BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005976
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 257/588 (43%), Positives = 340/588 (57%), Gaps = 67/588 (11%)
Query: 93 GYPTPFGATL--RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDV 150
G P P G+ D GVNFS+FS NA L L +L++ + K E+ NKTGD+
Sbjct: 15 GDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEIIEVK-----NKTGDI 69
Query: 151 WHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV-----ISRAQFGVLGP 205
WHVF+ G LY Y+ G + P+ G F+P K+++DPYAKA+ + A FG
Sbjct: 70 WHVFVPGLRPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFGYKIG 129
Query: 206 DEN------------CWPQMACLVPTPEDEFDWEGDLPLK---YPQRDLIIYEVHVRGFT 250
D+N P+ + P F+W+ + +K P +D +IYEVHV+GFT
Sbjct: 130 DQNQDLTYDERDSGEYVPKSVVINPY----FEWDDEDFIKGKKVPLKDTVIYEVHVKGFT 185
Query: 251 RHESSKTEH-PGTYLGVV--EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVN 307
+ E+ GTY G+ + + +LKDLGI +ELMP F + + + + N
Sbjct: 186 KLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGL-----TN 240
Query: 308 FWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND 367
+WGY IN+FSP YSS G C + FK +V E H GIEV++DVV+NHT EGN
Sbjct: 241 YWGYDPINFFSPECRYSSTG---CLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNH 297
Query: 368 KGPILSFRGVDNSVYYMLAPKGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHV 425
GP LSFRG+DN+ YYML P + Y +++G GNT N +HP V Q ++D LRYWVTEMHV
Sbjct: 298 LGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHV 357
Query: 426 DGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLI 485
DGFRFDLA+ + R + +N + I ++ DPIL VKLI
Sbjct: 358 DGFRFDLAAALARELYSVNMLNTFFIALQ--------------------QDPILSQVKLI 397
Query: 486 AEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQG 544
AE WD G G YQVG FP+ W+EWNGKYRD +R+F +G A L GSP++Y G
Sbjct: 398 AEPWDVGQGGYQVGNFPYQ--WAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLG 455
Query: 545 GGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANIL 604
+ P+ SIN+V +HDGF+L DLVSYNQKHN ANG +N DG N SWNCG EG +
Sbjct: 456 NNKTPFASINYVTSHDGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQN 515
Query: 605 VKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDV 652
V R +Q RNF + L+VSQG PMI GDE T+ GNNN +C DN++
Sbjct: 516 VVICREKQKRNFMITLLVSQGTPMILGGDELSRTQRGNNNAFCQDNEI 563
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/574 (37%), Positives = 311/574 (54%), Gaps = 51/574 (8%)
Query: 89 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148
Q++ G P P GA GVNF++FS++A LC+ ++ QE++ +G
Sbjct: 3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFD-ANGQEHRY-------DLPGHSG 54
Query: 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL---GP 205
D+WH +L + YGY+ G + P EGH F+P K+++DP A+ + + L G
Sbjct: 55 DIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGH 114
Query: 206 DENCWPQMACLVP---TPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPG 261
+E + A + P D +DWE D P + P IIYE HV+G T H E G
Sbjct: 115 NEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRG 174
Query: 262 TY--LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSP 319
TY LG +++LK LGI LEL+P +F + N+WGY+ + F+
Sbjct: 175 TYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGL-----SNYWGYNPVAMFAL 229
Query: 320 MISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDN 379
+Y+ + A++EF+ ++ HK GIEV++D+V NH+ E + GP+ S RG+DN
Sbjct: 230 HPAYACSP-----ETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDN 284
Query: 380 SVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRG 439
YY + G+++N++GCGNT N +HP V + CLRYWV HVDGFRFDLA++M R
Sbjct: 285 RSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRT 344
Query: 440 SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTG-GLYQVG 498
+ PL I N P+L VKLIAE WD G YQVG
Sbjct: 345 PEF---------------------RQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVG 383
Query: 499 IFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCA 558
FP +++EWN +RD R+F D GAFA S ++++ GR P +IN V A
Sbjct: 384 NFP--PLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTA 441
Query: 559 HDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFL 618
HDGF+L D V +N KHN ANGE+N DG +N S N G+EG ++ + + RR +
Sbjct: 442 HDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLT 501
Query: 619 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDV 652
L++SQG PM+ GDE+GH++ GNNN YC DN +
Sbjct: 502 TLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQL 535
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 187/518 (36%), Positives = 250/518 (48%), Gaps = 58/518 (11%)
Query: 177 GHYFDPTKIVLDPYAKAV---------------ISRAQFGVLGPDENCW-PQMACLVPTP 220
G F+P K++LDPYA+ V S A + D + P+ LVP+
Sbjct: 108 GDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTT--DSGIYAPKGVVLVPST 165
Query: 221 EDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEKLDHLKDLGIN 279
+ G P + Q+D +IYEVHVRGFT ++S ++ GTY G K +L LG+
Sbjct: 166 QST----GTKPTR-AQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVT 220
Query: 280 CLELMPCHEF-NELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINE 338
+E +P E N+ NS D N+WGY T NYFSP Y+ E
Sbjct: 221 AVEFLPVQETQNDANDVVPNS---DANQNYWGYMTENYFSPDRRYA---YNKAAGGPTAE 274
Query: 339 FKLLVREAHKRGIEVVMDVVFNHTVEGND-------KGPILSFRGVDNSVYYMLAPKGE- 390
F+ +V+ H GI+V MDVV+NHT EG I S+RG+DN+ YY L +
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQY 334
Query: 391 FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYG 450
FY+ +G G FN + V + IVD L YW M VDGFRFDLAS++ G+S +
Sbjct: 335 FYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVL--GNSCLNGAYTAS 392
Query: 451 IPIEGDLLTTGTPLRSPPLIDLISNDPILR------GVKLIAEAWDTGG-LYQVGIFPHW 503
P + S I+ I + +R G+ L AE W GG YQ+G FP
Sbjct: 393 APNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQ- 451
Query: 504 GIWSEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHD 560
WSEWNG +RD +RQ + + A GS NL+Q GR PWNSINF+ HD
Sbjct: 452 -GWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHD 510
Query: 561 GFSLADLVSYNQKHN-LANGEDNNDGETHNN-SWNCGQEGEFANILVKKLRRRQMRNFFL 618
G +L D+ S N +N A +DG T N SW+ +G A +RR R
Sbjct: 511 GMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWD---QGMSAGTGAAVDQRRAARTGMA 567
Query: 619 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCT 656
M+S G P++ GDEY T NNN Y D+ N T
Sbjct: 568 FEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLT 605
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 155/573 (27%), Positives = 250/573 (43%), Gaps = 121/573 (21%)
Query: 110 SIFSSNAVSATLCLITLSDLQ-------ENKVTEEIALDSFANKTGDVWHVFLKGDFKDM 162
+++S +A S + T S++Q + +T+++ + N T W + + G+ ++
Sbjct: 320 NVYSKDATSFRVWAPTASNVQLLLYNSEKGSITKQLEMQKSDNGT---WKLQVSGNLENW 376
Query: 163 LYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPED 222
Y Y+ + T+ +DPYA+A+ A G++ L T D
Sbjct: 377 YYLYQVTVNGT---------TQTAVDPYARAISVNATRGMI----------VDLKAT--D 415
Query: 223 EFDWEGDLPLKYPQR--DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK----------- 269
W+GD + P D +IYE HVR F+ +S ++ G YL E
Sbjct: 416 PAGWQGDHE-QTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTG 474
Query: 270 LDHLKDLGINCLELMPCHEFN---ELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSA 326
+D LK+LGI ++L P EFN E + +YN WGY NY P +Y++
Sbjct: 475 IDSLKELGITTVQLQPVEEFNSIDETQPDTYN----------WGYDPRNYNVPEGAYATT 524
Query: 327 GIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA 386
G I E K L++ H++ I V MDVV+NHT + + F + YY
Sbjct: 525 P---EGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDV----MVSDFDKIVPQYYYRTD 577
Query: 387 PKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI-----MTRGSS 441
G + N SG GN F HP+ ++F++D + YWV E HVDGFRFDL ++ M + S+
Sbjct: 578 SNGNYTNGSGXGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISN 637
Query: 442 LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFP 501
++N GI + G+ T GT L S+ + +G + GL +G+F
Sbjct: 638 ELHAINP-GIVLYGEPWTGGTS-------GLSSDQLVTKGQQ--------KGL-GIGVFN 680
Query: 502 HWGIWSEWNGKYRDIVRQ-FIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHD 560
I + +G D Q F G + GS Q P +IN+V +HD
Sbjct: 681 D-NIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGS---IQDFTSAPSETINYVTSHD 736
Query: 561 GFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCL 620
+L D + LA+ + + + +++ ++ + +
Sbjct: 737 NMTLWDKI-------LASNPSDTEAD--------------------RIKMDELAH--AVV 767
Query: 621 MVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVN 653
SQGVP + G+E TKGGN+N+Y + VN
Sbjct: 768 FTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVN 800
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/496 (27%), Positives = 212/496 (42%), Gaps = 113/496 (22%)
Query: 187 LDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDL-PLKYPQRDLIIYEVH 245
+D YAKAV + GV+ L P D+ W L P +P D +IYE H
Sbjct: 178 VDQYAKAVTVNGEKGVV------------LRP---DQMKWTAPLKPFSHPV-DAVIYETH 221
Query: 246 VRGFTRHESSKTEHPGTYLGVVEK-----------LDHLKDLGINCLELMPCHEF----N 290
+R F+ HE+S + G YL + E L ++K+LG+ +EL+P ++F
Sbjct: 222 LRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVDE 281
Query: 291 ELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDA---INEFKLLVREAH 347
E +YN WGY+ +++F+P SY+S HD E K ++ H
Sbjct: 282 EKPLDAYN----------WGYNPLHFFAPEGSYASNP-----HDPQTRKTELKQMINTLH 326
Query: 348 KRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPV 407
+ G+ V++DVVFNH V + P F ++ G+ N +G GN +
Sbjct: 327 QHGLRVILDVVFNH-VYKRENSP---FEKTVPGYFFRHDECGKPSNGTGVGNDIASERRM 382
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVY----GIPIEGDLLTTGTP 463
R+FI DC+ YW+ E +VDGFRFDL I+ + L+ GI + G+ TP
Sbjct: 383 ARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPGILLFGEGWDLATP 442
Query: 464 LRSPPLIDLISNDPILRGVKLIAEAW------DTGGLYQVGIFPHWGIWSEWNGKYRDIV 517
L L +N P + G+ + + +T L G ++ NG+ V
Sbjct: 443 LPHEQKAAL-ANAPRMPGIGFFNDMFRDAVKGNTFHLKATG-------FALGNGESAQAV 494
