred HHHHHHHHHHHhhhccCCCcch--HHHHHHHhcc-CcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHH---------
Confidence 5677788888888888888764 5677888872 334444444444432211222244556667776543
Q ss_pred HHHhhcccCChHHHHHHHHHHH
Q 005975 396 LSTILEGEADLDFACTMVQALN 417 (666)
Q Consensus 396 la~iL~~~~dl~F~~~mVq~Ln 417 (666)
--++.+.=|+-++.|-|.
T Consensus 722 ----yyKd~~~Lf~vriAQGL~ 739 (878)
T KOG2005|consen 722 ----YYKDSKALFVVRIAQGLV 739 (878)
T ss_pred ----HhccchhHHHHHHHHHHH
Confidence 223455556656666553
No 394
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.28 E-value=4.2e+02 Score=33.09 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=23.1
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~ 320 (666)
+++...|...+..+....-..++..+..+..+.+......++.
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4555555554433332223346666677777766666655543
No 395
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=26.16 E-value=8e+02 Score=25.97 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 292 WEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
.|..|+++|.-++++.+....++..|+= +++|..|+.+.-.++.-...|.-++.+|-.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4778999999999999988888888765 699999999987666655567777777653
No 396
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=26.08 E-value=4.9e+02 Score=26.73 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH-----hhc---ccccccHhhhHHHHHHhhc--CCCHHHHHHHHHHHH
Q 005975 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKD-----IVT---ESDQFSIEEFIPLLRERMN--VLNPYVRQFLVGWIT 139 (666)
Q Consensus 70 ~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKD-----Iv~---e~~~f~L~~fIPlL~eri~--~~np~vR~~alswL~ 139 (666)
.-..||++||+.+.-.....|+-|+.+-..+++ +.. ..+.-..+.+ ....|. ..--+-|.|+|+..+
T Consensus 72 ~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l---~l~~ia~n~~f~YSRl~AIGL~~ 148 (214)
T TIGR03060 72 HLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLSNGGGD---TLQGIAGRHKFKYSRLFAIGLYS 148 (214)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccCCcchh---HHHHHhcCCCcchHHHHHHHHHH
Confidence 457899999998865556677777555444442 211 1111111111 233332 223478999999888
Q ss_pred HhhcCCchhhh--hchHHHHHHHHHhcCCCChhH
Q 005975 140 VLDSVPDIDML--GFLPDFLDGLFNMLSDSSHEI 171 (666)
Q Consensus 140 ~L~svp~~~Li--~yLp~fL~gLf~lLsD~~~eV 171 (666)
.|....+.... .-.+..+..|+.-|+=+...|
T Consensus 149 LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv 182 (214)
T TIGR03060 149 LLEEAAPDKDIDEEDLNEILKELSEALGLSYDRV 182 (214)
T ss_pred HHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHH
Confidence 77655443211 125566666666555554433
No 397
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=26.00 E-value=1.3e+02 Score=26.67 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=39.7
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc---hHHHHHHHHHhcCCCChhHHHH
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF---LPDFLDGLFNMLSDSSHEIRQQ 174 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y---Lp~fL~gLf~lLsD~~~eVR~~ 174 (666)
..+..++-.+.+++...++.--.+.+-|+..+...-+..+... +-..+..|.+.+.....+.++.
T Consensus 28 ~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l 95 (110)
T PF04003_consen 28 SYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKL 95 (110)
T ss_pred HHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777775566666778999998888777666555 3333444444444333333333
No 398
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=25.81 E-value=2.1e+02 Score=25.63 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005975 153 LPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (666)
Q Consensus 153 Lp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l 231 (666)
+-.||..|.++.+| .++||...+..++..++. ..++.+++...|-..++++ +...+
T Consensus 6 ck~FL~tLi~las~~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~------------------pqP~l 62 (96)
T PF07531_consen 6 CKNFLNTLIQLASDKQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSS------------------PQPYL 62 (96)
T ss_dssp HHHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--------------------TTH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCC------------------CCcch
Confidence 34678888889999 788888877665555553 2344455555544444432 23456
Q ss_pred ccchHhHHHHHhhhhcCC
Q 005975 232 VPYYADILGAILPCISDK 249 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~ 249 (666)
+||+-+-||++-..+.+.
