Query 005975
Match_columns 666
No_of_seqs 267 out of 644
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.9 2.3E-24 7.8E-29 255.1 44.4 368 28-402 86-494 (852)
2 4fdd_A Transportin-1; heat rep 99.9 9.5E-22 3.3E-26 232.7 43.6 434 24-461 248-791 (852)
3 1b3u_A Protein (protein phosph 99.9 2.1E-22 7.2E-27 225.4 28.1 378 28-420 160-547 (588)
4 1b3u_A Protein (protein phosph 99.9 2.2E-21 7.4E-26 217.2 29.7 309 28-349 238-548 (588)
5 2bpt_A Importin beta-1 subunit 99.9 2.2E-20 7.5E-25 218.9 36.2 376 24-401 403-835 (861)
6 2bpt_A Importin beta-1 subunit 99.9 2.8E-19 9.7E-24 209.4 42.9 393 24-422 257-712 (861)
7 1ibr_B P95, importin beta-1 su 99.9 1.7E-20 5.8E-25 203.6 29.8 331 29-366 87-461 (462)
8 1qgr_A Protein (importin beta 99.9 9.6E-19 3.3E-23 205.3 42.5 339 24-367 250-702 (876)
9 1u6g_C TIP120 protein, CAND1; 99.9 4.9E-19 1.7E-23 217.3 40.4 402 20-424 243-724 (1230)
10 1u6g_C TIP120 protein, CAND1; 99.9 1.1E-19 3.7E-24 223.1 31.2 393 26-422 127-599 (1230)
11 1qgr_A Protein (importin beta 99.8 1.6E-18 5.4E-23 203.5 37.7 351 28-386 86-480 (876)
12 1ibr_B P95, importin beta-1 su 99.7 1.7E-15 5.9E-20 164.1 31.3 342 42-389 47-441 (462)
13 2vgl_B AP-2 complex subunit be 99.7 6.3E-15 2.2E-19 168.2 33.4 347 28-398 117-471 (591)
14 2jdq_A Importin alpha-1 subuni 99.7 1.6E-15 5.5E-20 164.3 25.3 351 33-385 21-390 (450)
15 2jdq_A Importin alpha-1 subuni 99.7 2E-15 6.7E-20 163.6 23.7 318 32-350 64-391 (450)
16 2qk2_A LP04448P; mini spindles 99.7 5.4E-15 1.9E-19 149.1 21.1 193 30-270 13-209 (242)
17 1wa5_B Importin alpha subunit; 99.7 3.5E-15 1.2E-19 167.0 21.6 356 30-385 85-457 (530)
18 1wa5_B Importin alpha subunit; 99.7 1.9E-15 6.5E-20 169.2 19.4 319 31-349 129-457 (530)
19 4b8j_A Importin subunit alpha- 99.6 9.7E-15 3.3E-19 163.1 24.1 319 31-349 116-443 (528)
20 2vgl_B AP-2 complex subunit be 99.6 8.3E-14 2.8E-18 159.0 28.2 349 31-403 48-402 (591)
21 4b8j_A Importin subunit alpha- 99.6 7.3E-14 2.5E-18 156.0 25.9 318 31-350 73-401 (528)
22 1w63_A Adapter-related protein 99.6 2.4E-13 8.3E-18 156.1 30.0 368 27-425 137-544 (618)
23 2qk2_A LP04448P; mini spindles 99.6 2.7E-14 9.1E-19 144.1 18.2 208 142-359 5-217 (242)
24 2qk1_A Protein STU2; STU2P, XM 99.6 1.7E-13 5.9E-18 140.1 21.2 216 143-361 7-234 (249)
25 1oyz_A Hypothetical protein YI 99.5 6.3E-13 2.2E-17 136.1 23.3 255 31-346 22-279 (280)
26 2iw3_A Elongation factor 3A; a 99.5 4.3E-13 1.5E-17 159.7 24.6 251 32-291 54-357 (986)
27 2vgl_A Adaptor protein complex 99.5 4.2E-12 1.4E-16 146.0 30.8 315 27-367 141-489 (621)
28 2qk1_A Protein STU2; STU2P, XM 99.5 3.5E-13 1.2E-17 137.8 18.3 196 32-270 16-224 (249)
29 1wa5_C Importin alpha RE-expor 99.5 7.9E-12 2.7E-16 150.2 32.7 352 27-386 80-526 (960)
30 1w63_A Adapter-related protein 99.5 1.2E-11 4E-16 142.1 27.7 344 31-402 69-433 (618)
31 2z6h_A Catenin beta-1, beta-ca 99.5 9.2E-11 3.2E-15 134.7 35.0 349 31-385 13-382 (644)
32 2vgl_A Adaptor protein complex 99.5 5.3E-12 1.8E-16 145.2 24.5 348 31-402 73-452 (621)
33 1jdh_A Beta-catenin; beta-cate 99.4 1.1E-10 3.9E-15 128.9 32.3 338 29-370 14-411 (529)
34 2z6g_A B-catenin; FULL-length, 99.4 2E-10 6.9E-15 135.3 35.7 347 31-385 149-518 (780)
35 3ul1_B Importin subunit alpha- 99.4 1.4E-11 5E-16 137.9 23.7 358 33-402 101-475 (510)
36 2z6g_A B-catenin; FULL-length, 99.4 2.8E-10 9.7E-15 134.1 34.6 379 34-425 117-522 (780)
37 3ltj_A Alpharep-4; protein eng 99.4 8.2E-12 2.8E-16 121.4 17.2 186 28-264 10-196 (201)
38 2x19_B Importin-13; nuclear tr 99.4 2.9E-09 9.9E-14 127.2 42.9 363 27-400 485-908 (963)
39 3ltm_A Alpha-REP4; protein eng 99.4 1.2E-11 4.2E-16 121.1 17.9 183 31-264 18-201 (211)
40 1oyz_A Hypothetical protein YI 99.4 1.6E-10 5.4E-15 118.1 26.5 252 116-416 25-277 (280)
41 3tpo_A Importin subunit alpha- 99.4 8.4E-11 2.9E-15 132.1 25.4 317 32-348 119-448 (529)
42 2z6h_A Catenin beta-1, beta-ca 99.4 2.1E-10 7.4E-15 131.6 29.1 328 32-367 56-405 (644)
43 3ltm_A Alpha-REP4; protein eng 99.3 4.7E-11 1.6E-15 116.9 19.9 187 113-350 18-204 (211)
44 2x19_B Importin-13; nuclear tr 99.3 7.3E-10 2.5E-14 132.4 33.9 370 44-423 115-601 (963)
45 3ibv_A Exportin-T; karyopherin 99.3 1.3E-10 4.5E-15 140.1 27.3 351 44-401 102-588 (980)
46 2x1g_F Cadmus; transport prote 99.3 9.9E-10 3.4E-14 131.7 33.7 313 27-348 500-857 (971)
47 3ul1_B Importin subunit alpha- 99.3 6.3E-10 2.1E-14 124.6 29.8 385 75-480 59-476 (510)
48 3now_A UNC-45 protein, SD10334 99.3 2.3E-10 7.7E-15 134.5 26.0 382 35-420 333-781 (810)
49 3m1i_C Exportin-1; heat repeat 99.3 5.8E-10 2E-14 135.2 29.8 333 45-388 113-572 (1049)
50 3tpo_A Importin subunit alpha- 99.3 1.4E-09 4.9E-14 122.0 30.7 346 75-424 78-452 (529)
51 1jdh_A Beta-catenin; beta-cate 99.3 1.1E-08 3.6E-13 113.1 36.8 343 73-425 17-389 (529)
52 3ltj_A Alpharep-4; protein eng 99.3 1.7E-10 5.7E-15 112.1 19.5 186 112-348 12-197 (201)
53 3now_A UNC-45 protein, SD10334 99.3 2E-09 7E-14 126.4 31.6 395 31-435 289-748 (810)
54 2x1g_F Cadmus; transport prote 99.3 2E-09 6.9E-14 129.0 32.3 351 28-389 344-764 (971)
55 4hxt_A De novo protein OR329; 99.2 1E-10 3.5E-15 116.1 16.0 236 33-268 3-243 (252)
56 4hxt_A De novo protein OR329; 99.2 2.3E-10 7.9E-15 113.5 14.9 234 116-349 4-241 (252)
57 4db8_A Armadillo-repeat protei 99.1 7.8E-10 2.7E-14 110.5 16.3 233 32-264 12-249 (252)
58 1wa5_C Importin alpha RE-expor 99.1 2.3E-08 7.7E-13 120.1 31.0 311 43-368 416-773 (960)
59 4db8_A Armadillo-repeat protei 99.1 2.7E-09 9.3E-14 106.6 18.9 235 75-349 14-251 (252)
60 4db6_A Armadillo repeat protei 99.0 4.5E-09 1.6E-13 102.1 14.9 195 30-224 10-208 (210)
61 4hat_C Exportin-1; heat repeat 99.0 1.6E-07 5.4E-12 113.7 30.5 333 45-387 113-571 (1023)
62 1xm9_A Plakophilin 1; armadill 99.0 5.5E-08 1.9E-12 107.4 23.9 315 33-351 3-408 (457)
63 3l6x_A Catenin delta-1; cateni 99.0 4E-07 1.4E-11 103.6 31.0 316 31-350 47-433 (584)
64 4ffb_C Protein STU2; tubulin f 98.9 1.6E-08 5.5E-13 104.1 16.0 188 37-270 14-216 (278)
65 3a6p_A Exportin-5; exportin-5, 98.9 4.5E-07 1.5E-11 111.6 30.5 352 44-401 108-635 (1204)
66 3ibv_A Exportin-T; karyopherin 98.9 1.3E-06 4.4E-11 105.4 33.6 319 27-348 327-729 (980)
67 4ffb_C Protein STU2; tubulin f 98.8 2.5E-08 8.6E-13 102.6 13.6 191 116-348 12-211 (278)
68 4db6_A Armadillo repeat protei 98.8 1.3E-08 4.3E-13 99.0 9.9 195 155-349 12-209 (210)
69 3nmz_A APC variant protein; pr 98.8 4.4E-07 1.5E-11 100.5 21.6 317 32-350 70-451 (458)
70 2of3_A ZYG-9; multifunctional 98.7 1.3E-06 4.5E-11 89.8 23.4 189 33-270 47-240 (266)
71 3m1i_C Exportin-1; heat repeat 98.7 8.4E-05 2.9E-09 90.0 41.8 296 26-326 338-694 (1049)
72 4hat_C Exportin-1; heat repeat 98.7 3.4E-06 1.2E-10 102.1 27.7 369 27-436 535-1000(1023)
73 2iw3_A Elongation factor 3A; a 98.7 7.4E-07 2.5E-11 106.5 20.9 265 86-366 28-300 (986)
74 1xm9_A Plakophilin 1; armadill 98.6 9.3E-07 3.2E-11 97.5 19.6 311 31-349 43-449 (457)
75 3gjx_A Exportin-1; transport, 98.6 1E-05 3.5E-10 98.1 27.3 330 44-384 124-594 (1073)
76 1xqr_A HSPBP1 protein; armadil 98.5 2.1E-06 7E-11 89.9 17.2 189 32-223 81-285 (296)
77 2of3_A ZYG-9; multifunctional 98.5 2.1E-06 7.1E-11 88.4 16.6 197 164-375 55-260 (266)
78 3l6x_A Catenin delta-1; cateni 98.5 3.8E-05 1.3E-09 87.4 27.5 312 32-349 90-476 (584)
79 2db0_A 253AA long hypothetical 98.4 4.1E-05 1.4E-09 74.0 20.2 209 149-375 26-236 (253)
80 3nmz_A APC variant protein; pr 98.4 1.2E-05 4.2E-10 88.9 19.3 253 133-387 167-452 (458)
81 3nmw_A APC variant protein; AR 98.3 1.1E-05 3.8E-10 86.3 17.1 224 126-350 96-335 (354)
82 3tjz_B Coatomer subunit gamma; 98.3 6.3E-06 2.2E-10 88.3 14.0 285 31-348 67-352 (355)
83 3opb_A SWI5-dependent HO expre 98.3 0.00028 9.6E-09 82.2 28.3 338 46-386 308-729 (778)
84 1xqr_A HSPBP1 protein; armadil 98.2 3.7E-05 1.3E-09 80.3 18.9 230 32-263 28-284 (296)
85 1te4_A Conserved protein MTH18 98.2 1.3E-07 4.3E-12 86.2 -0.2 121 29-181 9-130 (131)
86 3opb_A SWI5-dependent HO expre 98.2 0.00011 3.8E-09 85.5 23.1 317 30-349 332-728 (778)
87 3nmw_A APC variant protein; AR 98.2 9.7E-06 3.3E-10 86.8 12.9 221 45-267 97-335 (354)
88 3b2a_A TON_1937, putative unch 98.2 0.00044 1.5E-08 69.3 23.6 236 16-264 18-259 (265)
89 3gjx_A Exportin-1; transport, 98.2 0.00067 2.3E-08 82.3 29.8 337 27-386 561-954 (1073)
90 4ady_A RPN2, 26S proteasome re 98.1 0.0006 2E-08 81.0 26.2 248 46-333 451-701 (963)
91 1lrv_A LRV, leucine-rich repea 98.0 2.7E-06 9.2E-11 86.6 4.3 184 39-343 57-240 (244)
92 4ady_A RPN2, 26S proteasome re 98.0 0.0018 6E-08 77.0 27.6 298 20-366 380-698 (963)
93 3b2a_A TON_1937, putative unch 97.9 0.0015 5.2E-08 65.5 21.7 222 115-347 34-259 (265)
94 2db0_A 253AA long hypothetical 97.9 0.0041 1.4E-07 60.2 23.7 216 27-264 27-244 (253)
95 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00025 8.5E-09 78.8 15.6 237 33-301 175-429 (800)
96 1te4_A Conserved protein MTH18 97.7 5.5E-05 1.9E-09 68.5 6.7 85 34-139 44-129 (131)
97 3a6p_A Exportin-5; exportin-5, 97.6 0.035 1.2E-06 68.3 31.2 326 32-367 249-682 (1204)
98 1lrv_A LRV, leucine-rich repea 97.4 7.3E-05 2.5E-09 76.0 4.2 162 37-302 79-240 (244)
99 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0012 4E-08 73.6 13.1 232 109-362 170-416 (800)
100 3tjz_B Coatomer subunit gamma; 97.3 0.03 1E-06 59.8 22.9 224 156-401 27-260 (355)
101 3l9t_A Putative uncharacterize 97.3 0.0078 2.7E-07 60.5 16.9 138 29-184 68-207 (240)
102 1vsy_5 Proteasome activator BL 97.2 0.00098 3.4E-08 80.3 10.7 319 27-365 503-892 (997)
103 1vsy_5 Proteasome activator BL 96.9 0.0047 1.6E-07 74.5 13.1 309 4-348 617-965 (997)
104 3tt9_A Plakophilin-2; cell adh 96.7 0.0056 1.9E-07 61.6 10.0 188 197-388 9-232 (233)
105 4gmo_A Putative uncharacterize 96.6 0.0017 5.8E-08 75.2 6.0 152 33-184 35-214 (684)
106 3l9t_A Putative uncharacterize 96.5 0.089 3.1E-06 52.8 17.0 154 110-288 67-221 (240)
107 3u0r_A Apoptosis inhibitor 5; 96.5 0.13 4.6E-06 56.5 19.7 166 148-334 23-191 (507)
108 3tt9_A Plakophilin-2; cell adh 96.1 0.043 1.5E-06 55.1 12.3 149 32-183 8-179 (233)
109 3gs3_A Symplekin, LD45768P; he 95.8 0.77 2.6E-05 46.7 19.9 113 110-226 49-174 (257)
110 3o2t_A Symplekin; heat repeat, 95.0 4.8 0.00016 43.2 29.2 264 110-428 59-328 (386)
111 4gmo_A Putative uncharacterize 94.7 0.57 1.9E-05 54.0 17.1 72 113-185 34-106 (684)
112 3grl_A General vesicular trans 94.7 3.2 0.00011 47.4 22.5 304 43-352 33-397 (651)
113 3u0r_A Apoptosis inhibitor 5; 94.7 6.4 0.00022 43.3 25.1 133 75-226 31-164 (507)
114 3gs3_A Symplekin, LD45768P; he 94.5 4.7 0.00016 40.8 22.9 163 193-359 50-254 (257)
115 4atg_A TAF6; transcription, TF 94.5 1.2 3.9E-05 43.5 15.9 149 147-310 7-164 (196)
116 3grl_A General vesicular trans 93.5 1.4 4.8E-05 50.3 16.4 169 194-368 19-220 (651)
117 4atg_A TAF6; transcription, TF 93.3 1.4 4.9E-05 42.9 14.0 141 65-221 7-158 (196)
118 1vsy_4 Proteasome activator BL 92.4 21 0.00072 41.9 31.0 115 25-142 332-454 (799)
119 1vsy_4 Proteasome activator BL 91.6 25 0.00087 41.2 27.6 199 30-267 230-456 (799)
120 1w9c_A CRM1 protein, exportin 91.0 17 0.00057 38.0 19.9 196 232-435 68-311 (321)
121 1upk_A MO25 protein; transfera 90.9 18 0.0006 38.0 23.0 227 113-386 77-333 (341)
122 3o2t_A Symplekin; heat repeat, 88.9 28 0.00094 37.3 27.2 177 28-246 59-273 (386)
123 3ldz_A STAM-1, signal transduc 87.6 3.4 0.00012 37.8 10.3 75 116-190 44-120 (140)
124 1w9c_A CRM1 protein, exportin 86.9 3.3 0.00011 43.3 10.9 114 112-225 67-196 (321)
125 1x5b_A Signal transducing adap 85.9 3.5 0.00012 38.8 9.6 76 115-190 53-131 (163)
126 2bnx_A Diaphanous protein homo 85.7 19 0.00065 38.4 16.4 175 320-532 100-282 (386)
127 3eg5_B Protein diaphanous homo 85.5 7.8 0.00027 41.4 13.3 174 321-532 163-344 (383)
128 3fga_B Serine/threonine-protei 83.3 31 0.001 37.1 16.6 231 114-375 129-393 (403)
129 3ebb_A Phospholipase A2-activa 82.2 49 0.0017 34.0 18.0 152 280-433 104-275 (304)
130 1mhq_A ADP-ribosylation factor 80.3 10 0.00034 35.0 10.1 73 116-188 40-120 (148)
131 1upk_A MO25 protein; transfera 80.2 62 0.0021 33.9 20.8 193 29-228 75-286 (341)
132 3jxy_A Alkylpurine DNA glycosy 79.8 17 0.00058 35.8 12.3 193 140-359 12-206 (232)
133 1elk_A Target of MYB1; superhe 77.8 11 0.00039 35.0 9.7 75 116-190 55-136 (157)
134 1lsh_A Lipovitellin (LV-1N, LV 76.6 1.4E+02 0.0047 36.0 26.0 187 235-434 389-590 (1056)
135 1lsh_A Lipovitellin (LV-1N, LV 75.7 1.5E+02 0.005 35.8 23.5 167 156-349 392-576 (1056)
136 3g2s_A C-terminal fragment of 75.0 22 0.00076 32.8 10.8 76 113-188 47-130 (149)
137 3eg5_B Protein diaphanous homo 74.6 17 0.00059 38.7 11.3 126 215-348 98-245 (383)
138 1dvp_A HRS, hepatocyte growth 73.2 21 0.00072 34.9 10.8 78 114-191 42-122 (220)
139 2npp_B PP2A, B subunit, serine 69.6 1.3E+02 0.0045 32.7 17.0 220 27-267 156-400 (449)
140 1juq_A ADP-ribosylation factor 66.8 21 0.00073 33.6 8.9 73 116-188 52-132 (171)
141 3dad_A FH1/FH2 domain-containi 66.1 73 0.0025 33.4 13.4 105 41-147 169-291 (339)
142 3jxy_A Alkylpurine DNA glycosy 66.1 21 0.00073 35.0 9.1 75 156-236 132-206 (232)
143 1vdy_A Hypothetical protein (R 64.0 13 0.00045 34.1 6.5 71 194-264 47-128 (140)
144 2jak_A Serine/threonine-protei 63.8 1.4E+02 0.0049 31.8 15.5 184 113-344 173-362 (392)
145 3g2s_A C-terminal fragment of 62.8 58 0.002 29.9 10.8 71 278-348 47-125 (149)
146 2f31_A Diaphanous protein homo 62.3 26 0.00089 34.4 8.9 95 320-435 96-193 (233)
147 2b6c_A Hypothetical protein EF 60.4 38 0.0013 32.9 9.6 178 144-349 10-188 (220)
148 3ldz_A STAM-1, signal transduc 60.2 31 0.0011 31.3 8.4 72 277-348 40-113 (140)
149 1mhq_A ADP-ribosylation factor 59.3 95 0.0033 28.3 11.6 71 278-348 37-115 (148)
150 3s4w_B Protein FACD2, fanconi 58.0 79 0.0027 39.1 13.6 116 228-348 391-506 (1323)
151 1juq_A ADP-ribosylation factor 54.7 98 0.0034 29.0 11.1 71 278-348 49-127 (171)
152 1x5b_A Signal transducing adap 53.7 50 0.0017 30.8 8.8 67 278-348 51-124 (163)
153 3zyq_A Hepatocyte growth facto 51.7 44 0.0015 32.7 8.5 78 112-189 43-123 (226)
154 2x6h_A GH13170P, VPS34, phosph 51.5 19 0.00066 41.5 6.5 46 111-161 108-153 (696)
155 1vdy_A Hypothetical protein (R 49.5 29 0.00097 31.8 6.1 66 288-356 20-86 (140)
156 2b6c_A Hypothetical protein EF 47.3 2E+02 0.0068 27.6 12.7 91 113-218 123-213 (220)
157 2fv2_A RCD1 required for cell 45.0 1E+02 0.0035 31.2 9.8 146 210-389 116-268 (268)
158 3ut4_A CTHE_2751, putative unc 43.4 55 0.0019 29.7 6.9 75 5-85 33-108 (134)
159 2bnx_A Diaphanous protein homo 43.2 82 0.0028 33.4 9.5 32 279-310 100-131 (386)
160 4flb_A Regulation of nuclear P 43.2 1.1E+02 0.0038 26.9 9.1 118 234-364 5-127 (132)
161 1elk_A Target of MYB1; superhe 39.8 1E+02 0.0036 28.3 8.5 72 277-348 51-129 (157)
162 3dad_A FH1/FH2 domain-containi 39.3 3.5E+02 0.012 28.2 14.3 149 35-186 121-288 (339)
163 3rru_A TOM1L1 protein; structu 37.4 90 0.0031 28.7 7.6 75 116-190 55-136 (152)
164 1ho8_A Vacuolar ATP synthase s 32.5 5.3E+02 0.018 28.2 21.0 149 117-266 274-476 (480)
165 3ls8_A Phosphatidylinositol 3- 31.9 24 0.00084 40.0 3.3 33 126-161 107-139 (614)
166 3fga_B Serine/threonine-protei 31.3 5.1E+02 0.017 27.6 20.1 199 27-232 123-373 (403)
167 3twe_A Alpha4H; unknown functi 30.1 48 0.0016 20.9 2.9 12 424-435 15-26 (27)
168 2npp_B PP2A, B subunit, serine 28.2 6E+02 0.02 27.5 21.8 183 114-344 162-350 (449)
169 4flb_A Regulation of nuclear P 28.1 1.9E+02 0.0064 25.4 8.0 97 152-259 5-105 (132)
170 1dvp_A HRS, hepatocyte growth 27.4 4.1E+02 0.014 25.4 12.0 86 181-270 28-119 (220)
171 3zyq_A Hepatocyte growth facto 26.8 1.6E+02 0.0054 28.7 7.8 69 277-348 43-117 (226)
172 1e7u_A Phosphatidylinositol 3- 26.1 35 0.0012 40.8 3.3 33 126-161 495-527 (961)
173 2km4_A Regulator of TY1 transp 24.1 3.8E+02 0.013 23.8 11.5 116 315-435 1-133 (142)
174 2wxf_A Phosphatidylinositol-4, 23.5 62 0.0021 38.6 4.8 47 110-161 470-516 (940)
175 2p6v_A Transcription initiatio 23.2 3.2E+02 0.011 23.9 7.9 81 152-255 21-103 (114)
176 4fu3_A Regulation of nuclear P 22.2 3.3E+02 0.011 23.7 8.5 119 234-366 4-130 (135)
177 1sz9_A PCF11 protein; RNA poly 20.9 3.6E+02 0.012 24.2 8.5 101 150-259 6-107 (144)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.95 E-value=2.3e-24 Score=255.14 Aligned_cols=368 Identities=16% Similarity=0.179 Sum_probs=307.1
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.....|.+.++.+++|+++.||..+++++..|++.. ....|+++++.|..++.++++.+|++| .+|..++++....
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 86 GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 345678999999999999999999999999998753 335789999999999999999999999 8899999887643
Q ss_pred cc----cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 107 SD----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 107 ~~----~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
.. ...++.++|.+.+.+.+.++.+|..++.++..+....+..+..+++++++.|++.++|++++||+.|+.+|..+
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 21 22378899999999999999999999999998887767778899999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--CcccccchHhHHHHHhhhhc-----------C-
Q 005975 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCIS-----------D- 248 (666)
Q Consensus 183 L~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~--~~~l~pylp~lL~~LL~~Ls-----------d- 248 (666)
.+........+++.+++.++..+.+.++.+|..|++++..+++.. ...+.||+++++|.+++.|. |
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 986544333467899999999999999999999999777766532 23467899999999999993 3
Q ss_pred ----------CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh
Q 005975 249 ----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (666)
Q Consensus 249 ----------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l 318 (666)
.+..+|..|.++.+.+....++ .-++.+++.+.+.+.+++|.+|.+|+.+++.+.+++++.+.+++
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l 398 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1124688898888888776642 23568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh---
Q 005975 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--- 389 (666)
Q Consensus 319 ~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--- 389 (666)
+.++|.+++.|+|+++.|+..++|+++++++ ...|+..++..|++.+.++..-.+..+...+.++|...+.
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence 9999999999999999999999999999994 3578999999999999777666677666777788766544
Q ss_pred ---HHHHHHHHHhhcc
Q 005975 390 ---ERVYRELSTILEG 402 (666)
Q Consensus 390 ---E~Iy~~la~iL~~ 402 (666)
+.+...|...+.+
T Consensus 479 ~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 479 PYLAYILDTLVFAFSK 494 (852)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 2455555555543
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.92 E-value=9.5e-22 Score=232.70 Aligned_cols=434 Identities=17% Similarity=0.192 Sum_probs=324.2
Q ss_pred hhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhh-----------cC------
Q 005975 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLS-----------AD------ 84 (666)
Q Consensus 24 ~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv--~r~~il~~f~eIfd~L~kl~-----------~D------ 84 (666)
..+.+|++.+++.++.++.|+|..||..|++.+.++++. ++..+.++...+++.+++.+ +|
T Consensus 248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 345678889999999999999999999999999998753 33444578889999998776 44
Q ss_pred -----CchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHH
Q 005975 85 -----SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLD 158 (666)
Q Consensus 85 -----~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~ 158 (666)
.+.+||.+| .+|+++.+... ..-++.++|.+.+.+++.+|.+|..++.++..+.+.++..+.+|++.+++
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~~----~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVYR----DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 345678777 88998887543 33578899999999999999999999999999999888888899999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHh
Q 005975 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYAD 237 (666)
Q Consensus 159 gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~-~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~ 237 (666)
.|++.+.|+++.||.+|+.+++.+.+.+.... ...+..+++.++..+.++++.+|..|+.++..+++..+..+.||+|.
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ 483 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 483 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHH
Confidence 99999999999999999999999998776532 45689999999999999999999999999999999888889999999
Q ss_pred HHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC------------------------CCCC------------------C-
Q 005975 238 ILGAILPCISDKEEKIRVVARETNEELRAIKA------------------------DPAD------------------G- 274 (666)
Q Consensus 238 lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~------------------------~~~~------------------~- 274 (666)
+++.++.++...+.+....+.++.+.+.+.++ +... .
T Consensus 484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~ 563 (852)
T 4fdd_A 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 563 (852)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhH
Confidence 99999999875554443333343333322111 1100 0
Q ss_pred -CChHhH----HHHHHHh-------------cCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCH
Q 005975 275 -FDVGPI----LSIATRQ-------------LSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSD 334 (666)
Q Consensus 275 -~dl~~i----l~~L~~~-------------L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~ 334 (666)
.+++.+ ++.+... +..++...|.+++..++.++++.++++.+++ +++++.++.++.|+++
T Consensus 564 ~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 643 (852)
T 4fdd_A 564 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP 643 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCCh
Confidence 011232 2233322 2223566899999999999999999999998 8999999999999999
Q ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhccc
Q 005975 335 EVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE 403 (666)
Q Consensus 335 eVv~~~l~lLa~Is~-----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~~~ 403 (666)
.|+..+.++++.++. -..|+..++..+.+.+..+..-...-+...+-.+|..++. +.+...+-.++.+.
T Consensus 644 ~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~ 723 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP 723 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCC
Confidence 999999999999983 2467788888888888554332222223345566655543 57888888888652
Q ss_pred -CChHHHHHHHHHHHHHhccchh-----HHH----HHHHHHhccCCcchHHHHHHHHHhhccChHHHH
Q 005975 404 -ADLDFACTMVQALNLILLTSSE-----LSE----LRDLLKKSLVNPAGKDLFVSLYASWCHSPMAII 461 (666)
Q Consensus 404 -~dl~F~~~mVq~Ln~iLLTs~E-----l~~----lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~l 461 (666)
.......+.+.++-.+...-++ +.. +-+.|++.-++.+....|.+|+.-=.+||-+++
T Consensus 724 ~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~ 791 (852)
T 4fdd_A 724 NTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 791 (852)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred CCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHH
Confidence 2334555666666666665433 333 234554422455677888888777777887544
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.90 E-value=2.1e-22 Score=225.40 Aligned_cols=378 Identities=13% Similarity=0.106 Sum_probs=290.3
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.+.+.++|.+...+.|+++.||..|++++..+++...++ .+.+++++.+..++.|.+..||.+| ..|..+.+....
T Consensus 160 ~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-
Confidence 345778888889999999999999999999998866544 3467889999999999999999998 788887764432
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
....+.++|.+.+.+.+.++.+|..++..+..+....+.+ .+.+.+++.+.+++.|++++||.+|..+|+.+.+.+
T Consensus 237 --~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 237 --EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp --HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 1235779999999999999999999999999887644333 256788999999999999999999999999999866
Q ss_pred hcCCC--CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 187 KNSPS--VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 187 ~~~~~--~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
+.... ..++.++|.+...+.++++.+|..++.++..+....+... +.+.++|.++..+.|+++++|..|..+...+
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 43110 2367899999999999999999999999988887655442 3688999999999999999999999888877
Q ss_pred HHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
.+.++. ....+.+++.+.+.+.+.+|.+|.+++.++..+.+..+.+. +.+.++|.+++.|.|++..|+..++..+
T Consensus 391 ~~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l 465 (588)
T 1b3u_A 391 NEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNL 465 (588)
T ss_dssp HHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 765432 11135788888888999999999999999999998877653 4568999999999999999999999999
Q ss_pred HHHhh---ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChH----HHHHHHHHhhcccCChHHHHHHHHHHH
Q 005975 345 ACIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE----RVYRELSTILEGEADLDFACTMVQALN 417 (666)
Q Consensus 345 a~Is~---~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E----~Iy~~la~iL~~~~dl~F~~~mVq~Ln 417 (666)
+.++. ++.++..++..|.+++.+........+-..+..++..++.+ .++..+...+. +.+.+.-...+.+|.
T Consensus 466 ~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 466 KKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG-DPVANVRFNVAKSLQ 544 (588)
T ss_dssp HHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-CSCHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC-CCCchHHHHHHHHHH
Confidence 99884 23355677777777665544433333344666676666654 23333433332 233333335556665
Q ss_pred HHh
Q 005975 418 LIL 420 (666)
Q Consensus 418 ~iL 420 (666)
.+.
T Consensus 545 ~l~ 547 (588)
T 1b3u_A 545 KIG 547 (588)
T ss_dssp HHG
T ss_pred HHH
Confidence 554
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.89 E-value=2.2e-21 Score=217.18 Aligned_cols=309 Identities=18% Similarity=0.213 Sum_probs=258.0
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.+.+.++|.+...+.|++++||+.|++++..++.....+. +.+++++.+.+++.|+++.||.+| ..|.++++.+..+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 3456788889999999999999999999999987654432 356789999999999999999988 7888887754432
Q ss_pred cc-cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 107 SD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 107 ~~-~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
.. ...++.++|.+.+.+.+.+|.+|..++.++..+....+.+. ..+.+++.+..++.|++++||.++.++++.+.+.
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 11 13478899999999999999999999999988876544433 3677888888999999999999999999999986
Q ss_pred hhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Q 005975 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (666)
Q Consensus 186 I~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (666)
++.. ...+.++|.+...+.+++..+|..++.++..+....+..+ +.+.++|.++..+.|++.++|..|..+...+.
T Consensus 394 ~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 394 IGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp SCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 6321 1246789999999999999999999999999988766553 45889999999999999999999999999888
Q ss_pred HhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005975 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (666)
Q Consensus 266 ~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa 345 (666)
+..+. .+.++.+++.+...+.++++.+|.+++.+++.+.+.++.+. +.+.++|.+++.+.|++++|+..++++|+
T Consensus 470 ~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 470 EKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp HHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 77653 12246888888888888999999999999999999887653 78899999999999999999999999999
Q ss_pred HHhh
Q 005975 346 CIAK 349 (666)
Q Consensus 346 ~Is~ 349 (666)
.++.
T Consensus 545 ~l~~ 548 (588)
T 1b3u_A 545 KIGP 548 (588)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 9995
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.88 E-value=2.2e-20 Score=218.88 Aligned_cols=376 Identities=12% Similarity=0.096 Sum_probs=295.2
Q ss_pred hhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh--hhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHH
Q 005975 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV 100 (666)
Q Consensus 24 ~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i--l~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLl 100 (666)
..+.+|++.++|.++..+.|+++.||..|+.++.++++.....+ ..+++.+++.|.+.+.|. +.||.+| .++..++
T Consensus 403 ~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999988766543 468899999999999887 8898888 7888888
Q ss_pred HHhhc---ccccccHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC---------
Q 005975 101 KDIVT---ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD--------- 166 (666)
Q Consensus 101 KDIv~---e~~~f~L~~fIPlL~eri~~--~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD--------- 166 (666)
+.... +.-...++.++|.|...+.. .++.+|..+++.+..+....+.+..+|++.+++.+++.+.+
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 86541 11123468888888888874 44899999999999998877778888999988888877653
Q ss_pred ------CChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchHhHH
Q 005975 167 ------SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADIL 239 (666)
Q Consensus 167 ------~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~-~irl~Al~WL~~~i~l~~~~l~pylp~lL 239 (666)
...++|..+..+|..+++.++.......+.+++.++..+.+.+. .+|..++.++..++...+..+.||++.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35678999999999999988764344578899999998888776 88999999999999998999999999999
Q ss_pred HHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhChHHHhhh
Q 005975 240 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHF 317 (666)
Q Consensus 240 ~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~--~~tR~aaL~WL~~L~~~~p~~i~~~ 317 (666)
|.++..+.++++++|..|..+.+.+.+.+++ .-...++.+++.+.+.+.+++ ..+|.+++.+++.++..+++.+.+|
T Consensus 642 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 720 (861)
T 2bpt_A 642 PYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhch-hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999988999999999998888877653 111124678888888887654 7899999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHhhc----cchHHHH----HHHHHhhcccc----chhhhh
Q 005975 318 LNDIFDTLLKALSDPS-----------DEVVLLVLEVHACIAKD----LQHFRQL----VVFLVHNFRVD----NSLLEK 374 (666)
Q Consensus 318 l~~l~p~LL~~LsD~s-----------~eVv~~~l~lLa~Is~~----~~~F~~f----m~~LL~lf~~d----~~lLe~ 374 (666)
++.++|.+++.+.... ..|+..+++++..|... ...|.++ +..|.+...+. ...+..
T Consensus 721 l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~ 800 (861)
T 2bpt_A 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHH
Confidence 9999999999987432 35778888888888731 1345444 44444444331 344455
Q ss_pred HHHHHHHHHhccC-ChH-------HHHHHHHHhhc
Q 005975 375 RGALIIRRLCVLL-DAE-------RVYRELSTILE 401 (666)
Q Consensus 375 Rg~~IIR~Lc~~L-~~E-------~Iy~~la~iL~ 401 (666)
.+.-.+..||..+ +++ .++..|-..+.
T Consensus 801 ~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 801 AAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 5555788888877 543 44555555444
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.88 E-value=2.8e-19 Score=209.44 Aligned_cols=393 Identities=11% Similarity=0.145 Sum_probs=294.8
Q ss_pred hhHHHhhh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-----------------chhhhhHHHHHHHHHHhhcC-
Q 005975 24 FYSETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-----------------GDFIIFFNQIFDALCKLSAD- 84 (666)
Q Consensus 24 ~~~~~yl~-~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r-----------------~~il~~f~eIfd~L~kl~~D- 84 (666)
..+.+|+. .+++.++.++.|.+.+||..|++.+..+++... .....++..+++.++..+.+
T Consensus 257 ~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 257 TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ 336 (861)
T ss_dssp GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788 899999999999999999999999999987532 12235668899999877764
Q ss_pred ------CchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHH
Q 005975 85 ------SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDF 156 (666)
Q Consensus 85 ------~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li~yLp~f 156 (666)
.+.++|.+| .+|+.+..... ...++.++|.+.+.+.+.+|.+|..++..+..+....+ ..+.+|++.+
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~i 412 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA 412 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred ccccccccCcHHHHHHHHHHHHHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345788877 78888777544 23478899999999999999999999999999987765 6678999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----cc
Q 005975 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG----DQ 230 (666)
Q Consensus 157 L~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~--~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~----~~ 230 (666)
++.|++.+.|+++.||.+++.+++++...++.. +...++.+++.++..+.+. +.+|..|+..+..+++..+ ..
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence 999999999999999999999999999888643 2456899999999999876 8899999999998888654 67
Q ss_pred cccchHhHHHHHhhhhc--CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC---------------CcH
Q 005975 231 LVPYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS---------------EWE 293 (666)
Q Consensus 231 l~pylp~lL~~LL~~Ls--d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~---------------~~~ 293 (666)
+.||++.+++.+++.+. +.++++|..|.++.+.+.+..++. ....+..+++.+.+.+.+ ...
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 88999999999999998 445889999999998888765431 111134555555444431 234
Q ss_pred HHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhc-----cchHHHHHHHHHhhccc
Q 005975 294 ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAKD-----LQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 294 ~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~-eVv~~~l~lLa~Is~~-----~~~F~~fm~~LL~lf~~ 367 (666)
.+|..++..+..+....+..+.+|.+.++|.++..+++.+. .|+..+++.++.++.. .+|+..++..+++.+.+
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 650 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ 650 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999998877 8999999988888731 35777888888888754
Q ss_pred cchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhccc-CChHHHHHHHHHHHHHhcc
Q 005975 368 DNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-ADLDFACTMVQALNLILLT 422 (666)
Q Consensus 368 d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~~~-~dl~F~~~mVq~Ln~iLLT 422 (666)
+..-....+--.+-.++..++. +.+...+...+.+. .|.+.-......+..+..+
T Consensus 651 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 651 VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 4332222222345555555543 12333333333332 1233434455555444443
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.88 E-value=1.7e-20 Score=203.58 Aligned_cols=331 Identities=12% Similarity=0.038 Sum_probs=265.0
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC--chhHHHHH-HHHHHHHHHhhc
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~--d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
..+.|...++..+.+++..+ ..++.++..|++..... ..|+++++.|...+.|+ ++.+|.+| ..|..++++...
T Consensus 87 ~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~ 163 (462)
T 1ibr_B 87 ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163 (462)
T ss_dssp HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 34567788899999999999 99999999998753221 36889999999999888 89999999 888888887633
Q ss_pred ccccccHhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005975 106 ESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~--np~vR~~alswL~~L~svp~~~Li~--yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~ 181 (666)
+.-...++.++|.+...+.+. ++.+|..++..+..+...-+.++-. +.+.+++.|...+.|++.+||..++.+|..
T Consensus 164 ~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 322334678999999999987 7999999999998765433322211 223357788888999999999999999999
Q ss_pred HHHHhhcCCCCCHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---------------------CcccccchHhHH
Q 005975 182 FLQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADIL 239 (666)
Q Consensus 182 fL~eI~~~~~~d~~-~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~---------------------~~~l~pylp~lL 239 (666)
+...........++ .+++.++..+.+.++.+|..|++.+..+++.. ...+.+|++.++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (462)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence 99877554445677 99999999999999999999999777776642 111235679999
Q ss_pred HHHhhhhcCC-------cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-
Q 005975 240 GAILPCISDK-------EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR- 311 (666)
Q Consensus 240 ~~LL~~Lsd~-------~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p- 311 (666)
|.++..|.+. +..+|..|..+...+....++ .-++.+++.+.+.+.+++|..|.+|+..++.+.+++.
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 9999988643 246999999999888877652 2247888999999999999999999999999999886
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhcc
Q 005975 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~ 366 (666)
+.+.++++.++|.+++.|.|+++.||..++|+++++++ ..+|+.+++..|++.++
T Consensus 400 ~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999993 24789999999987663
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.87 E-value=9.6e-19 Score=205.35 Aligned_cols=339 Identities=14% Similarity=0.107 Sum_probs=267.0
Q ss_pred hhHHHhhh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---------------------chhhhhHHHHHHHHHHh
Q 005975 24 FYSETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------------------GDFIIFFNQIFDALCKL 81 (666)
Q Consensus 24 ~~~~~yl~-~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r---------------------~~il~~f~eIfd~L~kl 81 (666)
..+.+|+. .+++.++.++.|.+..||..|++.+.++++... +....+..++++.+++.
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 34567888 999999999999999999999999999986531 11123557888888877
Q ss_pred hc-------CCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhc
Q 005975 82 SA-------DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGF 152 (666)
Q Consensus 82 ~~-------D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li~y 152 (666)
+. |.+.++|.+| .+|+.+.+... ..-++.++|.+.+.+.+.+|.+|..++.++..+....+ ..+.+|
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 405 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCc----HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 64 3456899888 78888776554 23478899999999999999999999999999987665 557789
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--
Q 005975 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-- 228 (666)
Q Consensus 153 Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~--~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~-- 228 (666)
++.+++.|++.+.|+++.||..|+.+++.+.+.+... ....++.+++.++..+.++ +.+|..|+..+..++...+
T Consensus 406 ~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~ 484 (876)
T 1qgr_A 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEA 484 (876)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999987643 2346899999999999885 8899999999998887643
Q ss_pred ------------cccccchHhHHHHHhhhhcCC---cHHHHHHHHHHHHHHHHhhCC-----------------------
Q 005975 229 ------------DQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKAD----------------------- 270 (666)
Q Consensus 229 ------------~~l~pylp~lL~~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~----------------------- 270 (666)
..+.||++.++|.+++.+.+. +..+|..+.++.+.+.+.++.
T Consensus 485 ~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (876)
T 1qgr_A 485 ADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM 564 (876)
T ss_dssp TSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999865 346776666555444332211
Q ss_pred ------------------------------CC-C--CCChHhHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhChHHHh
Q 005975 271 ------------------------------PA-D--GFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVL 315 (666)
Q Consensus 271 ------------------------------~~-~--~~dl~~il~~L~~~L~~~~--~~tR~aaL~WL~~L~~~~p~~i~ 315 (666)
.+ . ...++.+++.+...+.+.. +.+|..++.++..++...+..+.
T Consensus 565 ~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 644 (876)
T 1qgr_A 565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644 (876)
T ss_dssp TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH
Confidence 00 0 0123556677777776654 46899999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHhhccc
Q 005975 316 HFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKD-----LQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 316 ~~l~~l~p~LL~~LsD~-s~eVv~~~l~lLa~Is~~-----~~~F~~fm~~LL~lf~~ 367 (666)
+|++.++|.+++.|.|. ++.|+..++++++.++.. .+|...+|..+++.+.+
T Consensus 645 ~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC
Confidence 99999999999999997 899999999999998831 35677888888888865
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.86 E-value=4.9e-19 Score=217.31 Aligned_cols=402 Identities=14% Similarity=0.113 Sum_probs=312.8
Q ss_pred hhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC---------------
Q 005975 20 ADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD--------------- 84 (666)
Q Consensus 20 ~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D--------------- 84 (666)
...|..+.+|++.++|.++..+.|+++.||.+|.+++..+++.++.++.+|++++++.+++.+.+
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 34567778999999999999999999999999999999999988888889999999999876631
Q ss_pred ----------------------CchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005975 85 ----------------------SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL 141 (666)
Q Consensus 85 ----------------------~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L 141 (666)
....||.+| .+++.++.. ..+.-...++.++|.+.+++.+.++.+|..+++++..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST-RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTT-CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 012467777 677776652 11111233788899999999999999999999988866
Q ss_pred hcCC-------------------chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005975 142 DSVP-------------------DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILV 202 (666)
Q Consensus 142 ~svp-------------------~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl 202 (666)
.... ...+..++|.+++.+.+.+.|++..||.+++.+|+.+++..+......++.+++.++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~ 481 (1230)
T 1u6g_C 402 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGII 481 (1230)
T ss_dssp HHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHH
T ss_pred HHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHH
Confidence 5421 134567999999999999999999999999999999998865433346899999999
Q ss_pred HhcCCCC--HHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC----CCC-
Q 005975 203 QRAASPD--EFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP----ADG- 274 (666)
Q Consensus 203 ~~~~s~d--~~irl~Al~WL~~~i~l-~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~----~~~- 274 (666)
..+.++. ..+|..++.++..++.. ++..+.||++.++|.++.++.|....+|..|..+...+.+.++.. +..