Query: 518 RQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA 577
I G+ G+ A A + +P SIN+V +HD + D +S+ A
Sbjct: 495 MHGIAGSSGWK-ALAPIVP-----------EPSQSINYVESHDNHTFWDKMSF------A 536
Query: 578 NGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 637
++N+ +R + R ++++QGVP I G E+
Sbjct: 537 LPQEND-----------------------SRKRSRQRLAVAIILLAQGVPFIHSGQEFFR 573
Query: 638 TKGGNNNTYCHDNDVN 653
TK G N+Y + +N
Sbjct: 574 TKQGVENSYQSSDSIN 589
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 146/572 (25%), Positives = 241/572 (42%), Gaps = 80/572 (13%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 12 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 66
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 67 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 124
Query: 212 QMACLVPT---PEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLG 265
+ A + P P+D G + + D +IYE HVR FT + T+ GT+
Sbjct: 125 KAAFVDPAKLGPQDLT--YGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEA 182
Query: 266 VVEKLDHLKDLGINCLELMPCHEF---NELEYFSYNSVLGDYKVNF-WGYSTINYFSPMI 321
+EKLD+LKDLG+ ++L+P + NEL+ S N+ WGY NYFS
Sbjct: 183 FIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTG 242
Query: 322 SYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV 381
YSS I EFK L+ E HKRG+ ++DVV+NHT + + F ++ +
Sbjct: 243 MYSSDP--KNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAK------VDLFEDLEPNY 294
Query: 382 YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSS 441
Y+ + G G G H + ++ ++D ++Y V VDGFRFD+ + ++
Sbjct: 295 YHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAA 351
Query: 442 LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI-- 499
+ + +L+ G R+ + N P + + DT ++ I
Sbjct: 352 SIEEAYKAARALNPNLIMLGEGWRTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRN 408
Query: 500 -----FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSIN 554
+P+ G + G RD+ F + L P ++ P + I
Sbjct: 409 NLKSGYPNEGQPAFITGGKRDVNTIF------------KNLIAQPTNFEADS--PGDVIQ 454
Query: 555 FVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 614
++ AHD +L D+++ + K + + E N E H R++R
Sbjct: 455 YIAAHDDLTLFDIIAQSIKKDPSKAE--NYAEIH----------------------RRLR 490
Query: 615 NFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
L ++ +QG P I G EYG TK N Y
Sbjct: 491 LGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 522
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 145/572 (25%), Positives = 241/572 (42%), Gaps = 80/572 (13%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 11 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 65
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 66 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 123
Query: 212 QMACLVPT---PEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLG 265
+ A + P P+D G + + D +IYE HVR FT + T+ GT+
Sbjct: 124 KAAFVDPAKLGPQDLT--YGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEA 181
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY---KVNF-WGYSTINYFSPMI 321
+EKLD+LKDLG+ ++L+P + + + L DY N+ WGY NYFS
Sbjct: 182 FIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTG 241
Query: 322 SYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV 381
YSS I EFK L+ E HKRG+ ++DVV+NHT + + F ++ +
Sbjct: 242 MYSSDP--KNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAK------VDLFEDLEPNY 293
Query: 382 YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSS 441
Y+ + G G G H + ++ ++D ++Y V VDGFRFD+ + ++
Sbjct: 294 YHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAA 350
Query: 442 LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI-- 499
+ + +L+ G R+ + N P + + DT ++ I
Sbjct: 351 SIEEAYKAARALNPNLIMLGEGWRTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRN 407
Query: 500 -----FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSIN 554
+P+ G + G RD+ F + L P ++ P + I
Sbjct: 408 NLKSGYPNEGQPAFITGGKRDVNTIF------------KNLIAQPTNFEADS--PGDVIQ 453
Query: 555 FVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 614
++ AHD +L D+++ + K + + E N E H R++R
Sbjct: 454 YIAAHDNLTLFDIIAQSIKKDPSKAE--NYAEIH----------------------RRLR 489
Query: 615 NFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
L ++ +QG P I G EYG TK N Y
Sbjct: 490 LGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 521
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 146/572 (25%), Positives = 241/572 (42%), Gaps = 80/572 (13%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 318 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 372
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 373 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 430
Query: 212 QMACLVPT---PEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLG 265
+ A + P P+D G + + D +IYE HVR FT + T+ GT+
Sbjct: 431 KAAFVDPAKLGPQDLT--YGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEA 488
Query: 266 VVEKLDHLKDLGINCLELMPCHEF---NELEYFSYNSVLGDYKVNF-WGYSTINYFSPMI 321
+EKLD+LKDLG+ ++L+P + NEL+ S N+ WGY NYFS
Sbjct: 489 FIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTG 548
Query: 322 SYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV 381
YSS I EFK L+ E HKRG+ ++DVV+NHT + + F ++ +
Sbjct: 549 MYSSDP--KNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAK------VDLFEDLEPNY 600
Query: 382 YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSS 441
Y+ + G G G H + ++ ++D ++Y V VDGFRFD+ + ++
Sbjct: 601 YHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAA 657
Query: 442 LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI-- 499
+ + +L+ G R+ + N P + + DT ++ I
Sbjct: 658 SIEEAYKAARALNPNLIMLGEGWRTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRN 714
Query: 500 -----FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSIN 554
+P+ G + G RD+ F + L P ++ P + I
Sbjct: 715 NLKSGYPNEGQPAFITGGKRDVNTIF------------KNLIAQPTNFEADS--PGDVIQ 760
Query: 555 FVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 614
++ AHD +L D+++ + K + + E N E H R++R
Sbjct: 761 YIAAHDNLTLFDIIAQSIKKDPSKAE--NYAEIH----------------------RRLR 796
Query: 615 NFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
L ++ +QG P I G EYG TK N Y
Sbjct: 797 LGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 828
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 141/587 (24%), Positives = 227/587 (38%), Gaps = 129/587 (21%)
Query: 93 GYPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDV 150
Y GA L G V S++S +A S T+ + + +N+V +A V
Sbjct: 130 AYSGNLGAVLNQDGSKVEASLWSPSADSVTMIIYDKDN--QNRV---VATTPLVKNNKGV 184
Query: 151 WHVFLKGDFKDMLYGYK-FDGKFSPQEGHYFDPTKIVLDPYAKAV-----------ISRA 198
W L D G K + G + E +LDPYAK++ I A
Sbjct: 185 WQTIL-----DTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKSLAEWDSNTVNDDIKTA 239
Query: 199 QFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---S 255
+ + P + PQ +++G ++D +IYE HVR FT +S
Sbjct: 240 KAAFVNPSQ-LGPQNLSFAKIA----NFKG-------RQDAVIYEAHVRDFTSDQSLDGK 287
Query: 256 KTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFW 309
GT+ EKLD+L+ LG+ ++L+P +E ++ +Y S +Y W
Sbjct: 288 LKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYN---W 344
Query: 310 GYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKG 369
GY +YF+ YS I E K L+ + HKRG+ V++DVV+NHT +
Sbjct: 345 GYDPQSYFALSGMYSEKPKDPSAR--IAELKQLIHDIHKRGMGVILDVVYNHTAK----- 397
Query: 370 PILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
F ++ + Y+ + G G G H + R+ +VD ++Y +E VDGFR
Sbjct: 398 -TYLFEDIEPNYYHFMNEDGSPRESFGGGR-LGTTHAMSRRVLVDSIKYLTSEFKVDGFR 455
Query: 430 FDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAW 489
FD+ + IE L +P +I +I E W
Sbjct: 456 FDMMGDHDAAA------------IE--LAYKEAKAINPNMI-------------MIGEGW 488
Query: 490 DT-GGLYQVGIFP---HWGIWSEWNGKYRDIVRQFIK------GTDGFAGAFAECLCG-- 537
T G + P W ++ G + D +R +K GT F + L G
Sbjct: 489 RTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIF 548
Query: 538 -----SPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSW 592
P ++ P + + ++ AHD +L D+++ ++ N
Sbjct: 549 KNIKAQPGNFEADS--PGDVVQYIAAHDNLTLHDVIA----------------KSINKDP 590
Query: 593 NCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTK 639
+E R++R + ++ SQG I G EYG TK
Sbjct: 591 KVAEED----------IHRRLRLGNVMILTSQGTAFIHSGQEYGRTK 627
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 50/200 (25%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFP----- 145
Query: 296 SYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355
WGY + ++ SY F+ LV EAHK+G+ V++
Sbjct: 146 ---------GKRDWGYDGVYLYAVQNSYGGP----------EGFRKLVDEAHKKGLGVIL 186
Query: 356 DVVFNHT-VEGN---DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF 411
DVV+NH EGN GP S + P G +N+ + VR+F
Sbjct: 187 DVVYNHVGPEGNYMVKLGPYFSQK--------YKTPWGLTFNFD------DAESDEVRKF 232
Query: 412 IVDCLRYWVTEMHVDGFRFD 431
I++ + YW+ E +VDGFR D
Sbjct: 233 ILENVEYWIKEYNVDGFRLD 252
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 50/200 (25%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFP----- 145
Query: 296 SYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355
WGY + ++ SY F+ LV EAHK+G+ V++
Sbjct: 146 ---------GKRDWGYDGVYLYAVQNSYGGP----------EGFRKLVDEAHKKGLGVIL 186
Query: 356 DVVFNHT-VEGN---DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF 411
DVV+NH EGN GP S + P G +N+ + VR+F
Sbjct: 187 DVVYNHVGPEGNYMVKLGPYFSQK--------YKTPWGLTFNFD------DAESDEVRKF 232
Query: 412 IVDCLRYWVTEMHVDGFRFD 431
I++ + YW+ E +VDGFR D
Sbjct: 233 ILENVEYWIKEYNVDGFRLD 252
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 50/200 (25%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFP----- 145
Query: 296 SYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355
WGY + ++ SY F+ LV EAHK+G+ V++
Sbjct: 146 ---------GKRDWGYDGVYLYAVQNSYGGP----------EGFRKLVDEAHKKGLGVIL 186
Query: 356 DVVFNHT-VEGN---DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF 411
DVV+NH EGN GP S + P G +N+ + VR+F