T Consensus 63 vPFLK~~lp~Lr~~l~~~ 80 (96)
T PF07531_consen 63 VPFLKKSLPALRQELPNC 80 (96)
T ss_dssp HHHHHHHHHHHHHCHCHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 788888888877766553
No 399
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=9.7e+02 Score=30.45 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=74.1
Q ss_pred hHHHHHhhcCCCC-HHHHHHHHHHHHHH-HHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccc
Q 005975 33 IVPPVLNSFSDQD-SRVRYYACEALYNI-AKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQF 110 (666)
Q Consensus 33 Il~pVL~~~~D~d-~rVR~~A~eaL~nI-~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f 110 (666)
++.-++.+-.|.+ .+-+.+....+-.| +.+++++--..|++.++.+...+.-+++...+.-..+.+|.+|...-++..
T Consensus 92 v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~ 171 (1041)
T KOG2020|consen 92 VLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSE 171 (1041)
T ss_pred HHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccchH
Confidence 4444444444443 33444455555443 555666555566676666666666555444444467888888877644322
Q ss_pred cHhhhHHHHHHhhc------------CC-CHHHHHHHHHHHHHhh----cCCchhhhhchHHHHHHHHHhcCCCChhHHH
Q 005975 111 SIEEFIPLLRERMN------------VL-NPYVRQFLVGWITVLD----SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 111 ~L~~fIPlL~eri~------------~~-np~vR~~alswL~~L~----svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
....=.+.+...+. +. +...+ .+..|+..+. .+|-.-+. -- ..+++++..+ -+.++.|.
T Consensus 172 ~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~-~~~atl~tl~~fl~wip~~~I~-~t-n~l~~~l~~~-ln~~~~r~ 247 (1041)
T KOG2020|consen 172 LTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE-LLSATLETLLRFLEWIPLGYIF-ET-NILELLLNKF-LNAPELRN 247 (1041)
T ss_pred HHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhcccHHHHH-Hh-hhHHHHHHhc-cchHHHHH
Confidence 22222333333222 11 11222 4445555432 23322111 11 1144433222 13478999
Q ss_pred HHHHHHHHHHHH
Q 005975 174 QADSALWEFLQE 185 (666)
Q Consensus 174 ~A~~~L~~fL~e 185 (666)
.|.+||.++...
T Consensus 248 ~al~CL~ei~s~ 259 (1041)
T KOG2020|consen 248 NALSCLTELLSR 259 (1041)
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 400
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.79 E-value=5.7e+02 Score=28.72 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchH------HHHHHHHHhhcc-ccchhhhhHHHHHHHHH
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAKD-LQHF------RQLVVFLVHNFR-VDNSLLEKRGALIIRRL 383 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-~~~F------~~fm~~LL~lf~-~d~~lLe~Rg~~IIR~L 383 (666)
+-+..|.+.|...++.|+..++.++..+++| .+-| +.|...|..++. +-..-+.+|....+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eW 116 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEW 116 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 4556777888888888888888877777753 2233 235555555554 33333344444444433
No 401
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=25.11 E-value=1e+03 Score=26.93 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc-ccchHhHHHHHhhhh
Q 005975 169 HEIRQQADSALWEFLQEIKNSPSVDYGRMAE-ILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADILGAILPCI 246 (666)
Q Consensus 169 ~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~-iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l-~pylp~lL~~LL~~L 246 (666)
-..|-.|.++|+.++.-+. .-....+.. .|+.++.++...-|+.|.--+.++....+..- .+..+.+.+.+..+|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~---~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWP---ESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 4567889999999998873 355666665 68889999888888888777777666543221 111456666777777
Q ss_pred cCC
Q 005975 247 SDK 249 (666)
Q Consensus 247 sd~ 249 (666)
..+
T Consensus 178 ~~~ 180 (441)
T PF12054_consen 178 ENP 180 (441)
T ss_pred cCC
Confidence 743
No 402
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=24.85 E-value=1.4e+03 Score=28.41 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-
Q 005975 170 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS- 247 (666)
Q Consensus 170 eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~-~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls- 247 (666)
.+|.++.+.++++.-.- .++-.-.++++-.+++...++.. +.+...+.-|..++...++...|-.+.+++.+-....
T Consensus 508 T~~~a~~t~~~~~n~~~-~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~ 586 (947)
T COG5657 508 TTREAYSTIFDDWNFSV-CSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEI 586 (947)
T ss_pred HHHHHHHHHHHhccccc-ccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHH
Confidence 35555555444443211 12223468888888998888764 5677889999999999999999988888877665433
Q ss_pred -CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHH
Q 005975 248 -DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (666)
Q Consensus 248 -d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~L 325 (666)
-.+|..+..+...-+.....+...... .+..++.+..-+.-+ ....-+.+......+...-..-...+....+|.+
T Consensus 587 ~~knps~p~~~h~~fe~I~al~~~~~~~--~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v 664 (947)
T COG5657 587 NAKNPSNPQFAHYTFEDIGALVFLKSGM--CEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSV 664 (947)
T ss_pred HccCCccHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchH
Confidence 345555554444433333222211110 123344444444322 1222334444333333332222222223335555
Q ss_pred HHhcCCC--CHHHHHHHHHHHHHHh
Q 005975 326 LKALSDP--SDEVVLLVLEVHACIA 348 (666)
Q Consensus 326 L~~LsD~--s~eVv~~~l~lLa~Is 348 (666)
++-+..+ ++++-......++-+.