T Consensus 482 ~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 561 (1230)
T 1u6g_C 482 FSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA 561 (1230)
T ss_dssp HHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 9999876 48999999999988874 555699999999999999999999999988888888888776541 111
Q ss_pred -CChHhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-
Q 005975 275 -FDVGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD- 350 (666)
Q Consensus 275 -~dl~~il~~L~~~L--~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~- 350 (666)
..++.+++.+...+ .+.+..+|.+|+..++.++...++.+.++++.+++.|.+.+.++. .+..+++.++.|+..
T Consensus 562 ~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~~~~~al~~i~~~~ 639 (1230)
T 1u6g_C 562 TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSP 639 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHhCc
Confidence 12478888888888 677889999999999999999999999999999999999998765 566788888888742
Q ss_pred -----cchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC----hHHHHHHHHHhhcc--cCChHHHHHHHHHHHHH
Q 005975 351 -----LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD----AERVYRELSTILEG--EADLDFACTMVQALNLI 419 (666)
Q Consensus 351 -----~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~----~E~Iy~~la~iL~~--~~dl~F~~~mVq~Ln~i 419 (666)
+.++..++..|...+.++...+..-..-.+..++...+ .+.+-..+..++.- ++|......+.+.|..+
T Consensus 640 ~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l 719 (1230)
T 1u6g_C 640 LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 719 (1230)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Confidence 45677788888887766544333333334555555543 35555555444332 67888888888888887
Q ss_pred hccch
Q 005975 420 LLTSS 424 (666)
Q Consensus 420 LLTs~ 424 (666)
+-+.+
T Consensus 720 ~~~~~ 724 (1230)
T 1u6g_C 720 AKVYP 724 (1230)
T ss_dssp TTSCG
T ss_pred HHhCc
Confidence 75444
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.85 E-value=1.1e-19 Score=223.10 Aligned_cols=393 Identities=13% Similarity=0.156 Sum_probs=304.0
Q ss_pred HHHhhhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHh
Q 005975 26 SETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D-~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDI 103 (666)
...|.+.++|.++.++.| +++++|.+|++++.++++.....+.+|.+++++.|...+.|+++.||.+| .++..++...
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 456899999999999995 89999999999999998876666778999999999999999999999998 6777665422
Q ss_pred hcccccccHhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 104 VTESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 104 v~e~~~f~L~~fIPlL~eri~~~-np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
- ..+ ++.++|.+.+.+... ++.+|..++.++..+....+..+.+|++++++.+++.+.|.+++||..|..+++.+
T Consensus 207 ~---~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l 282 (1230)
T 1u6g_C 207 G---NIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF 282 (1230)
T ss_dssp --------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHH
T ss_pred C---HHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 122 567788888888654 35788888999988877666688999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcCCC-------------------------------------CHHHHHHHHHHHHHHHH
Q 005975 183 LQEIKNSPSVDYGRMAEILVQRAASP-------------------------------------DEFTRLTAITWINEFVK 225 (666)
Q Consensus 183 L~eI~~~~~~d~~~iI~iLl~~~~s~-------------------------------------d~~irl~Al~WL~~~i~ 225 (666)
.+..+......++.+++.++..+... ...+|..|+..+..++.
T Consensus 283 ~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 283 VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 98664432235678888887766420 01358889999999998
Q ss_pred hcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCC------------------CCChHhHHHHHHHh
Q 005975 226 LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD------------------GFDVGPILSIATRQ 287 (666)
Q Consensus 226 l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~------------------~~dl~~il~~L~~~ 287 (666)
..+..+.+|+++++|.+...+.|.++++|..|.++...+.+....... ...++.+++.+.+.
T Consensus 363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~ 442 (1230)
T 1u6g_C 363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442 (1230)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH
Confidence 877788999999999999999999999999999998888776543100 01135777888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhh--cc----chHHHHHH
Q 005975 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD--EVVLLVLEVHACIAK--DL----QHFRQLVV 359 (666)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~--eVv~~~l~lLa~Is~--~~----~~F~~fm~ 359 (666)
+.++++.+|.+++..+..+...+++.+.+|++.++|.+++.|.|+.+ +|+..++..++.+.+ +. +||..++.
T Consensus 443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp 522 (1230)
T 1u6g_C 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522 (1230)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 888888888887763 22 36777888
Q ss_pred HHHhhccccchhhhhHHHHHHHHHhccCCh-------------HHHHHHHHHhhcc-cCChHHHHHHHHHHHHHhcc
Q 005975 360 FLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------------ERVYRELSTILEG-EADLDFACTMVQALNLILLT 422 (666)
Q Consensus 360 ~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~-------------E~Iy~~la~iL~~-~~dl~F~~~mVq~Ln~iLLT 422 (666)
.|+..+.+........+--.+..++..+++ +.++..+-..+.. +.|.+.-+..+..|..+.-.
T Consensus 523 ~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 888777554332211122256666654443 4677777777742 35555655666666666544
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.85 E-value=1.6e-18 Score=203.48 Aligned_cols=351 Identities=11% Similarity=0.040 Sum_probs=274.8
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC--chhHHHHH-HHHHHHHHHhh
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~--d~~Vr~gA-~~LdrLlKDIv 104 (666)
.....|.+.++.++.++++.+ ..++.++..|++... ...+|+++++.|...+.|+ ++++|.+| .+|..+++++.
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (876)
T 1qgr_A 86 NARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (876)
T ss_dssp HHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC--cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 345567777999999999999 899999988886421 1256899999999999888 89999999 88888887653
Q ss_pred cccccccHhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~--np~vR~~alswL~~L~svp~~~Li~--yLp~fL~gLf~lLsD~~~eVR~~A~~~L~ 180 (666)
.+.-...++.++|.+.+.+.+. ++.+|..++..+..+...-+.++.. ..+.+++.++..+.|.+.+||..|+++|.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2211334788899999999886 7899999999998776543322221 12347888888899999999999999999
Q ss_pred HHHHHhhcCCCCCHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---------------------CcccccchHhH
Q 005975 181 EFLQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADI 238 (666)
Q Consensus 181 ~fL~eI~~~~~~d~~-~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~---------------------~~~l~pylp~l 238 (666)
.+++.........+. .+++.++..+.+.++.+|..|++.+..+++.. .....++++.+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (876)
T 1qgr_A 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322 (876)
T ss_dssp HHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHH
Confidence 999865443223456 89999999999999999999998666665531 01123456889
Q ss_pred HHHHhhhhcC-------CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh
Q 005975 239 LGAILPCISD-------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 311 (666)
Q Consensus 239 L~~LL~~Lsd-------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p 311 (666)
+|.++..|.. .+.++|..|..+...+.....+ .-++.+++.+...+.+++|.+|.+|+..++.+.++++
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC
Confidence 9999998863 3457999999998888776653 1267888999999999999999999999999999886
Q ss_pred -HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 005975 312 -TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL 383 (666)
Q Consensus 312 -~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~L 383 (666)
+.+.+|+++++|.+++.|+|+++.|+..++++++++++ ...|+..++..|++.+.++ .....+....+.++
T Consensus 399 ~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l 477 (876)
T 1qgr_A 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999994 2478999999999999765 44455545556666
Q ss_pred hcc
Q 005975 384 CVL 386 (666)
Q Consensus 384 c~~ 386 (666)
|..
T Consensus 478 ~~~ 480 (876)
T 1qgr_A 478 AEA 480 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.73 E-value=1.7e-15 Score=164.06 Aligned_cols=342 Identities=12% Similarity=0.113 Sum_probs=257.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc-----------chh-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccccc
Q 005975 42 SDQDSRVRYYACEALYNIAKVVR-----------GDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQ 109 (666)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~Kv~r-----------~~i-l~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~ 109 (666)
.+.+..+|..|+..+.|.++... ..+ -.....|-+.|+..+.+.++.|+.+|.++..+.+....+
T Consensus 47 ~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~--- 123 (462)
T 1ibr_B 47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV--- 123 (462)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG---
T ss_pred CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccc---
Confidence 34589999999999999874210 000 112345666677777777776644447777776643221
Q ss_pred ccHhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHH
Q 005975 110 FSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQ 184 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~--np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lLsD~--~~eVR~~A~~~L~~fL~ 184 (666)
..-+.++|.|.+.+.+. ++.+|..++.++..+.. ..+..+..|++.+++.+.+.+.|+ +++||.+|.+++..++.
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 13578999999999998 99999999999998876 434557789999999999999998 79999999999998764
Q ss_pred HhhcCCCCC-H-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH-hHHHHHhhhhcCCcHHHHHHHHHHH
Q 005975 185 EIKNSPSVD-Y-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA-DILGAILPCISDKEEKIRVVARETN 261 (666)
Q Consensus 185 eI~~~~~~d-~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp-~lL~~LL~~Lsd~~~eIR~~A~~~n 261 (666)
.+......+ + +.+++.+.....++++.+|..++..+..+....+..+.+|++ .+++.++.++.+.++++|..|.+..
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 332111111 1 346888888888899999999999999999999988999999 9999999999999999999988876
Q ss_pred HHHHHhh-------CC------C--CCCCC-----hHhHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhChHHH
Q 005975 262 EELRAIK-------AD------P--ADGFD-----VGPILSIATRQLS-------SEWEATRIEALHWISTLLNRHRTEV 314 (666)
Q Consensus 262 ~~L~~~i-------~~------~--~~~~d-----l~~il~~L~~~L~-------~~~~~tR~aaL~WL~~L~~~~p~~i 314 (666)
..+.+.. .+ + ..... +..+++.+.+.+. +++|..|.+|..-+..+...+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-- 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--
Confidence 6654432 11 0 01112 2567787777774 23577899999999999999985
Q ss_pred hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc------chHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC
Q 005975 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL------QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (666)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~------~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~ 388 (666)
..++.++|.+...|.|++..++..++..++.++++. .+...++..++..+.+....+..++...+.++|..++
T Consensus 362 -~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 362 -DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp -THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 455688999999999999999999999999999532 3556788888888877777667666666666666554
Q ss_pred h
Q 005975 389 A 389 (666)
Q Consensus 389 ~ 389 (666)
+
T Consensus 441 ~ 441 (462)
T 1ibr_B 441 E 441 (462)
T ss_dssp G
T ss_pred c
Confidence 3
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.71 E-value=6.3e-15 Score=168.21 Aligned_cols=347 Identities=14% Similarity=0.134 Sum_probs=242.3
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
...+.++|++.+++.|+++.||+.|+.+++++.+...+ ..+. +.+++.|.+++.|+++.|+.+| .+|..++++-...
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 45677889999999999999999999999999874433 3222 4678999999999999999998 6666654421100
Q ss_pred ccccc-HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 107 SDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 107 ~~~f~-L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
..+. ....++.|...+.+.+|..+..++.++..+....+. ....+++.+..++.++++.|+-+|+.++..+...
T Consensus 195 -~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 195 -NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp -CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred -cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 0122 234566677777788999999999988766543322 3467788888899999999999999988777543
Q ss_pred hhcCCCC-C--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 186 IKNSPSV-D--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 186 I~~~~~~-d--~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
+...+.. . .+.+.+.|+.. .++++.+|..|+.++..++...+..+.+++..+ + |+.+.+..||..|.+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L- 342 (591)
T 2vgl_B 270 LPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIM- 342 (591)
T ss_dssp CCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHH-
Confidence 3111111 1 24566666644 458999999999999999998888777766543 2 44444488998876543
Q ss_pred HHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 005975 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (666)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~ 342 (666)
.+.+. .-+++.+++.|.+.+.+.+++.|..++.+++.++.+++.. .+..++.|++.++|+.+.|+..+..
T Consensus 343 --~~l~~----~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 343 --IRLAS----QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp --HHTCC----SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred --HHHCC----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccchHHHHHHHH
Confidence 33332 2357889999999999999999999999999999998744 4567788888889999999998888
Q ss_pred HHHHHhh-ccchHHHHHHHHHhhcccc-chhhhhHHHHHHHHHhccC-ChHHHHHHHHH
Q 005975 343 VHACIAK-DLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLL-DAERVYRELST 398 (666)
Q Consensus 343 lLa~Is~-~~~~F~~fm~~LL~lf~~d-~~lLe~Rg~~IIR~Lc~~L-~~E~Iy~~la~ 398 (666)
.+..|.. +.......+..|.+.+.+. ........-.++-+.|..+ +++.+.+.+.+
T Consensus 413 ~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~ 471 (591)
T 2vgl_B 413 VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLE 471 (591)
T ss_dssp HHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHST
T ss_pred HHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHH
Confidence 8888763 2333344556666666433 2222222233444444444 34444444443
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=1.6e-15 Score=164.26 Aligned_cols=351 Identities=11% Similarity=0.058 Sum_probs=249.3
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHH--HHHHHHHHhhcCC-chhHHHHH-HHHHHHHHHhhccc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFN--QIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~--eIfd~L~kl~~D~-d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
.++.++..+.++|+.+|..|+.++.++...... .+-..+. .+++.|.+++.+. ++.||..| .+|..++..-....
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 478899999999999999999999887642221 2222222 5788888888877 78888777 77777654111000
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHH
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~ 184 (666)
...--...+|.|.+.+.+.++.+|..++..+..+...... ....+ ...++.|.+++.+ ++.+||..|..+|..+..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM-CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 1111245899999999999999999999999988765432 11111 3567788888985 799999999999999885
Q ss_pred Hh-hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 185 EI-KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 185 eI-~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p-ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
.- +.....-...+++.|+..+.+.|+.++..|+.-+..+....++.... .-.+++|.++..+.++++++|..|..+..
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 32 11111124789999999999999999998888887766532211110 12457888889999999999999988877
Q ss_pred HHHHhhCCCCC-CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHH
Q 005975 263 ELRAIKADPAD-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 263 ~L~~~i~~~~~-~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
.+.....+... -.+ ..+++.|...+.++++.+|.+|+..|..+..++++...... .+++|.|+..|.|++++|+..+
T Consensus 260 ~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 260 NIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 65421000000 000 25788899999999999999999999999998887776666 3799999999999999999999
Q ss_pred HHHHHHHhhc--cchHH-----HHHHHHHhhccccchhhhhHHHHHHHHHhc
Q 005975 341 LEVHACIAKD--LQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (666)
Q Consensus 341 l~lLa~Is~~--~~~F~-----~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~ 385 (666)
+|+|+.++.+ ....+ .++..|++++.+...-+...+-..+.+++.
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999853 22222 267778888876555445454455666655
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.69 E-value=2e-15 Score=163.58 Aligned_cols=318 Identities=16% Similarity=0.055 Sum_probs=230.6
Q ss_pred hhHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc
Q 005975 32 QIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (666)
Q Consensus 32 ~Il~pVL~~~~D~-d~rVR~~A~eaL~nI~Kv~r~~il~-~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~ 108 (666)
.++|.++..+.+. ++.+|..|+.++.+++......... .-..+++.|.+++.++++.||..| .+|..+..+-.....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999998 8999999999999997532111111 124678999999999999999988 777777653211101
Q ss_pred cccHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC--chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVP--DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp--~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
..--...+|.|.+.+.+ .++.+|..++..+..+..-. ... ......+++.|.+++.+.+++||..|+.+|..+...
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 11113578999999985 79999999999999998543 222 233478899999999999999999999999888642
Q ss_pred hhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCcHHHHHHHHHHHHH
Q 005975 186 IKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEE 263 (666)
Q Consensus 186 I~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py-lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~ 263 (666)
-... ..+--..+++.|+..+.++++.+|..|+.-+..+..-.+...... -.+++|.+++.+.++++.+|..|..+...
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1000 000013578899999999999999999998887765433211111 13688999999999999999999888766
Q ss_pred HHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChHHHhhhhH-HHHHHHHHhcCCCCHHHHHHHH
Q 005975 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVL 341 (666)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~i~~~l~-~l~p~LL~~LsD~s~eVv~~~l 341 (666)
+.....+....+--..+++.|...+.+++..+|..|...+..+... .++.+....+ +++|.|+..|.+++++|+..++
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 382 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 5421000000000025677788888888899999999999999987 5555544443 6999999999999999999999
Q ss_pred HHHHHHhhc
Q 005975 342 EVHACIAKD 350 (666)
Q Consensus 342 ~lLa~Is~~ 350 (666)
+.|..++..
T Consensus 383 ~aL~~l~~~ 391 (450)
T 2jdq_A 383 NGLENILRL 391 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998853
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=5.4e-15 Score=149.13 Aligned_cols=193 Identities=11% Similarity=0.116 Sum_probs=160.9
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhhccc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
+..+.+.+...++|+++++|+.|.+++..+++.+.+.....+.++++.|.+++. |++..|+.+| .++..+++.+
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l---- 88 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL---- 88 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH----
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH----
Confidence 345556788899999999999999999999886433222345788888888885 8888888888 6666655421
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
+.++..|.+.+++.|+..++|+++.||.+|..+|..+...
T Consensus 89 --------------------------------------~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-- 128 (242)
T 2qk2_A 89 --------------------------------------AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-- 128 (242)
T ss_dssp --------------------------------------GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred --------------------------------------hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--
Confidence 2356789999999999999999999999999999998752
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-Cc-ccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHH
Q 005975 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (666)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~-~~-~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (666)
..++.+++.+...+.++++.+|..++.||..++... +. .+.+|++.++|.+.+++.|+++++|..|.++...+.
T Consensus 129 ----~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 129 ----TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp ----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999977764 33 468999999999999999999999999999999998
Q ss_pred HhhCC
Q 005975 266 AIKAD 270 (666)
Q Consensus 266 ~~i~~ 270 (666)
..+++
T Consensus 205 ~~vg~ 209 (242)
T 2qk2_A 205 KLMGD 209 (242)
T ss_dssp HHHCH
T ss_pred HHcCH
Confidence 88763
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.65 E-value=3.5e-15 Score=167.05 Aligned_cols=356 Identities=11% Similarity=0.043 Sum_probs=249.8
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcch-hhh-hHHHHHHHHHHhhcCC-chhHHHHH-HHHHHHHHHhhc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FII-FFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~-il~-~f~eIfd~L~kl~~D~-d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
+...++.++..+.+.|+.+|..|+.++.++....... +.. .-..+++.|..++.++ ++.|+..| .+|..++.+-..
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 5567899999999999999999999998885321111 111 1135788899999887 78888777 677766542110
Q ss_pred ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
.....--...+|.|.+.+.+.++.+|..++..+..+..-.+.. -...-...++.|.+++.|++.+||..|+.+|..+..
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 0011112456888888888899999999999999987653211 111123678888999999999999999999999885
Q ss_pred Hh-hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch-HhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 185 EI-KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 185 eI-~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pyl-p~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
.- +.........+++.|+..+.++++.++..|+.-+..+....+......+ .+++|.++..+.++++++|..|..+..
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 22 1111112467899999999999999999999988887754433222222 377899999999999999999988876
Q ss_pred HHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHH
Q 005975 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVL 341 (666)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l 341 (666)
.+...-.+....+--..+++.|...+.++++.+|..|+..|..+..+.++.+...+ .+++|.|+..|.+++++|+..++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 65421000000000025788899999999999999999999999988887766655 47899999999999999999999
Q ss_pred HHHHHHhhc--c--chHHH-----HHHHHHhhccccchhhhhHHHHHHHHHhc
Q 005975 342 EVHACIAKD--L--QHFRQ-----LVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (666)
Q Consensus 342 ~lLa~Is~~--~--~~F~~-----fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~ 385 (666)
|+|+.++.+ . .+.+. .+..|+.++.++..-+...+-..+.+++.
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 999999853 2 23222 56677777765544444444445555554
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.65 E-value=1.9e-15 Score=169.22 Aligned_cols=319 Identities=16% Similarity=0.090 Sum_probs=228.5
Q ss_pred hhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc
Q 005975 31 QQIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 31 ~~Il~pVL~~~~D~-d~rVR~~A~eaL~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
..++|.++.++.++ ++.+|+.|+.+|.+++........ ..-..+++.|.+++.++++.||..| .+|..++.+-....
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 35889999999998 899999999999999753211110 0113567888888888899999988 77777765311101
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp-~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
...--...+|.|.+.+.+.++.+|..++..+..+..-. +..-......+++.|.+++.+++++||..|+.+|..+...-
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 11112357999999999999999999999999998543 21123345788999999999999999999999999887421
Q ss_pred hcCC-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 187 KNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 187 ~~~~-~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py-lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
.... .+--..+++.|+..+.++++.+|..|+.-+..+..-.+.....+ -.+++|.++..|.++++++|..|..+...+
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0000 00012578999999999999999999998887765332211111 247889999999999999999998887765
Q ss_pred HHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH--HHhhhh--HHHHHHHHHhcCCCCHHHHHHH
Q 005975 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT--EVLHFL--NDIFDTLLKALSDPSDEVVLLV 340 (666)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~--~i~~~l--~~l~p~LL~~LsD~s~eVv~~~ 340 (666)
.....+....+--..+++.|...+.+.+..+|..|+..|..+...... +...++ .+++|.|+..|.+++++|+..+
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 421000000000024567777777778899999999999999887543 333332 2589999999999999999999
Q ss_pred HHHHHHHhh
Q 005975 341 LEVHACIAK 349 (666)
Q Consensus 341 l~lLa~Is~ 349 (666)
++.|..+..
T Consensus 449 l~aL~~l~~ 457 (530)
T 1wa5_B 449 LDALENILK 457 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999884
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.65 E-value=9.7e-15 Score=163.06 Aligned_cols=319 Identities=17% Similarity=0.104 Sum_probs=231.0
Q ss_pred hhhHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc
Q 005975 31 QQIVPPVLNSFSDQD-SRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d-~rVR~~A~eaL~nI~Kv~r~~il~~-f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
..++|.++..+.+++ +.+|..|+.+|.|++.......... -...++.|.+++.++++.|+..| .+|..++.+-....
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 358899999999987 9999999999999986321111111 12578899999999999999988 78888765321111
Q ss_pred ccccHhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 108 DQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri-~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
....-...+|.|.+.+ .+.++.+|..++..+..+....+..-.......++.|.+++.+++++|+..|+.+|..+...-
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 1111124788999999 678999999999999999875332233456888999999999999999999999998876311
Q ss_pred hcCC-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCC-cHHHHHHHHHHHHH
Q 005975 187 KNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDK-EEKIRVVARETNEE 263 (666)
Q Consensus 187 ~~~~-~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py-lp~lL~~LL~~Lsd~-~~eIR~~A~~~n~~ 263 (666)
.... .+--..+++.|+..+.++++.++..|+.-|..+..-.+...... -.+++|.++..|.++ ++.+|..|..+...
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 0000 00012478899999999999999999998887775332211111 256788889999888 89999999988776
Q ss_pred HHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHH
Q 005975 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVL 341 (666)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eVv~~~l 341 (666)
+...-.+....+--..+++.|...+.+.+..+|..|+..|..+......+...++ .+.++.|+..|.+++++|+..++
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 6531000000000025567777777777899999999999999988433444444 46899999999999999999999
Q ss_pred HHHHHHhh
Q 005975 342 EVHACIAK 349 (666)
Q Consensus 342 ~lLa~Is~ 349 (666)
+.|..|..
T Consensus 436 ~~L~~l~~ 443 (528)
T 4b8j_A 436 EGLENILK 443 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999984
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.62 E-value=8.3e-14 Score=158.97 Aligned_cols=349 Identities=16% Similarity=0.165 Sum_probs=244.9
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
....+.+++++.+++..+|+.+..++.++++...+.. ..+...+.+.+.|+++.+|..| ..|.++ . ..
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~---~~ 116 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCI----R---VD 116 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTC----C---SG
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----C---hH
Confidence 4456677789999999999999888888876422221 2345677788999999999888 333322 1 12
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
--.+.++|.+.+++.+.+|+||+.|+.++..+....+. .+.. +.+++.|..++.|+++.||.+|..+|.++...-...
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 23677889999999999999999999999988764332 2222 468899999999999999999988888765421110
Q ss_pred CCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 190 PSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 190 ~~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
...++ ...++.|+..+.+.++..+...+.++..+. +.. -+...++++.+++++.+.++.|+..|.++...+...+
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 01232 456777777777788999888888776433 211 1235688999999999999999998888765543222
Q ss_pred CCCCCCCC--hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 269 ADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 269 ~~~~~~~d--l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
...++.+. ++.+.+.|... .+++..+|..|+.++..+....|+.+.+|+..++ ++.+++..|+..++++|..
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-----~~~~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-----VKYNDPIYVKLEKLDIMIR 344 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-----CCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-----eccCChHHHHHHHHHHHHH
Confidence 11111111 13444555543 4577889999999999999999988888776542 3333349999999999999
Q ss_pred HhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhccc
Q 005975 347 IAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGE 403 (666)
Q Consensus 347 Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~~ 403 (666)
+++ +...+.++..|+....+...-.......-|.++|...++ +.+...+.+.+...
T Consensus 345 l~~-~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 345 LAS-QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK 402 (591)
T ss_dssp TCC-SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHccc
Confidence 984 456788899999887665443444444467777877643 56666666666544
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.61 E-value=7.3e-14 Score=155.96 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=229.1
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-chhh-hhHHHHHHHHHHhhcCCc-hhHHHHH-HHHHHHHHHhhcc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFI-IFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r-~~il-~~f~eIfd~L~kl~~D~d-~~Vr~gA-~~LdrLlKDIv~e 106 (666)
..-+|.++..+.++|+.+|..|+.++.+++.... .... ..-..+++.|.+++.+++ +.++..| .+|.++..+-...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3458999999999999999999999988865332 1111 112357888888888876 8888877 7777776521111
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhc-CCCChhHHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNML-SDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lL-sD~~~eVR~~A~~~L~~fL 183 (666)
....--...+|.|.+.+.+.++.+|..++..+..+..-.+. ....+ ...++.|++++ .+++++|+..|+.+|..+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11111125789999999999999999999999998754322 11111 14678888899 7789999999999999988
Q ss_pred HHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 184 ~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p-ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
..-+..........++.|+..+.++++.++..|+..+..+....+..... .-.+++|.++..|.+++++++..|..+..
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 53211111124678999999999999999999998888766433322111 12368899999999999999999988876
Q ss_pred HHHHhhCCCC-CCCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcCCCCHHHHHH
Q 005975 263 ELRAIKADPA-DGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLL 339 (666)
Q Consensus 263 ~L~~~i~~~~-~~~dl~~il~~L~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~s~eVv~~ 339 (666)
.+.....+.. .-++ ..+++.|...+.+. +..+|..|...|..+....++.+....+ +++|.|+..|.+.+++|+..
T Consensus 312 nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 312 NIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp HHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 6542100000 0000 35678888888887 8999999999999999877766655443 78999999999999999999
Q ss_pred HHHHHHHHhhc
Q 005975 340 VLEVHACIAKD 350 (666)
Q Consensus 340 ~l~lLa~Is~~ 350 (666)
++++|+.++.+
T Consensus 391 a~~aL~nl~~~ 401 (528)
T 4b8j_A 391 AAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999999953
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=2.4e-13 Score=156.10 Aligned_cols=368 Identities=15% Similarity=0.127 Sum_probs=247.1
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
....+.++++|.+++.|+++.||+.|+.+++++.+...+.+ ..+++.+.+++.|.++.|+.+| .+|..+++
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~---- 208 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCE---- 208 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH----
Confidence 45667889999999999999999999999999988654433 2457778888999999999988 56555432
Q ss_pred cccc--ccHhhhHHHHHHhhc---------------CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc---C
Q 005975 106 ESDQ--FSIEEFIPLLRERMN---------------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML---S 165 (666)
Q Consensus 106 e~~~--f~L~~fIPlL~eri~---------------~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL---s 165 (666)
.... .....++|.+.+.+. ..+|..+..++.++..+.... .+...-+.+++..+.+-. .
T Consensus 209 ~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 209 RSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSK 287 (618)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccccc
Confidence 2111 124566776666554 358999999999999887542 223333334444443321 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005975 166 DSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (666)
Q Consensus 166 D~~~eVR~~A~~~L~~fL~eI~~~~~~d-~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~ 244 (666)
..+..|.-.|.+++.. +.. ... ....++.|...+.++++.+|..|+.++..+....|..+.+| .+.++.
T Consensus 288 ~~~~aV~~ea~~~i~~----l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~ 357 (618)
T 1w63_A 288 NVGNAILYETVLTIMD----IKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVD 357 (618)
T ss_dssp THHHHHHHHHHHHHHH----SCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHH
T ss_pred chHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHH
Confidence 2345677666665543 211 111 23467888888999999999999999999998877655444 457788
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHH
Q 005975 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 324 (666)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~ 324 (666)
|+.|++.+||..|-++...+ +. .-+++.+++.+..++.+.+.+.|..++.|++.++.+++.....++ +.
T Consensus 358 ~l~d~d~~Ir~~alelL~~l---~~----~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v----~~ 426 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFAL---VN----GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHI----DT 426 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHH---CC----SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHH----HH
T ss_pred HccCCChhHHHHHHHHHHHH---cc----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHH----HH
Confidence 99999999999887765443 32 234688999999999888899999999999999999876665554 55
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhcccc---chhhhhHHHHHHHHHhccC-------------
Q 005975 325 LLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVD---NSLLEKRGALIIRRLCVLL------------- 387 (666)
Q Consensus 325 LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d---~~lLe~Rg~~IIR~Lc~~L------------- 387 (666)
+++.|++..+.|+..++..+.++.. +++.....+..|.+.+.++ ..+. ..+..|+-..|..+
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~ 505 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQV 505 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCC
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCC
Confidence 5566666666666656666666654 3344445677777777643 3333 34555777777543
Q ss_pred ChHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHhccchh
Q 005975 388 DAERVYRELSTILEG-EADLDFACTMVQALNLILLTSSE 425 (666)
Q Consensus 388 ~~E~Iy~~la~iL~~-~~dl~F~~~mVq~Ln~iLLTs~E 425 (666)
+++.+...+..++.. .++...-...+..+--+....|+
T Consensus 506 ~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~ 544 (618)
T 1w63_A 506 TEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 544 (618)
T ss_dssp CHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc
Confidence 345566666665543 34444444455555444554444
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=2.7e-14 Score=144.06 Aligned_cols=208 Identities=17% Similarity=0.220 Sum_probs=175.3
Q ss_pred hcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 005975 142 DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWI 220 (666)
Q Consensus 142 ~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~-s~d~~irl~Al~WL 220 (666)
+-+++.++...+| +.++..+.|.+-.+|++|...|..+++........++.++++.+...+. +++..+|..|+.-+
T Consensus 5 d~~~~~di~~~l~---~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l 81 (242)
T 2qk2_A 5 DLLDPVDILSKMP---KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCL 81 (242)
T ss_dssp HTTSCBCCGGGSC---TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhCCcccccccCC---HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3445566666555 4566788999999999999999999986433223468899999999995 99999999999999
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHH
Q 005975 221 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEAL 300 (666)
Q Consensus 221 ~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL 300 (666)
..++...+..+.+|.+.++|.++..+.|+.+.+|..|..+...+... ..++.+++.+...+.+.++.+|..++
T Consensus 82 ~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l 154 (242)
T 2qk2_A 82 ALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETA 154 (242)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHH
Confidence 99999888899999999999999999999999999999998887653 34789999999999999999999999
Q ss_pred HHHHHHHhhC-hH-HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHH
Q 005975 301 HWISTLLNRH-RT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVV 359 (666)
Q Consensus 301 ~WL~~L~~~~-p~-~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~~~~F~~fm~ 359 (666)
.|+..++..+ |+ .+.+|++.++|.+.+.|+|+.++||..+..+++.++. ++..|.+++.
T Consensus 155 ~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 155 LFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999988887 44 3578999999999999999999999999999999884 3334444443
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.7e-13 Score=140.07 Aligned_cols=216 Identities=13% Similarity=0.200 Sum_probs=184.2
Q ss_pred cCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHHhhcCC--CCCHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 005975 143 SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE-FLQEIKNSP--SVDYGRMAEILVQRA-ASPDEFTRLTAIT 218 (666)
Q Consensus 143 svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~-fL~eI~~~~--~~d~~~iI~iLl~~~-~s~d~~irl~Al~ 218 (666)
-+++.+++.-||. +...++.+++-.-|++|-..|.. +++..++.. ..++.+++..+...+ .+++..++..|+.
T Consensus 7 ~~~~~~i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~ 83 (249)
T 2qk1_A 7 MLPEETILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQ 83 (249)
T ss_dssp CCCCBCCGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcChhhhhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3456667777776 55667899999999999888888 775433322 457889999999999 7999999999999
Q ss_pred HHHHHHHhcC-cccc-cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005975 219 WINEFVKLGG-DQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (666)
Q Consensus 219 WL~~~i~l~~-~~l~-pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR 296 (666)
-+..+.+-.+ ..+. +|...++|.++..+.|..+.+|+.+..+...++..+.......+++.+++.|...+.+.++.+|
T Consensus 84 al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk 163 (249)
T 2qk1_A 84 SVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIR 163 (249)
T ss_dssp HHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHH
Confidence 9999998777 7898 9999999999999999999999999999999988764322112378999999999999999999
Q ss_pred HHHHHHHHHHHhhCh---HHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHH
Q 005975 297 IEALHWISTLLNRHR---TEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFL 361 (666)
Q Consensus 297 ~aaL~WL~~L~~~~p---~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~~~~F~~fm~~L 361 (666)
++++.||..++..++ ..+.+|+ +.++|.+.+.+.|++++||..+.++++.++. ++..|.+++..|
T Consensus 164 ~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999987 6788999 9999999999999999999999999999883 567788888886
No 25
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=6.3e-13 Score=136.07 Aligned_cols=255 Identities=14% Similarity=0.102 Sum_probs=195.9
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
..-++.++..+.|+++.||+.|+.+|.++.. ++.++.|.+++.|+++.||..| ..|..+ .. ..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~--~~ 85 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI----KI--CK 85 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS----CC--CT
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHh----cc--cc
Confidence 4567899999999999999999999887741 4678888999999999999988 555443 11 11
Q ss_pred ccHhhhHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 110 FSIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 110 f~L~~fIPlL~e-ri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
..++.++|.|.. ...+.++.+|..++..+..+.... -.+-+.+++.|.+++.|+++.||..|..+|+.+-.
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 235667777764 467899999999999998775322 13457788999999999999999999888876542
Q ss_pred CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
+..++.|+..+.++++.+|..|+..+..+ + ..-+..++.+...+.|+++++|..|..+.+.+-
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~-----~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININ---K-----YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHH---T-----CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh---c-----cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---
Confidence 34688888999999999999999988754 2 123688899999999999999999988775532
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 005975 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEVHAC 346 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD-~s~eVv~~~l~lLa~ 346 (666)
+ ...++.|...+.+++ +|..+...++.+.. +..+|.|.+.+.+ ++++++..+.+.|.+
T Consensus 221 -~-------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 221 -D-------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -C-------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -C-------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 1 467788888887754 78888888877643 2567888888865 457888888877654
No 26
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.53 E-value=4.3e-13 Score=159.69 Aligned_cols=251 Identities=18% Similarity=0.256 Sum_probs=206.8
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r--~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~ 108 (666)
.++..+.+.+.|+..- ..||.++..|++... ....+|+-.+++.++..++|.+..||++| .+.+.+++ ..+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~----~~~ 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVN----AVN 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHH----HSC
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH----hCC
Confidence 5778888888887555 888888888875543 25578998999999999999999999999 56666655 444
Q ss_pred cccHhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 109 QFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~-np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
.+++..++|.|.+.+.+. .|+.+..++..+..+....+..+..+||+++|.+-..+.|..++|+++|.+++..++..|.
T Consensus 128 ~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 567899999999999764 7999999999999998766788999999999999999999999999999999999998886
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCH--------------------------------------HHHHHHHHHHHHHHHh--c
Q 005975 188 NSPSVDYGRMAEILVQRAASPDE--------------------------------------FTRLTAITWINEFVKL--G 227 (666)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~--------------------------------------~irl~Al~WL~~~i~l--~ 227 (666)
+ .|++.+||.|++++.+|++ .+++.+...+.+++++ .
T Consensus 208 n---~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 208 N---KDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp C---TTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred C---cchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 6 5777777777777777653 5567778888899987 5
Q ss_pred CcccccchHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhCC-CC-------CCCChHhHHHHHHHhcCCC
Q 005975 228 GDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKAD-PA-------DGFDVGPILSIATRQLSSE 291 (666)
Q Consensus 228 ~~~l~pylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~-~~-------~~~dl~~il~~L~~~L~~~ 291 (666)
|.+..||+|+++|++-+... -++||+|+.|.++...|.+.... .. ..-|...+...+.+.+...
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDE 357 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTS
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhccc
Confidence 66889999999999999766 67899999999999999887654 11 1245667777788887654
No 27
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.52 E-value=4.2e-12 Score=146.03 Aligned_cols=315 Identities=13% Similarity=0.107 Sum_probs=214.4
Q ss_pred HHhhhhhHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHh
Q 005975 27 ETILQQIVPPVLNSF--SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~--~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDI 103 (666)
..+.+.+.|+|.+++ .|+++.||++|+.+++.+.+...+.+ +. ++.++.|.++++|+++.|+.+| .++..+
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i---- 214 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-PM-GDWTSRVVHLLNDQHLGVVTAATSLITTL---- 214 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-CC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-Cc-hhHHHHHHHHhCCCCccHHHHHHHHHHHH----
Confidence 568889999999999 99999999999999999998654333 31 2456777788899999999999 444443
Q ss_pred hcccccccHhhhHHHHHHhhc----C-------------CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC
Q 005975 104 VTESDQFSIEEFIPLLRERMN----V-------------LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD 166 (666)
Q Consensus 104 v~e~~~f~L~~fIPlL~eri~----~-------------~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD 166 (666)
..+... ....++|.+.+++. . +||..+..++.++..+....+.+....+.++++.+++.+.|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~ 293 (621)
T 2vgl_A 215 AQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQE 293 (621)
T ss_dssp HHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 333221 12234444444332 1 27999999999999887655567788888899988877766
Q ss_pred CCh-----------hHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc
Q 005975 167 SSH-----------EIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (666)
Q Consensus 167 ~~~-----------eVR~~A~~~L~~fL~eI~~~~~~d-~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py 234 (666)
+.+ .|.-.|.+++-.+ . +..+ ....++.|...+.++++.+|..|+.|+..++...+. .++
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l----~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~ 365 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHH----D--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEA 365 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHH----C--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHH
T ss_pred CcccccccccchHHHHHHHHHHHHHhc----C--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHH
Confidence 431 3333333333222 1 2222 456788888888899999999999999999876642 235
Q ss_pred hHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHH
Q 005975 235 YADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313 (666)
Q Consensus 235 lp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~ 313 (666)
+.+..+.++.|+. |++..||..|-+.. .+++.+ -+++.+++.|.+++.+.+.+.|..++.|++.++.+++..
T Consensus 366 ~~~~~~~i~~~L~~d~d~~Ir~~aL~lL---~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~ 438 (621)
T 2vgl_A 366 VKTHIETVINALKTERDVSVRQRAVDLL---YAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD 438 (621)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHH---HHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHH---HHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 6677788899999 99999998777664 444332 347889999999998888889999999999999988766
Q ss_pred HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhccc
Q 005975 314 VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 314 i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~ 367 (666)
...+++.++ +.+.+..+.|...+...+..+.. ++..-+..+..|.+.+.+
T Consensus 439 ~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~ 489 (621)
T 2vgl_A 439 YTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQA 489 (621)
T ss_dssp THHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcC
Confidence 655555444 43333333333333334444332 222223345555555543
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.5e-13 Score=137.82 Aligned_cols=196 Identities=10% Similarity=0.145 Sum_probs=159.5
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHH-HHHHhcchh--hhhHHHHHHHHHHhh-cCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYN-IAKVVRGDF--IIFFNQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~n-I~Kv~r~~i--l~~f~eIfd~L~kl~-~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.+-+.....+++++|+-|..|.+++.. +++.+..-. ...+.++++.|.+.+ .|++..|+.+| .++..+++++
T Consensus 16 kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--- 92 (249)
T 2qk1_A 16 KLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--- 92 (249)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH---
T ss_pred hCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc---
Confidence 344455677799999999999999988 875443322 233467788888888 68888877766 5544443322
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhhh-hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-~~Li-~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
+ ..+. .|...+++.++..+.|..+.||.++..+|+.+.+
T Consensus 93 ---------------------------------------~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~ 133 (249)
T 2qk1_A 93 ---------------------------------------KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICK 133 (249)
T ss_dssp ---------------------------------------CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 2 2456 7888999999999999999999999999999998
Q ss_pred HhhcCCCC--CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---cccccch-HhHHHHHhhhhcCCcHHHHHHHH
Q 005975 185 EIKNSPSV--DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYY-ADILGAILPCISDKEEKIRVVAR 258 (666)
Q Consensus 185 eI~~~~~~--d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~---~~l~pyl-p~lL~~LL~~Lsd~~~eIR~~A~ 258 (666)
.+.. ... .++.+++.|...++++++.+|..++.||..++...+ ..+.+|+ |.++|.+.++|.|+++++|..|.
T Consensus 134 ~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 134 YYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp HSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred Hccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7732 122 378999999999999999999999999999999877 4688999 99999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 005975 259 ETNEELRAIKAD 270 (666)
Q Consensus 259 ~~n~~L~~~i~~ 270 (666)
++.+.+++.+++
T Consensus 213 ~~l~~i~~~vG~ 224 (249)
T 2qk1_A 213 ESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhCH
Confidence 999999999985
No 29
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.51 E-value=7.9e-12 Score=150.16 Aligned_cols=352 Identities=11% Similarity=0.109 Sum_probs=231.4
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
......|...++.++.+.+..||..+|+++..|++. +.-..|+++++.|+.++.+++++.+.|| ..|..++|+.-.
T Consensus 80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~---d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS---DFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---HSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---hCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888878899999999998888753 3335689999999999988888899999 778888875432
Q ss_pred --ccc------cccHhhhHHHHHHh-------hcCCCH---HHH------HHHHHHHHHhh--cCCchhhhhchHHHHHH
Q 005975 106 --ESD------QFSIEEFIPLLRER-------MNVLNP---YVR------QFLVGWITVLD--SVPDIDMLGFLPDFLDG 159 (666)
Q Consensus 106 --e~~------~f~L~~fIPlL~er-------i~~~np---~vR------~~alswL~~L~--svp~~~Li~yLp~fL~g 159 (666)
.++ ...+..+.|.+.+. +....+ .+| ..++..++.+. ..|. .+..+++.+++.
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~-~~~~~~~~~~~~ 235 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPE-FFEDNIQVGMGI 235 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCH-HHHHTHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHH
Confidence 110 11255556655553 333222 234 22444444432 2333 244567777776
Q ss_pred HHHhcCCC--------C-------hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcC-----CCCHHHHHHHHHH
Q 005975 160 LFNMLSDS--------S-------HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-----SPDEFTRLTAITW 219 (666)
Q Consensus 160 Lf~lLsD~--------~-------~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~-----s~d~~irl~Al~W 219 (666)
+.+++... + ..||+.++++|..+.+.........++.+++.++..+. ..++.++..+++.
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 66665321 1 24889999999988865433212235666666665543 3467888889997
Q ss_pred HHHHHHhcC--cccc--cchHhHH-HHHhhhhcCCcH-----------------------HHHHHHHHHHHHHHHhhCCC
Q 005975 220 INEFVKLGG--DQLV--PYYADIL-GAILPCISDKEE-----------------------KIRVVARETNEELRAIKADP 271 (666)
Q Consensus 220 L~~~i~l~~--~~l~--pylp~lL-~~LL~~Lsd~~~-----------------------eIR~~A~~~n~~L~~~i~~~ 271 (666)
+..+++... ..+. ||++.++ +.++++|.+++. ..|..|..+...+....++
T Consensus 316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~- 394 (960)
T 1wa5_C 316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV- 394 (960)
T ss_dssp HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch-
Confidence 777776533 2343 8999999 899998864211 2555565555555444321
Q ss_pred CCCCChHhHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhhC---hHHHhh-----hhHHH-HHHHHHhcCCC---C
Q 005975 272 ADGFDVGPILSIATRQLS------SEWEATRIEALHWISTLLNRH---RTEVLH-----FLNDI-FDTLLKALSDP---S 333 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~------~~~~~tR~aaL~WL~~L~~~~---p~~i~~-----~l~~l-~p~LL~~LsD~---s 333 (666)
.-++.+++.+.+.+. +++|..|++|+..++.++++. ...+.. .+..+ ...+++.|.|+ .
T Consensus 395 ---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~ 471 (960)
T 1wa5_C 395 ---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH 471 (960)
T ss_dssp ---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC
T ss_pred ---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCC
Confidence 113455566666565 678999999999999999752 212211 22222 23455566777 8
Q ss_pred HHHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhcc
Q 005975 334 DEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (666)
Q Consensus 334 ~eVv~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~ 386 (666)
+.||..+||+++++++ .++++.+++..+++.+.++...+...+..-+.++|..
T Consensus 472 p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred ceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 9999999999999996 3578999999999999877777788888888998874
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=1.2e-11 Score=142.07 Aligned_cols=344 Identities=13% Similarity=0.059 Sum_probs=229.8
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
....+.|++.+.++|...|+.+..++.+.++. ..+. .--+...+.+-+.|+++.+|..| .+|.++.. .
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e~---~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~ 137 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQDV---HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------S 137 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHHH---HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------H
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcHH---HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------H
Confidence 44667777888889988888877766555432 1121 22456777778889999999888 55555421 1
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
--.+.++|.+..++.+.+|+||+.|+-++..+....+. .++.+++.+..++.|+++.|+.+|..+|.++...=+.
T Consensus 138 ~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~- 212 (618)
T 1w63_A 138 EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD- 212 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH-
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH-
Confidence 12577899999999999999999999999988764332 2346777788899999999999998888877531100
Q ss_pred CCCCHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc---CCcH
Q 005975 190 PSVDYGRMAEILVQRAA---------------SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS---DKEE 251 (666)
Q Consensus 190 ~~~d~~~iI~iLl~~~~---------------s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls---d~~~ 251 (666)
....+.++++.++..+. .+++..|..++.++..+....+. ...-+-.+++.+++... +.+.