Sbjct: 187 DVVYNHVGPEGNYMVKLGPYFSQK--------YKTPWGLTFNFD------DAESDEVRKF 232
Query: 412 IVDCLRYWVTEMHVDGFRFD 431
I++ + YW+ E +VDGFR D
Sbjct: 233 ILENVEYWIKEYNVDGFRLD 252
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 95/200 (47%), Gaps = 50/200 (25%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFP----- 145
Query: 296 SYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355
WGY + ++ SY F+ LV EAHK+G+ V++
Sbjct: 146 ---------GKRDWGYDGVYLYAVQNSYGGP----------EGFRKLVDEAHKKGLGVIL 186
Query: 356 DVVFNHT-VEGN---DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF 411
DVV+NH EGN GP S + P G +N+ + VR+F
Sbjct: 187 DVVYNHVGPEGNYMVKLGPYFSQK--------YKTPWGLTFNFD------DAESDEVRKF 232
Query: 412 IVDCLRYWVTEMHVDGFRFD 431
I++ + YW+ E +VDGFR +
Sbjct: 233 ILENVEYWIKEYNVDGFRLE 252
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 94/199 (47%), Gaps = 50/199 (25%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFP----- 145
Query: 296 SYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355
WGY + ++ SY F+ LV EAHK+G+ V++
Sbjct: 146 ---------GKRDWGYDGVYLYAVQNSYGGP----------EGFRKLVDEAHKKGLGVIL 186
Query: 356 DVVFNHT-VEGN---DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF 411
DVV+NH EGN GP S + P G +N+ + VR+F
Sbjct: 187 DVVYNHVGPEGNYMVKLGPYFSQK--------YKTPWGLTFNFD------DAESDEVRKF 232
Query: 412 IVDCLRYWVTEMHVDGFRF 430
I++ + YW+ E +VDGFR
Sbjct: 233 ILENVEYWIKEYNVDGFRL 251
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 154/387 (39%), Gaps = 71/387 (18%)
Query: 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWH 152
Y P GA + V+ +++ A ++C D E + L ++ VW
Sbjct: 124 AYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFF---DGPAGPALETVQL----KESNGVWS 176
Query: 153 VFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTK------IVLDPYAKAVISRAQFGVLGPD 206
V ++++ Y Y+ D + PTK + DPYA+++ + L
Sbjct: 177 VTGPREWENRYYLYEVD---------VYHPTKAQVLKCLAGDPYARSLSANGARTWLVDI 227
Query: 207 ENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLG 265
N L P DE E P D+ IYE+H+R F+ H+ + ++ G +
Sbjct: 228 NN-----ETLKPASWDELADEK--PKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRA 280
Query: 266 V-------VEKLDHLKDLGINCLELMPCHEFN---------------ELEYFSYNSVLGD 303
+E L L D G+ + L+P F EL F S +
Sbjct: 281 FAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQ 340
Query: 304 YKVNF--------WGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355
V WGY+ + + P SY+S G I E++ +V+ ++ G+ VVM
Sbjct: 341 AAVVAIQEEDPYNWGYNPVLWGVPKGSYAS---DPDGPSRIIEYRQMVQALNRIGLRVVM 397
Query: 356 DVVFNHTVEGNDKGPILSFRGVDNSV---YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI 412
DVV+NH + GP +D V Y G+ N + NT + H +V + I
Sbjct: 398 DVVYNHL---DSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTAS-EHFMVDRLI 453
Query: 413 VDCLRYWVTEMHVDGFRFDL-ASIMTR 438
VD L W VDGFRFDL IM R
Sbjct: 454 VDDLLNWAVNYKVDGFRFDLMGHIMKR 480
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 93/425 (21%), Positives = 159/425 (37%), Gaps = 124/425 (29%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNS 299
++YE+H FT GT+ + KL +L +LG+ +E+MP +F
Sbjct: 138 VVYEMHTGTFTPE--------GTFRAAIAKLPYLAELGVTVIEVMPVAQFG--------- 180
Query: 300 VLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVF 359
G+ WGY + ++P +Y + ++FK + AH G+ VV+D+V
Sbjct: 181 --GERG---WGYDGVLLYAPHSAYGTP----------DDFKAFIDAAHGYGLSVVLDIVL 225
Query: 360 NHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN---YSGCGNTFNCNHPVVRQFIVDCL 416
NH G + + +LAP F++ + GN + VR++I++
Sbjct: 226 NHF-------------GPEGNYLPLLAPA--FFHKERMTPWGNGIAYDVDAVRRYIIEAP 270
Query: 417 RYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 476
YW+TE H+DG RFD + S+ V + I D+ L + ++IS
Sbjct: 271 LYWLTEYHLDGLRFDAIDQIEDSSARHVLVEI-AQRIREDITDRPIHLTTEDSRNIISLH 329
Query: 477 PILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKG-TDGFAGAFAEC- 534
P Q G P + +EWN + + V F G T + FA+
Sbjct: 330 P----------------RDQDGNAPLFT--AEWNDDFHNAVHVFATGETQAYYNDFADAP 371
Query: 535 --------------------LCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKH 574
G P + G+ P ++F+ HD Q
Sbjct: 372 EKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDFIQNHD-----------QVG 420
Query: 575 NLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDE 634
N A G+ L+ + + L++S +P++ MG+E
Sbjct: 421 NRAQGDR----------------------LITLAGAERTKVLLATLLLSPHIPLLFMGEE 458
Query: 635 YGHTK 639
YG ++
Sbjct: 459 YGESR 463
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 44/204 (21%)
Query: 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSY 297
D + YEVHV FT GTY EKL +LK+LG+ +++MP F+
Sbjct: 126 DCVFYEVHVGTFTPE--------GTYRAAAEKLPYLKELGVTAIQVMPLAAFD------- 170
Query: 298 NSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 357
WGY +++P Y + LV AH+ G+ V +DV
Sbjct: 171 -------GQRGWGYDGAAFYAPYAPYGRP----------EDLMALVDAAHRLGLGVFLDV 213
Query: 358 VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417
V+NH GP ++ Y+ F + G G + P +R+++ R
Sbjct: 214 VYNHF------GPSGNYLSSYAPSYF----TDRFSSAWGMG--LDYAEPHMRRYVTGNAR 261
Query: 418 YWVTEMHVDGFRFDLASIMTRGSS 441
W+ + H DG R D MT S
Sbjct: 262 MWLRDYHFDGLRLDATPYMTDDSE 285
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 146/660 (22%), Positives = 231/660 (35%), Gaps = 175/660 (26%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 134 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 186
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 187 -SDLKGAFYRYAM-TVYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 232
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 233 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 291
Query: 269 K----LDHLKDL---GINCLELMPC------HEFNEL---------------------EY 294
+ + HLK L G+ +EL+P +EF++ E+
Sbjct: 292 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEF 351
Query: 295 FSY-------NSVLGDYKVNF---------------------WGYSTINYFSPMISYSSA 326
Y VL K N WGY +Y P SY++
Sbjct: 352 AGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYAT- 410
Query: 327 GIRNCGHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---Y 382
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y
Sbjct: 411 --DPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYY 465
Query: 383 YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIM 436
L + C + H + + I D L W T+ +DGFRFDL A I+
Sbjct: 466 QRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQIL 525
Query: 437 T---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILR 480
+ R +L WDS + + I + +L TG S L D + P
Sbjct: 526 SAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDS 585
Query: 481 GVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC--- 536
G L G G+ P+ E D R T G AG A+ +
Sbjct: 586 GDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDK 637
Query: 537 ------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGE 586
GS Y G P +N+V HD +L D++SY
Sbjct: 638 DGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY---------------- 681
Query: 587 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 682 ------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 729
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 143/660 (21%), Positives = 231/660 (35%), Gaps = 175/660 (26%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 297 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 349
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 350 -SDLKGAFYRYAM-TVYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 395
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 396 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 454
Query: 269 K----LDHLKDL---GINCLELMPC------HEFNEL---------------------EY 294
+ + HLK L G+ +EL+P +EF++ E+
Sbjct: 455 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEF 514
Query: 295 FSY----------------------------NSVLGDYKVNFWGYSTINYFSPMISYSSA 326
Y N+++ WGY +Y P SY++
Sbjct: 515 AGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYAT- 573
Query: 327 GIRNCGHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---Y 382
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y
Sbjct: 574 --DPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYY 628
Query: 383 YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIM 436
L + C + H + + I D L W T+ +DGFRFDL A I+
Sbjct: 629 QRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQIL 688
Query: 437 T---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILR 480
+ R +L WDS + + I + +L TG S L D + P
Sbjct: 689 SAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDS 748
Query: 481 GVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC--- 536
G L G G+ P+ E D R T G AG A+ +
Sbjct: 749 GDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDK 800
Query: 537 ------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGE 586
GS Y G P +N+V HD +L D++SY
Sbjct: 801 DGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY---------------- 844
Query: 587 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 845 ------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 892
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 146/660 (22%), Positives = 231/660 (35%), Gaps = 175/660 (26%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 140 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 192
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 193 -SDLKGAFYRYAM-TVYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 238
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 239 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 297
Query: 269 K----LDHLKDL---GINCLELMPC------HEFNEL---------------------EY 294
+ + HLK L G+ +EL+P +EF++ E+
Sbjct: 298 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEF 357
Query: 295 FSY-------NSVLGDYKVNF---------------------WGYSTINYFSPMISYSSA 326
Y VL K N WGY +Y P SY++
Sbjct: 358 AGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYAT- 416