T Consensus 665 ~~~l~q~~~~t~ll~~~~~I~~~~~ 689 (947)
T COG5657 665 VKILRQPSLATELLPTKLEILKSYR 689 (947)
T ss_pred HHHHhcccCchHHHHHHHHHHHHHH
Confidence 5555543 2444444444444433
No 403
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.78 E-value=3.4e+02 Score=32.28 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=22.2
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI 321 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l 321 (666)
+++...|...+..++...-..++..|....++.+......+++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ 229 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQA 229 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44455555444333322233455666666666666655555443
No 404
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=24.55 E-value=5.8e+02 Score=27.67 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=55.5
Q ss_pred hcCcccc-cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChH-hHHHHHHHhcCCCcHHH--HHHHH-
Q 005975 226 LGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG-PILSIATRQLSSEWEAT--RIEAL- 300 (666)
Q Consensus 226 l~~~~l~-pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~-~il~~L~~~L~~~~~~t--R~aaL- 300 (666)
.+|+++. .-+|-++.+|=-+++...+.|-..-..++..|...- +-+ .|+ ++++.+++-+....... -+..+
T Consensus 215 qGPedla~d~vP~~lGGiGm~~GfT~ekigr~l~sa~~~Lra~~-~lG---~ygiei~~~i~kw~fp~~~~~~~~l~~iE 290 (358)
T PF08405_consen 215 QGPEDLAKDLVPVLLGGIGMALGFTSEKIGRMLSSAASGLRAAT-ELG---QYGIEIFKLIMKWFFPKKDPEPATLRNIE 290 (358)
T ss_pred cCcchHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 4566654 446666666666667777776666666665553221 100 132 67777777775333222 11111
Q ss_pred HHHHHHHhhChHHHhhhhH--HHHHHHHHhcCCCCHHHHHHHH
Q 005975 301 HWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVL 341 (666)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s~eVv~~~l 341 (666)
+..+.+--...+.+...+. +-..+.+++|..+.+++|+.+.
T Consensus 291 ~AVid~E~~~~n~~T~llrdk~s~~~f~k~LD~EEekaRkls~ 333 (358)
T PF08405_consen 291 DAVIDMEALSNNHLTALLRDKNSGAAFMKTLDMEEEKARKLST 333 (358)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHhhhHHHHHHHHhh
Confidence 1222111111122222221 2335566888887777777654
No 405
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=24.20 E-value=1.2e+03 Score=27.33 Aligned_cols=231 Identities=15% Similarity=0.185 Sum_probs=124.6
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHH---HHHHh-hcCCchhhhhchHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHH
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVG---WITVL-DSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQE 185 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~als---wL~~L-~svp~~~Li~yLp~fL~gLf~lLsD~--~~eVR~~A~~~L~~fL~e 185 (666)
-+.|+--|.++..+.+ ..+.-+.. -++.+ .++.+.+-.+-==+|+..+-++..++ +.+||.+-|+.|..++.=
T Consensus 83 sdRF~~eL~~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlP 161 (552)
T PF14222_consen 83 SDRFIAELEKLRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLP 161 (552)
T ss_pred HHHHHHHHHHhcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 4677777777775322 55544433 34433 45666666666678888888888887 567999999999999987
Q ss_pred hhcCC--C---CCHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHhcC-cccccchH-hHHHHHhhhhcCCcHHHH
Q 005975 186 IKNSP--S---VDYGRMAEILVQRA----ASPDEFTRLTAITWINEFVKLGG-DQLVPYYA-DILGAILPCISDKEEKIR 254 (666)
Q Consensus 186 I~~~~--~---~d~~~iI~iLl~~~----~s~d~~irl~Al~WL~~~i~l~~-~~l~pylp-~lL~~LL~~Lsd~~~eIR 254 (666)
+.... + ..+.+.|+.|...+ ..+. .-..+.--+..++.+++ +-|..... .++..+.+.+.|. +.|
T Consensus 162 vA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~k--hw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r 237 (552)
T PF14222_consen 162 VAATATAEVNHPKWKEAVETIYPRAAKMMSKPK--HWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETR 237 (552)
T ss_pred HhhcccccccccHHHHHHHHHHHHHHHHHhCcc--hhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhh
Confidence 75533 2 23555555554432 2211 11112222333344444 44555555 6888888777776 788
