Query 005976
Match_columns 666
No_of_seqs 291 out of 2504
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03705 glycogen debranching 100.0 1E-100 3E-105 872.7 50.6 529 90-661 4-544 (658)
2 TIGR02100 glgX_debranch glycog 100.0 2.6E-98 6E-103 860.1 51.4 526 93-660 2-549 (688)
3 COG1523 PulA Type II secretory 100.0 8.4E-98 2E-102 840.5 39.9 536 88-658 10-567 (697)
4 PRK14510 putative bifunctional 100.0 1.7E-90 3.6E-95 834.6 49.5 529 88-661 6-552 (1221)
5 TIGR02104 pulA_typeI pullulana 100.0 1.5E-78 3.2E-83 694.5 41.2 472 93-660 7-509 (605)
6 TIGR02102 pullulan_Gpos pullul 100.0 1.4E-76 3.1E-81 697.5 43.4 486 93-661 314-870 (1111)
7 PLN02877 alpha-amylase/limit d 100.0 1.4E-75 3E-80 675.1 40.1 493 93-659 210-799 (970)
8 TIGR02103 pullul_strch alpha-1 100.0 5.7E-75 1.2E-79 672.6 38.1 511 71-661 100-732 (898)
9 KOG0470 1,4-alpha-glucan branc 100.0 4E-73 8.8E-78 622.5 32.8 513 95-661 102-622 (757)
10 TIGR02402 trehalose_TreZ malto 100.0 5.4E-66 1.2E-70 581.8 35.0 389 107-640 1-422 (542)
11 PRK12568 glycogen branching en 100.0 2E-60 4.3E-65 540.6 37.6 450 95-661 124-593 (730)
12 PRK12313 glycogen branching en 100.0 8.1E-60 1.8E-64 543.1 38.2 441 95-660 24-492 (633)
13 PRK14706 glycogen branching en 100.0 1.1E-59 2.3E-64 536.2 35.2 431 96-639 25-474 (639)
14 TIGR01515 branching_enzym alph 100.0 7.5E-60 1.6E-64 540.1 33.4 440 96-660 15-479 (613)
15 PRK05402 glycogen branching en 100.0 1.1E-59 2.4E-64 548.0 34.1 444 94-660 116-588 (726)
16 PRK14705 glycogen branching en 100.0 4.8E-58 1E-62 543.6 35.7 439 96-661 621-1089(1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 5.2E-55 1.1E-59 497.2 39.8 473 95-661 104-604 (758)
18 COG0296 GlgB 1,4-alpha-glucan 100.0 2.9E-55 6.3E-60 487.8 32.5 433 93-642 21-477 (628)
19 PRK10785 maltodextrin glucosid 100.0 3.1E-55 6.7E-60 500.7 32.0 413 96-641 11-490 (598)
20 PLN02960 alpha-amylase 100.0 6.4E-51 1.4E-55 462.7 38.7 350 147-561 323-681 (897)
21 PRK09505 malS alpha-amylase; R 100.0 1E-47 2.2E-52 438.4 24.5 329 232-640 183-607 (683)
22 PRK10933 trehalose-6-phosphate 100.0 3.9E-47 8.5E-52 429.5 24.5 331 235-640 7-371 (551)
23 TIGR02456 treS_nterm trehalose 100.0 2.4E-47 5.2E-52 432.4 21.8 336 235-639 2-379 (539)
24 TIGR02403 trehalose_treC alpha 100.0 3.2E-47 7E-52 430.6 21.9 331 236-640 2-365 (543)
25 PF00128 Alpha-amylase: Alpha 100.0 2E-46 4.3E-51 395.0 15.0 286 261-641 1-314 (316)
26 PRK09441 cytoplasmic alpha-amy 100.0 7.9E-43 1.7E-47 390.6 21.1 284 261-640 19-374 (479)
27 PLN00196 alpha-amylase; Provis 100.0 1.5E-39 3.2E-44 355.6 22.8 153 260-438 40-210 (428)
28 PLN02361 alpha-amylase 100.0 4E-38 8.7E-43 340.4 25.7 270 262-633 27-323 (401)
29 PLN02784 alpha-amylase 100.0 1.5E-35 3.3E-40 335.9 26.2 294 235-636 495-819 (894)
30 PRK13840 sucrose phosphorylase 100.0 9.9E-35 2.1E-39 319.1 21.2 320 237-639 2-386 (495)
31 TIGR03852 sucrose_gtfA sucrose 100.0 7.3E-35 1.6E-39 318.3 16.9 304 260-639 16-376 (470)
32 PLN03244 alpha-amylase; Provis 100.0 1.4E-32 3.1E-37 307.5 32.0 394 146-661 327-741 (872)
33 COG0366 AmyA Glycosidases [Car 100.0 3.9E-34 8.5E-39 322.8 15.5 174 239-438 1-205 (505)
34 KOG0471 Alpha-amylase [Carbohy 100.0 5.5E-32 1.2E-36 305.0 19.5 175 235-438 14-220 (545)
35 TIGR02455 TreS_stutzeri trehal 100.0 3.3E-28 7.1E-33 268.4 22.1 280 237-565 50-408 (688)
36 smart00642 Aamy Alpha-amylase 99.9 1.2E-22 2.5E-27 195.7 9.6 97 243-364 1-97 (166)
37 TIGR02401 trehalose_TreY malto 99.9 1.5E-21 3.2E-26 224.6 19.2 82 260-365 12-93 (825)
38 PF14872 GHL5: Hypothetical gl 99.9 4.6E-20 1E-24 200.3 22.1 290 96-436 26-393 (811)
39 KOG2212 Alpha-amylase [Carbohy 99.8 2.2E-18 4.7E-23 175.2 15.5 294 262-639 38-364 (504)
40 PRK14511 maltooligosyl trehalo 99.7 2.3E-17 4.9E-22 191.0 16.6 83 260-366 16-98 (879)
41 cd02852 Isoamylase_N_term Isoa 99.7 2.3E-17 5.1E-22 150.5 12.5 101 99-201 1-101 (119)
42 cd02856 Glycogen_debranching_e 99.7 9.6E-17 2.1E-21 142.6 12.2 97 97-201 1-97 (103)
43 cd02860 Pullulanase_N_term Pul 99.6 2.5E-15 5.5E-20 132.7 10.4 94 98-204 1-94 (100)
44 PRK14507 putative bifunctional 99.6 1.2E-15 2.6E-20 186.7 10.5 92 238-364 743-834 (1693)
45 PF02922 CBM_48: Carbohydrate- 99.4 4E-13 8.7E-18 114.8 8.1 81 97-191 1-85 (85)
46 TIGR01531 glyc_debranch glycog 99.4 9.4E-13 2E-17 157.0 9.0 88 260-368 128-216 (1464)
47 COG3280 TreY Maltooligosyl tre 99.4 6.2E-13 1.3E-17 147.8 6.6 80 262-365 17-96 (889)
48 cd02853 MTHase_N_term Maltooli 99.2 2.9E-11 6.2E-16 103.5 8.2 71 99-194 1-72 (85)
49 cd02854 Glycogen_branching_enz 99.1 3.1E-10 6.7E-15 99.8 8.8 79 103-197 3-88 (99)
50 cd02855 Glycogen_branching_enz 98.8 2.2E-08 4.8E-13 89.0 10.2 86 96-196 8-97 (106)
51 PF14701 hDGE_amylase: glucano 98.7 7.1E-08 1.5E-12 104.6 9.5 104 235-368 4-108 (423)
52 PF02638 DUF187: Glycosyl hydr 98.6 3E-07 6.5E-12 97.7 12.0 143 262-432 17-162 (311)
53 cd02858 Esterase_N_term Estera 98.6 2.5E-07 5.4E-12 79.2 8.5 69 104-195 5-74 (85)
54 PRK05402 glycogen branching en 98.4 4.5E-07 9.8E-12 107.0 7.3 80 96-194 19-98 (726)
55 PF14871 GHL6: Hypothetical gl 98.3 4.5E-06 9.8E-11 77.3 11.1 125 268-432 4-132 (132)
56 COG1649 Uncharacterized protei 98.2 7.2E-06 1.6E-10 88.9 9.9 147 262-436 62-211 (418)
57 cd02688 E_set E or "early" set 98.1 1.3E-05 2.9E-10 67.2 8.6 59 105-172 4-63 (83)
58 cd02861 E_set_proteins_like E 98.0 1.6E-05 3.5E-10 67.4 7.7 68 106-195 3-70 (82)
59 PF02324 Glyco_hydro_70: Glyco 97.7 0.00011 2.4E-09 82.6 7.9 112 236-363 562-673 (809)
60 cd06593 GH31_xylosidase_YicI Y 97.5 0.00074 1.6E-08 71.9 10.8 136 262-438 22-163 (308)
61 PF02065 Melibiase: Melibiase; 97.4 0.0018 3.8E-08 71.1 13.4 94 336-437 103-196 (394)
62 cd06592 GH31_glucosidase_KIAA1 97.4 0.0014 3E-08 69.7 12.2 91 339-435 72-166 (303)
63 KOG3625 Alpha amylase [Carbohy 97.2 0.00034 7.4E-09 80.3 5.2 90 260-368 138-228 (1521)
64 cd06597 GH31_transferase_CtsY 97.1 0.0013 2.8E-08 71.0 8.0 99 338-436 86-189 (340)
65 cd06594 GH31_glucosidase_YihQ 96.9 0.0019 4.2E-08 69.0 7.1 143 262-437 21-169 (317)
66 PF02324 Glyco_hydro_70: Glyco 96.9 0.0021 4.5E-08 72.6 7.1 141 398-562 143-298 (809)
67 cd06602 GH31_MGAM_SI_GAA This 96.6 0.0055 1.2E-07 66.2 8.1 95 340-435 69-166 (339)
68 cd06591 GH31_xylosidase_XylS X 96.6 0.0049 1.1E-07 66.0 7.5 90 339-434 68-159 (319)
69 PLN02635 disproportionating en 96.6 0.0072 1.6E-07 68.6 9.0 130 336-488 223-371 (538)
70 TIGR02401 trehalose_TreY malto 96.6 0.00082 1.8E-08 79.1 1.5 48 609-662 643-690 (825)
71 PF13200 DUF4015: Putative gly 96.3 0.034 7.5E-07 59.0 11.7 140 261-437 10-150 (316)
72 cd06600 GH31_MGAM-like This fa 96.3 0.01 2.2E-07 63.5 7.8 93 338-434 65-160 (317)
73 cd06599 GH31_glycosidase_Aec37 96.3 0.0084 1.8E-07 64.1 7.2 91 338-434 74-168 (317)
74 PRK14582 pgaB outer membrane N 96.3 0.036 7.8E-07 64.5 12.3 138 262-436 332-470 (671)
75 PF13199 Glyco_hydro_66: Glyco 96.0 0.071 1.5E-06 60.9 12.8 147 262-436 116-270 (559)
76 PRK10426 alpha-glucosidase; Pr 95.9 0.044 9.4E-07 64.1 11.1 95 338-438 270-367 (635)
77 PRK14508 4-alpha-glucanotransf 95.9 0.061 1.3E-06 60.9 11.7 134 336-488 197-345 (497)
78 PRK10658 putative alpha-glucos 95.8 0.017 3.8E-07 67.6 7.2 94 338-438 326-422 (665)
79 PRK14511 maltooligosyl trehalo 95.8 0.0058 1.2E-07 72.6 3.0 37 401-437 270-306 (879)
80 PF01055 Glyco_hydro_31: Glyco 95.8 0.012 2.5E-07 66.0 5.2 96 338-436 84-182 (441)
81 cd02859 AMPKbeta_GBD_like AMP- 95.7 0.031 6.8E-07 47.0 6.5 55 106-171 3-57 (79)
82 cd06604 GH31_glucosidase_II_Ma 95.6 0.027 5.9E-07 60.9 7.3 92 339-435 66-160 (339)
83 cd06598 GH31_transferase_CtsZ 95.4 0.035 7.7E-07 59.4 7.0 89 339-434 72-164 (317)
84 cd06603 GH31_GANC_GANAB_alpha 94.7 0.074 1.6E-06 57.5 7.2 93 338-434 65-162 (339)
85 cd06595 GH31_xylosidase_XylS-l 94.1 0.099 2.1E-06 55.3 6.3 85 338-434 75-159 (292)
86 TIGR00217 malQ 4-alpha-glucano 93.8 0.22 4.8E-06 56.7 8.9 131 336-488 211-360 (513)
87 COG1501 Alpha-glucosidases, fa 93.6 0.13 2.9E-06 61.1 6.9 92 339-437 323-418 (772)
88 PRK14510 putative bifunctional 93.4 0.2 4.4E-06 62.8 8.2 33 258-290 740-772 (1221)
89 PF00150 Cellulase: Cellulase 93.3 0.12 2.7E-06 53.4 5.4 63 265-360 22-85 (281)
90 PLN02763 hydrolase, hydrolyzin 93.3 0.22 4.7E-06 60.3 8.0 91 339-434 243-336 (978)
91 cd06542 GH18_EndoS-like Endo-b 93.2 0.3 6.5E-06 50.4 8.0 63 336-432 50-112 (255)
92 PRK11052 malQ 4-alpha-glucanot 92.8 0.61 1.3E-05 55.0 10.6 31 258-288 159-189 (695)
93 cd06563 GH20_chitobiase-like T 92.2 1.3 2.8E-05 48.2 11.6 81 335-425 84-166 (357)
94 cd06562 GH20_HexA_HexB-like Be 92.1 0.97 2.1E-05 49.1 10.4 82 335-425 68-150 (348)
95 KOG1065 Maltase glucoamylase a 91.6 0.86 1.9E-05 53.6 9.7 92 339-434 353-448 (805)
96 PLN03244 alpha-amylase; Provis 91.2 0.45 9.7E-06 55.9 6.9 62 93-158 118-181 (872)
97 PF05913 DUF871: Bacterial pro 91.0 0.26 5.6E-06 53.5 4.6 61 262-362 12-72 (357)
98 PLN02950 4-alpha-glucanotransf 90.8 5.3 0.00012 48.7 15.7 57 259-325 278-334 (909)
99 PF02449 Glyco_hydro_42: Beta- 90.5 1.1 2.4E-05 49.0 9.1 123 264-432 10-136 (374)
100 cd02857 CD_pullulan_degrading_ 90.3 1.1 2.4E-05 39.8 7.4 67 96-169 11-80 (116)
101 cd06601 GH31_lyase_GLase GLase 90.2 0.76 1.6E-05 49.5 7.2 68 339-434 66-133 (332)
102 cd02875 GH18_chitobiase Chitob 90.0 0.65 1.4E-05 50.6 6.6 54 340-432 67-120 (358)
103 cd06565 GH20_GcnA-like Glycosy 89.9 2.5 5.5E-05 44.9 10.8 113 262-424 15-131 (301)
104 cd06564 GH20_DspB_LnbB-like Gl 89.9 1.7 3.8E-05 46.6 9.7 81 335-430 80-163 (326)
105 PF02446 Glyco_hydro_77: 4-alp 89.0 0.23 4.9E-06 56.6 2.2 26 336-361 191-216 (496)
106 PF14488 DUF4434: Domain of un 88.8 1.4 3E-05 42.6 7.2 71 263-361 19-89 (166)
107 cd06568 GH20_SpHex_like A subg 88.8 3.1 6.6E-05 44.8 10.6 80 335-423 73-153 (329)
108 cd02871 GH18_chitinase_D-like 88.7 1.7 3.6E-05 46.5 8.4 61 336-433 59-119 (312)
109 COG1640 MalQ 4-alpha-glucanotr 88.6 2.4 5.1E-05 48.1 9.8 90 336-437 209-309 (520)
110 COG3589 Uncharacterized conser 88.5 0.59 1.3E-05 49.4 4.7 27 336-362 48-74 (360)
111 PRK14507 putative bifunctional 88.2 1.1 2.4E-05 57.3 7.6 29 259-287 189-217 (1693)
112 cd02742 GH20_hexosaminidase Be 88.0 2.8 6E-05 44.6 9.5 77 335-423 70-147 (303)
113 PF07745 Glyco_hydro_53: Glyco 88.0 1.7 3.8E-05 46.6 7.9 99 267-426 27-125 (332)
114 cd06545 GH18_3CO4_chitinase Th 87.6 1.7 3.7E-05 44.8 7.5 63 336-432 45-107 (253)
115 cd06589 GH31 The enzymes of gl 86.3 1.2 2.6E-05 46.4 5.5 51 339-436 68-118 (265)
116 COG1523 PulA Type II secretory 85.4 2.8 6.2E-05 49.3 8.5 87 93-198 62-155 (697)
117 PF14883 GHL13: Hypothetical g 85.3 9.6 0.00021 39.9 11.3 121 268-430 21-142 (294)
118 PF00728 Glyco_hydro_20: Glyco 83.6 1.7 3.7E-05 46.9 5.4 86 335-430 71-162 (351)
119 PRK12568 glycogen branching en 81.7 3.3 7.3E-05 49.0 7.1 76 97-194 29-105 (730)
120 cd06570 GH20_chitobiase-like_1 80.7 13 0.00029 39.6 10.7 80 335-424 66-147 (311)
121 PF02903 Alpha-amylase_N: Alph 80.6 5.5 0.00012 36.1 6.8 68 103-170 19-89 (120)
122 PF01301 Glyco_hydro_35: Glyco 80.4 1.9 4.1E-05 46.2 4.2 62 264-359 24-85 (319)
123 PF10566 Glyco_hydro_97: Glyco 77.8 13 0.00028 38.9 9.2 65 260-357 28-93 (273)
124 PF13204 DUF4038: Protein of u 77.3 5.2 0.00011 42.3 6.3 77 263-361 29-110 (289)
125 TIGR03849 arch_ComA phosphosul 75.4 5.9 0.00013 40.4 5.8 22 336-357 99-120 (237)
126 COG2730 BglC Endoglucanase [Ca 75.1 5.2 0.00011 44.4 5.9 60 267-357 76-136 (407)
127 cd02874 GH18_CFLE_spore_hydrol 73.0 5.4 0.00012 42.4 5.2 66 339-433 47-112 (313)
128 PF02679 ComA: (2R)-phospho-3- 72.8 6.9 0.00015 40.2 5.6 55 260-358 73-134 (244)
129 PRK10076 pyruvate formate lyas 71.1 25 0.00055 35.3 9.2 82 239-355 130-211 (213)
130 cd06569 GH20_Sm-chitobiase-lik 69.7 16 0.00034 41.1 8.1 155 262-421 20-191 (445)
131 PRK14508 4-alpha-glucanotransf 69.6 5 0.00011 45.7 4.2 51 260-325 22-73 (497)
132 PF01120 Alpha_L_fucos: Alpha- 68.6 39 0.00085 36.6 10.7 122 268-435 95-217 (346)
133 COG3867 Arabinogalactan endo-1 68.1 15 0.00032 38.6 6.7 62 268-361 67-128 (403)
134 COG3345 GalA Alpha-galactosida 65.2 10 0.00022 42.9 5.2 142 262-438 307-448 (687)
135 PF07071 DUF1341: Protein of u 64.8 14 0.00031 36.5 5.6 44 266-353 137-180 (218)
136 cd00598 GH18_chitinase-like Th 64.5 25 0.00054 34.5 7.7 30 404-433 84-113 (210)
137 COG1306 Uncharacterized conser 62.8 42 0.00091 35.3 8.8 141 264-437 77-222 (400)
138 PRK15452 putative protease; Pr 62.4 48 0.001 37.2 10.1 20 336-355 45-64 (443)
139 PF03198 Glyco_hydro_72: Gluca 61.9 9.3 0.0002 40.5 4.1 53 265-364 54-106 (314)
140 TIGR01531 glyc_debranch glycog 59.5 32 0.00068 43.7 8.5 60 404-492 487-546 (1464)
141 TIGR03356 BGL beta-galactosida 58.5 18 0.00038 40.5 5.8 66 260-358 50-115 (427)
142 PRK05628 coproporphyrinogen II 57.5 40 0.00086 36.9 8.3 63 267-363 108-171 (375)
143 TIGR01211 ELP3 histone acetylt 57.4 42 0.00092 38.5 8.7 62 267-362 206-267 (522)
144 PLN03059 beta-galactosidase; P 56.7 20 0.00043 43.1 6.1 65 265-363 60-124 (840)
145 cd06546 GH18_CTS3_chitinase GH 56.2 58 0.0013 33.7 8.9 28 405-432 93-120 (256)
146 PF02446 Glyco_hydro_77: 4-alp 55.4 14 0.0003 42.2 4.4 53 259-325 13-66 (496)
147 PF13380 CoA_binding_2: CoA bi 54.5 16 0.00036 32.9 3.9 22 264-285 66-87 (116)
148 TIGR00539 hemN_rel putative ox 54.0 51 0.0011 35.8 8.4 63 267-363 100-163 (360)
149 cd02877 GH18_hevamine_XipI_cla 53.9 38 0.00082 35.6 7.1 20 337-356 59-78 (280)
150 PLN03236 4-alpha-glucanotransf 53.1 22 0.00048 42.3 5.6 57 259-325 78-134 (745)
151 PRK08207 coproporphyrinogen II 52.7 58 0.0013 37.1 8.8 62 267-362 269-331 (488)
152 smart00812 Alpha_L_fucos Alpha 52.5 1.2E+02 0.0026 33.4 11.0 115 268-433 85-202 (384)
153 cd06547 GH85_ENGase Endo-beta- 52.2 13 0.00027 40.3 3.3 64 341-434 50-113 (339)
154 KOG2499 Beta-N-acetylhexosamin 51.9 1E+02 0.0022 34.8 9.9 76 336-423 249-325 (542)
155 TIGR01370 cysRS possible cyste 51.8 38 0.00083 36.2 6.7 38 399-437 136-173 (315)
156 PRK13210 putative L-xylulose 5 51.6 1.4E+02 0.0031 30.7 11.1 54 265-355 17-70 (284)
157 TIGR03581 EF_0839 conserved hy 51.5 25 0.00055 35.2 4.9 22 266-287 137-158 (236)
158 PRK11052 malQ 4-alpha-glucanot 51.2 24 0.00053 41.9 5.6 49 260-325 164-215 (695)
159 PRK14705 glycogen branching en 50.1 40 0.00086 42.6 7.4 76 97-193 522-600 (1224)
160 PRK14581 hmsF outer membrane N 50.0 1.4E+02 0.0031 35.4 11.5 127 268-432 338-466 (672)
161 KOG0496 Beta-galactosidase [Ca 49.6 78 0.0017 36.9 9.0 65 266-364 51-115 (649)
162 TIGR00433 bioB biotin syntheta 48.8 93 0.002 32.5 9.2 60 267-361 123-182 (296)
163 PRK08208 coproporphyrinogen II 48.3 64 0.0014 36.1 8.2 63 267-363 141-204 (430)
164 PTZ00445 p36-lilke protein; Pr 46.3 46 0.001 33.5 5.9 20 336-355 77-96 (219)
165 PRK11194 ribosomal RNA large s 45.2 98 0.0021 34.0 8.8 70 238-355 262-331 (372)
166 PRK05660 HemN family oxidoredu 44.4 85 0.0018 34.4 8.3 62 268-363 108-170 (378)
167 COG1242 Predicted Fe-S oxidore 44.4 73 0.0016 33.4 7.0 58 336-437 167-224 (312)
168 PRK14462 ribosomal RNA large s 43.5 1E+02 0.0022 33.6 8.6 72 237-356 262-333 (356)
169 smart00518 AP2Ec AP endonuclea 43.5 2.3E+02 0.005 29.0 11.1 53 265-355 11-63 (273)
170 PLN02635 disproportionating en 42.7 31 0.00067 39.7 4.6 56 259-325 44-100 (538)
171 PLN03236 4-alpha-glucanotransf 42.5 38 0.00083 40.4 5.4 27 336-362 273-299 (745)
172 PRK14457 ribosomal RNA large s 42.4 1.1E+02 0.0023 33.4 8.5 69 239-355 256-324 (345)
173 PRK01060 endonuclease IV; Prov 41.0 57 0.0012 33.7 6.1 53 263-353 11-63 (281)
174 PRK09058 coproporphyrinogen II 40.2 1.5E+02 0.0033 33.3 9.7 63 267-363 163-226 (449)
175 PRK13347 coproporphyrinogen II 40.0 1.1E+02 0.0024 34.4 8.5 62 267-362 152-214 (453)
176 PRK09249 coproporphyrinogen II 39.3 1.2E+02 0.0026 34.1 8.7 63 267-363 151-214 (453)
177 PRK08446 coproporphyrinogen II 38.8 1.4E+02 0.003 32.4 8.8 62 267-362 98-160 (350)
178 PRK11145 pflA pyruvate formate 37.8 1.3E+02 0.0029 30.4 8.1 82 238-354 163-245 (246)
179 PLN02950 4-alpha-glucanotransf 37.7 47 0.001 40.8 5.3 59 107-169 155-218 (909)
180 TIGR03470 HpnH hopanoid biosyn 37.6 1.2E+02 0.0027 32.3 8.0 37 242-279 127-164 (318)
181 PRK09856 fructoselysine 3-epim 37.6 69 0.0015 33.0 6.0 20 265-284 14-33 (275)
182 PF01212 Beta_elim_lyase: Beta 37.5 30 0.00064 36.6 3.3 23 336-358 144-166 (290)
183 PF08821 CGGC: CGGC domain; I 36.3 1.1E+02 0.0024 27.2 6.2 27 263-289 51-77 (107)
184 cd06543 GH18_PF-ChiA-like PF-C 35.8 1E+02 0.0022 32.7 6.9 61 336-433 53-113 (294)
185 TIGR00542 hxl6Piso_put hexulos 35.6 61 0.0013 33.6 5.3 54 264-354 16-69 (279)
186 TIGR00538 hemN oxygen-independ 35.4 1.4E+02 0.003 33.7 8.4 63 267-363 151-214 (455)
187 PRK14467 ribosomal RNA large s 35.1 1.7E+02 0.0037 31.8 8.6 72 238-356 252-324 (348)
188 PRK09936 hypothetical protein; 34.3 1.4E+02 0.0031 31.5 7.4 59 263-360 37-95 (296)
189 cd04823 ALAD_PBGS_aspartate_ri 34.2 2.4E+02 0.0051 30.2 9.1 51 238-288 24-78 (320)
190 PRK13384 delta-aminolevulinic 34.0 2.4E+02 0.0051 30.2 9.0 128 238-428 31-164 (322)
191 PRK14453 chloramphenicol/florf 33.9 2.1E+02 0.0045 31.1 9.1 73 238-355 248-324 (347)
192 PRK04302 triosephosphate isome 33.1 79 0.0017 31.8 5.4 22 336-357 100-121 (223)
193 COG1809 (2R)-phospho-3-sulfola 32.9 77 0.0017 32.0 5.0 21 336-356 118-138 (258)
194 TIGR01210 conserved hypothetic 32.6 70 0.0015 34.2 5.2 26 336-361 154-179 (313)
195 PRK05904 coproporphyrinogen II 31.7 71 0.0015 34.7 5.1 64 267-364 103-167 (353)
196 PRK15447 putative protease; Pr 31.7 1.1E+02 0.0025 32.3 6.6 20 336-355 47-66 (301)
197 PRK00278 trpC indole-3-glycero 30.9 1E+02 0.0022 32.0 5.8 23 336-358 146-168 (260)
198 cd00384 ALAD_PBGS Porphobilino 30.7 3.3E+02 0.0071 29.1 9.4 50 238-287 21-74 (314)
199 PF01373 Glyco_hydro_14: Glyco 30.7 85 0.0018 34.6 5.4 68 260-363 12-79 (402)
200 cd00958 DhnA Class I fructose- 30.6 84 0.0018 31.7 5.2 58 262-359 74-131 (235)
201 PF00218 IGPS: Indole-3-glycer 30.2 1.1E+02 0.0025 31.6 6.0 22 336-357 144-165 (254)
202 cd06548 GH18_chitinase The GH1 30.2 58 0.0013 34.8 4.1 29 404-432 105-133 (322)
203 cd05816 CBM20_DPE2_repeat2 Dis 30.0 1.6E+02 0.0035 25.5 6.2 59 107-169 2-65 (99)
204 COG4943 Predicted signal trans 29.8 69 0.0015 36.0 4.5 24 336-359 457-480 (524)
205 PLN02161 beta-amylase 29.7 3.7E+02 0.008 30.7 10.1 66 261-362 114-179 (531)
206 cd04724 Tryptophan_synthase_al 29.3 1.1E+02 0.0024 31.3 5.8 26 336-361 115-140 (242)
207 cd04824 eu_ALAD_PBGS_cysteine_ 28.9 3.1E+02 0.0068 29.2 8.9 50 238-287 21-74 (320)
208 PRK14455 ribosomal RNA large s 28.9 2.1E+02 0.0046 31.1 8.2 70 238-355 262-331 (356)
209 PRK07094 biotin synthase; Prov 28.6 83 0.0018 33.5 5.0 28 336-363 164-191 (323)
210 cd03412 CbiK_N Anaerobic cobal 28.5 1.2E+02 0.0026 27.8 5.2 30 263-292 55-84 (127)
211 PRK09283 delta-aminolevulinic 28.1 3.4E+02 0.0075 29.0 9.1 49 238-286 29-81 (323)
212 KOG0259 Tyrosine aminotransfer 28.1 70 0.0015 35.0 4.1 29 336-364 218-246 (447)
213 cd02876 GH18_SI-CLP Stabilin-1 27.9 65 0.0014 34.3 4.0 29 404-432 88-116 (318)
214 PF01791 DeoC: DeoC/LacD famil 27.9 48 0.001 33.7 2.8 59 267-362 79-137 (236)
215 PF04914 DltD_C: DltD C-termin 27.8 1.2E+02 0.0025 28.1 5.1 56 336-425 35-90 (130)
216 smart00636 Glyco_18 Glycosyl h 27.8 66 0.0014 34.3 4.0 29 404-432 87-115 (334)
217 PF03644 Glyco_hydro_85: Glyco 27.5 91 0.002 33.3 4.9 21 340-360 45-65 (311)
218 cd02803 OYE_like_FMN_family Ol 27.4 3E+02 0.0064 29.2 9.0 65 269-360 146-218 (327)
219 PRK13361 molybdenum cofactor b 27.3 1.3E+02 0.0029 32.1 6.2 52 260-354 136-187 (329)
220 PRK09852 cryptic 6-phospho-bet 27.3 1.2E+02 0.0026 34.4 6.1 69 260-362 67-135 (474)
221 cd02879 GH18_plant_chitinase_c 27.1 64 0.0014 34.1 3.7 28 404-431 88-115 (299)
222 PRK07379 coproporphyrinogen II 26.4 96 0.0021 34.3 5.1 64 267-364 115-179 (400)
223 PRK08599 coproporphyrinogen II 26.2 98 0.0021 33.8 5.1 64 267-364 100-164 (377)
224 cd06549 GH18_trifunctional GH1 26.2 69 0.0015 33.8 3.7 31 403-433 83-113 (298)
225 cd02872 GH18_chitolectin_chito 26.1 67 0.0015 34.7 3.8 29 404-432 92-120 (362)
226 PF15640 Tox-MPTase4: Metallop 25.7 67 0.0015 29.3 2.9 24 333-356 18-41 (132)
227 PF07555 NAGidase: beta-N-acet 25.4 5E+02 0.011 27.7 10.0 97 263-430 14-110 (306)
228 PF13407 Peripla_BP_4: Peripla 25.4 93 0.002 31.2 4.5 47 261-355 39-85 (257)
229 PLN02803 beta-amylase 25.4 2.8E+02 0.006 31.8 8.2 84 238-364 85-171 (548)
230 PRK06256 biotin synthase; Vali 25.0 91 0.002 33.4 4.5 26 336-361 186-211 (336)
231 PF00704 Glyco_hydro_18: Glyco 24.9 76 0.0016 33.7 3.8 30 405-434 96-125 (343)
232 cd05814 CBM20_Prei4 Prei4, N-t 24.6 1.7E+02 0.0038 26.3 5.6 62 106-169 2-67 (120)
233 PRK06294 coproporphyrinogen II 24.5 1.2E+02 0.0026 33.2 5.3 64 267-364 103-167 (370)
234 TIGR03569 NeuB_NnaB N-acetylne 24.5 1.3E+02 0.0029 32.4 5.5 85 258-356 10-95 (329)
235 PRK14468 ribosomal RNA large s 23.9 3.5E+02 0.0075 29.3 8.6 69 239-355 247-315 (343)
236 PLN02411 12-oxophytodienoate r 23.9 3.9E+02 0.0084 29.5 9.2 28 336-365 86-113 (391)
237 cd02803 OYE_like_FMN_family Ol 23.8 1.5E+02 0.0033 31.4 5.9 28 336-365 76-103 (327)
238 TIGR00048 radical SAM enzyme, 23.4 3.2E+02 0.0069 29.8 8.3 20 336-355 308-327 (355)
239 PF01261 AP_endonuc_2: Xylose 23.3 79 0.0017 30.5 3.3 45 270-355 1-45 (213)
240 PF00490 ALAD: Delta-aminolevu 23.2 2.1E+02 0.0045 30.7 6.4 133 238-429 27-165 (324)
241 PRK12928 lipoyl synthase; Prov 23.1 2.1E+02 0.0045 30.3 6.6 61 261-355 216-276 (290)
242 PLN02808 alpha-galactosidase 23.0 1E+02 0.0022 34.0 4.3 20 336-355 96-115 (386)
243 TIGR03565 alk_sulf_monoox alka 22.9 83 0.0018 34.0 3.7 28 258-285 301-328 (346)
244 TIGR03471 HpnJ hopanoid biosyn 22.9 1.4E+02 0.003 33.7 5.6 27 336-362 322-348 (472)
245 PRK09989 hypothetical protein; 22.6 1.5E+02 0.0033 30.2 5.5 20 265-284 16-35 (258)
246 PRK13957 indole-3-glycerol-pho 22.3 1.7E+02 0.0036 30.2 5.5 22 336-357 137-158 (247)
247 COG0134 TrpC Indole-3-glycerol 22.3 91 0.002 32.3 3.6 22 336-357 142-163 (254)
248 COG1874 LacA Beta-galactosidas 22.0 1.4E+02 0.0031 35.3 5.5 61 264-359 30-90 (673)
249 COG0826 Collagenase and relate 21.9 2.2E+02 0.0048 30.9 6.6 20 336-355 48-67 (347)
250 PRK14463 ribosomal RNA large s 21.8 3.9E+02 0.0084 29.0 8.5 71 238-356 250-320 (349)
251 PRK15014 6-phospho-beta-glucos 21.7 1.9E+02 0.0042 32.8 6.4 66 261-358 66-131 (477)
252 COG1891 Uncharacterized protei 21.6 43 0.00093 32.5 0.9 22 336-357 166-187 (235)
253 TIGR01496 DHPS dihydropteroate 21.5 3E+02 0.0064 28.5 7.3 40 241-285 5-44 (257)
254 COG0113 HemB Delta-aminolevuli 21.5 1E+03 0.022 25.5 11.9 52 238-289 31-86 (330)
255 cd08580 GDPD_Rv2277c_like Glyc 21.5 1.9E+02 0.0042 30.0 5.9 19 340-358 219-238 (263)
256 PRK13523 NADPH dehydrogenase N 21.4 5E+02 0.011 28.0 9.3 28 336-365 80-107 (337)
257 TIGR02494 PFLE_PFLC glycyl-rad 21.3 3E+02 0.0065 28.7 7.5 29 263-291 231-261 (295)
258 PF12683 DUF3798: Protein of u 21.3 1.4E+02 0.0031 31.0 4.7 57 336-430 149-205 (275)
259 PRK13209 L-xylulose 5-phosphat 21.2 1.7E+02 0.0037 30.2 5.5 54 265-355 22-75 (283)
260 PF14701 hDGE_amylase: glucano 21.2 1.4E+02 0.0029 33.4 4.8 32 404-437 374-405 (423)
261 PF07488 Glyco_hydro_67M: Glyc 21.1 2.7E+02 0.0059 29.7 6.7 102 263-432 56-158 (328)
262 PLN02801 beta-amylase 20.9 2.5E+02 0.0053 32.0 6.7 67 262-364 35-101 (517)
263 COG0041 PurE Phosphoribosylcar 20.7 1.1E+02 0.0023 29.2 3.3 23 335-357 42-64 (162)
264 PRK13511 6-phospho-beta-galact 20.7 2E+02 0.0043 32.6 6.2 66 260-358 50-115 (469)
265 cd00019 AP2Ec AP endonuclease 20.6 2.4E+02 0.0052 29.1 6.5 22 264-285 10-31 (279)
266 PRK09057 coproporphyrinogen II 20.3 1.4E+02 0.003 32.7 4.8 63 268-364 105-167 (380)
267 PRK12858 tagatose 1,6-diphosph 20.2 1.1E+02 0.0023 33.3 3.7 68 336-436 142-211 (340)
268 COG0520 csdA Selenocysteine ly 20.2 81 0.0017 35.0 2.9 29 334-362 176-206 (405)
269 PRK06582 coproporphyrinogen II 20.1 1.7E+02 0.0037 32.3 5.4 65 267-365 111-175 (390)
270 PF07894 DUF1669: Protein of u 20.1 77 0.0017 33.3 2.5 24 336-360 136-159 (284)
271 cd00609 AAT_like Aspartate ami 20.0 96 0.0021 32.5 3.4 27 336-362 151-177 (350)
No 1
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.4e-100 Score=872.66 Aligned_cols=529 Identities=42% Similarity=0.768 Sum_probs=455.7
Q ss_pred ccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEc
Q 005976 90 VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (666)
Q Consensus 90 ~~~g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~ 169 (666)
+..|.+.||||++.++||+|+||||+|++|+|+||+..+ . ..+++|. .+++|||+++|+++..+.+|+|+|+
T Consensus 4 ~~~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~gvW~~~v~~~~~G~~Y~yrv~ 75 (658)
T PRK03705 4 LAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENG----Q-EQRYDLP---ARSGDIWHGYLPGARPGLRYGYRVH 75 (658)
T ss_pred cCCCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCC----C-eeeEeee---eccCCEEEEEECCCCCCCEEEEEEc
Confidence 457899999999999999999999999999999997532 1 2356663 4568999999999999999999999
Q ss_pred CccCCCCCccccCcceecCccceeeeeccccCCc------CCC--CCCCCcceeccCCCCCCCCCCCCCCCCCCCCCeEE
Q 005976 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL------GPD--ENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLII 241 (666)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~------~~~--~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~~~~vI 241 (666)
|.+.++.|+++++.++++||||+++..+..++.. .+. .+..-...++|.+ ..|+|+++.++..+++++||
T Consensus 76 g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~W~~~~~p~~~~~~~vI 153 (658)
T PRK03705 76 GPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD--DHYDWEDDAPPRTPWGSTVI 153 (658)
T ss_pred cccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec--CCCCCCCCCCCCCCccccEE
Confidence 9888889999999999999999999754322111 000 0000012334433 46999988888889999999
Q ss_pred EEEEeCCcccC-CCCCCCCCcchhhhhh--hhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC
Q 005976 242 YEVHVRGFTRH-ESSKTEHPGTYLGVVE--KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (666)
Q Consensus 242 Yei~v~~f~~~-~~~~~~~~G~~~gi~~--~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~ 318 (666)
||+|||+|+.. .+++...+|||+++++ +|+|||+||||+||||||+++.+..... .....++|||+|.+||+
T Consensus 154 YE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~-----~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 154 YEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQ-----RMGLSNYWGYNPLAMFA 228 (658)
T ss_pred EEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCccccc-----ccccccccCcccccccc
Confidence 99999999974 4445567999999997 4999999999999999999986421110 01123679999999999
Q ss_pred cCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCC
Q 005976 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCG 398 (666)
Q Consensus 319 ~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~ 398 (666)
|+++||+.+. .+++|||+||++||++||+||||||+||++..+..++.+.+++.++..||+.++.|.+.+|++|+
T Consensus 229 ~d~~ygt~~~-----~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g 303 (658)
T PRK03705 229 LDPAYASGPE-----TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCG 303 (658)
T ss_pred cccccCCCCc-----chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCcc
Confidence 9999999542 35899999999999999999999999999987666677788888889999988888999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCC
Q 005976 399 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPI 478 (666)
Q Consensus 399 ~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ 478 (666)
++||+++|+||++|+++++||+++|||||||||+|.+|.+...||.. .+++++|+.+|+
T Consensus 304 ~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~---------------------~~~~~ai~~d~v 362 (658)
T PRK03705 304 NTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQD---------------------APLFTAIQNDPV 362 (658)
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchh---------------------hHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999876556543 346888998999
Q ss_pred CCCceEEEeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEecc
Q 005976 479 LRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 557 (666)
Q Consensus 479 ~~~~~liaE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~ 557 (666)
+++++||||.|+.+ +.++.+.++. .+++||+.|++.+|.|+.+.++..+.++..+.++..+|......|.++||||+
T Consensus 363 l~~~~ligE~Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~ 440 (658)
T PRK03705 363 LSQVKLIAEPWDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVT 440 (658)
T ss_pred ccceEEEEecccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEE
Confidence 99999999999987 5677887763 68999999999999999988888899999999998888766678999999999
Q ss_pred cCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccC
Q 005976 558 AHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 637 (666)
Q Consensus 558 nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~ 637 (666)
+||++||.|+++|+.|+|+++|+.++||+++|+|||||.||++....+..+|.+++|+++++||++|||||||||||+|+
T Consensus 441 ~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~gr 520 (658)
T PRK03705 441 AHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGH 520 (658)
T ss_pred eCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhcc
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccc
Q 005976 638 TKGGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 638 t~~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
||.||+|+||+++++||+||...+
T Consensus 521 tq~G~nN~y~~~~~i~~~dW~~~~ 544 (658)
T PRK03705 521 SQHGNNNAYCQDNALTWLDWSQAD 544 (658)
T ss_pred CCCCCCCCccCCCCccccccchhh
Confidence 999999999999999999998653
No 2
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=2.6e-98 Score=860.11 Aligned_cols=526 Identities=47% Similarity=0.873 Sum_probs=447.3
Q ss_pred CCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCcc
Q 005976 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (666)
Q Consensus 93 g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~ 172 (666)
|.+.||||++.++||+|+||||+|++|+|+||+..+ ..+..+++|. .+++|||+++|+++..+.+|+|+|+|.+
T Consensus 2 g~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~---~~~~~~~~m~---~~~~gvW~~~v~~~~~g~~Y~yrv~g~~ 75 (688)
T TIGR02100 2 GMPFPLGATWDGQGVNFALFSANAEKVELCLFDAQG---EKEEARLPLP---ERTDDIWHGYLPGAQPGQLYGYRVHGPY 75 (688)
T ss_pred CCCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCC---CceeeEEecc---cCCCCEEEEEECCCCCCCEEEEEEeeee
Confidence 788999999999999999999999999999997422 1233456764 4578999999999999999999999988
Q ss_pred CCCCCccccCcceecCccceeeeeccccCCc-------CCC--------CCCCCcceeccCCCCCCCCCCCC-CCCCCCC
Q 005976 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVL-------GPD--------ENCWPQMACLVPTPEDEFDWEGD-LPLKYPQ 236 (666)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~-------~~~--------~~~~~~~~~~v~~~~~~~~W~~~-~~~~~~~ 236 (666)
.+..|+++++.++++||||+++..+..|+.. .+. ........++|.+ ..|+|+++ ..+..++
T Consensus 76 ~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d--~~~~w~~~~~~p~~~~ 153 (688)
T TIGR02100 76 DPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD--PDFDWGGDEQRPRTPW 153 (688)
T ss_pred CCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC--CCCCCCCcccCCCCCc
Confidence 8889999999999999999999766433110 000 0000112344543 35999977 5566789
Q ss_pred CCeEEEEEEeCCcccCCCC-CCCCCcchhhhhhh--hHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcc
Q 005976 237 RDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEK--LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (666)
Q Consensus 237 ~~~vIYei~v~~f~~~~~~-~~~~~G~~~gi~~~--L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (666)
+++|||||||++|+..+++ ....+|||+||+++ |+|||+||||+||||||+++.+..... .....++|||+|
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~-----~~~~~~ywGYd~ 228 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLL-----EKGLRNYWGYNT 228 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCcccccc-----ccCCCCccCcCc
Confidence 9999999999999985433 34568999999985 999999999999999999986432110 111235799999
Q ss_pred cCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCC--CCc
Q 005976 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK--GEF 391 (666)
Q Consensus 314 ~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~--g~~ 391 (666)
.+||+|+++||+. |+++|||+||++||++||+||||||+||++.++..++...+++.++..||+..+. +.+
T Consensus 229 ~~y~a~d~~y~~~-------g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~ 301 (688)
T TIGR02100 229 LGFFAPEPRYLAS-------GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYY 301 (688)
T ss_pred ccccccChhhcCC-------CCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCcee
Confidence 9999999999873 4599999999999999999999999999998887777778888888899988765 678
Q ss_pred cccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHH
Q 005976 392 YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID 471 (666)
Q Consensus 392 ~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 471 (666)
.++++|+++||+++|+||++|++++++|+++|||||||||++..|.+...-+ ....++++
T Consensus 302 ~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~--------------------~~~~~~~~ 361 (688)
T TIGR02100 302 INDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF--------------------DMLSGFFT 361 (688)
T ss_pred cCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC--------------------cccHHHHH
Confidence 8899999999999999999999999999999999999999999997531100 01245789
Q ss_pred HHhcCCCCCCceEEEeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCc
Q 005976 472 LISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPW 550 (666)
Q Consensus 472 ~i~~~~~~~~~~liaE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~ 550 (666)
+|+.++++++++||||.|+.+ +.++.+.++. .+++||+.|++.+|.|++|..+....|+..|+++...|......|.
T Consensus 362 ~i~~d~~~~~~~ligE~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~ 439 (688)
T TIGR02100 362 AIRQDPVLAQVKLIAEPWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPW 439 (688)
T ss_pred HHHhCcccCCeEEEEeeecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcC
Confidence 999999999999999999876 5677777653 5799999999999999999998999999999999888876666789
Q ss_pred ceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceecc
Q 005976 551 NSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMIS 630 (666)
Q Consensus 551 ~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy 630 (666)
.+||||++||++||.|+++|+.|||+++|++|+||.++|+|||||.||++....+..+|.+++|+++++|||+|||||||
T Consensus 440 ~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~ 519 (688)
T TIGR02100 440 ASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLL 519 (688)
T ss_pred EEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 99999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred ccccccCcCCCCCCCCCCCCcccccccccc
Q 005976 631 MGDEYGHTKGGNNNTYCHDNDVNLCTLLIS 660 (666)
Q Consensus 631 ~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~ 660 (666)
||||+|+||.||+|+||+++++||+||...
T Consensus 520 ~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~ 549 (688)
T TIGR02100 520 AGDEFGRTQQGNNNAYCQDNEIGWVDWSLD 549 (688)
T ss_pred ecHhhccCCCCCCCCccCCCcccccCcccc
Confidence 999999999999999999999999999854
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-98 Score=840.47 Aligned_cols=536 Identities=47% Similarity=0.843 Sum_probs=473.8
Q ss_pred ccccCCCCCCCCeEEe---CCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceE
Q 005976 88 FQVSKGYPTPFGATLR---DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLY 164 (666)
Q Consensus 88 ~~~~~g~~~~lGa~~~---~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y 164 (666)
..+..|.+.|+||+.. +.|++|++++.+|.+|+||||+.... .+....++++ .+.|.+|++.+|+...+..|
T Consensus 10 ~~~~~g~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~--~~~~~~~~~~---~~~G~iw~~~~p~~~~g~~y 84 (697)
T COG1523 10 MTLQPGKPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGN--TEEGRLYPYD---GELGAIWHLWLPGAKPGQVY 84 (697)
T ss_pred eeeccCCcccccceeeeccCcceEEeeeccccceEEEEecCcccc--cccccccccC---CccccEEEEEcCCCceeeEE
Confidence 6677899999999984 59999999999999999999976321 1111224543 45678999999999999999
Q ss_pred EEEEcCccCCCCCccccCcceecCccceeeeeccccCCcCC---------------CCCCCCcceeccCCCCCCCCCCCC
Q 005976 165 GYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGP---------------DENCWPQMACLVPTPEDEFDWEGD 229 (666)
Q Consensus 165 ~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~W~~~ 229 (666)
.|+++|.+.+..|+++++.++..||||+++.+...++.... ..+.-+...+++.. ..++|+.+
T Consensus 85 ~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~--~~~~w~~~ 162 (697)
T COG1523 85 GYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVID--PLFDWEND 162 (697)
T ss_pred EEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEec--cccccccC
Confidence 99999999999999999999999999999998876651110 01111122333332 23899999
Q ss_pred CCCCCCCCCeEEEEEEeCCccc-CCCCCCCCCcchhhhhhh--hHHHHHcCCceEEECccccccccccccccCcCCCCCc
Q 005976 230 LPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPGTYLGVVEK--LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKV 306 (666)
Q Consensus 230 ~~~~~~~~~~vIYei~v~~f~~-~~~~~~~~~G~~~gi~~~--L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~ 306 (666)
.++..|++++||||+|||+||. ++......+|||.|+++. |+|||+||||||+||||+.+...... ......
T Consensus 163 ~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l-----~~~gl~ 237 (697)
T COG1523 163 KPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHL-----DKSGLN 237 (697)
T ss_pred CCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccc-----cccccc
Confidence 8889999999999999999995 444555678999999999 99999999999999999998654322 134456
Q ss_pred cccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeC
Q 005976 307 NFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA 386 (666)
Q Consensus 307 ~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~ 386 (666)
|||||+|..||+|+++|.+++. +..++.|||+||+++|++||+||||||||||++++..++.++|+++++.+||+.+
T Consensus 238 n~WGYdP~~fFAp~~~Yss~p~---p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~ 314 (697)
T COG1523 238 NNWGYDPLNFFAPEGRYASNPE---PATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLD 314 (697)
T ss_pred cccCCCcccccCCCccccCCCC---cchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEEC
Confidence 8999999999999999999876 3467999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCC
Q 005976 387 PKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS 466 (666)
Q Consensus 387 ~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~ 466 (666)
++|.+.+++|||+++|+++|+||++|+|+|+||++||||||||||+|..+.++.. .....
T Consensus 315 ~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~--------------------~~~~~ 374 (697)
T COG1523 315 PDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETM--------------------LFDIN 374 (697)
T ss_pred CCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccc--------------------ccccC
Confidence 9999999999999999999999999999999999999999999999999987543 01223
Q ss_pred hHHHHHHhcCCCCCCceEEEeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCC
Q 005976 467 PPLIDLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGG 545 (666)
Q Consensus 467 ~~~~~~i~~~~~~~~~~liaE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~ 545 (666)
++++..+..+|++.++++|||.||.+ +.|++|.||....|++||+.|++.+|.|++|+.+..+.|+..+.+++++|...
T Consensus 375 ~~l~~~~~~~p~l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~ 454 (697)
T COG1523 375 ANLFLAGEGDPVLSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRN 454 (697)
T ss_pred cchhhhccCCccccCceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhcc
Confidence 55889999999999999999999988 79999999977789999999999999999999999999999999999999888
Q ss_pred CCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 005976 546 GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 625 (666)
Q Consensus 546 ~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pG 625 (666)
++.|.++||||++||++||+|+++|+.|||+++|+.++||.+.|+|||||.+|++....+...|.++.+++++.||+++|
T Consensus 455 ~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG 534 (697)
T COG1523 455 GRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQG 534 (697)
T ss_pred CCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccccccCcCCCCCCCCCCCCcccccccc
Q 005976 626 VPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLL 658 (666)
Q Consensus 626 iP~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~ 658 (666)
+|||-+|||+|+|+.||||+|||||++||+||.