T Consensus 213 ~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 213 MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchHH
Confidence 00123444454443222 35899999999999877654322 11112234444443322 2334
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCC
Q 005975 252 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (666)
Q Consensus 252 eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (666)
.+...|.++.. .. .. ..--....++.|...+.+++..+|..|+.++..+....|+-+.+|.+ .++.+|.|
T Consensus 292 aV~~ea~~~i~---~l-~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~d 361 (618)
T 1w63_A 292 AILYETVLTIM---DI-KS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHH---HS-CC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGGS
T ss_pred HHHHHHHHHHH---hc-CC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHccC
Confidence 55555555432 22 11 10001246678888888888899999999999999999988877765 45667799
Q ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhcc
Q 005975 332 PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEG 402 (666)
Q Consensus 332 ~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~ 402 (666)
++..|+..++++|..+++ +..++.++..|++.+.+...-.....-..|.++|....+ +.....+-+.+..
T Consensus 362 ~d~~Ir~~alelL~~l~~-~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~ 433 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVN-GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT 433 (618)
T ss_dssp SCHHHHHHHHHHHHHHCC-SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 999999999999999995 445788899999988766554555555567777776533 3444444444433
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.45 E-value=9.2e-11 Score=134.71 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=237.7
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCC-chhHHHHH-HHHHHHHHHhhccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i-l~~f~eIfd~L~kl~~D~-d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
...+|+++..+.|.|+.+|..|+.+|.++++...... +.....+++.|.+.+.+. ++.++..| ..|..+.++-- ..
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hH
Confidence 4468888899999999999999999999986432111 111246788888877654 77887766 66665544210 00
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y-Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
....-...+|.|.+.+.+.++.+|..++..+..+....+...... =...++.|.+++.+++.+++..+..+|..+...-
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 111123578999999999999999999999999976543222222 2567888999999999999999888888776311
Q ss_pred hc-CCCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCcHHHHHHHHHHHH
Q 005975 187 KN-SPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNE 262 (666)
Q Consensus 187 ~~-~~~~d~~~iI~iLl~~~~s~d-~~irl~Al~WL~~~i~l~~~~l~pyl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~ 262 (666)
.. ...+--...++.|+..+.+.+ +..+..++..+..+.. .+ .....+ ...++.+++.+.+.+++++..|..+..
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CT-THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-Cc-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00 000011245778888777765 4566667766665543 21 112221 246889999999889999998888877
Q ss_pred HHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCC--HHHHHH
Q 005975 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPS--DEVVLL 339 (666)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s--~eVv~~ 339 (666)
.+.+... .......+++.|.+.+.++++.+|..|..-|..+..+.++...... .+.++.|+..|.+.+ ++|+..
T Consensus 250 nL~~~~~---~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~ 326 (644)
T 2z6h_A 250 NLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 326 (644)
T ss_dssp HHGGGCT---TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhcch---hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHH
Confidence 7654322 1223468899999999999999999999999999887654322222 357888888887643 799999
Q ss_pred HHHHHHHHhhccc---hHH------HHHHHHHhhccccc-hhhhhHHHHHHHHHhc
Q 005975 340 VLEVHACIAKDLQ---HFR------QLVVFLVHNFRVDN-SLLEKRGALIIRRLCV 385 (666)
Q Consensus 340 ~l~lLa~Is~~~~---~F~------~fm~~LL~lf~~d~-~lLe~Rg~~IIR~Lc~ 385 (666)
++++|+.++.+.. +.+ ..+..|++++.++. .-+.......+++|+.
T Consensus 327 a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 327 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 9999999985321 111 36777888886653 3444445567788775
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.45 E-value=5.3e-12 Score=145.17 Aligned_cols=348 Identities=11% Similarity=0.056 Sum_probs=228.9
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
....+.|++++.++|...|+.+..++.++++...+. .--+...+.|-+.|+++.+|..| ..|.++.. .
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~----~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~ 141 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSEL----IRLINNAIKNDLASRNPTFMGLALHCIANVGS-------R 141 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHH----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------H
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHH----HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------H
Confidence 345678888999999999998887776665432222 23456677778889999999888 45544311 1
Q ss_pred ccHhhhHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005975 110 FSIEEFIPLLRERM--NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 110 f~L~~fIPlL~eri--~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~ 187 (666)
--.+.++|.+.+++ .+.+|+||+.|+-++..+....+ +++.+ +.+++.|.++++|+++.|+.+|..++.++...=+
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 13678999999999 99999999999999988876543 34443 5888999999999999999999888887765322
Q ss_pred cCCCCCHHHHHHHHHHhcC---C----------CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc----
Q 005975 188 NSPSVDYGRMAEILVQRAA---S----------PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE---- 250 (666)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~---s----------~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~---- 250 (666)
.....-++.++.+|-..+. . ++|..|...+.|+..+...........+.++++.++..+.+..
T Consensus 220 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKK 299 (621)
T ss_dssp HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccc
Confidence 1000112334444333221 1 2688999999998765533333445556667777776543321
Q ss_pred -----H--HHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--HHHhhhhHHH
Q 005975 251 -----E--KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR--TEVLHFLNDI 321 (666)
Q Consensus 251 -----~--eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p--~~i~~~l~~l 321 (666)
. .|-- ++...++..- +..--....++.|...+.+.+..+|..|+.|+..+....| +-+.+ .
T Consensus 300 l~~~n~~~aVl~---ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~----~ 369 (621)
T 2vgl_A 300 VQHSNAKNAVLF---EAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT----H 369 (621)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT----T
T ss_pred ccccchHHHHHH---HHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH----H
Confidence 1 2222 2222233321 1111134667788888888889999999999999998876 33444 4
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC--hHHHHHHHHH
Q 005975 322 FDTLLKALS-DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD--AERVYRELST 398 (666)
Q Consensus 322 ~p~LL~~Ls-D~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~--~E~Iy~~la~ 398 (666)
.+.++.+|. |++..|+..++++|..+++ +...+.++..|++.+.+...-.....-.-|..+|.... .+.....+.+
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ 448 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILN 448 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 556677888 9999999999999999994 56789999999998865433222222223455554432 2444455555
Q ss_pred hhcc
Q 005975 399 ILEG 402 (666)
Q Consensus 399 iL~~ 402 (666)
.+..
T Consensus 449 ll~~ 452 (621)
T 2vgl_A 449 LIRI 452 (621)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.43 E-value=1.1e-10 Score=128.91 Aligned_cols=338 Identities=13% Similarity=0.061 Sum_probs=222.4
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhh
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIV 104 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~--~il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv 104 (666)
+-...+|++...+.++|+.+|..|+.+|.++++.-.. .+. .-...++.|.+++. ++++.++..| ..|.++.++--
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~-~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH-hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 3455789999999999999999999999999753211 111 11356778887775 4477777666 77776644210
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
....+.-...+|.|.+.+.+.++.+|..++..+..+....+..-.. .=...++.|.+++.+++.++|..+..+|..+.
T Consensus 93 -~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 -GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp -HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0011112357999999999999999999999999987653321111 12567888889999999999988877776543
Q ss_pred HH-------hhcC------------C------------------CCC------HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 184 QE-------IKNS------------P------------------SVD------YGRMAEILVQRAASPDEFTRLTAITWI 220 (666)
Q Consensus 184 ~e-------I~~~------------~------------------~~d------~~~iI~iLl~~~~s~d~~irl~Al~WL 220 (666)
.. +... . ..+ -...++.|+..+.++++.++..++.-+
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L 251 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 20 1000 0 000 024678888888888888888888877
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCC--CcHHHHHH
Q 005975 221 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIE 298 (666)
Q Consensus 221 ~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tR~a 298 (666)
..+....+.. ....+++|.++..+.++++++|..|..+...+...-.+....+--...++.|.+.+.+ +++.+|..
T Consensus 252 ~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 252 RNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 7777654332 2356889999999999999999999888766532100000000001345666666643 34789999
Q ss_pred HHHHHHHHHhhChHH--Hh-h-hhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhccchHH-----HHHHHHHhhcccc
Q 005975 299 ALHWISTLLNRHRTE--VL-H-FLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDLQHFR-----QLVVFLVHNFRVD 368 (666)
Q Consensus 299 aL~WL~~L~~~~p~~--i~-~-~l~~l~p~LL~~LsD~s-~eVv~~~l~lLa~Is~~~~~F~-----~fm~~LL~lf~~d 368 (666)
|+.-|..+....++. .. . .-.+.+|.|++.|.+++ +.|+..++|+++.++.+...-. .++..|++++.++
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~ 409 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHH
Confidence 999999997765431 11 1 12246899999999987 5999999999999996433322 2456666666544
Q ss_pred ch
Q 005975 369 NS 370 (666)
Q Consensus 369 ~~ 370 (666)
..
T Consensus 410 ~~ 411 (529)
T 1jdh_A 410 HQ 411 (529)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.42 E-value=2e-10 Score=135.32 Aligned_cols=347 Identities=13% Similarity=0.044 Sum_probs=234.8
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhhccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~-il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
...+|+++..+.+.|+.||..|+.+|.++++..... .+..-+.+++.|++++. +.++.+|..| .+|..+.++--. .
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-L 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-H
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-H
Confidence 567889999999999999999999999998532111 11112467888887775 4478787766 677665542100 0
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQ-- 184 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL-p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~-- 184 (666)
....-...||.|.+.+.+.++.+|..++..|..+....+..-.... ...++.|.+++.+++.+|+..|..+|..+..
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 1111235799999999999999999999999999765433222222 4678888999999999999999888876652
Q ss_pred -HhhcCCCCCHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 185 -EIKNSPSVDYGRMAEILVQRAASPDEFTR-LTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 185 -eI~~~~~~d~~~iI~iLl~~~~s~d~~ir-l~Al~WL~~~i~l~~~~l~py--lp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
+.+.. -.+ ...++.|+..+.+.+++.+ ..++.-+..+.. .+.. .+. -...++.++..+.+.+++++..|..+
T Consensus 308 ~e~~~~-i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 308 QESKLI-ILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp HHHHHH-HHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTH-HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred hHHHHH-HHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHH-HHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 11100 001 2457777777777765544 345555554443 2211 111 23567899999999888888888776
Q ss_pred HHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCC--HHHH
Q 005975 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPS--DEVV 337 (666)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s--~eVv 337 (666)
...+..... .......+++.|.+.+.+.++.+|..|...|..|....++...... .+.++.|+..|.+.+ ++|+
T Consensus 384 L~~L~~~~~---~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~ 460 (780)
T 2z6g_A 384 LRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460 (780)
T ss_dssp HHHHHTTCT---TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccch---hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHH
Confidence 666553322 2223578999999999999999999999999999887654333222 357888888887633 4899
Q ss_pred HHHHHHHHHHhhccch---H------HHHHHHHHhhccccch-hhhhHHHHHHHHHhc
Q 005975 338 LLVLEVHACIAKDLQH---F------RQLVVFLVHNFRVDNS-LLEKRGALIIRRLCV 385 (666)
Q Consensus 338 ~~~l~lLa~Is~~~~~---F------~~fm~~LL~lf~~d~~-lLe~Rg~~IIR~Lc~ 385 (666)
..++++|+.|+.+... . ...+..|++++..... .+...+...+++|+.
T Consensus 461 ~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 9999999999853211 1 1246677887765543 455556678888885
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.41 E-value=1.4e-11 Score=137.86 Aligned_cols=358 Identities=18% Similarity=0.131 Sum_probs=233.5
Q ss_pred hHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 33 IVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 33 Il~pVL~~~~D-~d~rVR~~A~eaL~nI~Kv~r~~il~~f-~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
++|+++.+|.. .++.+++.|+.+|.||+........... ...++.|.+++.+++..||..| .+|..++.|-..-...
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999974 4589999999999999853221111111 1367889999999999999988 7888776532211111
Q ss_pred ccHhhhHHHHHHhhcCCCH-----HHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 110 FSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np-----~vR~~alswL~~L~svp-~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
.--...+|.|...+...+. .+...++..+.++..-. ...-......+++.|.+++.+++++|+..|+.+|..+.
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1122357777887765542 45566777777776532 22234456778899999999999999999999998876
Q ss_pred HHhhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc-cchHhHHHHHhhhhcCCcHHHHHHHHHHH
Q 005975 184 QEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETN 261 (666)
Q Consensus 184 ~eI~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~-pylp~lL~~LL~~Lsd~~~eIR~~A~~~n 261 (666)
..-... ..+--..+++.|+..+.++++.++..|+..+..++...+..-. -.-.+.++.+...+.++++++|..|..+.
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 311000 0001135788999999999999999999988877643321100 01234556667778888999999998887
Q ss_pred HHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHH
Q 005975 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLL 339 (666)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eVv~~ 339 (666)
..+...-.+....+--..+++.|...+.+.+..+|..|...|..+..+...+-..++ .+.++.|++.|..++++|+..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 665311000000000135778888899899999999999999999887644433333 367899999999999999999
Q ss_pred HHHHHHHHhh---ccchHHHHHHHHHhhccccchhh-hhHHHHHHHHHhccCChHHHHHHHHHhhcc
Q 005975 340 VLEVHACIAK---DLQHFRQLVVFLVHNFRVDNSLL-EKRGALIIRRLCVLLDAERVYRELSTILEG 402 (666)
Q Consensus 340 ~l~lLa~Is~---~~~~F~~fm~~LL~lf~~d~~lL-e~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~ 402 (666)
+++.|..|.. +...-.++ ..++ ++-|--.|..|+..=| +.||+.-.+++++
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~-----------~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~iie~ 475 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKL-----------SIMIEECGGLDKIEALQRHEN-ESVYKASLNLIEK 475 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH-----------HHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhccchHHH-----------HHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 9999988862 11111111 1112 2223335666655433 5677776777653
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.40 E-value=2.8e-10 Score=134.05 Aligned_cols=379 Identities=11% Similarity=0.071 Sum_probs=245.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccH
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L 112 (666)
++.++..+.+++..+|.+++..+..+. +..+ -...++.|.+++.+.++.||..| .+|..+.++-.....-...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~---~~~i---~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQD---DAEL---ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhh---HHHH---HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 578899999999999998887765432 2222 15678888888889999999888 7777776532111111113
Q ss_pred hhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 113 EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 113 ~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~--~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
+..+|.|.+.+.. .++.+|..++..+..+...+.. .+.. ...++.|..++.+++++||..|..+|..+...-...
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 4678888888875 4999999999999987665432 1222 267889999999999999999999999998642110
Q ss_pred C-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc---ccccchHhHHHHHhhhhcCCcH-HHHHHHHHHHHHH
Q 005975 190 P-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEE-KIRVVARETNEEL 264 (666)
Q Consensus 190 ~-~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~---~l~pylp~lL~~LL~~Lsd~~~-eIR~~A~~~n~~L 264 (666)
. .+--...++.|+..+.+++..++..|+.-+..+....++ .+. -.+.++.++..+.+.++ ..+..|..+...+
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL--ASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH--TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 0 000146889999999998988887776655544321110 111 12456667777776554 4445555555444
Q ss_pred HHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
... .+....+--..+++.|...+.+.+..++..|+.-|..+....+.. ....+++|.|++.|.+++++|+..++++|
T Consensus 347 s~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 311 000000000245788888888888889999988888888776542 33568999999999999999999999999
Q ss_pred HHHhhccchHH------HHHHHHHhhcccc--chhhhhHHHHHHHHHhccCCh----------HHHHHHHHHhhcccCCh
Q 005975 345 ACIAKDLQHFR------QLVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDA----------ERVYRELSTILEGEADL 406 (666)
Q Consensus 345 a~Is~~~~~F~------~fm~~LL~lf~~d--~~lLe~Rg~~IIR~Lc~~L~~----------E~Iy~~la~iL~~~~dl 406 (666)
+.++.+..... ..+..|++++.+. ..-+...+...+++||..-+. +.....|.+.|....+.
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 99996432221 2566677766542 224555667788888764321 12356677777666656
Q ss_pred HHHHHHHHHHHHHhccchh
Q 005975 407 DFACTMVQALNLILLTSSE 425 (666)
Q Consensus 407 ~F~~~mVq~Ln~iLLTs~E 425 (666)
+.....+.+|.++-...+.
T Consensus 504 ~v~~~A~~aL~nLa~~~~~ 522 (780)
T 2z6g_A 504 PLIKATVGLIRNLALCPAN 522 (780)
T ss_dssp HHHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHHhcCHHH
Confidence 7777888888888765443
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=8.2e-12 Score=121.43 Aligned_cols=186 Identities=23% Similarity=0.187 Sum_probs=152.5
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
.+-+...+.++..+.|+|+.+|..|+++|..+.. ++.++.|.+++.|+++.||..| ..|.++
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~------- 72 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI------- 72 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH-------
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh-------
Confidence 3456678999999999999999999999877631 2346777888899999999988 555543
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
.-+..+|.|.+.+.+.+|.+|..++..+..+.. ++.++.|.+++.|+++.||..|..+|+.+-.
T Consensus 73 ----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 73 ----GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 123568999999999999999999999987643 4567778889999999999999998887642
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
+..++.|+..+.++++.+|..|+..+..+ + -+..++.+...+.++++++|..|.++...+
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~---~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEI---G-------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46788899999999999999999999866 2 267888899999999999999999887654
No 38
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.39 E-value=2.9e-09 Score=127.22 Aligned_cols=363 Identities=10% Similarity=0.085 Sum_probs=239.6
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
.++++.+++ ++..+.++++.||+.||..+...++..... ..+++.+++.|+..+.| +.|+..| .++.+++++.-.
T Consensus 485 ~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 485 SDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp CSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred hHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 356777777 556778789999999999999887754432 25677888888888866 7787777 889999887544
Q ss_pred ccccccHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcC-----CCChhHHHH---
Q 005975 106 ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLS-----DSSHEIRQQ--- 174 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~--~np~vR~~alswL~~L~svp-~~~Li~yLp~fL~gLf~lLs-----D~~~eVR~~--- 174 (666)
....+ ++.++..+.+.+.. .+...|..+++.+..+.... ..+..+|+..+++.+...+. +.+++.+..
T Consensus 561 ~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 639 (963)
T 2x19_B 561 DLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVH 639 (963)
T ss_dssp GCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHH
T ss_pred HHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33333 66677777666664 46799999999999887644 47889999999998876542 236666653
Q ss_pred HHHHHHHHHHHhhcCCC-----------------C-----CHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCcc
Q 005975 175 ADSALWEFLQEIKNSPS-----------------V-----DYGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQ 230 (666)
Q Consensus 175 A~~~L~~fL~eI~~~~~-----------------~-----d~~~iI~iLl~~~~--s~d~~irl~Al~WL~~~i~l~~~~ 230 (666)
+..+|..+.+.+..... . -++.+++.+...+. ..+..+...++..+..++...+..
T Consensus 640 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 640 ILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence 45566666666643110 0 13455665544332 246778888888999999888999
Q ss_pred cccchHhHHHHHhhhhcC-CcHHHHHHHHHHHHHHHHhhCCCCC-CCChHhHHHHHHHh----c---CCCcHHHHHHHHH
Q 005975 231 LVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQ----L---SSEWEATRIEALH 301 (666)
Q Consensus 231 l~pylp~lL~~LL~~Lsd-~~~eIR~~A~~~n~~L~~~i~~~~~-~~dl~~il~~L~~~----L---~~~~~~tR~aaL~ 301 (666)
+.||+|.+++.++..... ..+.+ ......+....+.... .-.+..+++.+.+. + ..+..++|.+++.
T Consensus 720 ~~~~l~~~~~~l~~~~~~~~~~~~----l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ 795 (963)
T 2x19_B 720 FAPMVPQLCEMLGRMYSTIPQASA----LDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQ 795 (963)
T ss_dssp TGGGHHHHHHHHHHHHHHSCCHHH----HHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHH
Confidence 999999999998876553 23322 2223333332221111 11123333332222 1 2346889999999
Q ss_pred HHHHHHhhChHHHh--hh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------cchHHHHHHHHHhhccc
Q 005975 302 WISTLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 302 WL~~L~~~~p~~i~--~~-l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-----------~~~F~~fm~~LL~lf~~ 367 (666)
.+..+...+|..+. +. ++.+++.++..|.+++.++...+++.|..+.++ ..++..++..++.-+.+
T Consensus 796 ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 875 (963)
T 2x19_B 796 LLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGG 875 (963)
T ss_dssp HHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999886 55 889999999999999999999999999998842 23455555555554432
Q ss_pred -c-chhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005975 368 -D-NSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (666)
Q Consensus 368 -d-~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (666)
. +..++. ...|++.|... +++.+-.-+.+.|
T Consensus 876 ~~~~~~~~~-~~~il~~l~~~-~~~~~~~~l~~~l 908 (963)
T 2x19_B 876 QASRSLMDC-FADILFALNKH-CFSLLSMWIKEAL 908 (963)
T ss_dssp TSCGGGHHH-HHHHHHHHHHH-SHHHHHHHHHHHT
T ss_pred cCChhHHHH-HHHHHHHHHHH-ChHHHHHHHHHHh
Confidence 1 333332 34456655443 2333333344444
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=1.2e-11 Score=121.11 Aligned_cols=183 Identities=23% Similarity=0.181 Sum_probs=150.7
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
+..++.++..+.|+|+.+|..|+++|..+.. ++.++.|.+++.|+++.||..| ..|.++
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~---------- 77 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI---------- 77 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHH----------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhh----------
Confidence 5678999999999999999999999876531 2456778888899999999988 555543
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
.-+..+|.|.+.+.+.++.+|..++..+..+.. ++.++.|.+++.|++++||..|..+|+.+-.
T Consensus 78 -~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 78 -GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred -CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 124568999999999999999999999987643 4567778889999999999999998887631
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
+..++.|+..+.++++.+|..|+..+..+- -+..++.+...+.|+++++|..|.++...+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 457888899999999999999999888652 278899999999999999999999887654
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.37 E-value=1.6e-10 Score=118.14 Aligned_cols=252 Identities=16% Similarity=0.061 Sum_probs=190.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHH
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~ 195 (666)
+|.|.+.+.+.|+.+|..++..+..+.. |..++.|.+++.|+++.||..|..+|+.+- . ....+.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~----~-~~~~~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK----I-CKKCED 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC----C-CTTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc----c-ccccch
Confidence 6778888899999999999999987652 677888999999999999999988886653 1 123466
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCC
Q 005975 196 RMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 274 (666)
Q Consensus 196 ~iI~iLl~-~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~ 274 (666)
.+++.+.. ...++++.+|..|+..+..+....+ ++.+.+++.+...+.|+++.+|..|..+.+.+- +
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN----D---- 157 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----C----
Confidence 77787764 5678899999999998887764332 356789999999999999999999988775421 1
Q ss_pred CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH
Q 005975 275 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF 354 (666)
Q Consensus 275 ~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F 354 (666)
...++.|.+.+.++++.+|..|...|+.+.. ..+..+|.|++.|.|+++.|+..+++.|+++.. +.
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-~~-- 223 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-KR-- 223 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-GG--
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-Hh--
Confidence 3467888888999999999999999987632 234678899999999999999999999999983 22
Q ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHH
Q 005975 355 RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAL 416 (666)
Q Consensus 355 ~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~L 416 (666)
.+..|++.+.++. +.... ++-|... +.+.+...|-+.+.++.|.+++...++.|
T Consensus 224 --~~~~L~~~l~d~~--vr~~a---~~aL~~i-~~~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 224 --VLSVLCDELKKNT--VYDDI---IEAAGEL-GDKTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp --GHHHHHHHHTSSS--CCHHH---HHHHHHH-CCGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred --hHHHHHHHhcCcc--HHHHH---HHHHHhc-CchhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 3344444444432 23332 3333332 34577888888888888888887777766
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.35 E-value=8.4e-11 Score=132.08 Aligned_cols=317 Identities=16% Similarity=0.099 Sum_probs=216.5
Q ss_pred hhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc
Q 005975 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (666)
Q Consensus 32 ~Il~pVL~~~~-D~d~rVR~~A~eaL~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~ 108 (666)
.++|+++.++. +.++.+++.|+.+|.||+........ ..-...++.|.+++.+++..|+..| .+|..++.|-..-..
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 47899999996 55699999999999999854322111 1112468889999999999999988 778777643211001
Q ss_pred cccHhhhHHHHHHhhcCCCH-----HHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005975 109 QFSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np-----~vR~~alswL~~L~svp-~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~f 182 (666)
..--...+|.|...+...+. .+...++..+..+..-. ...-......+++.|.+++.+++++|+..|+.+|..+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 11112357788888875442 34566677777776432 2223445677889999999999999999999999887
Q ss_pred HHHhhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc-ccchHhHHHHHhhhhcCCcHHHHHHHHHH
Q 005975 183 LQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADILGAILPCISDKEEKIRVVARET 260 (666)
Q Consensus 183 L~eI~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l-~pylp~lL~~LL~~Lsd~~~eIR~~A~~~ 260 (666)
...-... ..+--..+++.|+..+.++++.++..|+..+..++...+..- .-.-.+.++.+...+.++++++|..|..+
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 7411000 001114578899999999999999999998887764322110 00123456677778888999999999888
Q ss_pred HHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHH
Q 005975 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVL 338 (666)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eVv~ 338 (666)
...+...-.+....+--..+++.|...+.+.+..+|..|...|..+..+...+-..++ .+.++.|+..|..++++|+.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 7665421000000000035778888889999999999999889888876543333222 35789999999999999999
Q ss_pred HHHHHHHHHh
Q 005975 339 LVLEVHACIA 348 (666)
Q Consensus 339 ~~l~lLa~Is 348 (666)
.+++.|..|.
T Consensus 439 ~~L~aL~nil 448 (529)
T 3tpo_A 439 VILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988886
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.35 E-value=2.1e-10 Score=131.65 Aligned_cols=328 Identities=13% Similarity=0.067 Sum_probs=221.2
Q ss_pred hhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc
Q 005975 32 QIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 32 ~Il~pVL~~~~D-~d~rVR~~A~eaL~nI~Kv~r~--~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
.++++++..+.+ .+..+|..|+.+|.++++.... .+.. ...++.|.+++.++++.|+..| .+|..++.+--...
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 578899999875 4899999999999988653211 1111 2478889999999999888877 78888766421111
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHH
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFLQE 185 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~-~eVR~~A~~~L~~fL~e 185 (666)
....-...+|.|.+.+.+.+++++..++..+..+..-.+.. ....=...++.|.+++.+.+ .+++..+..+|..+..
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-
Confidence 11112567999999999999999999988998887532211 11111245677777887765 4566777777666542
Q ss_pred hhcCCCC-C---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHH
Q 005975 186 IKNSPSV-D---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (666)
Q Consensus 186 I~~~~~~-d---~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n 261 (666)
.+.. + -...++.|+..+.++++.++..++.-+..+....+.. .....++|.++..+.+.++++|..|..+.
T Consensus 213 ---~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 213 ---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp ---CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ---CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1110 0 1347889999999999999999998888887654432 33568999999999999999999998887
Q ss_pred HHHHHhhCCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChHH--Hh--hhhHHHHHHHHHhcCCCC-H
Q 005975 262 EELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTE--VL--HFLNDIFDTLLKALSDPS-D 334 (666)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tR~aaL~WL~~L~~~~p~~--i~--~~l~~l~p~LL~~LsD~s-~ 334 (666)
..+...-.+....+--...++.|.+.+.+ +.+.+|..|+.-|..+....++. .. -...+.+|.|++.|.+++ +
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence 66642100000000001355666666654 23789999999999997654431 11 112457899999999886 6
Q ss_pred HHHHHHHHHHHHHhhccchHH-----HHHHHHHhhccc
Q 005975 335 EVVLLVLEVHACIAKDLQHFR-----QLVVFLVHNFRV 367 (666)
Q Consensus 335 eVv~~~l~lLa~Is~~~~~F~-----~fm~~LL~lf~~ 367 (666)
.|+..++|+|+.++.++..-. .++..|++++.+
T Consensus 368 ~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 999999999999995433222 255566666654
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=4.7e-11 Score=116.94 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=155.1
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~ 192 (666)
+..+|.|.+.+.+.++.+|..++..+..+.. +..++.|.+++.|+++.||..|..+|+.+-.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 5568888899999999999999999987653 5677888889999999999999888877641
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCC
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
+..++.|+..+.++++.+|..|+..+..+- . +..++.+...+.|+++++|..|..+.+.+ .+
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~-- 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D-------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD-- 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC--
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC--
Confidence 457888999999999999999999887552 2 56778888999999999999999887664 21
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005975 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (666)
Q Consensus 273 ~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~ 350 (666)
...++.|...+.++++.+|.+|...|..+.. +..++.|.+.+.|+++.|+..+.+.|..+..+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4678889999999999999999999998842 56788888889999999999999999999854
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.34 E-value=7.3e-10 Score=132.41 Aligned_cols=370 Identities=12% Similarity=0.085 Sum_probs=231.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC-----CchhHHHHH-HHHHHHHHHhhcccc---------
Q 005975 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD-----SDANVQSAA-HLLDRLVKDIVTESD--------- 108 (666)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D-----~d~~Vr~gA-~~LdrLlKDIv~e~~--------- 108 (666)
..+.||...|.++..|++..- ...|+++++.|..++.+ +++....++ ..|..+.+++.....
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~---p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~ 191 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMM---PDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVR 191 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT---TTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------
T ss_pred CCHHHHHHHHHHHHHHHHHhC---ccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHH
Confidence 358999999999888886422 23478899999988765 255566677 777777776532200
Q ss_pred ---cccHhhhHHHHHHhhcC---------------------------------------CCHHHHHHHHHHHHHhhcCCc
Q 005975 109 ---QFSIEEFIPLLRERMNV---------------------------------------LNPYVRQFLVGWITVLDSVPD 146 (666)
Q Consensus 109 ---~f~L~~fIPlL~eri~~---------------------------------------~np~vR~~alswL~~L~svp~ 146 (666)
....+.+++.+.+.+.. .+|.+|..+++++..+...+.
T Consensus 192 ~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~ 271 (963)
T 2x19_B 192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPD 271 (963)
T ss_dssp CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccc
Confidence 01123333333333322 245566666666666655432
Q ss_pred -hhhhhchHHHHHHHHHh-------cCCCChhHHHHHHHHHHHHHHH----hhcC--CCCCHHHHHHHHHHhcCC-----
Q 005975 147 -IDMLGFLPDFLDGLFNM-------LSDSSHEIRQQADSALWEFLQE----IKNS--PSVDYGRMAEILVQRAAS----- 207 (666)
Q Consensus 147 -~~Li~yLp~fL~gLf~l-------LsD~~~eVR~~A~~~L~~fL~e----I~~~--~~~d~~~iI~iLl~~~~s----- 207 (666)
.+...++..++++++.. +.+.+.+..+..++++..+.+. +... ...++..+++.++.+..+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 351 (963)
T 2x19_B 272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYP 351 (963)
T ss_dssp GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTT
T ss_pred cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCC
Confidence 22233444444444432 2334556666666777777643 2211 113567889999988875
Q ss_pred CCHHHHHHHHHHHHHHHH-h----------cCcccccchHhHHHHHhhhhcCCcHH---------------HHHHHHHHH
Q 005975 208 PDEFTRLTAITWINEFVK-L----------GGDQLVPYYADILGAILPCISDKEEK---------------IRVVARETN 261 (666)
Q Consensus 208 ~d~~irl~Al~WL~~~i~-l----------~~~~l~pylp~lL~~LL~~Lsd~~~e---------------IR~~A~~~n 261 (666)
.++.+...|++.+..+++ . ....+.|+++++++.+++.|.+++++ .|..+.++.
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L 431 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHH
Confidence 356667777775545554 2 12235689999999999999765331 233444444
Q ss_pred HHHHHhhCCCCCCCChHhHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 005975 262 EELRAIKADPADGFDVGPILSIATRQL----SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (666)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L----~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv 337 (666)
..+.....+ .-+..+++.+.+.+ .+.+|..|++++.+++.+++++.++..++++.+++. +..+.++++.|+
T Consensus 432 ~~~~~~~~~----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~-l~~l~~~~~~vr 506 (963)
T 2x19_B 432 MYVYEMLGA----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGL-IPRISISNVQLA 506 (963)
T ss_dssp HHHHHHHTH----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH-GGGSCCCSHHHH
T ss_pred HHHHHHccH----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH-HHhCCCCcHHHH
Confidence 333333321 01234555566666 677899999999999999999988777889999985 456777789999
Q ss_pred HHHHHHHHHHhh----ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhccc-CCh
Q 005975 338 LLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-ADL 406 (666)
Q Consensus 338 ~~~l~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~~~-~dl 406 (666)
..++|+++++++ +.+|+..++..++..+.+ +.+..++..-++++|..... +.+...+..++.+. .+.
T Consensus 507 ~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~ 584 (963)
T 2x19_B 507 DTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKT 584 (963)
T ss_dssp HHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCh
Confidence 999999999984 457888899999988854 45566777778888865432 45555555555432 133
Q ss_pred HHHHHHHHHHHHHhccc
Q 005975 407 DFACTMVQALNLILLTS 423 (666)
Q Consensus 407 ~F~~~mVq~Ln~iLLTs 423 (666)
+--..++..+..++-+.
T Consensus 585 ~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 585 SQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33344555566655443
No 45
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.34 E-value=1.3e-10 Score=140.10 Aligned_cols=351 Identities=14% Similarity=0.114 Sum_probs=237.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchh-HHHHH-HHHHHHHHHhhccc--------------
Q 005975 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDAN-VQSAA-HLLDRLVKDIVTES-------------- 107 (666)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~-Vr~gA-~~LdrLlKDIv~e~-------------- 107 (666)
..+-+|.-.|.++..|++..-. ..|++.++.|..++..++.+ +.... ..|..+-+++....
T Consensus 102 ~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~l 178 (980)
T 3ibv_A 102 EPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLV 178 (980)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHH
Confidence 4567999999999888875322 34667777777666533321 11111 22333334543210
Q ss_pred ----ccccHhhhHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005975 108 ----DQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 108 ----~~f~L~~fIPlL~eri----~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
...+++.+.+...+.+ ...++.++..+++++....+..+.+++.. +.+++.+|++++| +++|.+|++||
T Consensus 179 kd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~--~~~r~~A~ecL 255 (980)
T 3ibv_A 179 KDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI--EELRCAACETM 255 (980)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS--HHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC--hHHHHHHHHHH
Confidence 0112333344444444 34789999999999998888666666555 8999999999987 68899998887
Q ss_pred HHHHHHhh-------------------------------------------------cCCC-----------CCHHHHHH
Q 005975 180 WEFLQEIK-------------------------------------------------NSPS-----------VDYGRMAE 199 (666)
Q Consensus 180 ~~fL~eI~-------------------------------------------------~~~~-----------~d~~~iI~ 199 (666)
.+++..-. +.++ .++..+++
T Consensus 256 ~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~ 335 (980)
T 3ibv_A 256 TEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFP 335 (980)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHH
T ss_pred HHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHH
Confidence 66542110 0010 22456889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHh----c-----CcccccchHhHHHHHhhhhcCCcH-------------HHHHHH
Q 005975 200 ILVQRAASPDEFTRLTAITWINEFVKL----G-----GDQLVPYYADILGAILPCISDKEE-------------KIRVVA 257 (666)
Q Consensus 200 iLl~~~~s~d~~irl~Al~WL~~~i~l----~-----~~~l~pylp~lL~~LL~~Lsd~~~-------------eIR~~A 257 (666)
.++.++.++++++-..++..+..++.. . ...+.||+++++++++..|.|+++ +.++ .
T Consensus 336 ~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e-~ 414 (980)
T 3ibv_A 336 YLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQE-M 414 (980)
T ss_dssp HHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHH-H
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHH-H
Confidence 999999999999888888866666653 2 244579999999999999987421 1222 2
Q ss_pred HHHHHHHHHhhCCCCCCCChH----hHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChHHH------hhhhHHHHHH
Q 005975 258 RETNEELRAIKADPADGFDVG----PILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEV------LHFLNDIFDT 324 (666)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~dl~----~il~~L~~~L~---~~~~~tR~aaL~WL~~L~~~~p~~i------~~~l~~l~p~ 324 (666)
.+....+++.+.--+...-+. .+.+.+.+.+. +.+|..+++++..++.+.+++++.. .++++.+++.
T Consensus 415 Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 415 RKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 333334444332101111112 44445556563 4569999999999999999987632 3577788887
Q ss_pred HHHhcC-----CCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHh--hccccchhhhhHHHHHHHHHhccCCh----
Q 005975 325 LLKALS-----DPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVH--NFRVDNSLLEKRGALIIRRLCVLLDA---- 389 (666)
Q Consensus 325 LL~~Ls-----D~s~eVv~~~l~lLa~Is~----~~~~F~~fm~~LL~--lf~~d~~lLe~Rg~~IIR~Lc~~L~~---- 389 (666)
+...++ ++.+.|+..++|+++++++ +.+|+.+++..++. .+.+.++-+..|+..-++++|+...+
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~ 574 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN 574 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh
Confidence 777755 8899999999999999993 67899999999999 88777777899999999999987754
Q ss_pred --HHHHHHHHHhhc
Q 005975 390 --ERVYRELSTILE 401 (666)
Q Consensus 390 --E~Iy~~la~iL~ 401 (666)
+.|...+...|.
T Consensus 575 ~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 575 YTESSLAMLGDLLN 588 (980)
T ss_dssp SHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHhhc
Confidence 567777777766
No 46
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.32 E-value=9.9e-10 Score=131.70 Aligned_cols=313 Identities=10% Similarity=0.074 Sum_probs=207.3
Q ss_pred HHhhhhhHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHh
Q 005975 27 ETILQQIVPPVLNSFS--DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~--D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDI 103 (666)
.++++.+++ ++..+. |+++.||+.||..+...++..... ..|++.+++.|.+.+ | +.|+..| .++.+++++.
T Consensus 500 ~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 500 KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp -CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 457777887 666666 679999999999999888765432 267888899988877 4 6677777 8889988765
Q ss_pred hcccccccHhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhc----CCC--ChhHHHH
Q 005975 104 VTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNML----SDS--SHEIRQQ 174 (666)
Q Consensus 104 v~e~~~f~L~~fIPlL~eri~~--~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lL----sD~--~~eVR~~ 174 (666)
-.+...+ ++.++..+.+.+.. .+...+..+++.+..+.. +|+.+..+|+..+++.+.+.+ ..+ +++-+..
T Consensus 575 ~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~ 653 (971)
T 2x1g_F 575 QLQLKPY-ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIR 653 (971)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHH
T ss_pred HHhcccc-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Confidence 4333222 56666666666665 467899999999997755 566788888888888887543 222 3434444
Q ss_pred HHHHHH---HHHHHhhcC----------CCC---CHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCcccccchH
Q 005975 175 ADSALW---EFLQEIKNS----------PSV---DYGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (666)
Q Consensus 175 A~~~L~---~fL~eI~~~----------~~~---d~~~iI~iLl~~~~--s~d~~irl~Al~WL~~~i~l~~~~l~pylp 236 (666)
...+++ .++..++.. ++. -.+.+++.+...+. ..++.+...++..++.++...+..+.||+|
T Consensus 654 ~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~ 733 (971)
T 2x1g_F 654 TIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ 733 (971)
T ss_dssp HHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH
T ss_pred HHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH
Confidence 444444 444444321 010 14556776665543 236788888999888888887888999999
Q ss_pred hHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCC-ChHhHHHH----HHHhcCC-------CcHHHHHHHHHHHH
Q 005975 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF-DVGPILSI----ATRQLSS-------EWEATRIEALHWIS 304 (666)
Q Consensus 237 ~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~-dl~~il~~----L~~~L~~-------~~~~tR~aaL~WL~ 304 (666)
.+++.++..+..... ..+-...+.+.+..+..+... .+..++.. ....+.. ++++++.+.+..+.
T Consensus 734 ~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~ 810 (971)
T 2x1g_F 734 DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLT 810 (971)
T ss_dssp HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHH
Confidence 999999987765321 123333333333332211100 12233332 2222222 35789999999999
Q ss_pred HHHhhChHHHh--hh-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 305 TLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 305 ~L~~~~p~~i~--~~-l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
.+..++|..+. ++ ++.+++..+.+|.-++..+...++..|+.+.
T Consensus 811 ~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 811 QIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999997 78 8999999999998877778888888887765
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.32 E-value=6.3e-10 Score=124.55 Aligned_cols=385 Identities=14% Similarity=0.100 Sum_probs=251.1
Q ss_pred HHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhh-----hHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch
Q 005975 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE-----FIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDI 147 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~-----fIPlL~eri~-~~np~vR~~alswL~~L~svp~~ 147 (666)
++.+.+.+.+.|++++-.| ..+-+++ ..+. ..+++. .||.|.+.+. ..+|.++..++..|.++.+-.+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rkll---s~e~-~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLL---SREK-QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TCSS-CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCC-CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4556677777888777655 5555543 1221 222332 5899999996 46799999999999999875543
Q ss_pred hhhhchH-HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 005975 148 DMLGFLP-DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDE-----FTRLTAITWI 220 (666)
Q Consensus 148 ~Li~yLp-~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~~s~d~-----~irl~Al~WL 220 (666)
.-..... ..++.|.++|.+++.+||..|..+|..+...-... ..+--...++.|+..+.+++. ..+..+...+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 3222222 35778888999999999999999999887421100 000013457778888877653 2344455455
Q ss_pred HHHHHhc-CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHH
Q 005975 221 NEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 299 (666)
Q Consensus 221 ~~~i~l~-~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aa 299 (666)
..++.-. +..-......++|.+...+.+.+++++..|..+...+...-.+....+--..+++.|.+.+.+.+..++..+
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 5544422 222233467899999999999999999988887765532100000000013567888889999999999999
Q ss_pred HHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH------HHHHHHHhhccccchhh
Q 005975 300 LHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNSLL 372 (666)
Q Consensus 300 L~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~------~fm~~LL~lf~~d~~lL 372 (666)
+..++.+..+.+....... .+.++.|...|++++++|+..++|+|+.|+.+...-. .++..|+.++.+...-.
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9999999887765443333 3577888899999999999999999999996433322 25667788887776666
Q ss_pred hhHHHHHHHHHhccCChHH--------HHHHHHHhhcccCChHHHHHHHHHHHHHhccchhH---HHHHHHHHhccCCcc
Q 005975 373 EKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQALNLILLTSSEL---SELRDLLKKSLVNPA 441 (666)
Q Consensus 373 e~Rg~~IIR~Lc~~L~~E~--------Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El---~~lR~~L~~~l~~~~ 441 (666)
+..+...+.+++..-+.|. +...|.+.|. ..|.+.+......|.+||-.++.+ ..++..+.+ ..
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee----~g 449 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE----CG 449 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH----cC
Confidence 7777889999988666553 3455666664 478889889999999988554432 233333322 22
Q ss_pred hHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHh
Q 005975 442 GKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL 480 (666)
Q Consensus 442 ~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a~~l~~~~ 480 (666)
+.+....| =.|.- .+-|+.|++||.+|
T Consensus 450 gl~~ie~L---q~~~n---------~~i~~~A~~iie~y 476 (510)
T 3ul1_B 450 GLDKIEAL---QRHEN---------ESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHG---GGCSS---------HHHHHHHHHHHHHH
T ss_pred cHHHHHHH---HcCCC---------HHHHHHHHHHHHHH
Confidence 22222222 12221 14589999999776
No 48
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.31 E-value=2.3e-10 Score=134.50 Aligned_cols=382 Identities=13% Similarity=0.040 Sum_probs=257.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhc-c---hhh--hhHHHHHHHHHHhhcCC--chhHHHHH-HHHHHHHHH-hh
Q 005975 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVR-G---DFI--IFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKD-IV 104 (666)
Q Consensus 35 ~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r-~---~il--~~f~eIfd~L~kl~~D~--d~~Vr~gA-~~LdrLlKD-Iv 104 (666)
|++..-+...+..+|..|..+|-++..... + ... .-..++.+.+.+++.++ |..++..| ++|..+..+ -+
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 777777778888888888777766653211 1 111 22467788888888776 77777666 887776432 11
Q ss_pred ccccccc-HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--------hhhhc----------------hH-----
Q 005975 105 TESDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--------DMLGF----------------LP----- 154 (666)
Q Consensus 105 ~e~~~f~-L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~--------~Li~y----------------Lp----- 154 (666)
.+ ... -..+||.|.+.+.+.++.+.+.++..+.++..-++. .+..| .-
T Consensus 413 k~--~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 413 KE--KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HH--HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HH--HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 11 111 146899999999999999999999999999864320 01111 10
Q ss_pred ----HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005975 155 ----DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (666)
Q Consensus 155 ----~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~ 230 (666)
..++.|..++..++++||..|..+|..+...-.....+-=...++.|+..+.++++..|..|...|..++......
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence 3567788899999999999999999988732111000111457889999999999999999999998877643322
Q ss_pred c-cc--chHhHHHHHhhhhcCC-cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005975 231 L-VP--YYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (666)
Q Consensus 231 l-~p--ylp~lL~~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L 306 (666)
. .+ -..+.+|.|+..|..+ ....+..|..+...+...-.+....+--...++.|...+.+++..+|.+|..-+..+
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 11 1235778888888744 333344455555444321000000000024567788888888899999999999988
Q ss_pred HhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccc----hHH--HHHHHHHhhccccchhhhhHHH
Q 005975 307 LNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQ----HFR--QLVVFLVHNFRVDNSLLEKRGA 377 (666)
Q Consensus 307 ~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~----~F~--~fm~~LL~lf~~d~~lLe~Rg~ 377 (666)
.. .++....+. .+.++.|++.+..++.+++..++|.|+.++. ++. -++ ..+..|++++.++..-++.++.