Q ss_pred HHHHHHHHHHHHhhC--CCCCCCC-----hHhHHHHHHHhcCCCcHHHHH-HHHHHHHHHHhhChHHHhhhh-HHHHHHH
Q 005975 255 VVARETNEELRAIKA--DPADGFD-----VGPILSIATRQLSSEWEATRI-EALHWISTLLNRHRTEVLHFL-NDIFDTL 325 (666)
Q Consensus 255 ~~A~~~n~~L~~~i~--~~~~~~d-----l~~il~~L~~~L~~~~~~tR~-aaL~WL~~L~~~~p~~i~~~l-~~l~p~L 325 (666)
.+|..+...|+-..- ...+..+ ++.+++.+... ...++.++. .-++-+..+...-+..-.+|. ++++-.|
T Consensus 238 ~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~-~kk~~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~L 316 (552)
T PF14222_consen 238 PVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPK-GKKGWIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPL 316 (552)
T ss_pred HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccC-CCCcccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHH
Confidence 888888776643321 1112111 34444433311 123455555 555555544444433333443 4444444
Q ss_pred HHhcCC------CCHHHHHHHHHHHHHHh
Q 005975 326 LKALSD------PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 326 L~~LsD------~s~eVv~~~l~lLa~Is 348 (666)
|+.=.. -+||-.-.+++..-.|.
T Consensus 317 L~~~~~~s~~~~l~pERm~IgIRA~l~Il 345 (552)
T PF14222_consen 317 LNVSFNGSSLENLNPERMIIGIRAFLAIL 345 (552)
T ss_pred HccccccccccccChhHHHHHHHHHHHHH
Confidence 443222 23565555555444443
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.77 E-value=2.1e+03 Score=30.06 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC---CchhHHHHH-HHHHHHHHHhhc-ccccccHhh-hHHHHH
Q 005975 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD---SDANVQSAA-HLLDRLVKDIVT-ESDQFSIEE-FIPLLR 120 (666)
Q Consensus 47 rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D---~d~~Vr~gA-~~LdrLlKDIv~-e~~~f~L~~-fIPlL~ 120 (666)
..++-.-.+++.|.+..+..+..++...++.+..++.- ....++..| .+...++.-.-. +.+.. ++. +++.+.
T Consensus 892 ~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~~~~~~-~~~~i~~~l~ 970 (2382)
T KOG0890|consen 892 TIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDNEKSDI-LDRNIIAALF 970 (2382)
T ss_pred hHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhhcch-hhhHHHHHHH
Confidence 35555566788887766544433333334444333322 233445554 333222221111 11111 222 555555
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005975 121 ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEI 200 (666)
Q Consensus 121 eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~i 200 (666)
..+.......+.....||..-+...=..+..++| ++.|..+-.+..+.. ...+.... .-++....+.
T Consensus 971 p~l~~~~~~~v~~i~~~i~~~~~d~i~~~~~~~~--------~l~~~p~~~~~~~~~---~~~r~~~~--~~~l~~~l~~ 1037 (2382)
T KOG0890|consen 971 PLLEHIELNLVSSILDFISLDNRDNIQILKSDIP--------ILPSIPELGNLKAAI---QEARGLLS--EDDLDDQLRD 1037 (2382)
T ss_pred HHhccccHHHHHHHHHHHHHhhHHHHHhhhcccc--------ccCCchHHHHHHHHH---HHHHhhcc--ccchhhhhHH
Confidence 5554556666676777776322111112233333 233333322222211 11111111 1156777777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHh--------cCccc--ccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Q 005975 201 LVQRAASPDEFTRLTAITWINEFVKL--------GGDQL--VPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (666)
Q Consensus 201 Ll~~~~s~d~~irl~Al~WL~~~i~l--------~~~~l--~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (666)
...+..+.+..+|..++.=+..++.- ....+ .+-+..++..++.+-....-+++..++++.+++-
T Consensus 1038 ~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lg 1112 (2382)
T KOG0890|consen 1038 FMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCAKCLGELG 1112 (2382)
T ss_pred HHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777777777666655554441 11112 2456778888888777666788888888888764
No 407
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.67 E-value=1.5e+02 Score=27.15 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=28.9
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAK 61 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~K 61 (666)
.+-.-.++-+++.+.|+++.|+..|.+.|++.+.