T Consensus 535 ~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~ 567 (697)
T COG1523 535 TPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWS 567 (697)
T ss_pred CcccccccccccccccccccccCCcccceeccC
Confidence 999999999999999999999999999999999
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.7e-90 Score=834.56 Aligned_cols=529 Identities=40% Similarity=0.700 Sum_probs=451.4
Q ss_pred ccccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEE
Q 005976 88 FQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYK 167 (666)
Q Consensus 88 ~~~~~g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~ 167 (666)
..+..|++.||||++.++||+|+||||+|++|+||||+..+ .....+++| ..++++||+++|++...+.+|+|+
T Consensus 6 ~~~~~g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~---~~~~~~~~l---~~~~g~vW~~~i~~~~~g~~Ygyr 79 (1221)
T PRK14510 6 NSVSPGFREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWG---VREEARIKL---PGRTGDVWHGFIVGVGPGARYGNR 79 (1221)
T ss_pred cccCCCCCCCCceEEECCeEEEEEECCCCCEEEEEEEECCC---CCeeEEEEC---CCCcCCEEEEEEccCCCCcEEEEE
Confidence 45667999999999999999999999999999999997532 122335666 346789999999999999999999
Q ss_pred EcCccCCCCCccccCcceecCccceeeeeccccCC-cCCC----------CCCCCcceeccCCCCCCCCCCCCCCCCCCC
Q 005976 168 FDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV-LGPD----------ENCWPQMACLVPTPEDEFDWEGDLPLKYPQ 236 (666)
Q Consensus 168 i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~-~~~~----------~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~ 236 (666)
++|...++.|.++++.++++||||+++..+..+.. +.+. ++..-...+++. +.|+|.++.++..+|
T Consensus 80 v~g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~---~~~~W~~~~~~~~~~ 156 (1221)
T PRK14510 80 QEGPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVP---TPFTWAPRSPLHGDW 156 (1221)
T ss_pred eccCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceee---cccccCCCCCCCCCc
Confidence 99988888999999999999999999986543321 1110 000000112222 269999888888899
Q ss_pred CCeEEEEEEeCCccc-CCCCCCCCCcchhhhh--hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcc
Q 005976 237 RDLIIYEVHVRGFTR-HESSKTEHPGTYLGVV--EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (666)
Q Consensus 237 ~~~vIYei~v~~f~~-~~~~~~~~~G~~~gi~--~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (666)
+++||||+||++|+. ++..+....|+|++|. ++|+|||+||||+||||||+++.+.... ......|||||++
T Consensus 157 ~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~-----~~~g~~~yWGY~~ 231 (1221)
T PRK14510 157 DDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHL-----PQLGLSNYWGYNT 231 (1221)
T ss_pred ccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCccccc-----ccccCcCcCCCCC
Confidence 999999999999997 4555667789999999 6799999999999999999997642211 0122457899999
Q ss_pred cCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCC--CCCc
Q 005976 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP--KGEF 391 (666)
Q Consensus 314 ~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~--~g~~ 391 (666)
.+||+|+++||+ ++.+|||+||++||++||+||||||+|||+.++.++|.+.+++.+++.||+..+ .+.+
T Consensus 232 ~~yfa~dp~yg~--------~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y 303 (1221)
T PRK14510 232 VAFLAPDPRLAP--------GGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEY 303 (1221)
T ss_pred CCCCCcChhhcc--------CcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcc
Confidence 999999999994 239999999999999999999999999999998888888888889999998764 3567
Q ss_pred cccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccC-CCccccccccCccccCcccccCCCCCChHHH
Q 005976 392 YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRG-SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLI 470 (666)
Q Consensus 392 ~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~-~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~ 470 (666)
.+++||++.+|+++|+|+++|+++++||++ |||||||||+|+.+.+. ..||..+ .+.+
T Consensus 304 ~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~--------------------~~~l 362 (1221)
T PRK14510 304 ENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEF--------------------RQFL 362 (1221)
T ss_pred cCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHH--------------------HHHH
Confidence 789999999999999999999999999997 99999999999999542 3466641 2357
Q ss_pred HHHhcCCCCCCceEEEeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCC
Q 005976 471 DLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKP 549 (666)
Q Consensus 471 ~~i~~~~~~~~~~liaE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p 549 (666)
+.+..++++.++++|||.|+.+ +.++.+.++.+ +++||+.|++.+|.|++|+.+....++..+.++...|......+
T Consensus 363 ~ai~~d~~l~~~~ligE~Wd~~~~~~~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~ 440 (1221)
T PRK14510 363 KAMDQDPVLRRLKMIAEVWDDGLGGYQYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNF 440 (1221)
T ss_pred HHhCCCcCcccCcEEEecccCCCCccccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCc
Confidence 7788888889999999999976 56788888753 78999999999999999998888999999999988887556778
Q ss_pred cceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceec
Q 005976 550 WNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMI 629 (666)
Q Consensus 550 ~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~I 629 (666)
..+||||+|||++||.|+++|+.|||++|||+|+||.++|+|||||.||++....+..++.+++|+++++|||+||||||
T Consensus 441 ~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I 520 (1221)
T PRK14510 441 SRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML 520 (1221)
T ss_pred ccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcCCCCCCCCCCCCccccccccccc
Q 005976 630 SMGDEYGHTKGGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 630 y~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
|||||+|+|+.||+|.||+++.++|++|...+
T Consensus 521 y~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~ 552 (1221)
T PRK14510 521 YYGDEAGRSQNGNNNGYAQDNNRGTYPWGNED 552 (1221)
T ss_pred ecchhcccccCCCCCCCCCCCccccCCccccc
Confidence 99999999999999999999999999998743
No 5
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.5e-78 Score=694.52 Aligned_cols=472 Identities=29% Similarity=0.502 Sum_probs=366.3
Q ss_pred CCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCcc
Q 005976 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (666)
Q Consensus 93 g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~ 172 (666)
.|..||||++..+|++|+||||+|++|+|++|...+ ...+...++|.+ ..+|+|+++|++...+.+|+|+|.+.
T Consensus 7 ~~~~~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~--~~~~~~~~~m~~---~~~gvw~~~i~~~~~g~~Y~y~v~~~- 80 (605)
T TIGR02104 7 YYDGELGAVYTPEKTVFRVWAPTATEVELLLYKSGE--DGEPYKVVKMKR---GENGVWSAVLEGDLHGYFYTYQVCIN- 80 (605)
T ss_pred CCCCCCccEEECCeeEEEEECCCCCEEEEEEEcCCC--CCccceEEeccc---CCCCEEEEEECCCCCCCEEEEEEEcC-
Confidence 355699999999999999999999999999987532 112234677753 46799999999999999999999853
Q ss_pred CCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCC--CCCCCCCCCC-CCCCCCCCeEEEEEEeCCc
Q 005976 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEFDWEGDL-PLKYPQRDLIIYEVHVRGF 249 (666)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~W~~~~-~~~~~~~~~vIYei~v~~f 249 (666)
| ...+++||||+++..++.. ++|.+. ...++|..+. ++..+++++|||||||++|
T Consensus 81 ----~----~~~~~~DPya~~~~~~~~~--------------s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~f 138 (605)
T TIGR02104 81 ----G----KWRETVDPYAKAVTVNGKR--------------GAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDF 138 (605)
T ss_pred ----C----CeEEEcCCCcceeccCCCc--------------EEEEcccccCccCcccccCCCCCChhHcEEEEEecchh
Confidence 1 1246899999998544322 222221 1346788765 6666789999999999999
Q ss_pred ccCCCCCCCCCcchhhhhhh-----------hHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC
Q 005976 250 TRHESSKTEHPGTYLGVVEK-----------LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (666)
Q Consensus 250 ~~~~~~~~~~~G~~~gi~~~-----------L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~ 318 (666)
+.+++++...+|||.+++++ |+|||+||||+||||||+++.+.... .+. ...+|||++.+||+
T Consensus 139 t~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~-----~~~-~~~~wGY~~~~y~~ 212 (605)
T TIGR02104 139 SIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEE-----DPN-NAYNWGYDPLNYNV 212 (605)
T ss_pred ccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccc-----cCC-CCCCCCCCCccCCC
Confidence 99877776678999999876 99999999999999999998653211 011 11249999999999
Q ss_pred cCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCC
Q 005976 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCG 398 (666)
Q Consensus 319 ~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~ 398 (666)
|+++||+++.. +.++++|||+||++||++||+||||||+||++.... ..|++..+.+||+.++.|.+.++++|+
T Consensus 213 ~~~~y~~~p~~--~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~----~~f~~~~~~~~~~~~~~g~~~~~~g~~ 286 (605)
T TIGR02104 213 PEGSYSTNPYD--PATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE----SPFEKTVPGYYYRYNEDGTLSNGTGVG 286 (605)
T ss_pred cChhhhcCCCc--cchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC----CcccCCCCCeeEEECCCCCccCCCccc
Confidence 99999997643 234589999999999999999999999999975321 235555556677778888888899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCC
Q 005976 399 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPI 478 (666)
Q Consensus 399 ~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ 478 (666)
+++|+++|+||++|++++++|+++|||||||||++++++. +||.. +.+.++. .
T Consensus 287 ~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~--~~~~~-----------------------~~~~~~~--~ 339 (605)
T TIGR02104 287 NDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDI--ETMNE-----------------------IRKALNK--I 339 (605)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCH--HHHHH-----------------------HHHHHHh--h
Confidence 9999999999999999999999999999999999988863 34443 3344433 6
Q ss_pred CCCceEEEeeccCCCcccc------cccCCCCcccccchhHHHHHH---------HHHhCCCCcHHHHHHHHhCCCccc-
Q 005976 479 LRGVKLIAEAWDTGGLYQV------GIFPHWGIWSEWNGKYRDIVR---------QFIKGTDGFAGAFAECLCGSPNLY- 542 (666)
Q Consensus 479 ~~~~~liaE~w~~~~~~~~------g~~~~~~~~~~~n~~f~~~~r---------~~l~g~~~~~~~~~~~l~~~~~~~- 542 (666)
.|++++|||.|+.+..... +.......++.||+.|++.++ .|++|..+....++..+.++...+
T Consensus 340 ~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~ 419 (605)
T TIGR02104 340 DPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDA 419 (605)
T ss_pred CCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcc
Confidence 7899999999987632211 111122357899999999998 445555455677777777654433
Q ss_pred -cCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 005976 543 -QGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLM 621 (666)
Q Consensus 543 -~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alll 621 (666)
......|..+||||+|||++|+.|++++..+. . ....+.+++|+|++++|
T Consensus 420 ~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~------~-----------------------~~~~~~~r~rla~alll 470 (605)
T TIGR02104 420 VKPSALDPSQSINYVECHDNHTLWDKLSLANPD------E-----------------------TEEQLKKRQKLATAILL 470 (605)
T ss_pred cccccCChhheEEEEEecCCCCHHHHHHhhCCC------C-----------------------CHHHHHHHHHHHHHHHH
Confidence 12345788999999999999999998764320 0 01346778999999999
Q ss_pred hhcCceeccccccccCcCCCCCCCCCCCCcccccccccc
Q 005976 622 VSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLIS 660 (666)
Q Consensus 622 t~pGiP~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~ 660 (666)
|+|||||||||||+|+++.+|+|+||+++.+++++|...
T Consensus 471 ts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~ 509 (605)
T TIGR02104 471 LSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRK 509 (605)
T ss_pred HcCCCceeecchhhhccCCCCCCCccCCCcccccCcccc
Confidence 999999999999999999999999999999999999864
No 6
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.4e-76 Score=697.50 Aligned_cols=486 Identities=27% Similarity=0.442 Sum_probs=351.9
Q ss_pred CCCCCCCeEEeCCc-EEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcC------CCCCceEE
Q 005976 93 GYPTPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG------DFKDMLYG 165 (666)
Q Consensus 93 g~~~~lGa~~~~~g-~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~------~~~~~~Y~ 165 (666)
.+..+|||++.++| ++|+||||+|++|+|+||+.++. .+....++|. ...+|||+++|++ ++.+++|+
T Consensus 314 ~y~g~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~--~~~~~~~~m~---~~~~GvW~v~v~~~~~G~~d~~G~~Y~ 388 (1111)
T TIGR02102 314 AYDGKLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQ--DKVVGTVELK---KGDRGVWEVQLTKENTGIDSLTGYYYH 388 (1111)
T ss_pred ccCCCCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCC--CCceeeEecc---cCCCCEEEEEECCcccCcccCCCceEE
Confidence 45668999998776 89999999999999999986432 1223467775 3568999999995 46799999
Q ss_pred EEEcCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCC----CCCCCCCCCCCCCCCCCCeEE
Q 005976 166 YKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP----EDEFDWEGDLPLKYPQRDLII 241 (666)
Q Consensus 166 y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~W~~~~~~~~~~~~~vI 241 (666)
|+|.+. ...++++||||+++...... .. ........++|.+. +..++|.. .+...+++++||
T Consensus 389 Y~V~~~---------~~~~~~~DPYA~al~~~n~~---~~-~~~~~~~ks~vvD~~~~~p~~~~~~~-~~~~~~~~d~vI 454 (1111)
T TIGR02102 389 YEITRG---------GDKVLALDPYAKSLAAWNDA---TS-DDQIKVAKAAFVDPSSLGPQELDFAK-IENFKKREDAII 454 (1111)
T ss_pred EEEECC---------CceEEEeChhheEEeccCcc---cc-cccCCCCceEEEcCcccCcccccccc-ccccCCccceEE
Confidence 999853 23457899999998642100 00 00000112233221 12467764 344456799999
Q ss_pred EEEEeCCcccCCCCCCC---CCcchhhhhhhhHHHHHcCCceEEECccccccccccccccC---cCCCCCc-cccCCccc
Q 005976 242 YEVHVRGFTRHESSKTE---HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNS---VLGDYKV-NFWGYSTI 314 (666)
Q Consensus 242 Yei~v~~f~~~~~~~~~---~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~---~~~~~~~-~~wGY~~~ 314 (666)
||+|||+|+...+++.. ..|||+||+++|+|||+|||||||||||+++...+...... ..+.... .+|||+|.
T Consensus 455 YElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~ 534 (1111)
T TIGR02102 455 YEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQ 534 (1111)
T ss_pred EEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcC
Confidence 99999999975554433 47999999999999999999999999999864322111000 0000011 24999999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcccc
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY 394 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~ 394 (666)
+||+|+++||+++..+ ..+++|||+||++||++||+||||||+||++..+ .|++..+.+|++.+..|...+.
T Consensus 535 ~yfape~~Ygtdp~dp--~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~------~f~~~~p~Yy~~~~~~G~~~~~ 606 (1111)
T TIGR02102 535 NYFALSGMYSEDPKDP--ELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY------IFEDLEPNYYHFMDADGTPRTS 606 (1111)
T ss_pred cCcccccccccCCcCc--cccHHHHHHHHHHHHHCCCEEEEecccccccccc------cccccCCCceEeeCCCCCcccc
Confidence 9999999999976543 3568999999999999999999999999998754 3455555556566666665443
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHh
Q 005976 395 SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 474 (666)
Q Consensus 395 ~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 474 (666)
.|++++++++++||++|+++++||+++|||||||||++++++. .+|.. +...+.
T Consensus 607 -~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~--~~~~~-----------------------~~~~l~ 660 (1111)
T TIGR02102 607 -FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDA--ASIEI-----------------------AYKEAK 660 (1111)
T ss_pred -cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCH--HHHHH-----------------------HHHHHH
Confidence 3468999999999999999999999999999999999987753 12221 233333
Q ss_pred cCCCCCCceEEEeeccCC---CcccccccCCCCcccccc---hhHHHHHHHHHhCC-------------CCcHHHHHHHH
Q 005976 475 NDPILRGVKLIAEAWDTG---GLYQVGIFPHWGIWSEWN---GKYRDIVRQFIKGT-------------DGFAGAFAECL 535 (666)
Q Consensus 475 ~~~~~~~~~liaE~w~~~---~~~~~g~~~~~~~~~~~n---~~f~~~~r~~l~g~-------------~~~~~~~~~~l 535 (666)
. +.|+++|+||.|+.. ..+..+.+. ..+..|+ +.|++.+|++++|. .+....+...+
T Consensus 661 ~--~dP~~~liGE~W~~~~g~~~~~~~~~~--~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i 736 (1111)
T TIGR02102 661 A--INPNIIMIGEGWRTYAGDEGDPVQAAD--QDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNI 736 (1111)
T ss_pred H--hCcCEEEEEecccccCCCCcccccccc--hhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhh
Confidence 2 456999999999862 122222111 1222222 45666666666653 22345677778
Q ss_pred hCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 005976 536 CGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRN 615 (666)
Q Consensus 536 ~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~ 615 (666)
.+++..|. ...|.++||||+|||++||+|+++++.+++.++++++ +...++.|+
T Consensus 737 ~g~~~~~~--~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~------------------------~~~~~r~rl 790 (1111)
T TIGR02102 737 KAQPHNFE--ADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQ------------------------EEIHRRIRL 790 (1111)
T ss_pred cCCccccc--cCCcccEEEEEecCCCCchHhhhhhccccCcccccch------------------------HHHHHHHHH
Confidence 88776552 3579999999999999999999999988887766521 112467778
Q ss_pred HHHHHHhhcCceeccccccccCcCCCCCCCCCC----------------------------------CCccccccccccc
Q 005976 616 FFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCH----------------------------------DNDVNLCTLLISG 661 (666)
Q Consensus 616 a~alllt~pGiP~Iy~GdE~G~t~~gn~n~y~~----------------------------------~~~~n~~dw~~~~ 661 (666)
+.+++||+|||||||+||||++||.||||+||+ ++++||+||.+..
T Consensus 791 a~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~ 870 (1111)
T TIGR02102 791 GNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKAT 870 (1111)
T ss_pred HHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccc
Confidence 889999999999999999999999999766666 8999999999874
No 7
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.4e-75 Score=675.10 Aligned_cols=493 Identities=25% Similarity=0.385 Sum_probs=356.6
Q ss_pred CCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCcc
Q 005976 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (666)
Q Consensus 93 g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~ 172 (666)
.+..+|||++.+++++|+||||+|++|+|+||+..+ .......++|+ ..+|||+++++++..+.+|+|+|+. +
T Consensus 210 ~y~~~LGA~~~~~g~~F~VWAPtA~~V~L~lyd~~~--~~~~~~~~~m~----~~~GVWsv~v~~~~~G~~Y~Y~V~v-~ 282 (970)
T PLN02877 210 AYDGPLGAHFSKDAVSLYLWAPTAQAVSLCLYDDPR--GKEPLEIVQLK----ESNGVWSVEGPKSWEGCYYVYEVSV-Y 282 (970)
T ss_pred cCCCCCcceEecCCEEEEEECCCCCEEEEEEecCCC--CccceEEeccc----CCCCEEEEEeccCCCCCeeEEEEee-c
Confidence 345699999999999999999999999999997532 12233455663 4689999999999999999999973 3
Q ss_pred CCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCC---CCCCCCCCCeEEEEEEeCCc
Q 005976 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGD---LPLKYPQRDLIIYEVHVRGF 249 (666)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~---~~~~~~~~~~vIYei~v~~f 249 (666)
.+..|+. ....+.||||+++..++..+.+.+... ..-...+|... .++..+++++||||+|||+|
T Consensus 283 ~p~~g~~--~~~~v~DPYA~als~ng~~S~vvDl~~----------~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDF 350 (970)
T PLN02877 283 HPSTGKV--ETCYANDPYARGLSADGRRTLLVDLDS----------DDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDF 350 (970)
T ss_pred ccCCCcc--cccccCCccceEEecCCCceEEECCcc----------ccCCChhhhhcccccCccCCCcccEEEEEecccc
Confidence 4444543 245689999999976654433322110 00124578752 34445678999999999999
Q ss_pred ccCCCC-CCCCCcchhhhhhh-------hHHHHHcCCceEEECcccccccccccccc---------------CcC-----
Q 005976 250 TRHESS-KTEHPGTYLGVVEK-------LDHLKDLGINCLELMPCHEFNELEYFSYN---------------SVL----- 301 (666)
Q Consensus 250 ~~~~~~-~~~~~G~~~gi~~~-------L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~---------------~~~----- 301 (666)
+.++++ ....+|+|.+++++ |+|||+||||||+|||++++.+.+....+ +..
T Consensus 351 S~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v 430 (970)
T PLN02877 351 SANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAI 430 (970)
T ss_pred ccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcc
Confidence 986644 34678999999987 66666779999999999999764321100 000
Q ss_pred ---CCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCC
Q 005976 302 ---GDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVD 378 (666)
Q Consensus 302 ---~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~ 378 (666)
.+...+||||+|.+||+|+++|++++..+ .++.|||+||++||++||+|||||||||++..++++....++...
T Consensus 431 ~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~---~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~v 507 (970)
T PLN02877 431 TAIQDDDGYNWGYNPVLWGVPKGSYASNPDGP---CRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIV 507 (970)
T ss_pred cccccCCCCCCCCCccccCCCCcccccCCCCc---chHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCC
Confidence 01123689999999999999999987533 468999999999999999999999999998876655445666666
Q ss_pred CccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCccc
Q 005976 379 NSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLL 458 (666)
Q Consensus 379 ~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~ 458 (666)
+.+||+.++.|.+.+ +.|+++.+.++++||++|+|+++||++||||||||||++++++++ .|..+
T Consensus 508 P~YY~r~~~~G~~~n-s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~--tm~~~------------ 572 (970)
T PLN02877 508 PGYYLRRNSDGFIEN-STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKR--TMVRA------------ 572 (970)
T ss_pred CCceEEECCCCCccc-CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHH--HHHHH------------
Confidence 677888888888877 567788899999999999999999999999999999999999853 22220
Q ss_pred ccCCCCCChHHHHHHhcC--CC-CCCceEEEeeccCCCccccc--------ccCCCCcccccchhHHHHHHH---HHh-C
Q 005976 459 TTGTPLRSPPLIDLISND--PI-LRGVKLIAEAWDTGGLYQVG--------IFPHWGIWSEWNGKYRDIVRQ---FIK-G 523 (666)
Q Consensus 459 ~~g~~~~~~~~~~~i~~~--~~-~~~~~liaE~w~~~~~~~~g--------~~~~~~~~~~~n~~f~~~~r~---~l~-g 523 (666)
...++.|..+ .+ .++++|+||.|+.+...... ..... ..+.+|+.+||.+|. |-. .
T Consensus 573 --------~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~-gIg~FnD~~RDavkGg~~F~~~~ 643 (970)
T PLN02877 573 --------KDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGT-GIGSFNDRIRDAMLGGSPFGHPL 643 (970)
T ss_pred --------HHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCC-ceEEecchhHHHHcCCCCCCCcC
Confidence 1123333221 12 36799999999876431111 00011 356677777777662 200 0
Q ss_pred CCCcH--------------------------HHHHHHHhCCCcc------------------cc----CCCCCCcceEEe
Q 005976 524 TDGFA--------------------------GAFAECLCGSPNL------------------YQ----GGGRKPWNSINF 555 (666)
Q Consensus 524 ~~~~~--------------------------~~~~~~l~~~~~~------------------~~----~~~~~p~~~inf 555 (666)
..|+. ..+...|.|+... |. ....+|.++|||
T Consensus 644 ~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InY 723 (970)
T PLN02877 644 QQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINY 723 (970)
T ss_pred CCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheee
Confidence 01111 1122334444321 11 123579999999
Q ss_pred cccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccc
Q 005976 556 VCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEY 635 (666)
Q Consensus 556 v~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~ 635 (666)
+++|||.||+|.+.+...... ..+.|.++.+++++++|++||||+|++|+||
T Consensus 724 vs~HDN~TL~D~l~~~~~~~~----------------------------s~~~r~r~~~la~aiv~lsQGipF~haG~E~ 775 (970)
T PLN02877 724 VSAHDNETLFDIISLKTPMEI----------------------------SVDERCRINHLATSIIALSQGIPFFHAGDEI 775 (970)
T ss_pred eeccCCchHHHHHHhhcCCCC----------------------------CHHHHHHHHHHHHHHHHHhChhhHHhcchhh
Confidence 999999999999876432110 0123567788999999999999999999999
Q ss_pred cCcCCCCCCCCCCCCccccccccc
Q 005976 636 GHTKGGNNNTYCHDNDVNLCTLLI 659 (666)
Q Consensus 636 G~t~~gn~n~y~~~~~~n~~dw~~ 659 (666)
++||.+++|+|++++++|++||++
T Consensus 776 lRSK~~d~nSYnSgD~~N~lDw~~ 799 (970)
T PLN02877 776 LRSKSLDRDSYNSGDWFNRLDFSY 799 (970)
T ss_pred hcCCCCCCCCCcCchhhheecccc
Confidence 999999999999999999999998
No 8
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=5.7e-75 Score=672.56 Aligned_cols=511 Identities=24% Similarity=0.406 Sum_probs=366.5
Q ss_pred cccccceeeecc-cccccccccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCC
Q 005976 71 KSAELETAVIKK-PQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGD 149 (666)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~g 149 (666)
++..-.++-|+. ..|+......|...+|||++.+++++|+||||+|++|+|+||+.. ++ ....++|.. ....|
T Consensus 100 ~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~-~~---~~~~~~M~~--~~~~G 173 (898)
T TIGR02103 100 NGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSAS-KK---VETTLPMTR--DSTSG 173 (898)
T ss_pred CCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCC-CC---ccceEeCcc--CCCCC
Confidence 333333445565 456664455665567999999999999999999999999999743 22 234677753 22579
Q ss_pred EEEEEEcCCCCCceEEEEEcCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCC
Q 005976 150 VWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGD 229 (666)
Q Consensus 150 vW~~~i~~~~~~~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~ 229 (666)
+|+++++++..+.+|+|+|+. +.+..|+. ....+.||||+++..++.++.+.+... ..-.+.+|..+
T Consensus 174 VWsv~v~g~~~G~~Y~Y~V~v-~~p~~G~v--~~~~v~DPYA~als~n~~~S~VvDl~~----------~~~~p~~W~~~ 240 (898)
T TIGR02103 174 VWSAEGGSSWKGAYYRYEVTV-YHPSTGKV--ETYLVTDPYSVSLSANSEYSQVVDLND----------PALKPEGWDAL 240 (898)
T ss_pred EEEEEECcCCCCCEeEEEEEE-ecCCCCeE--CCeEEeCcCcceEcCCCCCeEEeCCcc----------ccCCCcchhhc
Confidence 999999999999999999983 33444543 245789999999976665554433210 00124578765
Q ss_pred CCCC---CCCCCeEEEEEEeCCcccCCCCCC-CCCcchhhhhhh-------hHHHHHcCCceEEECcccccccccccccc
Q 005976 230 LPLK---YPQRDLIIYEVHVRGFTRHESSKT-EHPGTYLGVVEK-------LDHLKDLGINCLELMPCHEFNELEYFSYN 298 (666)
Q Consensus 230 ~~~~---~~~~~~vIYei~v~~f~~~~~~~~-~~~G~~~gi~~~-------L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~ 298 (666)
..++ .+++++||||+|||+|+.++++.. ..+|+|.+++++ |+||++||||||+|||||++.+.+.....
T Consensus 241 ~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~ 320 (898)
T TIGR02103 241 AMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEK 320 (898)
T ss_pred ccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCcccccccc
Confidence 4222 367999999999999998765543 578999999986 66666889999999999999754321100
Q ss_pred C--------------c--------------------------CC--------CCCccccCCcccCCCCcCCCCCCCCccC
Q 005976 299 S--------------V--------------------------LG--------DYKVNFWGYSTINYFSPMISYSSAGIRN 330 (666)
Q Consensus 299 ~--------------~--------------------------~~--------~~~~~~wGY~~~dy~~~d~~ygt~~~~~ 330 (666)
. + .. +...+||||+|.+||+|+++|++++.
T Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~-- 398 (898)
T TIGR02103 321 VADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPE-- 398 (898)
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCC--
Confidence 0 0 00 01124799999999999999999864
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHH
Q 005976 331 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQ 410 (666)
Q Consensus 331 ~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~ 410 (666)
+..++.|||+||++||++||+||||||+|||+..+.... ..++...+.+||+.+..|.+.+..+| +++++++|+||+
T Consensus 399 -g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~-s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~Vrk 475 (898)
T TIGR02103 399 -GPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDR-SVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMMAK 475 (898)
T ss_pred -CchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCc-ccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHHHH
Confidence 345789999999999999999999999999988654322 23444445566667667777777776 578999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceEEEeecc
Q 005976 411 FIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWD 490 (666)
Q Consensus 411 ~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~liaE~w~ 490 (666)
+|++++++|+++|||||||||++++++. +||.. +.+.++. +.|+++++||.|+
T Consensus 476 ~iiDsl~~W~~ey~VDGFRfDlm~~~~~--~f~~~-----------------------~~~~l~~--i~pdi~l~GEgW~ 528 (898)
T TIGR02103 476 LIVDSLVVWAKDYKVDGFRFDLMGHHPK--AQMLA-----------------------AREAIKA--LTPEIYFYGEGWD 528 (898)
T ss_pred HHHHHHHHHHHHcCCCEEEEechhhCCH--HHHHH-----------------------HHHHHHH--hCCCEEEEecCCC
Confidence 9999999999999999999999999985 45554 4455554 5679999999998
Q ss_pred CCCccc------ccc--cCCCCcccccchhHHHHHHH---HHh-----CCCCcH-------------------------H
Q 005976 491 TGGLYQ------VGI--FPHWGIWSEWNGKYRDIVRQ---FIK-----GTDGFA-------------------------G 529 (666)
Q Consensus 491 ~~~~~~------~g~--~~~~~~~~~~n~~f~~~~r~---~l~-----g~~~~~-------------------------~ 529 (666)
.+.... ..+ .... ..+.+|+.+|+++|. |-. ...|+. .
T Consensus 529 ~~~~~~~~~~~~a~~~n~~~~-~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d 607 (898)
T TIGR02103 529 FGEVANNRRFINATQLNLAGT-GIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLAD 607 (898)
T ss_pred cccccchhhhhhhhccccCCC-CeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHH
Confidence 653211 111 1111 345667777776663 111 001110 1
Q ss_pred HHHHHHhCCCcc-----------------cc----CCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCC
Q 005976 530 AFAECLCGSPNL-----------------YQ----GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETH 588 (666)
Q Consensus 530 ~~~~~l~~~~~~-----------------~~----~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~ 588 (666)
.+...|.|+... |. ....+|..+|||+++|||.||+|.+.+.......
T Consensus 608 ~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~----------- 676 (898)
T TIGR02103 608 LTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETP----------- 676 (898)
T ss_pred HHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCC-----------
Confidence 222334443211 11 1236789999999999999999999764321100
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcCCCCCCCCCCCCccccccccccc
Q 005976 589 NNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 589 ~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
...|.++.+++++++|++||||+|++|+|+++||.+++|+|++++++|++||.+.+
T Consensus 677 -----------------~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~ 732 (898)
T TIGR02103 677 -----------------SAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQD 732 (898)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccc
Confidence 12256777899999999999999999999999999999999999999999998764
No 9
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-73 Score=622.54 Aligned_cols=513 Identities=34% Similarity=0.514 Sum_probs=436.0
Q ss_pred CCCCCeEEeCCc-EEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCC--CCCceEEEEEcCc
Q 005976 95 PTPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGK 171 (666)
Q Consensus 95 ~~~lGa~~~~~g-~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~--~~~~~Y~y~i~~~ 171 (666)
.++||+|..+++ +.|+.|+|.|..|.|+ +|+++|.... ..+.+ +..-|+|++.+|.. ..+..+.+.+.
T Consensus 102 y~~~g~h~~~d~~v~~~ewaP~a~~~s~~----gd~n~W~~~~-~~~~~--k~~~g~w~i~l~~~~~~s~~v~H~s~~-- 172 (757)
T KOG0470|consen 102 YEPLGTHRTPDGRVDFTEWAPLAEAVSLI----GDFNNWNPSS-NELKP--KDDLGVWEIDLPPKVNGSGAVPHGSVS-- 172 (757)
T ss_pred ccccceeccCCCceeeeeecccccccccc----cccCCCCCcc-cccCc--ccccceeEEecCcccCCCcccccccee--
Confidence 459999998888 9999999999999999 7888887643 23322 34569999999854 44444444432
Q ss_pred cCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCCC-CCCCCeEEEEEEeCCcc
Q 005976 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-YPQRDLIIYEVHVRGFT 250 (666)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~-~~~~~~vIYei~v~~f~ 250 (666)
.....+||+..+.....|...++.+.++++..++.+++..+++|..+.+.+ .|.+++.|||+|||+|+
T Consensus 173 -----------~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS 241 (757)
T KOG0470|consen 173 -----------KIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFS 241 (757)
T ss_pred -----------EEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeecccc
Confidence 224678999888888888777777778899988888877789998776544 67679999999999999
Q ss_pred cCCCCCCCCCcchhhhhhh-hHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCcc
Q 005976 251 RHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIR 329 (666)
Q Consensus 251 ~~~~~~~~~~G~~~gi~~~-L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~ 329 (666)
.++++....+| |+++++| |++||+||+|||+||||+|+.. .+++|||.+++||+|..+|||+..
T Consensus 242 ~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~-------------~~~s~GY~~~nFFapssrYgt~~s- 306 (757)
T KOG0470|consen 242 SHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGH-------------YYASWGYQVTNFFAPSSRYGTPES- 306 (757)
T ss_pred CCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhh-------------hhhccCcceeEeecccccccCCCc-
Confidence 99988777777 9999999 9999999999999999999842 345799999999999999999655
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHH
Q 005976 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVR 409 (666)
Q Consensus 330 ~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr 409 (666)
+ .++.|||.||++||..||.||||||+||+++ ++..++..|+|+++..||+..+ ..+++++|.+.||+++|+|+
T Consensus 307 ~---~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~~fdGid~~~Yf~~~~--r~~h~~~~~r~fn~~~~~V~ 380 (757)
T KOG0470|consen 307 P---CRINEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLNMFDGIDNSVYFHSGP--RGYHNSWCSRLFNYNHPVVL 380 (757)
T ss_pred c---cchHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcchhccCcCCceEEEeCC--cccccccccccccCCCHHHH
Confidence 3 3488999999999999999999999999998 5566788899999999999988 67788889999999999999
Q ss_pred HHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHH-HHhcCCCCCCce-EEEe
Q 005976 410 QFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID-LISNDPILRGVK-LIAE 487 (666)
Q Consensus 410 ~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~i~~~~~~~~~~-liaE 487 (666)
++|+++|++||+||+|||||||.+..|-+.+.-|..- +++......-+.|+....++++. +|++++++..+. +|++
T Consensus 381 rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~--f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~ 458 (757)
T KOG0470|consen 381 RFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAG--FDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITD 458 (757)
T ss_pred HHHHHHHHHHHHheeccceEEcchhhhhhhccccccc--cCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEe
Confidence 9999999999999999999999999998766555541 22222222223455677788888 899999888888 9999
Q ss_pred eccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHH-HHHHHHhCCCccccCCCCCCcceEEecccCCCCChhH
Q 005976 488 AWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAG-AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD 566 (666)
Q Consensus 488 ~w~~~~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~-~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d 566 (666)
+|+.++++..+.+|+++.++.||..|+..++.++++...... .++.+++++...+..+.+.|+..+||+++||+..+.|
T Consensus 459 ~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d 538 (757)
T KOG0470|consen 459 AEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGD 538 (757)
T ss_pred eeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCCccccc
Confidence 999999999999999999999999999999999999877666 7889999998888888889999999999999999999
Q ss_pred HHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcCCCCCCCC
Q 005976 567 LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646 (666)
Q Consensus 567 ~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~~gn~n~y 646 (666)
+++++.+ +..++.+|||+.++...+..+.+.+..++++-+..+++.+|+||+|||||||+++.++++.|
T Consensus 539 ~~T~af~-----------~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~ 607 (757)
T KOG0470|consen 539 LVTIAFK-----------WLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRY 607 (757)
T ss_pred eeeecch-----------hhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcc
Confidence 9887655 33567899999999999888999988888888888899999999999999999999999999
Q ss_pred CCCCccccccccccc
Q 005976 647 CHDNDVNLCTLLISG 661 (666)
Q Consensus 647 ~~~~~~n~~dw~~~~ 661 (666)
+.++..+.++|++-+
T Consensus 608 ~nn~s~~~~r~~~f~ 622 (757)
T KOG0470|consen 608 GNNFSYNYARRKRFD 622 (757)
T ss_pred cCCccccccCccccc
Confidence 999999999995543
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=5.4e-66 Score=581.80 Aligned_cols=389 Identities=28% Similarity=0.457 Sum_probs=290.9
Q ss_pred EEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCCCCccccCccee
Q 005976 107 VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIV 186 (666)
Q Consensus 107 ~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g~~~~~~~~~ 186 (666)
|+||||||+|++|+|+++. ..++|. ..++|+|++++++...|.+|.|+|++. ..+
T Consensus 1 v~FrlwAP~A~~V~L~l~~----------~~~~m~---k~~~GvW~~~v~~~~~G~~Y~y~v~g~------------~~v 55 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG----------ALHAMQ---RLGDGWFEITVPPVGPGDRYGYVLDDG------------TPV 55 (542)
T ss_pred CEEEEECCCCCEEEEEeCC----------CEEeCe---ECCCCEEEEEECCCCCCCEEEEEEeee------------EEe
Confidence 5899999999999999731 246774 346799999999999999999999852 257
Q ss_pred cCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCcccCCCCCCCCCcchhhh
Q 005976 187 LDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGV 266 (666)
Q Consensus 187 ~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi 266 (666)
.||||+++... ..+ .++|.+ ...|+|+++.++..+++++|||||||++|+. .|||+||
T Consensus 56 ~DPya~~~~~~----~~~---------~S~V~d-~~~~~w~~~~~~~~~~~~~viYE~hv~~f~~--------~G~~~gi 113 (542)
T TIGR02402 56 PDPASRRQPDG----VHG---------PSQVVD-PDRYAWQDTGWRGRPLEEAVIYELHVGTFTP--------EGTFDAA 113 (542)
T ss_pred cCccccccccC----CCC---------CeEEec-CcccCCCCccccCCCccccEEEEEEhhhcCC--------CCCHHHH
Confidence 89999986311 111 234433 2469999888877889999999999999986 6999999
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
+++|+|||+||||+||||||++++. ..+|||++.+||+|+++||+ ++|||+||++|
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~--------------~~~~GY~~~~~~~~~~~~G~----------~~e~k~lV~~a 169 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPG--------------TRGWGYDGVLPYAPHNAYGG----------PDDLKALVDAA 169 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCC--------------CCCCCCCccCccccccccCC----------HHHHHHHHHHH
Confidence 9999999999999999999998753 13699999999999999998 99999999999
Q ss_pred HHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCH---HHHHHHHHHHHHHHHhC
Q 005976 347 HKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHP---VVRQFIVDCLRYWVTEM 423 (666)
Q Consensus 347 H~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p---~vr~~i~d~l~~W~~e~ 423 (666)
|++||+||||+|+||++..+...+. . .+ ||... ..++|++++|+++| +||++|++++++|+++|
T Consensus 170 H~~Gi~VilD~V~NH~~~~~~~~~~-----~-~~-y~~~~------~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 170 HGLGLGVILDVVYNHFGPEGNYLPR-----Y-AP-YFTDR------YSTPWGAAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred HHCCCEEEEEEccCCCCCccccccc-----c-Cc-cccCC------CCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999865432111 1 12 55321 23467789999999 99999999999999999
Q ss_pred CccEEEEecCCccccCC--CccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCC---ceEEEeeccCCC-cccc
Q 005976 424 HVDGFRFDLASIMTRGS--SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRG---VKLIAEAWDTGG-LYQV 497 (666)
Q Consensus 424 gIDGfR~D~a~~l~~~~--~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~---~~liaE~w~~~~-~~~~ 497 (666)
||||||||++..|.... .||.. +.+.++. +.|+ ++||||.|.... ....
T Consensus 237 ~iDGfR~D~~~~~~~~~~~~~l~~-----------------------~~~~~~~--~~p~~~~~~li~E~~~~~~~~~~~ 291 (542)
T TIGR02402 237 HFDGLRLDAVHAIADTSAKHILEE-----------------------LAREVHE--LAAELRPVHLIAESDLNDPSLVTP 291 (542)
T ss_pred CCcEEEEeCHHHhccccHHHHHHH-----------------------HHHHHHH--HCCCCceEEEEEecCCCCCccccc
Confidence 99999999999886421 24443 3334433 3344 999999985432 2111
Q ss_pred cccCCCCcccccchhHHHHHHHHHhCCC-Cc-------HHHHHHHHhCC------Ccccc-------CCCCCCcceEEec
Q 005976 498 GIFPHWGIWSEWNGKYRDIVRQFIKGTD-GF-------AGAFAECLCGS------PNLYQ-------GGGRKPWNSINFV 556 (666)
Q Consensus 498 g~~~~~~~~~~~n~~f~~~~r~~l~g~~-~~-------~~~~~~~l~~~------~~~~~-------~~~~~p~~~infv 556 (666)
......++++.||+.|++.++.+++|.. ++ ...++..|... ...+. .....+.++|||+
T Consensus 292 ~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl 371 (542)
T TIGR02402 292 REDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFI 371 (542)
T ss_pred ccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEc
Confidence 1112345789999999999999998753 22 23455544311 00110 0112457899999
Q ss_pred ccCCC---CChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccc
Q 005976 557 CAHDG---FSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGD 633 (666)
Q Consensus 557 ~nHD~---~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~Gd 633 (666)
+|||+ .++.+.+.. .+..++.++|++++||+||||||||||
T Consensus 372 ~nHD~~gn~~~~~Rl~~------------------------------------~~~~~~~~la~alllt~pGiP~Iy~Gq 415 (542)
T TIGR02402 372 QNHDQIGNRALGERLSQ------------------------------------LLSPGSLKLAAALLLLSPYTPLLFMGE 415 (542)
T ss_pred cCcccccccchhhhhhh------------------------------------cCCHHHHHHHHHHHHHcCCCceeeccH
Confidence 99995 333333321 012367889999999999999999999
Q ss_pred cccCcCC
Q 005976 634 EYGHTKG 640 (666)
Q Consensus 634 E~G~t~~ 640 (666)
|+|++++
T Consensus 416 E~g~~~~ 422 (542)
T TIGR02402 416 EYGATTP 422 (542)
T ss_pred hhcCCCC
Confidence 9999986
No 11
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2e-60 Score=540.61 Aligned_cols=450 Identities=21% Similarity=0.361 Sum_probs=305.0
Q ss_pred CCCCCeEEe----CCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcC
Q 005976 95 PTPFGATLR----DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDG 170 (666)
Q Consensus 95 ~~~lGa~~~----~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~ 170 (666)
...||||.. .+||+|+||||+|++|+|+ ++|+.|.. ...||. .+.+|+|+++||+...+..|+|+|.+
T Consensus 124 y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVv----GDFN~Wdg-~~~pM~---~~~~GVWelfipg~~~G~~YKYeI~~ 195 (730)
T PRK12568 124 RRALGAQHVQVGEVPGVRFAVWAPHAQRVAVV----GDFNGWDV-RRHPMR---QRIGGFWELFLPRVEAGARYKYAITA 195 (730)
T ss_pred HHhcCCeEeeECCCCcEEEEEECCCCCEEEEE----EecCCCCc-cceecc---cCCCCEEEEEECCCCCCCEEEEEEEc
Confidence 356999975 4589999999999999998 46666653 356774 34789999999999999999999975
Q ss_pred ccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCC-----CCCCCCCeEEEEEE
Q 005976 171 KFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLP-----LKYPQRDLIIYEVH 245 (666)
Q Consensus 171 ~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~-----~~~~~~~~vIYei~ 245 (666)
. +|.. ..+.||||+.+..+ |..+++|... ..|+|+++.+ +..+.++++|||||
T Consensus 196 ~----~G~~----~~k~DPYA~~~e~~-------------p~~asvV~~~-~~~~W~d~~W~~~r~~~~~~~~~~IYEvH 253 (730)
T PRK12568 196 A----DGRV----LLKADPVARQTELP-------------PATASVVPSA-AAFAWTDAAWMARRDPAAVPAPLSIYEVH 253 (730)
T ss_pred C----CCeE----eecCCCcceEeecC-------------CCCCeEEcCC-CCCCCCChhhhhcccccCCCCCcEEEEEE
Confidence 3 3332 35789999998533 2234555532 4688886643 23356899999999
Q ss_pred eCCcccCCCCCCCCCcchhhhhhh-hHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCC
Q 005976 246 VRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (666)
Q Consensus 246 v~~f~~~~~~~~~~~G~~~gi~~~-L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~yg 324 (666)
+++|+.+.. ...++|++++++ |+|||+||||+||||||++++. .++|||++.+||+|+++||
T Consensus 254 vgsf~~~~~---~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~--------------~~~wGY~~~~~~a~~~~~G 316 (730)
T PRK12568 254 AASWRRDGH---NQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPF--------------GGSWGYQPLGLYAPTARHG 316 (730)
T ss_pred hHHhcCCCC---CCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCC--------------CCCCCCCCCcCCccCcccC
Confidence 999997532 235799999998 5999999999999999998752 1369999999999999999
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCcccee-eCC-CCCccccCCCCccCC
Q 005976 325 SAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM-LAP-KGEFYNYSGCGNTFN 402 (666)
Q Consensus 325 t~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~-~~~-~g~~~~~~~~~~dln 402 (666)
+ ++|||+||++||++||+||||+|+||++.+.. .+..|++ ..+|. .++ .|....|.. ..||
T Consensus 317 ~----------~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~--~l~~fdg---~~~Ye~~d~~~g~~~~W~~--~~~N 379 (730)
T PRK12568 317 S----------PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH--GLAQFDG---AALYEHADPREGMHRDWNT--LIYN 379 (730)
T ss_pred C----------HHHHHHHHHHHHHCCCEEEEEeccccCCcccc--ccccCCC---ccccccCCCcCCccCCCCC--eecc
Confidence 8 99999999999999999999999999987632 1223333 33332 222 233333432 2689
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccc-----cCCCccccccccCccccCcccccCCCCCChHHHHHHhcC-
Q 005976 403 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND- 476 (666)
Q Consensus 403 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~-----~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~- 476 (666)
+.+|+||++|++++++|+++|||||||+|++..|. +....|.+ +.+|...+.+. ..|++.+...
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~p-n~~gg~en~ea---------~~Fl~~ln~~v 449 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVP-NAHGGRENLEA---------VAFLRQLNREI 449 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccc-cccCCccChHH---------HHHHHHHHHHH
Confidence 99999999999999999999999999999876653 22334544 33333222111 1244444331
Q ss_pred -CCCCCceEEEeeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEE
Q 005976 477 -PILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSIN 554 (666)
Q Consensus 477 -~~~~~~~liaE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~in 554 (666)
...|++++|||.+.... .......-..|++..||..+++.+..+++.+......-...|+.+ ..|. ......
T Consensus 450 ~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~-~~y~-----~~e~fv 523 (730)
T PRK12568 450 ASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFG-LVYA-----FSERFV 523 (730)
T ss_pred HHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhh-hhhh-----hhccEe
Confidence 25689999999754321 111111123468999998887777777776433222111111110 0110 011223
Q ss_pred ecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceecccccc
Q 005976 555 FVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDE 634 (666)
Q Consensus 555 fv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE 634 (666)
+..|||..- ..|..+... .+|. ...+.+++|++++++||+||.||||||+|
T Consensus 524 lp~SHDEvv-------hgk~sl~~k----------------mpGd------~~~k~a~lR~~~~~~~~~PGkkLlFmG~E 574 (730)
T PRK12568 524 LPLSHDEVV-------HGTGGLLGQ----------------MPGD------DWRRFANLRAYLALMWAHPGDKLLFMGAE 574 (730)
T ss_pred ccCCCcccc-------cCchhhhhc----------------CCCC------HHHHHHHHHHHHHHHHhCCCcceeeCchh
Confidence 567888731 011100000 0110 01246788999999999999999999999
Q ss_pred ccCcCCCCCCCCCCCCccccccccccc
Q 005976 635 YGHTKGGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 635 ~G~t~~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
||..+..+ .+. .+||..++
T Consensus 575 fgq~~ew~-----~~~---~ldW~ll~ 593 (730)
T PRK12568 575 FGQWADWN-----HDQ---SLDWHLLD 593 (730)
T ss_pred hCCccccc-----CCC---CccccccC
Confidence 99977543 332 47787654
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.1e-60 Score=543.06 Aligned_cols=441 Identities=23% Similarity=0.402 Sum_probs=297.9
Q ss_pred CCCCCeEEeCC----cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcC
Q 005976 95 PTPFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDG 170 (666)
Q Consensus 95 ~~~lGa~~~~~----g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~ 170 (666)
..+||||...+ ||+||||||+|++|+|+ ++|++|.. ...+|.+ ..+|+|++++++...+..|+|+|..
T Consensus 24 ~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~----gdfn~w~~-~~~~m~~---~~~Gvw~~~i~~~~~g~~Y~y~v~~ 95 (633)
T PRK12313 24 YEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVV----GDFNDWRG-NAHPLVR---RESGVWEGFIPGAKEGQLYKYHISR 95 (633)
T ss_pred hhcCCcEEeccCCcccEEEEEECCCCCEEEEE----EecCCCCc-ccccccc---cCCCEEEEEeCCCCCCCEEEEEEEC
Confidence 45799999877 89999999999999998 56666643 3456643 3679999999998899999999963
Q ss_pred ccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCC------CCCCCCeEEEEE
Q 005976 171 KFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPL------KYPQRDLIIYEV 244 (666)
Q Consensus 171 ~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~------~~~~~~~vIYei 244 (666)
. .|.. ..+.||||+.+..+. ..+++|.+. +.|.|+++.+. ..+.++++||||
T Consensus 96 ~----~g~~----~~~~DPya~~~~~~~-------------~~~s~v~d~-~~~~w~~~~~~~~~~~~~~~~~~~~iYe~ 153 (633)
T PRK12313 96 Q----DGYQ----VEKIDPFAFYFEARP-------------GTASIVWDL-PEYKWKDGLWLARRKRWNALDRPISIYEV 153 (633)
T ss_pred C----CCeE----EecCCCceEEEecCC-------------CCceEECCC-cccCCCChhhhhccccCCCCCCCceEEEE
Confidence 2 2322 246899999985431 123455442 46899877542 123478999999
Q ss_pred EeCCcccCCCCCCCCCcchhhhhhhh-HHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCC
Q 005976 245 HVRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISY 323 (666)
Q Consensus 245 ~v~~f~~~~~~~~~~~G~~~gi~~~L-~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~y 323 (666)
||++|+.++. ...|||++++++| +|||+||||+||||||++++. .++|||++.+||+|+++|
T Consensus 154 hv~~f~~~~~---~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~--------------~~~~GY~~~~y~~i~~~~ 216 (633)
T PRK12313 154 HLGSWKRNED---GRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPL--------------DGSWGYQLTGYFAPTSRY 216 (633)
T ss_pred ehhccccCCC---CCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCC--------------CCCCCCCCcCcCcCCCCC
Confidence 9999998542 2369999999995 999999999999999999753 136999999999999999
Q ss_pred CCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCC-CCccccCCCCccCC
Q 005976 324 SSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK-GEFYNYSGCGNTFN 402 (666)
Q Consensus 324 gt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~-g~~~~~~~~~~dln 402 (666)
|+ +++||+||++||++||+||||+|+||++.++.. +..+++. +.|+..++. +....|. ..+||
T Consensus 217 Gt----------~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~w~--~~~~n 280 (633)
T PRK12313 217 GT----------PEDFMYLVDALHQNGIGVILDWVPGHFPKDDDG--LAYFDGT--PLYEYQDPRRAENPDWG--ALNFD 280 (633)
T ss_pred CC----------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc--ccccCCC--cceeecCCCCCcCCCCC--CcccC
Confidence 98 999999999999999999999999999876432 1222221 122222222 2222232 36899
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccc-cCC---CccccccccCccccCcccccCCCCCChHHHHHHhcC--
Q 005976 403 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-RGS---SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND-- 476 (666)
Q Consensus 403 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~-~~~---~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~-- 476 (666)
+++|+||++|++++++|+++|||||||||++..+. .+. .-|.. +.++...+ .....+++.+.+.
T Consensus 281 ~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~-~~~~~~~~---------~~~~~fl~~~~~~v~ 350 (633)
T PRK12313 281 LGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTP-NKYGGREN---------LEAIYFLQKLNEVVY 350 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCC-cccCCCCC---------cHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999886552 211 11221 11111100 0112344444321
Q ss_pred CCCCCceEEEeeccCCCccc-ccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCccccCCCCCCcc
Q 005976 477 PILRGVKLIAEAWDTGGLYQ-VGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGRKPWN 551 (666)
Q Consensus 477 ~~~~~~~liaE~w~~~~~~~-~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~----~~~~~~l~~~~~~~~~~~~~p~~ 551 (666)
...|++++|||.|....... .......+++..||..|...+..++.....+. ..+...+.. .+. .
T Consensus 351 ~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------e 420 (633)
T PRK12313 351 LEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMY---AFS-------E 420 (633)
T ss_pred HHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhh---hhh-------c
Confidence 24679999999875332111 11112346888999888887777775432111 011111110 010 1
Q ss_pred eEEecccCCCC-----ChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCc
Q 005976 552 SINFVCAHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGV 626 (666)
Q Consensus 552 ~infv~nHD~~-----rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGi 626 (666)
..+++.+||+. |+.+.+. |+ ..-...++|++++++||+||+
T Consensus 421 ~~~l~~sHD~~~~g~~~~~~~~~---------g~-------------------------~~~~~~~~r~~~~~~~t~pG~ 466 (633)
T PRK12313 421 NFVLPFSHDEVVHGKKSLMHKMP---------GD-------------------------RWQQFANLRLLYTYMITHPGK 466 (633)
T ss_pred ccccCCCCcccccCCccHHHhcC---------CC-------------------------HHHHHHHHHHHHHHHHhCCCC
Confidence 12466899984 4333220 00 001245788999999999999
Q ss_pred eeccccccccCcCCCCCCCCCCCCcccccccccc
Q 005976 627 PMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLIS 660 (666)
Q Consensus 627 P~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~ 660 (666)
||||||+|+|+++..+. .+.++|.+.
T Consensus 467 Plif~G~E~g~~~~~~~--------~~~l~W~~~ 492 (633)
T PRK12313 467 KLLFMGSEFGQFLEWKH--------DESLEWHLL 492 (633)
T ss_pred cEeecccccccCccCCc--------cCCCCcccc
Confidence 99999999999875432 145778753
No 13
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-59 Score=536.16 Aligned_cols=431 Identities=22% Similarity=0.371 Sum_probs=292.6
Q ss_pred CCCCeEEeCC----cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCc
Q 005976 96 TPFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (666)
Q Consensus 96 ~~lGa~~~~~----g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~ 171 (666)
..||||.... |++||||||+|++|+|+ ++|+.|.. ...||.+ ..+|+|+++||+..++..|+|+|.+.