T Consensus 651 a~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 651 VM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp TT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred hC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 76 444555555 3689999999999999999999999999996 222 232 3777888888888778899999
Q ss_pred HHHHHHhccCChH--------HHHHHHHHhhccc--CChHHHHHHHHHHHHHh
Q 005975 378 LIIRRLCVLLDAE--------RVYRELSTILEGE--ADLDFACTMVQALNLIL 420 (666)
Q Consensus 378 ~IIR~Lc~~L~~E--------~Iy~~la~iL~~~--~dl~F~~~mVq~Ln~iL 420 (666)
..+.+++.. +.| .+...|.+++... .+.+++...++.|..++
T Consensus 730 ~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 730 VIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999999873 332 3455566666543 57889999998887775
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.30 E-value=5.8e-10 Score=135.25 Aligned_cols=333 Identities=12% Similarity=0.041 Sum_probs=218.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc---------------
Q 005975 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD--------------- 108 (666)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~--------------- 108 (666)
++.||...|.++..|++.. ....|+++++.|..+++ ++++.+.++ ..|..+.+++..-..
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~---~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l 188 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQE---WPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSM 188 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHH---TTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh---CcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 4789999999988887642 22468899999998886 455566666 778888877663100
Q ss_pred cccHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHH-
Q 005975 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQE- 185 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf-~lLsD~~~eVR~~A~~~L~~fL~e- 185 (666)
.-.++.+.+.+...+.. .++.++..++.++..+.+..+.+.+.- +.+++.++ .+++ ++++|.+|++||.+++..
T Consensus 189 ~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~-~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 189 SKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFMT--SPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh-hhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC
Confidence 11244455555555543 567888888888876654333222111 34555555 2332 456666666655444421
Q ss_pred ------------------------------------------------------------------hhcCC--CCCHHHH
Q 005975 186 ------------------------------------------------------------------IKNSP--SVDYGRM 197 (666)
Q Consensus 186 ------------------------------------------------------------------I~~~~--~~d~~~i 197 (666)
+...+ ...+..+
T Consensus 266 ~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (1049)
T 3m1i_C 266 IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNA 345 (1049)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 00000 0113446
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH----h--cCcccccchHhHHHHHhhhhcCCcH--------------------
Q 005975 198 AEILVQRAASPDEFTRLTAITWINEFVK----L--GGDQLVPYYADILGAILPCISDKEE-------------------- 251 (666)
Q Consensus 198 I~iLl~~~~s~d~~irl~Al~WL~~~i~----l--~~~~l~pylp~lL~~LL~~Lsd~~~-------------------- 251 (666)
++.++.+...+|+++...|++++..+.+ . ....+.|+++++++.+++.|.++++
T Consensus 346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d 425 (1049)
T 3m1i_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1049)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccch
Confidence 7888888888888999999986666665 1 2334678999999999999875321
Q ss_pred --HHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChHHHh-hhhHHHHHHHH
Q 005975 252 --KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLL 326 (666)
Q Consensus 252 --eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~i~-~~l~~l~p~LL 326 (666)
+.|..+.++...+.....+ .-+..+.+.+.+.+. +.+|..|++++..++.+++++.+... ++++.+++.++
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~----~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVI----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHH----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 2354555555555433211 002344556666665 46799999999999999998877654 55889999887
Q ss_pred HhcC-----CCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC
Q 005975 327 KALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (666)
Q Consensus 327 ~~Ls-----D~s~eVv~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~ 388 (666)
.... |+.+.|+..++|++++++ .+.+++..++..++..+.+..+-++.++..-++++|...+
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7433 345566667999999998 3567899999999998887677778888888888887543
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.29 E-value=1.4e-09 Score=122.03 Aligned_cols=346 Identities=13% Similarity=0.052 Sum_probs=231.7
Q ss_pred HHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc----cccHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchh
Q 005975 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD----QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDID 148 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~----~f~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~~~ 148 (666)
++.+.+.+.+.|+.++-.| ..+-+++ ..+.+ ..--.-.||.|.+.+. +.+|.++..++..|.++.+-....
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklL---s~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLL---SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH---cCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 5566666777787776655 4444432 22221 1111346899999996 567999999999999998765443
Q ss_pred hh-hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCCCCH-----HHHHHHHHHHH
Q 005975 149 ML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDE-----FTRLTAITWIN 221 (666)
Q Consensus 149 Li-~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~~s~d~-----~irl~Al~WL~ 221 (666)
-. -.=...++.|..++.+++.+||..|..+|+.+...-... ..+--...++.|+..+..++. .....+..-+.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 22 122346778888999999999999999999887311000 000012457788888876653 23333444444
Q ss_pred HHHHhc-CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHH
Q 005975 222 EFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEAL 300 (666)
Q Consensus 222 ~~i~l~-~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL 300 (666)
.++.-. +..-.....+++|.+...+.+++++++..|..+...+...-.+....+--..+++.|.+.+.+++..++..|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 444322 1122334678999999999999999999888876655421100000000135678888899999999999999
Q ss_pred HHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH------HHHHHHHhhccccchhhh
Q 005975 301 HWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNSLLE 373 (666)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~------~fm~~LL~lf~~d~~lLe 373 (666)
..++.++.+.+....... .+.++.|...|++++++|+..++|+|+.|+.+..... .++..|+.++.+...-.+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 999999887765433332 3578889999999999999999999999996433322 256677787877766666
Q ss_pred hHHHHHHHHHhccCChHHH--------HHHHHHhhcccCChHHHHHHHHHHHHHhccch
Q 005975 374 KRGALIIRRLCVLLDAERV--------YRELSTILEGEADLDFACTMVQALNLILLTSS 424 (666)
Q Consensus 374 ~Rg~~IIR~Lc~~L~~E~I--------y~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~ 424 (666)
..+...|.++|..-+.|.+ ...|.+.|. ..|.+.+......|.+||-.++
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhH
Confidence 6677789999887666543 445666664 4788888888999988885443
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.28 E-value=1.1e-08 Score=113.07 Aligned_cols=343 Identities=12% Similarity=0.076 Sum_probs=225.3
Q ss_pred HHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCch--h
Q 005975 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI--D 148 (666)
Q Consensus 73 eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~--~ 148 (666)
..++.|.+++.+.++.||..| ..|..+.++--....-+..+..+|.|.+.+.. .++.+|..++..+..+...++. .
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 357778888889999998888 77777654221100011123578888888865 5899999999999988654331 1
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~-~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~ 227 (666)
+.. ...++.|.+++.+++++|+..|..+|..+...-.... .+--...++.|+..+.++++.++..+..-+..+..-.
T Consensus 97 i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 97 IFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 222 2578888999999999999999999999876421100 0012568999999999999888887766665554311
Q ss_pred Cc---ccccchHhHHHHHhhhhcCCc-HHHHHHHHHHHHHHHHhhCCCCCCCC-h--HhHHHHHHHhcCCCcHHHHHHHH
Q 005975 228 GD---QLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFD-V--GPILSIATRQLSSEWEATRIEAL 300 (666)
Q Consensus 228 ~~---~l~pylp~lL~~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~~~~~~d-l--~~il~~L~~~L~~~~~~tR~aaL 300 (666)
++ .+. -.+.++.++..+.+.+ +..+..+..+...+. .. +...+ + ...++.|...+.+.+..+|..++
T Consensus 175 ~~~~~~i~--~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~---~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 175 QESKLIIL--ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS---VC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHHHHHHH--HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---TS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHHHHHH--HCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh---cC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 11 111 1234566666666444 445555555543332 11 11000 0 25678888888888888999998
Q ss_pred HHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc----hHH--HHHHHHHhhccc--cchhh
Q 005975 301 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ----HFR--QLVVFLVHNFRV--DNSLL 372 (666)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~----~F~--~fm~~LL~lf~~--d~~lL 372 (666)
.-+..+....+.. ....+.+|.|++.|.+++++|+..++++|+.++.+.. .+. ..+..|++++.+ ++.-+
T Consensus 249 ~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v 326 (529)
T 1jdh_A 249 WTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326 (529)
T ss_dssp HHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHH
Confidence 8888888765442 3456899999999999999999999999999996432 121 146677777754 22445
Q ss_pred hhHHHHHHHHHhccCCh-H---------HHHHHHHHhhcccCChHHHHHHHHHHHHHhccchh
Q 005975 373 EKRGALIIRRLCVLLDA-E---------RVYRELSTILEGEADLDFACTMVQALNLILLTSSE 425 (666)
Q Consensus 373 e~Rg~~IIR~Lc~~L~~-E---------~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~E 425 (666)
...+-..+++|+..-+. + .....|...|..+.+.......+.+|.++....+.
T Consensus 327 ~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 55566688888765322 1 23456666776655556666777888777755443
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.28 E-value=1.7e-10 Score=112.11 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=154.7
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~ 191 (666)
-+...|.+.+.+.+.|+.+|..++.++..+.. +..++.|.+++.|+++.||..|..+|+.+-.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45667888899999999999999999987653 3567788889999999999999888876531
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCC
Q 005975 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (666)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (666)
+..++.|+..+.++++.+|..|+..+..+- . +..++.+...+.++++++|..|..+.+.+- +
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT----C-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C-
Confidence 356788889999999999999999887642 2 467888888999999999999998876642 1
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
...++.|...+.++++.+|.+|+..|+.+. .+..++.|...+.|+++.|+..+.+.|+++.
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999882 2457788888889999999999999998875
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.27 E-value=2e-09 Score=126.44 Aligned_cols=395 Identities=11% Similarity=0.052 Sum_probs=272.9
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc-
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE- 106 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv--~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e- 106 (666)
+..+|+++..++.++..++..|++++.+++.. +|..+... .+ +.|..++.+.+..+|..| ..|-++-.+--++
T Consensus 289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~--gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~ 365 (810)
T 3now_A 289 EGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ--GV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDA 365 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHH--HH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTT
T ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHc--Cc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCc
Confidence 46889999999999999999999999997532 33444432 34 888888888888899877 5555543211111
Q ss_pred ----cccccHhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005975 107 ----SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 107 ----~~~f~L~~fIPlL~eri~~~--np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
-++-+++.++|.+...+... ++.+|..+++.|..+..-++.- -+..-..+++.|+.++..+++.+...|..+|
T Consensus 366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L 445 (810)
T 3now_A 366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445 (810)
T ss_dssp SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHH
Confidence 12234778899999999887 8999999999999997766533 2233467889999999888899999998988
Q ss_pred HHHHHHhhcC-----------------CC--C----C-H---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005975 180 WEFLQEIKNS-----------------PS--V----D-Y---------GRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 180 ~~fL~eI~~~-----------------~~--~----d-~---------~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l 226 (666)
..+...-... +. . + . ...+|.|+..+.++++.+|..|...|..+..-
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 8887522100 00 0 0 0 14789999999999999999999999887642
Q ss_pred cCcccccc--hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC---hHhHHHHHHHhcCCC-cHHHHHHHH
Q 005975 227 GGDQLVPY--YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSE-WEATRIEAL 300 (666)
Q Consensus 227 ~~~~l~py--lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L~~~-~~~tR~aaL 300 (666)
...... =...+|.|+..+....++.|..|..+...+..... +...++ ....++.|.+.+.++ +...+..|+
T Consensus 526 --~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 526 --KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp --HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred --HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 112222 23467888888888888999999888877654321 101111 134678888888754 445567788
Q ss_pred HHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHH------HHHHHHhhccccchhhh
Q 005975 301 HWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQ------LVVFLVHNFRVDNSLLE 373 (666)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~------fm~~LL~lf~~d~~lLe 373 (666)
..|..|+...++.-.... .+.+|.|...|.++++.|+..++++++.++.++..... .+..|+.++..+..-.+
T Consensus 603 ~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq 682 (810)
T 3now_A 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETA 682 (810)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHH
Confidence 888888877543222222 25789999999999999999999999999966544444 44567777776666566
Q ss_pred hHHHHHHHHHhccCC--h------HHHHHHHHHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005975 374 KRGALIIRRLCVLLD--A------ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (666)
Q Consensus 374 ~Rg~~IIR~Lc~~L~--~------E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (666)
..+.-.+.+|+..-+ . +.....|-..|. ..|.+.-...+-.+.++.-.++| .++.+.+
T Consensus 683 ~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~-s~d~~vq~~A~~aL~NL~~~s~e---~~~~l~e 748 (810)
T 3now_A 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIA-NPSPAVQHRGIVIILNMINAGEE---IAKKLFE 748 (810)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHTTCHH---HHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHhCCHH---HHHHHHH
Confidence 666677888876311 1 234445555554 46777777788888777765554 3455543
No 54
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.27 E-value=2e-09 Score=129.00 Aligned_cols=351 Identities=11% Similarity=0.072 Sum_probs=231.3
Q ss_pred HhhhhhHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHh------------cchhhhhHHHHHHHHHHhhc---CC--
Q 005975 28 TILQQIVPPVLNSFS-----DQDSRVRYYACEALYNIAKVV------------RGDFIIFFNQIFDALCKLSA---DS-- 85 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~-----D~d~rVR~~A~eaL~nI~Kv~------------r~~il~~f~eIfd~L~kl~~---D~-- 85 (666)
.++..+++.++.+.. ..+.+|+..|++.++++++.. .....+++..+++.++.-+. |.
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~ 423 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSL 423 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 456667777777764 357889999999999987622 12234788888898886552 11
Q ss_pred ---ch-------hHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCchhh
Q 005975 86 ---DA-------NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-----LNPYVRQFLVGWITVLDSVPDIDM 149 (666)
Q Consensus 86 ---d~-------~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~-----~np~vR~~alswL~~L~svp~~~L 149 (666)
|+ +.|.++ +.| +++..-.+..-++.+++.+.+.+.. .+|+.|..++-.+..+...+..+.
T Consensus 424 ~~~d~~e~~~f~~~R~~~~~~l----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~ 499 (971)
T 2x1g_F 424 AKWSSDDLECFRCYRQDISDTF----MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE 499 (971)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHH----HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----
T ss_pred cccCHhHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh
Confidence 11 234433 443 3333333333467777777777754 789999999999999887766666
Q ss_pred hhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 150 LGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 150 i~yLp~fL~gLf~lLs-D~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
..++|.+++.+..+.. |+++-||..|+.+++++.+-+...+ ..++.+++.++..+ + +.++..|+..+..|++..+
T Consensus 500 ~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 500 KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 7889999985545442 7899999999999999998886544 46899999999988 3 6688999999999999888
Q ss_pred cccccchHhHHHHHhhhhcC--CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHH----HHHHHhcCCC--cHHHHHHHH
Q 005975 229 DQLVPYYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPIL----SIATRQLSSE--WEATRIEAL 300 (666)
Q Consensus 229 ~~l~pylp~lL~~LL~~Lsd--~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il----~~L~~~L~~~--~~~tR~aaL 300 (666)
..+.||++.++..++..+.. .+.+.+..+.++...+...+......-.+..++ +.+.+..... +.+.+....
T Consensus 576 ~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 576 LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 89999999999999999986 356778888888777766543100011123333 3343333332 344455555
Q ss_pred HHHHHHHhhC----------------hHHHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh-----ccchHHHH
Q 005975 301 HWISTLLNRH----------------RTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK-----DLQHFRQL 357 (666)
Q Consensus 301 ~WL~~L~~~~----------------p~~i~~~l~~l~p~LL~~LsD--~s~eVv~~~l~lLa~Is~-----~~~~F~~f 357 (666)
.++..+.... ++.+.++.+.++|.+...+.+ .+++|++.+++++++++. -.+|+.++
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~ 735 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL 735 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence 5555443321 234677888899988888754 367999999999999773 24577778
Q ss_pred HHHHHhhccccchhhhhHHHHHHHHHhccCCh
Q 005975 358 VVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (666)
Q Consensus 358 m~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (666)
+..++..|.+.+- .+ .--.+..++..++.
T Consensus 736 ~~~l~~~~~~~~~--~~-~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 736 CLFIVASFQTRCC--AP-TLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHHHHCC--CC--HH-HHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcCCc--hH-HHHHHHHHHHHhCC
Confidence 8888877765432 11 11244455555554
No 55
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.24 E-value=1e-10 Score=116.08 Aligned_cols=236 Identities=15% Similarity=0.107 Sum_probs=170.7
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~-f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f 110 (666)
.+|.++..+.++++.+|..|+.++.++++......... -..+++.|.+++.++++.|+..| .+|..+..+-......+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 47889999999999999999999999975422111111 12578899999999999998888 67776654211111112
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
.-...+|.|.+.+.+.++.+|..++..+..+....+.. -...-...++.|.+++.+++++||..|+.+|..+...-...
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 22356899999999999999999999999998543321 11122467888999999999999999999999887411100
Q ss_pred -CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHh
Q 005975 190 -PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 190 -~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py-lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (666)
..+--...++.|+..+.++++.+|..|+.-+..+....+...... -.++++.++..+.++++++|..|..+...+...
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 000114588999999999999999999999888775332211111 256789999999999999999999998887765
Q ss_pred h
Q 005975 268 K 268 (666)
Q Consensus 268 i 268 (666)
.
T Consensus 243 ~ 243 (252)
T 4hxt_A 243 G 243 (252)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.18 E-value=2.3e-10 Score=113.48 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=174.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc-CCCCC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SPSVD 193 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL-p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~-~~~~d 193 (666)
+|.|.+.+.+.++.+|..++..+..+..-.+....... ...++.|.+++.+++++||..|..+|..+...-.. ...+-
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 78889999999999999999999998776552221111 25788899999999999999999999888742000 00000
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc-cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCC
Q 005975 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~-pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
-...++.++..+.++++.+|..|+.-+..+....+..-. -.-.+.++.++..+.++++++|..|..+...+...-.+..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 135789999999999999999999988877753322111 0124678999999999999999999888776642100000
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 273 ~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
..+--..+++.|...+.++++.+|..|+.-|..+....++...... .+.++.|++.+.+++++|+..++++|+.++.
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 0000135788899999999999999999999999987666554433 4689999999999999999999999999995
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.13 E-value=7.8e-10 Score=110.55 Aligned_cols=233 Identities=18% Similarity=0.120 Sum_probs=167.5
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~-~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
+..+.+...+.+.|+.+|..||.++.++.......... .=..+++.|.+++.++++.|+..| .+|..+..+-......
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34678888889999999999999998875431111111 112578899999999999999888 6777665421111111
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
.--...+|.|.+.+.+.++.+|..++..+.++...++.. -...-...++.|.+++.|++++||..|+.+|..+...-..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 112347899999999999999999999999998776654 2223345888999999999999999999999988741100
Q ss_pred C-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc-hHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 189 S-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 189 ~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py-lp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
. ..+--...++.|+..+.++++.+|..|+.-+..++...+.....+ -.+.++.+...+.+.++++|..|..+...+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 0 000014578999999999999999999999988875433222222 235889999999999999999998876543
No 58
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.12 E-value=2.3e-08 Score=120.13 Aligned_cols=311 Identities=10% Similarity=0.104 Sum_probs=213.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHh---c-c--------hhhhhHH-HHHHHHHHhhcCC---chhHHHHH-HHHHHHHHHhhc
Q 005975 43 DQDSRVRYYACEALYNIAKVV---R-G--------DFIIFFN-QIFDALCKLSADS---DANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~---r-~--------~il~~f~-eIfd~L~kl~~D~---d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
+++++.|.+|..++..|+... . + .+.+++. .+++. +.|+ .+-||..| ..+.++..++.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~----l~~~~~~~p~vr~~a~~~lg~~~~~~~- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD----LTSNNIPHIILRVDAIKYIYTFRNQLT- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH----HHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH----hcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence 788999999999999997531 1 1 2223322 23333 3556 88999988 78888877652
Q ss_pred ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-----------CchhhhhchHHHHHHHHHhcCCCC---h--
Q 005975 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-----------PDIDMLGFLPDFLDGLFNMLSDSS---H-- 169 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~sv-----------p~~~Li~yLp~fL~gLf~lLsD~~---~-- 169 (666)
.-.+..++|.+..++.+.++.||..++..+..|... ....+.+|++.+++.|++++.... +
T Consensus 491 ---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 491 ---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp ---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 224888999999999999999999999999998764 346689999999999999997651 1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhc----CCC-CHHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHh
Q 005975 170 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA----ASP-DEFTRLTAITWINEFVKL-GGDQLVPYYADILGAIL 243 (666)
Q Consensus 170 eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~----~s~-d~~irl~Al~WL~~~i~l-~~~~l~pylp~lL~~LL 243 (666)
.....+.+++..++...+......++.+++.+...+ +++ +...+..+++-|..++.. +++.+.+|.+.++|.+.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 133566788888888776544445566666554433 333 556676678888887776 55678889999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHH--HhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHH
Q 005975 244 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIAT--RQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI 321 (666)
Q Consensus 244 ~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~--~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l 321 (666)
..+.....+...-+......+++... +..-.+.++++.+. ..+.... .--.....+..+....++.+.+ ++.+
T Consensus 648 ~iL~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~ 722 (960)
T 1wa5_C 648 TVFSEDIQEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPV 722 (960)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHCS--SCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHH
T ss_pred HHHHhhhHhhHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHH-HHHH
Confidence 88876555566666666666666652 22334667777777 5555433 2234556666666666655554 4555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHhhcccc
Q 005975 322 FDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVD 368 (666)
Q Consensus 322 ~p~LL~~LsD~s~eVv~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d 368 (666)
+..+-+.+++..++ ..++++++.|.. =.+|+..++..++..+...
T Consensus 723 l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 723 LGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 55555666666544 678888887773 2578888998888887655
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.11 E-value=2.7e-09 Score=106.58 Aligned_cols=235 Identities=16% Similarity=0.091 Sum_probs=152.8
Q ss_pred HHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-
Q 005975 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF- 152 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y- 152 (666)
|+.+.+++.++++.++..| ..|.+++..--.....+--...+|.|.+.+.+.++.+|..++..+..+..-.+..-...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5666666777888777766 77766544311111122234578999999999999999999999998876332211111
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005975 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (666)
Q Consensus 153 Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~ 232 (666)
=...++.|.+++.+++++||..|..+|..+...- ..+. ..+.+
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------------------------~~~~------~~~~~------- 136 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGG------------------------NEQI------QAVID------- 136 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC------------------------HHHH------HHHHH-------
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC------------------------chHH------HHHHH-------
Confidence 1247888999999999999999999888885311 0110 00000
Q ss_pred cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH
Q 005975 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 233 pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~ 312 (666)
.+.+|.++..+.++++++|..|..+...+...-.+....+--..+++.|.+.+.+++..+|..|+.-|..+....++
T Consensus 137 ---~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 137 ---AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp ---TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred ---CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 13345555555555555555555554443210000000000034677788888888888999999888888877766
Q ss_pred HHhhhhH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 313 EVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 313 ~i~~~l~-~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
......+ +.+|.|++.+.+.+++|+..++++|+.+++
T Consensus 214 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 5544444 589999999999999999999999998764
No 60
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.00 E-value=4.5e-09 Score=102.14 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=138.4
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~-f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
-+...|++...+.++|+.+|..||.+|.++++......... -...++.|.+++.++++.|+..| .+|..++.+-....
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34566788888899999999999999999984322111111 12578899999999999999888 67776643110000
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
...--...+|.|.+.+.+.++.+|..++..+.++..-.+..... .=...++.|.+++.+++++||..|+.+|..+...-
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 11112347899999999999999999999999998644432211 12457899999999999999999999999998421
Q ss_pred hc-CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005975 187 KN-SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (666)
Q Consensus 187 ~~-~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i 224 (666)
.. ...+--...++.|+..+.++++.+|..|+..+..+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 00 000111357899999999999999999998887653
No 61
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.98 E-value=1.6e-07 Score=113.70 Aligned_cols=333 Identities=14% Similarity=0.112 Sum_probs=209.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhc---c---------------
Q 005975 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT---E--------------- 106 (666)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~---e--------------- 106 (666)
.+-+|.-.|.++..|++..- -..|++.++.++.++..++..+..+-..|..+.+++.. +
T Consensus 113 ~~~i~nKLa~~la~I~~~~~---p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~ 189 (1023)
T 4hat_C 113 QKNLINKSDLTLVQILKQEW---PQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMS 189 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHT---TTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhC---hhhchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 35677778888888876432 23466777777776654433222222455555555432 0
Q ss_pred ----------------c-----------------ccccH-----hhhHHHHH-HhhcCCCHHHHHHHHHHHHHhhcC---
Q 005975 107 ----------------S-----------------DQFSI-----EEFIPLLR-ERMNVLNPYVRQFLVGWITVLDSV--- 144 (666)
Q Consensus 107 ----------------~-----------------~~f~L-----~~fIPlL~-eri~~~np~vR~~alswL~~L~sv--- 144 (666)
. .-.++ ..+++.+. ..+ .+|..|..+++++..+.+.
T Consensus 190 ~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~ 267 (1023)
T 4hat_C 190 KEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIP 267 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccC
Confidence 0 00112 23677776 555 4788999999999988763
Q ss_pred Cc---h--hhhhchHHHHHHH--------------HHhcCCCChhHHHHHHHHHHHHHHHhhcCC--CCCHHHHH----H
Q 005975 145 PD---I--DMLGFLPDFLDGL--------------FNMLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMA----E 199 (666)
Q Consensus 145 p~---~--~Li~yLp~fL~gL--------------f~lLsD~~~eVR~~A~~~L~~fL~eI~~~~--~~d~~~iI----~ 199 (666)
++ . .+...++.++..+ +....+.+.++.+.-+..+..|.+.-..-- ..++..++ .
T Consensus 268 ~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~ 347 (1023)
T 4hat_C 268 QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQ 347 (1023)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 12 1 1233333444333 111223345655555566665555432211 12334444 4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH-hc-----CcccccchHhHHHHHhhhhcCCc------H-------------HHH
Q 005975 200 ILVQRAASPDEFTRLTAITWINEFVK-LG-----GDQLVPYYADILGAILPCISDKE------E-------------KIR 254 (666)
Q Consensus 200 iLl~~~~s~d~~irl~Al~WL~~~i~-l~-----~~~l~pylp~lL~~LL~~Lsd~~------~-------------eIR 254 (666)
+|+.+...+|.++-..+++++..+.+ +. ...+.|++.+++++++..|.+++ + +-+
T Consensus 348 ~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~ 427 (1023)
T 4hat_C 348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTI 427 (1023)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGH
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHH
Confidence 88888888899997777775555554 22 23478899999999999998764 1 111
Q ss_pred HHH---HHHHHHHHHhhCCCCCCCC-hHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChHH-HhhhhHHHHHHHHH
Q 005975 255 VVA---RETNEELRAIKADPADGFD-VGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLK 327 (666)
Q Consensus 255 ~~A---~~~n~~L~~~i~~~~~~~d-l~~il~~L~~~L~~--~~~~tR~aaL~WL~~L~~~~p~~-i~~~l~~l~p~LL~ 327 (666)
... .++...+..... .+ +..+++.+.+++.+ ++|..|+|++-.++.++++..++ ..++++.++|.|+.
T Consensus 428 ~~f~~~Rd~L~~l~~l~~-----~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~ 502 (1023)
T 4hat_C 428 QLYKSEREVLVYLTHLNV-----IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD 502 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Confidence 111 122222211111 01 13344556666653 67999999999999999987654 77999999999999
Q ss_pred hcC-----CCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccC
Q 005975 328 ALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (666)
Q Consensus 328 ~Ls-----D~s~eVv~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L 387 (666)
.+. |+...|+..++|++++|+ .+.++|++++..|++.+.++++-++..+.--+++||..-
T Consensus 503 l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 503 LCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 886 456667778999999999 478899999999999997776667777788888888753
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.97 E-value=5.5e-08 Score=107.42 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=194.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f 110 (666)
-+|+++..+..+|+.+|..|+.++.++++.-.. .....-...++.|.+++.++++.++..| .+|..+..+--......
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 368888999999999999999999998742111 1011123568888999988888888777 77777664200000011
Q ss_pred cHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhc--------CCC--------ChhHH
Q 005975 111 SIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNML--------SDS--------SHEIR 172 (666)
Q Consensus 111 ~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~~~-Li~yLp~fL~gLf~lL--------sD~--------~~eVR 172 (666)
--.--||.|.+.+. +.++.++..++..+.++...+... .+. ...++.|.+++ .++ +.+|.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~--~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI--ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH--HHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH--hccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 11234888888888 789999999999999998764432 122 27788888888 222 45666
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHH-----hc------------
Q 005975 173 QQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAAS------PDEFTRLTAITWINEFVK-----LG------------ 227 (666)
Q Consensus 173 ~~A~~~L~~fL~eI~~~~--~~d~~~iI~iLl~~~~s------~d~~irl~Al~WL~~~i~-----l~------------ 227 (666)
+.|..+|..+... .... -.+.+..++.|+..+++ ++..++..|+..+..+.. .+
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 6888888887642 1100 01223566666665543 333344444433333320 00
Q ss_pred ---------------------------------Cccc-ccchHhHHHHHhhhhcCC-cHHHHHHHHHHHHHHHHhhCCCC
Q 005975 228 ---------------------------------GDQL-VPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPA 272 (666)
Q Consensus 228 ---------------------------------~~~l-~pylp~lL~~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~~~ 272 (666)
+... .=+-++.++.++..|..+ ++++++.|..+...+..--.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 0000 012356677777777644 58888887777655421100000
Q ss_pred C-----CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC------HHHHHHHH
Q 005975 273 D-----GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS------DEVVLLVL 341 (666)
Q Consensus 273 ~-----~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s------~eVv~~~l 341 (666)
. .+.-...++.|.+.+.+++..+|..|...|..+... ++.-.-.-.+.+|.|+..|...+ ++|+..++
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 0 000134578899999999999999999666667653 32222223468999999998763 47888999
Q ss_pred HHHHHHhhcc
Q 005975 342 EVHACIAKDL 351 (666)
Q Consensus 342 ~lLa~Is~~~ 351 (666)
+.++.|..++
T Consensus 399 ~~l~ni~~~~ 408 (457)
T 1xm9_A 399 YTVRNLMASQ 408 (457)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhcC
Confidence 9999998543
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.96 E-value=4e-07 Score=103.62 Aligned_cols=316 Identities=14% Similarity=0.093 Sum_probs=204.4
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHH-hhc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD-IVT 105 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~---r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKD-Iv~ 105 (666)
+.-+|+++..+...|..++..|+.+|.+++... +..+. -...++.|.+++.++++.|+..| .+|..+... --.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR--KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 346899999999999999999999999998521 11221 12457889999999999998888 777776531 000
Q ss_pred ccccccHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-----------------C-
Q 005975 106 ESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-----------------D- 166 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLs-----------------D- 166 (666)
.....--.--||.|.+.+.. .++.++..+...+.+|...+...... ...-++.|.+++. |
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I-~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH-HHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH-HhccHHHHHHHHhccccccccccccccccccc
Confidence 00011112347777777775 67899999999999998765432211 1344666666541 2
Q ss_pred CChhHHHHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhc-----C-ccc-
Q 005975 167 SSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEILVQRAA------SPDEFTRLTAITWINEFVKLG-----G-DQL- 231 (666)
Q Consensus 167 ~~~eVR~~A~~~L~~fL~eI~~--~~~~d~~~iI~iLl~~~~------s~d~~irl~Al~WL~~~i~l~-----~-~~l- 231 (666)
++.+|+..|..||..+...=.+ ..-++.+.+++.|+..++ .++...+..|+.-|..+..-. . ..+
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2578999998988888521000 000122445555555443 245566666766665544321 0 000
Q ss_pred -----------------cc--chHhHHHHHhhhhc-CCcHHHHHHHHHHHHHHHHhhCCCC----CCCChHhHHHHHHHh
Q 005975 232 -----------------VP--YYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPA----DGFDVGPILSIATRQ 287 (666)
Q Consensus 232 -----------------~p--ylp~lL~~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~----~~~dl~~il~~L~~~ 287 (666)
+. +-|..++.++..+. ...+++++.|..+...|...-...+ ..+.-...++.|.+.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 11 23677888888885 3568999999888776642100000 001125668999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHhhc
Q 005975 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--------SDEVVLLVLEVHACIAKD 350 (666)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~--------s~eVv~~~l~lLa~Is~~ 350 (666)
+.+.+..++.+|...|..+....... ...-.+.+|.|+..|.+. +++++..+|++|..|+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998865322 122457899999999876 578999999999999753
No 64
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.6e-08 Score=104.08 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=133.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhcch-----hhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccccccc
Q 005975 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGD-----FIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 37 VL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~-----il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~ 111 (666)
+-.-+.+++|+.|..|.+.++.+....... ....|..+.+.+.+.+.|+...|...|
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~a------------------ 75 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQA------------------ 75 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHH------------------
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHH------------------
Confidence 567889999999999999998876533211 111223333444455555555554444
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc------hhhhhchHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHH
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD------IDMLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~------~~Li~yLp~fL~gLf-~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
+..+..+....+ .....+.+.++++|+ +.++|+.+.+|..|..++..+..
T Consensus 76 -----------------------l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 76 -----------------------IVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp -----------------------HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 333333332211 223456777888887 56999999999999888888775
Q ss_pred HhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc---ccchHhHHHHHhhhhcCCcHHHHHHHHHHH
Q 005975 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL---VPYYADILGAILPCISDKEEKIRVVARETN 261 (666)
Q Consensus 185 eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l---~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n 261 (666)
.. .....+++.++..+.+.++.+|..++.||..++.-.|... .++++.+++.+.+++.|++++||..|.++.
T Consensus 133 ~~-----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 133 LD-----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp TS-----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred hc-----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 22 3456788999999999999999999999999998755443 346788889999999999999999999999
Q ss_pred HHHHHhhCC
Q 005975 262 EELRAIKAD 270 (666)
Q Consensus 262 ~~L~~~i~~ 270 (666)
.++++.+++
T Consensus 208 ~~ly~~~G~ 216 (278)
T 4ffb_C 208 VEIYKVTGN 216 (278)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCc
Confidence 999988764
No 65
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.89 E-value=4.5e-07 Score=111.65 Aligned_cols=352 Identities=11% Similarity=0.096 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccc--------------
Q 005975 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-------------- 108 (666)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~-------------- 108 (666)
..+.||...|.++..|++.- ....|+++++.|..++.. +++.+.++ ..|..+++|+.....
T Consensus 108 ~~~~vr~kla~~la~Ia~~d---~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKRE---WPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHH---STTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHh---CcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 56999999999998888742 224578888888877765 34555556 667776666432100
Q ss_pred ---------------c--------------------------------------ccH-------hhhHHHHHHhhcCCCH
Q 005975 109 ---------------Q--------------------------------------FSI-------EEFIPLLRERMNVLNP 128 (666)
Q Consensus 109 ---------------~--------------------------------------f~L-------~~fIPlL~eri~~~np 128 (666)
. .++ ..+++.+...+ .++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l--~~~ 261 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL--NEQ 261 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG--GCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc--CCH
Confidence 0 000 12444444333 367
Q ss_pred HHHHHHHHHHHHhhcCCc--h---hhhhch-HHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHHhhc------
Q 005975 129 YVRQFLVGWITVLDSVPD--I---DMLGFL-PDFLDGLFNML--------SDSSHEIRQQADSALWEFLQEIKN------ 188 (666)
Q Consensus 129 ~vR~~alswL~~L~svp~--~---~Li~yL-p~fL~gLf~lL--------sD~~~eVR~~A~~~L~~fL~eI~~------ 188 (666)
.+|..+++++..+.+... . .++..+ +.++..++..+ .|.+.++++..++++..+...+..
T Consensus 262 ~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~ 341 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADS 341 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999987542 3 344555 55567777765 233467888877887777655442
Q ss_pred --CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc----CcccccchHhHHHHH---hhhhcCCcHH-------
Q 005975 189 --SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG----GDQLVPYYADILGAI---LPCISDKEEK------- 252 (666)
Q Consensus 189 --~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~----~~~l~pylp~lL~~L---L~~Lsd~~~e------- 252 (666)
....++..+++.++.++.+++..+-..++.++..+++-. ...+.+|++++++++ +..+.|++.+
T Consensus 342 ~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~ 421 (1204)
T 3a6p_A 342 DVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEY 421 (1204)
T ss_dssp SCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHH
T ss_pred cccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhh
Confidence 234578999999999999999999888886444455432 234678999999999 7777765311
Q ss_pred -------HHH------HHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC-------------------------CCcHH
Q 005975 253 -------IRV------VARETNEELRAIKADPADGFDVGPILSIATRQLS-------------------------SEWEA 294 (666)
Q Consensus 253 -------IR~------~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~-------------------------~~~~~ 294 (666)
..+ ...+....+++.+.......-+.-+.+.+...+. ++.|.
T Consensus 422 ~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 501 (1204)
T 3a6p_A 422 SRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFV 501 (1204)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHH
Confidence 000 0111112222222110000001222233433332 22344
Q ss_pred HHHHHHHHHHHHHhhChHHH-hhhhH-HHHHHHHHhc---CCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhc
Q 005975 295 TRIEALHWISTLLNRHRTEV-LHFLN-DIFDTLLKAL---SDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNF 365 (666)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~i-~~~l~-~l~p~LL~~L---sD~s~eVv~~~l~lLa~Is----~~~~~F~~fm~~LL~lf 365 (666)
..++...-+..+.+++.... .++++ .++|.|+..| +.++|.++...+.+|++++ .+.+++.+++..++..+
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l 581 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV 581 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence 56666656666666654333 24444 2455555543 5568889889999988887 36788999999999877
Q ss_pred cc------------cchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhc
Q 005975 366 RV------------DNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILE 401 (666)
Q Consensus 366 ~~------------d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~ 401 (666)
.. ..+-+..++..-+++||...+. +.|+..+..++.
T Consensus 582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 54 3445677777788888887754 456666666554
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.89 E-value=1.3e-06 Score=105.44 Aligned_cols=319 Identities=14% Similarity=0.078 Sum_probs=217.1
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---------chhhhhHHHHHHHHHHhh-cCCc--h-------
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------GDFIIFFNQIFDALCKLS-ADSD--A------- 87 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r---------~~il~~f~eIfd~L~kl~-~D~d--~------- 87 (666)
..++..+++.++.|+++++..|-..+++-++......+ ....+++..+++++++-+ -|.+ .
T Consensus 327 ~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~e 406 (980)
T 3ibv_A 327 SFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSE 406 (980)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchh
Confidence 36788899999999999999999999998888764322 122367788888888533 2111 1
Q ss_pred ---hHHHHH-HHHHHHHHHhhcccc-cccHh----hhHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCch------hh
Q 005975 88 ---NVQSAA-HLLDRLVKDIVTESD-QFSIE----EFIPLLRERMN---VLNPYVRQFLVGWITVLDSVPDI------DM 149 (666)
Q Consensus 88 ---~Vr~gA-~~LdrLlKDIv~e~~-~f~L~----~fIPlL~eri~---~~np~vR~~alswL~~L~svp~~------~L 149 (666)
..++ - ..+. .++|++.-.+ ...++ .+.+.+.+.+. ..+|+.+..++-.++.+...... +.
T Consensus 407 d~~~F~e-~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~ 484 (980)
T 3ibv_A 407 EEAEFQE-MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEV 484 (980)
T ss_dssp THHHHHH-HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSS
T ss_pred HHHHHHH-HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcc
Confidence 0111 0 1223 3444443221 22244 56666666663 35689999999999988764332 12
Q ss_pred hhchHHHHHHHHHhcC-----CCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH--hcCCCCHHHHHHHHHHHHH
Q 005975 150 LGFLPDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ--RAASPDEFTRLTAITWINE 222 (666)
Q Consensus 150 i~yLp~fL~gLf~lLs-----D~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~--~~~s~d~~irl~Al~WL~~ 222 (666)
..++|.+++-+.+++. |+++-||..++.+++++-+-+...+ -.++.++++++. .+.++++.+|..|..-+..
T Consensus 485 ~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~ 563 (980)
T 3ibv_A 485 DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYR 563 (980)
T ss_dssp SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHhccccccCCChhHHHHHHHHHHH
Confidence 3578888887777765 9999999999999999998886644 357999999999 8888999999999999999
Q ss_pred HHHhcCcccccchHhHHHHHhhhhcCC-----cHH----------------HHHHHHHHHHHHHHhhCCCCCC--CChHh
Q 005975 223 FVKLGGDQLVPYYADILGAILPCISDK-----EEK----------------IRVVARETNEELRAIKADPADG--FDVGP 279 (666)
Q Consensus 223 ~i~l~~~~l~pylp~lL~~LL~~Lsd~-----~~e----------------IR~~A~~~n~~L~~~i~~~~~~--~dl~~ 279 (666)
|++..+..+.||++.++..+-+.+... +++ -+--.-++.+.+......+.+. ..++.
T Consensus 564 f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ 643 (980)
T 3ibv_A 564 FVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS 643 (980)
T ss_dssp HHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999888732 111 1111334444555444321111 11233
Q ss_pred HHH----HHHHhcCCC----cHHHHH-HHHHHHHHHHhhChHH------HhhhhHHHHHHHHHhcC--CCCHHHHHHHHH
Q 005975 280 ILS----IATRQLSSE----WEATRI-EALHWISTLLNRHRTE------VLHFLNDIFDTLLKALS--DPSDEVVLLVLE 342 (666)
Q Consensus 280 il~----~L~~~L~~~----~~~tR~-aaL~WL~~L~~~~p~~------i~~~l~~l~p~LL~~Ls--D~s~eVv~~~l~ 342 (666)
+++ .+...+... +...++ ..+.|++.++++.++. +...+.+..+.++..|+ ..+..||..++.
T Consensus 644 ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~ 723 (980)
T 3ibv_A 644 LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRF 723 (980)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333 344344321 222233 5678999999987432 66777888888888887 567899999999
Q ss_pred HHHHHh
Q 005975 343 VHACIA 348 (666)
Q Consensus 343 lLa~Is 348 (666)
.+.++.
T Consensus 724 ~~~r~i 729 (980)
T 3ibv_A 724 TSGRII 729 (980)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999887
No 67
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.5e-08 Score=102.62 Aligned_cols=191 Identities=12% Similarity=0.064 Sum_probs=142.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CC----chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDS-VP----DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~s-vp----~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
+| |.+++.+.||..|.-+++.+..+.. .+ +.+....+..+.+++.+++.|+|..|...+.+++..++......
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~- 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS- 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh-
Confidence 44 6799999999999999999886543 32 23344456677778888999999999999988888887533210
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh-hhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP-CISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~-~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
...+.....+.+.++|.++. +++++.+.+|..|.++.-.++....
T Consensus 90 ----------------------------------~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 90 ----------------------------------SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred ----------------------------------hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 00001123456777887774 6899999999888887655554322
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHH---hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005975 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV---LHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i---~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~ 346 (666)
....+++.+...+.+.++.+|.+++.||..+...++... .+.++.+++.+.+.|+|+++.||..+..++..
T Consensus 136 ------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 136 ------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp ------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 246788888899999999999999999999998865543 34677788899999999999999999998877
Q ss_pred Hh
Q 005975 347 IA 348 (666)
Q Consensus 347 Is 348 (666)
+-
T Consensus 210 ly 211 (278)
T 4ffb_C 210 IY 211 (278)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 68
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.80 E-value=1.3e-08 Score=98.99 Aligned_cols=195 Identities=17% Similarity=0.089 Sum_probs=141.9
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005975 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (666)
Q Consensus 155 ~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~p 233 (666)
...+.|.+++.+++++||..|+.+|..+...-... ..+--...++.|+..+.++++.+|..|+.-+..+..-.+..-..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34456778899999999999999999887311000 00001357899999999999999999998888766432211111
Q ss_pred -chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH
Q 005975 234 -YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 234 -ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~ 312 (666)
.-.+.+|.++..|.++++++|..|..+...+...-.+....+--...++.|.+.+.+++..+|..|+..|..+....++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 1245789999999999999999998887766421000000000135788899999999999999999999999988666
Q ss_pred HHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 313 EVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 313 ~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
...... .+.++.|++.+.+++++|+..+++.|..+++
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 544433 3689999999999999999999999999874
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.76 E-value=4.4e-07 Score=100.55 Aligned_cols=317 Identities=13% Similarity=0.108 Sum_probs=197.9
Q ss_pred hhHHHHHhhcCCC------------CHHHHHHHHHHHHHHHHHhcc--------hhhhhHHHH---HHHHHHhhcCC---
Q 005975 32 QIVPPVLNSFSDQ------------DSRVRYYACEALYNIAKVVRG--------DFIIFFNQI---FDALCKLSADS--- 85 (666)
Q Consensus 32 ~Il~pVL~~~~D~------------d~rVR~~A~eaL~nI~Kv~r~--------~il~~f~eI---fd~L~kl~~D~--- 85 (666)
-.+|.++..+.+. ++.+|..|..+|.||+..-.+ .+++..+.+ -+.+.+++..+
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 3567777777653 369999999999999864321 122222221 12223333322
Q ss_pred -c--h-hHHH--------HHHHHHHH-----HHHhhcccccccHhhhHHHHHHhh-------cCCCHHHHHHHHHHHHHh
Q 005975 86 -D--A-NVQS--------AAHLLDRL-----VKDIVTESDQFSIEEFIPLLRERM-------NVLNPYVRQFLVGWITVL 141 (666)
Q Consensus 86 -d--~-~Vr~--------gA~~LdrL-----lKDIv~e~~~f~L~~fIPlL~eri-------~~~np~vR~~alswL~~L 141 (666)
| . -|++ |+.+|.++ .++.+.+.+ .++.++.+|..-. ...++.++..+...|.++
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G--~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG--GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT--HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC--CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 1 1 1432 33555443 233333332 2444444443211 113578899999999999
Q ss_pred hcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH--hhcCCCCCHHHHHHHHHHh-cCCCCHHHHHHH
Q 005975 142 DSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEILVQR-AASPDEFTRLTA 216 (666)
Q Consensus 142 ~svp~~--~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e--I~~~~~~d~~~iI~iLl~~-~~s~d~~irl~A 216 (666)
..-.+. ..+.-....++.|.++|..++++|+..|+.+|..+... -.+...+--...|+.|+.. ..+.++.++..|
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 865432 23323466788999999999999999999999877420 0000001113467888886 456788888888
Q ss_pred HHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCcH----HHHHHHHHHHHHHHHhhCCCCCC---CChHhHHHHHHHh
Q 005975 217 ITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG---FDVGPILSIATRQ 287 (666)
Q Consensus 217 l~WL~~~i~l~~~~l~py--lp~lL~~LL~~Lsd~~~----eIR~~A~~~n~~L~~~i~~~~~~---~dl~~il~~L~~~ 287 (666)
+.-+..+....++.=... -...+|.|...+.+..+ ++++.|..+...+...+....+. +--...++.|.+.