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4455677888999999999999999999999864
No 408
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=23.13 E-value=1.4e+03 Score=27.74 Aligned_cols=323 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------hhhhhHHHHHHHHHHhhcCCchhHH
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-----------------------DFIIFFNQIFDALCKLSADSDANVQ 90 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-----------------------~il~~f~eIfd~L~kl~~D~d~~Vr 90 (666)
+|.++.-|..+..+|+..||-+|.|++-.-.+ ....--..|-..|++|.+. |.--.
T Consensus 277 I~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~ 355 (717)
T KOG1048|consen 277 IPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKM 355 (717)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHH
Q ss_pred HHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh---------hhhchHHHHHHH
Q 005975 91 SAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID---------MLGFLPDFLDGL 160 (666)
Q Consensus 91 ~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~---------Li~yLp~fL~gL 160 (666)
..+ .+|..|-..++..-.-+.=+.+. ....++.+=+.+.++|.++.+..... ++.-|-.++...
T Consensus 356 ~ii~~al~tLt~~vI~P~Sgw~~~~~~------~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 356 LIITSALSTLTDNVIIPHSGWEEEPAP------RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCcc------cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-----------------------------HHHHHHHHHHhcCCCCHH
Q 005975 161 FNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----------------------------YGRMAEILVQRAASPDEF 211 (666)
Q Consensus 161 f~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d-----------------------------~~~iI~iLl~~~~s~d~~ 211 (666)
..--.=.++.|.+.+|- ++-+ +..++ |...-..+...+.+
T Consensus 430 i~~~~~d~K~VENcvCi-----lRNL--SYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~---- 498 (717)
T KOG1048|consen 430 IQKSDLDSKSVENCVCI-----LRNL--SYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDD---- 498 (717)
T ss_pred HHhccccchhHHHHHHH-----Hhhc--CchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccc----
Q ss_pred HHHHHHHHHHHHHHhcCccccc------chHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhCCCCCC-----CChHh
Q 005975 212 TRLTAITWINEFVKLGGDQLVP------YYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADG-----FDVGP 279 (666)
Q Consensus 212 irl~Al~WL~~~i~l~~~~l~p------ylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~-----~dl~~ 279 (666)
+.+++....| |-|.++..=+..|+ ..++.+-+.+..+.+.+...-.-.+.. +--+.
T Consensus 499 ------------~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kek 566 (717)
T KOG1048|consen 499 ------------LPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEK 566 (717)
T ss_pred ------------cCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhcc
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHhhccch
Q 005975 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD------EVVLLVLEVHACIAKDLQH 353 (666)
Q Consensus 280 il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~------eVv~~~l~lLa~Is~~~~~ 353 (666)
.++.+.+.+..++..+..++.-.|..+....-.+-.-- ...+|-|+.+|-+..+ +++..+|-+|..|..
T Consensus 567 gl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~---- 641 (717)
T KOG1048|consen 567 GLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR---- 641 (717)
T ss_pred CccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH----
Q ss_pred HHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005975 354 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (666)
Q Consensus 354 F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (666)
+-..+-+.+++.+|--=++-||+.-..++.++.=+-+|
T Consensus 642 ---------~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL 679 (717)
T KOG1048|consen 642 ---------KNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVL 679 (717)
T ss_pred ---------HhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHH
No 409
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=22.34 E-value=1.1e+03 Score=26.08 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=54.6
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC--
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-- 190 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~-- 190 (666)
-.|+..+...+.+..-+--..+|-|+-.+.+..-.++-.++..|.+-+--.=.|....|-+.|+..+...+..-++..