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lv----gdfn~w~~-~~~pM~~---~~~GvW~~~vpg~~~g~~Yky~I~~~ 96 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVV----GDFNDWNG-FDHPMQR---LDFGFWGAFVPGARPGQRYKFRVTGA 96 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEE----EecCCccc-ccccccc---cCCCEEEEEECCCCCCCEEEEEEECC
Confidence 4689997653 79999999999999998 45666543 3456653 35699999999999999999999864
Q ss_pred cCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCCC--CC--CCCeEEEEEEeC
Q 005976 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK--YP--QRDLIIYEVHVR 247 (666)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~--~~--~~~~vIYei~v~ 247 (666)
+|.. ..+.||||+.+..+. ..+++|.. ..|+|+++.+.. .+ .++++||||||+
T Consensus 97 ----~g~~----~~~~DPYa~~~~~~~-------------~~~svv~~--~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg 153 (639)
T PRK14706 97 ----AGQT----VDKMDPYGSFFEVRP-------------NTASIIWE--DRFEWTDTRWMSSRTAGFDQPISIYEVHVG 153 (639)
T ss_pred ----CCCE----EeccCcceEEEecCC-------------CCceEECC--CCCCCCCcccccccCCccCCCcEEEEEehh
Confidence 2322 246899999985431 23455543 359998776532 12 356999999999
Q ss_pred CcccCCCCCCCCCcchhhhhhhh-HHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCC
Q 005976 248 GFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSA 326 (666)
Q Consensus 248 ~f~~~~~~~~~~~G~~~gi~~~L-~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~ 326 (666)
+|+.... ...|+|++++++| +|||+||||+|+||||++++. .++|||++.+||+|+++||+
T Consensus 154 ~f~~~~~---g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~--------------~~~wGY~~~~~~~~~~~~g~- 215 (639)
T PRK14706 154 SWARRDD---GWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPF--------------DGSWGYQVTGYYAPTSRLGT- 215 (639)
T ss_pred hcccCCC---CCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCC--------------CCCCCcCcccccccccccCC-
Confidence 9986431 1258999999997 999999999999999999753 23699999999999999998
Q ss_pred CccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccce-eeCC-CCCccccCCCCccCCCC
Q 005976 327 GIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY-MLAP-KGEFYNYSGCGNTFNCN 404 (666)
Q Consensus 327 ~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y-~~~~-~g~~~~~~~~~~dln~~ 404 (666)
++|||+||++||++||+||||+|+||++.+... +..+++ ..+| ..++ .|....|.. ..+|+.
T Consensus 216 ---------~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~--l~~~dg---~~~y~~~~~~~g~~~~w~~--~~~~~~ 279 (639)
T PRK14706 216 ---------PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG--LAHFDG---GPLYEYADPRKGYHYDWNT--YIFDYG 279 (639)
T ss_pred ---------HHHHHHHHHHHHHCCCEEEEEecccccCcchhh--hhccCC---CcceeccCCcCCcCCCCCC--cccCCC
Confidence 999999999999999999999999999875321 223332 3333 2222 233334432 258999
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc-C--CCccccccccCccccCcccccCCCCCChHHHHHHhcC--CCC
Q 005976 405 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-G--SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND--PIL 479 (666)
Q Consensus 405 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~-~--~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~--~~~ 479 (666)
+|+||++|++++++|++||||||||||++..|.. + ...|.+ +.+|+..+.+. ..+++.+... ...
T Consensus 280 ~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~-~~~gg~~n~~a---------~~fl~~ln~~v~~~~ 349 (639)
T PRK14706 280 RNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVP-NIHGGRENLEA---------IAFLKRLNEVTHHMA 349 (639)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccc-cccCCcccHHH---------HHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999877632 1 111322 33333222111 1244444331 245
Q ss_pred CCceEEEeeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEeccc
Q 005976 480 RGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCA 558 (666)
Q Consensus 480 ~~~~liaE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~n 558 (666)
|++++|||.|..-. +..... ...|+++.||..|.+.+..++..+..........+..+ ..|. ...+.| |++|
T Consensus 350 p~~~~iAE~~~~~~~v~~~~~-~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~-~~y~----~~e~~i-l~~S 422 (639)
T PRK14706 350 PGCMMIAEESTSFPGVTVPTP-YGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFF-NVYR----TSENYV-LAIS 422 (639)
T ss_pred CCeEEEEECCCCCcCcccccC-CCCccccEeccHHHHHHHHHhccCchhhhhchhccchh-hhhh----ccccEe-cCCC
Confidence 78999999986432 211111 25679999998888776666653322211101111100 1111 111223 7899
Q ss_pred CCCCChhH--HHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceecccccccc
Q 005976 559 HDGFSLAD--LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYG 636 (666)
Q Consensus 559 HD~~rl~d--~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G 636 (666)
||+.+..+ ++. ...|. ...+.+++|++++++||+||+||||||+|||
T Consensus 423 HDev~~~k~sl~~------k~~g~-------------------------~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG 471 (639)
T PRK14706 423 HDEVVHLKKSMVM------KMPGD-------------------------WYTQRAQYRAFLAMMWTTPGKKLLFMGQEFA 471 (639)
T ss_pred CccccCCccchHh------HcCCC-------------------------HHHHHHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 99876321 110 00010 0123567899999999999999999999999
Q ss_pred CcC
Q 005976 637 HTK 639 (666)
Q Consensus 637 ~t~ 639 (666)
..+
T Consensus 472 ~~~ 474 (639)
T PRK14706 472 QGT 474 (639)
T ss_pred CCC
Confidence 744
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=7.5e-60 Score=540.08 Aligned_cols=440 Identities=23% Similarity=0.400 Sum_probs=290.5
Q ss_pred CCCCeEEeC----CcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCc
Q 005976 96 TPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (666)
Q Consensus 96 ~~lGa~~~~----~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~ 171 (666)
..||||... +|++||||||+|++|+|++ +++.+.. ...+|.+. ..+|+|+++|++...+..|+|+|...
T Consensus 15 ~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~----dfn~w~~-~~~~m~~~--~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 87 (613)
T TIGR01515 15 ELLGSHYMELDGVSGTRFCVWAPNAREVRVAG----DFNYWDG-REHPMRRR--NDNGIWELFIPGIGEGELYKYEIVTN 87 (613)
T ss_pred HhcCceEeccCCcCcEEEEEECCCCCEEEEEE----ecCCCCC-ceecceEe--cCCCEEEEEeCCCCCCCEEEEEEECC
Confidence 469999987 7999999999999999984 4444432 33566432 24699999999999999999999742
Q ss_pred cCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCC-----CCCCCC-CCeEEEEEE
Q 005976 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDL-----PLKYPQ-RDLIIYEVH 245 (666)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~-----~~~~~~-~~~vIYei~ 245 (666)
+|. ...+.||||+.+..+. ..+++|.+ .+.|.|.+.. ++..|. ++++|||+|
T Consensus 88 ----~g~----~~~~~DPYA~~~~~~~-------------~~~s~v~d-~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~h 145 (613)
T TIGR01515 88 ----NGE----IRLKADPYAFYAEVRP-------------NTASLVYD-LEGYSWQDQKWQEKRKAKTPYEKPVSIYELH 145 (613)
T ss_pred ----CCc----EEEeCCCCEeeeccCC-------------CCcEEEEC-CccCccCchhhhhcccccCcccCCceEEEEe
Confidence 221 2357999999885331 12344443 2457665433 233344 478999999
Q ss_pred eCCcccCCCCCCCCCcchhhhhhhh-HHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCC
Q 005976 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (666)
Q Consensus 246 v~~f~~~~~~~~~~~G~~~gi~~~L-~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~yg 324 (666)
|++|+. .|||++|+++| +|||+||||+||||||++++. .++|||++.+||+|+++||
T Consensus 146 v~~~~~--------~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~--------------~~~wGY~~~~y~~~~~~~G 203 (613)
T TIGR01515 146 LGSWRH--------GLSYRELADQLIPYVKELGFTHIELLPVAEHPF--------------DGSWGYQVTGYYAPTSRFG 203 (613)
T ss_pred hhhccC--------CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCC--------------CCCCCCCcccCcccccccC
Confidence 999975 49999999997 999999999999999999753 1369999999999999999
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCC-CCccccCCCCccCCC
Q 005976 325 SAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK-GEFYNYSGCGNTFNC 403 (666)
Q Consensus 325 t~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~-g~~~~~~~~~~dln~ 403 (666)
+ ++|||+||++||++||+||||+|+||++.++.. +..+.+. +.|+..++. +....| + .++||+
T Consensus 204 t----------~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~~--~~y~~~~~~~~~~~~w-~-~~~~~~ 267 (613)
T TIGR01515 204 T----------PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG--LAEFDGT--PLYEHKDPRDGEHWDW-G-TLIFDY 267 (613)
T ss_pred C----------HHHHHHHHHHHHHCCCEEEEEecccCcCCccch--hhccCCC--cceeccCCccCcCCCC-C-CceecC
Confidence 8 899999999999999999999999999875421 2223221 223333222 222222 2 368999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc-----CCCccccccccCccccCcccccCCCCCChHHHHHHhcC--
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-----GSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND-- 476 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~-----~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~-- 476 (666)
++|+||++|++++++|+++|||||||||++..+.. +...|.. +.++.. .......+++.+...
T Consensus 268 ~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~fl~~~~~~v~ 337 (613)
T TIGR01515 268 GRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSP-NEDGGR---------ENLEAVDFLRKLNQTVY 337 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccc-cccCCc---------CChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865531 1222322 111100 001112344444331
Q ss_pred CCCCCceEEEeeccCCCccc-ccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEe
Q 005976 477 PILRGVKLIAEAWDTGGLYQ-VGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINF 555 (666)
Q Consensus 477 ~~~~~~~liaE~w~~~~~~~-~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~inf 555 (666)
...|++++|||.+....... ....-..++++.||..|...++.++... .....+..........+. .. ....+
T Consensus 338 ~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~-e~~~~ 411 (613)
T TIGR01515 338 EAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTD-PVERQYHHQLITFSMLYA----FS-ENFVL 411 (613)
T ss_pred HHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhC-hhhHhhccccccHHHHHH----hh-hcccc
Confidence 24689999999864331111 0011134688999988888877776432 122221100000000000 00 11236
Q ss_pred cccCCCC-----ChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceecc
Q 005976 556 VCAHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMIS 630 (666)
Q Consensus 556 v~nHD~~-----rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy 630 (666)
+++||+. |+...+ .|+. .-..+++|++++++||+||+||||
T Consensus 412 ~~sHD~~~~g~~~i~~~~---------~g~~-------------------------~~~~~~~r~~~~~~~t~pG~plif 457 (613)
T TIGR01515 412 PLSHDEVVHGKKSLLNKM---------PGDY-------------------------WQKFANYRALLGYMWAHPGKKLLF 457 (613)
T ss_pred CCCCCCcccCcccHHHhC---------CCch-------------------------HHHHHHHHHHHHHHHhCCCCCEEE
Confidence 7889983 332211 1100 002457888999999999999999
Q ss_pred ccccccCcCCCCCCCCCCCCcccccccccc
Q 005976 631 MGDEYGHTKGGNNNTYCHDNDVNLCTLLIS 660 (666)
Q Consensus 631 ~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~ 660 (666)
||+|+|+.+..+. ...++|.+.
T Consensus 458 ~G~E~g~~~~~~~--------~~~l~W~~~ 479 (613)
T TIGR01515 458 MGSEFAQGSEWND--------TEQLDWHLL 479 (613)
T ss_pred cchhcCcCCCCCC--------CccCCCccc
Confidence 9999999765321 245778653
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-59 Score=548.02 Aligned_cols=444 Identities=23% Similarity=0.391 Sum_probs=296.2
Q ss_pred CCCCCCeEEeC----CcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEc
Q 005976 94 YPTPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (666)
Q Consensus 94 ~~~~lGa~~~~----~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~ 169 (666)
-...||||... +||+||||||+|++|+|++ +|+.|.. ...+|.+. ..+|+|+++||+...+..|+|++.
T Consensus 116 ~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~g----dfn~w~~-~~~~m~~~--~~~Gvw~~~i~~~~~g~~Y~y~v~ 188 (726)
T PRK05402 116 LYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVG----DFNGWDG-RRHPMRLR--GESGVWELFIPGLGEGELYKFEIL 188 (726)
T ss_pred hhhccccEEeccCCCCcEEEEEECCCCCEEEEEE----EcCCCCC-ccccceEc--CCCCEEEEEeCCCCCCCEEEEEEe
Confidence 45789999885 7999999999999999994 5555542 23566432 257999999999999999999997
Q ss_pred CccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCCC------CCCCCeEEEE
Q 005976 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK------YPQRDLIIYE 243 (666)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~------~~~~~~vIYe 243 (666)
.. .|... .+.||||+++..+. ..+++|.+ .+.|+|+++.+.. +..++++|||
T Consensus 189 ~~----~g~~~----~~~DPYa~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe 246 (726)
T PRK05402 189 TA----DGELL----LKADPYAFAAEVRP-------------ATASIVAD-LSQYQWNDAAWMEKRAKRNPLDAPISIYE 246 (726)
T ss_pred CC----CCcEe----ecCCCceEEEecCC-------------CCcEEEeC-CccCCCCCcchhhcccccCcccCCcEEEE
Confidence 43 33322 36899999996441 22455544 3579998776541 2357899999
Q ss_pred EEeCCcccCCCCCCCCCcchhhhhhhh-HHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCC
Q 005976 244 VHVRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMIS 322 (666)
Q Consensus 244 i~v~~f~~~~~~~~~~~G~~~gi~~~L-~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ 322 (666)
|||++|+.+. .....|||++|+++| +|||+||||+||||||++++. ..+|||++.+||+|+++
T Consensus 247 ~hv~~f~~~~--~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~--------------~~~~GY~~~~y~ai~~~ 310 (726)
T PRK05402 247 VHLGSWRRHE--DGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPF--------------DGSWGYQPTGYYAPTSR 310 (726)
T ss_pred EehhhhccCC--CCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCC--------------CCCCCCCcccCCCcCcc
Confidence 9999999752 223468999999996 999999999999999999753 13699999999999999
Q ss_pred CCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCC-CCCccccCCCCccC
Q 005976 323 YSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-KGEFYNYSGCGNTF 401 (666)
Q Consensus 323 ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~~~~~~~~~~dl 401 (666)
||+ ++|||+||++||++||+||||+|+||++.++.. +..+++. +.|+..++ .+.+..|.. ..|
T Consensus 311 ~Gt----------~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~~--~~y~~~~~~~~~~~~w~~--~~~ 374 (726)
T PRK05402 311 FGT----------PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG--LARFDGT--ALYEHADPREGEHPDWGT--LIF 374 (726)
T ss_pred cCC----------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc--hhccCCC--cceeccCCcCCccCCCCC--ccc
Confidence 998 999999999999999999999999999765421 2223321 22222222 233444443 378
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc-----CCCccccccccCccccCcccccCCCCCChHHHHHHhcC
Q 005976 402 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-----GSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 476 (666)
Q Consensus 402 n~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~-----~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~ 476 (666)
|+.+|+||++|++++++|+++|||||||||++..+.. ....|.+ +.++...+ .....+++.+.+.
T Consensus 375 n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~-~~~~~~~~---------~~~~~fl~~~~~~ 444 (726)
T PRK05402 375 NYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIP-NIYGGREN---------LEAIDFLRELNAV 444 (726)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccccc-ccccCcCC---------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765531 1122322 11111100 0011244444321
Q ss_pred --CCCCCceEEEeeccCCCc-ccccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCccccCCCCCC
Q 005976 477 --PILRGVKLIAEAWDTGGL-YQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGRKP 549 (666)
Q Consensus 477 --~~~~~~~liaE~w~~~~~-~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~----~~~~~~l~~~~~~~~~~~~~p 549 (666)
...|++++|||.+..... .........+++..||..|++.+..++....... ..+...+.. .|.
T Consensus 445 ~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~------ 515 (726)
T PRK05402 445 VHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY---AYS------ 515 (726)
T ss_pred HHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH---hhh------
Confidence 246799999996532211 1110111235778898777665555543221110 001000100 010
Q ss_pred cceEEecccCCCCC-----hhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 005976 550 WNSINFVCAHDGFS-----LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ 624 (666)
Q Consensus 550 ~~~infv~nHD~~r-----l~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~p 624 (666)
...+++.|||+.+ +.+.+. | + ..-..+++|++++++||+|
T Consensus 516 -e~~~l~~sHD~~~~g~~~l~~~~~---------g-----------------~--------~~~~~~~lrl~~~~~~t~p 560 (726)
T PRK05402 516 -ENFVLPLSHDEVVHGKGSLLGKMP---------G-----------------D--------DWQKFANLRAYYGYMWAHP 560 (726)
T ss_pred -ccccCCCCCceeeeCcccHHhhCC---------C-----------------C--------HHHHHHHHHHHHHHHHHCC
Confidence 1124678999853 222110 0 0 0113567889999999999
Q ss_pred CceeccccccccCcCCCCCCCCCCCCcccccccccc
Q 005976 625 GVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLIS 660 (666)
Q Consensus 625 GiP~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~ 660 (666)
|+||||||||+|+++..+ +.+.++|.+.
T Consensus 561 G~Plif~G~E~g~~~~~~--------~~~~l~W~~~ 588 (726)
T PRK05402 561 GKKLLFMGGEFGQGREWN--------HDASLDWHLL 588 (726)
T ss_pred CcCEeeCchhcCCCCCCC--------ccCcCCcccc
Confidence 999999999999997542 2356778654
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.8e-58 Score=543.58 Aligned_cols=439 Identities=22% Similarity=0.385 Sum_probs=297.6
Q ss_pred CCCCeEEeC--------CcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEE
Q 005976 96 TPFGATLRD--------GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYK 167 (666)
Q Consensus 96 ~~lGa~~~~--------~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~ 167 (666)
..||||... +||+|+||||+|++|+|+ ++||.|.. ...+|.+ ...+|+|+++||+...|..|+|+
T Consensus 621 ~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vv----gdFN~w~~-~~~~m~~--~~~~GvW~~fipg~~~G~~Yky~ 693 (1224)
T PRK14705 621 DVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVK----GDFNGWDG-REHSMRS--LGSSGVWELFIPGVVAGACYKFE 693 (1224)
T ss_pred HhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEE----EEecCCCC-CcccceE--CCCCCEEEEEECCCCCCCEEEEE
Confidence 359999742 489999999999999999 45666543 3356653 23579999999999999999999
Q ss_pred EcCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCC-----CCC-CCCeEE
Q 005976 168 FDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPL-----KYP-QRDLII 241 (666)
Q Consensus 168 i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~-----~~~-~~~~vI 241 (666)
|.+. .|.. ..+.||||+.+..+ |..+++|.+. .|.|+++.+. ..+ .++++|
T Consensus 694 i~~~----~g~~----~~k~DPyA~~~e~~-------------p~~aS~V~d~--~~~w~d~~W~~~r~~~~~~~~p~~I 750 (1224)
T PRK14705 694 ILTK----AGQW----VEKADPLAFGTEVP-------------PLTASRVVEA--SYAFKDAEWMSARAERDPHNSPMSV 750 (1224)
T ss_pred EEcC----CCcE----EecCCccccccccC-------------CCCCeEEeCC--CCCcCChhhhhccccCCCCcCCcEE
Confidence 9864 3433 24679999977432 2234566543 4888876443 223 478999
Q ss_pred EEEEeCCcccCCCCCCCCCcchhhhhhh-hHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcC
Q 005976 242 YEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM 320 (666)
Q Consensus 242 Yei~v~~f~~~~~~~~~~~G~~~gi~~~-L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d 320 (666)
||+|+++|+. .|+|++++++ |+|||+||||+||||||++++. .++|||++.+||+|+
T Consensus 751 YEvHvgsf~~--------~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~--------------~~swGY~~~~y~ap~ 808 (1224)
T PRK14705 751 YEVHLGSWRL--------GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPF--------------GGSWGYQVTSYFAPT 808 (1224)
T ss_pred EEEEeccccc--------CCchHHHHHHHHHHHHHhCCCEEEECccccCCC--------------CCCCCCCccccCCcC
Confidence 9999999986 4789999988 5999999999999999999763 147999999999999
Q ss_pred CCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCC-CCCccccCCCCc
Q 005976 321 ISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-KGEFYNYSGCGN 399 (666)
Q Consensus 321 ~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~~~~~~~~~~ 399 (666)
++||+ ++|||+||++||++||+||||+|+||++.+. ++ +..+++. ..|+..++ .|....|. ..
T Consensus 809 ~ryGt----------~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~-l~~fdg~--~~y~~~d~~~g~~~~Wg--~~ 872 (1224)
T PRK14705 809 SRFGH----------PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WA-LAQFDGQ--PLYEHADPALGEHPDWG--TL 872 (1224)
T ss_pred cccCC----------HHHHHHHHHHHHHCCCEEEEEeccccCCcch-hh-hhhcCCC--cccccCCcccCCCCCCC--Cc
Confidence 99998 9999999999999999999999999997653 21 2233331 22333333 24433342 24
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccc-----cCCCccccccccCccccCcccccCCCCCChHHHHHHh
Q 005976 400 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 474 (666)
Q Consensus 400 dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~-----~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 474 (666)
.||+++++||++|+++++||+++|||||||||++..|. +....|.+ +.+|...+.+.+ .|++.+.
T Consensus 873 ~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~p-n~~gg~en~~ai---------~fl~~ln 942 (1224)
T PRK14705 873 IFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRP-NRFGGRENLEAI---------SFLQEVN 942 (1224)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccc-cccCCccChHHH---------HHHHHHH
Confidence 69999999999999999999999999999999987763 23455755 555554333222 2444443
Q ss_pred cC--CCCCCceEEEeeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCccccCCCC
Q 005976 475 ND--PILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGR 547 (666)
Q Consensus 475 ~~--~~~~~~~liaE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~----~~~~~~l~~~~~~~~~~~~ 547 (666)
.. ...|++++|||.+.... ....-..-..|++..||..|++.+..++..+.... ..+...+.. .|.
T Consensus 943 ~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~y---a~~---- 1015 (1224)
T PRK14705 943 ATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVY---AFT---- 1015 (1224)
T ss_pred HHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHH---Hhh----
Confidence 31 14679999999876432 11111122457999999888775555544332111 111111110 010
Q ss_pred CCcceEEecccCCCCCh--hHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 005976 548 KPWNSINFVCAHDGFSL--ADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 625 (666)
Q Consensus 548 ~p~~~infv~nHD~~rl--~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pG 625 (666)
....+..+||...- .+++. ...| . .-.....+|++++++|++||
T Consensus 1016 ---e~fvl~~SHDevvhgk~sl~~------km~G------d-------------------~~~k~a~lR~~~a~~~~~PG 1061 (1224)
T PRK14705 1016 ---ENFLLPISHDEVVHGKGSMLR------KMPG------D-------------------RWQQLANLRAFLAYQWAHPG 1061 (1224)
T ss_pred ---cCEecccccccccccchhHHH------hCCC------c-------------------HHHHHHHHHHHHHHHHhcCC
Confidence 11123446775310 00000 0000 0 01134567889999999999
Q ss_pred ceeccccccccCcCCCCCCCCCCCCccccccccccc
Q 005976 626 VPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 626 iP~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
+||||||+|||..+..+ +...+||...+
T Consensus 1062 k~LlFMG~Efgq~~ew~--------~~~~LdW~ll~ 1089 (1224)
T PRK14705 1062 KQLIFMGTEFGQEAEWS--------EQHGLDWFLAD 1089 (1224)
T ss_pred cCEEECccccCCCCCcc--------ccccCCCcccC
Confidence 99999999999987532 22347887754
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=5.2e-55 Score=497.19 Aligned_cols=473 Identities=21% Similarity=0.301 Sum_probs=311.1
Q ss_pred CCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcC------CCCCceEEEEE
Q 005976 95 PTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG------DFKDMLYGYKF 168 (666)
Q Consensus 95 ~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~------~~~~~~Y~y~i 168 (666)
...|||++.++|++||||||+|++|+|+ ++|++|.. ...+|.+ .+.|+|+++||+ ..+|..|+|+|
T Consensus 104 y~~lGa~~~~~g~~FrvWAP~A~~V~Lv----GdFN~W~~-~~~~M~~---~~~GvWe~~ip~~~g~~~~~~G~~Yky~i 175 (758)
T PLN02447 104 YEKFGFNRSEGGITYREWAPGAKAAALI----GDFNNWNP-NAHWMTK---NEFGVWEIFLPDADGSPAIPHGSRVKIRM 175 (758)
T ss_pred HHhceeEEecCCEEEEEECCCCCEEEEE----EecCCCCC-CccCcee---CCCCEEEEEECCccccccCCCCCEEEEEE
Confidence 4679999999999999999999999998 67777753 3456643 467999999998 77899999999
Q ss_pred cCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCC--CCCCCCCCCCCCCCCCCeEEEEEEe
Q 005976 169 DGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--DEFDWEGDLPLKYPQRDLIIYEVHV 246 (666)
Q Consensus 169 ~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~W~~~~~~~~~~~~~vIYei~v 246 (666)
... +|.. ....||||+.+..+. . ..-++.++++.+.. ..|.|+++.+. ..++++|||+||
T Consensus 176 ~~~----~g~~----~~r~dpya~~~~~~p-------~-~~~~~~~svv~dp~~~~~y~w~~~~~~--~~~~~~IYE~Hv 237 (758)
T PLN02447 176 ETP----DGRW----VDRIPAWIKYAVQAP-------G-EIGAPYNGVYWDPPEEEKYVFKHPRPP--RPAALRIYEAHV 237 (758)
T ss_pred EeC----CCcE----EeecCchHheeeccC-------C-ccCCCCceEEeCCCCCCCCCCCCCCCC--CCCCCEEEEEeC
Confidence 753 2322 246899999775431 0 00012345555432 35999976543 346799999999
Q ss_pred CCcccCCCCCCCCCcchhhhhh-hhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 247 RGFTRHESSKTEHPGTYLGVVE-KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 247 ~~f~~~~~~~~~~~G~~~gi~~-~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
+.|+.. ...|+|+++++ +|+|||+||||+||||||++++. ..+|||++.+||+|+++||+
T Consensus 238 g~~~~~-----~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~--------------~~~wGY~~~~~fa~~~~~Gt 298 (758)
T PLN02447 238 GMSSEE-----PKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAY--------------YGSFGYHVTNFFAVSSRSGT 298 (758)
T ss_pred CcccCC-----CCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCC--------------CCCCCcCcccCcccccccCC
Confidence 988532 23689999865 58999999999999999999752 24699999999999999998
Q ss_pred CCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCC
Q 005976 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNH 405 (666)
Q Consensus 326 ~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~ 405 (666)
++|||+||++||++||+||||+|+||++.....+ +..+++.. ..||...+.|....| + ...+|+++
T Consensus 299 ----------p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~g-l~~fDg~~-~~Yf~~~~~g~~~~w-~-~~~~N~~~ 364 (758)
T PLN02447 299 ----------PEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDG-LNGFDGTD-GSYFHSGPRGYHWLW-D-SRLFNYGN 364 (758)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEEEecccccccccccc-ccccCCCC-ccccccCCCCCcCcC-C-CceecCCC
Confidence 8999999999999999999999999998764322 33455433 345554444432222 2 23699999
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEecCCcccc-----CCCcccccc-ccCccccCcccccCCCCCChHHHHHHhc--CC
Q 005976 406 PVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-----GSSLWDSVN-VYGIPIEGDLLTTGTPLRSPPLIDLISN--DP 477 (666)
Q Consensus 406 p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~-----~~~~W~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~i~~--~~ 477 (666)
++||++|++++++|++||||||||||++..|.. ..+|+...+ .+|...+.+++ .++..+.. ..
T Consensus 365 ~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~---------~fL~~~N~~i~~ 435 (758)
T PLN02447 365 WEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAV---------VYLMLANDLLHG 435 (758)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHH---------HHHHHHHHHHHH
Confidence 999999999999999999999999999988842 123333221 12322222222 12332222 12
Q ss_pred CCCCceEEEeeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCC---CcHHHHHHHHhCCCccccCCCCCCcceE
Q 005976 478 ILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD---GFAGAFAECLCGSPNLYQGGGRKPWNSI 553 (666)
Q Consensus 478 ~~~~~~liaE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~---~~~~~~~~~l~~~~~~~~~~~~~p~~~i 553 (666)
..|++++|||.+.... +...-.--..|++..|+..+.+....+++... -....+...|... +...+.|
T Consensus 436 ~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r--------~~~E~~I 507 (758)
T PLN02447 436 LYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNR--------RYTEKCV 507 (758)
T ss_pred hCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcc--------cccCceE
Confidence 5689999999865432 11111112357899999888888777776632 2344555555321 1235889
Q ss_pred EecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCc-eecccc
Q 005976 554 NFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGV-PMISMG 632 (666)
Q Consensus 554 nfv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGi-P~Iy~G 632 (666)
.|.++||+....+. .++.. ..|++... ...+. ...+....+ .....|++.+++|++||. +++|||
T Consensus 508 ~y~eSHDevv~Gkk-------sl~~~--l~d~~my~--~m~~~--~~~~~~~~R-~~~lhkmirl~~~~~pG~g~L~FMG 573 (758)
T PLN02447 508 AYAESHDQALVGDK-------TIAFW--LMDKEMYD--GMSTL--TPATPVVDR-GIALHKMIRLITMALGGEGYLNFMG 573 (758)
T ss_pred eccCCcCeeecCcc-------hhHhh--hcchhhhh--cCCCC--hhhhhhHHH-HHHHHHHHHHHHHhCCCCcceeecc
Confidence 99999999643221 00000 00000000 00000 001111111 112234455679999999 799999
Q ss_pred ccccCcC------CCCCCCCCCCCccccccccccc
Q 005976 633 DEYGHTK------GGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 633 dE~G~t~------~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
+|||... .+|+.+|.. ..++|.+.+
T Consensus 574 nEFg~~ew~Dfpr~~n~ws~~~----~~~~W~L~d 604 (758)
T PLN02447 574 NEFGHPEWIDFPREGNGWSYDK----CRRRWDLAD 604 (758)
T ss_pred cccCCchhccCcccccccCccc----ccCCccccC
Confidence 9999962 344444321 236777654
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-55 Score=487.79 Aligned_cols=433 Identities=26% Similarity=0.426 Sum_probs=295.4
Q ss_pred CCCCCCCeEEeCC---cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEc
Q 005976 93 GYPTPFGATLRDG---GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (666)
Q Consensus 93 g~~~~lGa~~~~~---g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~ 169 (666)
....++||+.... ||+|+||||+|..|.|+ ++|++|.. ...+|. ..++.|+|+++||+...|..|+|+|.
T Consensus 21 ~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vv----gdfn~w~~-~~~~~~--~~~~~G~we~~vp~~~~G~~Yky~l~ 93 (628)
T COG0296 21 RLYEKLGAHPIENGVSGVRFRVWAPNARRVSLV----GDFNDWDG-RRMPMR--DRKESGIWELFVPGAPPGTRYKYELI 93 (628)
T ss_pred hhHhhhCcccccCCCCceEEEEECCCCCeEEEE----eecCCccc-eecccc--cCCCCceEEEeccCCCCCCeEEEEEe
Confidence 3456788887643 59999999999999999 67777653 334442 22366999999999999999999998
Q ss_pred CccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCC----CCCCCCCCCCCeEEEEEE
Q 005976 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWE----GDLPLKYPQRDLIIYEVH 245 (666)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~----~~~~~~~~~~~~vIYei~ 245 (666)
+. .|+. ..+.||||+....+ |..+++|.+. ..|.|+ ...+...++++++|||||
T Consensus 94 ~~----~g~~----~~~~DP~a~~~~~~-------------p~~aS~v~~~-~~y~W~d~~~~~~~~~~~~e~~vIYElH 151 (628)
T COG0296 94 DP----SGQL----RLKADPYARRQEVG-------------PHTASQVVDL-PDYEWQDERWDRAWRGRFWEPIVIYELH 151 (628)
T ss_pred CC----CCce----eeccCchhhccCCC-------------CCCcceecCC-CCcccccccccccccCCCCCCceEEEEE
Confidence 65 3432 46899999976322 3345566543 359998 445556678999999999
Q ss_pred eCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 246 VRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 246 v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
+.+|+. + ...|+++..+++|+|||+||||||+||||.|++.. .+|||+++.||+|.++||+
T Consensus 152 vGs~~~----~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~--------------~sWGYq~~g~yAp~sryGt 212 (628)
T COG0296 152 VGSFTP----D-RFLGYFELAIELLPYLKELGITHIELMPVAEHPGD--------------RSWGYQGTGYYAPTSRYGT 212 (628)
T ss_pred eeeccC----C-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCC--------------CCCCCCcceeccccccCCC
Confidence 999987 2 55799999999999999999999999999998742 3699999999999999998
Q ss_pred CCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeC-C-CCCccccCCCCc-cCC
Q 005976 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA-P-KGEFYNYSGCGN-TFN 402 (666)
Q Consensus 326 ~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~-~-~g~~~~~~~~~~-dln 402 (666)
+++||.||++||++||.||||+|+||++.+.. .+..|++ ..+|... + .|... .++. .+|
T Consensus 213 ----------Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~--~L~~fdg---~~~~e~~~~~~~~~~---~Wg~~i~~ 274 (628)
T COG0296 213 ----------PEDFKALVDAAHQAGIGVILDWVPNHFPPDGN--YLARFDG---TFLYEHEDPRRGEHT---DWGTAIFN 274 (628)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc--hhhhcCC---ccccccCCcccccCC---Ccccchhc
Confidence 99999999999999999999999999987432 1223333 3333322 1 12211 2222 345
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCC-----CccccccccCccccCcccccCCCCCChHHHHHHhc--
Q 005976 403 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS-----SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN-- 475 (666)
Q Consensus 403 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~-----~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~-- 475 (666)
+++++||+||++++.||+++|||||+|+||+..|.... ..|.. +.+|+..+ ...++-+.+
T Consensus 275 ~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~-n~~ggr~n------------~~a~efl~~~n 341 (628)
T COG0296 275 YGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVP-NEYGGREN------------LEAAEFLRNLN 341 (628)
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccc-cccCCccc------------HHHHHHhhhhh
Confidence 66999999999999999999999999999998886421 12322 33322211 112222222
Q ss_pred ---CCCCCCceEEEeeccCCCcccccc-cCCCCcccccchh-HHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCc
Q 005976 476 ---DPILRGVKLIAEAWDTGGLYQVGI-FPHWGIWSEWNGK-YRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPW 550 (666)
Q Consensus 476 ---~~~~~~~~liaE~w~~~~~~~~g~-~~~~~~~~~~n~~-f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~ 550 (666)
....|+++.|+|.|........-. .-..++...||.. ++|.+..+.+-.. + .. .-.+.... .....+.
T Consensus 342 ~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~-~-r~---~~h~~~tf--~~~y~~s 414 (628)
T COG0296 342 SLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPV-Y-RK---YHHGELTF--GLLYAFS 414 (628)
T ss_pred hhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCcc-c-cc---cccCCCcc--ccccccc
Confidence 124678899999997653211111 1122355566644 5566555543211 0 00 00011000 0001345
Q ss_pred ceEEecccCCCC--ChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCcee
Q 005976 551 NSINFVCAHDGF--SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPM 628 (666)
Q Consensus 551 ~~infv~nHD~~--rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~ 628 (666)
..++|+.|||.. .- .+.++.+. .......+.+|+++++++.+||+|+
T Consensus 415 e~~~l~~sHDevvhGk-----------~sl~~rm~--------------------g~~~~~~a~lr~~~a~~~~~Pgk~L 463 (628)
T COG0296 415 ENVVLPLSHDEVVHGK-----------RSLGERMP--------------------GDAWQKFANLRALAAYMWLHPGKPL 463 (628)
T ss_pred eeEeccccccceeecc-----------cchhccCC--------------------cchhhhHHHHHHHHHHHHhCCCcee
Confidence 778899999985 21 11111110 0112357889999999999999999
Q ss_pred ccccccccCcCCCC
Q 005976 629 ISMGDEYGHTKGGN 642 (666)
Q Consensus 629 Iy~GdE~G~t~~gn 642 (666)
||||+|||.+...+
T Consensus 464 LFMG~Efgq~~e~~ 477 (628)
T COG0296 464 LFMGEEFGQGREWN 477 (628)
T ss_pred eecchhhccCCCCc
Confidence 99999999988764
No 19
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=3.1e-55 Score=500.72 Aligned_cols=413 Identities=18% Similarity=0.220 Sum_probs=279.4
Q ss_pred CCCCeEEeCCcEEEEEEcCCC---CeEEEEEEeCCCCcCCccceeeecccccCC-CCCEEEEEEcCC--CCCceEEEEEc
Q 005976 96 TPFGATLRDGGVNFSIFSSNA---VSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGD--FKDMLYGYKFD 169 (666)
Q Consensus 96 ~~lGa~~~~~g~~F~vwap~a---~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~-~~gvW~~~i~~~--~~~~~Y~y~i~ 169 (666)
.++. ...++.+++||+.+.. .+|.|.+...++ ...++|.+.... ...+|++.|+.. ..-..|.|+|.
T Consensus 11 ~~~~-~~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~------~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~ 83 (598)
T PRK10785 11 APFV-KQSKDQLLITLWLTGEDPPQRVMLRCEPDNE------EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLL 83 (598)
T ss_pred cccc-ccCCCEEEEEEEEcCCCceEEEEEEEEcCCC------EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEE
Confidence 3444 2477889999998743 466665432211 235677654332 235799999754 34467888874
Q ss_pred CccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCc
Q 005976 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGF 249 (666)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~~~~vIYei~v~~f 249 (666)
.. .+..+ .+- ..+ +...+ .....|.+......+.+.++.|||||+|++|
T Consensus 84 ~~----~~~~~------~~~--~g~------~~~~~-------------~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF 132 (598)
T PRK10785 84 WH----DRQRW------FTP--QGF------SRRPP-------------ARLEQFAVDVPDQGPQWVADQVFYQIFPDRF 132 (598)
T ss_pred eC----CEEEE------EcC--Cce------eeccC-------------CCccceEeeCCCCCCchhhcCEEEEechhhh
Confidence 32 11111 000 000 00000 0001122211111111238999999999999
Q ss_pred ccCCCCCC--------------------------------CCCcchhhhhhhhHHHHHcCCceEEECccccccccccccc
Q 005976 250 TRHESSKT--------------------------------EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSY 297 (666)
Q Consensus 250 ~~~~~~~~--------------------------------~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~ 297 (666)
.+++++++ .++|||+||++||||||+||||+|||+||++.++
T Consensus 133 ~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s------ 206 (598)
T PRK10785 133 ARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPS------ 206 (598)
T ss_pred cCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCC------
Confidence 98776422 2489999999999999999999999999998642
Q ss_pred cCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccc----
Q 005976 298 NSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS---- 373 (666)
Q Consensus 298 ~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~---- 373 (666)
+|||++.||+.|||+||+ .++|++||++||++||+||||+|+||++.+|.|+....
T Consensus 207 ----------~hgYd~~Dy~~iDp~~Gt----------~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ 266 (598)
T PRK10785 207 ----------VHKYDTEDYRHVDPQLGG----------DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTG 266 (598)
T ss_pred ----------CCCcCcccccccCcccCC----------HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhcccc
Confidence 599999999999999998 99999999999999999999999999999876532111
Q ss_pred --cC--CCCCccceeeCCCCCccccCCC--CccCCCCCHHHHHHHHH----HHHHHHHh-CCccEEEEecCCccccC---
Q 005976 374 --FR--GVDNSVYYMLAPKGEFYNYSGC--GNTFNCNHPVVRQFIVD----CLRYWVTE-MHVDGFRFDLASIMTRG--- 439 (666)
Q Consensus 374 --~~--~~~~~~~y~~~~~g~~~~~~~~--~~dln~~~p~vr~~i~d----~l~~W~~e-~gIDGfR~D~a~~l~~~--- 439 (666)
+. .....+||...+.+.+..|.+. .++||+++|+||++|++ ++++|+++ |||||||+|+|+.+++.
T Consensus 267 ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~ 346 (598)
T PRK10785 267 GACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGA 346 (598)
T ss_pred ccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCc
Confidence 01 1223457777776766666654 47999999999999995 89999986 99999999999988642
Q ss_pred ---CCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceEEEeeccCCCcccccccCCCCcccccch-hHHH
Q 005976 440 ---SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNG-KYRD 515 (666)
Q Consensus 440 ---~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~~~~~g~~~~~~~~~~~n~-~f~~ 515 (666)
..||.. +.+.++. ..|++++|||.|.....+..+. ++++.+|+ .|..
T Consensus 347 ~~~~~f~~~-----------------------~~~~vk~--~~pd~~ligE~~~~~~~~l~~~----~~d~~mny~~f~~ 397 (598)
T PRK10785 347 RNNLQHVAG-----------------------ITQAAKE--ENPEAYVLGEHFGDARQWLQAD----VEDAAMNYRGFAF 397 (598)
T ss_pred cccHHHHHH-----------------------HHHHHHh--hCCCeEEEEeccCChhhhccCc----cccccccchhhhh
Confidence 234443 3444544 5679999999997653332221 34567775 5888
Q ss_pred HHHHHHhCCC-------CcHHHHHHHHhCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCC
Q 005976 516 IVRQFIKGTD-------GFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETH 588 (666)
Q Consensus 516 ~~r~~l~g~~-------~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~ 588 (666)
.++.++.+.+ .....+...+......+.. ......+||++|||+.|+.+++.-
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~l~nHD~~R~~~~~~~------------------ 457 (598)
T PRK10785 398 PLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPH--QQQLRQFNQLDSHDTARFKTLLGG------------------ 457 (598)
T ss_pred HHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCH--HHHHHhhhccCCCccchhhhhhCC------------------
Confidence 8888887532 1234454444321111110 001246799999999998765420
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcCCC
Q 005976 589 NNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG 641 (666)
Q Consensus 589 ~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~~g 641 (666)
..+++++|+++|||+||+||||||||+||++..
T Consensus 458 --------------------~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~~ 490 (598)
T PRK10785 458 --------------------DKARMPLALVWLFTWPGVPCIYYGDEVGLDGGN 490 (598)
T ss_pred --------------------CHHHHHHHHHHHHhCCCCcEEEeeeeccccCCC
Confidence 135688999999999999999999999998753
No 20
>PLN02960 alpha-amylase
Probab=100.00 E-value=6.4e-51 Score=462.71 Aligned_cols=350 Identities=19% Similarity=0.274 Sum_probs=227.1
Q ss_pred CCCEEEEEEcCCCCCceEEEEEcCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCC--CCCC
Q 005976 147 TGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEF 224 (666)
Q Consensus 147 ~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 224 (666)
.+|.|+.+||+..+|.+|+|+|+.. +| .....||||+.+..... .+ ..++++... ...|
T Consensus 323 ~~gw~~~~ip~~~hG~~Yky~v~~~----~g-----~~~~vdpyA~~~qp~~~---~~-------~~~~v~~d~~~~~~y 383 (897)
T PLN02960 323 RKAWLKKYIPAIPHGSKYRVYFNTP----DG-----PLERVPAWATYVLPDPD---GK-------QWYAIHWEPPPEEAY 383 (897)
T ss_pred CCcEEEEEccCCCCCCEEEEEEEeC----CC-----ceEECCCcceeEeecCC---Cc-------cceEEEeCCCCCCCC
Confidence 4566667777777777888777632 11 11357999998742211 00 112333232 2469
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhh-hHHHHHcCCceEEECccccccccccccccCcCCC
Q 005976 225 DWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD 303 (666)
Q Consensus 225 ~W~~~~~~~~~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~-L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~ 303 (666)
+|+++.+. +.++++||||||+.|+.. ...|||++++++ |+|||+||||+||||||++++.
T Consensus 384 ~W~~~~p~--~~~~~vIYElHvg~~~~e-----~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~------------ 444 (897)
T PLN02960 384 KWKFERPK--VPKSLRIYECHVGISGSE-----PKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKD------------ 444 (897)
T ss_pred CCCCCCCC--CCCCcEEEEEecccccCC-----CCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCC------------
Confidence 99876432 457899999999988642 235899999976 8999999999999999998753
Q ss_pred CCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccce
Q 005976 304 YKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY 383 (666)
Q Consensus 304 ~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y 383 (666)
..+|||++.+||+|+++||+ ++|||.||++||++||+||||+|+||++.++..+ +..|+|.. ..||
T Consensus 445 --~~swGY~~~~yfa~~~~yGt----------p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~-L~~FDG~~-~~Yf 510 (897)
T PLN02960 445 --YSSVGYKVTNFFAVSSRFGT----------PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSN-DCYF 510 (897)
T ss_pred --CCCCCCCcccCCCcccccCC----------HHHHHHHHHHHHHCCCEEEEEecccccCCccccc-hhhcCCCc-ccee
Confidence 23699999999999999998 8999999999999999999999999998875332 33455532 2344
Q ss_pred eeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCC-CccccccccCc-cccCcccccC
Q 005976 384 MLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS-SLWDSVNVYGI-PIEGDLLTTG 461 (666)
Q Consensus 384 ~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~-~~W~~~~~~~~-~~~~~~~~~g 461 (666)
.....+.. ..+|+ ..||+.+++||++|++++++|++||||||||||++..|..-+ ++.. ..|. .+..+...
T Consensus 511 ~~~~~g~~-~~WG~-~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~---~~G~~~~~~n~~~-- 583 (897)
T PLN02960 511 HSGKRGHH-KRWGT-RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS---FTGDLDEYCNQYV-- 583 (897)
T ss_pred ecCCCCcc-CCCCC-cccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccc---cCCcccccCCccC--
Confidence 43333333 33343 568999999999999999999999999999999998764211 1100 0000 00001000
Q ss_pred CCCCChHHHHHHhc--CCCCCCceEEEeeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHH-HHHHhC
Q 005976 462 TPLRSPPLIDLISN--DPILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAF-AECLCG 537 (666)
Q Consensus 462 ~~~~~~~~~~~i~~--~~~~~~~~liaE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~-~~~l~~ 537 (666)
......++..+.. ....|++++|||.+..-. +...-..-.+|++..||..+.+.+..+++.... +.. ...+.+
T Consensus 584 -d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~--r~~~~~~l~~ 660 (897)
T PLN02960 584 -DRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPD--QEWSMSKIVS 660 (897)
T ss_pred -CchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcC--CCCChhccEe
Confidence 0111123333332 124689999999764331 111111123567888887777777666654211 110 012222
Q ss_pred CCccccCCCCCCcceEEecccCCC
Q 005976 538 SPNLYQGGGRKPWNSINFVCAHDG 561 (666)
Q Consensus 538 ~~~~~~~~~~~p~~~infv~nHD~ 561 (666)
+.. + ....+.+.|+|++|||.
T Consensus 661 s~~-~--~~~~~~~~v~Y~EnHDQ 681 (897)
T PLN02960 661 TLV-K--NKENADKMLSYAENHNQ 681 (897)
T ss_pred eec-c--CcCCcceEEEEecCcCc
Confidence 211 0 22457789999999998
No 21
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1e-47 Score=438.40 Aligned_cols=329 Identities=21% Similarity=0.288 Sum_probs=215.8
Q ss_pred CCCCCCCeEEEEEEeCCcccCCCCCC---------------CCCcchhhhhhhhHHHHHcCCceEEECcccccccccccc
Q 005976 232 LKYPQRDLIIYEVHVRGFTRHESSKT---------------EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296 (666)
Q Consensus 232 ~~~~~~~~vIYei~v~~f~~~~~~~~---------------~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~ 296 (666)
....|++.+||+|++++|.+++++++ .++|||+||+++|+||++||||+|||+||++........
T Consensus 183 ~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~ 262 (683)
T PRK09505 183 APFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGG 262 (683)
T ss_pred CChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccccccccc
Confidence 34457889999999999998876543 247999999999999999999999999999864221100
Q ss_pred ccCcCCC-CCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCC-CCCcccc
Q 005976 297 YNSVLGD-YKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND-KGPILSF 374 (666)
Q Consensus 297 ~~~~~~~-~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~-~~~~~~~ 374 (666)
...++ ..+.+|||++.||+.++++||+ .+|||+||++||++||+||||+|+||++..+. ....+.|
T Consensus 263 --g~~g~~~~~~yhgY~~~D~~~id~~~Gt----------~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f 330 (683)
T PRK09505 263 --GTKGDFPHYAYHGYYTLDWTKLDANMGT----------EADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQF 330 (683)
T ss_pred --ccccCCCcCCCCCCCccccccCCCCCCC----------HHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccch
Confidence 00111 1246799999999999999998 99999999999999999999999999984310 0000000
Q ss_pred CC----------CCCccceeeC-----------------CCCCccccCC------------------------CCccCCC
Q 005976 375 RG----------VDNSVYYMLA-----------------PKGEFYNYSG------------------------CGNTFNC 403 (666)
Q Consensus 375 ~~----------~~~~~~y~~~-----------------~~g~~~~~~~------------------------~~~dln~ 403 (666)
.. ...+.|+.+. ....+..|++ .-|+||+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~t 410 (683)
T PRK09505 331 GALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKT 410 (683)
T ss_pred hhhhhhccccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccc
Confidence 00 0111111110 0111111211 1245555
Q ss_pred C-----------------------CHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCccccc
Q 005976 404 N-----------------------HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTT 460 (666)
Q Consensus 404 ~-----------------------~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~ 460 (666)
+ ||+||++|++++++|++++||||||+|++++++. .||..+...
T Consensus 411 e~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~--~FW~~~~~~----------- 477 (683)
T PRK09505 411 ESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVEL--PAWQQLKQE----------- 477 (683)
T ss_pred cCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCH--HHHHHHHHH-----------
Confidence 4 5699999999999999999999999999999974 688763210
Q ss_pred CCCCCChHHHHHHhc-CC----CCCCceEEEeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHH
Q 005976 461 GTPLRSPPLIDLISN-DP----ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECL 535 (666)
Q Consensus 461 g~~~~~~~~~~~i~~-~~----~~~~~~liaE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l 535 (666)
....+...++ .+ ..+++.++||.|..+... ...+ ..++++.+|+.|+..+...... ...+....
T Consensus 478 -----~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~-~~y~-~~~fDsv~NF~~~~~~~~~~~~----~~~l~~~~ 546 (683)
T PRK09505 478 -----ASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMK-SDYY-RHGFDAMINFDYQEQAAKAVDC----LAQMDPTY 546 (683)
T ss_pred -----HHHHHHHHHHhccccccccCCeEEEEEecCCchhh-HHHH-hhcCccccCchHHHHHHHHHHH----HHHHHHHH
Confidence 0001111121 11 123589999999654211 1111 1357888998888776544331 11122211
Q ss_pred hCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 005976 536 CGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRN 615 (666)
Q Consensus 536 ~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~ 615 (666)
...... ......++||+|||+.|+.+... ...++|+
T Consensus 547 ~~~~~~-----~~~~~~l~FLdNHDt~Rf~s~~~---------------------------------------~~~~~kl 582 (683)
T PRK09505 547 QQMAEK-----LQDFNVLSYLSSHDTRLFFEGGQ---------------------------------------SYAKQRR 582 (683)
T ss_pred HHHhhh-----cCccceeecccCCChhhhhhhcC---------------------------------------chHHHHH
Confidence 111111 12346789999999999765331 0135778
Q ss_pred HHHHHHhhcCceeccccccccCcCC
Q 005976 616 FFLCLMVSQGVPMISMGDEYGHTKG 640 (666)
Q Consensus 616 a~alllt~pGiP~Iy~GdE~G~t~~ 640 (666)
|++++||+||+|+||||||+||++.
T Consensus 583 Aaall~tlpGiP~IYYGdEiGm~gg 607 (683)
T PRK09505 583 AAELLLLAPGAVQIYYGDESARPFG 607 (683)
T ss_pred HHHHHHhCCCCcEEEechhhCccCC
Confidence 9999999999999999999999764
No 22
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.9e-47 Score=429.49 Aligned_cols=331 Identities=22% Similarity=0.328 Sum_probs=220.3
Q ss_pred CCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCccc
Q 005976 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 235 ~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
+|++.|||||+|++|.+++.. ..|||+||+++|+||++||||+|||+||++.+. ..|||++.
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~---~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~---------------~~~gY~~~ 68 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGS---GTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQ---------------VDNGYDVA 68 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCC---CCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCC---------------CCCCCCcc
Confidence 468999999999999875533 479999999999999999999999999997542 13899999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCC------C
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP------K 388 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~------~ 388 (666)
||+.++++||| .++|++||++||++||+||||+|+||++..|+|+.-..-....+..||.... .
T Consensus 69 d~~~id~~~Gt----------~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~ 138 (551)
T PRK10933 69 NYTAIDPTYGT----------LDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPP 138 (551)
T ss_pred cCCCcCcccCC----------HHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCC
Confidence 99999999998 8999999999999999999999999999988764322111112234553321 0
Q ss_pred CCc------------------c--ccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccc
Q 005976 389 GEF------------------Y--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNV 448 (666)
Q Consensus 389 g~~------------------~--~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~ 448 (666)
..+ + .+....++||+++|+||++|++++++|+ ++||||||||+|+++.+...||+....
T Consensus 139 ~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~ 217 (551)
T PRK10933 139 NNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDG 217 (551)
T ss_pred CcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCccc
Confidence 000 0 1112367999999999999999999999 799999999999999987778764210
Q ss_pred cCccccCcccccCCCCCChHHHHHHhcCC-CCCCceEEEeeccCCCcc--cccccCCCCcccccchhHHHHHHHHHhCCC
Q 005976 449 YGIPIEGDLLTTGTPLRSPPLIDLISNDP-ILRGVKLIAEAWDTGGLY--QVGIFPHWGIWSEWNGKYRDIVRQFIKGTD 525 (666)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~-~~~~~~liaE~w~~~~~~--~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~ 525 (666)
-... .... ......+++.++... ..+++++|||.|...... .........++..+| |......++.|..