Query: 327 GIRNCGHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---Y 382
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y
Sbjct: 417 --DPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYY 471
Query: 383 YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIM 436
L + C + H + + I D L W T+ +DGFRFDL A I+
Sbjct: 472 QRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQIL 531
Query: 437 T---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILR 480
+ R +L WDS + + I + +L TG S L D + P
Sbjct: 532 SAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDS 591
Query: 481 GVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC--- 536
G L G G+ P+ E D R T G AG A+ +
Sbjct: 592 GDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDK 643
Query: 537 ------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGE 586
GS Y G P +N+V HD +L D++SY
Sbjct: 644 DGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY---------------- 687
Query: 587 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 688 ------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 735
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 146/660 (22%), Positives = 231/660 (35%), Gaps = 175/660 (26%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 136 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 188
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 189 -SDLKGAFYRYAM-TVYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 234
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 235 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 293
Query: 269 K----LDHLKDL---GINCLELMPC------HEFNEL---------------------EY 294
+ + HLK L G+ +EL+P +EF++ E+
Sbjct: 294 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEF 353
Query: 295 FSY-------NSVLGDYKVNF---------------------WGYSTINYFSPMISYSSA 326
Y VL K N WGY +Y P SY++
Sbjct: 354 AGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYAT- 412
Query: 327 GIRNCGHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---Y 382
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y
Sbjct: 413 --DPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYY 467
Query: 383 YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIM 436
L + C + H + + I D L W T+ +DGFRFDL A I+
Sbjct: 468 QRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQIL 527
Query: 437 T---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILR 480
+ R +L WDS + + I + +L TG S L D + P
Sbjct: 528 SAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDS 587
Query: 481 GVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC--- 536
G L G G+ P+ E D R T G AG A+ +
Sbjct: 588 GDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDK 639
Query: 537 ------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGE 586
GS Y G P +N+V HD +L D++SY
Sbjct: 640 DGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY---------------- 683
Query: 587 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 684 ------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 731
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 79/204 (38%), Gaps = 44/204 (21%)
Query: 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSY 297
D + YEVHV FT GTY EKL +LK+LG+ +++ P F+
Sbjct: 126 DCVFYEVHVGTFTPE--------GTYRAAAEKLPYLKELGVTAIQVXPLAAFD------- 170
Query: 298 NSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 357
WGY +++P Y + LV AH+ G+ V +DV
Sbjct: 171 -------GQRGWGYDGAAFYAPYAPYGRP----------EDLXALVDAAHRLGLGVFLDV 213
Query: 358 VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417
V+NH GP ++ Y+ F + G G + P R+++ R
Sbjct: 214 VYNHF------GPSGNYLSSYAPSYFT----DRFSSAWGXG--LDYAEPHXRRYVTGNAR 261
Query: 418 YWVTEMHVDGFRFDLASIMTRGSS 441
W+ + H DG R D T S
Sbjct: 262 XWLRDYHFDGLRLDATPYXTDDSE 285
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 60/222 (27%)
Query: 242 YEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKD--------LGINCLELMPCHEFNELE 293
YE+ VR F S + G G++EKLD+L D LG+N + LMP +
Sbjct: 8 YEIFVRSFY---DSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFK----- 59
Query: 294 YFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEV 353
++ GY +Y+ N + + +F LV AH+RGI+V
Sbjct: 60 -----------SPSYHGYDVTDYYK----------INPDYGTLEDFHKLVEAAHQRGIKV 98
Query: 354 VMDVVFNHTVE--------GNDK-----------GPILSFR--GVDNSVYYMLAPKGEFY 392
++D+ NHT E DK GP + +D + +P G +Y
Sbjct: 99 IIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYY 158
Query: 393 NYSGCG-NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433
Y G N N+P V++ ++ +YW+ + VDGFR D A
Sbjct: 159 GYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 35/203 (17%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++LIIYE R + + K +L + + L+ LK +GIN + LMP H
Sbjct: 4 KNLIIYEAFARAYPGEKGKK------FLSLEKDLERLKGMGINTVWLMPIHP-------- 49
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
V G Y+ +Y+ + + G +FK V+ AH+ + V+MD
Sbjct: 50 -TGVEGRKGTLGSPYAIRDYYEIDLLIGTKG----------DFKKFVKRAHELNMYVLMD 98
Query: 357 VVFNHTVEGN---DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413
+V NH N K P R + + P + ++S + F+ ++ +R++++
Sbjct: 99 MVLNHAAVDNVLVKKHPEWFLRDENGN------PTRKVPDWSDVVD-FDYSNGELREYMI 151
Query: 414 DCLRYWVTEMHVDGFRFDLASIM 436
+ +RYWV E VDGFR D+A ++
Sbjct: 152 NMMRYWVEEFDVDGFRCDVAGLV 174
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 59/195 (30%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
G G++E LD++++LGIN + P H ++ +Y+ + +LG
Sbjct: 53 GDLWGIMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLG------------ 100
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT----------VE 364
G++A FK L+ AH+R I+VV+D VFNH+ +E
Sbjct: 101 -----------------GNEA---FKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLE 140
Query: 365 GNDKGPILSFRGVDNSVYYMLAP-KGEF-YNYSG-CGN----TFNCNHPVVRQFIVDCLR 417
P +++ ++ + L+P GEF NY G GN FN ++P VR++I++
Sbjct: 141 NGPHSPWVNWFKIEG---WPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAE 197
Query: 418 YWVTEMHVDGFRFDL 432
YW+ + +DG+R D+
Sbjct: 198 YWL-KFGIDGWRLDV 211
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 153/375 (40%), Gaps = 80/375 (21%)
Query: 73 AELETAVIKKPQSQR-FQVSKGYPTPFGATLRDG---GVNFSIFSSNAVSATLCLITLSD 128
E++ + + + +R ++V +P F T DG GV+F++++ NA +L
Sbjct: 102 GEVDLHLFAEGRHERLWEVLGAHPRSF--TTADGVVSGVSFAVWAPNAKGVSLIG----- 154
Query: 129 LQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLD 188
+ N A +G VW +F D LY ++ G +G D D
Sbjct: 155 -EFNGWNGHEAPMRVLGPSG-VWELFWPDFPCDGLYKFRVHGA----DGVVTDRA----D 204
Query: 189 PYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEF---DWEGDLPLKYPQRDLI-IYEV 244
P+A FG P PQ A V + + + DW L+ P + + YEV
Sbjct: 205 PFA--------FGTEVP-----PQTASRVTSSDYTWGDDDWMAGRALRNPVNEAMSTYEV 251
Query: 245 HVRGFTRHESSKTEHPG-TYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLG 302
H+ + PG +Y + +L D++ D G +EL+P E + G
Sbjct: 252 HLGSW---------RPGLSYRQLARELTDYIVDQGFTHVELLPVAE---------HPFAG 293
Query: 303 DYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
WGY +Y++P + + ++F+ LV H+ GI V++D V H
Sbjct: 294 S-----WGYQVTSYYAPTSRFGTP----------DDFRALVDALHQAGIGVIVDWVPAHF 338
Query: 363 VEGNDKGPILSFRGVDNSVYYMLAPK-GEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVT 421
+ D + F G +Y PK GE ++ F+ P VR F+V YW+
Sbjct: 339 PK--DAWALGRFDG--TPLYEHSDPKRGEQLDWGTY--VFDFGRPEVRNFLVANALYWLQ 392
Query: 422 EMHVDGFRFDLASIM 436
E H+DG R D + M
Sbjct: 393 EFHIDGLRVDAVASM 407
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 53/193 (27%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
G G+++ LD+L DLGI + L P H+++ +YF + GD +
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKET-------- 224
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSF 374
K LV+ H++GI V++D VFNH G + P
Sbjct: 225 ------------------------LKTLVKRCHEKGIRVMLDAVFNHC--GYEFAPFQDV 258
Query: 375 RGVDNSVYY-----------MLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVT 421
+ Y P+ + ++ + N HP V+++++D YW+
Sbjct: 259 LKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIR 318
Query: 422 EMHVDGFRFDLAS 434
E +DG+R D+A+
Sbjct: 319 EFDIDGWRLDVAN 331
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 53/193 (27%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
G G+++ LD+L DLGI + L P H+++ +YF + GD +
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKET-------- 224
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSF 374
K LV+ H++GI V++D VFNH G + P
Sbjct: 225 ------------------------LKTLVKRCHEKGIRVMLDAVFNHC--GYEFAPFQDV 258
Query: 375 RGVDNSVYY-----------MLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVT 421
+ Y P+ + ++ + N HP V+++++D YW+
Sbjct: 259 LKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIR 318
Query: 422 EMHVDGFRFDLAS 434
E +DG+R D+A+
Sbjct: 319 EFDIDGWRLDVAN 331
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 39/203 (19%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
R+ +IY V VR ++ G + GV L +KDLG + L L+P + E+ +
Sbjct: 11 RNEMIYSVFVRNYS--------EAGNFAGVTADLQRIKDLGTDILWLLPINPIGEV---N 59
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
LG SP GI N + + +FK L AH+ G++V++D
Sbjct: 60 RKGTLG---------------SPYAIKDYRGI-NPEYGTLADFKALTDRAHELGMKVMLD 103
Query: 357 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGN---TFNCNHPVVRQFIV 413
+V+NHT S ++ ++ G+ N G + + H + Q+ +
Sbjct: 104 IVYNHTSPD-------SVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQI 156
Query: 414 DCLRYWVTEMHVDGFRFDLASIM 436
D L YW VDG+R D+A ++
Sbjct: 157 DTLLYW--SQFVDGYRCDVAPLV 177
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 54/194 (27%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
G GV++ LDHL LG+N + P H+++ +YF + GD
Sbjct: 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDK---------- 218
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS- 373
+ K LV H+RGI V++D VFNH+ G P +