T Consensus 194 ~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~ 273 (432)
T COG5231 194 RRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIF 273 (432)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 456666666666554444556777877777655555555555555544333355556677777776666665111100
Q ss_pred ----CCCHHHHHHHHHHhcCCCC
Q 005975 191 ----SVDYGRMAEILVQRAASPD 209 (666)
Q Consensus 191 ----~~d~~~iI~iLl~~~~s~d 209 (666)
.-|..+-+..|.++-.+.+
T Consensus 274 ~~lll~~~~k~vq~L~erkysDE 296 (432)
T COG5231 274 SPLLLNDISKCVQVLLERKYSDE 296 (432)
T ss_pred hhHhhcchHHHHHHHHhcCCChH
Confidence 1145666677777666543
No 410
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.18 E-value=1.3e+03 Score=27.18 Aligned_cols=282 Identities=16% Similarity=0.140 Sum_probs=130.6
Q ss_pred HhhcCCchhhhhchHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHhcCCC-----
Q 005975 140 VLDSVPDIDMLGFLPDFLDGLFNMLSDSS----HEIRQQADSALWEFLQEIKNSPSV--DYGRMAEILVQRAASP----- 208 (666)
Q Consensus 140 ~L~svp~~~Li~yLp~fL~gLf~lLsD~~----~eVR~~A~~~L~~fL~eI~~~~~~--d~~~iI~iLl~~~~s~----- 208 (666)
.|-++++.|+++-+.+.|..+--+++-++ ..=...++-|..+++..|.....+ .-..+|..|-.++.++
T Consensus 19 dLFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~cL~hnl~p~g 98 (851)
T KOG3723|consen 19 DLFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDSCLEHNLRPFG 98 (851)
T ss_pred ccccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccCccCC
Confidence 46678888888888888888877765533 111222333445555555443333 2356677766665443
Q ss_pred ----CHHHHHHHHHHHHH-HHHhcCc-c-------cccchHhHHHHHhhhhcCCc-H-------------H-HHHHHHHH
Q 005975 209 ----DEFTRLTAITWINE-FVKLGGD-Q-------LVPYYADILGAILPCISDKE-E-------------K-IRVVARET 260 (666)
Q Consensus 209 ----d~~irl~Al~WL~~-~i~l~~~-~-------l~pylp~lL~~LL~~Lsd~~-~-------------e-IR~~A~~~ 260 (666)
|+-....|-..|+. |+.-.+. . -..|+++..+.|.+.++..- . | +-+.--.-
T Consensus 99 ~kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSg 178 (851)
T KOG3723|consen 99 KKDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSG 178 (851)
T ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhcc
Confidence 22233334343332 3332221 1 13466777777666665321 0 0 00000001
Q ss_pred HHHHHHh---hCCC-CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC-HH
Q 005975 261 NEELRAI---KADP-ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DE 335 (666)
Q Consensus 261 n~~L~~~---i~~~-~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~e 335 (666)
|.-|++. +.+. ++. +-+-++.+.-.|...+++.+.+.-.....+..+.++.+.. -+|.|...+.|.. ..
T Consensus 179 n~~LLrvlS~Vye~~P~~--i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~----ciP~L~g~l~ds~~~~ 252 (851)
T KOG3723|consen 179 NTMLLRVLSAVYEKQPQP--INPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQK----CIPFLIGHLKDSTHND 252 (851)
T ss_pred chHHHHHHHHHHhcCCCc--cCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHH----HHHHHHHHhccccchh
Confidence 1112222 1111 111 1233344444454444454544444444555555555443 4455555555544 33
Q ss_pred HHHHHHHHHHHHhh-ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhccc--CChHH----
Q 005975 336 VVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE--ADLDF---- 408 (666)
Q Consensus 336 Vv~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~--~dl~F---- 408 (666)
++...|..++.++- --..|-..+..+..++...-... .+||.++..+=+.. .-+.|
T Consensus 253 i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~~~~~-----------------a~i~T~~g~~d~e~a~~~l~~l~~q 315 (851)
T KOG3723|consen 253 IILNILKEIAVYEPVALNSFLEMLKEIGERFPYLTGQM-----------------ARIYTAVGHVDEERARSCLTYLVSQ 315 (851)
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCccHHH-----------------HHHHHHhcccchhhhcchHHHHHHH
Confidence 44444444554441 12334444555556665554321 12444443332211 22333
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHH
Q 005975 409 ACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFV 447 (666)
Q Consensus 409 ~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~ 447 (666)
.-.|.+++-.+|++..-|+-+|..=- .....+++|.
T Consensus 316 ~a~~~~s~~~~l~~eriLA~~~~~Ns---~l~~q~Di~~ 351 (851)
T KOG3723|consen 316 LANMEHSFHHILLLERILAITDTFNS---ILGPQRDIFR 351 (851)
T ss_pred HHHHHhcccHHHHHHHHHHHhCcccc---ccchhhHHHh
Confidence 12566777777777776666543211 1233466666
No 411
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=21.83 E-value=7.3e+02 Score=28.88 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChHHH
Q 005975 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEV 314 (666)
Q Consensus 236 p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~i 314 (666)
|+.+..++..+.... ..+..+..+.+..- +.+.+.-+.++.++.... ...+..++..-++||++.++-....