T Consensus 218 ~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fn--f~~~~~~~~~~~~ 289 (551)
T PRK10933 218 DGRR-----FYTD-GPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN--FHHLKVDYPNGEK 289 (551)
T ss_pred cccc-----ccCC-ChHHHHHHHHHHHHhhcccCcEEEEeecCCCHHHHHHhhcccCCeeeeEec--HHHhhhhhccCCc
Confidence 0000 0000 001234566665432 123678999998643100 000001112333444 4444444444421
Q ss_pred C-----cHHHHHHHHhCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcch
Q 005976 526 G-----FAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEF 600 (666)
Q Consensus 526 ~-----~~~~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~ 600 (666)
. ....+...+....... .......+|++|||+.|+.+.+. .+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~fl~NHD~~R~~sr~g--------------------------~~~-- 337 (551)
T PRK10933 290 WTLAKPDFVALKTLFRHWQQGM----HNVAWNALFWCNHDQPRIVSRFG--------------------------DEG-- 337 (551)
T ss_pred ccccccCHHHHHHHHHHHHHhh----cccCeeccccCCCCcccHHHHcC--------------------------Cch--
Confidence 1 1223333332111111 01124457999999999876552 100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcCC
Q 005976 601 ANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG 640 (666)
Q Consensus 601 ~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~~ 640 (666)
..+...+++++++|||+||+|+||||||+||++.
T Consensus 338 ------~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~ 371 (551)
T PRK10933 338 ------EYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNP 371 (551)
T ss_pred ------hHHHHHHHHHHHHHHhCCCceEEEeecccCCCCC
Confidence 1234456778889999999999999999999883
No 23
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.4e-47 Score=432.36 Aligned_cols=336 Identities=24% Similarity=0.358 Sum_probs=214.7
Q ss_pred CCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCccc
Q 005976 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 235 ~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
+++++|||||+|++|.+++.. .+|||+||+++||||++||||+|||+||++.+. .+|||++.
T Consensus 2 W~~~~viYqi~~~~f~d~~~~---~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~---------------~~~gY~~~ 63 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGD---GIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPL---------------RDDGYDVS 63 (539)
T ss_pred ccccceEEEEehhHhhcCCCC---CccCHHHHHHhHHHHHHCCCCEEEECCCcCCCC---------------CCCCCCcc
Confidence 358999999999999986543 379999999999999999999999999998542 24899999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccc-cCCCCCccceeeCCCC----
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS-FRGVDNSVYYMLAPKG---- 389 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~-~~~~~~~~~y~~~~~g---- 389 (666)
||++|+++||+ .++||+||++||++||+||||+|+||++.+++|+.-.. ......+.||...+.+
T Consensus 64 dy~~vd~~~Gt----------~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (539)
T TIGR02456 64 DYRAILPEFGT----------IDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYK 133 (539)
T ss_pred cccccChhhCC----------HHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccc
Confidence 99999999998 99999999999999999999999999998876532110 0111223444332111
Q ss_pred ---------------------Ccc--ccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCC------
Q 005976 390 ---------------------EFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS------ 440 (666)
Q Consensus 390 ---------------------~~~--~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~------ 440 (666)
.++ .+....++||+++|+||++|++++++|+ ++||||||||+++++.+..
T Consensus 134 ~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~ 212 (539)
T TIGR02456 134 DTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCEN 212 (539)
T ss_pred cccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCC
Confidence 000 1223468999999999999999999999 6999999999999885321
Q ss_pred -----CccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceEEEeeccCCCc-cc-ccccCCCCcccccchhH
Q 005976 441 -----SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGL-YQ-VGIFPHWGIWSEWNGKY 513 (666)
Q Consensus 441 -----~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~~-~~-~g~~~~~~~~~~~n~~f 513 (666)
.||+ .+.+.++. ..|++++|||.|..... .. .+.....+++..+|..+
T Consensus 213 ~p~~~~f~~-----------------------~~~~~v~~--~~p~~~~iaE~~~~~~~~~~y~~~~~~~~~d~~f~f~l 267 (539)
T TIGR02456 213 LPETHEFLK-----------------------RLRKMVDR--EYPGRMLLAEANQWPEEVVAYFGDEGDPECHMAFNFPV 267 (539)
T ss_pred CchHHHHHH-----------------------HHHHHHHH--hCCCeEEEEEeCCCHHHHHHhhCCCCCCeeeeEEChhh
Confidence 1222 13344433 45799999998532110 00 01101113556667666
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccc-cCCCCCCCCCCCCCC
Q 005976 514 RDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA-NGEDNNDGETHNNSW 592 (666)
Q Consensus 514 ~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a-~g~~~~dg~~~~~sw 592 (666)
...+...+.. .....+...+...+. + ..+...++|++|||+.++..+......+..+ .+.+ ....-
T Consensus 268 ~~~~~~~l~~--~~~~~l~~~l~~~~~-~----~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 334 (539)
T TIGR02456 268 MPRIFMALRR--EDRSPIIDILKETPD-I----PDSCQWCIFLRNHDELTLEMVTDEERDFMYAAYAPD------PRMRI 334 (539)
T ss_pred hhhhhccccc--CCHHHHHHHHHHhhh-c----cCCCceeeecCCCCccCccccChhhhhhhhhhccCC------cchhc
Confidence 5444332221 123334444432221 1 1233567899999998743111100000000 0000 00000
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcC
Q 005976 593 NCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTK 639 (666)
Q Consensus 593 ~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~ 639 (666)
+.+...++.+.. .-..+++++|++++||+||+|+||||||+||++
T Consensus 335 ~~~~~~R~~s~~--~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~ 379 (539)
T TIGR02456 335 NLGIRRRLAPLL--DNDRRRIELLTALLLSLPGSPILYYGDEIGMGD 379 (539)
T ss_pred ccchhhhhhhcc--cccHHHHHHHHHHHHhCCCceEEEechhhcCcC
Confidence 111111111110 002456889999999999999999999999975
No 24
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=3.2e-47 Score=430.64 Aligned_cols=331 Identities=21% Similarity=0.294 Sum_probs=218.8
Q ss_pred CCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccC
Q 005976 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (666)
Q Consensus 236 ~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~d 315 (666)
|++.|||||+|++|.+++. ...|||+||+++|+||++||||+|||+||++.+. +.+||++.|
T Consensus 2 ~~~~v~Y~i~~~~f~~~~~---~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~---------------~~~gY~~~d 63 (543)
T TIGR02403 2 WQKKVIYQIYPKSFYDSTG---DGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ---------------KDNGYDVSD 63 (543)
T ss_pred cccCEEEEEEhHHHhcCCC---CCccCHHHHHHhHHHHHHcCCCEEEECCcccCCC---------------CCCCCCccc
Confidence 6889999999999987443 3479999999999999999999999999998653 137999999
Q ss_pred CCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCC-CC-----
Q 005976 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-KG----- 389 (666)
Q Consensus 316 y~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~-~g----- 389 (666)
|+.++|+||+ .++|++||++||++||+||||+|+||++.+|+|+.-..-....+..||...+ .|
T Consensus 64 ~~~id~~~Gt----------~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~ 133 (543)
T TIGR02403 64 YYAINPLFGT----------MADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTN 133 (543)
T ss_pred cCccCcccCC----------HHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCc
Confidence 9999999998 9999999999999999999999999999887653211101122334443321 11
Q ss_pred -----------------Ccc--ccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccC
Q 005976 390 -----------------EFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYG 450 (666)
Q Consensus 390 -----------------~~~--~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~ 450 (666)
.++ .+...+++||+++|+||++|++++++|+ ++||||||||+|++|.+...+|+....-
T Consensus 134 ~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~- 211 (543)
T TIGR02403 134 WQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGD- 211 (543)
T ss_pred ccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCC-
Confidence 111 1223468999999999999999999999 6899999999999998765565531100
Q ss_pred ccccCcccccCCCCCChHHHHHHhcC-CCCCCceEEEeeccCCCccccc--ccCCCCcccccchhHHHHHHHHHhCCC--
Q 005976 451 IPIEGDLLTTGTPLRSPPLIDLISND-PILRGVKLIAEAWDTGGLYQVG--IFPHWGIWSEWNGKYRDIVRQFIKGTD-- 525 (666)
Q Consensus 451 ~~~~~~~~~~g~~~~~~~~~~~i~~~-~~~~~~~liaE~w~~~~~~~~g--~~~~~~~~~~~n~~f~~~~r~~l~g~~-- 525 (666)
+....... .....+++.++.. ...+++++|||.|.....+... ......+++.+| |......+..+..
T Consensus 212 ----~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~n--f~~~~~~~~~~~~~~ 284 (543)
T TIGR02403 212 ----GRRFYTDG-PRVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKELSMVFT--FHHLKVDYPNGEKWT 284 (543)
T ss_pred ----CccccCCC-hHHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEC--hhhhhchhccccccc
Confidence 00000000 0112345555431 0146899999999643211000 000112445555 3344444443321
Q ss_pred ---CcHHHHHHHHhCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhh
Q 005976 526 ---GFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFAN 602 (666)
Q Consensus 526 ---~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~ 602 (666)
.....+...+......+. ......++|++|||+.|+.+.+.- ..
T Consensus 285 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~fl~NHD~~R~~s~~g~--------------------------~~---- 331 (543)
T TIGR02403 285 LAKFDFAKLKEIFSTWQTGMQ---AGGGWNALFWNNHDQPRAVSRFGD--------------------------DG---- 331 (543)
T ss_pred cCCCCHHHHHHHHHHHHHhcc---ccCcceeeecCCCChhhHHHhcCC--------------------------ch----
Confidence 122334443322211111 012234679999999998765520 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcCC
Q 005976 603 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG 640 (666)
Q Consensus 603 ~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~~ 640 (666)
..+.++++++++++||+||+||||||||+||++.
T Consensus 332 ----~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~ 365 (543)
T TIGR02403 332 ----EYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNP 365 (543)
T ss_pred ----hhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCC
Confidence 0123457788889999999999999999999874
No 25
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=2e-46 Score=394.99 Aligned_cols=286 Identities=30% Similarity=0.529 Sum_probs=196.9
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHH
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk 340 (666)
|||+||++||+|||+||||+|||+||++.+. .+|||++.||++|+++||| .+|||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~---------------~~~gY~~~d~~~vd~~~Gt----------~~d~~ 55 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPN---------------GYHGYDPSDYYAVDPRFGT----------MEDFK 55 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSS---------------STTTTSESEEEEESTTTBH----------HHHHH
T ss_pred CCHHHHHHhhHHHHHcCCCceeccccccccc---------------ccccccceeeeccccccch----------hhhhh
Confidence 8999999999999999999999999999431 3699999999999999998 99999
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCCCCC-ccccCCCCCccceeeC-----CCCCc---------c--------ccCCC
Q 005976 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGP-ILSFRGVDNSVYYMLA-----PKGEF---------Y--------NYSGC 397 (666)
Q Consensus 341 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~~~~~~~~~~~y~~~-----~~g~~---------~--------~~~~~ 397 (666)
+||++||++||+||||+|+||++..+.+.. .....+...+.||.+. +.+.+ . .....
T Consensus 56 ~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 56 ELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hhhhccccccceEEEeeeccccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999876421 0111122244444422 11111 1 12233
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCC
Q 005976 398 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDP 477 (666)
Q Consensus 398 ~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~ 477 (666)
.++||+++|+||++|++++++|+ ++||||||||+++++.. .+|.. +...+..
T Consensus 136 ~~dln~~n~~v~~~i~~~~~~w~-~~giDGfR~D~~~~~~~--~~~~~-----------------------~~~~~~~-- 187 (316)
T PF00128_consen 136 LPDLNYENPEVREYIIDVLKFWI-EEGIDGFRLDAAKHIPK--EFWKE-----------------------FRDEVKE-- 187 (316)
T ss_dssp SEEBETTSHHHHHHHHHHHHHHH-HTTESEEEETTGGGSSH--HHHHH-----------------------HHHHHHH--
T ss_pred cchhhhhhhhhhhhhcccccchh-hceEeEEEEccccccch--hhHHH-----------------------Hhhhhhh--
Confidence 47899999999999999999999 67799999999999975 45544 4555554
Q ss_pred CCCCceEEEeeccCCCc-cc-ccccCCCCcccccchhHHHHHHHH---HhCCCCcHHHHHHHHhCCCccccCCCCCCcce
Q 005976 478 ILRGVKLIAEAWDTGGL-YQ-VGIFPHWGIWSEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNS 552 (666)
Q Consensus 478 ~~~~~~liaE~w~~~~~-~~-~g~~~~~~~~~~~n~~f~~~~r~~---l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 552 (666)
..+++.+++|.|..... .. .............+.......... ..........+...+......+ ..+...
T Consensus 188 ~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 263 (316)
T PF00128_consen 188 EKPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSY----PDPYRA 263 (316)
T ss_dssp HHTTSEEEEEESSSSHHHHHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS----TTGGGE
T ss_pred hccccceeeeeccCCccccchhhhccccccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhh----ccccee
Confidence 22689999999976531 00 000000111111222222222222 2233323344444433221111 124688
Q ss_pred EEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceecccc
Q 005976 553 INFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMG 632 (666)
Q Consensus 553 infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~G 632 (666)
++|++|||+.|+.+.+.. ...++++|++++||+||+||||||
T Consensus 264 ~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~G 305 (316)
T PF00128_consen 264 VNFLENHDTPRFASRFGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYYG 305 (316)
T ss_dssp EEESSHTTSSTHHHHTTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEETT
T ss_pred eecccccccccchhhhcc--------------------------------------cchHHHHHHHHHHcCCCccEEEeC
Confidence 999999999997765421 122788999999999999999999
Q ss_pred ccccCcCCC
Q 005976 633 DEYGHTKGG 641 (666)
Q Consensus 633 dE~G~t~~g 641 (666)
||+|+++..
T Consensus 306 ~E~g~~~~~ 314 (316)
T PF00128_consen 306 DEIGMTGSK 314 (316)
T ss_dssp GGGTBBTSS
T ss_pred hhccCCCCC
Confidence 999998864
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=7.9e-43 Score=390.63 Aligned_cols=284 Identities=19% Similarity=0.281 Sum_probs=195.2
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCC---------CcCCCCCCCCccCC
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF---------SPMISYSSAGIRNC 331 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~---------~~d~~ygt~~~~~~ 331 (666)
-+|++|++||+||++||||+|||+||++..+. ..+|||++.||| .|+++|||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~-------------~~~hgY~~~D~~~~~~~~~~~~id~~fGt------ 79 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSG-------------GYDVGYGVYDLFDLGEFDQKGTVRTKYGT------ 79 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCC-------------CCCCCCCeecccccccccccCCcCcCcCC------
Confidence 46789999999999999999999999996421 135999999999 68999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCC--CCCC---------------cc---cc-----CCCCC------c
Q 005976 332 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN--DKGP---------------IL---SF-----RGVDN------S 380 (666)
Q Consensus 332 ~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~--~~~~---------------~~---~~-----~~~~~------~ 380 (666)
.+|||+||++||++||+||+|+|+||++..+ ++.+ .+ .+ .+.+. .
T Consensus 80 ----~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (479)
T PRK09441 80 ----KEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKW 155 (479)
T ss_pred ----HHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCccee
Confidence 9999999999999999999999999998542 2221 00 00 00000 0
Q ss_pred cceeeCCC---------CCc------cccCC------------CCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 005976 381 VYYMLAPK---------GEF------YNYSG------------CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433 (666)
Q Consensus 381 ~~y~~~~~---------g~~------~~~~~------------~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a 433 (666)
.|+...+. +.+ ..|.+ ..+|||+++|+||++|++++++|++++||||||+|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDav 235 (479)
T PRK09441 156 HWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAV 235 (479)
T ss_pred CCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhh
Confidence 12211110 000 11211 1469999999999999999999998899999999999
Q ss_pred CccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceEEEeeccCCCc----ccccccCCCCccccc
Q 005976 434 SIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGL----YQVGIFPHWGIWSEW 509 (666)
Q Consensus 434 ~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~~----~~~g~~~~~~~~~~~ 509 (666)
++|+. .||.. +.+.++.. ..++++++||.|..... |..+. -+..+.+
T Consensus 236 k~v~~--~f~~~-----------------------~~~~~~~~-~~~~~~~vGE~~~~~~~~~~~y~~~~---~~~~~~~ 286 (479)
T PRK09441 236 KHIDA--WFIKE-----------------------WIEHVREV-AGKDLFIVGEYWSHDVDKLQDYLEQV---EGKTDLF 286 (479)
T ss_pred cCCCH--HHHHH-----------------------HHHHHHHh-cCCCeEEEEeecCCChHHHHHHHHhc---CCCceEe
Confidence 99974 46654 45555432 23579999999976531 11110 0123467
Q ss_pred chhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCC
Q 005976 510 NGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHN 589 (666)
Q Consensus 510 n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~ 589 (666)
+..+...++..+.+.. ...+...+.... . ...+..++|||+|||+.|+......
T Consensus 287 Df~~~~~l~~~~~~~~--~~~l~~~~~~~~-~----~~~~~~~~~FldNHD~~R~~~~~~~------------------- 340 (479)
T PRK09441 287 DVPLHYNFHEASKQGR--DYDMRNIFDGTL-V----EADPFHAVTFVDNHDTQPGQALESP------------------- 340 (479)
T ss_pred cHHHHHHHHHHHhcCC--ccchHhhhCcch-h----hcCcccceeeeccccCCCccccccc-------------------
Confidence 7777778877766421 223333332111 1 1245678999999999997532110
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc-CceeccccccccCcCC
Q 005976 590 NSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ-GVPMISMGDEYGHTKG 640 (666)
Q Consensus 590 ~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~p-GiP~Iy~GdE~G~t~~ 640 (666)
...+.+++|+++|||+| |+|+||||||+|+.+.
T Consensus 341 ------------------~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~ 374 (479)
T PRK09441 341 ------------------VEPWFKPLAYALILLREEGYPCVFYGDYYGASGY 374 (479)
T ss_pred ------------------ccccchHHHHHHHHhCCCCceeeEeccccCCCCC
Confidence 00112468999999999 9999999999999764
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.5e-39 Score=355.60 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=118.8
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcC-CCCCCCCccCCCCCcHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM-ISYSSAGIRNCGHDAINE 338 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d-~~ygt~~~~~~~~g~~~e 338 (666)
+|+|++|++||+||++||||+|||+|+++.. .++||++.|||.++ ++||+ .+|
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~----------------s~hGY~~~D~y~ld~~~fGt----------~~e 93 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHSV----------------SEQGYMPGRLYDLDASKYGN----------EAQ 93 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCCC----------------CCCCCCccccCCCCcccCCC----------HHH
Confidence 6899999999999999999999999998743 25899999999999 58998 999
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCC--CccccCCCC---CccceeeC----------CCCCccccC--CCCccC
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKG--PILSFRGVD---NSVYYMLA----------PKGEFYNYS--GCGNTF 401 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~--~~~~~~~~~---~~~~y~~~----------~~g~~~~~~--~~~~dl 401 (666)
||+||++||++||+||+|+|+||++.++... .+..+.+.. ...|+... ..+.+..+. ...+||
T Consensus 94 lk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDL 173 (428)
T PLN00196 94 LKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDI 173 (428)
T ss_pred HHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCcc
Confidence 9999999999999999999999998765321 122222211 12232110 011111111 224799
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc
Q 005976 402 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 402 n~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~ 438 (666)
|+++|+||++|++++++|++++||||||||++++++.
T Consensus 174 n~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~ 210 (428)
T PLN00196 174 DHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSA 210 (428)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCH
Confidence 9999999999999999888889999999999999873
No 28
>PLN02361 alpha-amylase
Probab=100.00 E-value=4e-38 Score=340.44 Aligned_cols=270 Identities=18% Similarity=0.235 Sum_probs=177.3
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
-|++|+++|+||++||||+|||+|+++..+ ++||++.|||.++++||+ .+||++
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~----------------~~GY~~~d~y~~~~~~Gt----------~~el~~ 80 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPSQSLA----------------PEGYLPQNLYSLNSAYGS----------EHLLKS 80 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCcCCC----------------CCCCCcccccccCcccCC----------HHHHHH
Confidence 589999999999999999999999998532 489999999999999998 999999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCC--CCCccccCCCCCccceee----CCCCC--ccc--cCCCCccCCCCCHHHHHH
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVEGND--KGPILSFRGVDNSVYYML----APKGE--FYN--YSGCGNTFNCNHPVVRQF 411 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~~~~--~~~~~~~~~~~~~~~y~~----~~~g~--~~~--~~~~~~dln~~~p~vr~~ 411 (666)
||++||++||+||+|+|+||++.... .+.+..+.+.. ..|... ...|. ... .....+|||+++|.||++
T Consensus 81 li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~-~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~ 159 (401)
T PLN02361 81 LLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP-LPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKD 159 (401)
T ss_pred HHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCc-CCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHH
Confidence 99999999999999999999853211 11111222210 011100 01111 010 112248999999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceEEEeeccC
Q 005976 412 IVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDT 491 (666)
Q Consensus 412 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~liaE~w~~ 491 (666)
|++++++|++++||||||+|++++++. .||.. +++. .. .+.+|||.|+.
T Consensus 160 l~~~~~wl~~~~GiDGfRlDavk~~~~--~f~~~-----------------------~~~~-----~~-p~f~VGE~w~~ 208 (401)
T PLN02361 160 IIGWLIWLRNDVGFQDFRFDFAKGYSA--KFVKE-----------------------YIEA-----AK-PLFSVGEYWDS 208 (401)
T ss_pred HHHHHHHHHhcCCCCEEEEeccccCCH--HHHHH-----------------------HHHh-----hC-CeEEEEEEecC
Confidence 999998666669999999999999973 45544 2222 12 37899999976
Q ss_pred CCccccc-cc---------------CCC-CcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEE
Q 005976 492 GGLYQVG-IF---------------PHW-GIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSIN 554 (666)
Q Consensus 492 ~~~~~~g-~~---------------~~~-~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~in 554 (666)
....... .. ... +..+.++..+...++..+.+. .-.+...+...+.. .+..|..+|+
T Consensus 209 ~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~---~~~l~~~~~~~~~~---~~~~p~~aVT 282 (401)
T PLN02361 209 CNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQ---WWRLRDAQGKPPGV---MGWWPSRAVT 282 (401)
T ss_pred CCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhh---HHHHhhhhcCCcch---hhcChhhceE
Confidence 3210000 00 000 112334444444444444211 11111111111111 2346789999
Q ss_pred ecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccc
Q 005976 555 FVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGD 633 (666)
Q Consensus 555 fv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~Gd 633 (666)
||+|||+.|+..+.. ....++++|+|+|||.||+||||||+
T Consensus 283 FvdNHDt~r~~~~~~--------------------------------------~~~~~~~~AyA~iLT~pG~P~Vyyg~ 323 (401)
T PLN02361 283 FIDNHDTGSTQAHWP--------------------------------------FPSDHIMEGYAYILTHPGIPTVFYDH 323 (401)
T ss_pred ecccCcCcchhhccC--------------------------------------CchHHHHHHHHHHHCCCCcCeEeecc
Confidence 999999988643210 02345677999999999999999998
No 29
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.5e-35 Score=335.91 Aligned_cols=294 Identities=21% Similarity=0.288 Sum_probs=191.1
Q ss_pred CCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCccc
Q 005976 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 235 ~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
+......|+|.+..|.-..... +.-|++|+++|+||++||||+|||+|+++.. .+|||+|.
T Consensus 495 ~~~~~~~~eVmlQgF~Wds~~d---g~w~~~I~ekldyL~~LG~taIWLpP~~~s~----------------s~~GY~p~ 555 (894)
T PLN02784 495 CSGTGSGFEILCQGFNWESHKS---GRWYMELGEKAAELSSLGFTVVWLPPPTESV----------------SPEGYMPK 555 (894)
T ss_pred cccccCCceEEEEeEEcCcCCC---CchHHHHHHHHHHHHHhCCCEEEeCCCCCCC----------------CCCCcCcc
Confidence 3456678999999997321111 2238999999999999999999999998743 24899999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCC--CCCccccCCCCCccceee-----CC
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND--KGPILSFRGVDNSVYYML-----AP 387 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~--~~~~~~~~~~~~~~~y~~-----~~ 387 (666)
|||.++++||+ .+|||.||++||++||+||+|+|+||++.... .+.+..+.+. .+|... ++
T Consensus 556 D~y~lds~yGT----------~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~--~dW~d~~i~~ddp 623 (894)
T PLN02784 556 DLYNLNSRYGT----------IDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGR--LNWDDRAVVADDP 623 (894)
T ss_pred cccccCcCcCC----------HHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCe--ecCCCCcccCCCc
Confidence 99999999998 99999999999999999999999999975311 1111111110 011100 00
Q ss_pred ----CCCccc--cCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccC
Q 005976 388 ----KGEFYN--YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTG 461 (666)
Q Consensus 388 ----~g~~~~--~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g 461 (666)
.|..+. .....+|||+.+|.||+.|.+++++|++++||||||||+|+++. ..
T Consensus 624 ~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~------~~---------------- 681 (894)
T PLN02784 624 HFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFW------GG---------------- 681 (894)
T ss_pred ccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCC------HH----------------
Confidence 011110 01234799999999999999999999889999999999998653 32
Q ss_pred CCCCChHHHHHHhcCCCCCCceEEEeeccCCCcccccccCCCCcccccc-hhHHHHHHHHHhCCCCcH--------HHHH
Q 005976 462 TPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWN-GKYRDIVRQFIKGTDGFA--------GAFA 532 (666)
Q Consensus 462 ~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~~~~~g~~~~~~~~~~~n-~~f~~~~r~~l~g~~~~~--------~~~~ 532 (666)
++...... . ...++|||.|+.... ..+. ..+| +.-++.+.+++....+.. ..|.
T Consensus 682 -------Fvkeyv~a-~-kp~F~VGEyWd~~~~-~~g~-------~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~ 744 (894)
T PLN02784 682 -------YVKDYMEA-S-EPYFAVGEYWDSLSY-TYGE-------MDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILH 744 (894)
T ss_pred -------HHHHHHhc-c-CCcEEEEEecccccc-ccCc-------cccCchhHHHHHHHHHHhCCCceeeechhHHHHHH
Confidence 22222221 2 236899999987421 1111 1112 122556666665433211 1222
Q ss_pred HHHhCCC-----ccc--c--CCCCCCcceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhH
Q 005976 533 ECLCGSP-----NLY--Q--GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANI 603 (666)
Q Consensus 533 ~~l~~~~-----~~~--~--~~~~~p~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~ 603 (666)
....+.. +.. . --+..|..+|+||+|||+.+... +|..
T Consensus 745 ~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~------------------------~w~~--------- 791 (894)
T PLN02784 745 SALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQG------------------------HWRF--------- 791 (894)
T ss_pred HHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcc------------------------cCCC---------
Confidence 2221100 000 0 02356889999999999975311 1211
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceecccccccc
Q 005976 604 LVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYG 636 (666)
Q Consensus 604 ~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G 636 (666)
...+..+|+|++||.||+||||||+=||
T Consensus 792 -----p~~k~~~AYAyILthpG~PcVFy~h~y~ 819 (894)
T PLN02784 792 -----PEGKEMQGYAYILTHPGTPAVFYDHIFS 819 (894)
T ss_pred -----CccchhhHHHHHHcCCCcceEEehhhhh
Confidence 1123456899999999999999999765
No 30
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=9.9e-35 Score=319.15 Aligned_cols=320 Identities=14% Similarity=0.183 Sum_probs=210.0
Q ss_pred CCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhH-HHHHcCCceEEECccccc-cccccccccCcCCCCCccccCCccc
Q 005976 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLD-HLKDLGINCLELMPCHEF-NELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 237 ~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~-yLk~LGvnaI~L~Pi~e~-~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
++.++.-.+.+++. .|+|+||+++|+ ||++| |++|||||+|+. +. ...||++.
T Consensus 2 ~n~~~litY~Ds~~---------~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~---------------sD~GYdv~ 56 (495)
T PRK13840 2 KNKVQLITYADRLG---------DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDG---------------ADAGFDPI 56 (495)
T ss_pred CCceEEEEeccCCC---------CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCC---------------CCCCCCCc
Confidence 35566667777764 389999999999 59999 999999999953 22 13799999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccC--CCCCccceeeCCC----
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR--GVDNSVYYMLAPK---- 388 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~--~~~~~~~y~~~~~---- 388 (666)
||+.|+|+||+ .+||++|++ ||+||+|+|+|||+..|+|+.-+.-. ...+.+||.+.+.
T Consensus 57 DY~~VDP~fGt----------~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~ 121 (495)
T PRK13840 57 DHTKVDPRLGD----------WDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPD 121 (495)
T ss_pred ChhhcCcccCC----------HHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcC
Confidence 99999999998 999999995 99999999999999998875432111 2234455543210
Q ss_pred ---------------CC-c--------------cccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc
Q 005976 389 ---------------GE-F--------------YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 389 ---------------g~-~--------------~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~ 438 (666)
|. + ..|...++|||++||+|+++|++++++|+ +.||||||+||+..+.+
T Consensus 122 ~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K 200 (495)
T PRK13840 122 GATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIK 200 (495)
T ss_pred CCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhc
Confidence 11 1 12334578999999999999999999999 89999999999988765
Q ss_pred CCCccccccccCccccCcccccCCCCC----ChHHHHHHhcCCCCCCceEEEeeccCCCcc-cccccCCCCcccccchhH
Q 005976 439 GSSLWDSVNVYGIPIEGDLLTTGTPLR----SPPLIDLISNDPILRGVKLIAEAWDTGGLY-QVGIFPHWGIWSEWNGKY 513 (666)
Q Consensus 439 ~~~~W~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~i~~~~~~~~~~liaE~w~~~~~~-~~g~~~~~~~~~~~n~~f 513 (666)
.. |+.+. ...+++.++......+..+|+|.|..-+.. ..+ -.....+|+.+
T Consensus 201 ~~--------------------gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~----~e~~~vYnF~L 256 (495)
T PRK13840 201 KA--------------------GTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIA----KKVDRVYDFAL 256 (495)
T ss_pred CC--------------------CCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCcccccc----ccccEEecchh
Confidence 32 11111 122445444321122667899987532110 111 13556777766
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEecccCCCCChhHH----------Hhhhcccc-----ccc
Q 005976 514 RDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL----------VSYNQKHN-----LAN 578 (666)
Q Consensus 514 ~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~nHD~~rl~d~----------~~~~~~~~-----~a~ 578 (666)
...+...+... ....+..++... |...+|||.|||+..+.|+ ++..+... ...
T Consensus 257 p~ll~~aL~~~--~~~~L~~~l~~~----------p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~ 324 (495)
T PRK13840 257 PPLILHTLFTG--DVEALAHWLEIR----------PRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHAN 324 (495)
T ss_pred hHHHHHHHHhC--CchHHHHHHHhC----------CCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHh
Confidence 66555544322 345566666543 2344799999999998333 22111110 001
Q ss_pred CCC-----CCCC--CCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcC
Q 005976 579 GED-----NNDG--ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTK 639 (666)
Q Consensus 579 g~~-----~~dg--~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~ 639 (666)
|.. +-++ ....|.-||+...+.... .+++.+|.+++|++||||.||||+|+|..+
T Consensus 325 ~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~------d~r~lla~ai~~~~~GiP~iY~~~ll~~~N 386 (495)
T PRK13840 325 SHGESRQATGAAASNLDLYQVNCTYYDALGRN------DQDYLAARAIQFFAPGIPQVYYVGLLAGPN 386 (495)
T ss_pred ccCceeecCCcccccccchhhhccHHHHhcCC------cHHHHHHHHHHHcCCCcceeeechhhccCc
Confidence 110 1111 112344456554433221 247888999999999999999999999855
No 31
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=7.3e-35 Score=318.34 Aligned_cols=304 Identities=14% Similarity=0.175 Sum_probs=202.2
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
-|+++++.++ ||++ ||++|||+|+|++++ .+||++.||+.|+|+||+ .+||
T Consensus 16 lgdl~g~l~~--yL~~-~v~~i~LlPffps~s----------------D~GYdv~DY~~VDP~~Gt----------~~Df 66 (470)
T TIGR03852 16 LKELNKVLEN--YFKD-AVGGVHLLPFFPSTG----------------DRGFAPMDYTEVDPAFGD----------WSDV 66 (470)
T ss_pred hhhHHHHHHH--HHHH-hCCEEEECCCCcCCC----------------CCCcCchhhceeCcccCC----------HHHH
Confidence 5777777777 9999 799999999998642 389999999999999998 9999
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCCCCCCccccC--CCCCcccee-e----CCC------------------------
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR--GVDNSVYYM-L----APK------------------------ 388 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~--~~~~~~~y~-~----~~~------------------------ 388 (666)
++|+++ |+||+|+|+|||+..|+|+.-+.-. ...+.+||. . .+.
T Consensus 67 ~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~ 141 (470)
T TIGR03852 67 EALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTF 141 (470)
T ss_pred HHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEE
Confidence 999997 8999999999999998775433222 233455665 1 100
Q ss_pred --C--C--ccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCC
Q 005976 389 --G--E--FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGT 462 (666)
Q Consensus 389 --g--~--~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~ 462 (666)
| . +..|+..++|||+.+|.|+++|.+++++|+ +.||||||+||+..+.+.. |+
T Consensus 142 ~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~--------------------Gt 200 (470)
T TIGR03852 142 ADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKL--------------------GT 200 (470)
T ss_pred cCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccC--------------------CC
Confidence 0 0 112345679999999999999999999999 8999999999999887532 22
Q ss_pred CC-----CChHHHHHHhcCCCCCCceEEEeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhC
Q 005976 463 PL-----RSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCG 537 (666)
Q Consensus 463 ~~-----~~~~~~~~i~~~~~~~~~~liaE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~ 537 (666)
.+ ....+++.++.-...+++.||+|.|..-. ++. ..+-.+.|.+.|.-....+..-..+....+..++..
T Consensus 201 ~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~-~~~----~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~ 275 (470)
T TIGR03852 201 NDFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYT-IQF----KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK 275 (470)
T ss_pred CcccCChhHHHHHHHHHHHhccCCCEEEeHhhhhcc-ccc----ccccceeEEccCccchhhHHHhhccCHHHHHHHHHh
Confidence 22 11234555555335569999999974211 100 012234555556555554443334567788888875
Q ss_pred CCccccCCCCCCcceEEecccCCCCChhH---HHhhhcccc-----cccCCCC-------CCCCCCCCCCCCCCCcchhh
Q 005976 538 SPNLYQGGGRKPWNSINFVCAHDGFSLAD---LVSYNQKHN-----LANGEDN-------NDGETHNNSWNCGQEGEFAN 602 (666)
Q Consensus 538 ~~~~~~~~~~~p~~~infv~nHD~~rl~d---~~~~~~~~~-----~a~g~~~-------~dg~~~~~sw~~g~~g~~~~ 602 (666)
.|. ...|||+|||+..|.+ +++-.+... ...|... .+|....|.-|| ....
T Consensus 276 ~p~----------~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~----t~~~ 341 (470)
T TIGR03852 276 SPM----------KQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINC----TYYS 341 (470)
T ss_pred Ccc----------cceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeeh----hhHH
Confidence 442 3369999999999744 222211100 0111111 122222222222 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeccccccccCcC
Q 005976 603 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTK 639 (666)
Q Consensus 603 ~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~ 639 (666)
+... ..+++.+|.+++|++||||.||||+|+|+.+
T Consensus 342 aL~~--~~~r~~~a~ai~~~lpGiP~iYy~~llg~~n 376 (470)
T TIGR03852 342 ALGD--DDQAYLLARAIQFFAPGIPQVYYVGLLAGKN 376 (470)
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCceEEechhhcCCc
Confidence 2111 2478889999999999999999999999954
No 32
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.4e-32 Score=307.49 Aligned_cols=394 Identities=20% Similarity=0.258 Sum_probs=238.9
Q ss_pred CCCCEEEEEEcCCCCCceEEEEEcCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCC--CC
Q 005976 146 KTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--DE 223 (666)
Q Consensus 146 ~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~ 223 (666)
..++.|...+|...++..|+.++... .|. .+ -+.++++.+..... +. ...+++..++ ..
T Consensus 327 ~~~~w~~~~~~~i~H~s~~k~~~~~~----~g~-~~----RiPaw~~~~~~~~~-~~---------~~~~~~w~P~~~~~ 387 (872)
T PLN03244 327 GRKAWLKKYIPAIPHGSKYRLYFNTP----DGP-LE----RIPAWATYVLPDDD-GK---------QAFAIHWEPPPEAA 387 (872)
T ss_pred ccCceeecccCCCCCCCeEEEEEEcC----CCC-cc----cCCCCeeeEEecCC-CC---------ceeeeEeCCCcccC
Confidence 45688889999999999999998643 222 11 24566766643311 10 1122333332 35
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCC
Q 005976 224 FDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD 303 (666)
Q Consensus 224 ~~W~~~~~~~~~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~ 303 (666)
|.|+...|.. ...+.|||+||.-.+. ....|||+.++++
T Consensus 388 y~~k~~~p~~--p~~lrIYE~HvGms~~-----e~kv~ty~eF~~~---------------------------------- 426 (872)
T PLN03244 388 HKWKNMKPKV--PESLRIYECHVGISGS-----EPKISSFEEFTEK---------------------------------- 426 (872)
T ss_pred CccCCCCCCC--CCCceEEEEEeeecCC-----CCCcccHHHHhhc----------------------------------
Confidence 8898765543 2678999999997653 2347999999986
Q ss_pred CCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccce
Q 005976 304 YKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY 383 (666)
Q Consensus 304 ~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y 383 (666)
+.+||+|+++||+ ++|||+||++||++||+||||||+||++.+...+ +..++|.. ..||
T Consensus 427 ---------vt~fFApssRYGT----------PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G-L~~fDGt~-~~Yf 485 (872)
T PLN03244 427 ---------VTNFFAASSRYGT----------PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSN-DCYF 485 (872)
T ss_pred ---------cCcccccCcccCC----------HHHHHHHHHHHHHCCCEEEEEecCccCCCccccc-hhhcCCCc-ccee
Confidence 2368999999998 9999999999999999999999999999765333 34455533 3466
Q ss_pred eeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc-CCCccccccccCccccCcccccCC
Q 005976 384 MLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-GSSLWDSVNVYGIPIEGDLLTTGT 462 (666)
Q Consensus 384 ~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~-~~~~W~~~~~~~~~~~~~~~~~g~ 462 (666)
...+.|... .+|+ ..+|+.+++||++|+++++||++||||||||||++..|.. ..+. ..+..-+ .+..+...
T Consensus 486 ~~~~~g~~~-~WGs-~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~-~~y~n~~~--- 558 (872)
T PLN03244 486 HTGKRGHHK-HWGT-RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDL-DDYCNQYV--- 558 (872)
T ss_pred ccCCCCccC-CCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCc-cccccccC---
Confidence 555555443 4455 6899999999999999999999999999999998866642 1111 0000000 00000000
Q ss_pred CCCChHHHHHHhc--CCCCCCceEEEeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCC---CcHHHHHHHHh
Q 005976 463 PLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD---GFAGAFAECLC 536 (666)
Q Consensus 463 ~~~~~~~~~~i~~--~~~~~~~~liaE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~---~~~~~~~~~l~ 536 (666)
......++..+.. ....|++++|||....- .+...-..-..|++..||..+.+....+++-.. -..+.+...|.
T Consensus 559 d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~ 638 (872)
T PLN03244 559 DKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLI 638 (872)
T ss_pred CchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhh
Confidence 0011112222221 12568999999976533 111111122457889999887777777776532 23344544443
Q ss_pred CCCccccCCCCCCcceEEecccCCCC-----ChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 005976 537 GSPNLYQGGGRKPWNSINFVCAHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRR 611 (666)
Q Consensus 537 ~~~~~~~~~~~~p~~~infv~nHD~~-----rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~ 611 (666)
.+. +....++.|.+|||.. |+...+- +... . +..+ ... .+.+ ...
T Consensus 639 ~nr-------r~~ek~~aYsESHDqaLvGdKTlaf~l~---------d~~~--y------~~~~-~~~----vv~R-g~a 688 (872)
T PLN03244 639 ANK-------EYADKMLSYAENHNQSISGGRSFAEILF---------GAID--E------DPLG-GKE----LLDR-GCS 688 (872)
T ss_pred ccc-------CCcceEEEEecccceeccccchHHhhhc---------cccc--c------cccc-cch----hhhh-hhH
Confidence 221 2235789999999983 2221111 1100 0 0000 000 0000 011
Q ss_pred HHHHHHHHHHhhcCce-eccccccccCcC------CCCCCCCCCCCccccccccccc
Q 005976 612 QMRNFFLCLMVSQGVP-MISMGDEYGHTK------GGNNNTYCHDNDVNLCTLLISG 661 (666)
Q Consensus 612 ~~r~a~alllt~pGiP-~Iy~GdE~G~t~------~gn~n~y~~~~~~n~~dw~~~~ 661 (666)
.-|++-+++++++|.| ++|||+|||+.. .||+.+|.. ..++|.+++
T Consensus 689 LhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~----arrdW~Lld 741 (872)
T PLN03244 689 LHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSL----ANRCWDLLE 741 (872)
T ss_pred HHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccc----cccCccccC
Confidence 2233345678899988 799999999955 355555432 245777654
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-34 Score=322.78 Aligned_cols=174 Identities=33% Similarity=0.581 Sum_probs=138.3
Q ss_pred eEEEEEEeCCcccCCCCCC---CCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccC
Q 005976 239 LIIYEVHVRGFTRHESSKT---EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (666)
Q Consensus 239 ~vIYei~v~~f~~~~~~~~---~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~d 315 (666)
.+||++++++|.+...++. ...|||+||+++||||++|||++|||+||++.+. .++||++.|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~---------------~~~gY~~~D 65 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQ---------------ADHGYDVSD 65 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCc---------------cCCCccccc
Confidence 4899999999998654211 1259999999999999999999999999999642 358999999
Q ss_pred CCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCC-C-ccceeeCC------
Q 005976 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVD-N-SVYYMLAP------ 387 (666)
Q Consensus 316 y~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~-~-~~~y~~~~------ 387 (666)
|+.+++.||+ +++|++||++||++||+||||+|+||++..+.|+......... . ..||.+.+
T Consensus 66 y~~id~~~Gt----------~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~ 135 (505)
T COG0366 66 YTKVDPHFGT----------EEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGT 135 (505)
T ss_pred hhhcCcccCC----------HHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCC
Confidence 9999999998 9999999999999999999999999999988754322221110 0 24444321
Q ss_pred ------------------CCCcc--ccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccc
Q 005976 388 ------------------KGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 388 ------------------~g~~~--~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~ 438 (666)
.+.++ .+...+++||+.+|+||+.+.+++++|+ ++||||||+|+++++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~ 205 (505)
T COG0366 136 PPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISK 205 (505)
T ss_pred CCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhcc
Confidence 01111 1223347899999999999999999999 59999999999999986
No 34
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=5.5e-32 Score=304.97 Aligned_cols=175 Identities=24% Similarity=0.386 Sum_probs=143.2
Q ss_pred CCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCccc
Q 005976 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 235 ~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
.|+..+||||.+++|..++..+ .|+++||++||+|||+||||+|||+||++.... ++||++.
T Consensus 14 ~W~~~~~YQI~~~sF~~s~~d~---~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~---------------~~GY~~~ 75 (545)
T KOG0471|consen 14 WWKTESIYQIYPDSFADSDGDG---VGDLKGITSKLDYIKELGFTAIWLSPFTKSSKP---------------DFGYDAS 75 (545)
T ss_pred hhhcCceeEEeccccccccCCC---ccccccchhhhhHHHhcCCceEEeCCCcCCCHH---------------HhccCcc
Confidence 4688999999999999855444 599999999999999999999999999997542 5899999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCc---
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF--- 391 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~--- 391 (666)
||+.++|+||| +++|++||+++|++||+||+|+|+||++..++|+--.......+.+||...+.+.+
T Consensus 76 d~~~l~p~fGt----------~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g 145 (545)
T KOG0471|consen 76 DLEQLRPRFGT----------EEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVG 145 (545)
T ss_pred chhhhcccccH----------HHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCccccccc
Confidence 99999999998 99999999999999999999999999998877643222222223445544433211
Q ss_pred -----c-----------------------ccCCCCccCCCCCHHHHHHHHHHHH-HHHHhCCccEEEEecCCcccc
Q 005976 392 -----Y-----------------------NYSGCGNTFNCNHPVVRQFIVDCLR-YWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 392 -----~-----------------------~~~~~~~dln~~~p~vr~~i~d~l~-~W~~e~gIDGfR~D~a~~l~~ 438 (666)
. .+...++|||+++|.|++.|.++++ +|+ ++||||||+|+++++..
T Consensus 146 ~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~ 220 (545)
T KOG0471|consen 146 KRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAG 220 (545)
T ss_pred CCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccc
Confidence 0 1112247999999999999999999 887 99999999999999874
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.96 E-value=3.3e-28 Score=268.44 Aligned_cols=280 Identities=18% Similarity=0.144 Sum_probs=177.0
Q ss_pred CCeEEEEEEeCCcccCCCCCCCCCcchhh-hh--hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcc
Q 005976 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLG-VV--EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (666)
Q Consensus 237 ~~~vIYei~v~~f~~~~~~~~~~~G~~~g-i~--~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (666)
+-.+-+.+++.++.... +..+-+ +. ...+||++|||++|||+|++++....-+.. + .....||+.
T Consensus 50 ~a~~W~~~~P~s~i~~~------~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~-t-----P~~D~gyDi 117 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPE------GCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREF-T-----PSIDGNFDR 117 (688)
T ss_pred hcCeeEEecchhhcCCC------CCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCC-C-----CCCCCCCCc
Confidence 45567788888887533 222333 32 235999999999999999999844321111 0 111368999
Q ss_pred cCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccce----------
Q 005976 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY---------- 383 (666)
Q Consensus 314 ~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y---------- 383 (666)
.| +.|+|.||| .+||++||++||++||+||+|+|+|||+.+++ +........+++.||
T Consensus 118 ~d-~~Idp~~GT----------~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W 185 (688)
T TIGR02455 118 IS-FDIDPLLGS----------EEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDW 185 (688)
T ss_pred cc-CccCcccCC----------HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeecccccccc
Confidence 99 599999998 99999999999999999999999999999987 433333334556667
Q ss_pred -eeC--CCC------------------------------------------------------Ccc--ccCCCCccCCCC
Q 005976 384 -MLA--PKG------------------------------------------------------EFY--NYSGCGNTFNCN 404 (666)
Q Consensus 384 -~~~--~~g------------------------------------------------------~~~--~~~~~~~dln~~ 404 (666)
-+. +.+ .+| .|...+|+||+.
T Consensus 186 ~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~ 265 (688)
T TIGR02455 186 ALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWL 265 (688)
T ss_pred ccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCcc
Confidence 111 111 111 122335899999
Q ss_pred CHH--HHHHHH-HHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhc----CC
Q 005976 405 HPV--VRQFIV-DCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN----DP 477 (666)
Q Consensus 405 ~p~--vr~~i~-d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~----~~ 477 (666)
+|. ||+.|+ +++++|+ +.|+||||+||+..+..+..- ++..... ..++++.++. ..
T Consensus 266 dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~-----------~~~~~~e-----~h~ll~~~r~~l~~~~ 328 (688)
T TIGR02455 266 DPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRA-----------EGTAWSE-----GHPLSLTGNQLIAGAI 328 (688)
T ss_pred CccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCC-----------CCCCCCc-----cCHHHHHHHHHHHHhh
Confidence 999 999999 8999999 999999999999988643210 1111101 1234333332 22
Q ss_pred CCCCceEEEeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEecc
Q 005976 478 ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 557 (666)
Q Consensus 478 ~~~~~~liaE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~ 557 (666)
..++..+++|.=-.-... ...+.. +.+..+++.-+-.+...+.. +....+...|...+.. +.++.+.++|+.
T Consensus 329 r~~Gg~ll~E~nl~~~d~-~~~~g~-~~dl~~dF~t~p~~~~AL~t--gda~pLr~~L~~~~~~----gid~~~~~~~Lr 400 (688)
T TIGR02455 329 RKAGGFSFQELNLTIDDI-AAMSHG-GADLSYDFITRPAYHHALLT--GDTEFLRLMLKEMHAF----GIDPASLIHALQ 400 (688)
T ss_pred hcCCeeEeeeccCCHHHH-HHHhCC-CcceeecccccHHHHHHHHc--CCHHHHHHHHHhhhcC----CCCchhhhhhcc
Confidence 456888999862111000 000111 34444454444444333321 2345555555544432 224568899999
Q ss_pred cCCCCChh
Q 005976 558 AHDGFSLA 565 (666)
Q Consensus 558 nHD~~rl~ 565 (666)
|||+.++.
T Consensus 401 NHDELtle 408 (688)
T TIGR02455 401 NHDELTLE 408 (688)
T ss_pred Cccccchh
Confidence 99999875
No 36
>smart00642 Aamy Alpha-amylase domain.
Probab=99.88 E-value=1.2e-22 Score=195.74 Aligned_cols=97 Identities=35% Similarity=0.575 Sum_probs=87.3
Q ss_pred EEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCC
Q 005976 243 EVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMIS 322 (666)
Q Consensus 243 ei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ 322 (666)
||++++|.++++++ .|||++++++|+||++||||+|||+|++++... ...+|||++.||++++++
T Consensus 1 qi~~~~F~~~~~~~---~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~------------~~~~~gY~~~d~~~i~~~ 65 (166)
T smart00642 1 QIYPDRFADGNGDG---GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQG------------YPSYHGYDISDYKQIDPR 65 (166)
T ss_pred CeeeccccCCCCCC---CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCC------------CCCCCCcCccccCCCCcc
Confidence 57899999876665 899999999999999999999999999997531 123699999999999999
Q ss_pred CCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 005976 323 YSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 323 ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 364 (666)
||+ .+||++||++||++||+||+|+|+||++.
T Consensus 66 ~Gt----------~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 66 FGT----------MEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred cCC----------HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 998 89999999999999999999999999974
No 37
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.87 E-value=1.5e-21 Score=224.59 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=75.9
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
+|||.+++++|+||++|||++|||+||++... ..+|||++.||+.+++.||+ .++|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~--------------gs~hGYdv~D~~~idp~lGt----------~edf 67 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVP--------------GSTHGYDVVDHSEINPELGG----------EEGL 67 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCC--------------CCCCCCCCCCCCCcCCCCCC----------HHHH
Confidence 68999999999999999999999999998532 12599999999999999998 9999
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCC
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTVEG 365 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~~~ 365 (666)
++||++||++||+||||+|+||++..
T Consensus 68 ~~Lv~aah~~Gm~vIlDiVpNH~a~~ 93 (825)
T TIGR02401 68 RRLSEAARARGLGLIVDIVPNHMAVH 93 (825)
T ss_pred HHHHHHHHHCCCEEEEEecccccccc
Confidence 99999999999999999999999875
No 38
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.85 E-value=4.6e-20 Score=200.31 Aligned_cols=290 Identities=23% Similarity=0.380 Sum_probs=186.0
Q ss_pred CCCCeEEeCCc-EEEEEEcCCCC-------eEEEEEEeCCCCcCCc-----cc---eeeecccccCCCCCEEEEEEcCC-
Q 005976 96 TPFGATLRDGG-VNFSIFSSNAV-------SATLCLITLSDLQENK-----VT---EEIALDSFANKTGDVWHVFLKGD- 158 (666)
Q Consensus 96 ~~lGa~~~~~g-~~F~vwap~a~-------~v~L~l~~~~~~~~~~-----~~---~~~~l~~~~~~~~gvW~~~i~~~- 158 (666)
..||||+.++| |.|.+|.|.-. .|.|.+|++-+..+.. .. ..+|| .+.|.+-+..+.|.
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L----~~qgey~WgVv~Glr 101 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPL----ERQGEYHWGVVAGLR 101 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEee----ccccceeeehhhccC
Confidence 47999999888 79999999655 9999999875422211 11 12333 23444444445543
Q ss_pred -----CCCceEEEEEcCccCCCCCccccCcceecCccceeeeeccccCCcCCCCCCCCcceeccCCCCC-C-CC-----C
Q 005976 159 -----FKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPED-E-FD-----W 226 (666)
Q Consensus 159 -----~~~~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~-----W 226 (666)
.-|.+|.-+.... +| .-+++.||.|.++ +||+.+|.+- +.+..+-....+ . |. =
T Consensus 102 aGtr~q~GsfYwLry~d~----~~----~~~~I~DpLaySl----PyGvfaPAEl--YDl~~lq~~RaD~~Yf~~~~a~~ 167 (811)
T PF14872_consen 102 AGTRDQAGSFYWLRYRDQ----DG----EVQIIRDPLAYSL----PYGVFAPAEL--YDLERLQRRRADLDYFEATGAAD 167 (811)
T ss_pred CCCcccccceEEEEEccC----CC----CeEEecccccccC----cccccChHHh--hchHhHhhhhhhHHHHHhhcccc
Confidence 3466888776422 12 3468999999987 7999888742 111111000000 0 00 0
Q ss_pred CCCCCCCCCCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHH---------------cCCceEEECccccccc
Q 005976 227 EGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKD---------------LGINCLELMPCHEFNE 291 (666)
Q Consensus 227 ~~~~~~~~~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~---------------LGvnaI~L~Pi~e~~~ 291 (666)
+.+..++.+ ....|-||||.+-+. .||+.|+++....|.+ .|+++|+||||-...+
T Consensus 168 ~~~~~~rv~-~P~nILQiHv~TAsp--------~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtie 238 (811)
T PF14872_consen 168 PSDGIPRVP-APRNILQIHVGTASP--------EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIE 238 (811)
T ss_pred CCCCCcccC-CCceeEEEecCCCCC--------CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcce
Confidence 012233333 468899999998765 6999999987766654 7999999999954321
Q ss_pred --------cccccccCc---------------------CCCCCccccCCcccCCCCcCCCCCCCCccCCC--CCcHHHHH
Q 005976 292 --------LEYFSYNSV---------------------LGDYKVNFWGYSTINYFSPMISYSSAGIRNCG--HDAINEFK 340 (666)
Q Consensus 292 --------~~~~~~~~~---------------------~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~--~g~~~efk 340 (666)
.+++...+. ......-+|||++. -+|+..+.|.- ..+++||-
T Consensus 239 yr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~-------I~GsaAtNPalL~TlRPDElV 311 (811)
T PF14872_consen 239 YRAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVV-------ILGSAATNPALLETLRPDELV 311 (811)
T ss_pred eccccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCccee-------eeccCCCCHHHHhcCCcHHHH
Confidence 111111100 11234568999984 33443333222 35699999
Q ss_pred HHHHHHHH---cCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHH
Q 005976 341 LLVREAHK---RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417 (666)
Q Consensus 341 ~LV~~aH~---~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~ 417 (666)
+||+++|. ..|+||+|+||.|....+.. +++-+-...+.. .|.+||+.+|.||..+++.-+
T Consensus 312 dfiatLHnFp~gPIqvIyDlVyGHADNQ~~~--LLn~~flkGPnM--------------YGQdlnhq~P~VRAILLEmQR 375 (811)
T PF14872_consen 312 DFIATLHNFPTGPIQVIYDLVYGHADNQALD--LLNRRFLKGPNM--------------YGQDLNHQNPVVRAILLEMQR 375 (811)
T ss_pred HHHHHHhcCCCCCeEEEEeeecccccchhhH--hhhhhhccCCcc--------------ccccccccChHHHHHHHHHHH
Confidence 99999995 67999999999998665421 222111122222 267999999999999999999
Q ss_pred HHHHhCCccEEEEecCCcc
Q 005976 418 YWVTEMHVDGFRFDLASIM 436 (666)
Q Consensus 418 ~W~~e~gIDGfR~D~a~~l 436 (666)
.=+ ++|+||+|+|.+.-.