Sbjct: 219 ----------------------DTLKKLVDLCHERGIRVLLDAVFNHS--GRTFPPFVDV 254
Query: 374 FRGVDNSVYYML-------------APKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 420
+ + S Y P + + + N HP V+++++ YW+
Sbjct: 255 LKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWI 314
Query: 421 TEMHVDGFRFDLAS 434
E +DG+R D+A+
Sbjct: 315 RETGIDGWRLDVAN 328
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 62/237 (26%)
Query: 233 KYPQ--RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFN 290
+YP ++ + Y+++ R F + + + G G++EKLD+LK LGI+ + + P
Sbjct: 15 EYPAWWKEAVFYQIYPRSF---KDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINP----- 66
Query: 291 ELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRG 350
Y+S D GY NY M Y + + +F LV E KR
Sbjct: 67 -----HYDSPNTDN-----GYDISNYRQIMKEYGT----------MEDFDSLVAEMKKRN 106
Query: 351 IEVVMDVVFNHTV------------------------EGNDKGP---ILSFRGVDNSVYY 383
+ +++DVV NHT +G D P SF G S +
Sbjct: 107 MRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFG--GSAWQ 164
Query: 384 MLAPKGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
A G++Y ++ N ++P VR+ + LR+W+ + V G RFD + ++
Sbjct: 165 KDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWL-DKGVSGMRFDTVATYSK 220
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 58/234 (24%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ ++Y+++ R F S + G G++ KLD+LK+LGI+ + L P +E
Sbjct: 7 KESVVYQIYPRSFM---DSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYE-------- 55
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
S D GY +Y M + + + ++ L+ E H+R ++++MD
Sbjct: 56 --SPNDDN-----GYDISDYCKIMNEFGT----------MEDWDELLHEMHERNMKLMMD 98
Query: 357 VVFNHTVEGNDKGPILSFRGVDNSV--YYMLAPKGEFYNYSGCGNTF------------- 401
+V NHT + ++ I S + DN YY+ P E + G F
Sbjct: 99 LVVNHTSDEHN-WFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDE 157
Query: 402 -------------NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSL 442
N ++ VRQ + + +++W+ E +DGFR D+ + +++ L
Sbjct: 158 YYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL-EKGIDGFRMDVINFISKEEGL 210
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 53/193 (27%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
G G+++ LD+L DLGI + L P H+++ +YF + GD +
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKET-------- 224
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS- 373
K L+ H++GI V++D VFNH G + P
Sbjct: 225 ------------------------LKTLIDRCHEKGIRVMLDAVFNHC--GYEFAPFQDV 258
Query: 374 FRGVDNSVY----------YMLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVT 421
++ ++S Y P+ + ++ N +P V+++++D YW+
Sbjct: 259 WKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIR 318
Query: 422 EMHVDGFRFDLAS 434
E +DG+R D+A+
Sbjct: 319 EFDIDGWRLDVAN 331
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 53/193 (27%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
G G+++ LD+L DLGI + L P H+++ +YF + GD +
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKET-------- 224
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS- 373
K L+ H++GI V++D VFNH G + P
Sbjct: 225 ------------------------LKTLIDRCHEKGIRVMLDAVFNHC--GYEFAPFQDV 258
Query: 374 FRGVDNSVY----------YMLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVT 421
++ ++S Y P+ + ++ N +P V+++++D YW+
Sbjct: 259 WKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIR 318
Query: 422 EMHVDGFRFDLAS 434
E +DG+R D+A+
Sbjct: 319 EFDIDGWRLDVAN 331
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETAAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETYAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R D+A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLDVAN 328
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 58/230 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ + Y+V+ R F + + + G G++EKLD+LK LGI+ + + P
Sbjct: 7 KEAVFYQVYPRSF---KDTNGDGIGDINGIIEKLDYLKALGIDAIWINP----------H 53
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
Y+S D GY +Y M Y + + +F L+ E KR + +++D
Sbjct: 54 YDSPNTDN-----GYDIRDYRKIMKEYGT----------MEDFDRLISEMKKRNMRLMID 98
Query: 357 VVFNHTVEGNDKGPILSFRGVDNSV--YYML--APKGEFYN------------------- 393
VV NHT + N+ + S DN YY A +G+ N
Sbjct: 99 VVINHTSDQNE-WFVKSKSSKDNPYRGYYFWKDAKEGQAPNNYPSFFGGSAWQKDEKTNQ 157
Query: 394 -----YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++ N ++P VRQ + LR+W+ + V G RFD + ++
Sbjct: 158 YYLHYFAKQQPDLNWDNPKVRQDLYAMLRFWL-DKGVSGLRFDTVATYSK 206
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 62/242 (25%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNS 299
+ Y+++ R F + + G G++EKLD+L +LG++ + + P Y S
Sbjct: 10 VAYQIYPRSFM---DANGDGIGDLRGIIEKLDYLVELGVDIVWICPI----------YRS 56
Query: 300 VLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVF 359
D GY +Y++ M + + +++F L+ +AH+RG++V++D+V
Sbjct: 57 PNADN-----GYDISDYYAIMDEFGT----------MDDFDELLAQAHRRGLKVILDLVI 101
Query: 360 NHTVEGNDKGP--ILSFRGVDN--------------------------SVYYMLAPKGEF 391
NHT +D+ P I S DN S + G++
Sbjct: 102 NHT---SDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQY 158
Query: 392 Y--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVY 449
Y + N + VRQ + + + +W+ + +DGFR D S + + L D N
Sbjct: 159 YLHIFDVKQPDLNWENSEVRQALYEMVNWWL-DKGIDGFRIDAISHIKKKPGLPDLPNPK 217
Query: 450 GI 451
G+
Sbjct: 218 GL 219
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R ++A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLNVAN 328
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ F+ LV EAH+RGI++++D VFNH +
Sbjct: 219 -------------------------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD 247
Query: 365 GNDKGPILSFRGV----DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPV 407
+FR V + S Y K NY +P
Sbjct: 248 -----QFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPE 302
Query: 408 VRQFIVDCLRYWVTEMHVDGFRFDLAS 434
V++++ D R+W+ E +DG+R ++A+
Sbjct: 303 VKEYLFDVARFWM-EQGIDGWRLNVAN 328
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 51/190 (26%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYKVNFWGYSTI 314
GT GV EKL +L DLG+ + L P H ++ ++YF + +LG
Sbjct: 47 GTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILG------------ 94
Query: 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEG-------ND 367
G++A+ L+ AH G+ V++D VFNHT G +
Sbjct: 95 -----------------GNEALRH---LLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXE 134
Query: 368 KGPILSFRGVDNSVYYMLAPKGEFYNYSG-CGN----TFNCNHPVVRQFIVDCLRYWVTE 422
G +R + + L NY GN P VR++++ +W+
Sbjct: 135 NGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-R 193
Query: 423 MHVDGFRFDL 432
VDG+R D+
Sbjct: 194 FGVDGWRLDV 203
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 59/205 (28%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G +G+ EK+DHL +LGIN + L P F+ L Y GY ++YF
Sbjct: 236 GDLIGIKEKIDHLVNLGINAIYLTPI--FSSLTYH--------------GYDIVDYFHVA 279
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV-----------EGNDKG 369
R G D F L+ E + I+V++D VF+HT +G +
Sbjct: 280 --------RRLGGD--RAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSS 329
Query: 370 -----PILSFRGVDNSVYYMLAPKGEF-----------YNYSGCGNTF-----NCNHPVV 408
I+ F V +L K + +NY + + N ++P V
Sbjct: 330 FKNFYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKV 389
Query: 409 RQFIVDCLRYWVTEMHVDGFRFDLA 433
R+FI + + +W T VDGFR D+A
Sbjct: 390 REFIKNVILFW-TNKGVDGFRMDVA 413
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 53/221 (23%)
Query: 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYN 298
+I Y+++VR F + G + G+ + +LK+LGI+ + LMP FS
Sbjct: 1 MIGYQIYVRSF---RDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPV--------FS-- 47
Query: 299 SVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 358
++F GY ++++S Y S EFK ++ H GI+VV+D+
Sbjct: 48 ------SISFHGYDVVDFYSFKAEYGSE----------REFKEMIEAFHDSGIKVVLDLP 91
Query: 359 FNHT---------------------VEGNDKGPILSFRGVDNSVYYMLAPKGEFYN--YS 395
+HT V N + + R D + G FY +
Sbjct: 92 IHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFG 151
Query: 396 GCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 436
N ++P V + + + + +M VDGFRFD A M
Sbjct: 152 PFSPDLNYDNPQVFDEMKRLVLH-LLDMGVDGFRFDAAKHM 191
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 8 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 57
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 58 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 99
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 157
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 158 QYYLHYLGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 207
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 8 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 57
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 58 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 99
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 157
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 158 QYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 207
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 7 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 56
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 57 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 98
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 156
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 157 QYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 206
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 7 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 56
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 57 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 98
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 156
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 157 QYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 206
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 8 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 57