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 887777766332211111 25678888888876543 47887777766655422111110 0002457889999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005975 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (666)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~ 350 (666)
+.+.+..++..|...|..+....++......+ +.+|.|...|...+++++..+++.|..++.+
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99888999999999999998777666554443 6899999999999999999999999999953
No 70
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.75 E-value=1.3e-06 Score=89.83 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=133.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccccc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~ 111 (666)
+-+-+...+.++|.+.|..|++.|.........+.....+-+|.-+.--+.|+..+|-..+ +.|..++.-+....
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~---- 122 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE---- 122 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc----
Confidence 4566677888899999999999998876544444444444445544433458888777666 55444433222111
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~y-Lp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
..+.+| ...|+|.|..=++|+...||..+.+++..+.+..
T Consensus 123 -----------------------------------y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---- 163 (266)
T 2of3_A 123 -----------------------------------TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---- 163 (266)
T ss_dssp -----------------------------------CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----
T ss_pred -----------------------------------ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC----
Confidence 012222 2334444454668888888888877776655422
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHH---HHHhhhhcCCcHHHHHHHHHHHHHHHHh
Q 005975 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL---GAILPCISDKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL---~~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (666)
-...+.+++++.+.+++..+|..++.|+..+++..|.. | .+.+ |.+.++++|.+.++|++|..|..++.+.
T Consensus 164 --~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 164 --GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp --CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34668889999999999999999999999999987765 2 5677 9999999999999999999999998888
Q ss_pred hCC
Q 005975 268 KAD 270 (666)
Q Consensus 268 i~~ 270 (666)
+++
T Consensus 238 ~Gd 240 (266)
T 2of3_A 238 EGD 240 (266)
T ss_dssp HTT
T ss_pred hhH
Confidence 765
No 71
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.72 E-value=8.4e-05 Score=90.03 Aligned_cols=296 Identities=10% Similarity=0.030 Sum_probs=192.8
Q ss_pred HHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh------cchhhhhHHHHHHHHHHhhc---CC-----------
Q 005975 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV------RGDFIIFFNQIFDALCKLSA---DS----------- 85 (666)
Q Consensus 26 ~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~------r~~il~~f~eIfd~L~kl~~---D~----------- 85 (666)
..+++..+++-++.+...+|..|+..|++-++.+++.. +....+++..+.+.+...+. |.
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~ 417 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEE
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcch
Confidence 35567778888999888889999999999998887721 23334777888888775431 10
Q ss_pred -----ch---hHHH-HHHHHHHHHHHhhcccccccHhhhHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhh-hhch
Q 005975 86 -----DA---NVQS-AAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITVLDSVPDIDM-LGFL 153 (666)
Q Consensus 86 -----d~---~Vr~-gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~--~~np~vR~~alswL~~L~svp~~~L-i~yL 153 (666)
|. +.+. +++.|+.++.- .+..-++.+.+.+.+.+. ..+|+.|..++-.+..+........ -.++
T Consensus 418 r~~~~d~d~~~~~~~~~~~L~~l~~~----~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l 493 (1049)
T 3m1i_C 418 REFVKESDTIQLYKSEREVLVYLTHL----NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV 493 (1049)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH
Confidence 00 2233 33666666531 122235666777777765 4789999999888887755443332 3468
Q ss_pred HHHHHHHHHhcC-----CCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 154 PDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 154 p~fL~gLf~lLs-----D~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
|.+++.|..+.. |+++-||..++.+++++.+-+...+ ..++.+++.++..+.++++.+|..|+..+..|++.++
T Consensus 494 ~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 494 VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 888887776542 4667777678899999887766532 2478899999999999999999999999999999877
Q ss_pred cccc--------cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCC-CCCChHhHHHHHHHhcC--------CC
Q 005975 229 DQLV--------PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA-DGFDVGPILSIATRQLS--------SE 291 (666)
Q Consensus 229 ~~l~--------pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~-~~~dl~~il~~L~~~L~--------~~ 291 (666)
..+. ||++.++..+...+...+.+-.....++.+.+.....+.. ..-.++.+++.+.+.+. +.
T Consensus 573 ~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 652 (1049)
T 3m1i_C 573 YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP 652 (1049)
T ss_dssp HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCG
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 6665 9999999999998887665555555566555554432100 00112333332222111 10
Q ss_pred ----cHHH-HH--HHHHHHHHHHhhChHHHhhhhHHHHHHHH
Q 005975 292 ----WEAT-RI--EALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (666)
Q Consensus 292 ----~~~t-R~--aaL~WL~~L~~~~p~~i~~~l~~l~p~LL 326 (666)
+.+. +. ..+.=+..++...++++.|+++.+++.++
T Consensus 653 ~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 653 TLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111 11 22334456667777888888877776555
No 72
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.67 E-value=3.4e-06 Score=102.11 Aligned_cols=369 Identities=12% Similarity=0.177 Sum_probs=204.1
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh--------hhhHHHHHHHHHHhhcCCchhHHHHH-HHHH
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--------IIFFNQIFDALCKLSADSDANVQSAA-HLLD 97 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i--------l~~f~eIfd~L~kl~~D~d~~Vr~gA-~~Ld 97 (666)
..|++.+++.++.++.|++++|..+||.++.+|++.|++.. .+|+++++..+.....+-++.-+..+ +++.
T Consensus 535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56888899999999999999999999999999999888655 36999999999988887776655555 7777
Q ss_pred HHHHHhhccc-ccccHhhhHHHHHHhhcC------------CCHHHHHH---HHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 98 RLVKDIVTES-DQFSIEEFIPLLRERMNV------------LNPYVRQF---LVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 98 rLlKDIv~e~-~~f~L~~fIPlL~eri~~------------~np~vR~~---alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
.+++....+. ....++.++|++.+.... .|+....- ++.....+.+..+..+.+++..+++.++
T Consensus 615 ~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l 694 (1023)
T 4hat_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1023)
T ss_dssp HHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 7766544322 233477778877776642 12322322 4455555566666778888888888776
Q ss_pred HhcC-----------------CCChhHH------HHHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHhcCCCCHHH
Q 005975 162 NMLS-----------------DSSHEIR------QQADSALWEFLQEIKNSPSVD------YGRMAEILVQRAASPDEFT 212 (666)
Q Consensus 162 ~lLs-----------------D~~~eVR------~~A~~~L~~fL~eI~~~~~~d------~~~iI~iLl~~~~s~d~~i 212 (666)
++.. ...+.|| +...+.+..++. +.+..+ ++++++.++.--....+..
T Consensus 695 ~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~---~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~ 771 (1023)
T 4hat_C 695 QLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYIS---KARNLDDVVKVLVEPLLNAVLEDYMNNVPDA 771 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHH---HCSCHHHHHHHTHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHhHHHHHHHHHHHHHhCChhh
Confidence 4311 1112222 111111111111 111000 1111111111000000101
Q ss_pred HH-HHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCC
Q 005975 213 RL-TAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE 291 (666)
Q Consensus 213 rl-~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~ 291 (666)
|. ..+.-+..+++-.+..+.|.+|.++..++ +.+++.+.+.+ .+
T Consensus 772 r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf----------------------------------~~Tl~mi~~~~-~~ 816 (1023)
T 4hat_C 772 RDAEVLNCMTTVVEKVGHMIPQGVILILQSVF----------------------------------ECTLDMINKDF-TE 816 (1023)
T ss_dssp CCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHH----------------------------------HHHHHHHSSCS-SS
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH----------------------------------HHHHHHHhccc-cc
Confidence 10 01111222222222222222222222222 23333333322 35
Q ss_pred cHHHHHHHHHHHHHHHhhChHHHhh----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----hh--c----c----ch
Q 005975 292 WEATRIEALHWISTLLNRHRTEVLH----FLNDIFDTLLKALSDPSDEVVLLVLEVHACI----AK--D----L----QH 353 (666)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~~p~~i~~----~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~I----s~--~----~----~~ 353 (666)
.+++|..=.+.+..+..+|+..+.. .+..++..++-.++++..+|-..++..+..+ .+ + . .|
T Consensus 817 ~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~ 896 (1023)
T 4hat_C 817 YPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNY 896 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7899999999999999999999876 4455677777789999999988887765444 32 1 1 33
Q ss_pred HHHHHHHHHhhc-cccchhhhhHHHHHHHHHhccC--------------------ChHHHHHHHHHhhccc---CChHHH
Q 005975 354 FRQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVLL--------------------DAERVYRELSTILEGE---ADLDFA 409 (666)
Q Consensus 354 F~~fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~L--------------------~~E~Iy~~la~iL~~~---~dl~F~ 409 (666)
|..+++..+.-+ .++++-.=+.-..|+++|.... |.+.+...+++.|.+. -...=+
T Consensus 897 ~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi 976 (1023)
T 4hat_C 897 FFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQI 976 (1023)
T ss_dssp HHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444433 3334322223355777766542 2344555566666532 222223
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHhc
Q 005975 410 CTMVQALNLILLTSSELSELRDLLKKS 436 (666)
Q Consensus 410 ~~mVq~Ln~iLLTs~El~~lR~~L~~~ 436 (666)
..+|+.|-. ...+...||+.||+.
T Consensus 977 ~~fv~~l~~---~~~~~~~f~~~lrdf 1000 (1023)
T 4hat_C 977 ASFLSALTK---QCKDLVVFKGTLRDF 1000 (1023)
T ss_dssp HHHHHHHHH---TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH---ccCCHHHHHHHHHHH
Confidence 333333322 235788888888874
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.66 E-value=7.4e-07 Score=106.46 Aligned_cols=265 Identities=11% Similarity=0.135 Sum_probs=200.9
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHh
Q 005975 86 DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNM 163 (666)
Q Consensus 86 d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~--~~Li~yLp~fL~gLf~l 163 (666)
...++.+|..+..+++.-+... ..+ ..++..|.+.+.+.++. ..++..+..+....+ ..+-+|+=.+++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEH-DVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSS-SCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccc-ccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 4566777777777655322221 122 36888888888775444 888888888875432 24567777788999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH
Q 005975 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (666)
Q Consensus 164 LsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~L 242 (666)
.+|....||++|..+++.+.+.+.. .....++|.|+..+.+. .=..+..|+.-+..+++..+..+.-.+|+++|.+
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 9999999999999999999987732 34688899999888665 4678999999999999988889999999999999
Q ss_pred hhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChHHH-hhhhHH
Q 005975 243 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEV-LHFLND 320 (666)
Q Consensus 243 L~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~i-~~~l~~ 320 (666)
-.+|-|..+|+...|.++...+...+. +.|+...++.|.+.+.++.+ +-++ ++-| ... +-.++ .|-+.-
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~----n~d~~~~~~~~~~~~~~p~~-~~~~-~~~l---~~~tfv~~v~~~~l~~ 251 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVD----NKDIERFIPSLIQCIADPTE-VPET-VHLL---GATTFVAEVTPATLSI 251 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCC----CTTTGGGHHHHHHHHHCTTH-HHHH-HHHH---TTCCCCSCCCHHHHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCC----CcchhhhHHHHHHHhcChhh-hHHH-HHHh---hcCeeEeeecchhHHH
Confidence 999999999999999999988887775 37889999999999987643 3222 2222 111 11111 255667
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHhhcc
Q 005975 321 IFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 321 l~p~LL~~LsD~s~eVv~~~l~lLa~Is---~~~~~F~~fm~~LL~lf~ 366 (666)
+.|.|...|++++..+.+++.-+...+| ++...-.+|+..|+.-+.
T Consensus 252 ~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 252 MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH
Confidence 8999999999999999999998888887 466666666666665554
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.64 E-value=9.3e-07 Score=97.54 Aligned_cols=311 Identities=13% Similarity=0.088 Sum_probs=198.6
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhhc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv---~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
...+|+++..+.++++.++..|+.+|.|++.. .+..+.. ...++.|.+++. ++++.++..| .+|..+..+ .
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~--~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~ 118 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR--QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--D 118 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--S
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--H
Confidence 35689999999999999999999999999853 1111211 134778888887 7788887777 788887764 2
Q ss_pred ccccccHhhhHHHHHHhhc--------C--------CCHHHHHHHHHHHHHhhcCCch-hhhhchHHHHHHHHHhcCC--
Q 005975 106 ESDQFSIEEFIPLLRERMN--------V--------LNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSD-- 166 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~--------~--------~np~vR~~alswL~~L~svp~~-~Li~yLp~fL~gLf~lLsD-- 166 (666)
+....-++..+|.|.+.+. + .++.+...++..+.++...+.. +.+.-.+..++.|..++.+
T Consensus 119 ~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 2111112366888888882 2 3466777999999999876321 1111113566666666643
Q ss_pred ----CChhHHHHHHHHHHHHHH----H------------------------hhc-------------------CC-CCC-
Q 005975 167 ----SSHEIRQQADSALWEFLQ----E------------------------IKN-------------------SP-SVD- 193 (666)
Q Consensus 167 ----~~~eVR~~A~~~L~~fL~----e------------------------I~~-------------------~~-~~d- 193 (666)
++..++..|..+|..+.. + +.. .+ ..+
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence 344444444444444320 0 000 00 000
Q ss_pred --HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCc---cc-ccch--HhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 194 --YGRMAEILVQRAAS-PDEFTRLTAITWINEFVKLGGD---QL-VPYY--ADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 194 --~~~iI~iLl~~~~s-~d~~irl~Al~WL~~~i~l~~~---~l-~pyl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
-.+.++.++..+.+ .++.++..|+..|..+..-.+. .+ ...+ ...+|.+...|.+.+++++..|..+...+
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 13456666666654 3578888777777766542221 11 0111 36788999999999999999999887776
Q ss_pred HHhhCCCCCCCC--hHhHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCC-CH
Q 005975 265 RAIKADPADGFD--VGPILSIATRQLSSEW------EATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDP-SD 334 (666)
Q Consensus 265 ~~~i~~~~~~~d--l~~il~~L~~~L~~~~------~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~-s~ 334 (666)
... ....+ -...++.|.+.|.+.+ .++..+++..+..+..+.++...... .+.++.|...+... ++
T Consensus 359 s~~----~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 359 SRH----PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HTS----GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred hcC----HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 431 11100 1356777888887643 35777888889998887765433333 36889999999888 89
Q ss_pred HHHHHHHHHHHHHhh
Q 005975 335 EVVLLVLEVHACIAK 349 (666)
Q Consensus 335 eVv~~~l~lLa~Is~ 349 (666)
+|++.++++|..|..
T Consensus 435 ~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 435 KAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998874
No 75
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.56 E-value=1e-05 Score=98.08 Aligned_cols=330 Identities=11% Similarity=0.049 Sum_probs=207.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhccc----c-----------
Q 005975 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES----D----------- 108 (666)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~----~----------- 108 (666)
.++.++.-.|.++..|+|..-. ..|++.++.+..++.+++..+..+-..|..+.+++..-. +
T Consensus 124 ~~~~vinKLa~~La~I~k~~~P---~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L 200 (1073)
T 3gjx_A 124 KEKVYIGKLNMILVQILKQEWP---KHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSM 200 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCh---hhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 4678888888888888764222 246777888877776554444444467777777765310 0
Q ss_pred cccHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH-HHhcCCCChhHHHHHHHHHHHHHHH-
Q 005975 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL-FNMLSDSSHEIRQQADSALWEFLQE- 185 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gL-f~lLsD~~~eVR~~A~~~L~~fL~e- 185 (666)
.-..+.+++.+.+.+. ..++.+...++..+..+.+-.+.+.+.. +.+++.| |++++ ++++|.+|++||.+++..
T Consensus 201 ~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 201 CNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcc
Confidence 1124556666666664 4678888888888888877666554432 5678877 68885 468999999999887752
Q ss_pred hhc--------------------------------CC---------------------------CCC----HHHHHHHHH
Q 005975 186 IKN--------------------------------SP---------------------------SVD----YGRMAEILV 202 (666)
Q Consensus 186 I~~--------------------------------~~---------------------------~~d----~~~iI~iLl 202 (666)
+.+ .. ..+ +...+.+|+
T Consensus 278 ~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll 357 (1073)
T 3gjx_A 278 VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYML 357 (1073)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 100 00 001 112344566
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHH-h---cC---------------------cccccchHhHHHHHhhhhcCCcH------
Q 005975 203 QRAASPDEFTRLTAITWINEFVK-L---GG---------------------DQLVPYYADILGAILPCISDKEE------ 251 (666)
Q Consensus 203 ~~~~s~d~~irl~Al~WL~~~i~-l---~~---------------------~~l~pylp~lL~~LL~~Lsd~~~------ 251 (666)
.+...+|.++-..++.++..+.+ + .+ ..+.|++.++..++...|.++++
T Consensus 358 ~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~ 437 (1073)
T 3gjx_A 358 LVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEN 437 (1073)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEEC
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCc
Confidence 77777777776666663333332 1 11 01567788888888888886531
Q ss_pred -------H---------HHHHHHHHHHHHHHhhCCCCCCCC-hHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChH
Q 005975 252 -------K---------IRVVARETNEELRAIKADPADGFD-VGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 252 -------e---------IR~~A~~~n~~L~~~i~~~~~~~d-l~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~ 312 (666)
| .++.-.++...+..... .+ +..+++.+.+++. .++|..++|++-.++.++....+
T Consensus 438 e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~-----~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~ 512 (1073)
T 3gjx_A 438 DQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY-----VDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHE 512 (1073)
T ss_dssp SSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCH
T ss_pred ccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCc
Confidence 1 12222222211111100 00 1233445555554 35699999999999999865554
Q ss_pred H-HhhhhHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 005975 313 E-VLHFLNDIFDTLLKALSDP-----SDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 382 (666)
Q Consensus 313 ~-i~~~l~~l~p~LL~~LsD~-----s~eVv~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~ 382 (666)
+ =.++++++++.|+.....+ ...|+...|+++++++ .+.+||+.++..|++.+.++++-++.-+..-+.+
T Consensus 513 ~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 513 EDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4 3489999999999887544 3456777889999998 4789999999999999887666655554444444
Q ss_pred Hh
Q 005975 383 LC 384 (666)
Q Consensus 383 Lc 384 (666)
+|
T Consensus 593 i~ 594 (1073)
T 3gjx_A 593 IA 594 (1073)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.52 E-value=2.1e-06 Score=89.88 Aligned_cols=189 Identities=11% Similarity=0.078 Sum_probs=131.4
Q ss_pred hhHHHHHh-hcCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhc-CCchhHHHHH-HHHHHHHHHhhc
Q 005975 32 QIVPPVLN-SFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 32 ~Il~pVL~-~~~D~d~rVR~~A~eaL~nI~Kv---~r~~il~~f~eIfd~L~kl~~-D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
..+|+++. ++.++++.||..|+.+|.||+.. ++..+.. ...++.|.+++. +++..||..| .+|..++..-..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 45788999 99999999999999999999853 2222222 146778888886 5677887767 788887753221
Q ss_pred ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005975 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL 183 (666)
....|.-...+|.|.+.+++.++.+|..++..|..+..-.+ +...++ ..+++.|+.+|..++.+||..|..+|..++
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 11223334578999999999999999999999998875422 233333 248889999999999999999999999988
Q ss_pred HHhhc------CCCCCHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHH
Q 005975 184 QEIKN------SPSVDYGRMAEILVQRAASPD--EFTRLTAITWINEF 223 (666)
Q Consensus 184 ~eI~~------~~~~d~~~iI~iLl~~~~s~d--~~irl~Al~WL~~~ 223 (666)
..-.. .....+..+++--++.++..+ +++...|...+..+
T Consensus 238 ~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 238 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp TTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 65211 011235566655566666443 45555566655443
No 77
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.51 E-value=2.1e-06 Score=88.36 Aligned_cols=197 Identities=14% Similarity=0.081 Sum_probs=142.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---Ccccccc-hHhHH
Q 005975 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG---GDQLVPY-YADIL 239 (666)
Q Consensus 164 LsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~---~~~l~py-lp~lL 239 (666)
+-..+..-|.++.+.|.+.+........-.++-+++++.-++.+++..+-..+++.+..++... +-.+.+| ...++
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3334555566555555555443221111123445677776777889999999999999887653 3346666 58899
Q ss_pred HHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH
Q 005975 240 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (666)
Q Consensus 240 ~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~ 319 (666)
|.++.-++|+.+.+|+.+..+...+..... ...+.+.+.+.+.+.++.+|+.|+.|+..+.+.++-. + .
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~ 203 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--L 203 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--G
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--c
Confidence 999999999999999999998877766543 3678899999999999999999999999999997655 2 4
Q ss_pred HHH---HHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhH
Q 005975 320 DIF---DTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKR 375 (666)
Q Consensus 320 ~l~---p~LL~~LsD~s~eVv~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (666)
..+ |.+.+.++|++..||..|+.++..+-. ++. +.+.+. ++=..++..+++|
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg---~L~~~~~~~l~er 260 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAG---RMADKDKSLVEER 260 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHC---CCCHHHHHHHHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-HHHHHh---cCCHHHHHHHHHH
Confidence 567 999999999999999999998876552 333 333332 2224456666665
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.47 E-value=3.8e-05 Score=87.36 Aligned_cols=312 Identities=15% Similarity=0.095 Sum_probs=200.0
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH----hcchhhhhHHHHHHHHHHhhcC-CchhHHHHH-HHHHHHHHHhhc
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKV----VRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv----~r~~il~~f~eIfd~L~kl~~D-~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
..+|+++..+...+..+|..|+.+|.||+.. .+..+.. ...++.|.+++.+ .+..+++.| .+|-.+.. ..
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~ 165 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN--CDGVPALVRLLRKARDMDLTEVITGTLWNLSS--HD 165 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH--TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SG
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cc
Confidence 4679999999999999999999999999852 2223322 2457777877765 566766655 56666543 11
Q ss_pred ccccccHhhhHHHHHHhh------------------cCCCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcC
Q 005975 106 ESDQFSIEEFIPLLRERM------------------NVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLS 165 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri------------------~~~np~vR~~alswL~~L~svp~~--~Li~yLp~fL~gLf~lLs 165 (666)
+....-+..-+|.|.+.+ ...++.++..+.+.|.+|...... ..+.-.+-+.+.|..++.
T Consensus 166 ~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 166 SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 110011123466666654 124689999999999999876532 222222344445554443
Q ss_pred ------CCChhHHHHHHHHHHHHHH----Hhhc-------------------CCCCC---HHHHHHHHHHhcC-CCCHHH
Q 005975 166 ------DSSHEIRQQADSALWEFLQ----EIKN-------------------SPSVD---YGRMAEILVQRAA-SPDEFT 212 (666)
Q Consensus 166 ------D~~~eVR~~A~~~L~~fL~----eI~~-------------------~~~~d---~~~iI~iLl~~~~-s~d~~i 212 (666)
+++..+...|.-+|..+.. ++.. ...+. -...++.++..++ +.++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 3444444444455544432 2210 00111 1356778787774 457889
Q ss_pred HHHHHHHHHHHHHhcC---cccccch--HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHh
Q 005975 213 RLTAITWINEFVKLGG---DQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (666)
Q Consensus 213 rl~Al~WL~~~i~l~~---~~l~pyl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~ 287 (666)
+..|+..|..++.-.. ..+...+ ...+|.|...|...+++++..|..+...+...... ...+ -...++.|.+.
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~~I-~~g~ip~LV~L 403 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELI-GKHAIPNLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-HHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-HHHH-HhCCHHHHHHH
Confidence 9888888887764211 1111111 45689999999999999999999888776532110 0011 14567888888
Q ss_pred cCCC--------cHHHHHHHHHHHHHHHhhChHHHhhhhH-HHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh
Q 005975 288 LSSE--------WEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDP--SDEVVLLVLEVHACIAK 349 (666)
Q Consensus 288 L~~~--------~~~tR~aaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~--s~eVv~~~l~lLa~Is~ 349 (666)
|.+. +.+++.+|+.-|..+..+.++......+ +.+|.|...|.+. ++.+++.+.++|+.+..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 8765 4677888888888888887766555443 6889999999886 89999999999999984
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.36 E-value=4.1e-05 Score=73.98 Aligned_cols=209 Identities=18% Similarity=0.187 Sum_probs=160.0
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHh
Q 005975 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKL 226 (666)
Q Consensus 149 Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d--~~irl~Al~WL~~~i~l 226 (666)
+..|=.+|++.+.++|.|.-=.|++-|...+....++.+. -++.++..|+..+..++ +.++. ...-++.+...
T Consensus 26 ~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e----l~epl~~kL~vm~~ksEaIpltqe-Ia~a~G~la~i 100 (253)
T 2db0_A 26 MAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED----LYEPMLKKLFSLLKKSEAIPLTQE-IAKAFGQMAKE 100 (253)
T ss_dssp HHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhcccCchHHH-HHHHHhHHHHh
Confidence 3457788999999999999889999888877777765432 25666766666654433 22222 23345555666
Q ss_pred cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005975 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (666)
Q Consensus 227 ~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L 306 (666)
.|+. ...++|.++....-.++.+|-.-..+.++.++.-.+ -++.++.-+...+.|.+...|.+||+++..+
T Consensus 101 ~Pe~----v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-----l~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 101 KPEL----VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-----LMASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp CHHH----HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred CHHH----HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 5544 457788888888888999998877777777765221 1356666777888899999999999999999
Q ss_pred HhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhH
Q 005975 307 LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (666)
Q Consensus 307 ~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (666)
.+..+.-+.||+|.++ ..|.|.+.-||..+.++|..++...+-|++++..-++.|.+...++...
T Consensus 172 Gen~~~yv~PfLprL~----aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 172 GENSFKYVNPFLPRII----NLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp CTTTHHHHGGGHHHHH----GGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred hccCccccCcchHHHH----HHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999887654 5678888888999999999999766669999999999999998888765
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.36 E-value=1.2e-05 Score=88.94 Aligned_cols=253 Identities=15% Similarity=0.053 Sum_probs=158.1
Q ss_pred HHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcC----------C-CChhHHHHHHHHHHHHHHHhh-cCCCC-CHHHH
Q 005975 133 FLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLS----------D-SSHEIRQQADSALWEFLQEIK-NSPSV-DYGRM 197 (666)
Q Consensus 133 ~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLs----------D-~~~eVR~~A~~~L~~fL~eI~-~~~~~-d~~~i 197 (666)
.++..|.++..-+ +.-.++ -..++.|.+++. | .+++++..|..+|..+...=. ....+ ..+..
T Consensus 167 qAv~aL~nls~~~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCCH--HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 6666676663222 111111 235566666662 2 346788888888888873211 00011 23667
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhh-cCCcHHHHHHHHHHHHHHHHhhCCCCCC
Q 005975 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADG 274 (666)
Q Consensus 198 I~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~py--lp~lL~~LL~~L-sd~~~eIR~~A~~~n~~L~~~i~~~~~~ 274 (666)
||.|+..+.+++++++..|+..|..+..-........ -.+.+|.|+..| ...+++++..|..+...+.....+....
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999888876643211111111 135677777764 4567888887777766554311110000
Q ss_pred CC-hHhHHHHHHHhcCCCcH----HHHHHHHHHHHHHHh---hChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005975 275 FD-VGPILSIATRQLSSEWE----ATRIEALHWISTLLN---RHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHA 345 (666)
Q Consensus 275 ~d-l~~il~~L~~~L~~~~~----~tR~aaL~WL~~L~~---~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa 345 (666)
+- ....++.|.+.+.+... .++..|.--|..+.. ..++...... .+.+|.|+..|.+.+++|+..++|+|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 10 13577888888875432 367766666666665 4555444333 368999999999999999999999999
Q ss_pred HHhhc-cc---hHHH--HHHHHHhhccccchhhhhHHHHHHHHHhccC
Q 005975 346 CIAKD-LQ---HFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (666)
Q Consensus 346 ~Is~~-~~---~F~~--fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L 387 (666)
.++.+ ++ .+.. .+..|.+++.....-..+.+...+++|+..-
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99943 22 2222 5677888886665555666777888888764
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.32 E-value=1.1e-05 Score=86.34 Aligned_cols=224 Identities=11% Similarity=0.044 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH--hhcCCCCCHHHHHHHH
Q 005975 126 LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEIL 201 (666)
Q Consensus 126 ~np~vR~~alswL~~L~svp~~--~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e--I~~~~~~d~~~iI~iL 201 (666)
.++.++..+...|.++..-.+. ..+.-....++.|.++|..++++|+..|+.+|..+... -.++..+--...|+.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 3578999999999999755432 23333566788999999999999999999999888631 0000001012457788
Q ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCcH----HHHHHHHHHHHHHHHhhCCCCCC
Q 005975 202 VQR-AASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG 274 (666)
Q Consensus 202 l~~-~~s~d~~irl~Al~WL~~~i~l~~~~l~py--lp~lL~~LL~~Lsd~~~----eIR~~A~~~n~~L~~~i~~~~~~ 274 (666)
+.. ..+.++.++..|+.-+..+....++.-... -...+|.|...+.+..+ ++++.|..+...+...+....+.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 876 456788888888877776665332211112 25678888888876543 58887777766655422111010
Q ss_pred ----CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 275 ----FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 275 ----~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
.+ ...++.|.+.+.+.+..++..|...|..+....++...... .+.+|.|.+.|.+.+++++..+++.|..++.
T Consensus 256 ~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 256 RQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHT-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 01 24678899999998899999999999999876666554443 3689999999999999999999999999995
Q ss_pred c
Q 005975 350 D 350 (666)
Q Consensus 350 ~ 350 (666)
+
T Consensus 335 ~ 335 (354)
T 3nmw_A 335 N 335 (354)
T ss_dssp T
T ss_pred C
Confidence 4
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.28 E-value=6.3e-06 Score=88.25 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=149.4
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccccc
Q 005975 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (666)
Q Consensus 31 ~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~ 109 (666)
..+.+.|+++|..+|...|+...-.+.+.++. .++.+ -+...+.+=++|+++-+|..| -.|.++ ..+
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I----~~~--- 134 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI----IVTSSLTKDMTGKEDSYRGPAVRALCQI----TDS--- 134 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG----GGHHHHHHHHHSSCHHHHHHHHHHHHHH----CCT---
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH----HHHHHHHhhcCCCcHhHHHHHHHHHhcC----CCH---
Confidence 45678899999999999999988888887775 44443 335566777899999999888 444443 211
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
--++.+.+.+.+++.+.||+||+.|+-+...+....+. ++ ..|++.+-.++.|.++-|.-.|..+|.++. ..
T Consensus 135 ~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v---~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~----~~ 206 (355)
T 3tjz_B 135 TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VV---KRWVNEAQEAASSDNIMVQYHALGLLYHVR----KN 206 (355)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HH---HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HH---HHHHHHHHHHhcCCCccHHHHHHHHHHHHH----hh
Confidence 12788999999999999999999998777766554433 33 357778888999999999876655444443 22
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhC
Q 005975 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (666)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (666)
....+.++++.+..+ .-.++..+.. ||+-+....+.+--.--.++++.+.+++.+.++.|--.|.++.-.+...
T Consensus 207 d~~a~~kLv~~l~~~-~l~~~~~q~~---llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-- 280 (355)
T 3tjz_B 207 DRLAVSKMISKFTRH-GLKSPFAYCM---MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-- 280 (355)
T ss_dssp CHHHHHHHHHHHHSS-CCSCHHHHHH---HHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred chHHHHHHHHHHhcC-CCcChHHHHH---HHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC--
Confidence 111234444443321 2224555443 4443333333221112356778888888998888887777765443221
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
..-.+...++.|...+.+++..+|..|++=|..+..+.|+.+..+..+ +..+++|++-.+...|+.+|-+-+
T Consensus 281 ---~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~----ie~li~d~n~sI~t~Aittllktg 352 (355)
T 3tjz_B 281 ---SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLD----LENLVTDANRSIATLAITTLLKTG 352 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred ---CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHH----HHHHccCCcHhHHHHHHHHhhhcc
Confidence 011234455667777777788899999999999999999998876654 556778999888888877665543
No 83
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.26 E-value=0.00028 Score=82.15 Aligned_cols=338 Identities=14% Similarity=0.114 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHH-hhcccccccHhhhHHHHHHhh
Q 005975 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD-IVTESDQFSIEEFIPLLRERM 123 (666)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKD-Iv~e~~~f~L~~fIPlL~eri 123 (666)
..+|.+|+..|-.+.+.-+.. -.-..++.+.+.+.+.+++...+.-| +.|.-+-.+ -|++. -..-..+++.|.+.+
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~-~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~-L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLT-CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIM-IRSNESFTEILLTMI 385 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCT-TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHH-HHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCC-cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHH-HHhCHHHHHHHHHHH
Confidence 467777766654443322111 12346788888888877665445555 776654221 12111 001145577777777
Q ss_pred cC-CCHHHHHHHHHHHHHhhcCCch-h--------hhh--------------------chHH----------HHHHHHHh
Q 005975 124 NV-LNPYVRQFLVGWITVLDSVPDI-D--------MLG--------------------FLPD----------FLDGLFNM 163 (666)
Q Consensus 124 ~~-~np~vR~~alswL~~L~svp~~-~--------Li~--------------------yLp~----------fL~gLf~l 163 (666)
.. .++.+-+.+++-+.++..-++. . +.. ++.+ .++.|..+
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 64 6778889999998888663321 0 000 1112 45666788
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhc-Ccccc-cch-Hh
Q 005975 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF---TRLTAITWINEFVKLG-GDQLV-PYY-AD 237 (666)
Q Consensus 164 LsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~---irl~Al~WL~~~i~l~-~~~l~-pyl-p~ 237 (666)
+..+++++|..|..+|..+...-.....+-=+..++.|+..+.+..+. .|..|...|..+.-.. +.... .|- ..
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 888999999999999988864211100011145677888887776544 7888988888776432 21111 111 27
Q ss_pred HHHHHhhhhcC-CcH------------HH-HHHHHHHHHHHHHhhCCCCCCC---Ch--HhHHHHHHHhcCCCcHHHHHH
Q 005975 238 ILGAILPCISD-KEE------------KI-RVVARETNEELRAIKADPADGF---DV--GPILSIATRQLSSEWEATRIE 298 (666)
Q Consensus 238 lL~~LL~~Lsd-~~~------------eI-R~~A~~~n~~L~~~i~~~~~~~---dl--~~il~~L~~~L~~~~~~tR~a 298 (666)
.+|.|+..|.. ++. .. +..|..+...+...-...++.. -+ ...++.|...+.+++..+|.+
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 77888877762 221 01 4445555444433210000000 02 247888999999999999999
Q ss_pred HHHHHHHHHhhChHHHh-hhh----HH---HHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccch----H--HHHHHHHHh
Q 005975 299 ALHWISTLLNRHRTEVL-HFL----ND---IFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQH----F--RQLVVFLVH 363 (666)
Q Consensus 299 aL~WL~~L~~~~p~~i~-~~l----~~---l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~----F--~~fm~~LL~ 363 (666)
|..-+..+.. +|+.+. .+. +. -++.|+..+..++.+++..+.+.|+.+++ ++.- + ..++..++.
T Consensus 626 A~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 626 TLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp HHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHH
Confidence 9999999986 666542 332 12 38889999988899999999999999963 2211 1 357788888
Q ss_pred hccc--cchhhhhHHHHHHHHHhcc
Q 005975 364 NFRV--DNSLLEKRGALIIRRLCVL 386 (666)
Q Consensus 364 lf~~--d~~lLe~Rg~~IIR~Lc~~ 386 (666)
++.+ ++.-+..||..++++|-..
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHh
Confidence 8877 7888899999999999863
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.25 E-value=3.7e-05 Score=80.27 Aligned_cols=230 Identities=11% Similarity=0.007 Sum_probs=143.5
Q ss_pred hhHHHHHhhcCCCCH------------HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCchhHHHHH-HHHH
Q 005975 32 QIVPPVLNSFSDQDS------------RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLD 97 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~------------rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~k-l~~D~d~~Vr~gA-~~Ld 97 (666)
..++.++..+.|+++ .-|..|.+.|.++++.........-...++.|.. ++.++++.||..| .+|.
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344566666666532 4566667777776642211100001134677788 8999999999988 7777
Q ss_pred HHHHHhhcccccccHhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCch---hhhhchHHHHHHHHHhcCCCChhHHH
Q 005975 98 RLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI---DMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 98 rLlKDIv~e~~~f~L~~fIPlL~eri~~-~np~vR~~alswL~~L~svp~~---~Li~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
.++.+-..-...+--...+|.|.+.+.. .++.+|..++..|..+..-.+. .+.. ...++.|..++.++++.||+
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~--~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR--LDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHcCCCHHHHH
Confidence 7654211000011112357777777774 5899999999999998753322 2322 25788888899999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc------cccchHhHHHHHhhhh
Q 005975 174 QADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ------LVPYYADILGAILPCI 246 (666)
Q Consensus 174 ~A~~~L~~fL~eI~~~-~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~------l~pylp~lL~~LL~~L 246 (666)
.|+.+|..+...-... ..+-=..+++.|+..+.++++.++..|+..+..++...+.. ..+.+..+|.-....+
T Consensus 186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l 265 (296)
T 1xqr_A 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265 (296)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence 9999999998651100 00011468899999999999999999999999888763321 1123444554444445
Q ss_pred cCC--cHHHHHHHHHHHHH
Q 005975 247 SDK--EEKIRVVARETNEE 263 (666)
Q Consensus 247 sd~--~~eIR~~A~~~n~~ 263 (666)
... ..++.+.|.+..+.
T Consensus 266 q~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 266 QQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp TTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 422 34555555554443
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.24 E-value=1.3e-07 Score=86.20 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=86.1
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhccc
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~ 107 (666)
..+.-.+.+...+.|+|+.+|+.|+.+|.++.. . . ++.|.+++.|+++.||..| .+|.++
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~------~-~~~L~~~L~d~~~~vR~~A~~aL~~~-------- 69 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E------A-FEPLLESLSNEDWRIRGAAAWIIGNF-------- 69 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS----T------T-HHHHHHGGGCSCHHHHHHHHHHHGGG--------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h------H-HHHHHHHHcCCCHHHHHHHHHHHHhc--------
Confidence 344556788999999999999999988765421 1 1 4778888899999999888 444332
Q ss_pred ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005975 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (666)
Q Consensus 108 ~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~ 181 (666)
.-+..+|.|.+.+.+.++.||..++..+..+.. ++.++.|.+++.|+++.||..|..+|++
T Consensus 70 ---~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 70 ---QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 113458888888889999999999999987642 5667888889999999999999887754
No 86
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.00011 Score=85.46 Aligned_cols=317 Identities=12% Similarity=0.076 Sum_probs=208.5
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcC-CchhHHHHH-HHHHHHHHHhhc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv--~r~~il~~f~eIfd~L~kl~~D-~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
...+.+.+.+.|.+++...|..|+|.|..+... +|..+. .=...+..|++++.+ .+..+--|| ..|..+.++--.
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~-~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR-SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH-HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH-hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 355778888899888877899999999887532 122111 113446666666654 455566666 666665442111
Q ss_pred --c------------------c------------------ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-
Q 005975 106 --E------------------S------------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD- 146 (666)
Q Consensus 106 --e------------------~------------------~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~- 146 (666)
+ . ...-=...||.|.....+.++.+|..++..|.++..-+.
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 0 0 000112378999999999999999999999999975543
Q ss_pred -hhhhhchHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHhcCC-CCH--------
Q 005975 147 -IDMLGFLPDFLDGLFNMLSDSSHE---IRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAAS-PDE-------- 210 (666)
Q Consensus 147 -~~Li~yLp~fL~gLf~lLsD~~~e---VR~~A~~~L~~fL~eI~~~---~~~d~~~iI~iLl~~~~s-~d~-------- 210 (666)
..+.. ..-++.|..++...... +|..|..+|.+++-..... +....-+.|+.|+.-+.. ++.
T Consensus 491 R~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 491 IPQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp HHHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 22333 25567778888776544 8999999999998422100 011112678888887762 221
Q ss_pred -----HHHHHHHHHHHHHHHhcC---ccccc-ch--HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCC-CCCCh-
Q 005975 211 -----FTRLTAITWINEFVKLGG---DQLVP-YY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPA-DGFDV- 277 (666)
Q Consensus 211 -----~irl~Al~WL~~~i~l~~---~~l~p-yl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~-~~~dl- 277 (666)
.-+..|+..|.++...++ ++... .+ .+.+|.|...|.++++.||..|.++...++..-..-. .-++.
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 236788888888888763 23322 23 2578899999998899999999999888874221000 11111
Q ss_pred -Hh---HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh
Q 005975 278 -GP---ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD--PSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 278 -~~---il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD--~s~eVv~~~l~lLa~Is~ 349 (666)
+. =++.|...+.+++.++|.+|...|.++....+.-....+ ++.+..++..|.+ ++++++..++-++..+++
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 12 277888999999999999999667777677765333333 3577888888888 899999999988888873
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.18 E-value=9.7e-06 Score=86.83 Aligned_cols=221 Identities=14% Similarity=0.024 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhh---HHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHH-hhcccccccHhhhHHHH
Q 005975 45 DSRVRYYACEALYNIAKVVRGDFIIF---FNQIFDALCKLSADSDANVQSAA-HLLDRLVKD-IVTESDQFSIEEFIPLL 119 (666)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~r~~il~~---f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKD-Iv~e~~~f~L~~fIPlL 119 (666)
+..+|..|+.+|.|++..-. ..-.. -...++.|.+++.++++.|+..| .+|..+... -........-.-.||.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 46799999999999974311 11111 23568999999998889898887 677776541 00000011112347777
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHhhcCCchh--hhhchHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHHhhcCCC-
Q 005975 120 RERM-NVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSH----EIRQQADSALWEFLQEIKNSPS- 191 (666)
Q Consensus 120 ~eri-~~~np~vR~~alswL~~L~svp~~~--Li~yLp~fL~gLf~lLsD~~~----eVR~~A~~~L~~fL~eI~~~~~- 191 (666)
.+.+ ...++.++..++..+.++..-.+.. -+.--...++.|.+++.+.+. +|++.|+.+|..+..-+...+.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 7764 5678999999999999988733221 111135678888889877654 5888888888877642111000
Q ss_pred ---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHH
Q 005975 192 ---VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRA 266 (666)
Q Consensus 192 ---~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pyl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (666)
+--...++.|+..+.+++..++..|+.-|..+..-.++ -...+ ...+|.|...+...++++|+.|..+...+..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 00134789999999999999999999988877532221 12222 3568889999988999999999999887765
Q ss_pred h
Q 005975 267 I 267 (666)
Q Consensus 267 ~ 267 (666)
.
T Consensus 335 ~ 335 (354)
T 3nmw_A 335 N 335 (354)
T ss_dssp T
T ss_pred C
Confidence 4
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.17 E-value=0.00044 Score=69.30 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=167.9
Q ss_pred HHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCCchhHHHHH-
Q 005975 16 FLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA- 93 (666)
Q Consensus 16 ~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~il~~f~eIfd~L~kl~~D~d~~Vr~gA- 93 (666)
.|..-..-..+..+=+ .+..++.-++|.|+.++.-|.-++.++.|.+.+ .-.....++||.+.+++.+.|..|.=-|
T Consensus 18 sWkiK~a~ela~~~e~-~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~ 96 (265)
T 3b2a_A 18 SWQILDAVSLALEDKR-ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKAL 96 (265)
T ss_dssp TTCHHHHHHHHHHCHH-HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HhhHHHHHHHHHhchh-HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 5643333333333333 566677778999999999999999999987533 2235678999999999988887665444
Q ss_pred HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHH
Q 005975 94 HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 94 ~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
.+|..++++..-..+ +..+++..+..-+..+|+-.+..+.+-+..+ ......|.+.+-++.++.-.++.|+.
T Consensus 97 r~L~~LLe~vpL~~~--~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~ 168 (265)
T 3b2a_A 97 RALGYLVKDVPMGSK--TFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKV 168 (265)
T ss_dssp HHHHHHHTTCCBCHH--HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHcCCCCCHH--HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHH
Confidence 788888776654333 4588899999999999999999998888866 23445788888889999888999999
Q ss_pred HHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhc--CC
Q 005975 174 QADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCIS--DK 249 (666)
Q Consensus 174 ~A~~~L~~fL~eI~~~~~~-d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~-~~~l~pylp~lL~~LL~~Ls--d~ 249 (666)
++-.+|-+.. ..+.+. .+..++.-+-..+++.|++++..|+.-+.++...+ .+...+=+-+++.++ .+++ +.
T Consensus 169 agl~~L~eia---~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v-~~l~~~~~ 244 (265)
T 3b2a_A 169 AGFCLFLNML---NSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIV-DGLVYREG 244 (265)
T ss_dssp HHHHHHHHHG---GGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHH-HHGGGCSS
T ss_pred HHHHHHHHhh---cccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHH-HHHHHhcC
Confidence 8855443333 222222 36777777777788999999999999998877753 333444444444433 4555 45
Q ss_pred cHHHHHHHHHHHHHH
Q 005975 250 EEKIRVVARETNEEL 264 (666)
Q Consensus 250 ~~eIR~~A~~~n~~L 264 (666)
.|.+|.-|..+.+.+
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 799999998877554
No 89
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.16 E-value=0.00067 Score=82.35 Aligned_cols=337 Identities=13% Similarity=0.172 Sum_probs=187.1
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchh--------hhhHHHHHHHHHHhhcCCch-hHHHHHHHHH
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--------IIFFNQIFDALCKLSADSDA-NVQSAAHLLD 97 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~i--------l~~f~eIfd~L~kl~~D~d~-~Vr~gA~~Ld 97 (666)
..|++.++.-++..+.|+++.|+.+||.++..|++.|+... .+|..+|+..+.....+-++ ++..--+++.