T Consensus 376 RK~-n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 376 RKI-NTGADGIRVDGGQDF 393 (811)
T ss_pred hhc-ccCCceeEecccccc
Confidence 998 999999999988655
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.2e-18 Score=175.21 Aligned_cols=294 Identities=19% Similarity=0.246 Sum_probs=180.4
Q ss_pred chhhhhhhh-HHHHHcCCceEEECccccccccccccccCcCCCCCcccc-CCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 262 TYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFW-GYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 262 ~~~gi~~~L-~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~w-GY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
++..|+... ..|.--|+-+|+++|+.|..... ++ ..--| .|+|+.| .++.|-| .++||
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~--------~~-~rPWWeRYQPvSY-KL~tRSG----------NE~eF 97 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIH--------NP-FRPWWERYQPVSY-KLCTRSG----------NEDEF 97 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhc--------CC-CCCceeecccceE-EeeccCC----------CHHHH
Confidence 477777776 67788999999999999864311 00 01113 6999995 5566554 49999
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCC-----------CCCC-ccccCCCCCccceeeCC-----CCCcccc------CC
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTVEGN-----------DKGP-ILSFRGVDNSVYYMLAP-----KGEFYNY------SG 396 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~~~~-----------~~~~-~~~~~~~~~~~~y~~~~-----~g~~~~~------~~ 396 (666)
+.||+.|.+-|+++++|+|+|||+... ...| .-+|.|..++.+-...+ .+...++ ..
T Consensus 98 ~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~ 177 (504)
T KOG2212|consen 98 RDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRD 177 (504)
T ss_pred HHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhc
Confidence 999999999999999999999997311 0001 11344444333311111 1111111 12
Q ss_pred CC----ccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHH
Q 005976 397 CG----NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDL 472 (666)
Q Consensus 397 ~~----~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 472 (666)
|. .|||..+..||..|++.|.+++ ++||.|||.||++||.-.. -..++ .-++.
T Consensus 178 C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~D----i~~I~------------------~~l~n 234 (504)
T KOG2212|consen 178 CRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGD----IKAIL------------------DKLHN 234 (504)
T ss_pred ceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHH----HHHHH------------------HHHhh
Confidence 21 4899999999999999999999 9999999999999995210 00000 00122
Q ss_pred HhcC--CCCCCceEEEeeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCC
Q 005976 473 ISND--PILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKP 549 (666)
Q Consensus 473 i~~~--~~~~~~~liaE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p 549 (666)
+..| |.....+++-|+.+.++ ....+.+ .+.-+.-+..|.+.+-..+++.+.. +.|..-...+ +....
T Consensus 235 LnsD~f~s~srpfi~qEVID~GgE~v~~~dY--~g~G~~TeF~f~~~ig~~~r~~~~~-----kyL~nwG~~w--Gf~~s 305 (504)
T KOG2212|consen 235 LNSDWFPSGSKPFIYQEVIDLGGEPIKSSDY--FGNGRVTEFKFGAKLGTVIRKWNKM-----KYLKNWGEGW--GFMPS 305 (504)
T ss_pred cccccccCCCCceehhhhhhcCCceeecccc--cCCceeeeeechHHHHHHHhcchhH-----HHHHhcCCcc--CcCCC
Confidence 2222 33445677888877663 2222222 2333455667888888888875421 2222111111 11223
Q ss_pred cceEEecccCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc-Ccee
Q 005976 550 WNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ-GVPM 628 (666)
Q Consensus 550 ~~~infv~nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~p-GiP~ 628 (666)
..+++||+|||+.|-.. +.| +..-. -...++++||.+++|..| |+|-
T Consensus 306 ~~~L~FvDNHDNQR~~g----------agg-------------------a~Vlt---YK~~~~YkmA~~FmLA~PyG~~R 353 (504)
T KOG2212|consen 306 DRALVFVDNHDNQRGHG----------AGG-------------------ASVLT---YKDARLYKMAVGFMLAHPYGFTR 353 (504)
T ss_pred cceEEEeccCcccccCC----------CCc-------------------ceEEE---ecchhhhhhhhhhheecccCcch
Confidence 47899999999987321 100 00000 013678999999999999 9998
Q ss_pred ccccccccCcC
Q 005976 629 ISMGDEYGHTK 639 (666)
Q Consensus 629 Iy~GdE~G~t~ 639 (666)
+..---|-.+.
T Consensus 354 VMSSFaF~~~D 364 (504)
T KOG2212|consen 354 VMSSFAFDVND 364 (504)
T ss_pred hheeeeeecCC
Confidence 87765555444
No 40
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.74 E-value=2.3e-17 Score=191.01 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=76.3
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
.++|.+++++|+||++||||+|||+||++... ..+|||++.||+.+++.||+ .++|
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~--------------gs~hGYdv~D~~~idp~lGt----------~e~f 71 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARP--------------GSTHGYDVVDHTRINPELGG----------EEGL 71 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCC--------------CCCCCCCcCCCCCcCCCCCC----------HHHH
Confidence 57999999999999999999999999998632 12599999999999999998 8999
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCC
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTVEGN 366 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~~~~ 366 (666)
++||++||++||+||||+|+||++..+
T Consensus 72 ~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 72 RRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred HHHHHHHHHCCCEEEEEeccccccCcC
Confidence 999999999999999999999998765
No 41
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.73 E-value=2.3e-17 Score=150.46 Aligned_cols=101 Identities=53% Similarity=0.938 Sum_probs=86.2
Q ss_pred CeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCCCCc
Q 005976 99 GATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGH 178 (666)
Q Consensus 99 Ga~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g~ 178 (666)
||++.++|++|+||||+|++|+|+||++.+ ...+..+++|++..++++|+|+++|++...+.+|+|+|+|...+..|+
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~--~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~ 78 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGD--GDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGH 78 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCC--CCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccc
Confidence 789999999999999999999999997532 122334678876555678999999999999999999999988888999
Q ss_pred cccCcceecCccceeeeeccccC
Q 005976 179 YFDPTKIVLDPYAKAVISRAQFG 201 (666)
Q Consensus 179 ~~~~~~~~~DPya~~~~~~~~~~ 201 (666)
++++.++++||||+++..+..|+
T Consensus 79 ~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 79 RFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred ccCCCcEEECCCcCeEcCccccC
Confidence 99999999999999997776655
No 42
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.71 E-value=9.6e-17 Score=142.58 Aligned_cols=97 Identities=37% Similarity=0.742 Sum_probs=82.4
Q ss_pred CCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCCC
Q 005976 97 PFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176 (666)
Q Consensus 97 ~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~ 176 (666)
||||++.++|++|+||||+|++|+|+||+..+ . ...++|. ..++|+|++.|++...+.+|+|+|++...+..
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDG----S-ETRLPLT---EEYGGVWHGFLPGIKAGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCC----C-EEEEEcc---cccCCEEEEEECCCCCCCEEEEEECCccCccc
Confidence 69999999999999999999999999997422 1 2356774 34689999999999999999999999777888
Q ss_pred CccccCcceecCccceeeeeccccC
Q 005976 177 GHYFDPTKIVLDPYAKAVISRAQFG 201 (666)
Q Consensus 177 g~~~~~~~~~~DPya~~~~~~~~~~ 201 (666)
|+.+++.++++||||+++..+..|+
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~~~~~~ 97 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDGPLAYH 97 (103)
T ss_pred CcccCCCeEEecCCcceEcCCccCC
Confidence 8888888899999999997665554
No 43
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.61 E-value=2.5e-15 Score=132.71 Aligned_cols=94 Identities=30% Similarity=0.445 Sum_probs=75.2
Q ss_pred CCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCCCC
Q 005976 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (666)
Q Consensus 98 lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g 177 (666)
|||++.+++++|+||||+|++|+|+||+..+ ...+..+++|++ +++|+|+++|+++.++.+|+|+|++.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~--~~~~~~~~~m~~---~~~gvw~~~v~~~~~g~~Y~y~i~~~------ 69 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDD--QDKVLETVQMKR---GENGVWSVTLDGDLEGYYYLYEVKVY------ 69 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCC--CCCcceeEeeec---CCCCEEEEEeCCccCCcEEEEEEEEe------
Confidence 7999999999999999999999999997532 112234677753 57899999999999999999999864
Q ss_pred ccccCcceecCccceeeeeccccCCcC
Q 005976 178 HYFDPTKIVLDPYAKAVISRAQFGVLG 204 (666)
Q Consensus 178 ~~~~~~~~~~DPya~~~~~~~~~~~~~ 204 (666)
++....++||||+++..++.++++.
T Consensus 70 --~~~~~~~~DPyA~~~~~~~~~s~i~ 94 (100)
T cd02860 70 --KGETNEVVDPYAKALSANGERSVDL 94 (100)
T ss_pred --ceEEEEEcCcccEeEeeCCCceEEC
Confidence 1234578999999998887665443
No 44
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.61 E-value=1.2e-15 Score=186.66 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=82.7
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCC
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF 317 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~ 317 (666)
...+|-+.... .+||++++++|+||++|||++|||+||++... ..+|||++.||+
T Consensus 743 P~atyrlq~~~-----------~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~--------------gs~hGYdv~D~~ 797 (1693)
T PRK14507 743 PRATYRLQFHK-----------DFTFADAEAILPYLAALGISHVYASPILKARP--------------GSTHGYDIVDHS 797 (1693)
T ss_pred cceeEEEEeCC-----------CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCC--------------CCCCCCCCCCCC
Confidence 35688887765 68999999999999999999999999998532 125999999999
Q ss_pred CcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 005976 318 SPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 318 ~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 364 (666)
.+++.||+ .++|++||++||++||+||||+|+||++.
T Consensus 798 ~idp~lG~----------~edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 798 QINPEIGG----------EEGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred ccCcccCC----------HHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 99999998 99999999999999999999999999984
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.42 E-value=4e-13 Score=114.81 Aligned_cols=81 Identities=36% Similarity=0.635 Sum_probs=60.7
Q ss_pred CCCeEEeCC--cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCC-C-ceEEEEEcCcc
Q 005976 97 PFGATLRDG--GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFK-D-MLYGYKFDGKF 172 (666)
Q Consensus 97 ~lGa~~~~~--g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~-~-~~Y~y~i~~~~ 172 (666)
||||++.++ +++||||||+|++|+|+++..+ ....+.++|.. ...+|+|+++|++... + .+|.|+|++..
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~----~~~~~~~~m~~--~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG----SWPAEEYPMTR--KDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT----SSEEEEEEEEE--ECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee----cCCCceEEeee--cCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 799999986 9999999999999999998653 22346788863 3578999999996544 4 69999998652
Q ss_pred CCCCCccccCcceecCccc
Q 005976 173 SPQEGHYFDPTKIVLDPYA 191 (666)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya 191 (666)
| ....++||||
T Consensus 75 ----g----~~~~~~DPYA 85 (85)
T PF02922_consen 75 ----G----ETPEVVDPYA 85 (85)
T ss_dssp ----T----EEEEET-TT-
T ss_pred ----C----cEEEEeCCCC
Confidence 2 3457899997
No 46
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.37 E-value=9.4e-13 Score=156.96 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=78.3
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
-|+|.++.++|++|++||+|.|||+||++... .++.|+..||+.++|.||. ..++.++|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~---------------SnS~Ysi~Dyl~idP~~~~------~~~~~~d~ 186 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGG---------------SNSCYSLYDQLQLNQHFKS------QKDGKNDV 186 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCC---------------CCCCccccchhhcChhhcc------cCCcHHHH
Confidence 69999999999999999999999999998543 1367999999999999975 12458999
Q ss_pred HHHHHHHHHc-CCEEEEeeccccccCCCCC
Q 005976 340 KLLVREAHKR-GIEVVMDVVFNHTVEGNDK 368 (666)
Q Consensus 340 k~LV~~aH~~-GI~VIlDvV~NH~~~~~~~ 368 (666)
++||+++|++ ||+||+|+|+|||+.++.|
T Consensus 187 ~~lV~~~h~~~Gm~~ilDvV~NHTa~ds~W 216 (1464)
T TIGR01531 187 QALVEKLHRDWNVLSITDIVFNHTANNSPW 216 (1464)
T ss_pred HHHHHHHHHhcCCEEEEEeeecccccCCHH
Confidence 9999999997 9999999999999998765
No 47
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.2e-13 Score=147.79 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=73.9
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
||....+.||||++|||.|+|++|||.... ...|||+++|+..|+|.+|+ .+.|.+
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~p--------------GStHGYDVvD~t~InPeLGG----------~egl~r 72 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARP--------------GSTHGYDVVDPTEINPELGG----------EEGLER 72 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCC--------------CCCCCccCCCccccChhhcC----------hHHHHH
Confidence 799999999999999999999999998642 12599999999999999887 899999
Q ss_pred HHHHHHHcCCEEEEeeccccccCC
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVEG 365 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~~ 365 (666)
||+++|++||.+|+|+|+|||+.+
T Consensus 73 Lvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 73 LVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred HHHHHHhcCCceEEEecccchhcc
Confidence 999999999999999999999876
No 48
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.23 E-value=2.9e-11 Score=103.54 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=58.4
Q ss_pred CeEEeC-CcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCCCC
Q 005976 99 GATLRD-GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (666)
Q Consensus 99 Ga~~~~-~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g 177 (666)
||++.+ ++++|+||||+|++|+|+|++ . ..++|. ..++|+|+++++++ .+..|+|+|++.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~------~---~~~~m~---~~~~G~W~~~v~~~-~g~~Y~y~v~~~------ 61 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD------G---EEIPMQ---RDGDGWFEAEVPGA-AGTRYRYRLDDG------ 61 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC------C---CcccCc---cCCCcEEEEEeCCC-CCCeEEEEECCC------
Confidence 788887 899999999999999999874 1 235663 35689999999999 999999999732
Q ss_pred ccccCcceecCccceee
Q 005976 178 HYFDPTKIVLDPYAKAV 194 (666)
Q Consensus 178 ~~~~~~~~~~DPya~~~ 194 (666)
..+.||||+.+
T Consensus 62 ------~~~~DP~a~~~ 72 (85)
T cd02853 62 ------TPVPDPASRFQ 72 (85)
T ss_pred ------cCCCCCccccC
Confidence 24689999985
No 49
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.10 E-value=3.1e-10 Score=99.82 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=61.6
Q ss_pred eCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCC-------CCCceEEEEEcCccCCC
Q 005976 103 RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-------FKDMLYGYKFDGKFSPQ 175 (666)
Q Consensus 103 ~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-------~~~~~Y~y~i~~~~~~~ 175 (666)
.++|++||||||+|++|+|+ ++|++|.. ..++|.+ ...|+|+++||++ .++..|+|+|...
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~----GdFn~W~~-~~~~m~k---~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~---- 70 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLI----GDFNNWDR-NAHPLKK---DEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP---- 70 (99)
T ss_pred CCCeEEEEEECCCCCEEEEE----ccCCCCCC-cCcccEE---CCCCEEEEEECCcccccccCCCCCEEEEEEEeC----
Confidence 46789999999999999998 88988864 3456754 2579999999985 4899999999753
Q ss_pred CCccccCcceecCccceeeeec
Q 005976 176 EGHYFDPTKIVLDPYAKAVISR 197 (666)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~~~~ 197 (666)
+|.. ..+.||||+.+..+
T Consensus 71 ~G~~----~~~~DPyA~~~~~~ 88 (99)
T cd02854 71 SGEW----IDRIPAWIKYVTQD 88 (99)
T ss_pred CCCE----EEEcCcceeEEEeC
Confidence 2332 24789999998643
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.83 E-value=2.2e-08 Score=88.98 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=62.0
Q ss_pred CCCCeEEeC----CcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCc
Q 005976 96 TPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (666)
Q Consensus 96 ~~lGa~~~~----~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~ 171 (666)
..||+++.+ ++++||||+|.|++|+|++. ++.+.. ..++|.+ ....|+|++.++....+..|.|++.+.
T Consensus 8 ~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~----~~~~~~-~~~~m~~--~~~~G~w~~~v~~~~~~~~Y~~~v~~~ 80 (106)
T cd02855 8 EKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGD----FNGWDG-RRHPMRR--RGDSGVWELFIPGLGEGELYKYEILGA 80 (106)
T ss_pred HhcCCEEcccCCcCCEEEEEECCCCCEEEEEEE----CCCCCC-cceecEE--CCCCCEEEEEECCCCCCCEEEEEEECC
Confidence 369999988 89999999999999999852 222211 2346642 123799999999877777899999753
Q ss_pred cCCCCCccccCcceecCccceeeee
Q 005976 172 FSPQEGHYFDPTKIVLDPYAKAVIS 196 (666)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~ 196 (666)
.|.. ..+.|||++.+..
T Consensus 81 ----~g~~----~~~~DPYa~~~~~ 97 (106)
T cd02855 81 ----DGHL----PLKADPYAFYSEL 97 (106)
T ss_pred ----CCCE----EEeeCCCceeeEe
Confidence 1211 2468999998853
No 51
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.66 E-value=7.1e-08 Score=104.58 Aligned_cols=104 Identities=24% Similarity=0.313 Sum_probs=84.5
Q ss_pred CCCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCccc
Q 005976 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 235 ~~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
|...+.|.-+.... -|+|....++|..++++|+|.|++.|+++.+.. +--|...
T Consensus 4 pld~i~iQTvlsk~-----------~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S---------------~S~YSI~ 57 (423)
T PF14701_consen 4 PLDSISIQTVLSKW-----------MGPFSDWEKHLKVISEKGYNMIHFTPLQERGES---------------NSPYSIY 57 (423)
T ss_pred CCcceEEEEEhhhh-----------cCCHhHHHHHHHHHHHcCCcEEEecccccCCCC---------------CCCcccc
Confidence 44455665555544 689999999999999999999999999997541 1239999
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH-HcCCEEEEeeccccccCCCCC
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAH-KRGIEVVMDVVFNHTVEGNDK 368 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH-~~GI~VIlDvV~NH~~~~~~~ 368 (666)
|...+++.+..... ..+.+++++||++++ +.||.+|.|||+|||+.++.|
T Consensus 58 Dql~~~~~~~~~~~----~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 58 DQLKFDPDFFPPGK----ESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred chhhcChhhcCCCc----cccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 99999999876432 245799999999996 789999999999999998765
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.60 E-value=3e-07 Score=97.73 Aligned_cols=143 Identities=22% Similarity=0.317 Sum_probs=85.2
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
+-+.+.+.|+.|+++|+|+|++.-... +...+.+. +.|...+..... |.+ ..-+-|+.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~--gda~Y~S~------------~~p~s~~~~g~~-~~~-------pg~DpL~~ 74 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPR--GDALYPSD------------IEPWSGYLTGKQ-GKD-------PGFDPLEF 74 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeC--cEEEeccc------------ccccccccCCCC-CCC-------CCccHHHH
Confidence 456678889999999999999765432 11111110 111111110000 100 01456999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcccc---CCCCccCCCCCHHHHHHHHHHHHH
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY---SGCGNTFNCNHPVVRQFIVDCLRY 418 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~---~~~~~dln~~~p~vr~~i~d~l~~ 418 (666)
||++||++||+|..-+.+...... ..... ..++.++.....|..... .+...-||..+|+||++|++.++.
T Consensus 75 ~I~eaHkrGlevHAW~~~~~~~~~--~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~E 148 (311)
T PF02638_consen 75 MIEEAHKRGLEVHAWFRVGFNAPD--VSHIL----KKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKE 148 (311)
T ss_pred HHHHHHHcCCEEEEEEEeecCCCc--hhhhh----hcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHH
Confidence 999999999999998855543221 00010 122333322222221111 122234899999999999999999
Q ss_pred HHHhCCccEEEEec
Q 005976 419 WVTEMHVDGFRFDL 432 (666)
Q Consensus 419 W~~e~gIDGfR~D~ 432 (666)
.++.|.|||+.||-
T Consensus 149 iv~~YdvDGIhlDd 162 (311)
T PF02638_consen 149 IVKNYDVDGIHLDD 162 (311)
T ss_pred HHhcCCCCeEEecc
Confidence 99999999999993
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.57 E-value=2.5e-07 Score=79.15 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCC-ceEEEEEcCccCCCCCccccC
Q 005976 104 DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKD-MLYGYKFDGKFSPQEGHYFDP 182 (666)
Q Consensus 104 ~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~-~~Y~y~i~~~~~~~~g~~~~~ 182 (666)
+++++|+||||.|++|.|+++.. . ...++|.+ ...|+|+++++....+ +.|.|+++|.
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~----~---~~~~~m~~---~~~G~W~~~v~~l~~g~Y~Y~~~vdg~----------- 63 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWG----G---AGSHPMTK---DEAGVWSVTTGPLAPGIYTYSFLVDGV----------- 63 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecC----C---CccEeCeE---CCCeEEEEEECCCCCcEEEEEEEECCe-----------
Confidence 35799999999999999997642 1 23467754 3579999999654444 3566666642
Q ss_pred cceecCccceeee
Q 005976 183 TKIVLDPYAKAVI 195 (666)
Q Consensus 183 ~~~~~DPya~~~~ 195 (666)
.+.||+++...
T Consensus 64 --~~~DP~s~~~~ 74 (85)
T cd02858 64 --RVIDPSNPTTK 74 (85)
T ss_pred --EecCCCCCcee
Confidence 46899988663
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.38 E-value=4.5e-07 Score=107.04 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCC
Q 005976 96 TPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQ 175 (666)
Q Consensus 96 ~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~ 175 (666)
..||||....|+.|+||||+|.+|+|+ ++|+. ....||.+. ...|+|+++|| ...+..|+|+|..
T Consensus 19 ~~lGah~~~~g~~f~vwaP~A~~V~vv----gdfn~---~~~~~m~~~--~~~G~w~~~ip-~~~g~~YKy~i~~----- 83 (726)
T PRK05402 19 SVLGPHPTGAGLVVRALLPGAEEVWVI----LPGGG---RKLAELERL--HPRGLFAGVLP-RKGPFDYRLRVTW----- 83 (726)
T ss_pred HhcCCCCCCCcEEEEEECCCCeEEEEE----eecCC---CccccceEc--CCCceEEEEec-CCCCCCeEEEEEe-----
Confidence 468999988899999999999999997 67763 244577532 35799999999 9999999999973
Q ss_pred CCccccCcceecCccceee
Q 005976 176 EGHYFDPTKIVLDPYAKAV 194 (666)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~ 194 (666)
+|. ...+.||||...
T Consensus 84 ~g~----~~~k~DPyaf~~ 98 (726)
T PRK05402 84 GGG----EQLIDDPYRFGP 98 (726)
T ss_pred CCc----eeEeccccccCC
Confidence 232 246789999854
No 55
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.34 E-value=4.5e-06 Score=77.33 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=81.8
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
+-+++||++|+|+|.+.---- . -|-|-|+......|.+ + .+-|+++|++||
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h-~-----------------g~ayYPt~~~~~hp~L----------~-~Dllge~v~a~h 54 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH-G-----------------GYAYYPTKVGPRHPGL----------K-RDLLGEQVEACH 54 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc-c-----------------EEEEccCCCCcCCCCC----------C-cCHHHHHHHHHH
Confidence 456999999999999743100 0 1234555443333433 2 477999999999
Q ss_pred HcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCC-ccCCCCCHHHHHHHHHHHHHHHHhC
Q 005976 348 KRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCG-NTFNCNHPVVRQFIVDCLRYWVTEM 423 (666)
Q Consensus 348 ~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~-~dln~~~p~vr~~i~d~l~~W~~e~ 423 (666)
++||+|+.=+-++ ..+.. ...++.|+..+++|... .+...+ ..+..++ ..++++++.++..++.|
T Consensus 55 ~~Girv~ay~~~~-~d~~~---------~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 55 ERGIRVPAYFDFS-WDEDA---------AERHPEWFVRDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRY 123 (132)
T ss_pred HCCCEEEEEEeee-cChHH---------HHhCCceeeECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcC
Confidence 9999999866665 21110 13578899888888732 111111 1233334 45699999999999889
Q ss_pred CccEEEEec
Q 005976 424 HVDGFRFDL 432 (666)
Q Consensus 424 gIDGfR~D~ 432 (666)
.+|||=||.
T Consensus 124 ~~DGiF~D~ 132 (132)
T PF14871_consen 124 DVDGIFFDI 132 (132)
T ss_pred CCCEEEecC
Confidence 999998873
No 56
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=7.2e-06 Score=88.95 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=87.6
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
+=..+.+.|+.|+.||||+|+.. ....+...+.+.... -.++.|. .+..++ .-+-|+.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~q--V~~~G~~lypS~~~p------~s~~~~~-~~~~~~-------------g~DpLa~ 119 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQ--VWNDGDALYPSAVLP------WSDGLPG-VLGVDP-------------GYDPLAF 119 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEE--EecCccccccccccc------cccCcCc-ccCCCC-------------CCChHHH
Confidence 44567778999999999999944 332222222221100 0112211 011122 1455999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc-ccCCC--CccCCCCCHHHHHHHHHHHHH
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGC--GNTFNCNHPVVRQFIVDCLRY 418 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~-~~~~~--~~dln~~~p~vr~~i~d~l~~ 418 (666)
+|++||++||+|+--+-+--++..... +- ..++.+......+..+ ...++ ..=||-.+|+||++|.+.+..
T Consensus 120 ~I~~AHkr~l~v~aWf~~~~~a~~~s~--~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~e 193 (418)
T COG1649 120 VIAEAHKRGLEVHAWFNPYRMAPPTSP--LT----KRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVE 193 (418)
T ss_pred HHHHHHhcCCeeeechhhcccCCCCCh--hH----hhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHH
Confidence 999999999999999887777643210 00 1112222111111111 11111 234899999999999999999
Q ss_pred HHHhCCccEEEEecCCcc
Q 005976 419 WVTEMHVDGFRFDLASIM 436 (666)
Q Consensus 419 W~~e~gIDGfR~D~a~~l 436 (666)
-++.|.|||+.||---..
T Consensus 194 vV~~YdvDGIQfDd~fy~ 211 (418)
T COG1649 194 VVRNYDVDGIQFDDYFYY 211 (418)
T ss_pred HHhCCCCCceecceeecc
Confidence 999999999999954433
No 57
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.12 E-value=1.3e-05 Score=67.16 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCC-CCceEEEEEcCcc
Q 005976 105 GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF-KDMLYGYKFDGKF 172 (666)
Q Consensus 105 ~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~-~~~~Y~y~i~~~~ 172 (666)
++++|+||||.|++|.|+++..+ + ...++|.+ ..+|+|++.++... .+..|+|++++..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~----~--~~~~~~~~---~~~g~w~~~v~~~~~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNG----D--TQLIPMTK---VEDGYWEVELPLPSPGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECC----C--CCcccCEE---CCCceEEEEEcCCCCCCeEEEEEEeCCC
Confidence 68999999999999999998643 1 13456643 45699999999888 8999999998763
No 58
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.04 E-value=1.6e-05 Score=67.44 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCCCCccccCcce
Q 005976 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKI 185 (666)
Q Consensus 106 g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~~g~~~~~~~~ 185 (666)
.++|++|+|.|++|+|+ ++|++|. .++|.+ ...|+|+++++.....+.|+|.++|.+ .
T Consensus 3 ~vtf~~~ap~a~~V~v~----G~fn~W~---~~~m~~---~~~G~w~~~~~l~~G~y~Ykf~vdg~~------------~ 60 (82)
T cd02861 3 PVVFAYRGPEADSVYLA----GSFNNWN---AIPMER---EGDGLWVVTVELRPGRYEYKFVVDGEW------------V 60 (82)
T ss_pred cEEEEEECCCCCEEEEE----eECCCCC---cccCEE---CCCCcEEEEEeCCCCcEEEEEEECCEE------------e
Confidence 48999999999999997 7788775 356653 245899999984433348888887642 2
Q ss_pred ecCccceeee
Q 005976 186 VLDPYAKAVI 195 (666)
Q Consensus 186 ~~DPya~~~~ 195 (666)
+.||.+....
T Consensus 61 ~~DP~~~~~~ 70 (82)
T cd02861 61 IVDPNAAAYV 70 (82)
T ss_pred eCCCCCCcee
Confidence 4799887653
No 59
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.65 E-value=0.00011 Score=82.61 Aligned_cols=112 Identities=19% Similarity=0.274 Sum_probs=64.5
Q ss_pred CCCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccC
Q 005976 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (666)
Q Consensus 236 ~~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~d 315 (666)
...-||||=+-- |..-.... -.-+..-|++..+-+|++|||..||-|-+.+.....+-. +.-.-||.-.|
T Consensus 562 LDSqvIYEgFSN-FQ~~~t~~--~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLD-------SiiqNGYAFtD 631 (809)
T PF02324_consen 562 LDSQVIYEGFSN-FQDFPTTP--SEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLD-------SIIQNGYAFTD 631 (809)
T ss_dssp HHT-EEEE---T-TB---SSG--GGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHH-------HHTT-SSSBS-
T ss_pred hhcchhhccccc-cccCCCCh--HHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchh-------hHhhcCccccc
Confidence 456799994321 22211111 134678888999999999999999999887644211000 01124899888
Q ss_pred CCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeecccccc
Q 005976 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 363 (666)
Q Consensus 316 y~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~ 363 (666)
-|.+-- . .|..+|+.++|+..|+++|+.||+||.|+|++.+.
T Consensus 632 RYDLg~--s----~ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 632 RYDLGM--S----KPTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp TT-SSS--S----S-BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred hhhhcC--C----CCCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 876632 1 24467779999999999999999999999999874
No 60
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.45 E-value=0.00074 Score=71.91 Aligned_cols=136 Identities=14% Similarity=0.195 Sum_probs=88.2
Q ss_pred chhhhhhhhHHHHHcC--CceEEECccccccccccccccCcCCCCCccccCCcccCCCCcC-CCCCCCCccCCCCCcHHH
Q 005976 262 TYLGVVEKLDHLKDLG--INCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM-ISYSSAGIRNCGHDAINE 338 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LG--vnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d-~~ygt~~~~~~~~g~~~e 338 (666)
+-..+.+.++.+++.| +++|+|=.=+.. +|.-.+ |..+ .+|- +
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~--------------------~~~~~~-f~~d~~~FP-------------d 67 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMK--------------------EFQWCD-FEFDPDRFP-------------D 67 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEeccccc--------------------CCccee-eEECcccCC-------------C
Confidence 4566777889999999 566665442221 111112 2333 2442 2
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.+.||+++|++|++|++-+.+ ++..++.. ++......|+..+.+|..+ .|.+...-+|+.+|++++++.+.
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~~-----~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 141 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSPL-----FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDK 141 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCchh-----HHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHH
Confidence 789999999999999999875 45443321 1111223445544444432 12233346899999999999999
Q ss_pred HHHHHHhCCccEEEEecCCcccc
Q 005976 416 LRYWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a~~l~~ 438 (666)
++.++ ++|||||-+|....++.
T Consensus 142 ~~~~~-~~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 142 LKPLL-DMGVDCFKTDFGERIPT 163 (308)
T ss_pred HHHHH-HhCCcEEecCCCCCCCc
Confidence 99988 69999999998887764
No 61
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.42 E-value=0.0018 Score=71.05 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
++.|+.|++.+|++||+.=|-+-+--++.++... ..+++|....++.... ....+--||+.+|+|++++.+.
T Consensus 103 P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~-------~~hPdw~l~~~~~~~~-~~r~~~vLD~~~pev~~~l~~~ 174 (394)
T PF02065_consen 103 PNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLY-------REHPDWVLRDPGRPPT-LGRNQYVLDLSNPEVRDYLFEV 174 (394)
T ss_dssp TTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHC-------CSSBGGBTCCTTSE-E-CBTTBEEB-TTSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHCCCeEEEEeccccccchhHHH-------HhCccceeecCCCCCc-CcccceEEcCCCHHHHHHHHHH
Confidence 4569999999999999999999888777665432 2456665443332211 1111235999999999999999
Q ss_pred HHHHHHhCCccEEEEecCCccc
Q 005976 416 LRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
+...++++|||.|.+|....+.
T Consensus 175 i~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 175 IDRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp HHHHHHHTT-SEEEEE-TS-TT
T ss_pred HHHHHHhcCCCEEEeccccCCC
Confidence 9999999999999999877664
No 62
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.41 E-value=0.0014 Score=69.68 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCC-Ccc---ccCCCCccCCCCCHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKG-EFY---NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g-~~~---~~~~~~~dln~~~p~vr~~i~d 414 (666)
.+.||+++|++|+++++-+-+ ++..++. . ++......|+..++.| ... .+.+...-+|+.||++|+.+.+
T Consensus 72 p~~mi~~l~~~G~k~~l~i~P-~i~~~s~---~--~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLWVHP-FINTDSE---N--FREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLS 145 (303)
T ss_pred HHHHHHHHHHCCCeEEEEECC-eeCCCCH---H--HHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHH
Confidence 899999999999999998887 3443321 1 1111223455555444 211 2234445689999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCc
Q 005976 415 CLRYWVTEMHVDGFRFDLASI 435 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~~ 435 (666)
.++..+.++|||||-+|....
T Consensus 146 ~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 146 RLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHHhCCcEEEeCCCCc
Confidence 999999899999999998663
No 63
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.00034 Score=80.34 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=72.6
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
-|.|.....+|.-+|+-|+|.|++.|++|-... +--|...|...+++.+.... +.=+.+|.
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S---------------~S~YSl~dql~~~~~~~~~~----~k~s~eDV 198 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLS---------------RSCYSLADQLELNPDFSRPN----RKYSFEDV 198 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccC---------------CCccchHhhhhcChhhhccC----CCCCHHHH
Confidence 588999999999999999999999999996531 12477777777777776421 11248999
Q ss_pred HHHHHHHHHc-CCEEEEeeccccccCCCCC
Q 005976 340 KLLVREAHKR-GIEVVMDVVFNHTVEGNDK 368 (666)
Q Consensus 340 k~LV~~aH~~-GI~VIlDvV~NH~~~~~~~ 368 (666)
++||+.+|+. +|--|-|||+||++..+.|
T Consensus 199 ~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 199 GQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred HHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 9999999965 9999999999999987654
No 64
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.10 E-value=0.0013 Score=71.03 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCC-ccccCCCCCccceeeCCCCCcc----ccCCCCccCCCCCHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGP-ILSFRGVDNSVYYMLAPKGEFY----NYSGCGNTFNCNHPVVRQFI 412 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~~~~~~~~~~~y~~~~~g~~~----~~~~~~~dln~~~p~vr~~i 412 (666)
+.+.||+++|++|++|++-+.+--....+.... ...+.......|+..+..|..+ .|.|...-+|+.||++++..
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww 165 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWW 165 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHH
Confidence 489999999999999998655422111010000 0001111123455555555432 23344456999999999999
Q ss_pred HHHHHHHHHhCCccEEEEecCCcc
Q 005976 413 VDCLRYWVTEMHVDGFRFDLASIM 436 (666)
Q Consensus 413 ~d~l~~W~~e~gIDGfR~D~a~~l 436 (666)
.+.++.+++++|||||-+|+...+
T Consensus 166 ~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 166 MEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHhcCCcEEEecCCCcc
Confidence 999999998899999999987643
No 65
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.90 E-value=0.0019 Score=69.00 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred chhhhhhhhHHHHHcCC--ceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCC-CCCCCCccCCCCCcHHH
Q 005976 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMI-SYSSAGIRNCGHDAINE 338 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGv--naI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~-~ygt~~~~~~~~g~~~e 338 (666)
+-..+.+.++.+++.|| ++|+|- .+... ....+||....-|..|+ +| -+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~--------------~~~~~g~~~~~~f~~d~~~F-------------Pd 72 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGR--------------RETSFGDRLWWNWEWDPERY-------------PG 72 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCc--------------ccccccceeeeeeEEChhhC-------------CC
Confidence 56778888888888765 567764 22100 00112332110022222 23 23
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.++||+++|++|++||+-+. .++..+... . ++......|+..+++|..+ .+.+...-+|+.||++|+...+.
T Consensus 73 p~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~--~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 147 (317)
T cd06594 73 LDELIEELKARGIRVLTYIN-PYLADDGPL--Y--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQV 147 (317)
T ss_pred HHHHHHHHHHCCCEEEEEec-CceecCCch--h--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHH
Confidence 79999999999999999655 344332211 1 1222233455555555432 23334456899999999999999
Q ss_pred HHHHHHhCCccEEEEecCCccc
Q 005976 416 LRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
++..+.++|||||=+|+-..++
T Consensus 148 ~~~~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 148 IKEMLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HHHHhhhcCCcEEEecCCCCCC
Confidence 9998778999999999876554
No 66
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.87 E-value=0.0021 Score=72.63 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=73.6
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHH---------hCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChH
Q 005976 398 GNTFNCNHPVVRQFIVDCLRYWVT---------EMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPP 468 (666)
Q Consensus 398 ~~dln~~~p~vr~~i~d~l~~W~~---------e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~ 468 (666)
.+|++-+||.|+..-+.+|-|.+. +..+||||+||+..+..+. ..- . ..
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADl--Lqi--------a------------~d 200 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADL--LQI--------A------------GD 200 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THH--HHH--------H------------HH
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHH--HHH--------H------------HH
Confidence 378999999999999999999986 6889999999999987320 000 0 00
Q ss_pred HHHHHhc-C---CCCCCceEEEeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccC
Q 005976 469 LIDLISN-D---PILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQG 544 (666)
Q Consensus 469 ~~~~i~~-~---~~~~~~~liaE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~ 544 (666)
..++.-. + ....+-+.|-|.|......-.-. +-+.--.++..++..+...|.......+.+...+..+-..-..
T Consensus 201 yfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~--~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~ 278 (809)
T PF02324_consen 201 YFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKD--TGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSN 278 (809)
T ss_dssp HHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHH--TTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSE
T ss_pred HHHHHhCCCcChhhHhhhheeeeccccCChHHHhc--CCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhccccc
Confidence 1111111 1 00113356789997663211100 0011224567788888888776554555555555543211110
Q ss_pred --CCCCCcceEEecccCCCC
Q 005976 545 --GGRKPWNSINFVCAHDGF 562 (666)
Q Consensus 545 --~~~~p~~~infv~nHD~~ 562 (666)
..........||.+||..
T Consensus 279 d~~en~a~pNYsFvrAHDse 298 (809)
T PF02324_consen 279 DSTENEAQPNYSFVRAHDSE 298 (809)
T ss_dssp E--SSESS-EEEES-BSSTT
T ss_pred CCcCCcccCceeeeecccHH
Confidence 112234567899999985
No 67
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.62 E-value=0.0055 Score=66.16 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHHHH
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCL 416 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d~l 416 (666)
++||+++|++|++|++-+.+. +..+........++......||..+..|..+ .|.|...-+|+.||++++...+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~-v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPA-ISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCc-cccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 999999999999999976543 3222100001111111123455555555432 233444558999999999999999
Q ss_pred HHHHHhCCccEEEEecCCc
Q 005976 417 RYWVTEMHVDGFRFDLASI 435 (666)
Q Consensus 417 ~~W~~e~gIDGfR~D~a~~ 435 (666)
+.++.++|||||=+|....
T Consensus 148 ~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHHhcCCCcEEEecCCCC
Confidence 9999789999999997653
No 68
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.60 E-value=0.0049 Score=65.98 Aligned_cols=90 Identities=19% Similarity=0.346 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc--ccCCCCccCCCCCHHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY--NYSGCGNTFNCNHPVVRQFIVDCL 416 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~--~~~~~~~dln~~~p~vr~~i~d~l 416 (666)
.++||+++|++|++||+-+. .++..++. .+.......|+..+..|..+ .|.+...-+|+.||++++...+.+
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~-----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 141 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETE-----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQL 141 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCCh-----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHH
Confidence 68999999999999999554 33433321 11112223455544443322 233334569999999999988877
Q ss_pred HHHHHhCCccEEEEecCC
Q 005976 417 RYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 417 ~~W~~e~gIDGfR~D~a~ 434 (666)
+..+.++|||||=+|...
T Consensus 142 ~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 142 KKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHhhcCCCcEEEecCCC
Confidence 766669999999999875
No 69
>PLN02635 disproportionating enzyme
Probab=96.59 E-value=0.0072 Score=68.59 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecc--ccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccC------CCCCH-
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVF--NHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTF------NCNHP- 406 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~--NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dl------n~~~p- 406 (666)
..+++++.+.||++||+||-|+.+ ++-+.+ .| .++.+|..+..|....-.|+.||. |+++|
T Consensus 223 ~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaD-vW---------a~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~ 292 (538)
T PLN02635 223 QRQWQAVRSYANEKGISIIGDMPIYVGGHSAD-VW---------ANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPL 292 (538)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccCCCcHH-Hh---------cCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcC
Confidence 456888999999999999999985 333322 11 234444444332222111222210 12221
Q ss_pred ---H-----HHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCc--cccCcccccCCCCCChHHHHHHhcC
Q 005976 407 ---V-----VRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGI--PIEGDLLTTGTPLRSPPLIDLISND 476 (666)
Q Consensus 407 ---~-----vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~i~~~ 476 (666)
. -.+..++.|++-++ .+|.+|+|....+. .+|.-. .|+ ..+|..+. -+...++..|.+
T Consensus 293 y~w~~l~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~---r~W~IP--~g~~ta~~G~wv~----~Pg~~l~~~l~~- 360 (538)
T PLN02635 293 YDWKAMAKDGYSWWAGRMRRALE--LYDEFRIDHFRGFA---GYWAVP--ADAKTAMNGRWKV----GPGKSFFDAIKK- 360 (538)
T ss_pred cCHHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhh---eeeecc--CCCCCCCCCeeee----CCHHHHHHHHHH-
Confidence 1 12345566666665 67889999887764 244321 111 12222221 112346666655
Q ss_pred CCCCCceEEEee
Q 005976 477 PILRGVKLIAEA 488 (666)
Q Consensus 477 ~~~~~~~liaE~ 488 (666)
..++..+|||.
T Consensus 361 -~~~~~~vIaED 371 (538)
T PLN02635 361 -AVGKIDIIAED 371 (538)
T ss_pred -HcCCCCEEEee
Confidence 44578899995
No 70
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=96.59 E-value=0.00082 Score=79.14 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhcCceeccccccccCcCCCCCCCCCCCCcccccccccccc
Q 005976 609 RRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISGT 662 (666)
Q Consensus 609 ~~~~~r~a~alllt~pGiP~Iy~GdE~G~t~~gn~n~y~~~~~~n~~dw~~~~~ 662 (666)
.....+.+.++.||+||||+||||+|+++....+ ++....+||.....
T Consensus 643 G~~nsLsq~lLklT~PGvPdIYqGtE~wd~slvD------PDNRRpvd~~~r~~ 690 (825)
T TIGR02401 643 GLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSLVD------PDNRRPVDYAARRA 690 (825)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccccccccCCCC------CCccCCCChHHHHH
Confidence 3445566778889999999999999999977432 22234466654433
No 71
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.33 E-value=0.034 Score=59.01 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=85.1
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHH
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk 340 (666)
|+=..+.+.|+.|++-|+|+|-+-= -. + .+.-.|....-.+ ...|. ....+.+++
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVIDv----Kd-----------d--~G~i~y~s~~~~~--~~~ga------~~~~i~D~~ 64 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVIDV----KD-----------D--DGNITYDSQVPLA--REIGA------VKPYIKDLK 64 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEE----ec-----------C--CceEEecCCCchh--hhccc------ccccccCHH
Confidence 3334566678999999999998531 00 0 0112233322111 11222 111257899
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc-ccCCCCccCCCCCHHHHHHHHHHHHHH
Q 005976 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGNTFNCNHPVVRQFIVDCLRYW 419 (666)
Q Consensus 341 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~-~~~~~~~dln~~~p~vr~~i~d~l~~W 419 (666)
.|+++||++||.+|.-+|.=- +. .+. ..++.|.....+|... +..+ ..=+|.-+++||+|++++.+..
T Consensus 65 ~l~~~l~e~gIY~IARIv~Fk---D~----~la---~~~pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i~IA~Ea 133 (316)
T PF13200_consen 65 ALVKKLKEHGIYPIARIVVFK---DP----VLA---EAHPEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNIDIAKEA 133 (316)
T ss_pred HHHHHHHHCCCEEEEEEEEec---Ch----HHh---hhChhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988522 11 111 1133443333333222 1111 2237888999999999999999
Q ss_pred HHhCCccEEEEecCCccc
Q 005976 420 VTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 420 ~~e~gIDGfR~D~a~~l~ 437 (666)
+ ..|+|.+.||-+..-.
T Consensus 134 a-~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 134 A-KLGFDEIQFDYIRFPD 150 (316)
T ss_pred H-HcCCCEEEeeeeecCC
Confidence 8 8999999999876544
No 72
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.33 E-value=0.01 Score=63.52 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d 414 (666)
+.++||+.+|++|++|++-+.+- +..+... + .+.......|+..+..|..+ .|.|...-+|+.||++++...+
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~~~-~--~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~ 140 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQNY-S--PFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAG 140 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCCCC-h--HHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHH
Confidence 36899999999999999966543 3222111 1 11111123455555554422 2333334689999999999999
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 005976 415 CLRYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~ 434 (666)
.++..+.++|||||=+|...
T Consensus 141 ~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 141 LFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHhhcCCCceEEeeCCC
Confidence 99998889999999999764
No 73
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.32 E-value=0.0084 Score=64.14 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCc-c---ccCCCCccCCCCCHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF-Y---NYSGCGNTFNCNHPVVRQFIV 413 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~-~---~~~~~~~dln~~~p~vr~~i~ 413 (666)
+.++||+++|++|++|++-+.+-- ..+++ . ++......|+..+..|.. . .|.+...-+|+.||++++...
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~i-~~~~~---~--y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPGL-LQDHP---R--YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcc-cCCCH---H--HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHH
Confidence 378999999999999999665443 22221 1 221222345544433321 1 223333468999999999999
Q ss_pred HHHHHHHHhCCccEEEEecCC
Q 005976 414 DCLRYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 414 d~l~~W~~e~gIDGfR~D~a~ 434 (666)
+.++.-+.+.|||||=+|...
T Consensus 148 ~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 148 EGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHHhcCCCcEEEecCCC
Confidence 999777669999999999765
No 74
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.26 E-value=0.036 Score=64.55 Aligned_cols=138 Identities=11% Similarity=-0.012 Sum_probs=79.2
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCc-CCCCCCCCccCCCCCcHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSP-MISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~-d~~ygt~~~~~~~~g~~~efk 340 (666)
+-+.+...|+.||++|+|+|+|.......+...+. . -|-|..+.-. ++- -+.+.
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~-------s-----~yfP~~~lp~r~d~-------------f~~~a 386 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVK-------E-----LYFPNRLLPMRADL-------------FNRVA 386 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcccc-------c-----cccCccccccccCC-------------cCHHH
Confidence 35677788999999999999998875543211110 0 1333322211 111 12233
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHH
Q 005976 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 420 (666)
Q Consensus 341 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~ 420 (666)
-.+ +|++|++|..-+-+=-..-.... +. ...... ..+.......+...|+..+|+||+.|.++..-.+
T Consensus 387 w~l--~~r~~v~v~AWmp~~~~~~~~~~-~~--------~~~~~~-~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla 454 (671)
T PRK14582 387 WQL--RTRAGVNVYAWMPVLSFDLDPTL-PR--------VKRLDT-GEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLA 454 (671)
T ss_pred HHH--HHhhCCEEEEeccceeeccCCCc-ch--------hhhccc-cCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 333 99999999888765433211100 00 000000 0000000001234589999999999999999999
Q ss_pred HhCCccEEEEecCCcc
Q 005976 421 TEMHVDGFRFDLASIM 436 (666)
Q Consensus 421 ~e~gIDGfR~D~a~~l 436 (666)
+.+.|||+-||-=..+
T Consensus 455 ~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 455 GHAAFDGILFHDDAVL 470 (671)
T ss_pred HhCCCceEEecccccc
Confidence 8899999999854444
No 75
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.01 E-value=0.071 Score=60.90 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=72.7
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
+.....+.|+.|+++-||.|++==.+-.......... +=-...|..+..+. -..+-+|.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~-----------~~~~~~w~D~~~r~----------i~~~~Vk~ 174 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTN-----------GQPDQTWTDWANRQ----------ISTSTVKD 174 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS------------EEE-TT-TTT--E----------EEHHHHHH
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCC-----------CchhhhhhhhcCCE----------ehHHHHHH
Confidence 5677788899999999999997432221111000000 00000111111111 22788999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeC-CCC-Ccc--ccC-CC---CccCCCCCHHHHHHHH
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA-PKG-EFY--NYS-GC---GNTFNCNHPVVRQFIV 413 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~-~~g-~~~--~~~-~~---~~dln~~~p~vr~~i~ 413 (666)
+|++||+.||++|. +|-+...... . .-.|.. +.|+... +.+ ... ... ++ .--+|..++.=|++|+
T Consensus 175 yI~~ah~~Gmkam~---Ynmiyaa~~~--~-~~~gv~-~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~ 247 (559)
T PF13199_consen 175 YINAAHKYGMKAMA---YNMIYAANNN--Y-EEDGVS-PEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYII 247 (559)
T ss_dssp HHHHHHHTT-EEEE---EEESSEEETT-----S--SS--GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHH
T ss_pred HHHHHHHcCcceeh---hHhhhccccC--c-ccccCC-chhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHH
Confidence 99999999999987 3333211100 0 011222 2233222 221 111 111 11 1236889999999999
Q ss_pred HHHHHHHHhCCccEEEEecCCcc
Q 005976 414 DCLRYWVTEMHVDGFRFDLASIM 436 (666)
Q Consensus 414 d~l~~W~~e~gIDGfR~D~a~~l 436 (666)
+.+...++.+|+|||.+|..+..
T Consensus 248 ~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 248 NQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHccCCceEeeeccCCC
Confidence 99999999999999999988744
No 76
>PRK10426 alpha-glucosidase; Provisional
Probab=95.94 E-value=0.044 Score=64.08 Aligned_cols=95 Identities=9% Similarity=0.161 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccc---cCCCCccCCCCCHHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN---YSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~---~~~~~~dln~~~p~vr~~i~d 414 (666)
+.++||+++|++|++|++-+-+--. .++. .++......|+..+.+|.-+. +.+...-+|+.||++|+...+
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v~-~~~~-----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~ 343 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYLA-SDGD-----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKE 343 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCccC-CCCH-----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHH
Confidence 3789999999999999998665322 2211 111112234555555544321 222234689999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCcccc
Q 005976 415 CLRYWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~~l~~ 438 (666)
.++..+.++|||||-.|.-..++.
T Consensus 344 ~~~~~~~~~Gvdg~w~D~~E~~p~ 367 (635)
T PRK10426 344 VIKKNMIGLGCSGWMADFGEYLPT 367 (635)
T ss_pred HHHHHHhhcCCCEEeeeCCCCCCC
Confidence 988777799999999998776654
No 77
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=95.90 E-value=0.061 Score=60.94 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccC------CCC----C
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTF------NCN----H 405 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dl------n~~----~ 405 (666)
..+++++.+.||++||+||-|+.+-=...+.+. ..++.+|..+..|....-.|+.||. |++ +
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDv--------Wa~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~ 268 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIYVAYDSADV--------WANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYN 268 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecccCCCCHHH--------HcChhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCCcC
Confidence 467888999999999999999987433222110 1233444443332221111221110 111 2
Q ss_pred HHH-----HHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCC
Q 005976 406 PVV-----RQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILR 480 (666)
Q Consensus 406 p~v-----r~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~ 480 (666)
+.+ .+..++.|++-++ .+|.+|+|.+-.+.+ +|.-.........|..+. -+...++..+... ..
T Consensus 269 w~~l~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r---~W~IP~~~~~a~~G~~v~----~p~~~l~~~l~~e--~~ 337 (497)
T PRK14508 269 WDALRKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEA---YWEIPAGEKTAINGRWVP----GPGKDLFEAVKEE--LG 337 (497)
T ss_pred HHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhce---eeeecCCCCCCCCCeeec----CCHHHHHHHHHHH--hC
Confidence 222 2346666766664 778899998877642 343110000011222221 1123466666653 36
Q ss_pred CceEEEee
Q 005976 481 GVKLIAEA 488 (666)
Q Consensus 481 ~~~liaE~ 488 (666)
+..+|||.