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 58 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 99
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 157
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 158 QYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 207
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 35 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 84
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 85 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 126
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 127 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 184
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 185 QYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 234
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 110/307 (35%), Gaps = 71/307 (23%)
Query: 146 KTGDVWHVFLKGDFKDMLYGYKF---DGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV 202
K +W +F+ G LY Y+ +G ++ DPYA R
Sbjct: 59 KESGIWELFIPGAHNGQLYKYEMIDANGNL-----------RLKSDPYAFEAQMR----- 102
Query: 203 LGPDENCWPQMACLV-PTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPG 261
P+ A L+ PE E + IYEVH+ + RH +
Sbjct: 103 --------PETASLICGLPEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNF---- 150
Query: 262 TYLGVVEKLDHL----KDLGINCLELMPC--HEFNELEYFSYNSVLGDYKVNFWGYSTIN 315
+L E D L K +G LEL+P H F+ WGY
Sbjct: 151 -WLSYRELADQLVPYAKWMGFTHLELLPINEHPFD----------------GSWGYQPTG 193
Query: 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 375
++P + + ++F+ + AH G+ V++D V H D + F
Sbjct: 194 LYAPTRRFGTR----------DDFRYFIDAAHAAGLNVILDWVPGHFP--TDDFALAEFD 241
Query: 376 GVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD-LAS 434
G + +Y P+ E Y+ +N V F+V YW+ +D R D +AS
Sbjct: 242 GTN--LYEHSDPR-EGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVAS 298
Query: 435 IMTRGSS 441
++ R S
Sbjct: 299 MIYRDYS 305
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 309 WGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDK 368
+GY N+F+ +S S + K LV +AH G+ V+MDVV +H
Sbjct: 233 FGYHVTNFFA--VSSRSG--------TPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTD 282
Query: 369 GPILSFRGVD-----NSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEM 423
G G D + Y+ +G Y+ FN + V +F++ LRYW+ E
Sbjct: 283 G----LNGYDVGQNTHESYFHTGDRG--YHKLWDSRLFNYANWEVLRFLLSNLRYWMDEF 336
Query: 424 HVDGFRFDLASIM 436
DGFRFD + M
Sbjct: 337 MFDGFRFDGVTSM 349
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 309 WGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDK 368
+GY N+F+ +S S + K LV +AH G+ V+MDVV +H
Sbjct: 233 FGYHVTNFFA--VSSRSG--------TPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTD 282
Query: 369 GPILSFRGVD-----NSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEM 423
G G D + Y+ +G Y+ FN + V +F++ LRYW+ E
Sbjct: 283 G----LNGYDVGQNTHESYFHTGDRG--YHKLWDSRLFNYANWEVLRFLLSNLRYWMDEF 336
Query: 424 HVDGFRFDLASIM 436
DGFRFD + M
Sbjct: 337 MFDGFRFDGVTSM 349
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 60/231 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P Y S
Sbjct: 7 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINP-------HYAS 56
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
N+ GY +Y M Y + + +F L+ E KRG+ +++D
Sbjct: 57 PNTDN--------GYDISDYREVMKEYGT----------MEDFDRLMAELKKRGMRLMVD 98
Query: 357 VVFNHTV---------------------------EGNDKGPILSFRGVDNSVYYMLAPKG 389
VV NH+ +G++ SF G S + G
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTG 156
Query: 390 EFY-NYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
++Y +Y G N + P +R+ + LR+W+ + V G RF + ++
Sbjct: 157 QYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL-DKGVSGMRFATVATYSK 206
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 66/211 (31%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+++ +DHL+DLG+ + L P F+ Y Y+++ DYK S Y M
Sbjct: 262 GDLAGIMKHIDHLEDLGVETIYLTPI--FSSTSYHRYDTI--DYK------SIDKYLGTM 311
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNS 380
+F+ LV+ H R I++V+D+ +HT N+ + + R +NS
Sbjct: 312 ----------------EDFEKLVQVLHSRKIKIVLDITMHHTNPCNELF-VKALREGENS 354
Query: 381 VYY----MLAP-------------------KGEFYNYSGCGNT---------------FN 402
Y+ L+P E Y N FN
Sbjct: 355 PYWEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFN 414
Query: 403 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433
++P + +D ++W+ + +DGFR D+A
Sbjct: 415 HDNPRTVDYFIDITKFWIDK-GIDGFRIDVA 444
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 44/215 (20%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYK--VNFWGYSTINY 316
G + G++ K++ +L D+G+ + + E + SV+ D ++ GY ++
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVE-------NVFSVMNDASGSASYHGYWARDF 101
Query: 317 FSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGP--ILSF 374
P N +++F+ LV AH +GI+V++D NHT ++ P + +
Sbjct: 102 KKP----------NPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENG 151
Query: 375 RGVDN-SVYYMLAPKGEFYNYSGCGNTF-----------------NCNHPVVRQFIVDCL 416
R DN ++ Y + G TF N +PV+ +++ D +
Sbjct: 152 RLYDNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAV 211
Query: 417 RYWVTEMHVDGFRFDLASIMTRG--SSLWDSVNVY 449
+ W+ +M +DG R D M G SL D ++ Y
Sbjct: 212 KMWI-DMGIDGIRMDAVKHMPFGWQKSLMDEIDNY 245
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 28/99 (28%)
Query: 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY-KVNFWGYSTINYFSPMISY 323
GV +KLD+L LG+ L L P H + Y Y+ + DY KVN P +
Sbjct: 61 GVTQKLDYLNQLGVKALWLSPIHPC--MSYHGYD--VTDYTKVN-----------PQLGT 105
Query: 324 SSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
S +F LV EAH RGI++ +D V NHT
Sbjct: 106 ES------------DFDRLVTEAHNRGIKIYLDYVMNHT 132
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 30/100 (30%)
Query: 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINY--FSPMIS 322
GV +KLD+L LG+ L L P H ++ GY +Y +P +
Sbjct: 61 GVTQKLDYLNQLGVKALWLSPIHPC----------------XSYHGYDVTDYTKVNPQLG 104
Query: 323 YSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
S +F LV EAH RGI++ +D V NHT
Sbjct: 105 TES------------DFDRLVTEAHNRGIKIYLDYVXNHT 132
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 55/222 (24%)
Query: 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSV 300
+Y+++ + F + + G G+ KLD+L+ LG+ + L P Y+S
Sbjct: 11 VYQIYPKSFM---DTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPV----------YDSP 57
Query: 301 LGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFN 360
+ D GY NY + A I D N L+ +A RGI+++MD+V N
Sbjct: 58 MDDN-----GYDIANY------EAIADIFGNMADMDN----LLTQAKMRGIKIIMDLVVN 102
Query: 361 HTVEGNDKGPILSFRGVDNSV---YYMLAPK---------GEFYNYSGCGNTF------- 401
HT ++ + R +S YY+ + G + Y + +
Sbjct: 103 HT--SDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSK 160
Query: 402 -----NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
N + +RQ I D + +W+ + + GFR D+ ++ +
Sbjct: 161 KQPDLNWENANLRQKIYDMMNFWI-DKGIGGFRMDVIDMIGK 201
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 55/222 (24%)
Query: 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSV 300
+Y+++ + F + + G G+ KLD+L+ LG+ + L P Y+S
Sbjct: 11 VYQIYPKSFM---DTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPV----------YDSP 57
Query: 301 LGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFN 360
+ D GY NY + A I D N L+ +A RGI+++MD+V N
Sbjct: 58 MDDN-----GYDIANY------EAIADIFGNMADMDN----LLTQAKMRGIKIIMDLVVN 102
Query: 361 HTVEGNDKGPILSFRGVDNSV---YYMLAPK---------GEFYNYSGCGNTF------- 401
HT ++ + R +S YY+ + G + Y + +
Sbjct: 103 HT--SDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSK 160
Query: 402 -----NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
N + +RQ I D + +W+ + + GFR D+ ++ +
Sbjct: 161 KQPDLNWENANLRQKIYDMMNFWI-DKGIGGFRMDVIDMIGK 201
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 57/208 (27%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---STIN 315
G + G++ K++ + DLG+ L + E N +Y+ V +W T
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE-NIFATINYSGVTNTAYHGYWARDFKKTNP 110
Query: 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN-------DK 368
YF M +F+ L+ AH +GI++V+D NHT + D
Sbjct: 111 YFGTMA----------------DFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDN 154
Query: 369 GPILS-----------------FRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF 411
G ++ F ++N +Y L + FN N+ + ++
Sbjct: 155 GTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLAD----------FNHNNATIDKY 204
Query: 412 IVDCLRYWVTEMHVDGFRFDLASIMTRG 439
D ++ W+ +M VDG R D M G
Sbjct: 205 FKDAIKLWL-DMGVDGIRVDAVKHMPLG 231
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 43/204 (21%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---STIN 315
G + G++ K++ + DLG+ L + E N +Y+ V +W T
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE-NIFATINYSGVTNTAYHGYWARDFKKTNP 110
Query: 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 375
YF M +F+ L+ AH +GI++V+D NHT + +
Sbjct: 111 YFGTMA----------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAEN 154
Query: 376 G--VDNSVY---YMLAPKGEFYNYSGCG----------NT-----FNCNHPVVRQFIVDC 415
G DN Y G F++ G NT FN N+ + ++ D
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDA 214
Query: 416 LRYWVTEMHVDGFRFDLASIMTRG 439
++ W+ +M VDG R D M G
Sbjct: 215 IKLWL-DMGVDGIRVDAVKHMPLG 237
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 58/230 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ ++Y+V+ + F + S + G G++ +LD+L+ LGI+ + L P ++ ++
Sbjct: 8 KNAVVYQVYPKSF---QDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDN-- 62
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
GY +Y + Y + + L+ +A + I++VMD
Sbjct: 63 -------------GYDISDYEAIDPQYGTMA----------DMDELISKAKEHHIKIVMD 99
Query: 357 VVFNHTVEGNDKGPILSFRGVDNSV--YYML--------------APKGEFYNYSGCGNT 400
+V NHT + + K + + +G DN YY+ A G + Y