T Consensus 561 ~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~ 640 (1073)
T 3gjx_A 561 WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVG 640 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999998653 36888999888877776544 3332224444
Q ss_pred HHHHHhhccc-ccccHhhhHHHHHHhhcC------------CCHHHHHHHHHHHH---HhhcCCchhhhhchHHHHHHHH
Q 005975 98 RLVKDIVTES-DQFSIEEFIPLLRERMNV------------LNPYVRQFLVGWIT---VLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 98 rLlKDIv~e~-~~f~L~~fIPlL~eri~~------------~np~vR~~alswL~---~L~svp~~~Li~yLp~fL~gLf 161 (666)
.++.....+. ....++.++|+..+.... .|+.+-.-+..-+. .+++..+..+.+++..+.+.++
T Consensus 641 ~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l 720 (1073)
T 3gjx_A 641 YMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDML 720 (1073)
T ss_dssp HHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHH
Confidence 4444333322 133477777777776542 13432222222222 3344445556666666666554
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc---ccccchHhH
Q 005975 162 NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QLVPYYADI 238 (666)
Q Consensus 162 ~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~---~l~pylp~l 238 (666)
+ +=+...+.+...+..=+. .... ..++.+++ .+|...+.-+..++.-..+ ....++|.+
T Consensus 721 ~--------~y~~~s~~i~~~v~~~g~---~~~~---~~~~~~~r----~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl 782 (1073)
T 3gjx_A 721 N--------VYKCLSENISAAIQANGE---MVTK---QPLIRSMR----TVKRETLKLISGWVSRSNDPQMVAENFVPPL 782 (1073)
T ss_dssp H--------HHHHHHHHHHHHHHHHCG---GGGS---SHHHHHHH----HHHHHHHHHHHHHHTTCSCHHHHHHHTSHHH
T ss_pred H--------HHHHHHHHHHHHHHhCCc---hhhc---cHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHhHHHH
Confidence 2 212222222222211000 0000 01111111 2444445555555544332 134566777
Q ss_pred HHHHhhhhcCC-----cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHH----HhcC---CCcHHHHHHHHHHHHHH
Q 005975 239 LGAILPCISDK-----EEKIRVVARETNEELRAIKADPADGFDVGPILSIAT----RQLS---SEWEATRIEALHWISTL 306 (666)
Q Consensus 239 L~~LL~~Lsd~-----~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~----~~L~---~~~~~tR~aaL~WL~~L 306 (666)
+..++.--... ++++=......-..+-..+. -++..+++.+. +.+. .+.+++|..-...+..+
T Consensus 783 ~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~-----~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~ 857 (1073)
T 3gjx_A 783 LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHIT-----AEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 857 (1073)
T ss_dssp HHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHH
Confidence 77777633333 34444444333333322221 11333333321 2222 46799999999999999
Q ss_pred HhhChHHHhh----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----hhc----c----chHHHHHHHHHhhc-cccc
Q 005975 307 LNRHRTEVLH----FLNDIFDTLLKALSDPSDEVVLLVLEVHACI----AKD----L----QHFRQLVVFLVHNF-RVDN 369 (666)
Q Consensus 307 ~~~~p~~i~~----~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~I----s~~----~----~~F~~fm~~LL~lf-~~d~ 369 (666)
..+|+..++. .+..++..++-.++++..+|-..++.++..+ ..+ . .||..+++.++.-+ .+++
T Consensus 858 ~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 858 NSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 9999998886 4455788888889999999988877765444 322 2 33344444444433 3333
Q ss_pred hhhhhHHHHHHHHHhcc
Q 005975 370 SLLEKRGALIIRRLCVL 386 (666)
Q Consensus 370 ~lLe~Rg~~IIR~Lc~~ 386 (666)
+-.=+.-..|.++|...
T Consensus 938 ~~~f~~q~~il~~l~~~ 954 (1073)
T 3gjx_A 938 TAGLTMHASILAYMFNL 954 (1073)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 32222234566666554
No 90
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.07 E-value=0.0006 Score=80.99 Aligned_cols=248 Identities=11% Similarity=0.093 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhc
Q 005975 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN 124 (666)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~ 124 (666)
..+|..||.+|.-+.-+... .++++.|...+.|.+..++.+| .+|.-+. +-..+...+..++..+. .
T Consensus 451 ~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~dd~~~~~~~AalALGli~---vGTgn~~ai~~LL~~~~---e 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYNDSATSGEAAALGMGLCM---LGTGKPEAIHDMFTYSQ---E 518 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh---cccCCHHHHHHHHHHHh---c
Confidence 67888888776654211111 2566667766666666666555 3433321 11222223444444444 3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 005975 125 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQR 204 (666)
Q Consensus 125 ~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~ 204 (666)
+.+..+|.+++..|..+.--.. ...+.++..|. .|.++-||.++.-+++--.- ...-...|+.|+..
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~----e~~~~li~~L~---~~~dp~vRygaa~alglAya------GTGn~~aIq~LL~~ 585 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQ----ELADDLITKML---ASDESLLRYGGAFTIALAYA------GTGNNSAVKRLLHV 585 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCG----GGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTT------TSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCCh----HHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHH
Confidence 5677888888888875532111 12333333322 46788899887555442221 11113444444443
Q ss_pred -cCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh-cCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHH
Q 005975 205 -AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 282 (666)
Q Consensus 205 -~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~L-sd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~ 282 (666)
..++++.+|..|+.-|. ++..+.. +.++.++..+ .+.++.+|..|.-+.+.+- .+-....+++
T Consensus 586 ~~~d~~d~VRraAViaLG-lI~~g~~-------e~v~rlv~~L~~~~d~~VR~gAalALGli~-------aGn~~~~aid 650 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALG-FVLLRDY-------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC-------AGKGLQSAID 650 (963)
T ss_dssp HHHCSCHHHHHHHHHHHH-HHTSSSC-------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT-------SSSCCHHHHH
T ss_pred hccCCcHHHHHHHHHHHH-hhccCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-------cCCCcHHHHH
Confidence 34677889998888776 3333332 3345555544 4778999999988876532 1112368889
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 005975 283 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (666)
Q Consensus 283 ~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (666)
.|.....|++..+|.+|+..|+.+..+..+...|.+.++...|.+..+|+.
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999888766777777777777776643
No 91
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.02 E-value=2.7e-06 Score=86.60 Aligned_cols=184 Identities=22% Similarity=0.137 Sum_probs=128.4
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHH
Q 005975 39 NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPL 118 (666)
Q Consensus 39 ~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPl 118 (666)
..++|+++.||..|+..+ . ...|.+++.|+++.||..|.. ++ + .+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~----------~~~l~~L~~D~~~~VR~~aA~--~L-----------~----~~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P----------VEALTPLIRDSDEVVRRAVAY--RL-----------P----REQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C----------GGGGGGGTTCSSHHHHHHHHT--TS-----------C----SGG
T ss_pred HHhcCCCHHHHHHHHHhC-------C----------HHHHHHHccCcCHHHHHHHHH--HC-----------C----HHH
Confidence 445999999999998753 1 123678899999999988831 11 1 134
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 005975 119 LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMA 198 (666)
Q Consensus 119 L~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI 198 (666)
|...+.+.++.||..+...+ +. +.|..+++|++++||.++... +. .
T Consensus 103 L~~ll~D~d~~VR~~aA~~l------~~-----------~~L~~L~~D~d~~VR~~aA~~-------l~----------~ 148 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL------PL-----------EQLEQMAADRDYLVRAYVVQR-------IP----------P 148 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS------CT-----------GGGGGGTTCSSHHHHHHHHHH-------SC----------G
T ss_pred HHHHHcCCCHHHHHHHHHhC------CH-----------HHHHHHHcCCCHHHHHHHHHh-------cC----------H
Confidence 56667899999999988742 21 134567899999999998652 11 1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChH
Q 005975 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG 278 (666)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~ 278 (666)
+.+....+++++.+|..+..- +++ +.+...+.|++++||..+.... .
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~------l~~-----------~ll~~ll~D~d~~VR~aaa~~l-------~--------- 195 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKR------LPE-----------ESLGLMTQDPEPEVRRIVASRL-------R--------- 195 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH------SCG-----------GGGGGSTTCSSHHHHHHHHHHC-------C---------
T ss_pred HHHHHHHcCCCHHHHHHHHHc------CCH-----------HHHHHHHcCCCHHHHHHHHHhC-------C---------
Confidence 234456788999999988774 111 2334567899999999887641 1
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005975 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (666)
Q Consensus 279 ~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~l 343 (666)
.+.|...+.|++|.+|.++..-+. +..+..|.|++..|+..+.+-
T Consensus 196 --~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 196 --GDDLLELLHDPDWTVRLAAVEHAS------------------LEALRELDEPDPEVRLAIAGR 240 (244)
T ss_dssp --GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHCCCCCHHHHHHHHCC
T ss_pred --HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHccCCCHHHHHHHHHH
Confidence 134666688999999999988753 134455699999999877543
No 92
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.97 E-value=0.0018 Score=77.05 Aligned_cols=298 Identities=11% Similarity=-0.000 Sum_probs=181.4
Q ss_pred hhhhhhHHHhhhhhHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc--------hh
Q 005975 20 ADLFFYSETILQQIVPPVLNSFS---DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--------AN 88 (666)
Q Consensus 20 ~~~~~~~~~yl~~Il~pVL~~~~---D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d--------~~ 88 (666)
|++|-.-.-+.+..+..+-..+. ..+..+|.-|+.++.-|....+. ++++.|...+.+.+ +.
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHH
Confidence 34444444455666777777776 67889999999998877543332 34455554443333 56
Q ss_pred HHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCchhhhhchHHHHHHHHHh-cC
Q 005975 89 VQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNM-LS 165 (666)
Q Consensus 89 Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L-~svp~~~Li~yLp~fL~gLf~l-Ls 165 (666)
+|.|| ..|.-. ...++ =+..++.|.+.+++.++.+|.++.-.+..+ ....+.+. +..|+.. ..
T Consensus 453 ir~gAaLGLGla----~~GS~---~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a-------i~~LL~~~~e 518 (963)
T 4ady_A 453 LLHGASLGIGLA----AMGSA---NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA-------IHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHH----STTCC---CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCCC---CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH-------HHHHHHHHhc
Confidence 88777 333321 11111 134566677777778888888887777754 33333333 2233322 25
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh-
Q 005975 166 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP- 244 (666)
Q Consensus 166 D~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~- 244 (666)
|.+.+||+.+.-+|+-+. +++ .-..+.+++.|.. +.++.+|..++.-+. +...|.. -+..+..+|.
T Consensus 519 ~~~e~vrR~aalgLGll~--~g~--~e~~~~li~~L~~---~~dp~vRygaa~alg--lAyaGTG----n~~aIq~LL~~ 585 (963)
T 4ady_A 519 TQHGNITRGLAVGLALIN--YGR--QELADDLITKMLA---SDESLLRYGGAFTIA--LAYAGTG----NNSAVKRLLHV 585 (963)
T ss_dssp CSCHHHHHHHHHHHHHHT--TTC--GGGGHHHHHHHHH---CSCHHHHHHHHHHHH--HHTTTSC----CHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhh--CCC--hHHHHHHHHHHHh---CCCHHHHHHHHHHHH--HHhcCCC----CHHHHHHHHHH
Confidence 678889999878777553 111 1234455555443 578899988776664 2222222 1455554444
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHH
Q 005975 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ-LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 323 (666)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~-L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p 323 (666)
+.+|.++++|..|..+.+.+. ++++ +.++.+..+ ..+.++.+|.+|...++.+.-+.|. +.++.
T Consensus 586 ~~~d~~d~VRraAViaLGlI~--~g~~-------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid 650 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALGFVL--LRDY-------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAID 650 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHT--SSSC-------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHH
T ss_pred hccCCcHHHHHHHHHHHHhhc--cCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHH
Confidence 456888999988877664331 1221 233333333 3577899999999999998876653 45666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhc--cc---hHHHHHHHHHhhcc
Q 005975 324 TLLKALSDPSDEVVLLVLEVHACIAKD--LQ---HFRQLVVFLVHNFR 366 (666)
Q Consensus 324 ~LL~~LsD~s~eVv~~~l~lLa~Is~~--~~---~F~~fm~~LL~lf~ 366 (666)
.|-+.+.|+++.|+..+...|+.|..+ +. ....|...|.+...
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 677778999999999999999999942 22 34445554444443
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.92 E-value=0.0015 Score=65.48 Aligned_cols=222 Identities=18% Similarity=0.079 Sum_probs=169.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005975 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (666)
Q Consensus 115 fIPlL~eri~~~np~vR~~alswL~~L~sv-p~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d 193 (666)
-+-.|.+.+++.|+.++..++..|.-+.+- |+.-=..-+.++||.+.+++.+.|.-|--.|..||+.+++.++- ..-+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL-~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM-GSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB-CHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC-CHHH
Confidence 455667777999999999999999988774 45544567889999999999999999999999999999986632 1236
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCC
Q 005975 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~ 273 (666)
|..+++.|..-..++++..+..|.+-++.+ ......|+++..+...+...+++++.+|-.+..++...-.+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--- 183 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--- 183 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS---
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC---
Confidence 899999999999999999999888877644 34556799999999999888999998888776555433322
Q ss_pred CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChHHHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 005975 274 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACI 347 (666)
Q Consensus 274 ~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~i~~~l~~l~p~LL~~Ls--D~s~eVv~~~l~lLa~I 347 (666)
.-.+..++.-+...+.++++..+.-||.-+-.++.. -++++.+-+-++.. ..+.|. ...|.++.+|-.+...+
T Consensus 184 ~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 184 SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR-IVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH-HHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH-HHHHHHHhcCChhHHHHHHHHHHHH
Confidence 223578888899999999999999999988877665 34444444444433 335554 45688888876665554
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.91 E-value=0.0041 Score=60.21 Aligned_cols=216 Identities=14% Similarity=0.172 Sum_probs=148.9
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhh
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--ANVQSAAHLLDRLVKDIV 104 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d--~~Vr~gA~~LdrLlKDIv 104 (666)
+.|=..++..++..+.|.-|-||+-|...+.+|++-..+-+.+ +.+.|+-++.-++ +-.++-|..+..+.+
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep----l~~kL~vm~~ksEaIpltqeIa~a~G~la~--- 99 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAK--- 99 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH----HHHHHHHHHhhcccCchHHHHHHHHhHHHH---
Confidence 4678889999999999999999999999888887643333333 3444554432222 222444444444433
Q ss_pred cccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 105 ~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
..++ -+...+|.+.+-....+|++|-..-..+.-+....+ ..++.++..++.|++|++..=|-+|-+ |+.
T Consensus 100 -i~Pe-~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLn----Fi~ 169 (253)
T 2db0_A 100 -EKPE-LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALN----FIE 169 (253)
T ss_dssp -HCHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHH----HHH
T ss_pred -hCHH-HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHH----HHH
Confidence 2222 367889999999999999999888777765543322 246777777888999999777776644 444
Q ss_pred HhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHH
Q 005975 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (666)
Q Consensus 185 eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L 264 (666)
.++....-....+.|-|..-+++.|+-+|-.|.+.+..+....+ -+-+++...+.-+.|....+.....+....+
T Consensus 170 alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 170 AMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44332111245677888888999999999999999987776543 3566777777888888877776666655544
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.82 E-value=0.00025 Score=78.82 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=163.0
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-----hhhhhHHHHHHHHHH--------hhcCC-chhHHHHH-HHHH
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-----DFIIFFNQIFDALCK--------LSADS-DANVQSAA-HLLD 97 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-----~il~~f~eIfd~L~k--------l~~D~-d~~Vr~gA-~~Ld 97 (666)
+...++.-+-|+.|.+|.-|+.+|-.|.|.... ..... +-...-+|- .++|. =+-||+.| ++|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 667788889999999999999999999987431 11111 122222332 23443 35788888 7888
Q ss_pred HHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHH
Q 005975 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS 177 (666)
Q Consensus 98 rLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~ 177 (666)
.+ +-+..+ + ..+-.+........|++|...+--+.-+ .+++.-+|.+++.+..-|.|++.|||..|..
T Consensus 254 aL-~hLp~e---~---~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 254 RI-YPLIGP---N---DIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HH-TTTSCS---C---CHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH-HhCChh---H---HHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 87 533332 1 2222222344668899999888777766 4444448999999999999999999999988
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHH
Q 005975 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR--LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (666)
Q Consensus 178 ~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~ir--l~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~ 255 (666)
+|--+. ....++.++.++..++.+-|+... -..+.-+..++..+...-. .|.++|.+.|++.++-.+||.
T Consensus 322 tLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 322 LLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHH
T ss_pred Hhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHH
Confidence 766555 123589999999999987765322 2235566666776653222 369999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCChHhHHHHHHHh-cCCCcHHHHHHHHH
Q 005975 256 VARETNEELRAIKADPADGFDVGPILSIATRQ-LSSEWEATRIEALH 301 (666)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~-L~~~~~~tR~aaL~ 301 (666)
++.++...++ .+.++..+-+. +-.++++++..+++
T Consensus 394 AVL~TL~tfL-----------~~~~LRLIFQNILLE~neeIl~lS~~ 429 (800)
T 3oc3_A 394 SILNMVKNLS-----------EESIDFLVAEVVLIEEKDEIREMAIK 429 (800)
T ss_dssp HHHHHTTTCC-----------CHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------hhhHHHHHHHHHHhCCcHHHHHHHHH
Confidence 9888764443 25666655444 34667778877775
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.68 E-value=5.5e-05 Score=68.47 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=69.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccH
Q 005975 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (666)
Q Consensus 34 l~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L 112 (666)
++.++..+.|+|+.||..|+.+|.++.. ++.++.|.+++.|+++.||.+| .+|.++- -
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~ 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------G 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------S
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c
Confidence 5889999999999999999999877631 3557788888899999999988 6666541 2
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWIT 139 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~ 139 (666)
+..+|.|.+.+.+.|+.+|..++..+.
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456888888899999999999988764
No 97
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.56 E-value=0.035 Score=68.31 Aligned_cols=326 Identities=10% Similarity=0.071 Sum_probs=178.5
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc--c---hhhhhHH-HHHHHHHHhh--------cCCchhH-HHHHHHH
Q 005975 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--G---DFIIFFN-QIFDALCKLS--------ADSDANV-QSAAHLL 96 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r--~---~il~~f~-eIfd~L~kl~--------~D~d~~V-r~gA~~L 96 (666)
.+++-++..+.| +.+|..|+++|..|+..-. + .++..+. ..+..+.... .|.+.++ |+-++++
T Consensus 249 ~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll 326 (1204)
T 3a6p_A 249 KLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVL 326 (1204)
T ss_dssp HHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHH
Confidence 366667766665 5689999999999975321 1 2223331 1122333322 1112222 3333444
Q ss_pred HHHHHHhhc---c----cccccHhhhHHHHHHhhcCCCHHHHHHHH-HHHHHhhcC---CchhhhhchHHHHHHH---HH
Q 005975 97 DRLVKDIVT---E----SDQFSIEEFIPLLRERMNVLNPYVRQFLV-GWITVLDSV---PDIDMLGFLPDFLDGL---FN 162 (666)
Q Consensus 97 drLlKDIv~---e----~~~f~L~~fIPlL~eri~~~np~vR~~al-swL~~L~sv---p~~~Li~yLp~fL~gL---f~ 162 (666)
..+...++. . .....+..|++.+.+++.+++..+-..++ -|...+... ....+.++++.+++.+ +.
T Consensus 327 ~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~ 406 (1204)
T 3a6p_A 327 CALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLV 406 (1204)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 444333322 1 13446889999999999998888888877 466666542 2334667899998888 32
Q ss_pred hcCCC-----------------Ch-------hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCC----------
Q 005975 163 MLSDS-----------------SH-------EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP---------- 208 (666)
Q Consensus 163 lLsD~-----------------~~-------eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~---------- 208 (666)
-+.-| +. +-|+.....++...... |..-+..+.+.+...+.+.
T Consensus 407 k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~---p~~~l~~v~~~l~~~l~~~l~~~~~~~~~ 483 (1204)
T 3a6p_A 407 KMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD---PKTSFQMAGEWLKYQLSTFLDAGSVNSCS 483 (1204)
T ss_dssp CCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHTCC----------
T ss_pred HhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 22111 11 12333323232222211 1112334445554444321
Q ss_pred -------------CH-----HHHHHHHHHHHHHH-HhcCcccccchH-hHHHHHhhhh---cCCcHHHHHHHHHHHHHHH
Q 005975 209 -------------DE-----FTRLTAITWINEFV-KLGGDQLVPYYA-DILGAILPCI---SDKEEKIRVVARETNEELR 265 (666)
Q Consensus 209 -------------d~-----~irl~Al~WL~~~i-~l~~~~l~pylp-~lL~~LL~~L---sd~~~eIR~~A~~~n~~L~ 265 (666)
++ +....+++.+..-+ .... .++++ .+++.+++.+ ..++|.+|..+..+.+.+.
T Consensus 484 ~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e---~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~ 560 (1204)
T 3a6p_A 484 AVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN---REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF 560 (1204)
T ss_dssp -------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC---TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHG
T ss_pred ccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc---cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 11 11223344443322 2221 13333 2444444432 3468899999988888877
Q ss_pred HhhCCCCCCCChHhHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 005975 266 AIKADPADGFDVGPILSIATRQLSS------------EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (666)
Q Consensus 266 ~~i~~~~~~~dl~~il~~L~~~L~~------------~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (666)
......+ -.+..+++.+...+.+ .+..+|.+|-..+..+.+.|++.+.+|++.+...+-..++...
T Consensus 561 ~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 561 PFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp GGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTT
T ss_pred HHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcc
Confidence 7665322 1256777766655543 2346899999999999999999999999999987766554221
Q ss_pred -----HHH-HHHHHHHHHHHh----hccchHHHHHHHHHhhccc
Q 005975 334 -----DEV-VLLVLEVHACIA----KDLQHFRQLVVFLVHNFRV 367 (666)
Q Consensus 334 -----~eV-v~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~ 367 (666)
+.+ ...++-+++.-. ....|++.++..+++.+.+
T Consensus 639 ~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 639 LLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 222 223333333211 1235577788887776654
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.43 E-value=7.3e-05 Score=76.00 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=112.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhH
Q 005975 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFI 116 (666)
Q Consensus 37 VL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fI 116 (666)
+...+.|++++||+.|+..+ .. +.|.+++.|+++.||.++.. ++ +.
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-------~~----------~~L~~ll~D~d~~VR~~aA~--~l-----------~~---- 124 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-------PR----------EQLSALMFDEDREVRITVAD--RL-----------PL---- 124 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CS----------GGGGGTTTCSCHHHHHHHHH--HS-----------CT----
T ss_pred HHHHccCcCHHHHHHHHHHC-------CH----------HHHHHHHcCCCHHHHHHHHH--hC-----------CH----
Confidence 44555899999999998642 11 34678899999999988722 21 11
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 005975 117 PLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR 196 (666)
Q Consensus 117 PlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~ 196 (666)
+.+.....++++.||..+..- ++. +.+..++.|++++||..+... +.
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~~------l~~-----------~~l~~l~~D~d~~VR~~aa~~-------l~--------- 171 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQR------IPP-----------GRLFRFMRDEDRQVRKLVAKR-------LP--------- 171 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHHH------SCG-----------GGGGGTTTCSCHHHHHHHHHH-------SC---------
T ss_pred HHHHHHHcCCCHHHHHHHHHh------cCH-----------HHHHHHHcCCCHHHHHHHHHc-------CC---------
Confidence 123344688999999999872 221 123467899999999988663 11
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 005975 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 276 (666)
Q Consensus 197 iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d 276 (666)
.+.+.....+++..+|..+..-+ + .+.+...+.|++..||..+.+..+
T Consensus 172 -~~ll~~ll~D~d~~VR~aaa~~l------~-----------~~~L~~Ll~D~d~~VR~~aa~~l~-------------- 219 (244)
T 1lrv_A 172 -EESLGLMTQDPEPEVRRIVASRL------R-----------GDDLLELLHDPDWTVRLAAVEHAS-------------- 219 (244)
T ss_dssp -GGGGGGSTTCSSHHHHHHHHHHC------C-----------GGGGGGGGGCSSHHHHHHHHHHSC--------------
T ss_pred -HHHHHHHHcCCCHHHHHHHHHhC------C-----------HHHHHHHHcCCCHHHHHHHHHcCC--------------
Confidence 13444566899999999888642 1 145667789999999998877531
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHW 302 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~W 302 (666)
.+.|... .|++|.+|.++..-
T Consensus 220 ----~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 220 ----LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp ----HHHHHHC-CCCCHHHHHHHHCC
T ss_pred ----HHHHHHc-cCCCHHHHHHHHHH
Confidence 2445444 89999999998753
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.38 E-value=0.0012 Score=73.55 Aligned_cols=232 Identities=11% Similarity=0.128 Sum_probs=156.4
Q ss_pred cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh--hhhchH-HHHHHH-H--------HhcCCC-ChhHHHHH
Q 005975 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--MLGFLP-DFLDGL-F--------NMLSDS-SHEIRQQA 175 (666)
Q Consensus 109 ~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~--Li~yLp-~fL~gL-f--------~lLsD~-~~eVR~~A 175 (666)
..+.+ |...|..-+-+++|++|-.|.-.+..+....+.. -....+ ++.-.| + .+.+|. ..-||..|
T Consensus 170 eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 170 ENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp CSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred CCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHH
Confidence 45667 9999999999999999999998888776554310 001111 223222 2 345553 34699999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHH
Q 005975 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (666)
Q Consensus 176 ~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~ 255 (666)
+++|+.+ .-+.. + -.++..|+..+..++=++|.-++--|+-+ .+++.=++.++++++.+|.|.+++||.
T Consensus 249 AQtLGaL-~hLp~----e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRA 317 (800)
T 3oc3_A 249 AYLLSRI-YPLIG----P-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKL 317 (800)
T ss_dssp HHHHHHH-TTTSC----S-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHH-HhCCh----h-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHH
Confidence 9999997 43322 2 35666666666777888998777666654 233323899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCC
Q 005975 256 VARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (666)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (666)
+|+.+..-+. . .-.++.+++++=..|. ++-...--+.++.|..++..-+. ....+.++|.|.+.|.++-
T Consensus 318 VAAetLiPIA----~---p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI 388 (800)
T 3oc3_A 318 LSAELLCHFP----I---TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV 388 (800)
T ss_dssp HHHHHHTTSC----C---SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS
T ss_pred HHHHHhhhhc----c---hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc
Confidence 9988753322 1 1225666666555553 22333455666677777766532 2233488899999999999
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 005975 334 DEVVLLVLEVHACIAKDLQHFRQLVVFLV 362 (666)
Q Consensus 334 ~eVv~~~l~lLa~Is~~~~~F~~fm~~LL 362 (666)
..||..+++++..+. +...|+.+.++++
T Consensus 389 TSVR~AVL~TL~tfL-~~~~LRLIFQNIL 416 (800)
T 3oc3_A 389 PEVRTSILNMVKNLS-EESIDFLVAEVVL 416 (800)
T ss_dssp HHHHHHHHHHTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 999999999888777 4555666665554
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.32 E-value=0.03 Score=59.82 Aligned_cols=224 Identities=14% Similarity=0.084 Sum_probs=150.9
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005975 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (666)
Q Consensus 156 fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~---d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~ 232 (666)
.++. .+.++|+.-+.|+. ..++.+++-.+-...++ +...+-.-+++.++++|...|.-.--.+.++.+...+. +
T Consensus 27 v~qe-~r~fn~~~~~~~kc-~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~-i 103 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKC-AHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV-I 103 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHH-HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG-G
T ss_pred HHHH-HHHhcCCCCcHHHH-HHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH-H
Confidence 5666 47889987777763 35677777666443222 24556677888999999999887766666666664332 2
Q ss_pred cchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChH
Q 005975 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 233 pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~ 312 (666)
-+...+.+-+.++++-+|..|-++...+. + .-=++.+.+.+.+.+.|.+..+|-+|+--...++...|+
T Consensus 104 ----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~----~---~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe 172 (355)
T 3tjz_B 104 ----IVTSSLTKDMTGKEDSYRGPAVRALCQIT----D---STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD 172 (355)
T ss_dssp ----GGHHHHHHHHHSSCHHHHHHHHHHHHHHC----C---TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH
T ss_pred ----HHHHHHHhhcCCCcHhHHHHHHHHHhcCC----C---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH
Confidence 46778888999999999999998876652 1 111578888999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh--
Q 005975 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-- 389 (666)
Q Consensus 313 ~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~-~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~-- 389 (666)
-+.. .+..+-..++|+++-|+-.++.+|..|..++. .+.+++..+-+.-.. ....++ .+||-+......
T Consensus 173 ~v~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~-~~~~q~---~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 173 VVKR----WVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLK-SPFAYC---MMIRVASRQLEDED 244 (355)
T ss_dssp HHHT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCS-CHHHHH---HHHHHHTCC-----
T ss_pred HHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCc-ChHHHH---HHHHHHHHhccccc
Confidence 8765 45566677899999999999999999997543 455554444321000 233332 367755444322
Q ss_pred ----HHHHHHHHHhhc
Q 005975 390 ----ERVYRELSTILE 401 (666)
Q Consensus 390 ----E~Iy~~la~iL~ 401 (666)
+.++..+..+|.
T Consensus 245 ~~~~~~~~~~l~~~L~ 260 (355)
T 3tjz_B 245 GSRDSPLFDFIESCLR 260 (355)
T ss_dssp ------------CCCC
T ss_pred hhhHHHHHHHHHHHHc
Confidence 345555555554
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.29 E-value=0.0078 Score=60.48 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=106.4
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~k-l~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
-.+++++-.....+|+...||++|+..+... + ...++++.+-. +..|..-.|++.+ ..++.+++.
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~----~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~---- 134 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL----S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK---- 134 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT----T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc----c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh----
Confidence 3678888888889999999999999965433 1 22567888876 7788888999987 667766651
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~ 184 (666)
...+..+|.+.+-..+.|+.+|..+++-+....+.| .+......+++-|-.+.+|++.=||++....|.+.-+
T Consensus 135 ---~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 135 ---IEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ---HCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ---cCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 234457888889999999999999998876544443 2345566677778889999999999999888888775
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.18 E-value=0.00098 Score=80.30 Aligned_cols=319 Identities=13% Similarity=0.137 Sum_probs=177.6
Q ss_pred HHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc----hhhhhHHHHHHHHHHhhc-CCch-hHHHHHHHHHHHH
Q 005975 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIFFNQIFDALCKLSA-DSDA-NVQSAAHLLDRLV 100 (666)
Q Consensus 27 ~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~----~il~~f~eIfd~L~kl~~-D~d~-~Vr~gA~~LdrLl 100 (666)
...++.+.+.+-.-..|.|..-...|+|.+.-++.+.+. ..-..|+-+.+.|-+.++ +-.+ ++.....+ +
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~----i 578 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTL----A 578 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHH----H
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH----H
Confidence 345777888887877898988899999987777654442 223567777888888887 3444 33433333 3
Q ss_pred HHhhcccccccHhhhHHHHHHhh---c------CCCH---HHHHHHH-HHHHHhhcCCchhhhhchHHHHHHHHHhcCCC
Q 005975 101 KDIVTESDQFSIEEFIPLLRERM---N------VLNP---YVRQFLV-GWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (666)
Q Consensus 101 KDIv~e~~~f~L~~fIPlL~eri---~------~~np---~vR~~al-swL~~L~svp~~~Li~yLp~fL~gLf~lLsD~ 167 (666)
.-+....+ ...+= .|.+.+ . +.++ ..|..++ +.+..+.--.+ .+..+++.++ ++.+
T Consensus 579 ~~~~~~~D---prR~~-~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~-----~~~~~l~~~~--l~h~ 647 (997)
T 1vsy_5 579 WWLPAVVD---LRRSK-TFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP-----DVGKLFDELV--FDHP 647 (997)
T ss_dssp HHHHHHSC---GGGCH-HHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC-----CCHHHHHHCC--SCCS
T ss_pred HHHhcCCC---hhhhH-HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc-----cHHHHHHHHH--hCCC
Confidence 33333222 22222 333322 1 1111 1132222 33333322111 1345555555 7889
Q ss_pred ChhHHHHHHHHHHHHHHHh---------------hcC-CC---------CCHHHHHHHHHHhcC---------CC-----
Q 005975 168 SHEIRQQADSALWEFLQEI---------------KNS-PS---------VDYGRMAEILVQRAA---------SP----- 208 (666)
Q Consensus 168 ~~eVR~~A~~~L~~fL~eI---------------~~~-~~---------~d~~~iI~iLl~~~~---------s~----- 208 (666)
...||.+....|..+...- ... .. ..+.+.+.-+.+.+. ++
T Consensus 648 y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~ 727 (997)
T 1vsy_5 648 YDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIK 727 (997)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTT
T ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccch
Confidence 9999998877775444322 111 00 011111212222222 11
Q ss_pred CHH--HHHHHHHHHHHHHHhcC-cccccchHh-HHHHHhhhhcCCcH-HHHHH-HHHHHHHHHHhhCC-CCCCCChHhHH
Q 005975 209 DEF--TRLTAITWINEFVKLGG-DQLVPYYAD-ILGAILPCISDKEE-KIRVV-ARETNEELRAIKAD-PADGFDVGPIL 281 (666)
Q Consensus 209 d~~--irl~Al~WL~~~i~l~~-~~l~pylp~-lL~~LL~~Lsd~~~-eIR~~-A~~~n~~L~~~i~~-~~~~~dl~~il 281 (666)
... .-.|.+.||...+.-+. ..+.||+|. ++|.++.+...++. |+... |..+. ..+.. +-..-..+.++
T Consensus 728 s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l----~~ls~~~~~~~~~~~~l 803 (997)
T 1vsy_5 728 TDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLY----AGLGYMPIRKNHVAAIV 803 (997)
T ss_dssp SHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHH----HHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHH----HHHhcCCCCHHHHHHHH
Confidence 122 24678889986554432 337899998 99999988877765 55554 43332 22221 00111135677
Q ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHh-hhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhcc---chHH
Q 005975 282 SIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL---QHFR 355 (666)
Q Consensus 282 ~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~-~~l~~l~p~LL~~LsD~s-~eVv~~~l~lLa~Is~~~---~~F~ 355 (666)
+.+.+... +++| +|.++|..+-.++-..-=-+. ..-..++..+++.|.|+. -|||..|-.+|+-+.... ..-+
T Consensus 804 ~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~ 882 (997)
T 1vsy_5 804 DYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL 882 (997)
T ss_dssp HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH
Confidence 77766555 5789 999999987544432100000 112467888999999999 999999999999886433 2223
Q ss_pred HHHHHHHhhc
Q 005975 356 QLVVFLVHNF 365 (666)
Q Consensus 356 ~fm~~LL~lf 365 (666)
.++..+-+.|
T Consensus 883 ~li~~f~~~~ 892 (997)
T 1vsy_5 883 SLIERFAKGL 892 (997)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.91 E-value=0.0047 Score=74.45 Aligned_cols=309 Identities=10% Similarity=0.117 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh--
Q 005975 4 WYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-- 81 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl-- 81 (666)
.++++-.++.+..|.+... .+.++..+ ++.+-..||...+..+..+.........+...+++++....
T Consensus 617 rl~ll~~~l~~~~wr~~~~----~~~l~~~~------l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~ 686 (997)
T 1vsy_5 617 KIYMLRSILMSMEFRAPDV----GKLFDELV------FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPD 686 (997)
T ss_dssp SHHHHHHHHHHHTTSSCCC----HHHHHHCC------SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHhccccccH----HHHHHHHH------hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccc
Confidence 3566677788888876643 33333333 78888999999999998887543211111112222221100
Q ss_pred ---h--cCCchhHHHHHHHHHHHHHHhhcccc---cccHhhhHHHHHHhhcCCCHHH--HHHHHHHHHHhhcCCc-hhhh
Q 005975 82 ---S--ADSDANVQSAAHLLDRLVKDIVTESD---QFSIEEFIPLLRERMNVLNPYV--RQFLVGWITVLDSVPD-IDML 150 (666)
Q Consensus 82 ---~--~D~d~~Vr~gA~~LdrLlKDIv~e~~---~f~L~~fIPlL~eri~~~np~v--R~~alswL~~L~svp~-~~Li 150 (666)
+ .+..+.+.+. +..+.+.+-...+ ...-.. ...+..+ -..++.|+.....-+. ..+.
T Consensus 687 ~~~~~~~~~~~~~~~~---i~~~f~~l~~~~~~~~~~~~~~---------~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~ 754 (997)
T 1vsy_5 687 GLGLPLKSVPEKVDAY---IKKQFEIIKNLEDSVVGLNPQQ---------FIKTDYFYRTSTIFYWIKEMARGPNKVLLV 754 (997)
T ss_dssp SSCCCSSCCCHHHHHH---HHHHHHHHTGGGGTTSSCCSTT---------TTTSHHHHHHHHHHHHHHHHSSGGGHHHHH
T ss_pred cccCccccCcchHHHH---HHHHHHHHHHhhhcccccCccc---------cchHHHHHHHHHHHHHHHHHhcCCCccchh
Confidence 0 0111222111 1111111111000 000000 0012223 3678899987765553 4588
Q ss_pred hchHH-HHHHHHHhcCCCCh-hHHHH-HHHHHHHHHHHhhcCCCC--CHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Q 005975 151 GFLPD-FLDGLFNMLSDSSH-EIRQQ-ADSALWEFLQEIKNSPSV--DYGRMAEILVQRAA-SPDEFTRLTAITWINEFV 224 (666)
Q Consensus 151 ~yLp~-fL~gLf~lLsD~~~-eVR~~-A~~~L~~fL~eI~~~~~~--d~~~iI~iLl~~~~-s~d~~irl~Al~WL~~~i 224 (666)
+|+|. +++.|+.+..+.+. |..+. |..+ +..+...+.. ..+.++..+..... ++.- +|..++..+..|.
T Consensus 755 ~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~----l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~ 829 (997)
T 1vsy_5 755 PYLVDYVLPFLIGLVKHKDVCALASLDPVRL----YAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL 829 (997)
T ss_dssp HHHTTTTTTTTCTTSSCSHHHHHTTCCSHHH----HHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCcHHHHHhhHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH
Confidence 89998 89999998877754 44444 3333 3334332222 24556666655444 3455 8888888876665
Q ss_pred Hh-----cCcccccchHhHHHHHhhhhcCCc-HHHHHHHHHHHHHHHHhh-CCCCCCCChHhHHHHHHHhcCC-------
Q 005975 225 KL-----GGDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIK-ADPADGFDVGPILSIATRQLSS------- 290 (666)
Q Consensus 225 ~l-----~~~~l~pylp~lL~~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i-~~~~~~~dl~~il~~L~~~L~~------- 290 (666)
-- .... -.+|...++.+|.|+. .|||+.|..+...+++.. .. ....+++..+.+.+..
T Consensus 830 f~n~f~l~~~~----~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~----~~~~~li~~f~~~~~~~~~~~~~ 901 (997)
T 1vsy_5 830 SAELLQLTEEE----KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE----QPLLSLIERFAKGLDVNKYTSKE 901 (997)
T ss_dssp HHHTTTSCTTH----HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH----HHHHHHHHHHTTSSTTTSSCHHH
T ss_pred HHHHHHcCHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhccccccc
Confidence 42 2221 2688999999999999 999999999998887764 20 1122444444444422
Q ss_pred -----CcHHHHHHHHHHHHHHHhhChHHH--hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 291 -----EWEATRIEALHWISTLLNRHRTEV--LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 291 -----~~~~tR~aaL~WL~~L~~~~p~~i--~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
.....|-+|..-|+++..-+|=.+ =+++|+++..|-...+|+.+ |...+-.+++.+-
T Consensus 902 ~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFk 965 (997)
T 1vsy_5 902 RQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFK 965 (997)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHH
Confidence 112578999999999999999887 68888988888778888665 6666667787766
No 104
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.72 E-value=0.0056 Score=61.62 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=117.5
Q ss_pred HHHHHHHhcCCCCH--HHHHHHHHHHHHHHHhcCc-ccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCC
Q 005975 197 MAEILVQRAASPDE--FTRLTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (666)
Q Consensus 197 iI~iLl~~~~s~d~--~irl~Al~WL~~~i~l~~~-~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~ 273 (666)
-+|.++..+.++++ .++..|..++..+..-.+. .-.=.-.+.+|.+...|..++++++..|..+...+..--.+...
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46777888888887 8888898888876654321 10111235679999999999999999999887766421000000
Q ss_pred CCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhCh--HHHhhhhHHHHHHHHHhcC-------C---------CCH
Q 005975 274 GFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHR--TEVLHFLNDIFDTLLKALS-------D---------PSD 334 (666)
Q Consensus 274 ~~dl~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p--~~i~~~l~~l~p~LL~~Ls-------D---------~s~ 334 (666)
.+--...++.|.+.|. +.++.+|+.|...|..|..... ..+. ..-+|.|...+. | .++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~---~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI---TEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH---HHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH---hccHHHHHHHHhccccCCcccccccccccchH
Confidence 0000245667777775 4678888888766666655433 3333 334677766542 1 256
Q ss_pred HHHHHHHHHHHHHhhccchHHH-------HHHHHHhhccc-------cchhhhhHHHHHHHHHhccCC
Q 005975 335 EVVLLVLEVHACIAKDLQHFRQ-------LVVFLVHNFRV-------DNSLLEKRGALIIRRLCVLLD 388 (666)
Q Consensus 335 eVv~~~l~lLa~Is~~~~~F~~-------fm~~LL~lf~~-------d~~lLe~Rg~~IIR~Lc~~L~ 388 (666)
+|...+..+|..+|+.++..++ .+..|+.+++. +.+..|. .--++|+||..|.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En-~v~~L~nLs~~~~ 232 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATEN-CVCILHNLSYQLE 232 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHH-HHHHHHHHHhhhc
Confidence 8999999999999964434444 34445555443 3344443 3558999998764
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.60 E-value=0.0017 Score=75.21 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=85.6
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH-HHHHhhcCCchhHHHHH-HHHHHHHHHhhccc-cc
Q 005975 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFD-ALCKLSADSDANVQSAA-HLLDRLVKDIVTES-DQ 109 (666)
Q Consensus 33 Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd-~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~-~~ 109 (666)
-+.|++..+..+|+..|..||.++.||+......-+..-..++. .+..++.|++..||.+| .+|..++.+-..+. ..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 34578888999999999999999999986433222222234444 45678999999999999 78888765321110 00
Q ss_pred ccHhhhHHHHHHhh-------cCC-------CHH-------HHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcC--
Q 005975 110 FSIEEFIPLLRERM-------NVL-------NPY-------VRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLS-- 165 (666)
Q Consensus 110 f~L~~fIPlL~eri-------~~~-------np~-------vR~~alswL~~L~svp~~~Li~-yLp~fL~gLf~lLs-- 165 (666)
.--..++|.|...+ ... ... +-..+++.+..+....+..+-. .-...++.|+..+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 00111344443333 211 111 1123455555555444332211 01133444444442
Q ss_pred -CCChhHHHHHHHHHHHHHH
Q 005975 166 -DSSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 166 -D~~~eVR~~A~~~L~~fL~ 184 (666)
....+|+..|.+||..+.+
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHhc
Confidence 2356899999999987764
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.52 E-value=0.089 Score=52.82 Aligned_cols=154 Identities=15% Similarity=0.031 Sum_probs=112.0
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHH-hcCCCChhHHHHHHHHHHHHHHHhhc
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN-MLSDSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~-lLsD~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
.+++.++++..+...+..-.+|..++..+..+ . ..++.|+-+-. +..|.+=.||..++.+++.++...
T Consensus 67 ~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~-- 135 (240)
T 3l9t_A 67 NDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI-- 135 (240)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc--
Confidence 45888999999988888889999999988766 2 34667777776 667899999999999999888633
Q ss_pred CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
+.+..++.+..-+.++|+.+|..|++-+.-+... ..+..-...++|.|-+...|++.-||+........+.+
T Consensus 136 ----~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK-- 207 (240)
T 3l9t_A 136 ----EYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK-- 207 (240)
T ss_dssp ----CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT--
T ss_pred ----CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh--
Confidence 2334778888889999999999988855432222 12334456678888888889999999887766544332
Q ss_pred CCCCCCCChHhHHHHHHHhc
Q 005975 269 ADPADGFDVGPILSIATRQL 288 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L 288 (666)
-|-+-+...+....
T Consensus 208 ------~~Pd~V~~~~~~w~ 221 (240)
T 3l9t_A 208 ------KFPDLVKIELKNWK 221 (240)
T ss_dssp ------TCHHHHHHHHHTCC
T ss_pred ------hCHHHHHHHHHHhh
Confidence 22345555555554
No 107
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.52 E-value=0.13 Score=56.46 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=115.3
Q ss_pred hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005975 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 148 ~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~-~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l 226 (666)
.+..+-.+|...|- ..-.++.+++.|.+.+.+|-+.++ ++ +.-++.+++-|.+.|..||..|+.-|- .+
T Consensus 23 k~~~~~~~y~~Il~--~~kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp---~~ 92 (507)
T 3u0r_A 23 QVGQHKDAYQVILD--GVKGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDEDVSIRRQAIKELP---QF 92 (507)
T ss_dssp GGGGGHHHHHHHHH--GGGSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGG---GG
T ss_pred cccccHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcccHHHHHHHHHhhH---HH
Confidence 34445555544333 233458899999999999987653 33 567889999999999999998877665 44
Q ss_pred cCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005975 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (666)
Q Consensus 227 ~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L 306 (666)
+.+ .+++++..+|.++|.-.++.-+.+..++.-++++. |-..++..+..++..+++.+|+.++.+|..=
T Consensus 93 ck~---~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~--------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 93 ATG---ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM--------DAKGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp CCT---TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hhh---hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 444 67999999999999988877777777776666654 3357777777777767899999999999766
Q ss_pred HhhChHHHh-hhhH-HHHHHHHHhcCCCCH
Q 005975 307 LNRHRTEVL-HFLN-DIFDTLLKALSDPSD 334 (666)
Q Consensus 307 ~~~~p~~i~-~~l~-~l~p~LL~~LsD~s~ 334 (666)
....+.++. .-.+ -++..+.+.|.|-+.