T Consensus 98 ~~~l~~Ll~~~~s~~-----l~~~~~~~lik~Li-P~~~v~~~~v~~ivs~Lg~~k~s~~~Q~~llrWLi~v~~~id~~- 170 (511)
T PF07778_consen 98 PEALDRLLDLILSPK-----LDQATNTRLIKCLI-PAERVSEDVVVRIVSWLGVGKPSPSTQALLLRWLIAVYDFIDDK- 170 (511)
T ss_pred HHHHHHHHHHHhcCC-----cchHHHHHHHHhcC-cCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccH-
Q ss_pred hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----------------hccchHHHHHHHHHhhccc
Q 005975 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-----------------KDLQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is-----------------~~~~~F~~fm~~LL~lf~~ 367 (666)
..++.+.+.+...|.+.. .+-..|.+|..+. .+-.+ ++-+.+||..|+.
T Consensus 171 -~~L~~~Y~vlF~~L~~~~--lrp~~chLL~llTrr~~VkpfRi~~Ll~L~~k~g~-~~~L~~LL~lyK~ 236 (511)
T PF07778_consen 171 -DVLSKLYGVLFNLLDYES--LRPYLCHLLYLLTRREHVKPFRIQKLLDLQNKFGM-DPHLQGLLSLYKS 236 (511)
T ss_pred -HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccCchHHHHHHHHHHhccCC-CHHHHHHHHHHHH
No 412
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.31 E-value=2.6e+02 Score=27.10 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.9
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~ 319 (666)
..++|.+...+.+..+.-..+|++|+..+...+.+.+.....
T Consensus 68 ~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~~~ 109 (164)
T PF13925_consen 68 VDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSNLS 109 (164)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999998888775543
No 413
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.04 E-value=3.1e+02 Score=25.02 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=54.1
Q ss_pred CChHhHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcC-----CC-----CHHHHHHHH
Q 005975 275 FDVGPILSIATRQL---SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-----DP-----SDEVVLLVL 341 (666)
Q Consensus 275 ~dl~~il~~L~~~L---~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls-----D~-----s~eVv~~~l 341 (666)
.++..|+++|.+.| ...+|....-||.-|-.|..+.++.+...+..-...+ ..|. |+ ...||.+|-
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I-~~l~~f~~~d~~g~d~~~~VR~~A~ 113 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDII-RELQDFQYVDPKGKDQGQNVREKAK 113 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHH-HGGGG---BBTTSTBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-hhcceeeccCCCCccHHHHHHHHHH
Confidence 44689999999999 6778999999999999999999998887765444322 3332 22 124888888
Q ss_pred HHHHHHhh
Q 005975 342 EVHACIAK 349 (666)
Q Consensus 342 ~lLa~Is~ 349 (666)
+++..+.+
T Consensus 114 ~i~~lL~d 121 (125)
T PF01417_consen 114 EILELLND 121 (125)
T ss_dssp HHHHHHTS
T ss_pred HHHHHhCC
Confidence 88777653
No 414
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=20.91 E-value=9.9e+02 Score=26.40 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=80.3
Q ss_pred cccHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCC--------------hhHHH
Q 005975 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS--------------HEIRQ 173 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~--------------~eVR~ 173 (666)
.+++......+.+++. ..||.|=.+++.-+-...+--..=.-.-+..+...|++++.|.. .|+..
T Consensus 136 ~l~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~ 215 (356)
T PF03542_consen 136 YLPISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQV 215 (356)
T ss_pred eeeHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHH
Confidence 5788899999999997 48999988877655533221111001127777778888877643 13333
Q ss_pred HHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc
Q 005975 174 QADSALWEFLQEIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (666)
Q Consensus 174 ~A~~~L~~fL~eI~~~~~~---d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls 247 (666)
.....|..++. -.... +-++||..+...+.++ ....|+..+...+..-|..+.+++|.+|..+-+...
T Consensus 216 ~~~~~Ls~Lis---Yh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 216 CVFPVLSALIS---YHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHH---HHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 33333333331 11111 2357888887776653 456678888777766778888777777766544433
No 415
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=20.87 E-value=1.2e+02 Score=27.30 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=22.8
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHhhcCC
Q 005975 116 IPLLRERMN--VLNPYVRQFLVGWITVLDSVP 145 (666)
Q Consensus 116 IPlL~eri~--~~np~vR~~alswL~~L~svp 145 (666)
||.++.+.. +.||++|++++-+|+++..-.