Sbjct: 100 LVVNHTSDQH-KWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQ 158
Query: 401 F------------NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438
+ N + +RQ I + + +W+ + + GFR D+ ++ +
Sbjct: 159 YYLHFFADQQPDLNWQNTELRQKIYNMMNFWL-DKGIGGFRMDVIELIGK 207
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 43/204 (21%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---STIN 315
G + G++ K++ + DLG+ L + E N +Y+ V +W T
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE-NIFATINYSGVTNTAYHGYWARDFKKTNP 110
Query: 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 375
YF M +F+ L+ AH +GI++V+D NHT + +
Sbjct: 111 YFGTMA----------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAEN 154
Query: 376 G--VDNSVY---YMLAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDC 415
G DN Y G F++ G + FN N+ + ++ D
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 416 LRYWVTEMHVDGFRFDLASIMTRG 439
++ W+ +M VDG R D M G
Sbjct: 215 IKLWL-DMGVDGIRVDAVKHMPLG 237
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 43/204 (21%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---STIN 315
G + G++ K++ + DLG+ L + E N +Y+ V +W T
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE-NIFATINYSGVTNTAYHGYWARDFKKTNP 110
Query: 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 375
YF M +F+ L+ AH +GI++V+D NHT + +
Sbjct: 111 YFGTMA----------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAEN 154
Query: 376 G--VDNSVY---YMLAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDC 415
G DN Y G F++ G + FN N+ + ++ D
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 416 LRYWVTEMHVDGFRFDLASIMTRG 439
++ W+ +M VDG R D M G
Sbjct: 215 IKLWL-DMGVDGIRVDAVKHMPLG 237
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 23/104 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
GT GV E+LD+L+ LG+ L LMP E E N GY+ +Y +
Sbjct: 108 GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGE-------------NDGGYAVQDYRAVR 154
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
+ +++ L R RGI +V+D+V NH
Sbjct: 155 PDLGT----------MDDLSALARALRGRGISLVLDLVLNHVAR 188
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 60/275 (21%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEH---------PGTYLGVVEKLDHLKDLGINCLELMPCH 287
R IY + F R + S T GT+ G+++KLD+++ +G + + P
Sbjct: 7 RSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPV- 65
Query: 288 EFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347
+ GD +W + +S +Y +A ++ K L H
Sbjct: 66 ----TAQLPQDCAYGDAYTGYW---QTDIYSLNENYGTA----------DDLKALSSALH 108
Query: 348 KRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY------NYSGCGNTF 401
+RG+ +++DVV NH G D + VD SV+ + + F+ NY
Sbjct: 109 ERGMYLMVDVVANHM--GYDG----AGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVE 162
Query: 402 NC--------------NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN 447
+C VV+ D + V+ +DG R D + + W N
Sbjct: 163 DCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK--DFWPGYN 220
Query: 448 -VYGIPIEGDLLTTGTPLRSPP---LIDLISNDPI 478
G+ G++L G P + P ++D + N PI
Sbjct: 221 KAAGVYCIGEVL-DGDPAYTCPYQNVMDGVLNYPI 254
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 43/204 (21%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---STIN 315
G + G++ K++ + DLG+ L + E N +Y+ V +W T
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE-NIFATINYSGVTNTAYHGYWARDFKKTNP 110
Query: 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 375
YF M +F+ L+ AH +GI++V+D NHT + +
Sbjct: 111 YFGTMA----------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAEN 154
Query: 376 G--VDNSVY---YMLAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDC 415
G DN Y G F++ G + FN N+ + ++ D
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 416 LRYWVTEMHVDGFRFDLASIMTRG 439
++ W+ +M VDG R M G
Sbjct: 215 IKLWL-DMGVDGIRVAAVKHMPLG 237
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 60/275 (21%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEH---------PGTYLGVVEKLDHLKDLGINCLELMPCH 287
R IY + F R + S T GT+ G+++KLD+++ +G + + P
Sbjct: 7 RSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPV- 65
Query: 288 EFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347
+ GD + GY + +S +Y +A ++ K L H
Sbjct: 66 ----TAQLPQTTAYGD---AYHGYWQQDIYSLNENYGTA----------DDLKALSSALH 108
Query: 348 KRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY------NYSGCGNTF 401
+RG+ +++DVV NH G D + VD SV+ + + F+ NY
Sbjct: 109 ERGMYLMVDVVANHM--GYDG----AGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVE 162
Query: 402 NC--------------NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN 447
+C VV+ D + V+ +DG R D + + W N
Sbjct: 163 DCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK--DFWPGYN 220
Query: 448 -VYGIPIEGDLLTTGTPLRSPP---LIDLISNDPI 478
G+ G++L G P + P ++D + N PI
Sbjct: 221 KAAGVYCIGEVL-DGDPAYTCPYQNVMDGVLNYPI 254
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYN-------------YSGCGNTFNCNH--PVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ Y G+ + NH V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLGDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324
GV +KL +LK LG+ + L P + + +++ G + GY T ++ +
Sbjct: 53 GVRQKLPYLKQLGVTTIWLSPVLD-------NLDTLAGTDNTGYHGYWTRDFKQIEEHFG 105
Query: 325 SAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV--EGND----KGPILSFRGVD 378
+ F LV +AH+ GI+V++D V NH+ + ND +G L G
Sbjct: 106 N----------WTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTY 155
Query: 379 NSVYYMLAPKGEFY 392
Y+ A KG F+
Sbjct: 156 MGNYFDDATKGYFH 169
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D+ M G S +VN Y
Sbjct: 228 MDVVKHMPFGWQKSFMAAVNNY 249
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 169 NDTQNLFHHYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S ++N Y
Sbjct: 228 VDAVKHMPFGWQKSFMATINNY 249
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 169 NDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S ++N Y
Sbjct: 228 VDAVKHMPFGWQKSFMATINNY 249
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 169 NDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S ++N Y
Sbjct: 228 VDAVKHMPFGWQKSFMATINNY 249
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 169 NDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S ++N Y
Sbjct: 228 VDAVKHMPFGWQKSFMATINNY 249
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 169 NDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S ++N Y
Sbjct: 228 VDAVKNMPFGWQKSFMATINNY 249
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 169 NDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S ++N Y
Sbjct: 228 VDAVKHMPFGWQKSFMATINNY 249
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCG----------NTF-----NCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G N F N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 335 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAPKG 389
+ +F+ L+ AH I+V++D NHT ++ P + G DN Y G
Sbjct: 115 SFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNG 174
Query: 390 EFYNYSGCG----------NTF-----NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 434
F++Y G N F N + + ++ ++ W+ +M +DG R D
Sbjct: 175 YFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLDAVK 233
Query: 435 IMTRG 439
M G
Sbjct: 234 HMPFG 238
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 335 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAPKG 389
+ +F+ L+ AH I+V++D NHT ++ P + G DN Y G
Sbjct: 115 SFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNG 174
Query: 390 EFYNYSGCG----------NTF-----NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 434
F++Y G N F N + + ++ ++ W+ +M +DG R D
Sbjct: 175 YFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLDAVK 233
Query: 435 IMTRG 439
M G
Sbjct: 234 HMPFG 238
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLWDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYN-------------YSGCGNTFNCNH--PVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ Y G + + NH V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSSYEDGIYRNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLLDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 25/143 (17%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY----- 382
N + I +F+ L+ AH + I+V++D NHT + P + G DN
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 383 --------------YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 428
+ G + N + N N+ V ++ D ++ W+ ++ +DG
Sbjct: 169 NDTQNLFHHNLGTDFSTTENGIYKNLYDLAD-LNHNNSTVDVYLKDAIKMWL-DLGIDGI 226
Query: 429 RFDLASIMTRG--SSLWDSVNVY 449
R D M G S +VN Y
Sbjct: 227 RMDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V+++ NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
+ M G S +VN Y
Sbjct: 228 MNAVKHMPFGWQKSFMAAVNNY 249
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 310 GYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN 366
GY +YF + Y G + E L++ AH GI+V+ DVV NH G+
Sbjct: 61 GYDPYDYFD-LGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGD 116
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++ NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 23/142 (16%)
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 384
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYT 168
Query: 385 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 430 FDLASIMTRG--SSLWDSVNVY 449
M G S +VN Y
Sbjct: 228 MAAVKHMPFGWQKSFMAAVNNY 249
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 63/243 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ Y+++ F + S + G G+ KL+++K+LG + + + P
Sbjct: 16 KEATFYQIYPASF---KDSNDDGWGDMKGIASKLEYIKELGADAIWISPF---------- 62
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
Y+S D GY NY +Y + +C L+ + HK G++ + D
Sbjct: 63 YDSPQDDM-----GYDIANYEKVWPTYGTN--EDCF--------ALIEKTHKLGMKFITD 107
Query: 357 VVFNHTVEGND--KGPILSFRGVDNSVYYMLAPKG------------------------- 389