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 555443332 1111 134445566666553
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.12 E-value=0.043 Score=55.09 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=99.0
Q ss_pred hhHHHHHhhcCCCCH--HHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhc
Q 005975 32 QIVPPVLNSFSDQDS--RVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (666)
Q Consensus 32 ~Il~pVL~~~~D~d~--rVR~~A~eaL~nI~Kv~---r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~ 105 (666)
.-+|+++..+..+|. .++..|+.++.++++.- +..+. -...++.|..++.++++.++..| .+|..+..+--.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~--~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN--QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH--HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 357888999987777 89999999999988542 22221 12456889999988889998888 777777652111
Q ss_pred ccccccHhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-------C---------CC
Q 005975 106 ESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-------D---------SS 168 (666)
Q Consensus 106 e~~~f~L~~fIPlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLs-------D---------~~ 168 (666)
......-.--||.|.+.+. ..++.++..+++.+.++...+..-. .....-++.|..++. | .+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccch
Confidence 0111112335788888886 5799999999999999977654321 112234566655442 1 25
Q ss_pred hhHHHHHHHHHHHHH
Q 005975 169 HEIRQQADSALWEFL 183 (666)
Q Consensus 169 ~eVR~~A~~~L~~fL 183 (666)
.+|+..|..||..+-
T Consensus 165 ~~v~~na~~~L~nLs 179 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMS 179 (233)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 689888888887774
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.77 E-value=0.77 Score=46.67 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=87.8
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----H
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ----E 185 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~----e 185 (666)
.-++.|+|.+.+...+.+..+|+++++-|...... -..+.+..++.|..++.|.++.|-+.+..+...+-. .
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999988889999999999999765522 246899999999999999999998887777666543 3
Q ss_pred hhcCCCCC---------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005975 186 IKNSPSVD---------YGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 186 I~~~~~~d---------~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l 226 (666)
+-..+..+ +..+-..++....+.++-+|..|+..+..++..
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 33334321 345566777888888899999999999887754
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.98 E-value=4.8 Score=43.19 Aligned_cols=264 Identities=15% Similarity=0.139 Sum_probs=146.7
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~ 189 (666)
--++.|+|.+.+...+++..+|+++++.|...... -..+++..++.|..++.|.++.|-+.+..|...+-..+
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~--- 131 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVA--- 131 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH---
Confidence 34899999999999999999999999999866642 24568999999999999999999988877776655322
Q ss_pred CCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 190 PSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~d-~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
..++.. +++ ......+-+|+. .+-..|+..+...+.-||-.|.+..+.+.-..
T Consensus 132 --------f~~i~~---~~~~~~~~e~~W~~m~---------------~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 132 --------LQWMVK---SRVISELQEACWDMVS---------------AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp --------HHHHHH---C-CCCHHHHHHHHHHH---------------HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHhc---CCCcchhHHHHHHHHH---------------HHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 222222 221 111122223332 23334455555566788888888777665443
Q ss_pred CCCCCCCCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hhChHHHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 005975 269 ADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLL-NRHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVH 344 (666)
Q Consensus 269 ~~~~~~~dl-~~il~~L~~~L~~~~~~tR~aaL~WL~~L~-~~~p~~i~~~l~~l~p~LL~~LsD~--s~eVv~~~l~lL 344 (666)
.......+. .. . .+ ..+|.|+-.=| -..+..+..--.++|..||+.+.++ ++-.+..++..|
T Consensus 186 S~~~~d~~~p~~------~--~~------d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsL 251 (386)
T 3o2t_A 186 SPRMADSEIPRR------Q--EH------DISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSL 251 (386)
T ss_dssp SCCCTTCCCCGG------G--TT------SCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHH
T ss_pred CCCCCCcccccc------c--CC------CCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHH
Confidence 321110000 00 0 00 01111111000 0123445555667778888888753 354556677888
Q ss_pred HHHhh-ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHHHhccc
Q 005975 345 ACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTS 423 (666)
Q Consensus 345 a~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs 423 (666)
+-|.. ...+...++..|+.+-.+-..-+ .++. ++-+- ..+=..|..+|....-.+|...+.+.|..+--+-
T Consensus 252 a~Iak~RP~~~~rIl~aL~~l~~n~p~t~-sk~q--vkSv~-----KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~ 323 (386)
T 3o2t_A 252 ANIARQRPMFMSEVIQAYETLHANLPPTL-AKSQ--VSSVR-----KNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQ 323 (386)
T ss_dssp HHHHHHSGGGHHHHHHHHHHHHHCC-----CGGG--HHHHH-----HHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCH
T ss_pred HHHHHhcHHHHHHHHHHHHhhcCCCCccH-HHHH--HHHHH-----HHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccH
Confidence 88885 45566667777765322211111 1100 01000 0111223344444455688888888888755555
Q ss_pred hhHHH
Q 005975 424 SELSE 428 (666)
Q Consensus 424 ~El~~ 428 (666)
.|..+
T Consensus 324 ~Ei~~ 328 (386)
T 3o2t_A 324 AEIAR 328 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.75 E-value=0.57 Score=54.00 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=54.1
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch-hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~-~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~e 185 (666)
+.+.|+| +.+.+.++..|.++|..|.++..-+.. .++.+-.-+..-+-++++|++.+||.+|..+|+.+..+
T Consensus 34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3566665 568999999999999999999875432 23333333444456789999999999999999888753
No 112
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.70 E-value=3.2 Score=47.40 Aligned_cols=304 Identities=15% Similarity=0.104 Sum_probs=168.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc------------cc
Q 005975 43 DQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE------------SD 108 (666)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~r~~il-~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e------------~~ 108 (666)
..-..=|..|+.+|..++|..+.++- .-++.+++.|-+-..| ...-+++ +.|-.++..-..+ .+
T Consensus 33 ~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D--~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 33 STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSD--SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTC--HHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccccc--HHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 44567789999999888877665543 2244444444333222 2222233 3332221100000 00
Q ss_pred cccH------hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005975 109 QFSI------EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI---DMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (666)
Q Consensus 109 ~f~L------~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~---~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L 179 (666)
.... ..-|+.|.+.+...+-++|.+++..+..+...-+. +-+-.-|.=++.|..+|.|+..-||..|..+|
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 0011 34589999999999999999999999999865544 33444567788899999999999999988777
Q ss_pred HHHHHHhhcCC-----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--cc-c--ccchHhHHHHHhhhhcCC
Q 005975 180 WEFLQEIKNSP-----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--DQ-L--VPYYADILGAILPCISDK 249 (666)
Q Consensus 180 ~~fL~eI~~~~-----~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~--~~-l--~pylp~lL~~LL~~Lsd~ 249 (666)
..+.+.=.... +--|+.++.++-..-....-.+-.-|+.-+..+++..+ .. | ..++|++.+. +...
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~L----L~~~ 266 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPW----FEVG 266 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGG----GCCC
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH----hCCC
Confidence 77764111000 01144455555444333344666778888887776532 11 1 1233333322 2212
Q ss_pred cHH-----HHHHHHHHHHHHHHhhCCCCCCC-----C-----hHhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChH
Q 005975 250 EEK-----IRVVARETNEELRAIKADPADGF-----D-----VGPILSIATRQLSSE--WEATRIEALHWISTLLNRHRT 312 (666)
Q Consensus 250 ~~e-----IR~~A~~~n~~L~~~i~~~~~~~-----d-----l~~il~~L~~~L~~~--~~~tR~aaL~WL~~L~~~~p~ 312 (666)
+++ =|..-..+.-.+.+..-.+++.. + =..++..|.+.+.++ ...+|..|+.-+..++++.+.
T Consensus 267 ~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 267 DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 111 01000001112233332222210 0 124555666666554 467899999999999988754
Q ss_pred ---HHhhh-------hHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhccc
Q 005975 313 ---EVLHF-------LNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDLQ 352 (666)
Q Consensus 313 ---~i~~~-------l~~l~p~LL~~LsD~s-~eVv~~~l~lLa~Is~~~~ 352 (666)
.+... .+-++..|+..+.+.. .++|-.++.++..|..+..
T Consensus 347 ~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 347 NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 22221 1345555666565544 6678889999999985443
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.70 E-value=6.4 Score=43.32 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005975 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (666)
Q Consensus 75 fd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL 153 (666)
+..+..++.-+ +.+|.-| ..+.+..|+...- -+.=|.-+...+.+.|+.||..++--|-.++ .. .++
T Consensus 31 y~~Il~~~kg~-~k~K~LaaQ~I~kffk~FP~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~c---k~---~~i 98 (507)
T 3u0r_A 31 YQVILDGVKGG-TKEKRLAAQFIPKFFKHFPEL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFA---TG---ENL 98 (507)
T ss_dssp HHHHHHGGGSC-HHHHHHHHHHHHHHGGGCGGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGC---CT---TCH
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHh---hh---hhh
Confidence 34444444433 4455544 7888887755432 1223445566678899999998766655544 33 779
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005975 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (666)
Q Consensus 154 p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l 226 (666)
+.+.+.|.++|.-.++..+.++.++|..+++ .|-...+.-+..++.++++.+|..++..|.+-+.-
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-------~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFK-------MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 9999999999988888888999999988886 45555666666666667999999999998765543
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.50 E-value=4.7 Score=40.85 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh----
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK---- 268 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i---- 268 (666)
-++++++.++....+++.++|......|.+.+... ..+.+++++.+...+.|+++.+-+.+-.+...+.+.+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888999998888777766443 3478999999999999999988888887777665543
Q ss_pred CCCCCC-------CC-hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---------------------------hHH
Q 005975 269 ADPADG-------FD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRH---------------------------RTE 313 (666)
Q Consensus 269 ~~~~~~-------~d-l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~---------------------------p~~ 313 (666)
...+.. ++ +.++-+.+...+.+.+..+|.+|++++-.+.... +..
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~ 205 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREK 205 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHH
Confidence 222221 11 2344445666788889999999999988766321 123
Q ss_pred HhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhc-cchHHHHHH
Q 005975 314 VLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAKD-LQHFRQLVV 359 (666)
Q Consensus 314 i~~~l~~l~p~LL~~LsD~--s~eVv~~~l~lLa~Is~~-~~~F~~fm~ 359 (666)
+..--.+++..|++.+.++ ++-.+..++..|+-|... ..+...++.
T Consensus 206 Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~ 254 (257)
T 3gs3_A 206 LQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVE 254 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3334456777777776654 444555677778888754 334344443
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.48 E-value=1.2 Score=43.52 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=94.3
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 005975 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD--YGRMAEILVQRAA--SPDEFTRLTAITWINE 222 (666)
Q Consensus 147 ~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d--~~~iI~iLl~~~~--s~d~~irl~Al~WL~~ 222 (666)
.|+..|+.++-+.+.. +.|++| ++.+...++.+ ++.++..+.+... -.|-..-...+..+..
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~a-------L~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~A 72 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIA-------IECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFS 72 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHH-------HHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHH-------HHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3555666666665443 346554 55555555443 3444444433321 1243433445666666
Q ss_pred HHHhcCcccccchHhHHHHHhhhhcCC---cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCC--cHHHHH
Q 005975 223 FVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WEATRI 297 (666)
Q Consensus 223 ~i~l~~~~l~pylp~lL~~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~--~~~tR~ 297 (666)
+++-+.-.+-||+..++|.++.|+... ...+|+.|++....+.+-.++.-..+ -..+...+.+.+.|+ ...+..
T Consensus 73 Ll~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 73 LIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp HHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHHHH
Confidence 777677788999999999999998643 23799999999888877665422222 368888888888764 466788
Q ss_pred HHHHHHHHHHhhC
Q 005975 298 EALHWISTLLNRH 310 (666)
Q Consensus 298 aaL~WL~~L~~~~ 310 (666)
.|+.-+..+-..+
T Consensus 152 GAi~GL~~lG~~~ 164 (196)
T 4atg_A 152 GALYCLSILSKNV 164 (196)
T ss_dssp HHHHHHHHHCHHH
T ss_pred HHHHHHHHhHHHH
Confidence 8777666665543
No 116
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.48 E-value=1.4 Score=50.28 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC--cHHHHHHHHHHHHHHHHhhCC
Q 005975 194 YGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--EEKIRVVARETNEELRAIKAD 270 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~-d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~--~~eIR~~A~~~n~~L~~~i~~ 270 (666)
-.+-|+.|.+++.+. -.+=|+.|+.-++.|.+-.+..+. ..-++.++..|... |.|+-+.+- +.|......
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~L---etL~~l~~~ 92 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYAL---DTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHH---HHHHHHHCC
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHH---HHHHHHhCC
Confidence 345566666666543 456788899988887665554433 33456666666532 444444443 444332221
Q ss_pred CCC---------C-CCh-----------HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH---HHHHHHH
Q 005975 271 PAD---------G-FDV-----------GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN---DIFDTLL 326 (666)
Q Consensus 271 ~~~---------~-~dl-----------~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~---~l~p~LL 326 (666)
..+ . -++ .+-++.|...+.+.+..+|..+++-|..+....|+.+...+= .-+|.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 100 0 111 244667888899999999999999999999999987766543 6889999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccchHHH------HHHHHHhhcccc
Q 005975 327 KALSDPSDEVVLLVLEVHACIAKDLQHFRQ------LVVFLVHNFRVD 368 (666)
Q Consensus 327 ~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~------fm~~LL~lf~~d 368 (666)
..|+|+.+.||..++-+|..++.+.....+ -+..|.+.+..+
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 999999999999999999999965544332 344455555444
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.31 E-value=1.4 Score=42.87 Aligned_cols=141 Identities=14% Similarity=0.233 Sum_probs=96.7
Q ss_pred chhhhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccccHhhhHHHHHHhhc------CCCHHHHHHHHHHH
Q 005975 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN------VLNPYVRQFLVGWI 138 (666)
Q Consensus 65 ~~il~~f~eIfd~L~kl~~D~d~~Vr~gA~~LdrLlKDIv~e~~~f~L~~fIPlL~eri~------~~np~vR~~alswL 138 (666)
.|...||.+|-+++.. ..|++| |..+-. +. .+..++|.+...+. ..|...=..++.-+
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~a--L~sL~~----D~---gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIA--IECLEK----ES---GLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHH--HHHHHH----CS---SCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHH--HHHHhc----CC---ChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4566788888888754 346555 444332 33 35555665555553 24666667778888
Q ss_pred HHhhcCCchhhhhchHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCC--HHHH
Q 005975 139 TVLDSVPDIDMLGFLPDFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTR 213 (666)
Q Consensus 139 ~~L~svp~~~Li~yLp~fL~gLf~lLsD---~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d--~~ir 213 (666)
..+..-|...+-+|+..+++.+..++-. ....+|..|.+.|+.+++.......-=-+.++..+.+.+.+++ ....
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~ 150 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQ 150 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHH
Confidence 8899999999999999999999877622 1227999999999999998865322224778889998887764 3445
Q ss_pred HHHHHHHH
Q 005975 214 LTAITWIN 221 (666)
Q Consensus 214 l~Al~WL~ 221 (666)
.-|+.-+.
T Consensus 151 YGAi~GL~ 158 (196)
T 4atg_A 151 YGALYCLS 158 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 118
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=92.40 E-value=21 Score=41.88 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=78.8
Q ss_pred hHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHhhcC---CchhHHHHH-HHHH
Q 005975 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSAD---SDANVQSAA-HLLD 97 (666)
Q Consensus 25 ~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r---~~il~~f~eIfd~L~kl~~D---~d~~Vr~gA-~~Ld 97 (666)
....+.+.+.|.++.++..++..+..+++.++.+++-... +-++ +.+++-+...++. .+++--.+| ..|.
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl---P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY---DKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH---HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh---HHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 4477889999999999999999999999999999987554 4444 3445544444444 455544445 6777
Q ss_pred HHHHHhhcccc-cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005975 98 RLVKDIVTESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (666)
Q Consensus 98 rLlKDIv~e~~-~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~ 142 (666)
.++.-++.... ...+..++..+...|...|+.--...+..+..+.
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 77777776432 1235555566666677788876666666666553
No 119
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=91.59 E-value=25 Score=41.16 Aligned_cols=199 Identities=11% Similarity=0.130 Sum_probs=119.2
Q ss_pred hhhhHHHHHhhcCCCCHHHHH--HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh--cCCchhHHHHHHHHHHHHHHhhc
Q 005975 30 LQQIVPPVLNSFSDQDSRVRY--YACEALYNIAKVVRGDFIIFFNQIFDALCKLS--ADSDANVQSAAHLLDRLVKDIVT 105 (666)
Q Consensus 30 l~~Il~pVL~~~~D~d~rVR~--~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~--~D~d~~Vr~gA~~LdrLlKDIv~ 105 (666)
++.|...+++.|++.-.-.++ .|--.+|-+.....+.++.++..++.++-..+ ++.-.-.+.-+..+..+++..+.
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 888999999988732111122 11111111111012356778888888887766 33333345555555555554333
Q ss_pred ----c-----c--------c----cccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhc
Q 005975 106 ----E-----S--------D----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML 164 (666)
Q Consensus 106 ----e-----~--------~----~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lL 164 (666)
| . + ..-++.+.|.+...+++.++.+...+.+++..|.-+.+.+--..+|.+++-+...|
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sL 389 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTL 389 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHh
Confidence 2 0 0 23378889999999999999999999999999998877655667888888888777
Q ss_pred CC---CChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHH
Q 005975 165 SD---SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 241 (666)
Q Consensus 165 sD---~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~ 241 (666)
.. ..+.=-.+|.++|..+..-+... ..+.+|+..+|..
T Consensus 390 e~~~l~e~Hrl~~aL~~l~~~~r~lv~~---------------------------------------~~yr~hl~~lL~l 430 (799)
T 1vsy_4 390 ADQFINSRHRIISSLKQFTRVIRFIVMD---------------------------------------KLYRVHITNVLSM 430 (799)
T ss_dssp TTTTTTCHHHHHHHHHHHHTTHHHHTTS---------------------------------------TTGGGHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhcC---------------------------------------cccHHHHHHHHHH
Confidence 65 33332233444444444433221 1245677777777
Q ss_pred HhhhhcCCcHHHHHHHHHHHHHHHHh
Q 005975 242 ILPCISDKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 242 LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (666)
++|.+.-.|++--..+-+....+...
T Consensus 431 ~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 431 LVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HhccCCcccHHHHHHHHHHHHHHHHh
Confidence 77777766655333333444444333
No 120
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=90.99 E-value=17 Score=37.96 Aligned_cols=196 Identities=11% Similarity=0.124 Sum_probs=109.7
Q ss_pred ccchHhHHHHHhhhhcCCcH-----HHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHH----HHhcC---CCcHHHHHHH
Q 005975 232 VPYYADILGAILPCISDKEE-----KIRVVARETNEELRAIKADPADGFDVGPILSIA----TRQLS---SEWEATRIEA 299 (666)
Q Consensus 232 ~pylp~lL~~LL~~Lsd~~~-----eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L----~~~L~---~~~~~tR~aa 299 (666)
-.++|.++.+++.--....| |+=......-..+-+.+.+ .+..+++.+ ..... .+-++.|+.=
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~-----~vp~Il~~VFe~TL~MI~~df~eyPehR~~F 142 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA-----EIPQIFDAVFECTLNMINKDFEEYPEHRTNF 142 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG-----GHHHHHHHHHHHHHHHHSSTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHhcccccChHHHHHH
Confidence 44577777777664444444 4433333333333322221 123333322 22222 3568899999
Q ss_pred HHHHHHHHhhChHHHhhhhH----HHHHHHHHhcCCCCHHHHHHHHHHHH----HHhhc----cc----hHHHHHHHHHh
Q 005975 300 LHWISTLLNRHRTEVLHFLN----DIFDTLLKALSDPSDEVVLLVLEVHA----CIAKD----LQ----HFRQLVVFLVH 363 (666)
Q Consensus 300 L~WL~~L~~~~p~~i~~~l~----~l~p~LL~~LsD~s~eVv~~~l~lLa----~Is~~----~~----~F~~fm~~LL~ 363 (666)
..+|.++..+|...+...-+ .++..++....++..+|-...+.++. .++.+ .. ||-.+++.++.
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~ 222 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFS 222 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876544 45666667789999999888887654 44321 23 33444444444
Q ss_pred hc-cccchhhhhHHHHHHHHHhccC----------------ChHHHHHHHHHhhccc---CChHHHHHHHHHHHHHhccc
Q 005975 364 NF-RVDNSLLEKRGALIIRRLCVLL----------------DAERVYRELSTILEGE---ADLDFACTMVQALNLILLTS 423 (666)
Q Consensus 364 lf-~~d~~lLe~Rg~~IIR~Lc~~L----------------~~E~Iy~~la~iL~~~---~dl~F~~~mVq~Ln~iLLTs 423 (666)
-+ +++++--=+.-..|+++|.... |.+-|...+++.|.+. -...=+..+|+-|-. ..
T Consensus 223 VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~---~~ 299 (321)
T 1w9c_A 223 VVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS---LN 299 (321)
T ss_dssp HHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH---TT
T ss_pred HHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cc
Confidence 33 3333322222356788877322 3456666666666542 122223333443332 24
Q ss_pred hhHHHHHHHHHh
Q 005975 424 SELSELRDLLKK 435 (666)
Q Consensus 424 ~El~~lR~~L~~ 435 (666)
.+..+||+.||+
T Consensus 300 ~d~~~Fk~~lrD 311 (321)
T 1w9c_A 300 QDIPAFKEHLRD 311 (321)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 577788888887
No 121
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.88 E-value=18 Score=38.04 Aligned_cols=227 Identities=13% Similarity=0.160 Sum_probs=136.9
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC------CchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV------PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~sv------p~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI 186 (666)
..++..|...+..-+-..|+-+......+..- |..+.+..=|++++.|++--.+++- --. .|..+++.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di--Al~----~G~mLRec 150 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI--ALN----CGIMLREC 150 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT--HHH----HHHHHHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh--HhH----HHHHHHHH
Confidence 45678888888888999999888866665432 1222333347888877776665542 222 23444444
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHH
Q 005975 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (666)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (666)
-+ ++.+..+++.. +.+. .++..+..+..||-.-|-.+..+++
T Consensus 151 ir-----~e~la~~iL~~------------------------~~f~--------~fF~yv~~~~FdiasDAf~TfkelL- 192 (341)
T 1upk_A 151 IR-----HEPLAKIILWS------------------------EQFY--------DFFRYVEMSTFDIASDAFATFKDLL- 192 (341)
T ss_dssp HT-----SHHHHHHHHHS------------------------GGGG--------HHHHHTTCSSHHHHHHHHHHHHHHH-
T ss_pred HH-----hHHHHHHHhcc------------------------HHHH--------HHHHHhcCCCchHHHHHHHHHHHHH-
Confidence 21 23333333321 1111 1122344455554433333333332
Q ss_pred hhCCCCC------CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh--ChHHHhhhhH--HHHHHHHHhcCCCCHHH
Q 005975 267 IKADPAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR--HRTEVLHFLN--DIFDTLLKALSDPSDEV 336 (666)
Q Consensus 267 ~i~~~~~------~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~--~p~~i~~~l~--~l~p~LL~~LsD~s~eV 336 (666)
..... .-+|+.+.......+.+++-.||..++..|+.+..- .-.-|..|.+ .-+..++..|.|++.-|
T Consensus 193 --t~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~I 270 (341)
T 1upk_A 193 --TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNI 270 (341)
T ss_dssp --HSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHH
T ss_pred --hccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhch
Confidence 21100 135788888888889999999999999999988766 4556677765 46788899999999999
Q ss_pred HHHHHHHHHHHhhccch-------H---HHHHHHHHhhcc----ccchhhhhHHHHHHHHHhcc
Q 005975 337 VLLVLEVHACIAKDLQH-------F---RQLVVFLVHNFR----VDNSLLEKRGALIIRRLCVL 386 (666)
Q Consensus 337 v~~~l~lLa~Is~~~~~-------F---~~fm~~LL~lf~----~d~~lLe~Rg~~IIR~Lc~~ 386 (666)
.-.|.-+..-+..|+.- + +.-+...+.-|. +|....++| +++|+++-.+
T Consensus 271 q~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK-~~lI~~I~~L 333 (341)
T 1upk_A 271 QFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEK-TYLVKQIRDL 333 (341)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHH-HHHHHHHHTC
T ss_pred hhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHH-HHHHHHHHhC
Confidence 99999988888754211 0 112222233343 345677777 8888888665
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.85 E-value=28 Score=37.28 Aligned_cols=177 Identities=15% Similarity=0.220 Sum_probs=107.4
Q ss_pred HhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc
Q 005975 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (666)
Q Consensus 28 ~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e 106 (666)
..++.+++.++.--.|++..||+...+-++.+++. -..+...+++.|..++.|.++.|.+.+ .+...
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~ts-------- 126 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQ-------- 126 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--------
Confidence 46778888888888899999999998887777652 123357888888888888888877666 33222
Q ss_pred cccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-----hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005975 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-----IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (666)
Q Consensus 107 ~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~-----~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~ 181 (666)
+-|.+.+ |+. ..++ .+.-..+-.+=+.++.+....+..||..|.+.+..
T Consensus 127 --------lYpl~f~---------------~i~---~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 127 --------LYKVALQ---------------WMV---KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp --------HHHHHHH---------------HHH---HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred --------HHHHHHH---------------HHh---cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 1233222 221 1121 23444555566666777666678899998888887
Q ss_pred HHHHhhcC-----------------------CCCCH-------HHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCc
Q 005975 182 FLQEIKNS-----------------------PSVDY-------GRMAEILVQRAASPD--EFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 182 fL~eI~~~-----------------------~~~d~-------~~iI~iLl~~~~s~d--~~irl~Al~WL~~~i~l~~~ 229 (666)
++...-.. +-.+. ..+...|+..++++. +..-..++.-+..++..-|
T Consensus 181 VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP- 259 (386)
T 3o2t_A 181 LIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP- 259 (386)
T ss_dssp HHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG-
T ss_pred HHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH-
Confidence 77433211 00111 346777777777532 3222334444444444433
Q ss_pred ccccchHhHHHHHhhhh
Q 005975 230 QLVPYYADILGAILPCI 246 (666)
Q Consensus 230 ~l~pylp~lL~~LL~~L 246 (666)
.|.++|+++++..-
T Consensus 260 ---~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 260 ---MFMSEVIQAYETLH 273 (386)
T ss_dssp ---GGHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhc
Confidence 35788888887643
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.62 E-value=3.4 Score=37.80 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=59.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
+..|..|+...||.+-..++.-+..+.+-+|..+...+ -+|++.|.+++..++++||+.+.+++...-..++..+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566788889999999999988888888877665444 6677777777777899999999999999888887643
No 124
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=86.95 E-value=3.3 Score=43.30 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=77.7
Q ss_pred HhhhHHHHHHhh---c-CCCHHHHH-HHHHHHHHhhcCCchhhhhchHHHHHHHH----HhcCC---CChhHHHHHHHHH
Q 005975 112 IEEFIPLLRERM---N-VLNPYVRQ-FLVGWITVLDSVPDIDMLGFLPDFLDGLF----NMLSD---SSHEIRQQADSAL 179 (666)
Q Consensus 112 L~~fIPlL~eri---~-~~np~vR~-~alswL~~L~svp~~~Li~yLp~fL~gLf----~lLsD---~~~eVR~~A~~~L 179 (666)
.+.|+|+|.+-+ | ...|.+|. -.++.+..+.+-.+..+.+++|.+++.+| .|.++ ..||.|..=-+.|
T Consensus 67 ~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL 146 (321)
T 1w9c_A 67 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLL 146 (321)
T ss_dssp HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 355666666544 1 23355553 24455555655556778899999999998 67764 6799998755555
Q ss_pred HHHHHHhhc----CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 005975 180 WEFLQEIKN----SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (666)
Q Consensus 180 ~~fL~eI~~----~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~ 225 (666)
..+....-. -|.-.+..+|+.++..+++++..+..+++..+.++++
T Consensus 147 ~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 147 QAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 554432211 1223578899999999999999999999888876665
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.92 E-value=3.5 Score=38.81 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=58.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCC
Q 005975 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 115 fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
-+-.|..|+...||.+...++.-+..+.+-.+..+...+ -+|++.|.+++.. +++.||+.+.+++..--..++..+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 344567788889999999999999988888877665433 3477777777765 678999999888888888876543
No 126
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.65 E-value=19 Score=38.39 Aligned_cols=175 Identities=10% Similarity=0.152 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccc-hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHH
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~~~-~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~l 396 (666)
..+..+..+|.-+.+.++..++++|+-+|- ++. .++.++..+-..-.. .++ .-|..+
T Consensus 100 ~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~-----~e~---------------~RF~~l 159 (386)
T 2bnx_A 100 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM-----DEV---------------ERFQPL 159 (386)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH-----HTS---------------CTTHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh-----Cch---------------hhHHHH
Confidence 456788899988889999999999999994 222 378888877653110 111 113334
Q ss_pred HHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHH---
Q 005975 397 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHA--- 473 (666)
Q Consensus 397 a~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~a--- 473 (666)
-+.+....+.++.-..++..|.++-+.+++ ++|..||+-+..-.=..++..| +.+ .|+- |=-=.+.|+..
T Consensus 160 v~~l~~~~~~e~~~a~m~lIN~lv~~~~dl-~~R~~LR~Ef~~~GL~~il~~L-r~~-~~~~----L~~Qi~~fe~~~~e 232 (386)
T 2bnx_A 160 LDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRSELMRLGLHQVLQEL-REI-ENED----MKVQLCVFDEQGDE 232 (386)
T ss_dssp HHHTSTTSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHTTHHHHHHHH-TTC-CCHH----HHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCChHHHHHHH-hcc-CChh----HHHHHHHHHHHHHH
Confidence 444455688999999999999888877664 5677776422112222333333 211 1221 11112233322
Q ss_pred --HHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhc
Q 005975 474 --SAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 532 (666)
Q Consensus 474 --~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Lle~~~~p~L~k~LygllmlL 532 (666)
-.+.+.|.+++++.+... -+|..+.-++=+-+.+||+.-.|..||++-
T Consensus 233 D~~el~~r~~~i~~d~~d~~-----------~~~~~l~~~~~~t~~~~~flSiLQhLLli~ 282 (386)
T 2bnx_A 233 DFFDLKGRLDDIRMEMDDFG-----------EVFQIILNTVKDSKAEPHFLSILQHLLLVR 282 (386)
T ss_dssp HHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHTTSTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhhhcCCCCCCCHH-----------HHHHHHHHHHcCCCchhHHHHHHHHHHhCC
Confidence 123333333322222211 135555555556667899999999998864
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=85.52 E-value=7.8 Score=41.41 Aligned_cols=174 Identities=10% Similarity=0.116 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc--c-hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHH
Q 005975 321 IFDTLLKALSDPSDEVVLLVLEVHACIAKDL--Q-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELS 397 (666)
Q Consensus 321 l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~--~-~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la 397 (666)
.+..|..+|..+.+.++..++++|+.+|.-. . -++.++..+-. +.. .. -..| |..+-
T Consensus 163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~-~~~-~~-e~~R-----------------F~~lv 222 (383)
T 3eg5_B 163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE-RAE-MD-EVER-----------------FQPLL 222 (383)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH-HHH-HH-TSCT-----------------THHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH-HHH-hC-CCCc-----------------HHHHH
Confidence 4667888899899999999999999999422 3 48888888765 332 11 0122 44445
Q ss_pred HhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHH-----
Q 005975 398 TILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHH----- 472 (666)
Q Consensus 398 ~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lsLcll~~~Y~~----- 472 (666)
+.|..+.+.++....++..|.++-+.+++ ++|..||+-+..-.-..++..| +. +.|+-=. -=.+.||.
T Consensus 223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ef~~~Gl~~il~~l-r~-~~~~~L~----~Qi~~fe~~~~eD 295 (383)
T 3eg5_B 223 DGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRSELMRLGLHQVLQEL-RE-IENEDMK----VQLCVFDEQGDED 295 (383)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHTTHHHHHHHH-TT-SCCHHHH----HHHHHHHHHHHHH
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCChHHHHHHH-hc-CCChhHH----HHHHHHHHHHHHh
Confidence 55666688999989999999888776554 4566666422112222333332 11 1122111 11122222
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhc
Q 005975 473 ASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 532 (666)
Q Consensus 473 a~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Lle~~~~p~L~k~LygllmlL 532 (666)
-..+...|.++.++.+. .+ .+|..|+-++=.-..+||+.-.|..||++-
T Consensus 296 ~~el~~r~~~~~~d~~d------~~-----~~~~~l~~~~~~t~a~~~flSiLQhLlli~ 344 (383)
T 3eg5_B 296 FFDLKGRLDDIRMEMDD------FG-----EVFQIILNTVKDSKAEPHFLSILQHLLLVR 344 (383)
T ss_dssp HHHHHHHHHHHHHHCCS------HH-----HHHHHHHHHTTTSTTHHHHHHHHHHTTCSC
T ss_pred HHHHHhhccccCcCcCC------HH-----HHHHHHHHHhcCCcchHHHHHHHHHHHhcc
Confidence 12334444322111111 11 135556666666677899999999998874
No 128
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=83.33 E-value=31 Score=37.13 Aligned_cols=231 Identities=17% Similarity=0.243 Sum_probs=123.6
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005975 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (666)
Q Consensus 114 ~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d 193 (666)
.|+-.|.+.+.+.||+=|.++.+-+..+-. .|++ --+-+|++..+.+-+|+-+.. .+..
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~-----------kf~~--------~R~~Irk~innif~~fiye~e--~~~G 187 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYG-----------KFLG--------LRAYIRKQINNIFYRFIYETE--HHNG 187 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-----------HCHH--------HHHHHHHHHHHHHHHHHHTTC--CCTT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHH-----------hhhh--------hHHHHHHHHHHHHHHHhcCcc--cCCC
Confidence 478889999999999999988776664321 1111 113466666666666665532 2344
Q ss_pred HHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhc-CCc---HHHHHH--------
Q 005975 194 YGRMAEILVQRA---ASP-DEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCIS-DKE---EKIRVV-------- 256 (666)
Q Consensus 194 ~~~iI~iLl~~~---~s~-d~~irl~Al~WL~~~i~l~-~~~l~pylp~lL~~LL~~Ls-d~~---~eIR~~-------- 256 (666)
++++++++-.-+ .-| .++.+.+ +.+.++-+- +..+.-|-+++.-.+...+. |+. +-++..
T Consensus 188 IaeLLeilgsIinGfa~PLkeehk~f---l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn 264 (403)
T 3fga_B 188 IAELLEILGSIINGFALPLKEEHKIF---LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH 264 (403)
T ss_dssp HHHHHHHHHHHHHHCCSSCCHHHHHH---HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHcccCCCchHHHHHH---HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC
Confidence 566666554443 333 2344332 334344432 33445555666555555443 211 112211
Q ss_pred ------HHHHHHHHHHhhCCCCCCCCh----HhHHHHHHHhcCCCcHHHHHHHHH-H----HHHHHhhChHHHhhhhHHH
Q 005975 257 ------ARETNEELRAIKADPADGFDV----GPILSIATRQLSSEWEATRIEALH-W----ISTLLNRHRTEVLHFLNDI 321 (666)
Q Consensus 257 ------A~~~n~~L~~~i~~~~~~~dl----~~il~~L~~~L~~~~~~tR~aaL~-W----L~~L~~~~p~~i~~~l~~l 321 (666)
.-.-.+++++.+ +.-++ ..+...+...+.|++-.+-++|+. | +..+.....+.+ ++-+
T Consensus 265 s~KevlFL~Ele~iLe~~----~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~I---lPii 337 (403)
T 3fga_B 265 SPKEVMFLNELEEILDVI----EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI---LPIM 337 (403)
T ss_dssp HHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHH---HHHH
T ss_pred cHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHH---HHHH
Confidence 111111222211 11123 345556777788999999999984 3 233444443333 3345
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhccccchhhhhH
Q 005975 322 FDTLLKALSD-PSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKR 375 (666)
Q Consensus 322 ~p~LL~~LsD-~s~eVv~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (666)
+|.|.+.... =++.|+..+..++.-+.+ |.+-|+......-..=...+...++|
T Consensus 338 ~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r 393 (403)
T 3fga_B 338 FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKER 393 (403)
T ss_dssp HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664433 378999999999999985 55666665544433222233333444
No 129
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=82.16 E-value=49 Score=34.04 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhh-----hhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhcc--
Q 005975 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-----FLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKDL-- 351 (666)
Q Consensus 280 il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~-----~l~~l~p~LL~~LsD~-s~eVv~~~l~lLa~Is~~~-- 351 (666)
.++.+.+.+ .+..+.|..+++-+..++. .|..-.- .-+.++..+++.++++ .+..+..++++++..-++.
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 445566655 6777788888887776554 2221111 1234555677777643 4556778888888766432
Q ss_pred -----chHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC-------hHHHHHHHHHhhcccCChHHHHHHHHHHHHH
Q 005975 352 -----QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD-------AERVYRELSTILEGEADLDFACTMVQALNLI 419 (666)
Q Consensus 352 -----~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~-------~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~i 419 (666)
.+++.++..+...+...++.++..++-.+-++...+. .+.+...+..++++++|.+-+-++...|-++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 2456677777776666788888888888888888652 2456666777787888989888999999999
Q ss_pred hccchhHHHHHHHH
Q 005975 420 LLTSSELSELRDLL 433 (666)
Q Consensus 420 LLTs~El~~lR~~L 433 (666)
+-.++|+.++-+.+
T Consensus 262 ~~~~~~~~~lak~l 275 (304)
T 3ebb_A 262 ISDDSNAVQLAKSL 275 (304)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HhCChhHHHHHHHc
Confidence 98888877766554
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.26 E-value=10 Score=35.04 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=58.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHhh
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD------~~~eVR~~A~~~L~~fL~eI~ 187 (666)
+-.|..|+...||.+-..++.-+..+.+-.|..+...+ -+|++.|.+++++ ++++||..+..++..--..++
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 34456788889999999999999999888886664433 5888889988875 478999999888888887775
Q ss_pred c
Q 005975 188 N 188 (666)
Q Consensus 188 ~ 188 (666)
.
T Consensus 120 ~ 120 (148)
T 1mhq_A 120 E 120 (148)
T ss_dssp T
T ss_pred C
Confidence 4
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=80.17 E-value=62 Score=33.94 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=131.0
Q ss_pred hhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcch---hhhh---HHHHHHHHHHhhcCCchhHHHHHHHHHH----
Q 005975 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD---FIIF---FNQIFDALCKLSADSDANVQSAAHLLDR---- 98 (666)
Q Consensus 29 yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~---il~~---f~eIfd~L~kl~~D~d~~Vr~gA~~Ldr---- 98 (666)
|-..++..++.++..=+...|+-++....++.+.-.+. ...| -+++++.|+++..++|...--|+.+-+.
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhH
Confidence 66678889999999999999999888877776532221 1123 3799999999999998866666632111
Q ss_pred -HHHHhhcccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---h-hhhchHHHHHHHHHhcCCCChhHHH
Q 005975 99 -LVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI---D-MLGFLPDFLDGLFNMLSDSSHEIRQ 173 (666)
Q Consensus 99 -LlKDIv~e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~---~-Li~yLp~fL~gLf~lLsD~~~eVR~ 173 (666)
+++-+. +++.| -.+.+.+..++=++-.-+.+-..-+...-+. + +..+.+.|++..-+++..+|--.|+
T Consensus 155 ~la~~iL-~~~~f------~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 155 PLAKIIL-WSEQF------YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHHHHH-HSGGG------GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHh-ccHHH------HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 222111 22211 2333555556656666666655544333221 2 3457788888888999999999999
Q ss_pred HHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005975 174 QADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (666)
Q Consensus 174 ~A~~~L~~fL~eI~~~~----~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~ 228 (666)
.+-++|++++-+=.+.. .++=++-+.+++..++++..-||..|.+-...|+.-+.
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999999996432210 12335667788889999999999999999999987543
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=79.78 E-value=17 Score=35.76 Aligned_cols=193 Identities=11% Similarity=0.027 Sum_probs=105.2
Q ss_pred HhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005975 140 VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITW 219 (666)
Q Consensus 140 ~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~W 219 (666)
.|....+.+-..++..++++-+.+++=..|++|+.|-. +.++.+.....++..++..|. +++..+.|..|+.+
T Consensus 12 ~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~----~~k~~~~~~~~~~~~~~~~L~---~~~~~E~r~~ai~~ 84 (232)
T 3jxy_A 12 HFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKD----IIQIHTLPDQKDFQIIIRELW---DLPEREFQAAALDI 84 (232)
T ss_dssp HHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHH----HHHHHCCCCGGGHHHHHHHHH---TSSBHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHH----HHHhccccchhhHHHHHHHHh---cCcHHHHHHHHHHH
Confidence 34445555555556666666667888889999998743 333332212234444444444 55677899999999
Q ss_pred HHHHHHhcCcccccchHhHHHHHhhhhcCCcHHHH-HHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHH
Q 005975 220 INEFVKLGGDQLVPYYADILGAILPCISDKEEKIR-VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIE 298 (666)
Q Consensus 220 L~~~i~l~~~~l~pylp~lL~~LL~~Lsd~~~eIR-~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~a 298 (666)
+....+-...+-++++.. .++. .++=++- ..|..+.+.+..-- -..+.+.+.+-..|++.-+|-+
T Consensus 85 l~~~~k~~~~~~l~~~~~----~l~~--~~nWd~~D~~a~~~~g~~~~~~--------p~~~~~~l~~W~~s~~~w~rR~ 150 (232)
T 3jxy_A 85 MQKYKKHINETHIPFLEE----LIVT--KSWWDSVDSIVPTFLGDIFLKH--------PELISAYIPKWIASDNIWLQRA 150 (232)
T ss_dssp HHHTGGGCCGGGHHHHHH----HHTS--SCCHHHHHHHTTTHHHHHHHHC--------GGGGGGTHHHHHHSSCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH----HHcc--CCChHHHHHhhHHHHHHHHHHC--------HHHHHHHHHHHhcCCchHHHHH
Confidence 874332222222222222 2221 2222222 22223323322210 1235566777777778666666
Q ss_pred HHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchHHHHHH
Q 005975 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-LQHFRQLVV 359 (666)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~-~~~F~~fm~ 359 (666)
|+.-+ +... .....+.+++.+...+.|++.-|....-|.|..++.. .+.-..|+.
T Consensus 151 ai~~~--l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 151 AILFQ--LKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHTT--TTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHH--HHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 65432 1111 1223445677777888899999999999999999953 333334443
No 133
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=77.76 E-value=11 Score=34.96 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=56.4
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHH-HHHhcC---CCChhHHHHHHHHHHHHHHHhhc
Q 005975 116 IPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDG-LFNMLS---DSSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 116 IPlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~g-Lf~lLs---D~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
+-.|..|+. ..||.+...++.-+..+.+-.|..+...+ -+|++. |.++++ +++..||+.+.+++..--..++.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 444667786 48999999999999998888877665433 347777 677774 45679999998988888888865
Q ss_pred CC
Q 005975 189 SP 190 (666)
Q Consensus 189 ~~ 190 (666)
.+
T Consensus 135 ~p 136 (157)
T 1elk_A 135 SP 136 (157)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 134
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=76.61 E-value=1.4e+02 Score=36.01 Aligned_cols=187 Identities=13% Similarity=0.044 Sum_probs=123.7
Q ss_pred hHhHHHHHhhhhcC----CcHHHHHHHHHHHHHHHHh-hCCCCC-C-CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005975 235 YADILGAILPCISD----KEEKIRVVARETNEELRAI-KADPAD-G-FDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (666)
Q Consensus 235 lp~lL~~LL~~Lsd----~~~eIR~~A~~~n~~L~~~-i~~~~~-~-~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~ 307 (666)
-++++..+...+.. +++.+|..|.-+.+++..- +.+... . -.+..+.+.+.+.+...+.+.++.+|..|+.+-
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 45667766666654 4578899888888777643 332211 1 115677777777777777778888888888775
Q ss_pred hhChHHHhhhhHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHH
Q 005975 308 NRHRTEVLHFLNDIFDTLLKALSD-------PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALII 380 (666)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~LsD-------~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~II 380 (666)
. +..++.|.+.+.. ...+|+..+++.|.++... +=+.+-.-+++.|.+...--|-|..-..