T Consensus 338 ~~~vigED 345 (497)
T PRK14508 338 DLPIIAED 345 (497)
T ss_pred CCCEEEeE
Confidence 78999995
No 78
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.82 E-value=0.017 Score=67.62 Aligned_cols=94 Identities=14% Similarity=0.281 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d 414 (666)
+.+.||+++|++|++|++-+.+ +...++. .++......|+..+++|..+ .|.+...-+|+.||++|+...+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~-----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~ 399 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP-----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYAD 399 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch-----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHH
Confidence 3688999999999999997665 2332221 11111223456666666543 2334345689999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCcccc
Q 005976 415 CLRYWVTEMHVDGFRFDLASIMTR 438 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~~l~~ 438 (666)
.++.++ ++|||||-.|....++.
T Consensus 400 ~~~~l~-d~Gvdgfw~D~gE~~p~ 422 (665)
T PRK10658 400 KLKGLL-DMGVDCFKTDFGERIPT 422 (665)
T ss_pred HHHHHH-hcCCcEEEecCCceeec
Confidence 999987 89999999998776654
No 79
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=95.78 E-value=0.0058 Score=72.56 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccc
Q 005976 401 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 401 ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
+..++|+|-+.....+..|+++=-|||+|+|.+..+.
T Consensus 270 lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~ 306 (879)
T PRK14511 270 VRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLA 306 (879)
T ss_pred eecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCcccc
Confidence 5668999999999999999988889999999998885
No 80
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.76 E-value=0.012 Score=65.98 Aligned_cols=96 Identities=22% Similarity=0.376 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d 414 (666)
++++|++.+|++|++|++-+.+.=. ..+. ....++......++..++.|..+ .|.+...-+|+.+|++++.+.+
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~v~-~~~~--~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 160 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPFVS-NDSP--DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKE 160 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESEEE-TTTT--B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecccC-CCCC--cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHH
Confidence 5899999999999999998887433 2221 01111111223445445555322 2333345689999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCcc
Q 005976 415 CLRYWVTEMHVDGFRFDLASIM 436 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~~l 436 (666)
.++..++.+|||||-+|.....
T Consensus 161 ~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 161 QLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHhccCCceEEeecCCcc
Confidence 9999997779999999985544
No 81
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.74 E-value=0.031 Score=46.98 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCc
Q 005976 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (666)
Q Consensus 106 g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~ 171 (666)
.|+|+..+ .|++|.|. |+|++|.. .+||.+. .++ |.+.++-....+.|+|.|+|.
T Consensus 3 ~v~f~~~~-~a~~V~v~----G~F~~W~~--~~pm~~~---~~~-~~~~~~L~~g~y~YkF~Vdg~ 57 (79)
T cd02859 3 PTTFVWPG-GGKEVYVT----GSFDNWKK--KIPLEKS---GKG-FSATLRLPPGKYQYKFIVDGE 57 (79)
T ss_pred EEEEEEcC-CCcEEEEE----EEcCCCCc--cccceEC---CCC-cEEEEEcCCCCEEEEEEECCE
Confidence 47888877 88999998 78888864 4777542 334 999987545556888888765
No 82
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.63 E-value=0.027 Score=60.85 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.++|++++|++|++|++-+.+ |+..+.. ...++......||..+.+|..+ .|.+...-+|+.+|++++...+.
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P-~v~~~~~---~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDP-GVKVDPG---YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSL 141 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeC-ceeCCCC---ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHH
Confidence 689999999999999987654 2221110 1111111123445445554422 23333345799999999999999
Q ss_pred HHHHHHhCCccEEEEecCCc
Q 005976 416 LRYWVTEMHVDGFRFDLASI 435 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a~~ 435 (666)
++..+ +.|||||-+|....
T Consensus 142 ~~~~~-~~Gvdg~w~D~~Ep 160 (339)
T cd06604 142 YKKFV-DLGVDGIWNDMNEP 160 (339)
T ss_pred HHHHh-hCCCceEeecCCCc
Confidence 99987 89999999997653
No 83
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.37 E-value=0.035 Score=59.37 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccc-eeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVY-YMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~-y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d 414 (666)
.++||+++|++|++|++-+.+- +..+++ . ++......| +.....|..+ .|.+...-+|+.||++++...+
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P~-v~~~~~---~--y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEPF-VLKNSK---N--WGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHD 145 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcCc-ccCCch---h--HHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHH
Confidence 6889999999999999987533 222221 1 111111223 3333333322 2333345689999999999999
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 005976 415 CLRYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~ 434 (666)
.++... ++|||||=+|...
T Consensus 146 ~~~~~~-~~Gvdg~w~D~~E 164 (317)
T cd06598 146 NYKKLI-DQGVTGWWGDLGE 164 (317)
T ss_pred HHHHhh-hCCccEEEecCCC
Confidence 999885 8999999999765
No 84
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=94.70 E-value=0.074 Score=57.49 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d 414 (666)
+.+.||+++|++|++||+-+.+--..... ...++......|+..++.|..+ .|.|...-+|+.||++++...+
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~----~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG----YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWAS 140 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC----CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHH
Confidence 36899999999999999987654332110 0011111223455555554322 2444445789999999999999
Q ss_pred HHHHHHH--hCCccEEEEecCC
Q 005976 415 CLRYWVT--EMHVDGFRFDLAS 434 (666)
Q Consensus 415 ~l~~W~~--e~gIDGfR~D~a~ 434 (666)
.++..+. ..|||||=+|+..
T Consensus 141 ~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 141 LFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHhhcccCCCceEEeccCC
Confidence 9998875 4699999999754
No 85
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.08 E-value=0.099 Score=55.29 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHH
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~ 417 (666)
+.+.||+++|++|++||+-+.+........ . .++. +..... .....+...-+|+.+|+.++...+.+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~--~--~y~~------~~~~~~--~~~~~~~~~~~D~tnp~a~~~w~~~~~ 142 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHE--D--QYPE------MAKALG--VDPATEGPILFDLTNPKFMDAYFDNVH 142 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCc--H--HHHH------HHHhcC--CCcccCCeEEecCCCHHHHHHHHHHHH
Confidence 379999999999999999887643111100 0 0000 000000 000111113578999999987777776
Q ss_pred HHHHhCCccEEEEecCC
Q 005976 418 YWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 418 ~W~~e~gIDGfR~D~a~ 434 (666)
.-+.++|||||=.|.-.
T Consensus 143 ~~~~~~Gidg~W~D~~E 159 (292)
T cd06595 143 RPLEKQGVDFWWLDWQQ 159 (292)
T ss_pred HHHHhcCCcEEEecCCC
Confidence 66668999999999643
No 86
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=93.81 E-value=0.22 Score=56.67 Aligned_cols=131 Identities=21% Similarity=0.280 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCC-CCccccCCCCcc------CCCCCH--
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK-GEFYNYSGCGNT------FNCNHP-- 406 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~-g~~~~~~~~~~d------ln~~~p-- 406 (666)
.++++++-+.|+.+||++|-|+.+-=...+.+. ..++..|..+.. |... -.++.|| -++++|
T Consensus 211 ~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDv--------Wa~~~~F~l~~~~GaP~-~agvpPd~Fs~~GQ~WG~P~y 281 (513)
T TIGR00217 211 FSQFQALKRYANDMGIGLYGDLPVFVAYDSADV--------WADPELFCLRASAGAPK-PAGLGPDYFLEQGQNWGLPPY 281 (513)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCcceeCCCcHHH--------HhCHHHhCCCcccCCCC-CCCCCCCcccccCCCCCCCCc
Confidence 456778888899999999999987543222110 123334443322 2221 1111111 112221
Q ss_pred --H-----HHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCc--cccCcccccCCCCCChHHHHHHhcCC
Q 005976 407 --V-----VRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGI--PIEGDLLTTGTPLRSPPLIDLISNDP 477 (666)
Q Consensus 407 --~-----vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~i~~~~ 477 (666)
. -.+..++.|++-++ .+|++|+|....+. .+|.- ..|+ ..+|..+. -+...++..|....
T Consensus 282 ~w~~l~~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~---r~w~I--P~g~~ta~~G~wv~----~Pg~~l~~~l~~e~ 350 (513)
T TIGR00217 282 DWNVLKARGYEWWIKRLGANMQ--YADILRIDHFRGFV---SLWWV--PAGESTAFNGAWVH----YPGDDFFNILANES 350 (513)
T ss_pred CHHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhc---eeeee--cCCCCCCCCCeeEe----CCHHHHHHHHHHHc
Confidence 1 12345566666664 67889999887765 24432 1111 11222221 12234676666643
Q ss_pred CCCC-ceEEEee
Q 005976 478 ILRG-VKLIAEA 488 (666)
Q Consensus 478 ~~~~-~~liaE~ 488 (666)
++ ..+|||.
T Consensus 351 --~~~~~vIaED 360 (513)
T TIGR00217 351 --KDNLKIIGED 360 (513)
T ss_pred --CCCCcEEeee
Confidence 33 7899995
No 87
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.63 E-value=0.13 Score=61.13 Aligned_cols=92 Identities=20% Similarity=0.323 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCC---CCccCCCCCHHHHHHHHH-
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSG---CGNTFNCNHPVVRQFIVD- 414 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~---~~~dln~~~p~vr~~i~d- 414 (666)
.|.||+.+|++||++|.=+.+.-..+. +. ++......|+..+++|..+.+.. ...-+|+.||++|+...+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d~-~~-----~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~ 396 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQDS-PL-----FKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASD 396 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccCC-ch-----HHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHH
Confidence 569999999999999997766543332 21 11122345666666666654433 334689999999999995
Q ss_pred HHHHHHHhCCccEEEEecCCccc
Q 005976 415 CLRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
....++ ++|||||=.|...-..
T Consensus 397 ~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 397 KKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHhHHH-hcCccEEEccCCCCcc
Confidence 445566 9999999999876554
No 88
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=93.38 E-value=0.2 Score=62.76 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCCcchhhhhhhhHHHHHcCCceEEECcccccc
Q 005976 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFN 290 (666)
Q Consensus 258 ~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~ 290 (666)
...|||.++.+-++.+++.|.+.|+|+|++...
T Consensus 740 ~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~ 772 (1221)
T PRK14510 740 WGIGDFEELYALVDFLAEGGQSLWGVNPLHPLG 772 (1221)
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 357999999999999999999999999998753
No 89
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.33 E-value=0.12 Score=53.40 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=42.6
Q ss_pred hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCc-ccCCCCcCCCCCCCCccCCCCCcHHHHHHHH
Q 005976 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYS-TINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~-~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV 343 (666)
...+.++.|+++|+|+|=|.-.++. +. +..-+.++. ...+.|+++|
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~---------------------~~~~~~~~~~~~------------~~~~~ld~~v 68 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA---------------------YQEPNPGYNYDE------------TYLARLDRIV 68 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS---------------------TSTTSTTTSBTH------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH---------------------hcCCCCCccccH------------HHHHHHHHHH
Confidence 4556689999999999998655421 11 000001111 2388999999
Q ss_pred HHHHHcCCEEEEeeccc
Q 005976 344 REAHKRGIEVVMDVVFN 360 (666)
Q Consensus 344 ~~aH~~GI~VIlDvV~N 360 (666)
+.|+++||+||+|+--.
T Consensus 69 ~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 69 DAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHTT-EEEEEEEES
T ss_pred HHHHhCCCeEEEEeccC
Confidence 99999999999987554
No 90
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=93.30 E-value=0.22 Score=60.32 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCCccCCCCCHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~---~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.+.||+.+|++|+++|.=+.+ ++..+. .+..++......+|..+.+|..+ .|.|...-.|+.+|++|++..+.
T Consensus 243 P~~mv~~Lh~~G~kvv~iidP-gI~~d~---gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 243 PKGLADDLHSIGFKAIWMLDP-GIKAEE---GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred HHHHHHHHHHCCCEEEEEEcC-CCccCC---CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 689999999999999775433 222111 11222211223445555555433 22232234699999999999999
Q ss_pred HHHHHHhCCccEEEEecCC
Q 005976 416 LRYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a~ 434 (666)
++.++ +.|||||=+|+-.
T Consensus 319 ~k~l~-d~GVDG~W~DmnE 336 (978)
T PLN02763 319 VKDFV-SNGVDGIWNDMNE 336 (978)
T ss_pred HHHHh-cCCCcEEEccCCC
Confidence 99888 7999999999754
No 91
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.20 E-value=0.3 Score=50.39 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.+++++.++.+|++|+||++=+--+|.+..- ....+++-++.+.+.
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----------------------------------~~~~~~~~~~~fa~~ 95 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----------------------------------ANNLSDAAAKAYAKA 95 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----------------------------------cccCCHHHHHHHHHH
Confidence 6889999999999999999988666543210 011234567777788
Q ss_pred HHHHHHhCCccEEEEec
Q 005976 416 LRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~ 432 (666)
+..+++.||+||+-+|-
T Consensus 96 l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 96 IVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHhCCCceEEee
Confidence 88888899999999994
No 92
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=92.77 E-value=0.61 Score=54.97 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.8
Q ss_pred CCCcchhhhhhhhHHHHHcCCceEEECcccc
Q 005976 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHE 288 (666)
Q Consensus 258 ~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e 288 (666)
...|||..+.+-++.+++.|.+.|+|+|++.
T Consensus 159 ~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 159 WGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred CCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3479999988888999999999999999984
No 93
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.17 E-value=1.3 Score=48.22 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccc-cCCCCccCCCCCHHHHHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN-YSGCGNTFNCNHPVVRQFI 412 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~-~~~~~~dln~~~p~vr~~i 412 (666)
+.+|+|+||+-|.++||+||-.+- +.|+..--...|.+. .......+.. .......||..+|.+.+++
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~----------~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~ 153 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELG----------CTGGPGSVVSVQGVVSNVLCPGKPETYTFL 153 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCcccc----------CCCCCCccccccCcCCCccCCCChhHHHHH
Confidence 589999999999999999999985 788743110011110 0000000111 1112356899999999999
Q ss_pred HHHHHHHHHhCCc
Q 005976 413 VDCLRYWVTEMHV 425 (666)
Q Consensus 413 ~d~l~~W~~e~gI 425 (666)
.+++...+.-+.-
T Consensus 154 ~~ll~E~~~lF~~ 166 (357)
T cd06563 154 EDVLDEVAELFPS 166 (357)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999854543
No 94
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.07 E-value=0.97 Score=49.07 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~ 413 (666)
+.+|+|+||+-|.++||.||-.+- +.|+..-...-|.+...+.+. |. ..........||..+|++.+++.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~--~~-------~~~~~~~~~~L~~~~~~t~~fl~ 138 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAV--WR-------KYCPEPPCGQLNPTNPKTYDFLK 138 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCCCcc--cc-------ccccCCCCccccCCChhHHHHHH
Confidence 389999999999999999999985 788854211111111110000 00 00011123469999999999999
Q ss_pred HHHHHHHHhCCc
Q 005976 414 DCLRYWVTEMHV 425 (666)
Q Consensus 414 d~l~~W~~e~gI 425 (666)
+++...++-+..
T Consensus 139 ~vl~E~~~lF~~ 150 (348)
T cd06562 139 TLFKEVSELFPD 150 (348)
T ss_pred HHHHHHHHhcCC
Confidence 999999965553
No 95
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=91.62 E-value=0.86 Score=53.59 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCcc----ccCCCCccCCCCCHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY----NYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~----~~~~~~~dln~~~p~vr~~i~d 414 (666)
++++|+.+|++|+|+|+=+-++-..... +..++.......+..+..|... .|.+.-.=+|+.+|.+.....+
T Consensus 353 ~~~fv~~Lh~~G~kyvliidP~is~~~~----y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~ 428 (805)
T KOG1065|consen 353 LKDFVDDLHARGFKYVLIIDPFISTNSS----YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD 428 (805)
T ss_pred hHHHHHHHHhCCCeEEEEeCCccccCcc----chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHH
Confidence 9999999999999987755533222111 1112211222333333333331 1222122368899999999999
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 005976 415 CLRYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 415 ~l~~W~~e~gIDGfR~D~a~ 434 (666)
.++..-++.++|||=+|+-.
T Consensus 429 ~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 429 ELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred HHHhhcccCCccceEEECCC
Confidence 99988889999999999743
No 96
>PLN03244 alpha-amylase; Provisional
Probab=91.19 E-value=0.45 Score=55.93 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCCCCCCeEEeCC-cEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecc-cccCCCCCEEEEEEcCC
Q 005976 93 GYPTPFGATLRDG-GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALD-SFANKTGDVWHVFLKGD 158 (666)
Q Consensus 93 g~~~~lGa~~~~~-g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~-~~~~~~~gvW~~~i~~~ 158 (666)
.....||.|...+ ++.|+.|||.|.-++|+ ||||+|.++....-. -+...+-|+|+|.++..
T Consensus 118 ~~~e~~g~~r~~~~~~~~~ewapga~~~~~~----gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~ 181 (872)
T PLN03244 118 SGFEILGMHRHMEHRVDFMDWAPGARYCAII----GDFNGWSPTENAAREGHFGHDDYGYWFIILEDK 181 (872)
T ss_pred hhhhhhccccCcccCceeEeecCCcceeeee----ccccCCCccccccccccccccccceEEEEechh
Confidence 3457899999875 89999999999999999 999999876433210 02234669999999853
No 97
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.04 E-value=0.26 Score=53.46 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=40.4
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
++....+-|.-.+++|++.|+.+= +. ++. + .....++|++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL-~i-pe~-------------------~-------------------~~~~~~~~~~ 51 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL-HI-PED-------------------D-------------------PEDYLERLKE 51 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-------------------------------------------------HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC-Cc-CCC-------------------C-------------------HHHHHHHHHH
Confidence 566666677777889999998752 21 100 0 0012799999
Q ss_pred HHHHHHHcCCEEEEeeccccc
Q 005976 342 LVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~ 362 (666)
|++.||+.||+||+||-+.-.
T Consensus 52 l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 52 LLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp HHHHHHHCT-EEEEEE-CCHH
T ss_pred HHHHHHHCCCEEEEECCHHHH
Confidence 999999999999999976543
No 98
>PLN02950 4-alpha-glucanotransferase
Probab=90.80 E-value=5.3 Score=48.74 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=42.6
Q ss_pred CCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 259 ~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
..|+|.++.+-++.+++.|.+.|+|+|+......... ..+--|.+.+-|+.+|-|=.
T Consensus 278 GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~----------~~SsPYs~~S~falNPlyI~ 334 (909)
T PLN02950 278 GVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMW----------WDSYPYSSLSVFALHPLYLR 334 (909)
T ss_pred CeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCC----------CCCCCcCcccccccChhhcC
Confidence 4799999999999999999999999999875321000 00113888888888888765
No 99
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.50 E-value=1.1 Score=48.96 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=68.5
Q ss_pred hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHH
Q 005976 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV 343 (666)
..+.+.|.-+|++|||+|-|..+.-..-. +.. ..| .-+.|.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lE------P~e-------------------G~y-----------dF~~lD~~l 53 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLE------PEE-------------------GQY-----------DFSWLDRVL 53 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-------SBT-------------------TB--------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcc------CCC-------------------Cee-----------ecHHHHHHH
Confidence 45667799999999999998765321100 000 111 046699999
Q ss_pred HHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhC
Q 005976 344 REAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEM 423 (666)
Q Consensus 344 ~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~ 423 (666)
+.|+++||+|||-+... .. |.+-.+ .++..-..+..|..... +....++..+|.+|+++...++..++.|
T Consensus 54 ~~a~~~Gi~viL~~~~~-~~------P~Wl~~--~~Pe~~~~~~~g~~~~~-g~~~~~~~~~p~yr~~~~~~~~~l~~~y 123 (374)
T PF02449_consen 54 DLAAKHGIKVILGTPTA-AP------PAWLYD--KYPEILPVDADGRRRGF-GSRQHYCPNSPAYREYARRFIRALAERY 123 (374)
T ss_dssp HHHHCTT-EEEEEECTT-TS-------HHHHC--CSGCCC-B-TTTSBEEC-CCSTT-HCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEeccc-cc------ccchhh--hcccccccCCCCCcCcc-CCccccchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999977621 11 111111 11222222233332222 2223567789999999888777766554
Q ss_pred ----CccEEEEec
Q 005976 424 ----HVDGFRFDL 432 (666)
Q Consensus 424 ----gIDGfR~D~ 432 (666)
.|-|+.+|.
T Consensus 124 ~~~p~vi~~~i~N 136 (374)
T PF02449_consen 124 GDHPAVIGWQIDN 136 (374)
T ss_dssp TTTTTEEEEEECC
T ss_pred cccceEEEEEecc
Confidence 477888764
No 100
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=90.26 E-value=1.1 Score=39.84 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCCCeEEeCCcEEEEEEcCC--CCeEEEEEEeCCCCcCCccceeeecccccCC-CCCEEEEEEcCCCCCceEEEEEc
Q 005976 96 TPFGATLRDGGVNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGDFKDMLYGYKFD 169 (666)
Q Consensus 96 ~~lGa~~~~~g~~F~vwap~--a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~-~~gvW~~~i~~~~~~~~Y~y~i~ 169 (666)
.|+|| +.++|||+++. +.+|.|++.++... +. ...++|.+.... ....|++.|+....-..|.|+|.
T Consensus 11 ~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~--~~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 11 YPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDK--GE-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EEcCC----CEEEEEEEecCCCccEEEEEEECCCCC--CC-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 38888 78999999875 57777776654211 11 236788654332 23689999986544456667664
No 101
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=90.18 E-value=0.76 Score=49.52 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 418 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~ 418 (666)
.++||+++|++|++||+-+.+--. .+.. +.+.+.-.|+.+|++|++..+.++.
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i~-~g~~--------------------------~~~~~~~pDftnp~ar~wW~~~~~~ 118 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVIS-YGGG--------------------------LGSPGLYPDLGRPDVREWWGNQYKY 118 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCcee-cCcc--------------------------CCCCceeeCCCCHHHHHHHHHHHHH
Confidence 588999999999999887653211 1000 0011223578899999999888888
Q ss_pred HHHhCCccEEEEecCC
Q 005976 419 WVTEMHVDGFRFDLAS 434 (666)
Q Consensus 419 W~~e~gIDGfR~D~a~ 434 (666)
+. +.|||||=+|+..
T Consensus 119 l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 119 LF-DIGLEFVWQDMTT 133 (332)
T ss_pred HH-hCCCceeecCCCC
Confidence 87 7899999999653
No 102
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=90.00 E-value=0.65 Score=50.60 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHH
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 419 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W 419 (666)
++|+..||++|++|++..-+. .-...++..|+.+++.+..+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~---------------------------------------~~~l~~~~~R~~fi~siv~~ 107 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP---------------------------------------LEQISNPTYRTQWIQQKVEL 107 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC---------------------------------------HHHcCCHHHHHHHHHHHHHH
Confidence 588999999999999741100 00134688899999999999
Q ss_pred HHhCCccEEEEec
Q 005976 420 VTEMHVDGFRFDL 432 (666)
Q Consensus 420 ~~e~gIDGfR~D~ 432 (666)
++++|.||+-+|-
T Consensus 108 ~~~~gfDGIdIDw 120 (358)
T cd02875 108 AKSQFMDGINIDI 120 (358)
T ss_pred HHHhCCCeEEEcc
Confidence 9999999999984
No 103
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.88 E-value=2.5 Score=44.87 Aligned_cols=113 Identities=20% Similarity=0.141 Sum_probs=71.9
Q ss_pred chhhhhhhhHHHHHcCCceEEECcc--ccccccccccccCcCCCCCccccCCcccCCCCc-CCCCCCCCccCCCCCcHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPC--HEFNELEYFSYNSVLGDYKVNFWGYSTINYFSP-MISYSSAGIRNCGHDAINE 338 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi--~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~-d~~ygt~~~~~~~~g~~~e 338 (666)
+...|.+.++.|+.+|+|.++|==- |+.. |+- .... ...| +.+|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~-------------------~~p---~~~~~~~~y-----------T~~e 61 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYE-------------------GEP---EVGRMRGAY-----------TKEE 61 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecC-------------------CCc---ccccCCCCc-----------CHHH
Confidence 3566777889999999999987321 1111 110 0000 1222 3899
Q ss_pred HHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~ 417 (666)
++++++-|.++||+||-.+- +.|+..- +. .+.|-...+. ......||..+|++.++|.+.+.
T Consensus 62 i~ei~~yA~~~gI~vIPeid~pGH~~~~------l~-----~~~~~~l~~~------~~~~~~l~~~~~~t~~fi~~li~ 124 (301)
T cd06565 62 IREIDDYAAELGIEVIPLIQTLGHLEFI------LK-----HPEFRHLREV------DDPPQTLCPGEPKTYDFIEEMIR 124 (301)
T ss_pred HHHHHHHHHHcCCEEEecCCCHHHHHHH------Hh-----Cccccccccc------CCCCCccCCCChhHHHHHHHHHH
Confidence 99999999999999998875 7787431 10 0111111110 11135789999999999999999
Q ss_pred HHHHhCC
Q 005976 418 YWVTEMH 424 (666)
Q Consensus 418 ~W~~e~g 424 (666)
..+.-+.
T Consensus 125 ev~~~f~ 131 (301)
T cd06565 125 QVLELHP 131 (301)
T ss_pred HHHHhCC
Confidence 9996554
No 104
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.87 E-value=1.7 Score=46.60 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~ 413 (666)
+.+|+|+||+-|.++||+||-.+- +.|+..-....|.+.. .. . ........||..+|++.+++.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~-----------~~--~--~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGL-----------KN--P--FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcC-----------CC--c--ccCCCcccccCCCHHHHHHHH
Confidence 489999999999999999999885 7887431110010000 00 0 111223578999999999999
Q ss_pred HHHHHHHHhCC--ccEEEE
Q 005976 414 DCLRYWVTEMH--VDGFRF 430 (666)
Q Consensus 414 d~l~~W~~e~g--IDGfR~ 430 (666)
+++...++-+. -+=|++
T Consensus 145 ~l~~E~~~~f~~~~~~~Hi 163 (326)
T cd06564 145 ALFDEYLDGFNPKSDTVHI 163 (326)
T ss_pred HHHHHHHHhcCCCCCEEEe
Confidence 99999986565 344443
No 105
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=88.99 E-value=0.23 Score=56.55 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH 361 (666)
..+++++.+.|+++||+||.|+.+-=
T Consensus 191 ~~Q~~~~~~~A~~~gI~L~gDlpigv 216 (496)
T PF02446_consen 191 FKQWKAAKEYAREMGIGLIGDLPIGV 216 (496)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESS-
T ss_pred HHHHHHHHHHHHHCCCEEEEeccceE
Confidence 45688899999999999999998643
No 106
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=88.83 E-value=1.4 Score=42.58 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=47.8
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHH
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~L 342 (666)
-+...+.+.++|++|+++|.|+=.-- ...-+.|..+. .+.+- ....+-+..+
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~------------------~~~~~yps~~~--~~~~~--------~~~~d~l~~~ 70 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGY------------------GGFAFYPSKLS--PGGFY--------MPPVDLLEMI 70 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeec------------------CCcccCCcccc--Ccccc--------CCcccHHHHH
Confidence 35667889999999999999871110 00112333331 11121 1336779999
Q ss_pred HHHHHHcCCEEEEeecccc
Q 005976 343 VREAHKRGIEVVMDVVFNH 361 (666)
Q Consensus 343 V~~aH~~GI~VIlDvV~NH 361 (666)
.++|.+.||+|++-+.++.
T Consensus 71 L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 71 LDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHcCCEEEEeCCCCc
Confidence 9999999999999888875
No 107
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=88.75 E-value=3.1 Score=44.83 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~ 413 (666)
+.+|+++||+-|.++||+||-.+- +.|+..--...|.+.-.+.... . +....-....||..+|++.+++.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~-~--------~~~~~~~~~~l~~~~~~t~~fl~ 143 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKP-L--------YTGIEVGFSSLDVDKPTTYEFVD 143 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCc-c--------ccccCCCCcccCCCCHHHHHHHH
Confidence 489999999999999999999986 7887431100011110000000 0 00111112478999999999999
Q ss_pred HHHHHHHHhC
Q 005976 414 DCLRYWVTEM 423 (666)
Q Consensus 414 d~l~~W~~e~ 423 (666)
+++...+.-+
T Consensus 144 ~v~~E~~~~f 153 (329)
T cd06568 144 DVFRELAALT 153 (329)
T ss_pred HHHHHHHHhC
Confidence 9999988543
No 108
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=88.68 E-value=1.7 Score=46.47 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.+++++-|+.||++|++||+-+ +.. .+ .....++.-|+.+++.
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSi-----GG~--~~------------------------------~~~~~~~~~~~~fa~s 101 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISI-----GGA--NG------------------------------HVDLNHTAQEDNFVDS 101 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEE-----eCC--CC------------------------------ccccCCHHHHHHHHHH
Confidence 6789999999999999999865 110 00 0012356778888999
Q ss_pred HHHHHHhCCccEEEEecC
Q 005976 416 LRYWVTEMHVDGFRFDLA 433 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a 433 (666)
+..+++++|+||+-||--
T Consensus 102 l~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 102 IVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred HHHHHHHhCCCeEEEecc
Confidence 999999999999999953
No 109
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=88.60 E-value=2.4 Score=48.10 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCC-CCcccc-----CCCCccCCCCCHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK-GEFYNY-----SGCGNTFNCNHPVVR 409 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~-g~~~~~-----~~~~~dln~~~p~vr 409 (666)
-++++++-+-|+++||.+|.|+.+.-...+.+. ..++.+|..+.. |..... ..|++ -.-+|++-
T Consensus 209 ~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDv--------W~~~~~f~~~~~~GaPPD~f~~~GQ~Wg~--p~yn~~~l 278 (520)
T COG1640 209 FRQLAALKRYANDMGIGIIGDLPVGVAQDSADV--------WANPEYFCLDESAGAPPDVFNAQGQDWGL--PPYNPEAL 278 (520)
T ss_pred HHHHHHHHHHHHhcCceEeecccceecCCchhh--------hcCcccccccccCCCCCCcccccccccCC--CCCCHHHH
Confidence 355666667788899999999987755333210 123445554432 222211 11111 12223321
Q ss_pred -----HHHHHHHHHHHHhCCccEEEEecCCccc
Q 005976 410 -----QFIVDCLRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 410 -----~~i~d~l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
+..++.++.=++ .+|++|+|....+-
T Consensus 279 ~~~~y~wwierlr~~~~--~~~~lRIDHf~Gl~ 309 (520)
T COG1640 279 KKDGYDWWIERLRANLK--LYGILRIDHFRGLF 309 (520)
T ss_pred HHcccHHHHHHHHHHHH--hcCeeeeeeecchh
Confidence 122344444443 67889999877765
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=0.59 Score=49.38 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~ 362 (666)
..-|++|+++||+.||+||+||-+.-.
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPsil 74 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPSIL 74 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHHHH
Confidence 566999999999999999999977543
No 111
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=88.23 E-value=1.1 Score=57.33 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCcchhhhhhhhHHHHHcCCceEEECccc
Q 005976 259 HPGTYLGVVEKLDHLKDLGINCLELMPCH 287 (666)
Q Consensus 259 ~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~ 287 (666)
..|||..+.+-++.+++.|.+.|+|+|++
T Consensus 189 GIGDfgdL~~~~d~la~~Ga~~lqlnPLh 217 (1693)
T PRK14507 189 GIGDFGDLGRLVRDAALRGASFLGLSPLH 217 (1693)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 37999998888999999999999999998
No 112
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=87.96 E-value=2.8 Score=44.59 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~ 413 (666)
+.+|+++||+-|.++||+||-.+- +.|+..--...|.+.-... .+ ..+......||..+|++.+++.
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~----------~~--~~~~~~~~~l~~~~~~t~~fl~ 137 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFPKLLTECY----------AG--LKLRDVFDPLDPTLPKGYDFLD 137 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCHHhccCcc----------cc--CCCCCCCCccCCCCccHHHHHH
Confidence 389999999999999999999985 8888531100010000000 00 0111122478999999999999
Q ss_pred HHHHHHHHhC
Q 005976 414 DCLRYWVTEM 423 (666)
Q Consensus 414 d~l~~W~~e~ 423 (666)
+.+..++.-+
T Consensus 138 ~l~~e~~~lf 147 (303)
T cd02742 138 DLFGEIAELF 147 (303)
T ss_pred HHHHHHHHhC
Confidence 9999999544
No 113
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=87.95 E-value=1.7 Score=46.65 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=54.5
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.+.++.||+.|+|+|=|=--.. |.+ . +....+...+|.+++
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~------------------------P~~-----~----------g~~~~~~~~~~akra 67 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN------------------------PYD-----G----------GYNDLEDVIALAKRA 67 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-------------------------TT-----T----------TTTSHHHHHHHHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccC------------------------Ccc-----c----------ccCCHHHHHHHHHHH
Confidence 4568999999999998743211 111 1 112389999999999
Q ss_pred HHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCcc
Q 005976 347 HKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVD 426 (666)
Q Consensus 347 H~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gID 426 (666)
+++||+|+||+=|..+-.+- +... ....|.+. +++.-...|.++-.++|.... +.||.
T Consensus 68 k~~Gm~vlldfHYSD~WaDP---------g~Q~----------~P~aW~~~--~~~~l~~~v~~yT~~vl~~l~-~~G~~ 125 (332)
T PF07745_consen 68 KAAGMKVLLDFHYSDFWADP---------GKQN----------KPAAWANL--SFDQLAKAVYDYTKDVLQALK-AAGVT 125 (332)
T ss_dssp HHTT-EEEEEE-SSSS--BT---------TB-B------------TTCTSS--SHHHHHHHHHHHHHHHHHHHH-HTT--
T ss_pred HHCCCeEEEeecccCCCCCC---------CCCC----------CCccCCCC--CHHHHHHHHHHHHHHHHHHHH-HCCCC
Confidence 99999999999887663220 0000 00112211 222223567778888887775 66765
No 114
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=87.62 E-value=1.7 Score=44.84 Aligned_cols=63 Identities=22% Similarity=0.435 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
..++..++++||++|++|++=|- ++... .+ .. -..++..|+.+++.
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~----------------~~---------------~~--~~~~~~~r~~fi~~ 90 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP----------------EF---------------TA--ALNDPAKRKALVDK 90 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC----------------cc---------------hh--hhcCHHHHHHHHHH
Confidence 46788999999999999998542 21100 00 00 23467889999999
Q ss_pred HHHHHHhCCccEEEEec
Q 005976 416 LRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~ 432 (666)
+..++++|+.||+-+|-
T Consensus 91 lv~~~~~~~~DGIdiDw 107 (253)
T cd06545 91 IINYVVSYNLDGIDVDL 107 (253)
T ss_pred HHHHHHHhCCCceeEEe
Confidence 99999999999999995
No 115
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=86.29 E-value=1.2 Score=46.37 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 418 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~ 418 (666)
.++||+.+|++|++|++-+.+. ||+...+.++.
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~-----------------------------------------------v~~w~~~~~~~ 100 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPY-----------------------------------------------IREWWAEVVKK 100 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChh-----------------------------------------------HHHHHHHHHHH
Confidence 7899999999999999965432 26666777777
Q ss_pred HHHhCCccEEEEecCCcc
Q 005976 419 WVTEMHVDGFRFDLASIM 436 (666)
Q Consensus 419 W~~e~gIDGfR~D~a~~l 436 (666)
.+.++|||||-+|...-.
T Consensus 101 ~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 101 LLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred hhccCCCCEEeccCCCCC
Confidence 656899999999977544
No 116
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=85.36 E-value=2.8 Score=49.29 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=56.2
Q ss_pred CCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCc-------eEE
Q 005976 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-------LYG 165 (666)
Q Consensus 93 g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~-------~Y~ 165 (666)
.+...+|+ .|++|+|.|+.+++.+|+..+.........+.+.+ -.-++|...+.++.... .|.
T Consensus 62 ~~~~~~G~-------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k---~l~dpya~~l~g~~~~~~~~~~~y~~~ 131 (697)
T COG1523 62 PYDGELGA-------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNK---LLLDPYAKALDGDLKWGTPALFGYYYG 131 (697)
T ss_pred ccCCcccc-------EEEEEcCCCceeeEEEEecCCCcCCccCeeecccc---ccccceeEEeccccccCcccccccccc
Confidence 44456665 99999999999999999975533333344555433 24589999999875333 333
Q ss_pred EEEcCccCCCCCccccCcceecCccceeeeecc
Q 005976 166 YKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRA 198 (666)
Q Consensus 166 y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~ 198 (666)
|.+... ...+...|||+|++....
T Consensus 132 ~~~~~~---------~~~~~~~~~~~Ksvv~~~ 155 (697)
T COG1523 132 YQITNL---------SPDRDSADPYPKSVVIDP 155 (697)
T ss_pred cccccc---------CccccccccCCceEEecc
Confidence 343311 011346788999887665
No 117
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=85.34 E-value=9.6 Score=39.86 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=68.4
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHH-HHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV-REA 346 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV-~~a 346 (666)
..|+.|+++|+|+|+|.+..+..+ ++... -=|-|..+.-+ ..+=|-+.+ +..
T Consensus 21 ~l~~ri~~~~~~tV~Lqaf~d~~g-----------dg~~~-~~YFpnr~lpv---------------raDlf~rvawql~ 73 (294)
T PF14883_consen 21 KLIQRIKDMGINTVYLQAFADPDG-----------DGNAD-AVYFPNRHLPV---------------RADLFNRVAWQLR 73 (294)
T ss_pred HHHHHHHHcCCCEEEEEeeeCCCC-----------CCcee-eEEcCCCCCch---------------HHHHHHHHHHHHh
Confidence 446899999999999999876432 11100 01333222111 144466666 444
Q ss_pred HHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCcc
Q 005976 347 HKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVD 426 (666)
Q Consensus 347 H~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gID 426 (666)
.+.|++|..-+..=-.. +.+......-.... . . ......|..-+|++|+.|.++..-....-.||
T Consensus 74 tr~~v~VyAWMPvlaf~----------lp~~~~~~~~~~~~-~---~-~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fd 138 (294)
T PF14883_consen 74 TRAGVKVYAWMPVLAFD----------LPKVKRADEVRTDR-P---D-PDGYRRLSPFDPEARQIIKEIYEDLARYSKFD 138 (294)
T ss_pred hhhCCEEEEeeehhhcc----------CCCcchhhhccccC-C---C-CCCceecCCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 48899999887642110 00000000000000 0 0 01123566678999999999999998656999
Q ss_pred EEEE
Q 005976 427 GFRF 430 (666)
Q Consensus 427 GfR~ 430 (666)
|+-|
T Consensus 139 GILF 142 (294)
T PF14883_consen 139 GILF 142 (294)
T ss_pred eEEE
Confidence 9999
No 118
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=83.64 E-value=1.7 Score=46.89 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceee--CCCCCccccCCC---CccCCCCCHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYML--APKGEFYNYSGC---GNTFNCNHPVV 408 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~--~~~g~~~~~~~~---~~dln~~~p~v 408 (666)
+.+|+++||+-|+++||+||-.|- +.|+..-.. .+ +.+... .....+...... ...||..+|.+
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~-----~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t 140 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLK-----AY-----PELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPET 140 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHH-----HH-----HHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHHHHHH-----hC-----chhhccccccccccccccccCCCcccCCCCcHHH
Confidence 389999999999999999999985 788753100 00 000000 000001101111 13689999999
Q ss_pred HHHHHHHHHHHHHhCCccEEEE
Q 005976 409 RQFIVDCLRYWVTEMHVDGFRF 430 (666)
Q Consensus 409 r~~i~d~l~~W~~e~gIDGfR~ 430 (666)
.+++.+.+...+.-+.-.-|++
T Consensus 141 ~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 141 YEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHHHhhCCCCeEEe
Confidence 9999999999997677555555
No 119
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.72 E-value=3.3 Score=49.02 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=49.6
Q ss_pred CCCeEEeCCc-EEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEcCccCCC
Q 005976 97 PFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQ 175 (666)
Q Consensus 97 ~lGa~~~~~g-~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~~~~~~~ 175 (666)
-||+|..++| +.+|+|.|.|.+|.|+. .. + . ...+|++. ...|+|.+.+|.. ..|.+++.-.
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~-~~-~----~--~~~~~~~~--~~~g~f~~~~~~~---~~y~~~~~~~---- 91 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLID-GR-G----K--LLARMQAS--PIDGVFEGILPAD---GPYRLRIVWP---- 91 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEe-cC-C----c--cccccEec--CCCCeEEEecCCC---CCEEEEEEeC----
Confidence 4788887888 79999999999999962 11 1 1 11245432 3469999999843 2477776521
Q ss_pred CCccccCcceecCccceee
Q 005976 176 EGHYFDPTKIVLDPYAKAV 194 (666)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~ 194 (666)
.+ ...+.|||+...
T Consensus 92 ~~-----~~~~~dpy~~~~ 105 (730)
T PRK12568 92 DV-----VQEIEDPYAFAP 105 (730)
T ss_pred Cc-----eEEeeccccccc
Confidence 11 235679999653
No 120
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.69 E-value=13 Score=39.61 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCC-CCccCCCCCHHHHHHH
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSG-CGNTFNCNHPVVRQFI 412 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~-~~~dln~~~p~vr~~i 412 (666)
+.+|+|+||+-|.++||+||-.+- +.|+..--. .+ +.+-............+ ..+.||..+|++.+++
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~-----~y-----pel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~ 135 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAV-----AY-----PELASGPGPYVIERGWGVFEPLLDPTNEETYTFL 135 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHHH-----hC-----HHhccCCCccccccccccCCCccCCCChhHHHHH
Confidence 389999999999999999999985 788753110 01 00000000000111111 1246999999999999
Q ss_pred HHHHHHHHHhCC
Q 005976 413 VDCLRYWVTEMH 424 (666)
Q Consensus 413 ~d~l~~W~~e~g 424 (666)
.+++..++.-|.
T Consensus 136 ~~l~~E~~~lF~ 147 (311)
T cd06570 136 DNLFGEMAELFP 147 (311)
T ss_pred HHHHHHHHHhCC
Confidence 999999985443
No 121
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=80.65 E-value=5.5 Score=36.05 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=44.3
Q ss_pred eCCcEEEEEEcC--CCCeEEEEEEeCCCCcCCccceeeecccccC-CCCCEEEEEEcCCCCCceEEEEEcC
Q 005976 103 RDGGVNFSIFSS--NAVSATLCLITLSDLQENKVTEEIALDSFAN-KTGDVWHVFLKGDFKDMLYGYKFDG 170 (666)
Q Consensus 103 ~~~g~~F~vwap--~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~-~~~gvW~~~i~~~~~~~~Y~y~i~~ 170 (666)
.++.+++|+++. ++.+|.|+--++.+.........++|.+... ..-+.|++.|+.......|.|+|.+
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED 89 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe
Confidence 567788999885 6778887655543321122335677876533 2348999999877667899999874
No 122
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=80.43 E-value=1.9 Score=46.21 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHH
Q 005976 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV 343 (666)
.-..+.|.-+|++|+|+|..-=.+...+.. . ...|| ....+|..|+
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-------~----------g~~df-----------------~g~~dl~~f~ 69 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-------E----------GQFDF-----------------TGNRDLDRFL 69 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-------T----------TB--------------------SGGG-HHHHH
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-------C----------Ccccc-----------------cchhhHHHHH
Confidence 345678899999999999976544432210 0 01111 1157899999
Q ss_pred HHHHHcCCEEEEeecc
Q 005976 344 REAHKRGIEVVMDVVF 359 (666)
Q Consensus 344 ~~aH~~GI~VIlDvV~ 359 (666)
+.|+++||.||+-.=+
T Consensus 70 ~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 70 DLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHTT-EEEEEEES
T ss_pred HHHHHcCcEEEecccc
Confidence 9999999999998544
No 123
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=77.80 E-value=13 Score=38.95 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=40.4
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCC-cccCCCCcCCCCCCCCccCCCCCcHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY-STINYFSPMISYSSAGIRNCGHDAINE 338 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY-~~~dy~~~d~~ygt~~~~~~~~g~~~e 338 (666)
+-+++...+-+|+.+++|+..|.+ +.... .|+. ...|+..+.+ ..+
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv------D~GW~-------------~~~~~~~~d~~~~~~--------------~~d 74 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV------DAGWY-------------GWEKDDDFDFTKPIP--------------DFD 74 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE------BTTCC-------------GS--TTT--TT-B-T--------------T--
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe------ccccc-------------cccccccccccccCC--------------ccC
Confidence 557888888899999999999998 11100 0111 2233333332 478
Q ss_pred HHHHHHHHHHcCCEEEEee
Q 005976 339 FKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDv 357 (666)
+++||+-|+++|++|+|-+
T Consensus 75 l~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 75 LPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999854
No 124
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=77.29 E-value=5.2 Score=42.26 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=40.7
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCC---cc--cCCCCcCCCCCCCCccCCCCCcHH
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---ST--INYFSPMISYSSAGIRNCGHDAIN 337 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY---~~--~dy~~~d~~ygt~~~~~~~~g~~~ 337 (666)
...+..-|+.+|+-|||+|+++-+.+....... ..+...++ ++ .|+..+++.| -+
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~--------n~~~~~~~~~~~~~~~d~~~~N~~Y------------F~ 88 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP--------NRYGFAPFPDEDPGQFDFTRPNPAY------------FD 88 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSSS-B------------TTS-BS-SSTT------TT----H------------HH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCccccccc--------ccCCCcCCCCCCccccCCCCCCHHH------------HH
Confidence 344555589999999999999876654321100 00011111 11 4777888887 78
Q ss_pred HHHHHHHHHHHcCCEEEEeecccc
Q 005976 338 EFKLLVREAHKRGIEVVMDVVFNH 361 (666)
Q Consensus 338 efk~LV~~aH~~GI~VIlDvV~NH 361 (666)
-+..+|+.|.++||.+- +|+=|
T Consensus 89 ~~d~~i~~a~~~Gi~~~--lv~~w 110 (289)
T PF13204_consen 89 HLDRRIEKANELGIEAA--LVPFW 110 (289)
T ss_dssp HHHHHHHHHHHTT-EEE--EESS-
T ss_pred HHHHHHHHHHHCCCeEE--EEEEE
Confidence 89999999999999884 56555
No 125
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=75.44 E-value=5.9 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 005976 336 INEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv 357 (666)
.++..++|+.++++|++|+-.+
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHHHHhCCCeEeccc
Confidence 7899999999999999999654
No 126
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=75.07 E-value=5.2 Score=44.37 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=39.3
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC-cCCCCCCCCccCCCCCcHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS-PMISYSSAGIRNCGHDAINEFKLLVRE 345 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~-~d~~ygt~~~~~~~~g~~~efk~LV~~ 345 (666)
.+-+.++|+.|+|+|-+.=.++ ....+. .+|.+-. .....-+.+.|+.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~------------------------~~~~~~~~~p~~~~-------~~~~~~ld~~I~~ 124 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYW------------------------ALQATDGDNPYLIG-------LTQLKILDEAINW 124 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchh------------------------hhhccCCCCCCeec-------chHHHHHHHHHHH
Confidence 5668999999999999743322 210000 3333321 1123367888999
Q ss_pred HHHcCCEEEEee
Q 005976 346 AHKRGIEVVMDV 357 (666)
Q Consensus 346 aH~~GI~VIlDv 357 (666)
|.+.||+|++|+
T Consensus 125 a~~~gi~V~iD~ 136 (407)
T COG2730 125 AKKLGIYVLIDL 136 (407)
T ss_pred HHhcCeeEEEEe
Confidence 999999999996
No 127
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=72.97 E-value=5.4 Score=42.38 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHH
Q 005976 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 418 (666)
Q Consensus 339 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~ 418 (666)
..++++.+|++|++|++=|- +... +. . +.. .+ .--..++..|+.+++.+..
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~~-~---------~~~-~~----------------~~~l~~~~~r~~fi~~iv~ 97 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-GN-F---------DSE-LA----------------HAVLSNPEARQRLINNILA 97 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-CC-C---------CHH-HH----------------HHHhcCHHHHHHHHHHHHH
Confidence 35899999999999997552 2211 00 0 000 00 0113457889999999999
Q ss_pred HHHhCCccEEEEecC
Q 005976 419 WVTEMHVDGFRFDLA 433 (666)
Q Consensus 419 W~~e~gIDGfR~D~a 433 (666)
+++++|.||+-+|--
T Consensus 98 ~l~~~~~DGidiDwE 112 (313)
T cd02874 98 LAKKYGYDGVNIDFE 112 (313)
T ss_pred HHHHhCCCcEEEecc
Confidence 999999999999953
No 128
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=72.80 E-value=6.9 Score=40.17 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=38.9
Q ss_pred Ccchhhhh-------hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCC
Q 005976 260 PGTYLGVV-------EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCG 332 (666)
Q Consensus 260 ~G~~~gi~-------~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~ 332 (666)
+||+-.+. +-|.++|+|||++|+++==+ -. +
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGt------------------------i~-----l------------- 110 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGT------------------------ID-----L------------- 110 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SS------------------------S--------------------
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCc------------------------ee-----C-------------
Confidence 68877664 23788999999999987311 11 1
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEeec
Q 005976 333 HDAINEFKLLVREAHKRGIEVVMDVV 358 (666)
Q Consensus 333 ~g~~~efk~LV~~aH~~GI~VIlDvV 358 (666)
+.++..++|+.++++|++|+-.|=
T Consensus 111 --~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 111 --PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred --CHHHHHHHHHHHHHCCCEEeeccc
Confidence 178899999999999999998764
No 129
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=71.12 E-value=25 Score=35.33 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=51.2
Q ss_pred eEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC
Q 005976 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (666)
Q Consensus 239 ~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~ 318 (666)
..|--+.+.+|++ +-..+.+-.+.|+++|+..|.|+|.+......+..-+ .-|.-.+.-.
T Consensus 130 v~iR~~vIPg~nd----------~~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg----------~~y~~~~~~~ 189 (213)
T PRK10076 130 VIPRLPLIPGFTL----------SRENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLG----------KTWSMKEVPA 189 (213)
T ss_pred EEEEEEEECCCCC----------CHHHHHHHHHHHHHcCCceEEEecCCccchhHHHHcC----------CcCccCCCCC
Confidence 4455556666654 2344555557888899999999999886543221100 0122222111
Q ss_pred cCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 005976 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 319 ~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIl 355 (666)
.+.++++++.+.+.++|+.|++
T Consensus 190 ---------------~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 190 ---------------PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred ---------------cCHHHHHHHHHHHHHcCCeEEe
Confidence 1378999999999999999974
No 130
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.70 E-value=16 Score=41.12 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=77.0
Q ss_pred chhhhhhhhHHHHHcCCceEEECc----cccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCcc---CCCCC
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMP----CHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIR---NCGHD 334 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~P----i~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~---~~~~g 334 (666)
+...|.+.|+.+....+|.++|== -|......+ +.....+ .+.++...+...+.+.+|+.+.. ..+.=
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~-P~Lt~~g----a~r~~~~~~~~~~~~~~~~~~~~~~~~~g~Y 94 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGL-PELTEVG----AKRCHDLSETTCLLPQLGSGPDTNNSGSGYY 94 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCC-chhhhcc----cccccccccccccccccccCcccCcccCCcc
Confidence 466677778888888888887631 010000000 0000000 01122222223333444432210 01122
Q ss_pred cHHHHHHHHHHHHHcCCEEEEeec-cccccCCCCC----CCccccCCCCC--ccceeeCCC--CCccccCCC-CccCCCC
Q 005976 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDK----GPILSFRGVDN--SVYYMLAPK--GEFYNYSGC-GNTFNCN 404 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~----~~~~~~~~~~~--~~~y~~~~~--g~~~~~~~~-~~dln~~ 404 (666)
+.+|+|+||+-|+++||+||-.+- +.|+..--.. .|.+.-.+... ..|-..++. ..+....+. ...||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 589999999999999999999985 7887531000 00000001000 001101110 111111111 2468999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005976 405 HPVVRQFIVDCLRYWVT 421 (666)
Q Consensus 405 ~p~vr~~i~d~l~~W~~ 421 (666)
+|.+.+++.+++...+.
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999999884
No 131
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=69.61 E-value=5 Score=45.68 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=41.5
Q ss_pred Ccchh-hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 260 PGTYL-GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 260 ~G~~~-gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
.|||. ++.+-++.+++.|++.|+|+|++..... .--|++.+-|+.+|-|=+
T Consensus 22 iGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~---------------~SPY~~~S~~alnplyI~ 73 (497)
T PRK14508 22 IGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYG---------------DSPYQSFSAFAGNPLLID 73 (497)
T ss_pred CcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---------------CCCcCcccccccChhhcC
Confidence 69995 9999999999999999999999985311 113888888888887765
No 132
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=68.64 E-value=39 Score=36.58 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=63.4
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
+-+.-+|++|...|-|+--+-- +.. -|-=...+|.+.+..++ .+=+++|+++|+
T Consensus 95 qW~~~ak~aGakY~VlTakHHD-GF~--------------LW~S~~t~~~v~~~~~k-----------rDiv~El~~A~r 148 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHD-GFC--------------LWPSKYTDYNVVNSGPK-----------RDIVGELADACR 148 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT---B--------------SS--TT-SSBGGGGGGT-----------S-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeehhhcC-ccc--------------cCCCCCCcccccCCCCC-----------CCHHHHHHHHHH
Confidence 3468889999999998765431 111 12112223333332222 477999999999
Q ss_pred HcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCC-CHHHHHHHHHHHHHHHHhCCcc
Q 005976 348 KRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCN-HPVVRQFIVDCLRYWVTEMHVD 426 (666)
Q Consensus 348 ~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~-~p~vr~~i~d~l~~W~~e~gID 426 (666)
++||++.+ .+.+. +-+. +. +- ....+. ... ..+..-. ...+.+++.+.++.+++.|.+|
T Consensus 149 k~Glk~G~--Y~S~~-dw~~--~~----------~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d 208 (346)
T PF01120_consen 149 KYGLKFGL--YYSPW-DWHH--PD----------YP-PDEEGD---ENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPD 208 (346)
T ss_dssp HTT-EEEE--EEESS-SCCC--TT----------TT-SSCHCH---HCC---HCCHHHHHHHHHHHHHHHHHHHHCSTES
T ss_pred HcCCeEEE--Eecch-HhcC--cc----------cC-CCccCC---ccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcc
Confidence 99999998 33222 2110 00 00 000000 000 0000000 1225558888999999999999
Q ss_pred EEEEecCCc
Q 005976 427 GFRFDLASI 435 (666)
Q Consensus 427 GfR~D~a~~ 435 (666)
.+=||....