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 566665553 479999999999999886543
No 416
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=20.79 E-value=1.1e+03 Score=25.49 Aligned_cols=202 Identities=16% Similarity=0.167 Sum_probs=115.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----hhhhhchHHHHHHHHHhcCCCC-------------hhHHHHHHHH
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPD----IDMLGFLPDFLDGLFNMLSDSS-------------HEIRQQADSA 178 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~----~~Li~yLp~fL~gLf~lLsD~~-------------~eVR~~A~~~ 178 (666)
+..+-..+....+.+..-++.-+..+.+-.+ .++..+++-=++++-+++.-.. ++||......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6667777777777666677777777766322 3466666655666655552211 2899988777
Q ss_pred HHHHHHHhhcCCC---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-----cccccchHhHHHHHhhhhcCCc
Q 005975 179 LWEFLQEIKNSPS---VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-----DQLVPYYADILGAILPCISDKE 250 (666)
Q Consensus 179 L~~fL~eI~~~~~---~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~-----~~l~pylp~lL~~LL~~Lsd~~ 250 (666)
+-.|++.-..... ..-.+++..+.+.+...++++-...++.+.+-+-..+ ....-|=+..|..|.....+.+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 7777753311000 0123457777788877666766667776665433221 1123344556666777566665
Q ss_pred H----HHHHHHHHHHHHHHHhhCCCCCCC-------------------------C-hHhHHHHHHHhcCCCcHHHHHHHH
Q 005975 251 E----KIRVVARETNEELRAIKADPADGF-------------------------D-VGPILSIATRQLSSEWEATRIEAL 300 (666)
Q Consensus 251 ~----eIR~~A~~~n~~L~~~i~~~~~~~-------------------------d-l~~il~~L~~~L~~~~~~tR~aaL 300 (666)
+ .+++.|.+.. +..+.++..++ . ...++-.+...+. ..+..+..-
T Consensus 218 ~~~~~~~~~~vh~fL---~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lk-p~e~~~q~~- 292 (330)
T PF11707_consen 218 EDEKSSVADLVHEFL---LALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLK-PWEDDRQQE- 292 (330)
T ss_pred CcccchHHHHHHHHH---HHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCC-CCccHHHHH-
Confidence 5 6666665554 44443321111 0 1233333444443 333344443
Q ss_pred HHHHHHHhhChHHHhhhhHHHHH
Q 005975 301 HWISTLLNRHRTEVLHFLNDIFD 323 (666)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~~l~p 323 (666)
-+..+.+.||+=+.+|+...-.
T Consensus 293 -Lvl~Il~~~PeLva~Y~~~~~~ 314 (330)
T PF11707_consen 293 -LVLKILKACPELVAPYFNNLPY 314 (330)
T ss_pred -HHHHHHHHChHHHHHHHHhhhh
Confidence 3889999999999988877643
No 417
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=20.58 E-value=7.3e+02 Score=30.06 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHhhc--CC-------chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHH
Q 005975 125 VLNPYVRQFLVGWITVLDS--VP-------DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (666)
Q Consensus 125 ~~np~vR~~alswL~~L~s--vp-------~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~ 195 (666)
..+...|+.+|++++.+-- .| +.+-..|+..+++-+..-+++.+.++|=.+.+.+ .+.+.+-+-.+-+
T Consensus 207 ~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~---aki~srl~w~l~~ 283 (993)
T COG5234 207 QENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGL---AKIISRLPWNLAE 283 (993)
T ss_pred ccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhH---HHHHhhcccccHH
Confidence 4557889999999987632 12 1224567777777777777778888887665544 4434333333434
Q ss_pred HHHH---HHHHhcC-----CCCHHHHHHHHHHHHHHHHh--cCcccccchHh-HHHHHhhhhcCCc
Q 005975 196 RMAE---ILVQRAA-----SPDEFTRLTAITWINEFVKL--GGDQLVPYYAD-ILGAILPCISDKE 250 (666)
Q Consensus 196 ~iI~---iLl~~~~-----s~d~~irl~Al~WL~~~i~l--~~~~l~pylp~-lL~~LL~~Lsd~~ 250 (666)
.+++ .+.+++- .+-.-+=..-+.|+..+... .+.....|... ++|.+.+.++++.
T Consensus 284 sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ala~~~~id~~d~~i~~iI~kg~~y~~ 349 (993)
T COG5234 284 SFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFALAGAGLIDYSDCLILPIIEKGLSYEV 349 (993)
T ss_pred HHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHHHhhccccchhhhhhhhheccccceee
Confidence 4444 3333311 11000000112465544432 33333444443 5667777888764
No 418
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=20.08 E-value=4.6e+02 Score=22.77 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=40.4
Q ss_pred ccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHH
Q 005975 421 LTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASA 475 (666)
Q Consensus 421 LTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~ 475 (666)
||..+..+++..=.+.-.....+.|+.+|-+||-=|...+|--||-.-.|.+.+.
T Consensus 32 L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 32 LTDEDKEQILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred cCHHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHHH
Confidence 4666666666654331123456889999999999999999999999888876654
Done!