+V NH ++ K S ++ PKG
Sbjct: 108 LVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFD 167
Query: 390 ----EFYNYSGCGNT--FNCNHPVVRQFIVD-CLRYWVTEMHVDGFRFDLASIMTRGSSL 442
EFY C N + R+ I + + YW+ + VDGFR D+ S+ ++ L
Sbjct: 168 EKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWL-DHGVDGFRIDVGSLYSKVVGL 226
Query: 443 WDS 445
D+
Sbjct: 227 PDA 229
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 63/243 (25%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ Y+++ F + S + G G+ KL+++K+LG + + + P
Sbjct: 16 KEATFYQIYPASF---KDSNDDGWGDMKGIASKLEYIKELGADAIWISPF---------- 62
Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
Y+S D GY NY +Y + +C L+ + HK G++ + D
Sbjct: 63 YDSPQDDM-----GYDIANYEKVWPTYGTN--EDCF--------ALIEKTHKLGMKFITD 107
Query: 357 VVFNHTVEGND--KGPILSFRGVDNSVYYMLAPKG------------------------- 389
+V NH ++ K S ++ PKG
Sbjct: 108 LVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFD 167
Query: 390 ----EFYNYSGCGNT--FNCNHPVVRQFIVD-CLRYWVTEMHVDGFRFDLASIMTRGSSL 442
EFY C N + R+ I + + YW+ + VDGFR D+ S+ ++ L
Sbjct: 168 EKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWL-DHGVDGFRIDVGSLYSKVVGL 226
Query: 443 WDS 445
D+
Sbjct: 227 PDA 229
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 33/229 (14%)
Query: 230 LPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF 289
LPL +R+ +Y F R E + GT+ +L + +G + + L P H
Sbjct: 220 LPLLV-ERERALYGAWYEFFPRSEGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPI 278
Query: 290 NELEYFSYNSVL---GDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAI-------NEF 339
N+ L GD W + G GHD+I ++F
Sbjct: 279 GTTHRKGRNNTLSATGDDVGVPW---------------AIGSPEGGHDSIHPALGTLDDF 323
Query: 340 KLLVREAHKRGIEVVMDVVFNHTVEGN--DKGPILSFRGVDNSVYYMLAPKGEFYNYSGC 397
V EA K G+E+ +D + + K P D ++ + P ++ +
Sbjct: 324 DHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPEWFHHRPDGTIAHAENPPKKYQDIYPI 383
Query: 398 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSV 446
F+ + + V LR+W+ + V FR D + T+ + W+ V
Sbjct: 384 A--FDADPDGLATETVRILRHWM-DHGVRIFRVD--NPHTKPVAFWERV 427
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 114 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 162
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 163 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 192
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G G+ +K+ + ++LG+ L LMP + E G Y V+ Y +N P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLFKCPE------GKSDGGYAVS--SYRDVN---PA 158
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 362
+ I + + ++ H+ GI V+D +FNHT
Sbjct: 159 LG------------TIGDLREVIAALHEAGISAVVDFIFNHT 188
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 231 PLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMP 285
P + Q+D++ Y +V F GT GV E++ +L++LG+ L L+P
Sbjct: 84 PGWFGQQDMLGYSAYVDRFA----------GTLRGVAERVPYLQELGVRYLHLLP 128
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325
+ +K+ D GI+ + + P + + G Y + GY ++F + Y
Sbjct: 30 IRQKIPEWYDAGISAIWIPPASK----------GMGGAYSM---GYDPYDFFD-LGEYDQ 75
Query: 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN 366
G + E ++ AH G++V+ D+V NH G+
Sbjct: 76 KGTVETRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGD 116
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325
++ LD++ LG L P E N+ +SY+ GY+ +++ Y S
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYH-----------GYAATDHYRIDPRYGS 197
Query: 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 361
+F L EA KRG+ ++ DVV +H
Sbjct: 198 N----------EDFVRLSTEARKRGMGLIQDVVLSH 223
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325
++ LD++ LG L P E N+ +SY+ GY+ +++ Y S
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYH-----------GYAATDHYRIDPRYGS 197
Query: 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 361
+F L EA KRG+ ++ DVV +H
Sbjct: 198 N----------EDFVRLSTEARKRGMGLIQDVVLSH 223
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325
++ LD++ LG L P E N+ +SY+ GY+ +++ Y S
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYH-----------GYAATDHYRIDPRYGS 197
Query: 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 361
+F L EA KRG+ ++ DVV +H
Sbjct: 198 N----------EDFVRLSTEARKRGMGLIQDVVLSH 223
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
GT GV E++ +L++LG+ L L+P + GD N G++ +Y
Sbjct: 103 GTLQGVAERVPYLQELGVRYLHLLPF----------LRARAGD---NDGGFAVSDYGQVE 149
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
S S +D + +REA GI + D V NHT +
Sbjct: 150 PSLGS-------NDDLVALTSRLREA---GISLCADFVLNHTAD 183
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325
++ LD++ LG L P E N+ +SY+ GY+ +++ Y S
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYH-----------GYAATDHYRIDPRYGS 197
Query: 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 361
+F L EA KRG ++ DVV +H
Sbjct: 198 N----------EDFVRLSTEARKRGXGLIQDVVLSH 223
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
GT GV E++ +L++LG+ L L+P + GD N G++ +Y
Sbjct: 103 GTLQGVAERVPYLQELGVRYLHLLPF----------LRARAGD---NDGGFAVSDYGQVE 149
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364
S S +D + +REA GI + D V NHT +
Sbjct: 150 PSLGS-------NDDLVALTSRLREA---GISLCADFVLNHTAD 183
>pdb|3O66|A Chain A, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
pdb|3O66|B Chain B, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
Length = 282
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 28/192 (14%)
Query: 72 SAELETAVIKKPQSQRFQVSKGYPTPFGATLRD--GGVN-FSIFSSNAVSATLCLITLSD 128
+ L+ A IK P+ +G+ F T D G N ++ + + L T+SD
Sbjct: 76 TGALKEAPIKDPKKAXIATQQGFKKKFDQTFFDSYGFANTYAFXVTKETAKKYHLETVSD 135
Query: 129 LQENKVTEEIALDS-FANKTGDVWHVFLKG---DFK-------------------DMLYG 165
L ++ + DS + N+ GD + F K DF D+ G
Sbjct: 136 LAKHSKDLRLGXDSSWXNRKGDGYEGFKKEYGFDFGTVRPXQIGLVYDALNTEKLDVALG 195
Query: 166 YKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPD-ENCWPQMACLVPTPEDE- 223
Y DG+ + + K PYA + ++ + P+ + ++ + T E +
Sbjct: 196 YSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEXQR 255
Query: 224 FDWEGDLPLKYP 235
++E D K P
Sbjct: 256 LNYEADGKGKEP 267
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVN--FWGYSTINYFSPMISYSSAG 327
+ + D G ++ P ++ E GD ++ +W Y +Y G
Sbjct: 23 MKDIHDAGYTAIQTSPINQVKE-------GNQGDKSMSNWYWLYQPTSY--------QIG 67
Query: 328 IRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 363
R G + EFK + A + GI+V++D V NHT
Sbjct: 68 NRYLGTE--QEFKEMCAAAEEYGIKVIVDAVINHTT 101
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIR 329
+ + D G ++ P ++ E + +G++ +W Y +Y G R
Sbjct: 23 MKDIHDAGYTAIQTSPINQVKEGN--KGDKSMGNW---YWLYQPTSY--------QIGNR 69
Query: 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 363
G + EFK + A + G++V++D V NHT
Sbjct: 70 YLGSEE--EFKEMCAAAEEYGVKVIVDAVINHTT 101
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 301 LGDYKVNFWGYSTIN----YFSPMISYSSAGIRNCGHDAIN------------EFKLLVR 344
GD N W + + Y SP++ S N G+D I+ E++ L+
Sbjct: 16 FGDVIDNLWYFXDLGVSHLYLSPVLMASPGS--NHGYDVIDHSRINDELGGEKEYRRLIE 73
Query: 345 EAHKRGIEVVMDVVFNH 361
AH G+ ++ D+V NH
Sbjct: 74 TAHTIGLGIIQDIVPNH 90
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVN--FWGYSTINYFSPMISYSSAG 327
+ + D G ++ P ++ E GD ++ +W Y +Y G
Sbjct: 26 MKDIHDAGYTAIQTSPINQVKE-------GNQGDKSMSNWYWLYQPTSY--------QIG 70
Query: 328 IRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 363
R G + EFK + A + GI+V++D V NHT
Sbjct: 71 NRYLGTE--QEFKEMCAAAEEYGIKVIVDAVINHTT 104
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 4 LQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTK 63
L F + + + ++S F +K S LK+ F +HPN+ +S AF+N
Sbjct: 90 LDFLNQSFIQQKANLLSSSNFEATKKSVLKQ--VQDFEDNDHPNRVLEHLHSTAFQNTPL 147
Query: 64 NLVIRASKSAELETAVIKKPQS 85
+L R + + LE V+ +S
Sbjct: 148 SLPTRGTLES-LENLVVADLES 168
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 4 LQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTK 63
L F + + + ++S F +K S LK+ F +HPN+ +S AF+N
Sbjct: 91 LDFLNQSFIQQKANLLSSSNFEATKKSVLKQ--VQDFEDNDHPNRVLEHLHSTAFQNTPL 148
Query: 64 NLVIRASKSAELETAVIKKPQS 85
+L R + + LE V+ +S
Sbjct: 149 SLPTRGTLES-LENLVVADLES 169
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
GT+ ++ L +K LG + + L+P ++L F Y V Y P+
Sbjct: 117 GTFFKMMLLLPFVKSLGADAIYLLPVSRMSDL--FKKGDAPSPYSVKNPMELDERYHDPL 174
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND 367
+ EFK V H GI V++D + +D
Sbjct: 175 LEPFKVD---------EEFKAFVEACHILGIRVILDFIPRTAARDSD 212
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 34/186 (18%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320
G++ G+++ LD+++ +G + + P E ++ G+ +W +
Sbjct: 40 GSWQGIIDHLDYIEGMGFTAIWISPI-----TEQLPQDTADGEAYHGYWQQKIYD----- 89
Query: 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH---TVEGNDKGPILSFRGV 377
N + K L H RG+ +++DVV +H GND + F
Sbjct: 90 --------VNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSV-FDPF 140
Query: 378 DNSVYY----MLAPKGEFYNYSGC--GNT------FNCNHPVVRQFIVDCLRYWVTEMHV 425
D+S Y+ ++ C G+T + VR D + V+ V
Sbjct: 141 DSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSV 200
Query: 426 DGFRFD 431
DG R D
Sbjct: 201 DGLRID 206
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 552 SINFVCAHD-GFSLADLVSYNQKHNLANGEDNND--GETHNNS----WNCGQEGEFANIL 604
++ F+ AH GF+ + SY N NG+D ND G +NN + N
Sbjct: 324 AVGFMLAHPYGFTRV-MSSYRWARNFVNGQDVNDWIGPPNNNGVIKEVTINADTTCGNDW 382
Query: 605 VKKLRRRQMRNFFLCLMVSQGVPMISMGD----EYGHTKGGNNNTYCHDNDVNLCTLLIS 660
V + R RQ+RN V G P + D + +G +++D L + L +
Sbjct: 383 VCEHRWRQIRNMVWFRNVVDGQPFANWWDNGSNQVAFGRGNRGFIVFNNDDWQLSSTLQT 442
Query: 661 G 661
G
Sbjct: 443 G 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,529,648
Number of Sequences: 62578
Number of extensions: 1061901
Number of successful extensions: 2510
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2164
Number of HSP's gapped (non-prelim): 262
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)