T Consensus 209 ~lWfDg~~~ 217 (346)
T PF01120_consen 209 ILWFDGGWP 217 (346)
T ss_dssp EEEEESTTS
T ss_pred eEEecCCCC
Confidence 999997643
No 133
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=68.06 E-value=15 Score=38.56 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=38.5
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
+.|.-||+-|||.|-|= |+..+. +. =...||. +....+-.-++.++|+
T Consensus 67 D~~~iLK~~GvNyvRlR-vwndP~--------------------ds-----ngn~ygg------GnnD~~k~ieiakRAk 114 (403)
T COG3867 67 DALQILKNHGVNYVRLR-VWNDPY--------------------DS-----NGNGYGG------GNNDLKKAIEIAKRAK 114 (403)
T ss_pred HHHHHHHHcCcCeEEEE-EecCCc--------------------cC-----CCCccCC------CcchHHHHHHHHHHHH
Confidence 45799999999998764 222111 00 0122333 2222444556777888
Q ss_pred HcCCEEEEeecccc
Q 005976 348 KRGIEVVMDVVFNH 361 (666)
Q Consensus 348 ~~GI~VIlDvV~NH 361 (666)
++||+|++|+-+.-
T Consensus 115 ~~GmKVl~dFHYSD 128 (403)
T COG3867 115 NLGMKVLLDFHYSD 128 (403)
T ss_pred hcCcEEEeeccchh
Confidence 99999999997654
No 134
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=65.18 E-value=10 Score=42.94 Aligned_cols=142 Identities=13% Similarity=0.034 Sum_probs=91.8
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
|-..|.+.++-+|+.||--..|==-+. ...+ .--=+-.|++.....|.+ .+..
T Consensus 307 t~e~ile~vk~akk~gvE~FvlDDGwf------g~rn---------dd~~slGDWlv~seKfPs------------giE~ 359 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVLDDGWF------GGRN---------DDLKSLGDWLVNSEKFPS------------GIEE 359 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEEccccc------cccC---------cchhhhhceecchhhccc------------cHHH
Confidence 456677888999999965544321111 0000 000234467777777743 4788
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHH
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVT 421 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~ 421 (666)
||++.|++|+.-=+-+-+--++.++..+ ..+++|.... +|........+--++..+|.|..++.+.+...+.
T Consensus 360 li~~I~e~Gl~fGIWlePemvs~dSdlf-------rqHPDWvvk~-~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~ 431 (687)
T COG3345 360 LIEAIAENGLIFGIWLEPEMVSEDSDLF-------RQHPDWVVKV-NGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLL 431 (687)
T ss_pred HHHHHHHcCCccceeecchhcccchHHH-------hhCCCeEEec-CCccccccccchhhhccChHHHHHhhhHHHHHHH
Confidence 9999999999998888887777766543 3678888763 3443333333445788888888888876665555
Q ss_pred hCCccEEEEecCCcccc
Q 005976 422 EMHVDGFRFDLASIMTR 438 (666)
Q Consensus 422 e~gIDGfR~D~a~~l~~ 438 (666)
.--||=+|.|.-..+.+
T Consensus 432 ~~~v~ylkwdmnr~l~k 448 (687)
T COG3345 432 FHLVSYLKWDMNRELFK 448 (687)
T ss_pred hhhHHHHHHHhCcceee
Confidence 66777777776666654
No 135
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=64.77 E-value=14 Score=36.46 Aligned_cols=44 Identities=20% Similarity=0.439 Sum_probs=29.8
Q ss_pred hhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHH
Q 005976 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVRE 345 (666)
Q Consensus 266 i~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~ 345 (666)
+...+..|+++|++.|-++|+-- +...+||+.+.++
T Consensus 137 vetAiaml~dmG~~SiKffPm~G--------------------------------------------l~~leE~~avAkA 172 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGG--------------------------------------------LKHLEELKAVAKA 172 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TT--------------------------------------------TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeeeEeecCC--------------------------------------------cccHHHHHHHHHH
Confidence 34568999999999999999631 2338899999999
Q ss_pred HHHcCCEE
Q 005976 346 AHKRGIEV 353 (666)
Q Consensus 346 aH~~GI~V 353 (666)
|-++||.+
T Consensus 173 ~a~~g~~l 180 (218)
T PF07071_consen 173 CARNGFTL 180 (218)
T ss_dssp HHHCT-EE
T ss_pred HHHcCcee
Confidence 99998775
No 136
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=64.51 E-value=25 Score=34.51 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a 433 (666)
.++..|+.+++.+..+++++++||+-+|.-
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E 113 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWE 113 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeee
Confidence 456778888898899999999999999953
No 137
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=62.81 E-value=42 Score=35.29 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=77.1
Q ss_pred hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHH
Q 005976 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV 343 (666)
+.+.+++..||+-|+|++-+=-==+. +.--|...|-+ ....++ ....-|.+.+|
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~Kdd~-----------------G~lty~s~d~~--~~~~~s-------v~~f~Di~~~i 130 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDVKDDY-----------------GELTYPSSDEI--NKYTKS-------VNKFKDIEPVI 130 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEecCCC-----------------ccEeccccchh--hhhhhc-------cccccccHHHH
Confidence 34566779999999999864211111 11234444422 111111 01146788999
Q ss_pred HHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccc-----cCCCCccCCCCCHHHHHHHHHHHHH
Q 005976 344 REAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN-----YSGCGNTFNCNHPVVRQFIVDCLRY 418 (666)
Q Consensus 344 ~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~-----~~~~~~dln~~~p~vr~~i~d~l~~ 418 (666)
+.|+++||-+|.-+|.=--.. ++.+.+.....|-...|.-.+.+ .+...-=++--++.+++|=+.+.+.
T Consensus 131 KkaKe~giY~IARiVvFKD~~------l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKE 204 (400)
T COG1306 131 KKAKENGIYAIARIVVFKDTI------LAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKE 204 (400)
T ss_pred HHHHhcCeEEEEEEEEeeeee------EEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHH
Confidence 999999999999988532110 11111111111100000000111 0000001344568899999999999
Q ss_pred HHHhCCccEEEEecCCccc
Q 005976 419 WVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 419 W~~e~gIDGfR~D~a~~l~ 437 (666)
-. ++|+|-+.||-+..-.
T Consensus 205 a~-~fGfdEiQFDYIRFP~ 222 (400)
T COG1306 205 AA-KFGFDEIQFDYIRFPA 222 (400)
T ss_pred HH-HcCccceeeeEEEccC
Confidence 88 8999999999876544
No 138
>PRK15452 putative protease; Provisional
Probab=62.44 E-value=48 Score=37.25 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 005976 336 INEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIl 355 (666)
.++|++.|+.||++|++|.+
T Consensus 45 ~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 45 HENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 68899999999999999977
No 139
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=61.93 E-value=9.3 Score=40.48 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=31.3
Q ss_pred hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHH
Q 005976 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~ 344 (666)
.....+++||+||+|+|-+--| ||.- .-+++..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~v---------------------------------dp~~-----------nHd~CM~--- 86 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYSV---------------------------------DPSK-----------NHDECMS--- 86 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES------------------------------------TTS-------------HHHHH---
T ss_pred HHHHhHHHHHHcCCCEEEEEEe---------------------------------CCCC-----------CHHHHHH---
Confidence 3445689999999999986433 2211 1344444
Q ss_pred HHHHcCCEEEEeeccccccC
Q 005976 345 EAHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 345 ~aH~~GI~VIlDvV~NH~~~ 364 (666)
++.+.||-||+|+--.+.+.
T Consensus 87 ~~~~aGIYvi~Dl~~p~~sI 106 (314)
T PF03198_consen 87 AFADAGIYVILDLNTPNGSI 106 (314)
T ss_dssp HHHHTT-EEEEES-BTTBS-
T ss_pred HHHhCCCEEEEecCCCCccc
Confidence 45668999999998776554
No 140
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=59.54 E-value=32 Score=43.67 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCce
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVK 483 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 483 (666)
.+|.++++|.+..+.-.+ -++|||+|..+.-|..- ...+++..++ +.|+.+
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhV-------------------------aeylLd~AR~--vnPnLy 537 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHV-------------------------AEYLLDAARK--YNPNLY 537 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHH-------------------------HHHHHHHHhh--cCCCeE
Confidence 669999999998887775 67999999887665210 1125565555 789999
Q ss_pred EEEeeccCC
Q 005976 484 LIAEAWDTG 492 (666)
Q Consensus 484 liaE~w~~~ 492 (666)
++||-+.++
T Consensus 538 V~AELFTGS 546 (1464)
T TIGR01531 538 VVAELFTGS 546 (1464)
T ss_pred EEeeecCCc
Confidence 999987655
No 141
>TIGR03356 BGL beta-galactosidase.
Probab=58.52 E-value=18 Score=40.49 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=46.1
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
..-|.-..+.|+.||+||+|++=++=-+..- .|...-.++ ....+-+
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri---------------------~p~g~~~~n------------~~~~~~y 96 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRI---------------------FPEGTGPVN------------PKGLDFY 96 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhc---------------------ccCCCCCcC------------HHHHHHH
Confidence 3457778899999999999999875433311 110000111 1237889
Q ss_pred HHHHHHHHHcCCEEEEeec
Q 005976 340 KLLVREAHKRGIEVVMDVV 358 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV 358 (666)
+++|++|+++||++|+++.
T Consensus 97 ~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 97 DRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHHcCCeeEEeec
Confidence 9999999999999999986
No 142
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=57.51 E-value=40 Score=36.89 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=43.9
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|+.|+++||+.|.|. +..+..... -.+.. ..+.++..+.++.+
T Consensus 108 ~e~l~~l~~~G~~rvslG-vQS~~~~~L----------------------~~l~R-----------~~s~~~~~~a~~~l 153 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLG-MQSAAPHVL----------------------AVLDR-----------THTPGRAVAAAREA 153 (375)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCCHHHH----------------------HHcCC-----------CCCHHHHHHHHHHH
Confidence 367899999999999874 333321100 01111 12378899999999
Q ss_pred HHcCCE-EEEeecccccc
Q 005976 347 HKRGIE-VVMDVVFNHTV 363 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~ 363 (666)
++.|+. |.+|++++.-+
T Consensus 154 ~~~g~~~v~~dli~GlPg 171 (375)
T PRK05628 154 RAAGFEHVNLDLIYGTPG 171 (375)
T ss_pred HHcCCCcEEEEEeccCCC
Confidence 999999 99999998743
No 143
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=57.40 E-value=42 Score=38.50 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.8
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|+.|+++|+|.|+|-. ..+...- .-.++.. -+.++..+.++.+
T Consensus 206 ~e~L~~L~~~G~~rVslGV-QS~~d~V----------------------L~~inRg-----------ht~~~v~~Ai~~l 251 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGV-QTIYNDI----------------------LERTKRG-----------HTVRDVVEATRLL 251 (522)
T ss_pred HHHHHHHHHcCCCEEEEEC-ccCCHHH----------------------HHHhCCC-----------CCHHHHHHHHHHH
Confidence 4789999999999999864 2221100 0111111 1378999999999
Q ss_pred HHcCCEEEEeeccccc
Q 005976 347 HKRGIEVVMDVVFNHT 362 (666)
Q Consensus 347 H~~GI~VIlDvV~NH~ 362 (666)
++.|++|.+|+.++--
T Consensus 252 r~~G~~v~~~LM~GLP 267 (522)
T TIGR01211 252 RDAGLKVVYHIMPGLP 267 (522)
T ss_pred HHcCCeEEEEeecCCC
Confidence 9999999999998753
No 144
>PLN03059 beta-galactosidase; Provisional
Probab=56.75 E-value=20 Score=43.09 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=43.6
Q ss_pred hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHH
Q 005976 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~ 344 (666)
-..++|.-+|++|+|+|..=-.+...+.. .+ ..| | ....||.++++
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-------~G----------~~d-------F----------~G~~DL~~Fl~ 105 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-------PG----------NYY-------F----------EDRYDLVKFIK 105 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCC-------CC----------eee-------c----------cchHHHHHHHH
Confidence 34677889999999999965444432210 00 011 1 12789999999
Q ss_pred HHHHcCCEEEEeecccccc
Q 005976 345 EAHKRGIEVVMDVVFNHTV 363 (666)
Q Consensus 345 ~aH~~GI~VIlDvV~NH~~ 363 (666)
.|++.||.||+-.=+=-++
T Consensus 106 la~e~GLyvilRpGPYIcA 124 (840)
T PLN03059 106 VVQAAGLYVHLRIGPYICA 124 (840)
T ss_pred HHHHcCCEEEecCCcceee
Confidence 9999999999975443333
No 145
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=56.19 E-value=58 Score=33.67 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEec
Q 005976 405 HPVVRQFIVDCLRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 405 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 432 (666)
++.-|+.+++.+..++++|++||+-||-
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDw 120 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDV 120 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 4556666778888889999999999984
No 146
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=55.42 E-value=14 Score=42.21 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=31.2
Q ss_pred CCcch-hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 259 HPGTY-LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 259 ~~G~~-~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
..||| ..+.+-++.+++.|+..++|.|+...... +++-|.+.+-|+.+|-|-+
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~--------------~~sPY~p~S~~alNPlyI~ 66 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPG--------------NSSPYSPSSRFALNPLYID 66 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TT--------------CTTTTSBS-SSS--GGGS-
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCC--------------CCCCCCCCCCCcCChHHcC
Confidence 47999 88999999999999999999999875421 1245999999999988754
No 147
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=54.48 E-value=16 Score=32.86 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=16.5
Q ss_pred hhhhhhhHHHHHcCCceEEECc
Q 005976 264 LGVVEKLDHLKDLGINCLELMP 285 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~P 285 (666)
..+.+-++.+.++|+.+|||.|
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHHcCCCEEEEEc
Confidence 4456678999999999999987
No 148
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=53.99 E-value=51 Score=35.84 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=43.1
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++||+.|.|.. ..+.. .-.-.+ .+- .+.++..+.|+.+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-qS~~~----------------------~~l~~l-gR~----------~~~~~~~~ai~~l 145 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-QSFRD----------------------DKLLFL-GRQ----------HSAKNIAPAIETA 145 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCCh----------------------HHHHHh-CCC----------CCHHHHHHHHHHH
Confidence 4779999999999998753 22211 000111 121 2378899999999
Q ss_pred HHcCCE-EEEeecccccc
Q 005976 347 HKRGIE-VVMDVVFNHTV 363 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~ 363 (666)
++.|+. |-+|+.++..+
T Consensus 146 ~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 146 LKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHcCCCeEEEeccCCCCC
Confidence 999996 78999997643
No 149
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=53.90 E-value=38 Score=35.62 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCEEEEe
Q 005976 337 NEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 337 ~efk~LV~~aH~~GI~VIlD 356 (666)
.+|.+-|+.|+++|+||||-
T Consensus 59 ~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEE
Confidence 57999999999999999993
No 150
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=53.07 E-value=22 Score=42.34 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 259 ~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
..|||..+.+-++.+++.|.+.|+|+|+....... . ..++--|.+.+-|+.+|-|-.
T Consensus 78 GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~---------~-~~dSSPYsp~S~fAlNPlyId 134 (745)
T PLN03236 78 GAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHG---------T-FWDSYPYSSLSVHALHPLYLK 134 (745)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCC---------C-CCCCCCcCcccccccChHHcC
Confidence 47999998888999999999999999998853110 0 000113888888888887765
No 151
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=52.71 E-value=58 Score=37.11 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=43.5
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|++.||+.|.|.|= .+.. .-.-.+ .+- .+.+++.+.++.|
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQ-S~~d----------------------~vLk~i-gR~----------ht~e~v~~ai~~a 314 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQ-TMND----------------------ETLKAI-GRH----------HTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCC-cCCH----------------------HHHHHh-CCC----------CCHHHHHHHHHHH
Confidence 46789999999999997762 2111 000011 111 2389999999999
Q ss_pred HHcCC-EEEEeeccccc
Q 005976 347 HKRGI-EVVMDVVFNHT 362 (666)
Q Consensus 347 H~~GI-~VIlDvV~NH~ 362 (666)
++.|+ .|-+|+.+..-
T Consensus 315 r~~Gf~~In~DLI~GLP 331 (488)
T PRK08207 315 REMGFDNINMDLIIGLP 331 (488)
T ss_pred HhCCCCeEEEEEEeCCC
Confidence 99999 78899999754
No 152
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=52.52 E-value=1.2e+02 Score=33.44 Aligned_cols=115 Identities=22% Similarity=0.202 Sum_probs=67.3
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
+-++.+|+.|...|-|+--+-- +.. -|-=...+|.+.+..+. .+=+++|+++|+
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHHD-GF~--------------lw~S~~t~~n~~~~~pk-----------rDiv~el~~A~r 138 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHHD-GFC--------------LWDSKYSNWNAVDTGPK-----------RDLVGELADAVR 138 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeecC-Ccc--------------ccCCCCCCCcccCCCCC-----------cchHHHHHHHHH
Confidence 4468899999999987754321 110 12112224444443221 477999999999
Q ss_pred HcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHH---HHHHHHHHHhCC
Q 005976 348 KRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI---VDCLRYWVTEMH 424 (666)
Q Consensus 348 ~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i---~d~l~~W~~e~g 424 (666)
++||++-+ . |...+ |. ++.|-.. ... .......+...+|+ ..-|+..++.||
T Consensus 139 k~Glk~G~--Y--~S~~D--W~---------~p~y~~~------~~~----~~~~~~~~~~~~y~~~~~~Ql~ELit~Yg 193 (384)
T smart00812 139 KRGLKFGL--Y--HSLFD--WF---------NPLYAGP------TSS----DEDPDNWPRFQEFVDDWLPQLRELVTRYK 193 (384)
T ss_pred HcCCeEEE--E--cCHHH--hC---------CCccccc------ccc----ccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 99999988 2 22111 10 1111100 000 00112334556777 888899999999
Q ss_pred ccEEEEecC
Q 005976 425 VDGFRFDLA 433 (666)
Q Consensus 425 IDGfR~D~a 433 (666)
-|.+=||..
T Consensus 194 pd~lWfD~~ 202 (384)
T smart00812 194 PDLLWFDGG 202 (384)
T ss_pred CceEEEeCC
Confidence 999999965
No 153
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=52.17 E-value=13 Score=40.29 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHH
Q 005976 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 420 (666)
Q Consensus 341 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~ 420 (666)
..+++||++|++|+-=+.+...+ +. .+.. .|=..++..+..+++.|...+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~-~~--------------~~~~---------------~lL~~~~~~~~~~a~kLv~la 99 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG-QV--------------EWLE---------------DFLKKDEDGSFPVADKLVEVA 99 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC-ch--------------HHHH---------------HHhccCcccchHHHHHHHHHH
Confidence 56789999999999866544321 00 0000 000011334556667777777
Q ss_pred HhCCccEEEEecCC
Q 005976 421 TEMHVDGFRFDLAS 434 (666)
Q Consensus 421 ~e~gIDGfR~D~a~ 434 (666)
+.||+||+=+|.=.
T Consensus 100 k~yGfDGw~iN~E~ 113 (339)
T cd06547 100 KYYGFDGWLINIET 113 (339)
T ss_pred HHhCCCceEeeeec
Confidence 88999999998543
No 154
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=51.92 E-value=1e+02 Score=34.77 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeec-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d 414 (666)
.+|.+++|+=|.-+||+||..+- +.|++. |++- .+. |...+...+..-..|++ +|..++...++|.+
T Consensus 249 ~eDv~evV~yarlRGIRVlpEfD~PgHt~s---Wg~g-------~~~-fl~p~~~~~~~~~~~gp-lnP~~n~tydvls~ 316 (542)
T KOG2499|consen 249 REDVSEVVEYARLRGIRVLPEFDTPGHTGS---WGPG-------YPD-FLTPCWSSFEVQPPFGP-LNPTNNHTYDVLSE 316 (542)
T ss_pred HHHHHHHHHHHHhccceeeecccCCccccc---ccCC-------CCc-ccCCcccccccCCCCcC-CCCCchhHHHHHHH
Confidence 79999999999999999999985 889865 4421 111 11101000100111333 77777777777777
Q ss_pred HHHHHHHhC
Q 005976 415 CLRYWVTEM 423 (666)
Q Consensus 415 ~l~~W~~e~ 423 (666)
.+..-.+.+
T Consensus 317 i~~dv~evF 325 (542)
T KOG2499|consen 317 IFEDVSEVF 325 (542)
T ss_pred HHHHHHHhC
Confidence 766665433
No 155
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=51.80 E-value=38 Score=36.20 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=32.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccc
Q 005976 399 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 399 ~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
..+++.+|+.|++|.+.+...+ +.|+|||=+|.+....
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~ 173 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFE 173 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhh
Confidence 3578899999999999888776 8999999999887654
No 156
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.56 E-value=1.4e+02 Score=30.70 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=36.7
Q ss_pred hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHH
Q 005976 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~ 344 (666)
.+.+.++.++++|++.|+|.+... .. ...+.++ +.++++++.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~-~~------------------~~~~~~~------------------~~~~~~~l~~ 59 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDES-DE------------------RLARLDW------------------SKEERLSLVK 59 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCc-cc------------------ccccccC------------------CHHHHHHHHH
Confidence 457789999999999999964210 00 0000010 1567899999
Q ss_pred HHHHcCCEEEE
Q 005976 345 EAHKRGIEVVM 355 (666)
Q Consensus 345 ~aH~~GI~VIl 355 (666)
.+.++||+|..
T Consensus 60 ~l~~~Gl~i~~ 70 (284)
T PRK13210 60 AIYETGVRIPS 70 (284)
T ss_pred HHHHcCCCceE
Confidence 99999999874
No 157
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.46 E-value=25 Score=35.22 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.7
Q ss_pred hhhhhHHHHHcCCceEEECccc
Q 005976 266 VVEKLDHLKDLGINCLELMPCH 287 (666)
Q Consensus 266 i~~~L~yLk~LGvnaI~L~Pi~ 287 (666)
+...+..||++|.+.|-++|+-
T Consensus 137 vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecC
Confidence 3456899999999999999974
No 158
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=51.20 E-value=24 Score=41.88 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=31.5
Q ss_pred CcchhhhhhhhHHHH--HcCCceEE-ECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 260 PGTYLGVVEKLDHLK--DLGINCLE-LMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk--~LGvnaI~-L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
-|++..+++.+.... -+|++-|. +.|.-... +--|.|.+-|..+|-|-.
T Consensus 164 fgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~-----------------~SPYsp~Sr~alNPlyI~ 215 (695)
T PRK11052 164 FGDLKQMLEDVAKRGGDFIGLNPIHALYPANPES-----------------ASPYSPSSRRWLNVIYID 215 (695)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCC-----------------CCCcccccccccChHHcC
Confidence 477888888775433 34577777 44543211 112888888888888865
No 159
>PRK14705 glycogen branching enzyme; Provisional
Probab=50.10 E-value=40 Score=42.61 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=48.5
Q ss_pred CCCeEEeCCcE-EEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCC--CCCceEEEEEcCccC
Q 005976 97 PFGATLRDGGV-NFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGKFS 173 (666)
Q Consensus 97 ~lGa~~~~~g~-~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~--~~~~~Y~y~i~~~~~ 173 (666)
-||.|..++|+ .+|+|.|.|.+|.|+.- + ...+|.. ...|+|.+.+|.. .....|.+++.-.
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~--~--------~~~~~~~---~~~g~~~~~~~~~~~~~~~~y~~~~~~~-- 586 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVTA--A--------GRVPMTH---EAHGVWAAVLEPLQAGHVPDYRLEVTYD-- 586 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEeC--C--------Cceeeee---CCCCEEEEeccccccCCCCCeEEEEEeC--
Confidence 47888777884 79999999999999621 1 1124542 3459999999842 1223488877521
Q ss_pred CCCCccccCcceecCcccee
Q 005976 174 PQEGHYFDPTKIVLDPYAKA 193 (666)
Q Consensus 174 ~~~g~~~~~~~~~~DPya~~ 193 (666)
.+. ...+.|||+..
T Consensus 587 --~~~----~~~~~d~y~~~ 600 (1224)
T PRK14705 587 --GAE----PVTIDDPYHYL 600 (1224)
T ss_pred --Ccc----ceEeccccccC
Confidence 111 12467999864
No 160
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=49.95 E-value=1.4e+02 Score=35.40 Aligned_cols=127 Identities=16% Similarity=0.073 Sum_probs=70.4
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
..|++|+++|+|+|+|....+..+. ... .-=|-|..+.-+ +.+=|-+..=.++
T Consensus 338 ~l~~ri~~~~~~~VyLqafadp~gd-----------g~~-~~lYFpnr~lPm---------------raDlfnrvawql~ 390 (672)
T PRK14581 338 KLVQRISDLRVTHVFLQAFSDPKGD-----------GNI-RQVYFPNRWIPM---------------RQDLFNRVVWQLA 390 (672)
T ss_pred HHHHHHHhcCCCEEEEEeeeCCCCC-----------Cce-eeEEecCCcccH---------------HHhhhhHHHHHHH
Confidence 3469999999999999987664321 000 001333332211 2455666655666
Q ss_pred H-cCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCC-ccccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCc
Q 005976 348 K-RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGE-FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHV 425 (666)
Q Consensus 348 ~-~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~-~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gI 425 (666)
. .|++|..-+.+--..-.. ..|. .... ++.+. ...-..+-..|..-+|++|+.|.++..-....-.|
T Consensus 391 tR~~v~vyAWmpvl~~~l~~-~~~~--------~~~~--~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~ 459 (672)
T PRK14581 391 SRPDVEVYAWMPVLAFDMDP-SLPR--------ITRI--DPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPI 459 (672)
T ss_pred hhhCceEEEeeehhhccCCc-ccch--------hhhc--ccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 4 499999887654221100 0000 0000 11110 00000012356667899999999999999965699
Q ss_pred cEEEEec
Q 005976 426 DGFRFDL 432 (666)
Q Consensus 426 DGfR~D~ 432 (666)
||+=|.-
T Consensus 460 ~GilfhD 466 (672)
T PRK14581 460 DGIIYHD 466 (672)
T ss_pred CeEEecc
Confidence 9998853
No 161
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=49.61 E-value=78 Score=36.86 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=44.3
Q ss_pred hhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHH
Q 005976 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVRE 345 (666)
Q Consensus 266 i~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~ 345 (666)
..+.|..+|++|+|+|+---.+...+. ..+ .| .|+ ..-||..||++
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~Hep-------~~g-------~y----------~Fs----------G~~DlvkFikl 96 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNLHEP-------SPG-------KY----------DFS----------GRYDLVKFIKL 96 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeecccccC-------CCC-------cc----------ccc----------chhHHHHHHHH
Confidence 356788899999999996554432110 000 01 122 26789999999
Q ss_pred HHHcCCEEEEeeccccccC
Q 005976 346 AHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 346 aH~~GI~VIlDvV~NH~~~ 364 (666)
+|+.|+-|||-+=+=-+++
T Consensus 97 ~~~~GLyv~LRiGPyIcaE 115 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAE 115 (649)
T ss_pred HHHCCeEEEecCCCeEEec
Confidence 9999999999887655554
No 162
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=48.76 E-value=93 Score=32.51 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=41.8
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.+.+..||+.|++.|.+. +|. +.+. |. .+.+. .+.++..+.++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~-~~~~----------------~~-----~i~~~-----------~s~~~~~~ai~~l 167 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDT-SQEF----------------YS-----NIIST-----------HTYDDRVDTLENA 167 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccC-CHHH----------------Hh-----hccCC-----------CCHHHHHHHHHHH
Confidence 567899999999999987 331 1100 11 11111 1378899999999
Q ss_pred HHcCCEEEEeecccc
Q 005976 347 HKRGIEVVMDVVFNH 361 (666)
Q Consensus 347 H~~GI~VIlDvV~NH 361 (666)
|+.||+|...+++.+
T Consensus 168 ~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 168 KKAGLKVCSGGIFGL 182 (296)
T ss_pred HHcCCEEEEeEEEeC
Confidence 999999998888765
No 163
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=48.26 E-value=64 Score=36.06 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=42.4
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++||+.|.|. +..+..... -.+... -+.++..+.|+.+
T Consensus 141 ~e~l~~l~~~G~~rvslG-vQS~~~~~L----------------------~~l~R~-----------~~~~~~~~ai~~l 186 (430)
T PRK08208 141 AEKLALLAARGVNRLSIG-VQSFHDSEL----------------------HALHRP-----------QKRADVHQALEWI 186 (430)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCCHHHH----------------------HHhCCC-----------CCHHHHHHHHHHH
Confidence 467899999999999874 333221100 011111 1278899999999
Q ss_pred HHcCCEEE-Eeecccccc
Q 005976 347 HKRGIEVV-MDVVFNHTV 363 (666)
Q Consensus 347 H~~GI~VI-lDvV~NH~~ 363 (666)
++.||.+| +|+.++.-+
T Consensus 187 ~~~g~~~i~~dlI~GlP~ 204 (430)
T PRK08208 187 RAAGFPILNIDLIYGIPG 204 (430)
T ss_pred HHcCCCeEEEEeecCCCC
Confidence 99999865 999887643
No 164
>PTZ00445 p36-lilke protein; Provisional
Probab=46.26 E-value=46 Score=33.47 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 005976 336 INEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIl 355 (666)
..+|+.+++++++.||+|++
T Consensus 77 tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 77 TPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999975
No 165
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.25 E-value=98 Score=33.97 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=47.0
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCC
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF 317 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~ 317 (666)
...|=-+.+.+++++ -..+.+-.+.|+.+++ .|.|+|.++.+. .+| -
T Consensus 262 rI~irypLIpGvNDs----------~e~a~~La~ll~~l~~-~VnLIPYN~~~~-----------------~~~-----~ 308 (372)
T PRK11194 262 RVTVEYVMLDHVNDG----------TEHAHQLAELLKDTPC-KINLIPWNPFPG-----------------APY-----G 308 (372)
T ss_pred eEEEEEEeECCCCCC----------HHHHHHHHHHHhcCCc-eEEEecCCCCCC-----------------CCC-----C
Confidence 344545688888763 3444445567788876 999999876431 112 1
Q ss_pred CcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 005976 318 SPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 318 ~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIl 355 (666)
.+ +.++++++.+.+.++||.|.+
T Consensus 309 ~p---------------s~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 309 RS---------------SNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CC---------------CHHHHHHHHHHHHHCCCeEEE
Confidence 11 278899999999999999975
No 166
>PRK05660 HemN family oxidoreductase; Provisional
Probab=44.44 E-value=85 Score=34.40 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=42.4
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
++|..|+++|||.|.|.. ..+. +.-+-.+. +- .+.++..+.++.++
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS~~----------------------~~~L~~l~-r~----------~~~~~~~~ai~~~~ 153 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QSFS----------------------EEKLKRLG-RI----------HGPDEAKRAAKLAQ 153 (378)
T ss_pred HHHHHHHHcCCCEEEecc-CcCC----------------------HHHHHHhC-CC----------CCHHHHHHHHHHHH
Confidence 789999999999999764 2211 11111111 11 23788899999999
Q ss_pred HcCCEE-EEeecccccc
Q 005976 348 KRGIEV-VMDVVFNHTV 363 (666)
Q Consensus 348 ~~GI~V-IlDvV~NH~~ 363 (666)
+.|+.. -+|+.++..+
T Consensus 154 ~~G~~~v~~dli~Glpg 170 (378)
T PRK05660 154 GLGLRSFNLDLMHGLPD 170 (378)
T ss_pred HcCCCeEEEEeecCCCC
Confidence 999985 4999987643
No 167
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=44.36 E-value=73 Score=33.37 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
.+++.+-|+.|+++||+|.--+.++--+ +-++.|++.
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GLPg-------------------------------------------E~~~~mleT 203 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGLPG-------------------------------------------ETRDEMLET 203 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCCCC-------------------------------------------CCHHHHHHH
Confidence 5789999999999999998655554221 235788899
Q ss_pred HHHHHHhCCccEEEEecCCccc
Q 005976 416 LRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
++..+ +.+|||+.+-....+.
T Consensus 204 ak~v~-~~~v~GIKlH~Lhvvk 224 (312)
T COG1242 204 AKIVA-ELGVDGIKLHPLHVVK 224 (312)
T ss_pred HHHHH-hcCCceEEEEEEEEec
Confidence 98666 8999999997665553
No 168
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.54 E-value=1e+02 Score=33.60 Aligned_cols=72 Identities=6% Similarity=0.168 Sum_probs=48.6
Q ss_pred CCeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCC
Q 005976 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINY 316 (666)
Q Consensus 237 ~~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy 316 (666)
+...|=-+.+.++++ +...+.+-.+.|+.+++ .|.|+|.++.+. ..|
T Consensus 262 ~~i~ieyvLI~GvND----------s~e~a~~La~llk~l~~-~VnLIPyn~~~~----------------------~~~ 308 (356)
T PRK14462 262 KRVMFEYLVIKDVND----------DLKSAKKLVKLLNGIKA-KVNLILFNPHEG----------------------SKF 308 (356)
T ss_pred CeEEEEEEEECCCCC----------CHHHHHHHHHHHhhcCc-EEEEEeCCCCCC----------------------CCC
Confidence 344555568888877 34555555677888886 899999876432 111
Q ss_pred CCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEe
Q 005976 317 FSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 317 ~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlD 356 (666)
-.| +.+.++++.+.+.++||.|.+=
T Consensus 309 ~~p---------------s~e~i~~f~~~l~~~gi~vtvR 333 (356)
T PRK14462 309 ERP---------------SLEDMIKFQDYLNSKGLLCTIR 333 (356)
T ss_pred CCC---------------CHHHHHHHHHHHHHCCCcEEEe
Confidence 111 1678888888899999988653
No 169
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=43.51 E-value=2.3e+02 Score=29.03 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=36.0
Q ss_pred hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHH
Q 005976 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~ 344 (666)
++.+.|+.+.++|++.|+|...-... +... ++ +.++.++|-+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~--------------------~~~~-------~~-----------~~~~~~~l~~ 52 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRS--------------------WKGV-------RL-----------SEETAEKFKE 52 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCC--------------------CCCC-------CC-----------CHHHHHHHHH
Confidence 35678899999999999996532210 1110 11 1577888888
Q ss_pred HHHHcCCEEEE
Q 005976 345 EAHKRGIEVVM 355 (666)
Q Consensus 345 ~aH~~GI~VIl 355 (666)
.+.+.||+|.+
T Consensus 53 ~~~~~gl~ls~ 63 (273)
T smart00518 53 ALKENNIDVSV 63 (273)
T ss_pred HHHHcCCCEEE
Confidence 88899999764
No 170
>PLN02635 disproportionating enzyme
Probab=42.71 E-value=31 Score=39.69 Aligned_cols=56 Identities=16% Similarity=0.008 Sum_probs=40.1
Q ss_pred CCcchhhhh-hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCC
Q 005976 259 HPGTYLGVV-EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (666)
Q Consensus 259 ~~G~~~gi~-~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt 325 (666)
..|||.... +-++.+++.|.+.++|+|++...... ...+--|++.+-|+.+|-|=+
T Consensus 44 GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~-----------~~~~SPYs~~S~fa~NPlyI~ 100 (538)
T PLN02635 44 GIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKG-----------GEDGSPYSGQDANCGNTLLIS 100 (538)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC-----------CCCCCCcccccccccChhhcC
Confidence 369998765 67899999999999999997742100 001123888888888877755
No 171
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=42.53 E-value=38 Score=40.40 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~ 362 (666)
..+++++.+.|+++||++|-|+.+.=.
T Consensus 273 ~~Q~~~~~~yA~~~GI~L~GDLPIgVa 299 (745)
T PLN03236 273 DRQLRRAAAHAAAKGVILKGDLPIGVD 299 (745)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeceeC
Confidence 467888899999999999999987543
No 172
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.43 E-value=1.1e+02 Score=33.35 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=46.0
Q ss_pred eEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC
Q 005976 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (666)
Q Consensus 239 ~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~ 318 (666)
..|=-+.+.++++. -..+.+-...|+.+++ .|.|+|.++.+. .+|. .
T Consensus 256 I~iey~LIpGvNDs----------~e~a~~La~~l~~l~~-~VnLIPynp~~~-----------------~~~~-----~ 302 (345)
T PRK14457 256 VSFEYILLGGVNDL----------PEHAEELANLLRGFQS-HVNLIPYNPIDE-----------------VEFQ-----R 302 (345)
T ss_pred EEEEEEEECCcCCC----------HHHHHHHHHHHhcCCC-eEEEecCCCCCC-----------------CCCC-----C
Confidence 33434577887762 3444445577788876 799999876432 1121 1
Q ss_pred cCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 005976 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 319 ~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIl 355 (666)
+ +.++++++.+.+.++||.|.+
T Consensus 303 p---------------s~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 303 P---------------SPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred C---------------CHHHHHHHHHHHHHCCCeEEE
Confidence 1 278899999999999999864
No 173
>PRK01060 endonuclease IV; Provisional
Probab=41.01 E-value=57 Score=33.74 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=36.8
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHH
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~L 342 (666)
+.++.+.|+.++++|+++|+|.+--. ..+.. +.+ +.+++++|
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p--------------------~~~~~-------~~~-----------~~~~~~~l 52 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNP--------------------QQWKR-------KPL-----------EELNIEAF 52 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC--------------------CCCcC-------CCC-----------CHHHHHHH
Confidence 44477889999999999999965211 00110 011 26778888
Q ss_pred HHHHHHcCCEE
Q 005976 343 VREAHKRGIEV 353 (666)
Q Consensus 343 V~~aH~~GI~V 353 (666)
.+.+.++||+|
T Consensus 53 k~~~~~~gl~~ 63 (281)
T PRK01060 53 KAACEKYGISP 63 (281)
T ss_pred HHHHHHcCCCC
Confidence 89999999985
No 174
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=40.17 E-value=1.5e+02 Score=33.25 Aligned_cols=63 Identities=25% Similarity=0.231 Sum_probs=44.4
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..++++|||.|.| .|..+...... .+. + ..+.++..+.++.+
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d~vLk----------------------~lg-R----------~~~~~~~~~~i~~l 208 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNTQVRR----------------------RAG-R----------KDDREEVLARLEEL 208 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCHHHHH----------------------HhC-C----------CCCHHHHHHHHHHH
Confidence 47899999999999975 45554321110 010 1 11278899999999
Q ss_pred HHcC-CEEEEeecccccc
Q 005976 347 HKRG-IEVVMDVVFNHTV 363 (666)
Q Consensus 347 H~~G-I~VIlDvV~NH~~ 363 (666)
++.| +.|.+|++++.-+
T Consensus 209 ~~~g~~~v~~DlI~GlPg 226 (449)
T PRK09058 209 VARDRAAVVCDLIFGLPG 226 (449)
T ss_pred HhCCCCcEEEEEEeeCCC
Confidence 9999 8899999998643
No 175
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.97 E-value=1.1e+02 Score=34.44 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=43.0
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.+.|..|+++|||.|.|.. ..+.. .-.-.+.. ..+.++..+.++.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~~~----------------------~vl~~l~R-----------~~~~~~~~~ai~~l 197 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDFDP----------------------QVQKAINR-----------IQPEEMVARAVELL 197 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCH----------------------HHHHHhCC-----------CCCHHHHHHHHHHH
Confidence 4789999999999998764 22211 00011111 12378899999999
Q ss_pred HHcCCE-EEEeeccccc
Q 005976 347 HKRGIE-VVMDVVFNHT 362 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~ 362 (666)
++.|+. |-+|+.++.-
T Consensus 198 r~~G~~~v~~dli~GlP 214 (453)
T PRK13347 198 RAAGFESINFDLIYGLP 214 (453)
T ss_pred HhcCCCcEEEeEEEeCC
Confidence 999997 8899998764
No 176
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=39.31 E-value=1.2e+02 Score=34.14 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=43.2
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++|++.|.|.. ..+... -.-.+. + ..+.++..+.++.+
T Consensus 151 ~e~l~~l~~aG~~risiGv-qS~~~~----------------------~L~~l~-r----------~~~~~~~~~ai~~l 196 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-QDFDPE----------------------VQKAVN-R----------IQPFEFTFALVEAA 196 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCHH----------------------HHHHhC-C----------CCCHHHHHHHHHHH
Confidence 4788999999999998753 222110 000111 1 12378899999999
Q ss_pred HHcCC-EEEEeecccccc
Q 005976 347 HKRGI-EVVMDVVFNHTV 363 (666)
Q Consensus 347 H~~GI-~VIlDvV~NH~~ 363 (666)
++.|| .|-+|+.++..+
T Consensus 197 ~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 197 RELGFTSINIDLIYGLPK 214 (453)
T ss_pred HHcCCCcEEEEEEccCCC
Confidence 99999 799999988643
No 177
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=38.85 E-value=1.4e+02 Score=32.36 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=43.0
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++|||.|.| .|..+.... .-.+ .+ ..+.++..+.|+.+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~~~~----------------------L~~l-gR----------~~~~~~~~~ai~~l 143 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFNEDK----------------------LKFL-GR----------IHSQKQIIKAIENA 143 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHH----------------------HHHc-CC----------CCCHHHHHHHHHHH
Confidence 47899999999999985 444432210 0011 11 12378899999999
Q ss_pred HHcCCE-EEEeeccccc
Q 005976 347 HKRGIE-VVMDVVFNHT 362 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~ 362 (666)
++.|+. |-+|+.++..
T Consensus 144 r~~g~~~v~iDli~GlP 160 (350)
T PRK08446 144 KKAGFENISIDLIYDTP 160 (350)
T ss_pred HHcCCCEEEEEeecCCC
Confidence 999997 6699999764
No 178
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=37.80 E-value=1.3e+02 Score=30.44 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=48.2
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcC-CceEEECccccccccccccccCcCCCCCccccCCcccCC
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLG-INCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINY 316 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LG-vnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy 316 (666)
+..|--+.+.++.+. -..+.+-+..|++++ +..|.|+|.+..+...+.... ..|.-.++
T Consensus 163 ~v~i~~~li~g~nd~----------~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~ 222 (246)
T PRK11145 163 KTWIRYVVVPGWTDD----------DDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMG----------EEYKLDGV 222 (246)
T ss_pred cEEEEEEEECCCCCC----------HHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcC----------CcccccCC
Confidence 355555667776552 234444456667775 789999999876532111000 00111111
Q ss_pred CCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEE
Q 005976 317 FSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 354 (666)
Q Consensus 317 ~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VI 354 (666)
-. .+.++++++.+.+++.|++|+
T Consensus 223 ~~---------------~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 223 KP---------------PSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CC---------------CCHHHHHHHHHHHHHcCCccc
Confidence 11 238999999999999998874
No 179
>PLN02950 4-alpha-glucanotransferase
Probab=37.74 E-value=47 Score=40.79 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=36.3
Q ss_pred EEEEEEcCC---CCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCC--CCCceEEEEEc
Q 005976 107 VNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFD 169 (666)
Q Consensus 107 ~~F~vwap~---a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~--~~~~~Y~y~i~ 169 (666)
|+|+|.+|. ..+|.|+ =....+.+|.+..-++|. ......|++.+... .....|+|.+.
T Consensus 155 V~F~v~~~~~~~Gq~v~Vv-Gs~~eLGnW~~~~a~~Ls---~~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 155 VRFKIACPRLEEGTSVYVT-GSIAQLGNWQVDDGLKLN---YTGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred EEEEEecCccCCCCeEEEE-echhhcCCCCcccccccc---cCCCCcEEEEEEecCCCceEEEEEEEE
Confidence 789998884 3455553 222234566655555553 23568999988543 23578998874
No 180
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=37.60 E-value=1.2e+02 Score=32.32 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=24.7
Q ss_pred EEEEeCCccc-CCCCCCCCCcchhhhhhhhHHHHHcCCc
Q 005976 242 YEVHVRGFTR-HESSKTEHPGTYLGVVEKLDHLKDLGIN 279 (666)
Q Consensus 242 Yei~v~~f~~-~~~~~~~~~G~~~gi~~~L~yLk~LGvn 279 (666)
..|++++... ++.. ....|+|+.+.+.+..+++.|+.
T Consensus 127 i~VSLDG~~e~hd~~-~~~~g~f~~~l~~I~~l~~~G~~ 164 (318)
T TIGR03470 127 FSVHLDGLREHHDAS-VCREGVFDRAVEAIREAKARGFR 164 (318)
T ss_pred EEEEEecCchhhchh-hcCCCcHHHHHHHHHHHHHCCCc
Confidence 4566665422 1111 12368999999999999999985
No 181
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=37.55 E-value=69 Score=32.96 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.8
Q ss_pred hhhhhhHHHHHcCCceEEEC
Q 005976 265 GVVEKLDHLKDLGINCLELM 284 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~ 284 (666)
.+.+.|+.++++|+++|+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 46788999999999999985
No 182
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=37.53 E-value=30 Score=36.57 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeec
Q 005976 336 INEFKLLVREAHKRGIEVVMDVV 358 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV 358 (666)
.+|++++.+.||++||.|.||.-
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehh
Confidence 89999999999999999999965
No 183
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=36.32 E-value=1.1e+02 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.1
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccc
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEF 289 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~ 289 (666)
=+.+..++..|++.|+++|+|......
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEec
Confidence 467788889999999999999998763
No 184
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=35.82 E-value=1e+02 Score=32.67 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
...++.-|++++++|++||+-+ +. ..... +-. ...-++.+.++
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~-------GG----------~~g~~-------------------~~~-~~~~~~~~~~a 95 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSF-------GG----------ASGTP-------------------LAT-SCTSADQLAAA 95 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEe-------cC----------CCCCc-------------------ccc-CcccHHHHHHH
Confidence 4668888999999999999821 11 00000 000 12345666777
Q ss_pred HHHHHHhCCccEEEEecC
Q 005976 416 LRYWVTEMHVDGFRFDLA 433 (666)
Q Consensus 416 l~~W~~e~gIDGfR~D~a 433 (666)
+...++.|++||+-||--
T Consensus 96 ~~~~i~~y~~dgiDfDiE 113 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIE 113 (294)
T ss_pred HHHHHHHhCCCeEEEecc
Confidence 777888999999999854
No 185
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.61 E-value=61 Score=33.58 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=37.3
Q ss_pred hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHH
Q 005976 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV 343 (666)
..+.+.|+.++++|+++|+|.+- .... +..+.++ +..++++|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~~~------------------~~~~~~~------------------~~~~~~~~~ 58 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ETDD------------------RLSRLDW------------------SREQRLALV 58 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cccc------------------hhhccCC------------------CHHHHHHHH
Confidence 45678899999999999999532 1100 0111111 167899999
Q ss_pred HHHHHcCCEEE
Q 005976 344 REAHKRGIEVV 354 (666)
Q Consensus 344 ~~aH~~GI~VI 354 (666)
+.+.++||+|.
T Consensus 59 ~~l~~~gl~i~ 69 (279)
T TIGR00542 59 NAIIETGVRIP 69 (279)
T ss_pred HHHHHcCCCce
Confidence 99999999985
No 186
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=35.43 E-value=1.4e+02 Score=33.66 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=42.4
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.+.|..|+++|++.|.|.. ..+... -.-.+. +- .+.++..+.++.+
T Consensus 151 ~e~l~~lk~~G~~risiGv-qS~~~~----------------------~l~~l~-r~----------~~~~~~~~ai~~l 196 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-QDFNKE----------------------VQQAVN-RI----------QPEEMIFELMNHA 196 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCCCHH----------------------HHHHhC-CC----------CCHHHHHHHHHHH
Confidence 4678999999999998753 221110 000111 11 2278899999999
Q ss_pred HHcCCE-EEEeecccccc
Q 005976 347 HKRGIE-VVMDVVFNHTV 363 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~ 363 (666)
++.|++ |-+|+.++..+
T Consensus 197 ~~~G~~~v~~dli~GlPg 214 (455)
T TIGR00538 197 REAGFTSINIDLIYGLPK 214 (455)
T ss_pred HhcCCCcEEEeEEeeCCC
Confidence 999997 77999887643
No 187
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.15 E-value=1.7e+02 Score=31.81 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=47.8
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcC-CceEEECccccccccccccccCcCCCCCccccCCcccCC
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLG-INCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINY 316 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LG-vnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy 316 (666)
...|=-+.+.++++ +...+.+..++|+.+. +..|.|+|.++.+. .+|
T Consensus 252 ~V~ieyvLIpGvND----------s~e~a~~La~~l~~l~~~~~VnLIPynp~~~----------------------~~~ 299 (348)
T PRK14467 252 RIMLEYVLIKGVND----------SPEDALRLAQLIGKNKKKFKVNLIPFNPDPE----------------------LPY 299 (348)
T ss_pred eEEEEEEEECCccC----------CHHHHHHHHHHHhcCCCceEEEEecCCCCCC----------------------CCC
Confidence 44444467888776 3445555567778774 77899999876432 111
Q ss_pred CCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEe
Q 005976 317 FSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 317 ~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlD 356 (666)
-.+ +.++++++.+.+.++||.|.+-
T Consensus 300 ~~p---------------s~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 300 ERP---------------ELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred CCC---------------CHHHHHHHHHHHHHCCCcEEEe
Confidence 111 2678888888999999998663
No 188
>PRK09936 hypothetical protein; Provisional
Probab=34.26 E-value=1.4e+02 Score=31.49 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=43.4
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHH
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~L 342 (666)
-....+.+..++.+|+++|.+.= . +|-. +.||+ +.--|.++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQW----t-------------------~yG~-------~~fg~---------~~g~La~~ 77 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQW----T-------------------RYGD-------ADFGG---------QRGWLAKR 77 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe----e-------------------eccC-------CCccc---------chHHHHHH
Confidence 45566778999999999998641 0 2311 24554 25679999
Q ss_pred HHHHHHcCCEEEEeeccc
Q 005976 343 VREAHKRGIEVVMDVVFN 360 (666)
Q Consensus 343 V~~aH~~GI~VIlDvV~N 360 (666)
+++|++.||+|++=+.++
T Consensus 78 l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 78 LAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHcCCEEEEcccCC
Confidence 999999999999977665
No 189
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=34.22 E-value=2.4e+02 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=33.8
Q ss_pred CeEEEEEEeCCcccCC----CCCCCCCcchhhhhhhhHHHHHcCCceEEECcccc
Q 005976 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHE 288 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~----~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e 288 (666)
+-.||=|+|..=.+.. +-.+.++=....+.+.+..+.++|+++|.|-|+..
T Consensus 24 ~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~ 78 (320)
T cd04823 24 DDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTP 78 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 3456777665422211 11222344578888899999999999999999954
No 190
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=34.00 E-value=2.4e+02 Score=30.17 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=72.7
Q ss_pred CeEEEEEEeCCcccCC----CCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcc
Q 005976 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~----~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (666)
+-.||=|+|..=.+.. +-.+.++=....+.+.+..+.++||++|.|-|+-+. .+. . +.-.|++
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~--Kd~------~-----gs~A~~~ 97 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHH--KDA------K-----GSDTWDD 97 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCC--CCC------C-----cccccCC
Confidence 4567777775321111 112223445778888899999999999999999431 110 0 0111221
Q ss_pred cCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHc--CCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCc
Q 005976 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKR--GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF 391 (666)
Q Consensus 314 ~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~--GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~ 391 (666)
+ .=+.+-|+++++. .|-||.||-+......+..| ... +|
T Consensus 98 ------~----------------g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcG-il~--------------~g-- 138 (322)
T PRK13384 98 ------N----------------GLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCG-VLH--------------ND-- 138 (322)
T ss_pred ------C----------------ChHHHHHHHHHHHCCCeEEEeeeecccCCCCCcee-ecc--------------CC--
Confidence 1 1145555555555 89999999998765433222 100 00
Q ss_pred cccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEE
Q 005976 392 YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 428 (666)
Q Consensus 392 ~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGf 428 (666)
.-.|.+..+.+.....-.. +-|+|-.
T Consensus 139 ----------~i~ND~Tl~~L~~~Als~A-~AGADiV 164 (322)
T PRK13384 139 ----------EVDNDATVENLVKQSVTAA-KAGADML 164 (322)
T ss_pred ----------cCccHHHHHHHHHHHHHHH-HcCCCeE
Confidence 1234566667766666666 6777755
No 191
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=33.94 E-value=2.1e+02 Score=31.12 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=48.0
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcC----CceEEECccccccccccccccCcCCCCCccccCCcc
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLG----INCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LG----vnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (666)
...|=-+.+.++.+ +-..+.+-+++++.++ +..|.|+|.++.+. ..