T Consensus 469 ~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 469 Q----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp C----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred C----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 5 2345566666532 2357888999999999842 3334555677777655444566644332
Q ss_pred HHHhccCChHHHHHHHHHhhcccCChHHHHHHHHHHHHHhcc-chhHHHHHHHHH
Q 005975 381 RRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLT-SSELSELRDLLK 434 (666)
Q Consensus 381 R~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLT-s~El~~lR~~L~ 434 (666)
.|-..-++......++..+..|.+....+-+-..|..+.=+ .|+..+++...+
T Consensus 537 -~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~ 590 (1056)
T 1lsh_A 537 -VFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACS 590 (1056)
T ss_dssp -HHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHH
T ss_pred -HHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 23333466789999999999999988888888887776654 477777765433
No 135
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.69 E-value=1.5e+02 Score=35.81 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=105.4
Q ss_pred HHHHHHHhcCC----CChhHHHHHHHHHHHHHHHhhcC-CC---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005975 156 FLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNS-PS---VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (666)
Q Consensus 156 fL~gLf~lLsD----~~~eVR~~A~~~L~~fL~eI~~~-~~---~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~ 227 (666)
.++.++.++.+ .++.+|+.|.-+++.++...-.. +. -.++.+.+.+.+.+...|++-+..++..|+++-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g--- 468 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--- 468 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC---
Confidence 34444555544 46789999989999988766432 11 126778888888888888777777777666432
Q ss_pred CcccccchHhHHHHHhhhhcC------C-cHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhc--CCCcHHHHHH
Q 005975 228 GDQLVPYYADILGAILPCISD------K-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRIE 298 (666)
Q Consensus 228 ~~~l~pylp~lL~~LL~~Lsd------~-~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L--~~~~~~tR~a 298 (666)
.|..++.+.+++.. + ...+|..|..+...+. . .+-..+-+++.+.+ ...+.+.|++
T Consensus 469 -------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~---~-----~~p~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 469 -------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---K-----RDPRKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp -------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---G-----TCHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred -------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh---h-----hchHHHHHHHHHHhcCCCCChHHHHH
Confidence 25677777777742 1 2467777766543221 1 11235667777777 4567889999
Q ss_pred HHHHHHHHHhhChHHHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhh
Q 005975 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L-sD~s~eVv~~~l~lLa~Is~ 349 (666)
|+.-| .+..|.. . ++..+...+ .|++.+|..-+...|..+++
T Consensus 534 A~~~L---m~t~P~~--~----~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 534 SCIVF---FESKPSV--A----LVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHH---HHTCCCH--H----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHH---HHHCcCH--H----HHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 87654 3444432 1 122233333 56889999988888888884
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.04 E-value=22 Score=32.78 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCC------CChhHHHHHHHHHHHHHH
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSD------SSHEIRQQADSALWEFLQ 184 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~--yLp~fL~gLf~lLsD------~~~eVR~~A~~~L~~fL~ 184 (666)
..-+..|..|+...||.+-..++.-+..+.+-.|..+.. -=-+|++.|.+++++ ++++||..+.+++..--.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 334556778888999999999999999888888766532 235678888888876 578999999898888888
Q ss_pred Hhhc
Q 005975 185 EIKN 188 (666)
Q Consensus 185 eI~~ 188 (666)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7754
No 137
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=74.64 E-value=17 Score=38.70 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCcccccchHhHHHHHhhhhc--------CCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHH
Q 005975 215 TAITWINEFVKLGGDQLVPYYADILGAILPCIS--------DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATR 286 (666)
Q Consensus 215 ~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Ls--------d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~ 286 (666)
.-+.|+.+|+ ..|. ..++.. +..+. ..+.++...+-+|...+|....--..-+.-+..+..+..
T Consensus 98 ~~~sWV~~F~-~~Gl------~~Ll~i-L~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~ 169 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGL------ASLLDI-LKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVR 169 (383)
T ss_dssp SCHHHHHHHH-HHHH------HHHHHH-HHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHH
T ss_pred CccHHHHHHH-HccH------HHHHHH-HHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHH
Confidence 3478999997 3331 222222 22221 123355555666666554221000000112456788888
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhCh-H----HHhhhhHHH--------HHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 005975 287 QLSSEWEATRIEALHWISTLLNRHR-T----EVLHFLNDI--------FDTLLKALSDP-SDEVVLLVLEVHACIA 348 (666)
Q Consensus 287 ~L~~~~~~tR~aaL~WL~~L~~~~p-~----~i~~~l~~l--------~p~LL~~LsD~-s~eVv~~~l~lLa~Is 348 (666)
.+.+.+..+|..|++-|.++..... + .+..-++.. |..++..|... +-+....++.++..+.
T Consensus 170 ~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 170 AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 9999999999999999888776542 2 233333333 55666666652 3444444555555554
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.15 E-value=21 Score=34.86 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=56.7
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcCC
Q 005975 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSP 190 (666)
Q Consensus 114 ~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLs-D~~~eVR~~A~~~L~~fL~eI~~~~ 190 (666)
.-+-.|..||...||.+...++.-+..+.+-.|..+...+ -+|++.|.++++ +++.+||+.+.+.+..-...++..+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 3344566788889999999999999988877776553322 236666666665 4678999999888888888886544
Q ss_pred C
Q 005975 191 S 191 (666)
Q Consensus 191 ~ 191 (666)
.
T Consensus 122 ~ 122 (220)
T 1dvp_A 122 K 122 (220)
T ss_dssp S
T ss_pred H
Confidence 3
No 139
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=69.62 E-value=1.3e+02 Score=32.67 Aligned_cols=220 Identities=17% Similarity=0.240 Sum_probs=112.2
Q ss_pred HHhhhh-hHHHHHhhcCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHH
Q 005975 27 ETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (666)
Q Consensus 27 ~~yl~~-Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv---~r~~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlK 101 (666)
.+|++. .+-.++..|..+|+|-|.+....|..|-.. .|..+...++.+|- +.+-..+. -+|. ++| .++.
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~---~fi~e~e~--~nGIaeLL-eilg 229 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY---RFIYETEH--HNGIAELL-EILG 229 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHH---HHHHTCSC--CSCHHHHH-HHHH
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccCC--CCCHHHHH-HHHH
Confidence 445544 677889999999999999999888877432 22333333444433 33333322 1232 322 2222
Q ss_pred Hhhccc--------ccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCCChhHH
Q 005975 102 DIVTES--------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIR 172 (666)
Q Consensus 102 DIv~e~--------~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L~s-vp~~~Li~yLp~fL~gLf~lLsD~~~eVR 172 (666)
.|+..- ..|-...++|+..-.... .+ -+-+..++.++.+ -|. .-..++.||++.=-=+ ...
T Consensus 230 SIinGfa~PLKeehk~fl~~vLlPLhk~~~l~--~y-~~qL~ycv~qf~eKDp~-----L~~~vi~~LLk~WP~t--ns~ 299 (449)
T 2npp_B 230 SIINGFALPLKEEHKIFLLKVLLPLHKVKSLS--VY-HPQLAYCVVQFLEKDST-----LTEPVVMALLKYWPKT--HSP 299 (449)
T ss_dssp HHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG--GT-HHHHHHHHHHHHHHCGG-----GHHHHHHHHHHTCCSS--CHH
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHccchhH--Hh-HHHHHHHHHHHHhcCcH-----hHHHHHHHHHHhCCCC--Cch
Confidence 333221 123334445544321111 01 1123334443332 221 1234566666544111 222
Q ss_pred HHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHhcCCCCHHHHHHHHH-HHHHH-HHhcCcccccchHhHHHHHhhhh
Q 005975 173 QQADSALWEFLQEIKNSPSVDY----GRMAEILVQRAASPDEFTRLTAIT-WINEF-VKLGGDQLVPYYADILGAILPCI 246 (666)
Q Consensus 173 ~~A~~~L~~fL~eI~~~~~~d~----~~iI~iLl~~~~s~d~~irl~Al~-WL~~~-i~l~~~~l~pylp~lL~~LL~~L 246 (666)
+.+ -.|+++-+.+...+..++ ..+...+-.|+.+++-.|...|+. |-++. +.+ +..+-..++|.+++.+
T Consensus 300 Kev-lFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l----i~~n~~~IlPii~p~L 374 (449)
T 2npp_B 300 KEV-MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL----ISDNAAKILPIMFPSL 374 (449)
T ss_dssp HHH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH----HHTTHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH----HHhchhhhHHhhHHHH
Confidence 322 234443333322222234 345566677889999999999987 75552 222 1234455666666655
Q ss_pred c-----CCcHHHHHHHHHHHHHHHHh
Q 005975 247 S-----DKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 247 s-----d~~~eIR~~A~~~n~~L~~~ 267 (666)
- +=+..||..|..+...+++.
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3 22688999999998777643
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.84 E-value=21 Score=33.61 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHhh
Q 005975 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 116 IPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yL--p~fL~gLf~lLsD------~~~eVR~~A~~~L~~fL~eI~ 187 (666)
+-.|..|+...||.+...++.-+..+.+-++..+...+ -+|++.|.++++. .+.+||+.+.+++..--..++
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 44567788889999999999999988888776554322 4678888888863 468999999888888887775
Q ss_pred c
Q 005975 188 N 188 (666)
Q Consensus 188 ~ 188 (666)
.
T Consensus 132 ~ 132 (171)
T 1juq_A 132 E 132 (171)
T ss_dssp T
T ss_pred C
Confidence 4
No 141
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=66.10 E-value=73 Score=33.38 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=59.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHH----------hhc--
Q 005975 41 FSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD----------IVT-- 105 (666)
Q Consensus 41 ~~D~d~rVR~~A~eaL~nI~Kv~r~--~il~~f~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKD----------Iv~-- 105 (666)
..+.+.....||..|+.++-.-..| ++.. -++.+..+..+++..+.+|-..| ++|-.++.- -++
T Consensus 169 i~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v 247 (339)
T 3dad_A 169 GAAADHNYQSYILRALGQLMLFVDGMLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSV 247 (339)
T ss_dssp HTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHhccccccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHh
Confidence 3445788888888888887433233 2222 36778888888888888887777 554443321 110
Q ss_pred --ccccccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCch
Q 005975 106 --ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDI 147 (666)
Q Consensus 106 --e~~~f~L~~fIPlL~eri~~~np~vR~~alswL~~L-~svp~~ 147 (666)
+.+..+.+.++..|.+. ...|+.+..+++.-|+.+ ...|+.
T Consensus 248 ~~~~~~~p~~~Lv~~L~~~-~~~D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 248 ASTTGAPPWANLVSILEEK-NGADPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp HHHHCCCTTHHHHHHHTTT-TSCCHHHHHHHHHHHHHHHHHCSSH
T ss_pred hhccCCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 11112233333333221 257888888888777743 334443
No 142
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=66.07 E-value=21 Score=35.01 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch
Q 005975 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (666)
Q Consensus 156 fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pyl 235 (666)
.++-+..++.|.+.=+|+.|..++ + ......|...+.+++...+.+++..||...--|++++..-.++...+|+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~---l---~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ---L---KYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT---T---TCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---H---HHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 556677888899998888876543 1 1112357788888888999999999999766677776666666666665
Q ss_pred H
Q 005975 236 A 236 (666)
Q Consensus 236 p 236 (666)
.
T Consensus 206 ~ 206 (232)
T 3jxy_A 206 Q 206 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 143
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=64.01 E-value=13 Score=34.10 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC---c--------HHHHHHHHHHHH
Q 005975 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK---E--------EKIRVVARETNE 262 (666)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~pylp~lL~~LL~~Lsd~---~--------~eIR~~A~~~n~ 262 (666)
+..|+++|..++.++++.++..||.-|.-++.-+.+.|+..+-+=+..|-.+..+. + ..||..|.++..
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999998888777766666666555555432 1 368888877654
Q ss_pred HH
Q 005975 263 EL 264 (666)
Q Consensus 263 ~L 264 (666)
.+
T Consensus 127 ll 128 (140)
T 1vdy_A 127 AI 128 (140)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 144
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=63.80 E-value=1.4e+02 Score=31.81 Aligned_cols=184 Identities=17% Similarity=0.282 Sum_probs=107.0
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~ 192 (666)
..|+-.|.+.+.+.||+-|.++..-+..+ +.-..+--+-+|++..+.+-+|+.+. ..+.
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrI-------------------Y~Kf~~~R~~Irk~i~nif~~fiye~--e~~~ 231 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRI-------------------YGKFLGLRAYIRKQINNIFYRFIYET--EHHN 231 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHH-------------------HHHCGGGHHHHHHHHHHHHHHHHTSS--CCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHhhcc--CCCC
Confidence 35888889999999999998877655432 22222233456777767666666543 2244
Q ss_pred CHHHHHHHHHHhcCC---C-CHHHHHHHHHHHHHHHHhcC-cccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHh
Q 005975 193 DYGRMAEILVQRAAS---P-DEFTRLTAITWINEFVKLGG-DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (666)
Q Consensus 193 d~~~iI~iLl~~~~s---~-d~~irl~Al~WL~~~i~l~~-~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (666)
.++++++++-.-++. | .++.+.. +.+.++-+-. ..+.-|-+++.-.+...+. .++.+
T Consensus 232 GIaeLLeilgsIIngfa~PLKeehk~F---l~~vLlPLhk~~~l~~y~~qL~ycv~qf~e-KDp~L-------------- 293 (392)
T 2jak_A 232 GIAELLEILGSIINGFALPLKEEHKIF---LLKVLLPLHKVKSLSVYHPQLAYCVVQFLE-KDSTL-------------- 293 (392)
T ss_dssp CHHHHHHHHHHHHHTCCSSCCHHHHHH---HHHTTGGGGTSGGGGGTHHHHHHHHHHHHH-HCGGG--------------
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHH---HHHHhHhhccCCcHHHhHHHHHHHHHHHHh-cCchh--------------
Confidence 566777766443332 2 3444432 2333333322 2222233333222222211 01100
Q ss_pred hCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 268 KADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 268 i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~-p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
...++..+.++---.+..-.+.-|.-+..+.+.. ++++......+|..+-++++.+.-.|.+.|+.+|
T Consensus 294 ---------~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 294 ---------TEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp ---------HHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred ---------HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 1345555555443344445667777888888886 5567778899999999999999999999998765
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.80 E-value=58 Score=29.89 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=55.7
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD------~s~eVv~~~l~lLa~Is 348 (666)
...+..|.+.+.+.++.+.+.||.-+-.+...|+..+...+ .+.+..|.+.+++ ..++|+.+.++++..-+
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999998874322 1344556666665 46789999998877766
No 146
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=62.26 E-value=26 Score=34.41 Aligned_cols=95 Identities=9% Similarity=0.187 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccch-HHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHH
Q 005975 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQH-FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (666)
Q Consensus 320 ~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~--~~~~-F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~l 396 (666)
..+..+..+|..+.+.++..++++|+-+|- ++.- ++.++..+-.. ..- .+ ..-|..+
T Consensus 96 ~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~-~~~----~e---------------~~RF~~l 155 (233)
T 2f31_A 96 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER-AEM----DE---------------VERFQPL 155 (233)
T ss_dssp SHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH-HHH----HT---------------SCTTHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-HHh----CC---------------cchHHHH
Confidence 356788889988899999999999999994 2234 77777777653 110 11 1123344
Q ss_pred HHhhcccCChHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005975 397 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (666)
Q Consensus 397 a~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (666)
-+.+.+..+.++....++..|.++-+.+++ ++|..||+
T Consensus 156 v~~l~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ 193 (233)
T 2f31_A 156 LDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRS 193 (233)
T ss_dssp HHTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHH
Confidence 444555678999988888888887766544 46777775
No 147
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=60.39 E-value=38 Score=32.90 Aligned_cols=178 Identities=9% Similarity=-0.059 Sum_probs=100.2
Q ss_pred CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005975 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEF 223 (666)
Q Consensus 144 vp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~ 223 (666)
..+.+-..++..++++-+.+++=..|++|+.|-... ++... .+-..-...+....+++..|.|..|+.++...
T Consensus 10 ~~d~~~a~~~~~y~k~~~~flGV~~P~lR~laK~~~----k~~~~---~~~~~~~~~~~~L~~s~~~E~r~la~~~l~~~ 82 (220)
T 2b6c_A 10 QKNPETAAKMSAYMKHQFVFAGIPAPERQALSKQLL----KESHT---WPKEKLCQEIEAYYQKTEREYQYVAIDLALQN 82 (220)
T ss_dssp CCCHHHHHHHHHHTTTSSCCCCCCHHHHHHHTHHHH----HHHTT---SCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCCeeeCCChHHHHHHHHHHH----HHhcc---CcccchHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 333344444555555556777878899998875432 22100 11111114444445667788999998888643
Q ss_pred HHhcCcccccchHhHHHHHhhhhcC-CcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005975 224 VKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (666)
Q Consensus 224 i~l~~~~l~pylp~lL~~LL~~Lsd-~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~W 302 (666)
-... .+..++.+-..+.+ ++=++-+..+.+.+.+...- -..+.+.+.+-..|++.-+|-+|+.-
T Consensus 83 ~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~--------~~~~~~~i~~W~~s~~~w~rR~ai~~ 147 (220)
T 2b6c_A 83 VQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH--------LTELPTIFALFYGAENFWNRRVALNL 147 (220)
T ss_dssp GGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS--------GGGHHHHHHHHTTCSSHHHHHHHHHT
T ss_pred HhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC--------hHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2111 23344333333332 22222232224344333221 13466778888888887777666653
Q ss_pred HHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005975 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (666)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~ 349 (666)
+.. ..+ ..+.+.+++.+-..+.|++.-|....-|.|..++.
T Consensus 148 ~l~----~~~--~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 148 QLM----LKE--KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp TTT----CGG--GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHH----HHH--CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 311 111 24556677777678899999999999999999995
No 148
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.23 E-value=31 Score=31.25 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=53.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
-.+.+..+.+.+.+.+..+.+.||.-+-.+...|+..+...+ .+.+..+.+.++..++.|+.+.+.++..-+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999988765322 122222333334567899999998876655
No 149
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=59.29 E-value=95 Score=28.33 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=56.6
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhh--HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD------~s~eVv~~~l~lLa~Is 348 (666)
...+..+.+.+.+.+..+.+.||.-|-.+...|+..+...+ .+.+..|.+.+++ ..++|+.+.++++..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999998875433 2455566777764 36799999998877666
No 150
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=57.99 E-value=79 Score=39.06 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=89.8
Q ss_pred CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005975 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (666)
Q Consensus 228 ~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~ 307 (666)
...+..|+|.++...-.++...++.++..+......+.+... ...-.++++.|..+..+.+...--+|++-|..++
T Consensus 391 ~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd----~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~ 466 (1323)
T 3s4w_B 391 YLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD----TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELI 466 (1323)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHH
Confidence 456788999999999999999999999988887776665542 1112688888888876666666667999999999
Q ss_pred hhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
...|+.+.++.. .+..+|..+++=++.=+.+...+|+.++
T Consensus 467 ~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 467 VLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 999999988665 4556778888877665666788888777
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=54.73 E-value=98 Score=28.97 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=54.8
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD------~s~eVv~~~l~lLa~Is 348 (666)
.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+...+. +.+..|.+.++. ..++|+.+.++++..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999987763222 234445555542 35789999998877766
No 152
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.66 E-value=50 Score=30.77 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=51.7
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHhh------hhHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005975 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH------FLNDIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (666)
Q Consensus 278 ~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~~------~l~~l~p~LL~~LsD-~s~eVv~~~l~lLa~Is 348 (666)
.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+.. +++.+.. .++. .+++|+.+.++++..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~----l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA----VIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH----HHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH----HHccCCCHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999887652 4444443 3333 56789999988766555
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.67 E-value=44 Score=32.75 Aligned_cols=78 Identities=10% Similarity=0.129 Sum_probs=55.7
Q ss_pred HhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhc
Q 005975 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 112 L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~--yLp~fL~gLf~lLsD-~~~eVR~~A~~~L~~fL~eI~~ 188 (666)
-..-+..|..|+...||.+...++.-+..+.+-.|..+.. -=-+|++.|.+++.. ++++||+.+.+.+..-...++.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445666788899999999999999998887766654321 123555555555533 6789999998888888887765
Q ss_pred C
Q 005975 189 S 189 (666)
Q Consensus 189 ~ 189 (666)
.
T Consensus 123 ~ 123 (226)
T 3zyq_A 123 E 123 (226)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=51.47 E-value=19 Score=41.47 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=36.0
Q ss_pred cHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 111 ~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
+.+.-+.+|-..+ .+|.||.+||+||.. .++.++..|||.+++.|-
T Consensus 108 ~~~dALeLL~~~f--~~~~VR~yAV~~L~~---~~de~L~~YLlQLVQALK 153 (696)
T 2x6h_A 108 DVEDALELLSPTF--THPQVRKYAVSRLAQ---APDEDLLLYLLQLVQALK 153 (696)
T ss_dssp CHHHHHHHHSTTC--CCHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHhcccC--CCHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHH
Confidence 3444455555444 789999999999986 588999999999999873
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=49.49 E-value=29 Score=31.81 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=44.4
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHH
Q 005975 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQ 356 (666)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~-~~~~F~~ 356 (666)
..++.|.+=-..+.-|..+....+. .....+.+.|++.|.+.++.|+-|+|.+|..++. +.+.|..
T Consensus 20 Ts~d~~~~pgylm~EIA~~T~~s~~---~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~ 86 (140)
T 1vdy_A 20 TSDEDKVAPVYKLEEICDLLRSSHV---SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRR 86 (140)
T ss_dssp TCSCSSCCCHHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred hcCCCCCCcHHHHHHHHHHHHhcch---hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHH
Confidence 3444455444444444444433322 2347899999999999999999999999999994 4455544
No 156
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=47.32 E-value=2e+02 Score=27.61 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=59.9
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005975 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (666)
Q Consensus 113 ~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~ 192 (666)
+.+.+.+.+-..+.|+.+|.+++... + +-.+ -.+.+.+++-+-..+.|+..=||+++.-+|.+..+ .
T Consensus 123 ~~~~~~i~~W~~s~~~w~rR~ai~~~--l---~~~~-~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k-------~ 189 (220)
T 2b6c_A 123 TELPTIFALFYGAENFWNRRVALNLQ--L---MLKE-KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK-------T 189 (220)
T ss_dssp GGHHHHHHHHTTCSSHHHHHHHHHTT--T---TCGG-GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT-------T
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH--H---HHHH-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-------h
Confidence 44667888899999999999987633 2 2211 24556666666668899999999987666555543 4
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005975 193 DYGRMAEILVQRAASPDEFTRLTAIT 218 (666)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~Al~ 218 (666)
+.+.+++++ +-..-+..+...|++
T Consensus 190 ~~~~v~~fl--~~~~l~~~~~r~Aik 213 (220)
T 2b6c_A 190 NPQWVEELM--KELVLSPLAQREGSK 213 (220)
T ss_dssp CHHHHHHHH--HHSCCCHHHHHHHTT
T ss_pred CHHHHHHHH--hhccCCHHHHHHHHH
Confidence 666677777 333344555555543
No 157
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=45.01 E-value=1e+02 Score=31.18 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHh
Q 005975 210 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (666)
Q Consensus 210 ~~irl~Al~WL~~~i~l~~~~l~pyl--p~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~ 287 (666)
|..|++++.-|+.+++....+.+.|+ .+++|..+..|....+--+.+|.-..+.++
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL---------------------- 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL---------------------- 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH----------------------
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh----------------------
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChHHHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcc
Q 005975 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (666)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L-sD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (666)
.=..+|..++.-+++. .++..++..++..+ .++++++.+...+.--++|+|..--+.+=..|...++
T Consensus 174 -------~dd~GL~YiC~t~eRF-----~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 174 -------LDDTGLAYICQTYERF-----SHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp -------HSHHHHHHHTSSHHHH-----HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred -------ccchhHHHHHccHHHH-----HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Q ss_pred cc--chhhhhHHHH--HHHHHhccCCh
Q 005975 367 VD--NSLLEKRGAL--IIRRLCVLLDA 389 (666)
Q Consensus 367 ~d--~~lLe~Rg~~--IIR~Lc~~L~~ 389 (666)
++ ...+++=... +..||..+++.
T Consensus 242 d~tf~~~l~~D~~~k~~l~qLl~n~~~ 268 (268)
T 2fv2_A 242 DTTFAQVLKDDTTTKRWLAQLVKNLQE 268 (268)
T ss_dssp SSTTHHHHTSCHHHHHHHHHHHHHSCC
T ss_pred ChHHHHHHhcCHHHHHHHHHHHHhcCC
No 158
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=43.37 E-value=55 Score=29.71 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhHH-HHhhhhhhHHHhhhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc
Q 005975 5 YSFLFEIIVEQFL-LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA 83 (666)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~~~yl~~Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~~il~~f~eIfd~L~kl~~ 83 (666)
...+.+++|--|| .+.++-..+..|-+.++|.|...|...|..=.|.-.+. ++. .--..-+..+-+.|.+++.
T Consensus 33 lp~LL~WLQD~NWPvA~~i~~~L~~~~~~l~p~I~~vl~s~D~~W~ywil~~---lv~---~~~~~~~~~l~~eL~rl~~ 106 (134)
T 3ut4_A 33 IFDLLKWLQDYNWPIAKDILPVVVLHQSIAMPHILTILQGNDIMWKYWVIKL---MIP---YLIYPNKQLVKSELERLSS 106 (134)
T ss_dssp HHHHHGGGSCTTSTTHHHHHHHHHHTHHHHHHHHHHHHHSSCHHHHHHHHHH---HGG---GCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHccHhhHHHHHHHHHcCChHHHHHHHHH---HHH---cCCHHHHHHHHHHHHHHHh
Confidence 4567788888999 78888888999999999999999988888777765433 221 1111235567777777776
Q ss_pred CC
Q 005975 84 DS 85 (666)
Q Consensus 84 D~ 85 (666)
.+
T Consensus 107 ~p 108 (134)
T 3ut4_A 107 LE 108 (134)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 159
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=43.22 E-value=82 Score=33.40 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=25.7
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005975 279 PILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (666)
Q Consensus 279 ~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~ 310 (666)
..+..+...+.+.+..+|..++.-|..+....
T Consensus 100 ~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 100 EGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 45678888888888999999998888877654
No 160
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=43.21 E-value=1.1e+02 Score=26.86 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=72.9
Q ss_pred chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---
Q 005975 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH--- 310 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~--- 310 (666)
++..-+...|..|..+.+.|...+.=+... . -..+.+++++.+++.......|+..|=-+-.+...+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~ 74 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIEN----K------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRK 74 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHT----G------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHh----H------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhccc
Confidence 344556667777777777787766555432 1 124688999999998778888999887777777665
Q ss_pred -hHHHhhhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 005975 311 -RTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAKDLQHFRQLVVFLVHN 364 (666)
Q Consensus 311 -p~~i~~~l~~l~p~LL~~LsD~s~-eVv~~~l~lLa~Is~~~~~F~~fm~~LL~l 364 (666)
+..+.+.+...+|.++....|++. .-+.+.+.+|.+ ..-|=..++..|-..
T Consensus 75 ~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~---r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 75 NAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWED---RNVYPEEMIVALREA 127 (132)
T ss_dssp TCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHH---HTSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHHH
Confidence 335566667777777777766542 223334444432 222223455555443
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=39.76 E-value=1e+02 Score=28.28 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=53.1
Q ss_pred hHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChHHHhhhhH--HHHHH-HHHhcC---CCCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDT-LLKALS---DPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~i~~~l~--~l~p~-LL~~Ls---D~s~eVv~~~l~lLa~Is 348 (666)
-.+.+.+|.+.+. +.+..+.+.||.-+-.+...|+..+...+. +.+.. |.+.++ ++..+|+.+.++++..-+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3577888999997 478889999999999999999887764222 23333 445553 455689999998876665
No 162
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=39.33 E-value=3.5e+02 Score=28.18 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=82.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhcc-hh-hhhH-HHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhcc-ccc
Q 005975 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DF-IIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE-SDQ 109 (666)
Q Consensus 35 ~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~r~-~i-l~~f-~eIfd~L~kl~~D~d~~Vr~gA-~~LdrLlKDIv~e-~~~ 109 (666)
..++..+...+.+.+.-|.-+|..+.. .+ .. ..+. .+=+..|.+...+.+.|..+=| .+|..++.- |.. .+-
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q--~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gv 197 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQ--EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGV 197 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH--TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhh--cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccch
Confidence 334444555555555555444444221 21 11 1111 2335667777788888887666 444444331 000 011
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhh---chH--------HHHHHHHHhcC---CCChhHHHHH
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG---FLP--------DFLDGLFNMLS---DSSHEIRQQA 175 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~---yLp--------~fL~gLf~lLs---D~~~eVR~~A 175 (666)
.+-+.||-.+...+.+.++.|-+.+++.+.++..-.+..... -.. ..+..|.+.|. ..+.++...|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 124667777777777788888888888888886654322111 111 01345556775 5678888888
Q ss_pred HHHHHHHHHHh
Q 005975 176 DSALWEFLQEI 186 (666)
Q Consensus 176 ~~~L~~fL~eI 186 (666)
-.+++.++...
T Consensus 278 mtLIN~lL~~a 288 (339)
T 3dad_A 278 VTLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88888887654
No 163
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=37.42 E-value=90 Score=28.74 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=54.0
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchH--HHHHH-HHHhcCCC---ChhHHHHHHHHHHHHHHHhhc
Q 005975 116 IPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSDS---SHEIRQQADSALWEFLQEIKN 188 (666)
Q Consensus 116 IPlL~eri~~-~np~vR~~alswL~~L~svp~~~Li~yLp--~fL~g-Lf~lLsD~---~~eVR~~A~~~L~~fL~eI~~ 188 (666)
+..|..|+.. .||.+-..++.-+..+.+-.|..+...+- +|+.. |.+++++. +.+||+.+.+++..-...++.
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4445667764 68888888888888888888877655554 67765 67777653 457999998888888877765
Q ss_pred CC
Q 005975 189 SP 190 (666)
Q Consensus 189 ~~ 190 (666)
.|
T Consensus 135 ~p 136 (152)
T 3rru_A 135 GV 136 (152)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 164
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=32.49 E-value=5.3e+02 Score=28.18 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=85.4
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHH------HHHHHHHhcCC--CChhHHHHHHHHHHHHHHHhh
Q 005975 117 PLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPD------FLDGLFNMLSD--SSHEIRQQADSALWEFLQEIK 187 (666)
Q Consensus 117 PlL~eri~-~~np~vR~~alswL~~L~svp~~~Li~yLp~------fL~gLf~lLsD--~~~eVR~~A~~~L~~fL~eI~ 187 (666)
|.|.+-.+ +....|-..++..+.++.+....+-...+++ .++.|-.+-.. +++|+...-..+.+.+-+.++
T Consensus 274 ~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 274 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44444444 3567777788888888887653211111221 12222222222 456777665444333333333
Q ss_pred cCC-------------------CC--------------CHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHH
Q 005975 188 NSP-------------------SV--------------DYGRMAEILVQRAA----------SPDEFTRLTAITWINEFV 224 (666)
Q Consensus 188 ~~~-------------------~~--------------d~~~iI~iLl~~~~----------s~d~~irl~Al~WL~~~i 224 (666)
.-. |. +--+++..|++-+. +.|+.+-..||+=|++|+
T Consensus 354 ~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv 433 (480)
T 1ho8_A 354 ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 433 (480)
T ss_dssp TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence 210 10 11235555555554 346777788999999999
Q ss_pred HhcCccc--ccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHH
Q 005975 225 KLGGDQL--VPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (666)
Q Consensus 225 ~l~~~~l--~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (666)
...|..- +.-+ +.=..++..|++++++||..|-.|.+.+|.
T Consensus 434 r~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 434 ELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9876541 1111 234578889999999999999999888763
No 165
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=31.93 E-value=24 Score=39.97 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 126 ~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
.|+.||.+||+||. ..++.++..||+.++++|-
T Consensus 107 ~d~~VR~yAV~~L~---~~~D~eL~lYLlQLVQALK 139 (614)
T 3ls8_A 107 TNPTVRRYAVARLR---QADDEDLLMYLLQLVQALK 139 (614)
T ss_dssp CCHHHHHHHHHHHT---TSCHHHHHHTHHHHHHHGG
T ss_pred CCHHHHHHHHHHHH---hCChHHHHHHHHHHHHhhh
Confidence 78999999999985 5888999999999999884
No 166
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=31.35 E-value=5.1e+02 Score=27.63 Aligned_cols=199 Identities=13% Similarity=0.178 Sum_probs=112.2
Q ss_pred HHhhhh-hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCch--hHHHHHHHHHHHH
Q 005975 27 ETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDA--NVQSAAHLLDRLV 100 (666)
Q Consensus 27 ~~yl~~-Il~pVL~~~~D~d~rVR~~A~eaL~nI~Kv~---r~~il~~f~eIfd~L~kl~~D~d~--~Vr~gA~~LdrLl 100 (666)
.+|++. .+-.++..|..+|+|-|.+....+..|-... |..+...++.+| ...+-.++. .|-+-=+.+..++
T Consensus 123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif---~~fiye~e~~~GIaeLLeilgsIi 199 (403)
T 3fga_B 123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF---YRFIYETEHHNGIAELLEILGSII 199 (403)
T ss_dssp TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHhcCcccCCCHHHHHHHHHHHH
Confidence 456554 5777899999999999999999888874321 223333334443 333322221 1211112333433
Q ss_pred HHhhccc----------------ccccHhhhHHHHHHhhc----------------------CCCHHHHHHHHHHHH-Hh
Q 005975 101 KDIVTES----------------DQFSIEEFIPLLRERMN----------------------VLNPYVRQFLVGWIT-VL 141 (666)
Q Consensus 101 KDIv~e~----------------~~f~L~~fIPlL~eri~----------------------~~np~vR~~alswL~-~L 141 (666)
.+..... ....+..+=|.|..|+. ..|+.--...++=+. .+
T Consensus 200 nGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iL 279 (403)
T 3fga_B 200 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 279 (403)
T ss_dssp HHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 3322110 12234444445555442 233333333333343 44
Q ss_pred hcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH--HHHHHHhhcCCCCCHHHHHHHHHHhc-----CCCCHHHHH
Q 005975 142 DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL--WEFLQEIKNSPSVDYGRMAEILVQRA-----ASPDEFTRL 214 (666)
Q Consensus 142 ~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L--~~fL~eI~~~~~~d~~~iI~iLl~~~-----~s~d~~irl 214 (666)
..+++.++....+.++..+.++++.++-.|-..|.... ..++..|.. +-..++|++...+ .+=++.+|.
T Consensus 280 e~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~----n~~~IlPii~p~L~~~~~~HWn~~v~~ 355 (403)
T 3fga_B 280 DVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD----NAAKILPIMFPSLYRNSKTHWNKTIHG 355 (403)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT----THHHHHHHHHHHHHHTTSCCSCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH----hHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 45667788888888899999999999888777664433 122333322 3355666655443 222689998
Q ss_pred HHHHHHHHHHHhcCcccc
Q 005975 215 TAITWINEFVKLGGDQLV 232 (666)
Q Consensus 215 ~Al~WL~~~i~l~~~~l~ 232 (666)
.+..-+..|.++.+.-+-
T Consensus 356 l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 356 LIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp HHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhCHHHHH
Confidence 888888888888776543
No 167
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.05 E-value=48 Score=20.93 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHh
Q 005975 424 SELSELRDLLKK 435 (666)
Q Consensus 424 ~El~~lR~~L~~ 435 (666)
+.+..||++||.
T Consensus 15 erlrklrkklrs 26 (27)
T 3twe_A 15 ERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 456677777764
No 168
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=28.23 E-value=6e+02 Score=27.46 Aligned_cols=183 Identities=17% Similarity=0.266 Sum_probs=108.6
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005975 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (666)
Q Consensus 114 ~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d 193 (666)
.|+-.|.+.+.+.||+-|.++..-+..+ +.-..+--+-+|++..+.+-+|+-+.. .+..
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrI-------------------Y~Kf~~~R~~Irk~i~nif~~fi~e~e--~~nG 220 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRI-------------------YGKFLGLRAYIRKQINNIFYRFIYETE--HHNG 220 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHH-------------------HHSCTTTHHHHHHHHHHHHHHHHHTCS--CCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHhcccC--CCCC
Confidence 5788888888888998888776655433 222333345567777676777776542 3455
Q ss_pred HHHHHHHHHHhcCC---C-CHHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhh
Q 005975 194 YGRMAEILVQRAAS---P-DEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (666)
Q Consensus 194 ~~~iI~iLl~~~~s---~-d~~irl~Al~WL~~~i~l~-~~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (666)
++++++++-.-+.. | .++.+.+ +.+.++-+. ...+.-|-+++.-.+...+. .++.
T Consensus 221 IaeLLeilgSIinGfa~PLKeehk~f---l~~vLlPLhk~~~l~~y~~qL~ycv~qf~e-KDp~---------------- 280 (449)
T 2npp_B 221 IAELLEILGSIINGFALPLKEEHKIF---LLKVLLPLHKVKSLSVYHPQLAYCVVQFLE-KDST---------------- 280 (449)
T ss_dssp HHHHHHHHHHHHSSCCSSCCHHHHHH---HHHTTGGGGGSSCGGGTHHHHHHHHHHHHH-HCGG----------------
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHH---HHHHHHHHHccchhHHhHHHHHHHHHHHHh-cCcH----------------
Confidence 67777777665544 2 2444432 223333322 22233333333333222221 0100
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005975 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (666)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~-p~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lL 344 (666)
-...++..|..+---.+..-.+.-|.-+..+.+.. |+++......+|..+-++++.+.-.|.+.|+.+|
T Consensus 281 -------L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w 350 (449)
T 2npp_B 281 -------LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 350 (449)
T ss_dssp -------GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred -------hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 01345555555544445555666677777788765 6677788889999999999999999999998654
No 169
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=28.14 E-value=1.9e+02 Score=25.35 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---
Q 005975 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--- 228 (666)
Q Consensus 152 yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~--- 228 (666)
++..-|+..++-|+.+...|.+.+.=|+.. .-+.+.|+..+.+++....+.-|+..+.-++.+++-++
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h---------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~ 75 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIEN---------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKN 75 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHT---------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccC
Confidence 455566666777787777787776444332 12457889999999988888889988888888888753
Q ss_pred -cccccchHhHHHHHhhhhcCCcHHHHHHHHH
Q 005975 229 -DQLVPYYADILGAILPCISDKEEKIRVVARE 259 (666)
Q Consensus 229 -~~l~pylp~lL~~LL~~Lsd~~~eIR~~A~~ 259 (666)
..+.+.+...+|.++....+ ++.|....+
T Consensus 76 ~~~f~~~f~~~l~~~~~~~~~--~~~~~kl~~ 105 (132)
T 4flb_A 76 AIIFRESFADVLPEAAALVKD--PSVSKSVER 105 (132)
T ss_dssp CTHHHHHHHTTHHHHHHTTCS--TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 34455566666666665543 344443333
No 170
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.41 E-value=4.1e+02 Score=25.36 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc------cchHhHHHHHhhhhcCCcHHHH
Q 005975 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV------PYYADILGAILPCISDKEEKIR 254 (666)
Q Consensus 181 ~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~~l~------pylp~lL~~LL~~Lsd~~~eIR 254 (666)
++.+.|... ...-...+..|.+++.++++-+++.|+.-+..+++-+|..|. .|+..+...+ .. ..++++|
T Consensus 28 eicd~i~~~-~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~-~~--~~~~~Vk 103 (220)
T 1dvp_A 28 LICDEINQK-DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL-ES--TPHENVR 103 (220)
T ss_dssp HHHHHHHTT-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHH-HH--CSCHHHH
T ss_pred HHHHhhcCC-CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHh-cC--CCcHHHH
Confidence 344444332 224455667777888999999999999999988887765442 2455544432 21 4567888
Q ss_pred HHHHHHHHHHHHhhCC
Q 005975 255 VVARETNEELRAIKAD 270 (666)
Q Consensus 255 ~~A~~~n~~L~~~i~~ 270 (666)
+.+.+..+........
T Consensus 104 ~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 104 QKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7777766666555543
No 171
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.77 E-value=1.6e+02 Score=28.71 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=52.3
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChHHHh------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005975 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL------HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (666)
Q Consensus 277 l~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~i~------~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is 348 (666)
-.+.+.+|.+.+.+.++.+.+.||.-|-.+...|+..+. .+++.+.. +++. ...++|..+.++++..-+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~-l~~~--~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD-LLKR--QVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH-HHHH--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH-Hhcc--CCCHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999888654 34443332 3332 356789999998877665
No 172
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=26.14 E-value=35 Score=40.83 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 126 ~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
.|+.||.+|+.||. +.++.++..|||.+++.|-
T Consensus 495 ~d~~VR~yAV~~L~---~~~d~~l~~YL~QLVQaLk 527 (961)
T 1e7u_A 495 SDENVRAIAVQKLE---SLEDDDVLHYLLQLVQAVK 527 (961)
T ss_dssp CCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 68999999999986 6889999999999999773
No 173
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=24.11 E-value=3.8e+02 Score=23.84 Aligned_cols=116 Identities=9% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHH------HHHHHhccCC
Q 005975 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGAL------IIRRLCVLLD 388 (666)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~------IIR~Lc~~L~ 388 (666)
.+|.++.|...|..|+...+.|...+.|++ .+..+-+.++..+.+.|.+...-.+.|-++ |+.+ |+.-+
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l----~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqn-sk~k~ 75 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLL----LQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQ-AKGQK 75 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHH----TCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH-HGGGT
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHH-HhhcC
Q ss_pred hHHHHHHHHHhhcc-------cCChHHHHHHHHHHHHH----hccchhHHHHHHHHHh
Q 005975 389 AERVYRELSTILEG-------EADLDFACTMVQALNLI----LLTSSELSELRDLLKK 435 (666)
Q Consensus 389 ~E~Iy~~la~iL~~-------~~dl~F~~~mVq~Ln~i----LLTs~El~~lR~~L~~ 435 (666)
+...-..|+..|.+ ..|.+.-.++..+|+.= ....+.+.+||+.|.+
T Consensus 76 ~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~ 133 (142)
T 2km4_A 76 IIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAA 133 (142)
T ss_dssp CCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHh
No 174
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=23.53 E-value=62 Score=38.60 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=36.3
Q ss_pred ccHhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005975 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (666)
Q Consensus 110 f~L~~fIPlL~eri~~~np~vR~~alswL~~L~svp~~~Li~yLp~fL~gLf 161 (666)
.+...-+++|-..+ .||.||++|+.|+. +.++.++..|||.+++.|-
T Consensus 470 ~~~~~ALeLL~~~f--~d~~Vr~yAv~~L~---~~~d~~l~~yL~QLVQaLk 516 (940)
T 2wxf_A 470 LPVLSALELLDFSF--PDCYVGSFAIKSLR---KLTDDELFQYLLQLVQVLK 516 (940)
T ss_dssp CCHHHHHHHTSTTC--CCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHhcCCcC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 34455556665443 58999999999985 5888999999999998773
No 175
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=23.17 E-value=3.2e+02 Score=23.94 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=48.9
Q ss_pred chHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005975 152 FLPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 152 yLp~fL~gLf~lLsD--~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
-.-.||..|.++.+| .++||-..+.+++..++. ..++.+++-.-|-..+++ -+..
T Consensus 21 Kck~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~-----~~i~~EeFt~~Lq~~lns------------------~pqP 77 (114)
T 2p6v_A 21 XCXNFLSTLIXLASSGXQSTETAANVXELVQNLLD-----GXIEAEDFTSRLYRELNS------------------SPQP 77 (114)
T ss_dssp HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHTTC------------------CCCT
T ss_pred HHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHcC------------------CCCc
Confidence 455678888888888 677776665444444442 223333333333333322 2345
Q ss_pred ccccchHhHHHHHhhhhcCCcHHHHH
Q 005975 230 QLVPYYADILGAILPCISDKEEKIRV 255 (666)
Q Consensus 230 ~l~pylp~lL~~LL~~Lsd~~~eIR~ 255 (666)
.++||+-+-||++-..+.+...-|+.
T Consensus 78 ~LvPFLK~sLP~LR~~l~~~~~~i~Q 103 (114)
T 2p6v_A 78 YLVPFLXRSLPALRQLTPDSAAFIQQ 103 (114)
T ss_dssp THHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred chHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 67889999999998888776554443
No 176
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.21 E-value=3.3e+02 Score=23.66 Aligned_cols=119 Identities=13% Similarity=0.225 Sum_probs=67.0
Q ss_pred chHhHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--
Q 005975 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-- 311 (666)
Q Consensus 234 ylp~lL~~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR~aaL~WL~~L~~~~p-- 311 (666)
|-...+...|..|..+.+.|..++.=+... . -..+.++.++.+++.......|+..|=-+-.+...+.
T Consensus 4 f~~~~l~~~L~~L~~s~~sI~~~s~w~l~~----~------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~ 73 (135)
T 4fu3_A 4 FSESALEKKLSELSNSQQSVQTLSLWLIHH----R------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRK 73 (135)
T ss_dssp CCHHHHHHHHHHCCSSTTHHHHHHHHHHHT----G------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHccccHHHHHHHHHHHHHH----H------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc
Confidence 445566667777777777787766555422 1 1246888888888876666788888877767765542
Q ss_pred -----HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH-HHHHHHHHhhcc
Q 005975 312 -----TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF-RQLVVFLVHNFR 366 (666)
Q Consensus 312 -----~~i~~~l~~l~p~LL~~LsD~s~eVv~~~l~lLa~Is~~~~~F-~~fm~~LL~lf~ 366 (666)
..+.+.++.+|..+...-.+..-..+.+.+.+|.. ...| ..++..|-..|.
T Consensus 74 ~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~----r~vf~~~~i~~L~~~l~ 130 (135)
T 4fu3_A 74 GPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQE----RSVYGGEFIQQLKLSME 130 (135)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH----TTSSCHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCcCHHHHHHHHHHHh
Confidence 23344444555444443333323333444444442 2334 346666655543
No 177
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.87 E-value=3.6e+02 Score=24.21 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=64.5
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005975 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (666)
Q Consensus 150 i~yLp~fL~gLf~lLsD~~~eVR~~A~~~L~~fL~eI~~~~~~d~~~iI~iLl~~~~s~d~~irl~Al~WL~~~i~l~~~ 229 (666)
-....+|.+.|-.+-..+.+.|...+ .++.+= .-+...|+..+.+++....+..|+.++.-++.+++-.+.
T Consensus 6 ~~~~~~f~~~L~~L~~nSk~~I~~LT-----~~a~~~----~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~ 76 (144)
T 1sz9_A 6 EVIVKDFNSILEELTFNSRPIITTLT-----KLAEEN----ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS 76 (144)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHH-----HHHHHT----GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhccccHhHHHHHH-----HHHHHH----HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc
Confidence 34455666666554324444455443 333321 124678999999999888899999999999999998887
Q ss_pred ccccchHhHHHHHhhhh-cCCcHHHHHHHHH
Q 005975 230 QLVPYYADILGAILPCI-SDKEEKIRVVARE 259 (666)
Q Consensus 230 ~l~pylp~lL~~LL~~L-sd~~~eIR~~A~~ 259 (666)
.+.+++...++.++... ...++++|..-.+
T Consensus 77 ~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~r 107 (144)
T 1sz9_A 77 PYTIYFSRNLFNLYKRTYLLVDNTTRTKLIN 107 (144)
T ss_dssp THHHHHHTTHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 76666666666555432 2335566644433
Done!