T Consensus 248 ~V~iry~LI~GvND----------s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~--------------------~~ 297 (347)
T PRK14453 248 KVYIAYIMLEGVND----------SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDK--------------------TP 297 (347)
T ss_pred cEEEEEEeECCCCC----------CHHHHHHHHHHHhhccccCCcceEEEecCCCCCC--------------------CC
Confidence 44444467777766 3455556667788774 67899999876431 00
Q ss_pred cCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 005976 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 314 ~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIl 355 (666)
.+|-. .+.+++++|.+.+.++||.|.+
T Consensus 298 ~~~~~---------------ps~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 298 FKFQS---------------SSAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred ccCCC---------------CCHHHHHHHHHHHHHCCCcEEE
Confidence 01111 1278999999999999999874
No 192
>PRK04302 triosephosphate isomerase; Provisional
Probab=33.13 E-value=79 Score=31.81 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 005976 336 INEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv 357 (666)
.+|.++++++|++.||.+|+++
T Consensus 100 ~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 100 LADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHHHHHHHHCCCeEEEEc
Confidence 4678999999999999999743
No 193
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=32.86 E-value=77 Score=31.99 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEe
Q 005976 336 INEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlD 356 (666)
.++.++||+.+-+.|..|.-.
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred hHHHHHHHHHHHhcccEEehh
Confidence 689999999999999987654
No 194
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=32.60 E-value=70 Score=34.15 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH 361 (666)
.+++.+.++.+|++||+|.+++.+..
T Consensus 154 ~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 154 FEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 78999999999999999999999873
No 195
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=31.66 E-value=71 Score=34.74 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=44.8
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|+.|+++|++.|.| ++..+..... -.+ .+ ..+.++..+.|+.+
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d~vL----------------------~~l-~R----------~~~~~~~~~ai~~l 148 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNNNIL----------------------KQL-NR----------THTIQDSKEAINLL 148 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHHH----------------------HHc-CC----------CCCHHHHHHHHHHH
Confidence 47899999999999876 4444322100 011 11 12378999999999
Q ss_pred HHcCCE-EEEeeccccccC
Q 005976 347 HKRGIE-VVMDVVFNHTVE 364 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~~ 364 (666)
++.|+. |-+|+.++.-+.
T Consensus 149 r~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 149 HKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHcCCCcEEEEEeecCCCC
Confidence 999997 999999987654
No 196
>PRK15447 putative protease; Provisional
Probab=31.65 E-value=1.1e+02 Score=32.31 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 005976 336 INEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIl 355 (666)
.+++++.|+.+|++|.+|.+
T Consensus 47 ~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 47 VGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 79999999999999999988
No 197
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=30.88 E-value=1e+02 Score=32.02 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeec
Q 005976 336 INEFKLLVREAHKRGIEVVMDVV 358 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV 358 (666)
.+++++|++.||+.|+.+|+|+-
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh 168 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVH 168 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeC
Confidence 57899999999999999999973
No 198
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=30.70 E-value=3.3e+02 Score=29.06 Aligned_cols=50 Identities=26% Similarity=0.239 Sum_probs=33.0
Q ss_pred CeEEEEEEeCCcccCC----CCCCCCCcchhhhhhhhHHHHHcCCceEEECccc
Q 005976 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCH 287 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~----~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~ 287 (666)
+-.||=|+|..=.+.. +-.+.++=+...+.+.+..+.++|+.+|-|-|+-
T Consensus 21 ~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (314)
T cd00384 21 DDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIP 74 (314)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3456666665321111 1122234457888889999999999999999993
No 199
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=30.68 E-value=85 Score=34.65 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=44.2
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
.+++.++...|..||.+||+.|.+ +|+- |---. .-...| ...-+
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmv-dvWW---------------------GiVE~---~~p~~y-----------dWs~Y 55 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMV-DVWW---------------------GIVEG---EGPQQY-----------DWSGY 55 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEE-EEEH---------------------HHHTG---SSTTB--------------HHH
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEE-EeEe---------------------eeecc---CCCCcc-----------CcHHH
Confidence 467889999999999999999986 3332 21000 000111 15679
Q ss_pred HHHHHHHHHcCCEEEEeecccccc
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHTV 363 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~~ 363 (666)
++|.+.+++.||+|..=+-+.-++
T Consensus 56 ~~l~~~vr~~GLk~~~vmsfH~cG 79 (402)
T PF01373_consen 56 RELFEMVRDAGLKLQVVMSFHQCG 79 (402)
T ss_dssp HHHHHHHHHTT-EEEEEEE-S-BS
T ss_pred HHHHHHHHHcCCeEEEEEeeecCC
Confidence 999999999999998877775554
No 200
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=30.60 E-value=84 Score=31.72 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
++......+..+.++|++.|-+.--... ... . ...+++++
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~----------------------~~~------~------------~~~~~i~~ 113 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS----------------------EEE------R------------EMLEELAR 113 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC----------------------chH------H------------HHHHHHHH
Confidence 4566666788899999999855432210 000 0 11788999
Q ss_pred HHHHHHHcCCEEEEeecc
Q 005976 342 LVREAHKRGIEVVMDVVF 359 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~ 359 (666)
+++.||+.|+++|+|+..
T Consensus 114 v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 114 VAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHcCCCEEEEEec
Confidence 999999999999997644
No 201
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=30.17 E-value=1.1e+02 Score=31.61 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 005976 336 INEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv 357 (666)
.++|++|++.||+.||.+++.|
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 6789999999999999999986
No 202
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=30.15 E-value=58 Score=34.75 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 432 (666)
.++..|+.+++++..|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 35788999999999999999999999983
No 203
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=29.97 E-value=1.6e+02 Score=25.46 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=36.0
Q ss_pred EEEEEEcCC---CCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCC--CCceEEEEEc
Q 005976 107 VNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF--KDMLYGYKFD 169 (666)
Q Consensus 107 ~~F~vwap~---a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~--~~~~Y~y~i~ 169 (666)
|.|+|..|. ...+.|+- ....+.+|.+..-++|.. ..+..|++.++-.. ....|+|.+.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~G-s~~~LG~W~~~~a~~l~~---~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTG-SSPELGNWDPQKALKLSD---VGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred EEEEEEcCccCCCCEEEEEE-ChHHhCCCCccccccCCC---CCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 689998874 24555542 112245566655667743 35689998876432 2467888775
No 204
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=29.75 E-value=69 Score=36.05 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVF 359 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~ 359 (666)
.--+..+|+-||..||++|...|=
T Consensus 457 ~~I~~hII~MAk~L~L~iVaEGVE 480 (524)
T COG4943 457 HLIAPHIIEMAKSLGLKIVAEGVE 480 (524)
T ss_pred chhHHHHHHHHHHcCCcEEeeccc
Confidence 345789999999999999988763
No 205
>PLN02161 beta-amylase
Probab=29.65 E-value=3.7e+02 Score=30.70 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=44.9
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHH
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk 340 (666)
-+.+.+...|..||.+||+.|-+ +|+ ||.--.. .+ ..| ...-++
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmv-DVW---------------------WGiVE~~--~p-~~Y-----------dWsgY~ 157 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAV-EVW---------------------WGIVERF--SP-LEF-----------KWSLYE 157 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-Eee---------------------eeeeecC--CC-CcC-----------CcHHHH
Confidence 35678889999999999999975 443 3321110 00 111 146689
Q ss_pred HHHHHHHHcCCEEEEeeccccc
Q 005976 341 LLVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 341 ~LV~~aH~~GI~VIlDvV~NH~ 362 (666)
+|++.+.+.||||..=+-|.-+
T Consensus 158 ~l~~mvr~~GLKlq~vmSFHqC 179 (531)
T PLN02161 158 ELFRLISEAGLKLHVALCFHSN 179 (531)
T ss_pred HHHHHHHHcCCeEEEEEEeccc
Confidence 9999999999999877776554
No 206
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.32 E-value=1.1e+02 Score=31.27 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH 361 (666)
.++++++++.|+++||+.++=+.++-
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46899999999999999998666543
No 207
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=28.87 E-value=3.1e+02 Score=29.24 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=33.3
Q ss_pred CeEEEEEEeCCcccCC----CCCCCCCcchhhhhhhhHHHHHcCCceEEECccc
Q 005976 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCH 287 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~----~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~ 287 (666)
+-.||=|+|..=.+.. +-.+.++=.+..+.+.+..+.++||++|-|-|+-
T Consensus 21 ~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (320)
T cd04824 21 SNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVP 74 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4456666665321111 1122234457888889999999999999999994
No 208
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.87 E-value=2.1e+02 Score=31.13 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=45.8
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCC
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF 317 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~ 317 (666)
...|=-+.++++.+ +...+.+-...++.++ ..|.|+|....+. ..|.+
T Consensus 262 ~v~iey~lI~gvND----------s~ed~~~La~ll~~l~-~~VnLIPynp~~~-----------------~ky~~---- 309 (356)
T PRK14455 262 RVTFEYILLGGVND----------QVEHAEELADLLKGIK-CHVNLIPVNPVPE-----------------RDYVR---- 309 (356)
T ss_pred eEEEEEEEeCCCCC----------CHHHHHHHHHHHhcCC-CcEEEEecCcCCC-----------------CCCcC----
Confidence 44443456676655 2345555557777777 5789999876432 11222
Q ss_pred CcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 005976 318 SPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 318 ~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIl 355 (666)
+ +.+.+.++.+.++++||.|.+
T Consensus 310 -p---------------s~e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 310 -T---------------PKEDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred -C---------------CHHHHHHHHHHHHHCCCcEEE
Confidence 1 168888999999999999865
No 209
>PRK07094 biotin synthase; Provisional
Probab=28.62 E-value=83 Score=33.45 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecccccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTV 363 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~ 363 (666)
.++..+.++.+|+.||.|-.++++.+-+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceEEEECCC
Confidence 7889999999999999999999998754
No 210
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.48 E-value=1.2e+02 Score=27.76 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=26.1
Q ss_pred hhhhhhhhHHHHHcCCceEEECcccccccc
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNEL 292 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~ 292 (666)
...+.+.|+.|.+.|++.|.+.|.+-+++.
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~ 84 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGE 84 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcH
Confidence 566788899999999999999999987654
No 211
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=28.09 E-value=3.4e+02 Score=29.04 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=32.9
Q ss_pred CeEEEEEEeCCcccC----CCCCCCCCcchhhhhhhhHHHHHcCCceEEECcc
Q 005976 238 DLIIYEVHVRGFTRH----ESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC 286 (666)
Q Consensus 238 ~~vIYei~v~~f~~~----~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi 286 (666)
+-.||=|+|..=.+. .+-.+..+=....+.+.+..+.++|+++|-|-|+
T Consensus 29 ~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 29 NDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCc
Confidence 345676766542221 1112223445788888999999999999999999
No 212
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=28.08 E-value=70 Score=34.96 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccC
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 364 (666)
.+-||++.+.||+.||-||.|=||.|+.-
T Consensus 218 ~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 218 EDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred HHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 78899999999999999999999999943
No 213
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=27.86 E-value=65 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 432 (666)
.++..|+.+++.+..+++++|.||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 45788999999999999999999999983
No 214
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=27.86 E-value=48 Score=33.66 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=41.6
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
........++|.+.|-++.-+...... .|. ...+++++++++|
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~--------------~~~-----------------------~~~~~i~~v~~~~ 121 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG--------------NED-----------------------EVIEEIAAVVEEC 121 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT--------------HHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccc--------------cHH-----------------------HHHHHHHHHHHHH
Confidence 556788889999999988765321100 000 1279999999999
Q ss_pred HHcCCEEEEeeccccc
Q 005976 347 HKRGIEVVMDVVFNHT 362 (666)
Q Consensus 347 H~~GI~VIlDvV~NH~ 362 (666)
|+.||+||+..++..-
T Consensus 122 ~~~gl~vIlE~~l~~~ 137 (236)
T PF01791_consen 122 HKYGLKVILEPYLRGE 137 (236)
T ss_dssp HTSEEEEEEEECECHH
T ss_pred hcCCcEEEEEEecCch
Confidence 9999999999776543
No 215
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.83 E-value=1.2e+02 Score=28.13 Aligned_cols=56 Identities=20% Similarity=0.381 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
-+||+-|++.|++.|+.|++=+.+=+- .| +.+.|. +.+.|+...+-
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvNg------------------~w---------ydytG~-------~~~~r~~~y~k 80 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVNG------------------KW---------YDYTGL-------SKEMRQEYYKK 80 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE----H------------------HH---------HHHTT---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCcH------------------HH---------HHHhCC-------CHHHHHHHHHH
Confidence 689999999999999999885554321 12 222222 36788999999
Q ss_pred HHHHHHhCCc
Q 005976 416 LRYWVTEMHV 425 (666)
Q Consensus 416 l~~W~~e~gI 425 (666)
++.-++++|+
T Consensus 81 I~~~~~~~gf 90 (130)
T PF04914_consen 81 IKYQLKSQGF 90 (130)
T ss_dssp HHHHHHTTT-
T ss_pred HHHHHHHCCC
Confidence 9999999988
No 216
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=27.79 E-value=66 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 432 (666)
.++..|+.+++.+..|+++++.||+-+|-
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45788999999999999999999999984
No 217
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=27.50 E-value=91 Score=33.31 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCEEEEeeccc
Q 005976 340 KLLVREAHKRGIEVVMDVVFN 360 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~N 360 (666)
...|++||++|++|+==+.+.
T Consensus 45 ~~widaAHrnGV~vLGTiife 65 (311)
T PF03644_consen 45 AGWIDAAHRNGVKVLGTIIFE 65 (311)
T ss_dssp HHHHHHHHHTT--EEEEEEEE
T ss_pred chhHHHHHhcCceEEEEEEec
Confidence 346899999999998877773
No 218
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.44 E-value=3e+02 Score=29.21 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=39.3
Q ss_pred hhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcC-----CCCCCCCccCCCCCcHHHHHHHH
Q 005976 269 KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM-----ISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 269 ~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d-----~~ygt~~~~~~~~g~~~efk~LV 343 (666)
....+++.|++.|+|..- +||-...|.++. -.||... ..+..-+.+.|
T Consensus 146 aA~~a~~aGfDgveih~~----------------------~gyL~~qFlsp~~n~R~d~yGgs~-----enr~r~~~eii 198 (327)
T cd02803 146 AARRAKEAGFDGVEIHGA----------------------HGYLLSQFLSPYTNKRTDEYGGSL-----ENRARFLLEIV 198 (327)
T ss_pred HHHHHHHcCCCEEEEcch----------------------hhhHHHHhcCccccCCCcccCCCH-----HHHHHHHHHHH
Confidence 346677899999998752 456544444442 2355421 12344456777
Q ss_pred HHHHHc---CCEEEEeeccc
Q 005976 344 REAHKR---GIEVVMDVVFN 360 (666)
Q Consensus 344 ~~aH~~---GI~VIlDvV~N 360 (666)
+++.+. ++.|.+++-..
T Consensus 199 ~avr~~~g~d~~i~vris~~ 218 (327)
T cd02803 199 AAVREAVGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHcCCCceEEEEechh
Confidence 777764 67777777654
No 219
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.32 E-value=1.3e+02 Score=32.15 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=39.7
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
.|+|+.+.+.++.+++.|+..|.+.-+.-.. -..+|+
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g-------------------------------------------~N~~ei 172 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVILRG-------------------------------------------QNDDEV 172 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEEECC-------------------------------------------CCHHHH
Confidence 5789999999999999998666655432100 016889
Q ss_pred HHHHHHHHHcCCEEE
Q 005976 340 KLLVREAHKRGIEVV 354 (666)
Q Consensus 340 k~LV~~aH~~GI~VI 354 (666)
.+|++-+++.|+.|.
T Consensus 173 ~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 173 LDLVEFCRERGLDIA 187 (329)
T ss_pred HHHHHHHHhcCCeEE
Confidence 999999999998775
No 220
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=27.28 E-value=1.2e+02 Score=34.43 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=47.5
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
...|.-..+-++.+++||+|+.-++=-+..-.. -|.. -.++ ....+-.
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P----------------~g~~----~~~n------------~~~~~~Y 114 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFP----------------QGDE----LTPN------------QQGIAFY 114 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeee----------------CCCC----CCCC------------HHHHHHH
Confidence 345778889999999999999988755542110 0000 0011 1237889
Q ss_pred HHHHHHHHHcCCEEEEeeccccc
Q 005976 340 KLLVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV~NH~ 362 (666)
++||++|+++||++|+.+. |.
T Consensus 115 ~~~i~~l~~~gi~p~VtL~--H~ 135 (474)
T PRK09852 115 RSVFEECKKYGIEPLVTLC--HF 135 (474)
T ss_pred HHHHHHHHHcCCEEEEEee--CC
Confidence 9999999999999998764 54
No 221
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=27.06 E-value=64 Score=34.12 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEe
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFD 431 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D 431 (666)
.++..|+.+++++..+++++|+||+-+|
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 4678899999999999999999999998
No 222
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.37 E-value=96 Score=34.30 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=44.8
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++|||.|.|-. ..+.... .-.+... -+.++..+.++.+
T Consensus 115 ~e~l~~l~~~GvnrislGv-QS~~d~~----------------------L~~l~R~-----------~~~~~~~~ai~~l 160 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGV-QAFQDEL----------------------LALCGRS-----------HRVKDIFAAVDLI 160 (400)
T ss_pred HHHHHHHHHCCCCEEEEEc-ccCCHHH----------------------HHHhCCC-----------CCHHHHHHHHHHH
Confidence 4789999999999999753 3322110 0011111 1278899999999
Q ss_pred HHcCCE-EEEeeccccccC
Q 005976 347 HKRGIE-VVMDVVFNHTVE 364 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~~ 364 (666)
++.|+. |-+|+.++.-+.
T Consensus 161 ~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 161 HQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HHcCCCeEEEEeecCCCCC
Confidence 999999 889999987654
No 223
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=26.21 E-value=98 Score=33.78 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=43.4
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.+.|..|+++|++.|.|.. ..+... -+-.+. +- .+.++..+.|+.+
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-qS~~~~----------------------~l~~l~-r~----------~~~~~~~~~i~~l 145 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-QTFNDE----------------------LLKKIG-RT----------HNEEDVYEAIANA 145 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCCHH----------------------HHHHcC-CC----------CCHHHHHHHHHHH
Confidence 4778999999999988753 222110 000111 11 2278899999999
Q ss_pred HHcCCE-EEEeeccccccC
Q 005976 347 HKRGIE-VVMDVVFNHTVE 364 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~~ 364 (666)
++.|+. |-+|+.++.-+.
T Consensus 146 ~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 146 KKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHcCCCcEEEeeecCCCCC
Confidence 999998 678999887654
No 224
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=26.20 E-value=69 Score=33.83 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 005976 403 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433 (666)
Q Consensus 403 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a 433 (666)
..++..|+.+++.+..+++++|.||+-+|--
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E 113 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE 113 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC
Confidence 3567889999999999999999999999964
No 225
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=26.10 E-value=67 Score=34.75 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 432 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 432 (666)
.++..|+.+++.+..|++++++||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 45778899999999999999999999983
No 226
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=25.71 E-value=67 Score=29.32 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEe
Q 005976 333 HDAINEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 333 ~g~~~efk~LV~~aH~~GI~VIlD 356 (666)
+.+..|++.+-+.+.++||+|++|
T Consensus 18 i~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 18 IMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred eeeHHHHHHHHHHHHhCCcEEEEC
Confidence 345899999999999999999998
No 227
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=25.44 E-value=5e+02 Score=27.71 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=55.0
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHH
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~L 342 (666)
...=.+.+..+++.|.|+=.--|=-+ -|.-..+..+-| ....++|++|
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAPKdD---------------------pyhr~~Wre~Yp-----------~~el~~l~~L 61 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAPKDD---------------------PYHRSKWREPYP-----------EEELAELKEL 61 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--TT----------------------TTTTTTTTS--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEECCCCC---------------------hHHHhhhcccCC-----------HHHHHHHHHH
Confidence 33344567888899999766555111 022222222221 1238999999
Q ss_pred HHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHh
Q 005976 343 VREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTE 422 (666)
Q Consensus 343 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e 422 (666)
|++|++.||+.+.=+-+. .++.+..++..+.|+.-+.... +
T Consensus 62 ~~~a~~~~V~Fv~aisPg--------------------------------------~~~~~s~~~d~~~L~~K~~ql~-~ 102 (306)
T PF07555_consen 62 ADAAKANGVDFVYAISPG--------------------------------------LDICYSSEEDFEALKAKFDQLY-D 102 (306)
T ss_dssp HHHHHHTT-EEEEEEBGT--------------------------------------TT--TSHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHcCCEEEEEECcc--------------------------------------cccccCcHHHHHHHHHHHHHHH-h
Confidence 999999999877644332 1233445677778888887776 8
Q ss_pred CCccEEEE
Q 005976 423 MHVDGFRF 430 (666)
Q Consensus 423 ~gIDGfR~ 430 (666)
.||.-|-+
T Consensus 103 lGvr~Fai 110 (306)
T PF07555_consen 103 LGVRSFAI 110 (306)
T ss_dssp TT--EEEE
T ss_pred cCCCEEEE
Confidence 99998877
No 228
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.43 E-value=93 Score=31.18 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=36.5
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHH
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk 340 (666)
++-....+.|+.+.+.|+++|.+.|+.. +.+.
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~------------------------------------------------~~~~ 70 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDP------------------------------------------------DSLA 70 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSST------------------------------------------------TTTH
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCH------------------------------------------------HHHH
Confidence 4566677778888888888888887542 2356
Q ss_pred HHHHHHHHcCCEEEE
Q 005976 341 LLVREAHKRGIEVVM 355 (666)
Q Consensus 341 ~LV~~aH~~GI~VIl 355 (666)
.++++|.++||.||+
T Consensus 71 ~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 71 PFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHhhcCceEEE
Confidence 788899999999998
No 229
>PLN02803 beta-amylase
Probab=25.39 E-value=2.8e+02 Score=31.82 Aligned_cols=84 Identities=14% Similarity=0.285 Sum_probs=54.2
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcch---hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCccc
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTY---LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~---~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (666)
-.-+|-+.+-+.... .|++ ++|...|..||.+||+.|-+ +|+ ||.--.
T Consensus 85 ~vpvyVMlPLd~V~~-------~~~~~~~~~l~~~L~~LK~~GVdGVmv-DVW---------------------WGiVE~ 135 (548)
T PLN02803 85 GVPVFVMLPLDTVTM-------GGNLNKPRAMNASLMALRSAGVEGVMV-DAW---------------------WGLVEK 135 (548)
T ss_pred ceeEEEEeecceecc-------CCcccCHHHHHHHHHHHHHcCCCEEEE-Eee---------------------eeeecc
Confidence 355677666554321 2445 77889999999999999975 443 331111
Q ss_pred CCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 005976 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 315 dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 364 (666)
. . ...| ...-+++|++.+.+.||||..=+-|.-++.
T Consensus 136 ~--~-p~~Y-----------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 136 D--G-PMKY-----------NWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred C--C-CCcC-----------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 0 0 0111 146689999999999999988777765543
No 230
>PRK06256 biotin synthase; Validated
Probab=25.05 E-value=91 Score=33.40 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH 361 (666)
.++..+.++.+|+.||+|...+++.+
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 78899999999999999999888876
No 231
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=24.86 E-value=76 Score=33.67 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 005976 405 HPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 434 (666)
Q Consensus 405 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 434 (666)
++.-|+.+++.+..++++||+||+-||--.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~ 125 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEY 125 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeee
Confidence 356788999999999999999999998543
No 232
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=24.57 E-value=1.7e+02 Score=26.26 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=35.8
Q ss_pred cEEEEEEcC---CCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCC-CCCceEEEEEc
Q 005976 106 GVNFSIFSS---NAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (666)
Q Consensus 106 g~~F~vwap---~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-~~~~~Y~y~i~ 169 (666)
.++|+|.+| -...|.|+- +...+.+|.+..-++|.... ..+..|++.+.-. .....|+|.+.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G-~~~~LG~W~~~~a~~l~~~~-~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVG-SLPVLGNWQPEKAVPLEKED-DDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEe-ChHHhCCCCHHhCeeCccCC-CcCCccEEEEEECCCCeEEEEEEEE
Confidence 378999885 233444431 11125667766667775421 2558998876532 23577777774
No 233
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=24.51 E-value=1.2e+02 Score=33.17 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=44.0
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++|||.|.|- |..+.... .-.+... -+.++..+.|+.+
T Consensus 103 ~~~l~~l~~~G~nrislG-vQS~~~~~----------------------L~~l~R~-----------~~~~~~~~ai~~~ 148 (370)
T PRK06294 103 ESYIRALALTGINRISIG-VQTFDDPL----------------------LKLLGRT-----------HSSSKAIDAVQEC 148 (370)
T ss_pred HHHHHHHHHCCCCEEEEc-cccCCHHH----------------------HHHcCCC-----------CCHHHHHHHHHHH
Confidence 477999999999999764 33332210 0011111 1268888999999
Q ss_pred HHcCCE-EEEeeccccccC
Q 005976 347 HKRGIE-VVMDVVFNHTVE 364 (666)
Q Consensus 347 H~~GI~-VIlDvV~NH~~~ 364 (666)
++.|+. |-+|+.++.-+.
T Consensus 149 ~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 149 SEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHcCCCeEEEEeecCCCCC
Confidence 999996 889999987654
No 234
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=24.50 E-value=1.3e+02 Score=32.40 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=50.5
Q ss_pred CCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCC-CccccCCcccCCCCcCCCCCCCCccCCCCCcH
Q 005976 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY-KVNFWGYSTINYFSPMISYSSAGIRNCGHDAI 336 (666)
Q Consensus 258 ~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~-~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~ 336 (666)
.+.|++.-..+.++-.++.|+++|=+.-. ...+. .........+ ..+.| ....+|..-..+.. +.
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~-~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l---------~~ 75 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTF-KAEDL--VSKNAPKAEYQKINTG--AEESQLEMLKKLEL---------SE 75 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeC-CHHHh--hCcccccccccccCCc--CCCcHHHHHHHhCC---------CH
Confidence 35799999999999999999999998863 22111 0000000000 00112 11122222222222 37
Q ss_pred HHHHHHHHHHHHcCCEEEEe
Q 005976 337 NEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 337 ~efk~LV~~aH~~GI~VIlD 356 (666)
++++.|.+.|++.||.++-.
T Consensus 76 e~~~~L~~~~~~~Gi~~~st 95 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLST 95 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEE
Confidence 99999999999999998865
No 235
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.92 E-value=3.5e+02 Score=29.34 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=43.8
Q ss_pred eEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC
Q 005976 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (666)
Q Consensus 239 ~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~ 318 (666)
..|=-+.++++.+ +...+.+..++++++.+ .|-|+|..+... .+|..
T Consensus 247 V~ieyvLI~GvND----------s~e~~~~L~~ll~~~~~-~VnLIPynp~~~----------------------~~~~~ 293 (343)
T PRK14468 247 VTLEYTMLKGVND----------HLWQAELLADLLRGLVS-HVNLIPFNPWEG----------------------SPFQS 293 (343)
T ss_pred EEEEEEEeCCCcC----------CHHHHHHHHHHHhcCCc-EEEEEcCCCCCC----------------------CCCCC
Confidence 3443456676655 23444555577777754 688888765211 12222
Q ss_pred cCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 005976 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 319 ~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIl 355 (666)
+ +.++++++.+.+.++|+.|.+
T Consensus 294 p---------------s~e~i~~f~~~L~~~Gi~vti 315 (343)
T PRK14468 294 S---------------PRAQILAFADVLERRGVPVSV 315 (343)
T ss_pred C---------------CHHHHHHHHHHHHHCCCeEEE
Confidence 2 268899999999999999976
No 236
>PLN02411 12-oxophytodienoate reductase
Probab=23.86 E-value=3.9e+02 Score=29.51 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEG 365 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~ 365 (666)
+..||+|++++|++|-++++-+ +|.+..
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL--~H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQL--WHVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCC
Confidence 7889999999999999998875 576654
No 237
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.78 E-value=1.5e+02 Score=31.42 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEG 365 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~ 365 (666)
.+.||++++++|++|-++++- ++|.+..
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Q--l~h~G~~ 103 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQ--LAHAGRQ 103 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHH--hhCCCcC
Confidence 789999999999999998764 5787654
No 238
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=23.36 E-value=3.2e+02 Score=29.77 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 005976 336 INEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIl 355 (666)
.++++++.+.+.++|+.|++
T Consensus 308 ~e~i~~f~~~L~~~gi~v~i 327 (355)
T TIGR00048 308 NEQIDRFAKTLMSYGFTVTI 327 (355)
T ss_pred HHHHHHHHHHHHHCCCeEEE
Confidence 78899999999999999976
No 239
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.26 E-value=79 Score=30.51 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=33.3
Q ss_pred hHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHHc
Q 005976 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKR 349 (666)
Q Consensus 270 L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~ 349 (666)
|..++++|++.|+|.+...... .. ...+++++.+.+.++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~----------------------~~-------------------~~~~~~~~~~~~~~~ 39 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPW----------------------DE-------------------KDDEAEELRRLLEDY 39 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHH----------------------TH-------------------HHHHHHHHHHHHHHT
T ss_pred ChHHHHcCCCEEEEecCCCccc----------------------cc-------------------chHHHHHHHHHHHHc
Confidence 5678999999999988654211 00 026788999999999
Q ss_pred CCEEEE
Q 005976 350 GIEVVM 355 (666)
Q Consensus 350 GI~VIl 355 (666)
||+|+.
T Consensus 40 gl~i~~ 45 (213)
T PF01261_consen 40 GLKIAS 45 (213)
T ss_dssp TCEEEE
T ss_pred CCeEEE
Confidence 999654
No 240
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=23.17 E-value=2.1e+02 Score=30.68 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=68.9
Q ss_pred CeEEEEEEeCCcccCC----CCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcc
Q 005976 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~----~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (666)
+-.||=|+|..=.+.. +-.+.++=....+.+.+..+.++|+.+|.|-|+......+.. ++..|++
T Consensus 27 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~-----------gs~a~~~ 95 (324)
T PF00490_consen 27 SDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEE-----------GSEAYNP 95 (324)
T ss_dssp GGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS------------GGGGST
T ss_pred HHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcc-----------hhcccCC
Confidence 4567777766432211 111223345778888899999999999999999653221110 0111222
Q ss_pred cCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHHH--cCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCc
Q 005976 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHK--RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF 391 (666)
Q Consensus 314 ~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~--~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~ 391 (666)
. |- +.+.|+++++ -.|-||.||-+.........| ... +.+|
T Consensus 96 ~-------------------g~---v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcG-il~------------~~~g-- 138 (324)
T PF00490_consen 96 D-------------------GL---VQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCG-ILD------------DEDG-- 138 (324)
T ss_dssp T-------------------SH---HHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSS-EB-------------CTTS--
T ss_pred C-------------------Ch---HHHHHHHHHHhCCCcEEEEecccccccCCCceE-EEE------------CCCC--
Confidence 1 11 3334444443 369999999998765443332 110 0111
Q ss_pred cccCCCCccCCCCCHHHHHHHHHHHHHHHHhCCccEEE
Q 005976 392 YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429 (666)
Q Consensus 392 ~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR 429 (666)
.-.|.+..+.+.....-.. +-|+|-.-
T Consensus 139 ----------~idND~Tl~~Lak~Al~~A-~AGADiVA 165 (324)
T PF00490_consen 139 ----------EIDNDETLERLAKQALSHA-EAGADIVA 165 (324)
T ss_dssp ----------SBEHHHHHHHHHHHHHHHH-HHT-SEEE
T ss_pred ----------eEecHHHHHHHHHHHHHHH-HhCCCeec
Confidence 1234556667776666666 67888664
No 241
>PRK12928 lipoyl synthase; Provisional
Probab=23.11 E-value=2.1e+02 Score=30.26 Aligned_cols=61 Identities=25% Similarity=0.238 Sum_probs=43.7
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHH
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk 340 (666)
=|...+.+.|..|+++|++.|.+.+-..- + ...-+-.+|-+ +++|+
T Consensus 216 ET~ed~~etl~~Lrel~~d~v~i~~Yl~p-~-----------------------~~~~~v~~~~~----------~~~f~ 261 (290)
T PRK12928 216 ETEDEVIETLRDLRAVGCDRLTIGQYLRP-S-----------------------LAHLPVQRYWT----------PEEFE 261 (290)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEcCCCC-C-----------------------ccCCceeeccC----------HHHHH
Confidence 37888999999999999999988774431 1 11112233433 89999
Q ss_pred HHHHHHHHcCCEEEE
Q 005976 341 LLVREAHKRGIEVVM 355 (666)
Q Consensus 341 ~LV~~aH~~GI~VIl 355 (666)
.+-+.+.+.|.+-+.
T Consensus 262 ~~~~~~~~~g~~~~~ 276 (290)
T PRK12928 262 ALGQIARELGFSHVR 276 (290)
T ss_pred HHHHHHHHcCCceeE
Confidence 999999999965444
No 242
>PLN02808 alpha-galactosidase
Probab=22.98 E-value=1e+02 Score=34.03 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 005976 336 INEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIl 355 (666)
+..||.|++.+|++|||.=+
T Consensus 96 P~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 96 PSGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CccHHHHHHHHHHCCCceEE
Confidence 35599999999999998633
No 243
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=22.91 E-value=83 Score=34.01 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCCcchhhhhhhhHHHHHcCCceEEECc
Q 005976 258 EHPGTYLGVVEKLDHLKDLGINCLELMP 285 (666)
Q Consensus 258 ~~~G~~~gi~~~L~yLk~LGvnaI~L~P 285 (666)
...||+..++++|..++++||+.+.|.+
T Consensus 301 ~lVGtpe~Va~~l~~~~~~Gv~~~~L~~ 328 (346)
T TIGR03565 301 ALVGDPETVAARIREYQDLGIDTFILSG 328 (346)
T ss_pred ceeCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 3579999999999999999999999985
No 244
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.87 E-value=1.4e+02 Score=33.75 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~ 362 (666)
.++..+.++.+|+.||.|..++++..-
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 788999999999999999999998653
No 245
>PRK09989 hypothetical protein; Provisional
Probab=22.60 E-value=1.5e+02 Score=30.20 Aligned_cols=20 Identities=15% Similarity=0.502 Sum_probs=17.5
Q ss_pred hhhhhhHHHHHcCCceEEEC
Q 005976 265 GVVEKLDHLKDLGINCLELM 284 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~ 284 (666)
.+.+.|..++++||++|+|.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~ 35 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFL 35 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEC
Confidence 45788999999999999984
No 246
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=22.27 E-value=1.7e+02 Score=30.24 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 005976 336 INEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv 357 (666)
.+++++|++.||+.||.+++.|
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEE
Confidence 5789999999999999999986
No 247
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=22.26 E-value=91 Score=32.26 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 005976 336 INEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv 357 (666)
.+++++|++.||+.||.|+..|
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 6789999999999999999986
No 248
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.01 E-value=1.4e+02 Score=35.27 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=39.8
Q ss_pred hhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHH
Q 005976 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV 343 (666)
..+.+.|.-+|++|+|+|.+..+.-.- .+|.-|.- ..+ ..|.. ++
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~----------------------------~eP~eG~f-----df~-~~D~~-~l 74 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNL----------------------------HEPEEGKF-----DFT-WLDEI-FL 74 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeec----------------------------cCcccccc-----Ccc-cchHH-HH
Confidence 567788999999999999987654321 11111110 001 12333 89
Q ss_pred HHHHHcCCEEEEeecc
Q 005976 344 REAHKRGIEVVMDVVF 359 (666)
Q Consensus 344 ~~aH~~GI~VIlDvV~ 359 (666)
+.|++.||.|||==.+
T Consensus 75 ~~a~~~Gl~vil~t~P 90 (673)
T COG1874 75 ERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHhcCceEEEecCC
Confidence 9999999999996544
No 249
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=2.2e+02 Score=30.94 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 005976 336 INEFKLLVREAHKRGIEVVM 355 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIl 355 (666)
.++|+++|+.||++|.++.+
T Consensus 48 ~~~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 48 VEDLAEAVELAHSAGKKVYV 67 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 68899999999999999876
No 250
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.81 E-value=3.9e+02 Score=29.03 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=45.1
Q ss_pred CeEEEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCC
Q 005976 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF 317 (666)
Q Consensus 238 ~~vIYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~ 317 (666)
...|=-+.+.++++ +-..+.+-.+.++++++ .|.|+|.+.... .+|-
T Consensus 250 ~v~ieyvLI~GvND----------s~e~~~~L~~ll~~l~~-~vnlIPyn~~~~----------------------~~~~ 296 (349)
T PRK14463 250 KITIEYVMIRGLND----------SLEDAKRLVRLLSDIPS-KVNLIPFNEHEG----------------------CDFR 296 (349)
T ss_pred eEEEEEEEeCCCCC----------CHHHHHHHHHHHhccCc-eEEEEecCCCCC----------------------CCCC
Confidence 33443456676655 23445555577777776 789988765321 1111
Q ss_pred CcCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEe
Q 005976 318 SPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356 (666)
Q Consensus 318 ~~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlD 356 (666)
. .+.++++++.+.+.++||.|.+-
T Consensus 297 ~---------------ps~e~i~~f~~~L~~~gi~v~vR 320 (349)
T PRK14463 297 S---------------PTQEAIDRFHKYLLDKHVTVITR 320 (349)
T ss_pred C---------------CCHHHHHHHHHHHHHCCceEEEe
Confidence 1 12788999999999999999764
No 251
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=21.69 E-value=1.9e+02 Score=32.81 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=45.0
Q ss_pred cchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHH
Q 005976 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (666)
Q Consensus 261 G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk 340 (666)
.-|.-..+-++.+|+||+|+-=++=-+..-- + -|... .++ ...++=.+
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~-------P---------~G~~~----~~N------------~~gl~~Y~ 113 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTRIF-------P---------KGDEA----QPN------------EEGLKFYD 113 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccceeec-------c---------CCCCC----CCC------------HHHHHHHH
Confidence 3577778899999999999988764443210 0 01000 011 12378899
Q ss_pred HHHHHHHHcCCEEEEeec
Q 005976 341 LLVREAHKRGIEVVMDVV 358 (666)
Q Consensus 341 ~LV~~aH~~GI~VIlDvV 358 (666)
+||++|.++||+.|+.+.
T Consensus 114 ~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 114 DMFDELLKYNIEPVITLS 131 (477)
T ss_pred HHHHHHHHcCCEEEEEee
Confidence 999999999999999764
No 252
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.58 E-value=43 Score=32.49 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 005976 336 INEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv 357 (666)
++++++||+.||++|+++-|-.
T Consensus 166 ~e~l~eFvd~Ah~hGL~~AlAG 187 (235)
T COG1891 166 EEELEEFVDLAHEHGLEVALAG 187 (235)
T ss_pred HHHHHHHHHHHHHcchHHHhcc
Confidence 8999999999999999987753
No 253
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=21.51 E-value=3e+02 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=27.1
Q ss_pred EEEEEeCCcccCCCCCCCCCcchhhhhhhhHHHHHcCCceEEECc
Q 005976 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMP 285 (666)
Q Consensus 241 IYei~v~~f~~~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~P 285 (666)
|-.+-+++|+++.. .-+...+.++...+.+-|.+.|=+..
T Consensus 5 ilN~tpdSF~dg~~-----~~~~~~~~~~a~~~~~~GA~iIDIG~ 44 (257)
T TIGR01496 5 IVNVTPDSFSDGGR-----FLSVDKAVAHAERMLEEGADIIDVGG 44 (257)
T ss_pred EEeCCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 44567889987310 11346666777777889999999854
No 254
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.50 E-value=1e+03 Score=25.47 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=35.0
Q ss_pred CeEEEEEEeCCccc----CCCCCCCCCcchhhhhhhhHHHHHcCCceEEECccccc
Q 005976 238 DLIIYEVHVRGFTR----HESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF 289 (666)
Q Consensus 238 ~~vIYei~v~~f~~----~~~~~~~~~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~ 289 (666)
+-.||=|+|..=.+ =++-.+.++=....+.+.+..+.+|||.+|-|-||-+.
T Consensus 31 ~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~ 86 (330)
T COG0113 31 NDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDD 86 (330)
T ss_pred HHeeEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 45677777764221 01112233445777788889999999999999999863
No 255
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=21.49 E-value=1.9e+02 Score=30.02 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=16.0
Q ss_pred HHHHHHHHHc-CCEEEEeec
Q 005976 340 KLLVREAHKR-GIEVVMDVV 358 (666)
Q Consensus 340 k~LV~~aH~~-GI~VIlDvV 358 (666)
+++|++||++ ||+|..--|
T Consensus 219 ~~~V~~~h~~~gl~V~~WTV 238 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGI 238 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEe
Confidence 5789999999 999987444
No 256
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.39 E-value=5e+02 Score=27.97 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEG 365 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~ 365 (666)
...||+|++++|++|-++++-+ +|.+..
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 7889999999999999998865 676543
No 257
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=21.33 E-value=3e+02 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=23.3
Q ss_pred hhhhhhhhHHHHHcC--CceEEECccccccc
Q 005976 263 YLGVVEKLDHLKDLG--INCLELMPCHEFNE 291 (666)
Q Consensus 263 ~~gi~~~L~yLk~LG--vnaI~L~Pi~e~~~ 291 (666)
...+.+-++.++++| +..|.|+|.+..+.
T Consensus 231 ~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~ 261 (295)
T TIGR02494 231 EENIEAIAAFLRKLEPGVDEIDLLPYHRLGE 261 (295)
T ss_pred HHHHHHHHHHHHHhccCCceEEecCCCchhH
Confidence 456666778889999 89999999988654
No 258
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.28 E-value=1.4e+02 Score=31.03 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~ 415 (666)
..-...|-++|.+.||+.+.--+++-+++. +-+.+++||++-
T Consensus 149 ~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~--------------------------------------gv~gaqqfIlE~ 190 (275)
T PF12683_consen 149 ARRRDIMEEACKDLGIKFVEVTAPDPTSDV--------------------------------------GVAGAQQFILED 190 (275)
T ss_dssp HHHHHHHHHHHHHCT--EEEEEE---SSTC--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCC--------------------------------------CcHHHHHHHHHH
Confidence 344667778888999988887777766442 125689999999
Q ss_pred HHHHHHhCCccEEEE
Q 005976 416 LRYWVTEMHVDGFRF 430 (666)
Q Consensus 416 l~~W~~e~gIDGfR~ 430 (666)
+-.|++.||=|=--|
T Consensus 191 vp~~i~kYGkdtaff 205 (275)
T PF12683_consen 191 VPKWIKKYGKDTAFF 205 (275)
T ss_dssp HHHHHHHH-S--EEE
T ss_pred HHHHHHHhCCceeEE
Confidence 999999999764443
No 259
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.21 E-value=1.7e+02 Score=30.23 Aligned_cols=54 Identities=20% Similarity=0.052 Sum_probs=36.2
Q ss_pred hhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHH
Q 005976 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (666)
Q Consensus 265 gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~ 344 (666)
.+.+.++-++++|+++|+|.+- .. +.+ +.+ ++ -..++++++.+
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~-------------------~~~-------~~~-~~---------~~~~~~~~l~~ 64 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ES-------------------DER-------LAR-LD---------WSREQRLALVN 64 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cc-------------------ccc-------hhc-cC---------CCHHHHHHHHH
Confidence 3567889999999999999531 10 000 000 00 01677899999
Q ss_pred HHHHcCCEEEE
Q 005976 345 EAHKRGIEVVM 355 (666)
Q Consensus 345 ~aH~~GI~VIl 355 (666)
.+.++||+|..
T Consensus 65 ~l~~~gl~i~~ 75 (283)
T PRK13209 65 ALVETGFRVNS 75 (283)
T ss_pred HHHHcCCceeE
Confidence 99999999864
No 260
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=21.17 E-value=1.4e+02 Score=33.41 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCccc
Q 005976 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 437 (666)
Q Consensus 404 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~ 437 (666)
.+|..+++|.+..+.-.+ -++|||+|..+.-|
T Consensus 374 DsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTP 405 (423)
T PF14701_consen 374 DSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTP 405 (423)
T ss_pred CCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCc
Confidence 679999999998887775 78999999887655
No 261
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=21.15 E-value=2.7e+02 Score=29.66 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=54.7
Q ss_pred hhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHH
Q 005976 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (666)
Q Consensus 263 ~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~L 342 (666)
...+.+=...|+++|||+|-|.-|-... ..+.+.| ++.+++|
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~--------------------------~~Lt~~~------------l~~v~~l 97 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANP--------------------------KLLTPEY------------LDKVARL 97 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--C--------------------------GGGSTTT------------HHHHHHH
T ss_pred hhHHHHHHHHHhhcCCceEEecccccCh--------------------------hhcCHHH------------HHHHHHH
Confidence 3444444566788999999988765422 1222333 8999999
Q ss_pred HHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHHHHHHHHHh
Q 005976 343 VREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTE 422 (666)
Q Consensus 343 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d~l~~W~~e 422 (666)
.+.+...||+|.|-+-|.---. . |.-...|.-+|+|++...+.+...-+.
T Consensus 98 AdvfRpYGIkv~LSvnFasP~~---l---------------------------ggL~TaDPld~~V~~WW~~k~~eIY~~ 147 (328)
T PF07488_consen 98 ADVFRPYGIKVYLSVNFASPIE---L---------------------------GGLPTADPLDPEVRQWWKDKADEIYSA 147 (328)
T ss_dssp HHHHHHTT-EEEEEE-TTHHHH---T---------------------------TS-S---TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEEEeeccCCcc---c---------------------------CCcCcCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999876643211 0 001234555678887777665554432
Q ss_pred -CCccEEEEec
Q 005976 423 -MHVDGFRFDL 432 (666)
Q Consensus 423 -~gIDGfR~D~ 432 (666)
=.+-||-+-|
T Consensus 148 IPDfgGflVKA 158 (328)
T PF07488_consen 148 IPDFGGFLVKA 158 (328)
T ss_dssp -TT--EEEE--
T ss_pred CCCccceEEEe
Confidence 2566776643
No 262
>PLN02801 beta-amylase
Probab=20.91 E-value=2.5e+02 Score=32.02 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=45.1
Q ss_pred chhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHH
Q 005976 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (666)
Q Consensus 262 ~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~ 341 (666)
+-+++...|..||.+||+.|.+ +|+ ||.--.. . ...| ...-.++
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmv-DVW---------------------WGiVE~~--~-P~~Y-----------dWsgY~~ 78 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMV-DVW---------------------WGIVESK--G-PKQY-----------DWSAYRS 78 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-eee---------------------eeeeccC--C-CCcc-----------CcHHHHH
Confidence 3567888999999999999975 443 3311110 0 0111 1566899
Q ss_pred HHHHHHHcCCEEEEeeccccccC
Q 005976 342 LVREAHKRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 342 LV~~aH~~GI~VIlDvV~NH~~~ 364 (666)
|++.+++.||+|..=+-|.-++.
T Consensus 79 l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 79 LFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHcCCeEEEEEEecccCC
Confidence 99999999999987777765543
No 263
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.73 E-value=1.1e+02 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEee
Q 005976 335 AINEFKLLVREAHKRGIEVVMDV 357 (666)
Q Consensus 335 ~~~efk~LV~~aH~~GI~VIlDv 357 (666)
+++.+.+++++++++|++||+=.
T Consensus 42 TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 42 TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred CHHHHHHHHHHHHHCCCeEEEec
Confidence 38999999999999999999843
No 264
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=20.70 E-value=2e+02 Score=32.65 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=46.5
Q ss_pred CcchhhhhhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHH
Q 005976 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (666)
Q Consensus 260 ~G~~~gi~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~ef 339 (666)
..-|.-..+-+.-+|+||+++-=++=-+..-. + .|.. .++ ...++=.
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~-------P---------~G~g-----~vN------------~~gl~~Y 96 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF-------P---------DGYG-----EVN------------PKGVEYY 96 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcC-------c---------CCCC-----CcC------------HHHHHHH
Confidence 34578888999999999999988765443211 0 1110 011 1237889
Q ss_pred HHHHHHHHHcCCEEEEeec
Q 005976 340 KLLVREAHKRGIEVVMDVV 358 (666)
Q Consensus 340 k~LV~~aH~~GI~VIlDvV 358 (666)
++||++|.++||+.|+-+.
T Consensus 97 ~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 97 HRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred HHHHHHHHHcCCEEEEEec
Confidence 9999999999999998654
No 265
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.61 E-value=2.4e+02 Score=29.09 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.1
Q ss_pred hhhhhhhHHHHHcCCceEEECc
Q 005976 264 LGVVEKLDHLKDLGINCLELMP 285 (666)
Q Consensus 264 ~gi~~~L~yLk~LGvnaI~L~P 285 (666)
..+.+.|+.++++|++.|+|..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc
Confidence 5567889999999999999874
No 266
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.31 E-value=1.4e+02 Score=32.73 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=43.9
Q ss_pred hhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHHH
Q 005976 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (666)
Q Consensus 268 ~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~aH 347 (666)
++|..|+++|||.|.|- |..+..... -.+.. .-+.++..+.++.++
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~d~vL----------------------~~l~R-----------~~~~~~~~~ai~~~~ 150 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALNDADL----------------------RFLGR-----------LHSVAEALAAIDLAR 150 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHH----------------------HHcCC-----------CCCHHHHHHHHHHHH
Confidence 88999999999999974 333321100 01111 112788889999999
Q ss_pred HcCCEEEEeeccccccC
Q 005976 348 KRGIEVVMDVVFNHTVE 364 (666)
Q Consensus 348 ~~GI~VIlDvV~NH~~~ 364 (666)
+.++.|-+|+.++--+.
T Consensus 151 ~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 151 EIFPRVSFDLIYARPGQ 167 (380)
T ss_pred HhCccEEEEeecCCCCC
Confidence 99999999999986543
No 267
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.22 E-value=1.1e+02 Score=33.29 Aligned_cols=68 Identities=10% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEee-ccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCCccCCCCCHHHHHHHHH
Q 005976 336 INEFKLLVREAHKRGIEVVMDV-VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 414 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~dln~~~p~vr~~i~d 414 (666)
.+.+++++++||+.||-+|+.+ ++....... .. ..+.-.+| +.|..
T Consensus 142 ~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~------------~~------------------~~~a~~~p---~~V~~ 188 (340)
T PRK12858 142 HAFVERVGAECRANDIPFFLEPLTYDGKGSDK------------KA------------------EEFAKVKP---EKVIK 188 (340)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCCcccc------------cc------------------ccccccCH---HHHHH
Confidence 6789999999999999999985 554321110 00 00000122 47788
Q ss_pred HHHHHHH-hCCccEEEEecCCcc
Q 005976 415 CLRYWVT-EMHVDGFRFDLASIM 436 (666)
Q Consensus 415 ~l~~W~~-e~gIDGfR~D~a~~l 436 (666)
.++...+ ++|||=+-+.....+
T Consensus 189 a~r~~~~~elGaDvlKve~p~~~ 211 (340)
T PRK12858 189 TMEEFSKPRYGVDVLKVEVPVDM 211 (340)
T ss_pred HHHHHhhhccCCeEEEeeCCCCc
Confidence 8888886 799998888765443
No 268
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=81 Score=35.03 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHHcCCEEEEeec--cccc
Q 005976 334 DAINEFKLLVREAHKRGIEVVMDVV--FNHT 362 (666)
Q Consensus 334 g~~~efk~LV~~aH~~GI~VIlDvV--~NH~ 362 (666)
|...+++++++.||++|+-|++|.+ .-|.
T Consensus 176 G~~~pv~~I~~la~~~ga~v~VDaaq~~~h~ 206 (405)
T COG0520 176 GTVNPVKEIAELAHEHGALVLVDAAQAAGHL 206 (405)
T ss_pred cccchHHHHHHHHHHcCCEEEEECccccCcc
Confidence 5589999999999999999999987 4444
No 269
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.12 E-value=1.7e+02 Score=32.27 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=45.1
Q ss_pred hhhhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCCcCCCCCCCCccCCCCCcHHHHHHHHHHH
Q 005976 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (666)
Q Consensus 267 ~~~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~~d~~ygt~~~~~~~~g~~~efk~LV~~a 346 (666)
.++|..|+++|||.|.|-. ..+..... -.+ .+. -+.++..+.++.+
T Consensus 111 ~e~l~~l~~~GvnRiSiGv-QS~~d~~L----------------------~~l-gR~----------h~~~~~~~ai~~~ 156 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGV-QSLKEDDL----------------------KKL-GRT----------HDCMQAIKTIEAA 156 (390)
T ss_pred HHHHHHHHHCCCCEEEEEC-CcCCHHHH----------------------HHc-CCC----------CCHHHHHHHHHHH
Confidence 3889999999999998753 33221100 011 111 1278888889999
Q ss_pred HHcCCEEEEeeccccccCC
Q 005976 347 HKRGIEVVMDVVFNHTVEG 365 (666)
Q Consensus 347 H~~GI~VIlDvV~NH~~~~ 365 (666)
++.++.|-+|++++.-+..
T Consensus 157 ~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 157 NTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHhCCcEEEEeecCCCCCC
Confidence 9999999999999987653
No 270
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.11 E-value=77 Score=33.31 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFN 360 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~N 360 (666)
.+-+++||++|++- |.|+||+.-+
T Consensus 136 KE~vR~~I~~A~kV-IAIVMD~FTD 159 (284)
T PF07894_consen 136 KEVVRRMIQQAQKV-IAIVMDVFTD 159 (284)
T ss_pred HHHHHHHHHHhcce-eEEEeecccc
Confidence 78899999999998 9999998643
No 271
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=20.05 E-value=96 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccc
Q 005976 336 INEFKLLVREAHKRGIEVVMDVVFNHT 362 (666)
Q Consensus 336 ~~efk~LV~~aH~~GI~VIlDvV~NH~ 362 (666)
.+++++|++.||++|+.||+|-++...
T Consensus 151 ~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 151 EEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 789999999999999999999987543
Done!